Organism name Ensembl version Gene name Gene Ensembl ID Transcript Ensembl IDs Rank Number of transcripts covered Total number of transcript Amplicon lenght Chromosome Fwd primer start Fwd primer stop Fwd primer sequence # of SNPs in Fwd primer Fwd primer Tm Rev primer start Rev primer stop Rev primer sequence # of SNPs in Rev primer Rev primer Tm Ensembl status Warnings Rattus norvegicus 81 5S_rRNA ENSRNOG00000041777 ENSRNOT00000063530 1 1 1 60 5 99616214 99616234 GGTCAAGCTAAACAGAGTCAG 59 99616174 99616192 AGTATTCCCAGGCAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059800 ENSRNOT00000080157 2 1 1 60 2 126678670 126678689 CTAGAGGACTGCAGGTATGG 59 126678629 126678649 TCTCCTCTATGACACCTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052755 ENSRNOT00000087104 2 1 1 60 2 85008812 85008831 CAGAGAAGATTAGCATGGCC 59 85008771 85008789 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054205 ENSRNOT00000079474 2 1 1 60 2 48414254 48414275 ACATATTGGGACAATACAGGGA 59 48414215 48414234 AATTTGCATGTTGTCCTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055198 ENSRNOT00000087276 1 1 1 62 2 44247236 44247254 CTGCTCACTTTGACAGCAC 60 44247280 44247298 GGGCCATGCTAATCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059307 ENSRNOT00000084167 1 1 1 60 2 145884819 145884840 TGTTCATCAATGAGTGACAGAG 59 145884780 145884801 ATCATTCAGATGTTCAGGACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053308 ENSRNOT00000086904 1 1 1 60 5 150939610 150939630 ACGACACAGAGAAGATTAGCA 59 150939570 150939588 ACGCTTCACAAATTTGCGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000053083 ENSRNOT00000088302 1 1 1 60 16 35258610 35258632 CAATGGCAGTATCATACATAGCC 60 35258572 35258593 TTCAATTAGCAGTAATCACGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000056014 ENSRNOT00000087465 1 1 1 60 8 116766386 116766404 CACAGATCTTGCTGCTGAC 59 116766426 116766446 CAGCTTCGGTATACTCTTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054670 ENSRNOT00000078654 1 1 1 60 11 64397268 64397292 CCATCTAGTAAAGATGGGAATACAG 59 64397232 64397250 CGTGTTATCCTTGCACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000059993 ENSRNOT00000085968 1 1 1 64 8 32053296 32053314 AATGAGGTTTATCCGAGGC 57 32053342 32053360 TCCATGTCCAAGACAACTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD50 ENSRNOG00000054737 ENSRNOT00000077341 2 1 1 65 8 96238795 96238816 TGATGATCCTATCCCGAATCTG 59 96238751 96238769 ATCTCAGAAGCCAGATCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057521 ENSRNOT00000080149 1 1 1 60 8 62185557 62185580 GAGAGTTAAGCTTCTAAGACTTCC 59 62185520 62185541 GGATAATGTCAAATACACCACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056680 ENSRNOT00000083348 1 1 1 60 11 47319494 47319514 AGAGGAGATTAGTGTGATCCC 59 47319536 47319554 GCAGGGAACACTTCATGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 pRNA ENSRNOG00000051863 ENSRNOT00000087420 2 1 1 60 8 107808380 107808398 AGACATCACCGAACATGAC 58 107808338 107808359 GACACAGGGATAAACATGACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057446 ENSRNOT00000083954 2 1 1 60 8 110837276 110837295 CCGTGTAGAGATTAGCATGG 58 110837317 110837336 GTAAGGCTCCACAAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA1 ENSRNOG00000058606 ENSRNOT00000080499 3 1 1 60 8 13870195 13870216 TGTGGCTACATTAAGATACAGG 58 13870234 13870255 GTCACCACTGTCATTTAATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA66 ENSRNOG00000059745 ENSRNOT00000087097 2 1 1 60 5 8012951 8012969 AGCAATTGTGGTTACAGCG 59 8012909 8012927 CAGGAAAGAGTAGCACCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050253.1 ENSRNOG00000044599 ENSRNOT00000069866 2 1 1 66 5 158439018 158439036 TTGGATATGCAGCTGACCA 59 158438970 158438988 AAGCCACAGTTACCAGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058534 ENSRNOT00000090841 1 1 1 60 2 250960752 250960773 TCAAGGTTCATTTGAGTAGCTG 59 250960789 250960812 TTCCTAGTCAGTCTTATCAGATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056035 ENSRNOT00000090043 1 1 1 61 11 67567113 67567134 CAGCAGGTCAATTTAACATTGG 59 67567073 67567091 GTCATCATTGAGCAAGGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058814 ENSRNOT00000087256 3 1 1 60 2 109632955 109632975 ATCGCTTGACAAGTTATGTGG 59 109632997 109633015 GGAAAGTTTCACAGGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044353 ENSRNOT00000069620 3 1 1 67 8 67470137 67470155 CCTGAATGCTCTCAACCTC 58 67470186 67470204 CATCCGAGTACCAACCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058948 ENSRNOT00000081732 1 1 1 60 16 64345300 64345320 ATCACCTTTCTCCCTCATACC 59 64345341 64345360 TCTTGATTGAGTGCACAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000051984 ENSRNOT00000088567 1 1 1 85 16 35199257 35199275 TTGACAAGGACGGAAGAGG 59 35199324 35199342 AAACAGTGGTGAGATGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055668 ENSRNOT00000087388 1 1 1 60 2 255121132 255121153 CTCTTCTTTGAATGAAGGAAGC 58 255121093 255121114 AATTCAGATGTTCACGGTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055202 ENSRNOT00000079175 1 1 1 63 X 94303393 94303415 GGAACGATACAGAGAAGATTAGC 59 94303352 94303373 GTGTCATATTCATTTGCGTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037729.1 ENSRNOG00000052455 ENSRNOT00000081986 3 1 1 81 X 29174891 29174910 ATATGTTGTCAGTTGCTGGG 58 29174952 29176347 GGAATATCAAAGAAGCCCTGG 59 Novel Rattus norvegicus 81 SNORA8 ENSRNOG00000052441 ENSRNOT00000080180 1 1 1 60 8 72701190 72701213 GTGCGATAGAAATTCACTATCTGG 60 72701153 72701173 CAGGTTTAACATGCACAAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057474 ENSRNOT00000081241 2 1 1 76 16 73461213 73461231 ATGAGGTTTATCCGAGGCG 60 73461155 73461174 TAATTACATCGCTGTCCCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061823 ENSRNOT00000082503 2 1 1 60 16 18197783 18197803 GAGAACAGGTCTTCAGTAAGG 58 18197823 18197843 TGAAGGTTCTAGGAAGGAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059821 ENSRNOT00000081575 2 1 1 60 8 22717962 22717984 GAATAAAGAGGCTTAGTATGGCC 59 22717924 22717945 ACGGAATATTCGCAGATTTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055427 ENSRNOT00000083041 2 1 1 60 16 70579575 70579598 ATTCTACCTTCCCTCATAGAAGAG 59 70579616 70579635 ACACAGCTATACATGTTCCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000060982 ENSRNOT00000085780 1 1 1 60 X 98033391 98033409 AGAGACTTTGACAGCCCAG 59 98033431 98033451 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053117 ENSRNOT00000083416 1 1 1 60 X 154843065 154843084 ACACAAGCATCAGTAGATGG 58 154843024 154843045 TGTTAGGCTACTAAGCATAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051700 ENSRNOT00000077351 1 1 1 60 X 99119514 99119533 TAACTTAGCTGATTGGGCTG 58 99119473 99119491 ACACAAGGAGCAAAGTGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051700 ENSRNOT00000077351 2 1 1 60 X 99119514 99119532 AACTTAGCTGATTGGGCTG 58 99119472 99119490 GACACAAGGAGCAAAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD35 ENSRNOG00000060031 ENSRNOT00000079563 1 1 1 60 1 101121192 101121214 GCAGATGATGGTATATTCTCACG 59 101121154 101121172 CCTTTGGCATTATCGGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000057887 ENSRNOT00000084201 1 1 1 60 9 79596974 79596993 GAGTTGGAATAGGAGCTTGC 59 79597015 79597034 GAAGGTACTGCAATACCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA75 ENSRNOG00000052748 ENSRNOT00000080697 2 1 1 60 9 93369832 93369854 GAGAAAGTTCACAGAACTAGCAC 60 93369794 93369814 AACAGCCAAATAGATCTCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060084 ENSRNOT00000091563 1 1 1 60 4 56512047 56512065 GTCAGTAGGTGGCAGAAGG 60 56512083 56512107 TAGATACACTCATAGGTGAGAACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128792.2 ENSRNOG00000057558 ENSRNOT00000091848 3 1 1 60 1 101449938 101449959 GCGGCTGGAAGATAAAGTG 59 101449982 101450001 CTTGCTTCAACAGTGTTTGG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07061462.2 ENSRNOG00000058338 ENSRNOT00000091689 1 1 1 60 4 126592915 126592935 GCCTTTGCAGGTAAATTAGTC 58 126592957 126592975 GGAACTTCAGAGTCACACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000060086 ENSRNOT00000091930 3 1 1 63 X 149156933 149156952 AATGGCAACAACAGCATAGG 59 149156889 149156907 TTCTGACTTGTGCAACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061400.2 ENSRNOG00000060373 ENSRNOT00000091705 2 1 1 82 4 121704317 121704335 AGCTATGCCACAGTCAGTC 60 121704381 121704402 GCTATTCTGTCAAACATTGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORD77 ENSRNOG00000051793 ENSRNOT00000082736 1 1 1 60 17 73704755 73704775 CTGTGATATAGCATAGCTCGG 58 73704797 73704815 TAGGAGCGAAAGACACGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068066.1 ENSRNOG00000049222 ENSRNOT00000071274 2 1 1 60 9 80685830 80685851 TTAGTGATCAAGGGTGGAAGAG 60 80685872 80685890 CAAGACTACCAGCCTAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058253 ENSRNOT00000090191 3 1 1 67 X 75529007 75529025 TTATCCATTGCACTCCGGA 59 75528958 75528976 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057259 ENSRNOT00000092057 1 1 1 67 9 110649037 110649056 TGGATGCTATGTCACATGTG 58 110649086 110649104 CTCTGAGCACAGACAAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037347.1 ENSRNOG00000046532 ENSRNOT00000073358 3 1 1 60 X 19215769 19215789 GTCTAGTTTGTGTTGCCTAGC 59 19215729 19215750 ATGTGACTACATACTAGTGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121203.2 ENSRNOG00000055449 ENSRNOT00000089603 1 1 1 60 3 102704055 102704073 TCATGGTCATTGCCAACAG 59 102704094 102704115 GAGATGATTAGCAGAACAAAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060556 ENSRNOT00000078546 1 1 1 62 17 78955056 78955074 CTGAGGTGCGATTATTGCT 58 78955100 78955118 TATGGCAAGTCCTCATGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053375 ENSRNOT00000079056 3 1 1 65 6 117241414 117241433 CAATCTGGCTGTGACATCTG 59 117241368 117241386 TAGCCAGTCAGATCAGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070278.1 ENSRNOG00000051681 ENSRNOT00000077762 2 1 1 65 8 63291867 63291886 AAAGGAGGAAAGAAAGGCAC 58 63291687 63291705 CATGTGTAAAGGTGGCGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07016310.1 ENSRNOG00000048867 ENSRNOT00000074692 2 1 1 90 14 96499569 96499587 CACAATTGCTCAACAGCCT 59 96499640 96501017 TTTGAAGAGCTCACCGAGAG 60 Novel InUTR Rattus norvegicus 81 U1 ENSRNOG00000059999 ENSRNOT00000078954 2 1 1 60 X 20520604 20520623 AGACACCACAGTCAAGAAGG 60 20520646 20520664 TATACCGAGTGCGACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054461 ENSRNOT00000078521 3 1 1 60 3 38450031 38450049 GAGAAGCGAGGTATCCGAG 60 38450072 38450091 AGTGAGTCTGTTCCAAGCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000060642 ENSRNOT00000085606 3 1 1 60 X 123382855 123382873 ACTGGCTAGTGGAAATGAC 57 123382892 123382915 GTGGACTAGGAAGAATATGAACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058754 ENSRNOT00000089315 2 1 1 60 6 43429142 43429164 GCTTAGGATGACACAAAGAAGAC 60 43429182 43429202 CACAGATTTGCACAACATCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054225 ENSRNOT00000082655 3 1 1 60 3 123643756 123643778 GATACAGAGAAGATTAGCATGGC 59 123643798 123643816 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054786 ENSRNOT00000079057 3 1 1 60 2 89239214 89239235 CTATTACTTTCCTTCCTCGCTG 59 89239255 89239274 TAACCAAACACTCAGCTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057593 ENSRNOT00000090992 3 1 1 60 X 112166151 112166171 CACATGTACATCAGTAGGCAG 59 112166111 112166129 AGGTCAGAACACTGAGGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056717 ENSRNOT00000088756 3 1 1 60 3 8964879 8964897 AGTTGGAATAGGAGCTTGC 58 8964837 8964856 TGGAGGTACTGCAATACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059048 ENSRNOT00000079127 1 1 1 60 10 74989687 74989705 GTGCTTGCTTCAGTAGCTC 59 74989645 74989664 AGAGGCCATGCTAATCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004924.1 ENSRNOG00000050663 ENSRNOT00000075021 3 1 1 81 1 168073013 168073031 CACTCGTGTCAACAGTCTC 58 168073073 168073096 CACATAGGAGAAGAGGATAAGG 57 Novel Rattus norvegicus 81 U6 ENSRNOG00000061766 ENSRNOT00000079181 1 1 1 60 16 61888929 61888947 GAGAAGATTAGCATGGCCC 58 61888971 61888989 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC122968.2 ENSRNOG00000055261 ENSRNOT00000081962 1 1 1 99 3 52588347 52588365 CAGAGCAAAGAGCAGAGTG 59 52588427 52600474 TGAGATGATCCTGTTCCGAG 59 Novel Rattus norvegicus 81 AABR07026353.1 ENSRNOG00000051800 ENSRNOT00000085716 1 1 1 95 16 73680443 73680461 GGTCTGTTACTGAGCTCCC 60 73680366 73680384 CTTGTTTCCTGCTGTCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053797 ENSRNOT00000081039 2 1 1 60 1 227935212 227935230 GTGTCAATAGGTGGCAGAG 58 227935170 227935190 TGTACAAAGCTCAGAACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030524.1 ENSRNOG00000028427 ENSRNOT00000033244 3 1 1 60 10 91753198 91753217 GACTCTTTCTACCTGCAGTC 58 91753240 91753258 GGAGTTCCTCATCTAGGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057592 ENSRNOT00000081504 2 1 1 60 7 143979111 143979131 CTTGGAACAACACAGAGATCC 59 143979147 143979171 CTTCATGTACTTGTGTATCATCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000054789 ENSRNOT00000087705 3 1 1 60 3 12600247 12600268 ACTGACAGTCCTTTATTCATCC 58 12600208 12600227 CATAAGACAGCTTTGGCCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061721 ENSRNOT00000080731 3 1 1 62 7 12102971 12102991 GGAACGACACAGAAGATTAGC 59 12102929 12102947 AACGCCTCATGAATTTGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063802.1 ENSRNOG00000059553 ENSRNOT00000078347 2 1 1 61 6 49401768 49401786 CTTGTTGGAGGAAGTGTGG 58 49401725 49401743 AGCCAGGCTTAGATTTCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA20 ENSRNOG00000058152 ENSRNOT00000082390 2 1 1 87 1 48027215 48027233 GAGCAGTTATACGCATGGG 59 48027146 48027168 GTCTAGACCATTCTACAAGAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000053887 ENSRNOT00000082467 1 1 1 60 16 37180901 37180921 GAATTCAATGGCTGAGGTGAG 59 37180861 37180883 TGTAGTCTGAATTGGGTTAGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_2787.1 ENSRNOG00000046036 ENSRNOT00000081605 1 1 1 60 1 271255425 271255443 CTCCACGGCAGGAATAGAG 60 271255383 271255401 AATCCTCCATCTCGTTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0791.1 ENSRNOG00000051069 ENSRNOT00000076801 1 1 1 120 5 74821301 74837518 TAGTTCTGTGCATCTGGGT 58 74954393 74954411 TAGCATCGTCAGAAAGCTG 58 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000048993 ENSRNOT00000075536 3 1 1 60 2 78170296 78170314 GGAGTTCTGGGCTGTAGTG 60 78170336 78170356 TATTGATGCCGAACTTAGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062512.1 ENSRNOG00000053339 ENSRNOT00000086465 2 1 1 80 4 180426509 180426528 AAGCTGGAGTCCACTATGAG 59 180425876 180426468 CCTTTGTTCTGTCATCTGCTC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000057611 ENSRNOT00000081795 1 1 1 60 X 38392668 38392688 TGGAGATGACAAGGACAAGTC 60 38392707 38392728 GAACTTATTTGGAGACTCCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056315 ENSRNOT00000090261 3 1 1 60 2 223523969 223523990 GATACAGAGGAGATTAGCATGG 58 223523930 223523948 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050399.2 ENSRNOG00000059160 ENSRNOT00000081495 3 1 1 101 5 163879669 163898846 ACTCTTCAGGGTTTCTTAACCT 59 163898907 163898926 TACATCCATGTACAGTGCCC 60 Novel Rattus norvegicus 81 AABR07070185.1 ENSRNOG00000047152 ENSRNOT00000071014 3 1 1 60 8 56642227 56642245 TCTGGAAGGTGATCGACTC 59 56642268 56642287 CAGACTTACTCCTTACCCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC117925.1 ENSRNOG00000050816 ENSRNOT00000074447 3 1 1 60 4 114940934 114940955 GCCTTAAACTCAAAGATCCACC 60 114940976 114940994 GCTCATGCCTTTAATCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA28 ENSRNOG00000058445 ENSRNOT00000083773 3 1 1 60 8 117588482 117588503 CAAGAAAGTCTCACCTATTCCA 58 117588443 117588463 GATCCTATATGACAGCTTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096930.1 ENSRNOG00000046713 ENSRNOT00000075560 1 1 1 62 4 173988144 173988162 CAAAGCCTGAGAACGTGAC 59 173988188 173988206 ATCTCCTGAGAAGCCTACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ACEA_U3 ENSRNOG00000057333 ENSRNOT00000079504 3 1 1 61 10 74765421 74765445 TACTAGAGAAGTTTCTCTGACTGTG 60 74765464 74765482 GACGCTATGTCTCGTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071000.1 ENSRNOG00000051416 ENSRNOT00000047078 1 1 1 60 8 95943842 95943861 CTGGCTCTCAGATTGTTGAC 59 95943884 95943902 ACAGTGATGTCAGATGGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000061788 ENSRNOT00000080151 2 1 1 60 2 18938133 18938153 AACATGCTACAGTGATGAAGG 58 18938172 18938193 CTACTCAACCTCTACTGTAAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055436 ENSRNOT00000090856 2 1 1 75 2 8987437 8987456 TTATCCATTGCACTCTGGCT 60 8987381 8987402 CACTGCCACAAATTATGTAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD124 ENSRNOG00000055792 ENSRNOT00000082994 2 1 1 60 10 86626779 86626798 AAGGATTCTGAGCCTCAGAG 59 86626738 86626757 CTTTCTGAAGGAAGGTCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1305178 ENSRNOG00000007532 ENSRNOT00000076713 1 1 1 80 3 9820041 9820060 ATGATCCTTTCCAAATGGCG 59 9818938 9820000 CTTCACTGACCTTGTCTTTGC 60 Novel Rattus norvegicus 81 AABR07055826.1 ENSRNOG00000054392 ENSRNOT00000086920 2 1 1 60 7 10587741 10587760 AAAGAAAGCACACTGGAGAG 58 10587700 10587720 TATGCAAAGGCTTTACCACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019341.1 ENSRNOG00000058766 ENSRNOT00000085607 1 1 1 60 15 100348693 100348712 CAACTGCCTGTTCCAATGTC 60 100348652 100348671 TGTGTATTTGCACATGGGTG 59 Novel DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 AABR07027753.1 ENSRNOG00000046334 ENSRNOT00000049182 1 1 1 82 17 43801956 43801974 TTCCTGGAGAACGTGATCG 60 43802020 43802038 TAGACCACATCCATGGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000061400 ENSRNOT00000082361 3 1 1 61 10 56507209 56507227 TGGCTAAGATCAAGTGCAG 58 56507166 56507184 TGACAACCAGAGTTTGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057168 ENSRNOT00000084703 1 1 1 61 15 17864484 17864502 AAGCCATGTCTCTGCTCAG 60 17864522 17864545 CTTGTTAGGCTACTAATCACTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038795.1 ENSRNOG00000055102 ENSRNOT00000088653 1 1 1 80 X 60864185 60864273 CTGAGTTAGGTGCTAAGGGT 59 60864124 60864143 TGGAGAAATGTGCACTTCTG 59 Novel Rattus norvegicus 81 AABR07060522.1 ENSRNOG00000036459 ENSRNOT00000054569 1 1 1 60 4 77479083 77479101 ATGTGGTCAGCTTCAAGGA 59 77479041 77479062 TAGTCAACAATTCCTAGGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067583.1 ENSRNOG00000055728 ENSRNOT00000085193 1 1 1 60 9 52938018 52938037 TCTTCAGATCCCTCATAGCC 58 52938057 52938078 CCTTCTACAAGGACAACAATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059527 ENSRNOT00000090012 2 1 1 60 9 16072222 16072243 GTACAGAGAAGATTAGCATGGC 59 16072183 16072203 GGAACGCTTTACAAATTTGCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067024.1 ENSRNOG00000060699 ENSRNOT00000082814 1 1 1 80 9 26732423 26732442 CCTTGAAGATCCCTTGTGAC 58 26728795 26732380 CTGATGGAAGAGACCTCGT 59 Novel Rattus norvegicus 81 SNORA62 ENSRNOG00000059571 ENSRNOT00000078656 3 1 1 60 4 171047877 171047897 GCACACTATTAAAGCTCAGGG 59 171047837 171047857 TTCTGACATGCAGAAGTTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD96 ENSRNOG00000060502 ENSRNOT00000088337 2 1 1 60 10 34151396 34151417 ATCCTAGTGATGACAAGGAGAC 59 34151438 34151456 GGACATGTCCTCATTCCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000054501 ENSRNOT00000083019 3 1 1 65 6 52306142 52306161 CAAAGAAGCTTAGCACTCCC 59 52306096 52306114 CATGTGGGTGTTGTTAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000053799 ENSRNOT00000083306 3 1 1 60 6 59461288 59461306 TCTGATGCCTCCTCTATCC 58 59461246 59461264 AGAGCAAGCTCCTATTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362027 ENSRNOG00000032825 ENSRNOT00000042688 1 1 1 60 10 38024745 38024764 TGAAGATGATCAGACAAGGC 58 38024704 38024722 AAAGCTGGACAGTTGTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008420.2 ENSRNOG00000058320 ENSRNOT00000079900 1 1 1 86 2 57677798 57677816 TTCTGTTTACCTTCCCGGT 59 57677865 57677885 TGAAGGCTACTGGGAAAGAG 59 Novel Rattus norvegicus 81 SNORD62 ENSRNOG00000056657 ENSRNOT00000078591 1 1 1 60 3 11240158 11240179 GGTTCCAATAGATCCTTCTGAC 58 11240200 11240218 TGTCCTCTTCATCTCCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001910.1 ENSRNOG00000051570 ENSRNOT00000078809 3 1 1 60 1 61871958 61871978 GACAAATGCTTTACTGACGAG 58 61871918 61871939 TACTTCCTGTATGTATGCTCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snosnR60_Z15 ENSRNOG00000060251 ENSRNOT00000090297 2 1 1 60 17 73704759 73704778 GATATAGCATAGCTCGGCAG 58 73704800 73704819 CAGATAGGAGCGAAAGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC110709.1 ENSRNOG00000046944 ENSRNOT00000073153 3 1 1 60 1 274306191 274306209 CTTAGACAAGTGCCAAGCC 59 274306233 274306251 ATACATGGGCTCATCACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098160.1 ENSRNOG00000055322 ENSRNOT00000086578 3 1 1 80 10 89892904 89892928 AAAGTGGAGGAACTGACTCTG 60 89892967 89892988 CTAAGAACAAACCATCCCTCCT 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060392 ENSRNOT00000088913 3 1 1 62 17 31777182 31777204 CTGACTTATAGAGACTATGCAGG 58 31777142 31777160 TTCTGCCACCTACAGACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057065 ENSRNOT00000082117 3 1 1 66 17 31913591 31913610 TCAGTGCTGTATCACATGTG 58 31913544 31913562 AAATACTGGGCAGACACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052797 ENSRNOT00000089020 2 1 1 61 8 95543709 95543727 CACTGTGTCACATGTGCAC 60 95543666 95543685 CACTGAGCATAAACAAAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC099444.2 ENSRNOG00000052606 ENSRNOT00000088222 2 1 1 69 4 78227730 78227748 ATAAGCCATCCTCGCTCAC 60 78227782 78227800 GAGGAAAGGAAGTCCTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000056342 ENSRNOT00000081473 2 1 1 60 2 236773996 236774014 GCTTATCCATTGCACTCCG 59 236774038 236774056 CGAGTTTCCCACATTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027633.1 ENSRNOG00000049875 ENSRNOT00000072320 1 1 1 60 17 39668876 39668896 TAGTTCAGCTGTTTGATCCTC 58 39668836 39668856 GCATCATGGATGAGAAGATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041731.1 ENSRNOG00000059257 ENSRNOT00000077890 2 1 1 60 X 137997876 137997894 TGGCAAGGTCCTACTTCTC 59 137997917 137997936 AACCACACGAGGATATAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027736.1 ENSRNOG00000045861 ENSRNOT00000074836 1 1 1 60 17 42895337 42895355 GCACTAGTTCAGCTGTTCG 59 42895295 42895315 CATGGATGAGAAGATGCTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057581 ENSRNOT00000088692 3 1 1 60 17 27281064 27281086 GATACAGAGAAGATTAGCATGGC 59 27281105 27281124 GGAACACTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016779.1 ENSRNOG00000052764 ENSRNOT00000083199 3 1 1 78 14 114047342 114047365 GAGTGCAAGATAGAGTATGAAGAC 59 114029242 114029261 TCTTGATTTCATGCATCCGC 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000052479 ENSRNOT00000083986 2 1 1 60 X 74879221 74879242 GAACAATGCAGAGAAGATTACC 58 74879182 74879201 GCTTTGAGAATTTGCGTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051671.1 ENSRNOG00000053329 ENSRNOT00000079487 3 1 1 60 3 19072068 19072088 GTTACATGTACTGGTACCAGC 59 19072105 19072128 GTGTCATAAATCCAGAGTTTGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061724 ENSRNOT00000085314 1 1 1 60 2 62691070 62691089 ACATCCATAGCAGTCTGACC 59 62691029 62691047 AACCAAGCAGTCAAGTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060162 ENSRNOT00000089861 2 1 1 68 2 188408399 188408420 GCAGCACATATACTGAAATTGG 58 188408352 188408372 TTGTGTCATCCTTACAAAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052799 ENSRNOT00000090061 1 1 1 60 10 85256453 85256472 CTTTGGAGGAACACAGAGAC 58 85256412 85256431 TTCATATACTGGCCTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031949.1 ENSRNOG00000061023 ENSRNOT00000086625 3 1 1 61 18 40124213 40124233 CGAGGAAGGGATTCCTTCC 60 40124257 40124276 CTTTGCCGCAGTATCTTGAC 60 Novel DesignNoJunction Rattus norvegicus 81 RGD1564534 ENSRNOG00000032038 ENSRNOT00000043280 2 1 1 92 X 63054171 63054190 TTTAAGTGCCCTGGATTCTG 58 63054245 63056314 TACTCCAAGGGCAAGAGAC 59 Novel Rattus norvegicus 81 AABR07050317.1 ENSRNOG00000052409 ENSRNOT00000080134 3 1 1 99 5 160826743 160826763 ATAAGCCTGCTTGTCTTGC 59 160826831 160826849 CTTTCCCATCAGAGACCGT 59 Novel Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000059490 ENSRNOT00000083534 1 1 1 60 14 30129541 30129564 CTCACTGATAAGTCGATATTAGCC 59 30129504 30129525 AGTCTGTAAGTTGTAAAGTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052353 ENSRNOT00000080514 1 1 1 60 3 113392036 113392055 ATACAGAGAAGATCAGCACG 57 113391995 113392015 GGAACATTGCACAGATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054266 ENSRNOT00000091090 2 1 1 60 10 67489762 67489780 CTGCTTAGCTGTGTCTGTC 58 67489803 67489822 ACACTGAGTGCAGAAATAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024869.1 ENSRNOG00000059970 ENSRNOT00000083624 3 1 1 73 16 20108509 20108528 CGTCATTTACGGAAAGTCAG 57 20108450 20108474 CACAGGTTTCTAGTCTACCC 57 Novel DesignNoJunction Rattus norvegicus 81 U4 ENSRNOG00000061633 ENSRNOT00000087642 1 1 1 61 10 49279952 49279970 ATGAGGTTTATCCGAGGCG 60 49279994 49280013 TGTTGGTAAAGTGCTTTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060364.1 ENSRNOG00000061225 ENSRNOT00000090525 2 1 1 60 4 69970941 69970960 AAGAAGTTAGACCACAGGGA 58 69970898 69970917 CTTTGTTTAGCTCTGAGCCC 59 Novel DesignNoJunction Rattus norvegicus 81 ENSRNOG00000050152 ENSRNOT00000075483 1 1 1 80 18 54247824 54495024 TGGTCTTATGAGATGCAGCA 59 54495067 54495085 GCTGTTGTGAAGGTCTTGG 59 Novel Rattus norvegicus 81 AABR07066116.1 ENSRNOG00000051710 ENSRNOT00000088083 2 1 1 60 9 3238363 3238381 CATCTCCACCACGATTCAG 58 3238405 3238423 TACATGGGCTTTGGTGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059283 ENSRNOT00000090130 1 1 1 60 14 21783063 21783081 CTTGGTCGAAGATAGCCCT 59 21783102 21783123 TACTATACCCTCAACCAAAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005758.2 ENSRNOG00000060297 ENSRNOT00000083692 1 1 1 60 1 196471601 196471621 CATGATGGGTTCAATGATGTC 57 196471561 196471582 CTTTCAAGGTGAAAGACATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060318 ENSRNOT00000084473 2 1 1 60 2 224561413 224561435 GGAACGATACAGAGAAGATTAGC 59 224561455 224561473 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061810 ENSRNOT00000086013 1 1 1 60 4 156751797 156751815 AGATGCTATGACTTCGCTC 57 156751755 156751775 TCATGGGTACAAGTCATTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061810 ENSRNOT00000086013 2 1 1 60 4 156751795 156751814 GATGCTATGACTTCGCTCAG 59 156751754 156751775 TTCATGGGTACAAGTCATTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010787.1 ENSRNOG00000053939 ENSRNOT00000079146 1 1 1 85 2 151684434 151684452 TATTCCTAAACCCAGGCCG 59 151684366 151684386 CGAGCCTCTTATACCTTCCC 60 Novel Rattus norvegicus 81 AABR07010787.1 ENSRNOG00000053939 ENSRNOT00000079146 2 1 1 86 2 151684434 151684452 TATTCCTAAACCCAGGCCG 59 151684365 151684385 CCGAGCCTCTTATACCTTCC 60 Novel Rattus norvegicus 81 U3 ENSRNOG00000055743 ENSRNOT00000086670 3 1 1 61 10 74765421 74765445 TACTAGAGAAGTTTCTCTGACTGTG 60 74765464 74765482 GACGCTATGTCTCGTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044501 ENSRNOT00000069768 1 1 1 60 10 58847792 58847811 GTCTGATCTTGGAAGCTGAG 58 58847834 58847852 CCATCTCAACTCCATCCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008025.1 ENSRNOG00000032097 ENSRNOT00000050574 1 1 1 60 2 39507494 39507512 CCAAGTCCAAGAACCACAC 59 39507535 39507554 TTGATGTCATTTCTGTGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052040 ENSRNOT00000088823 3 1 1 60 2 240772926 240772948 GATACAGAGAAGATTAGCATGGC 59 240772888 240772906 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Hhipl2 ENSRNOG00000056400 ENSRNOT00000077166 2 1 1 80 13 101819394 101819413 CGGATCAGTCAGATGAAGGT 59 101819453 101821302 ATCTATCTCCAAGATGACCCTC 59 Novel Rattus norvegicus 81 Rn60_7_1407.1 ENSRNOG00000051446 ENSRNOT00000089630 3 1 1 81 7 142884370 142884820 TAAGCATGTAAGTCGGGTCC 60 142884862 142884882 TACCAGATTGTCCAAAGACCA 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000053994 ENSRNOT00000083918 1 1 1 75 1 158057532 158057550 AGAAATGTTGCAGGTGTGG 59 158057475 158057494 GAGCATAGACATAGCCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056952 ENSRNOT00000091329 3 1 1 61 3 148628947 148628969 CAATACAGAGATTAGAATGGCCC 59 148628988 148629008 ATGGAATGCTTCACCAATTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069011.1 ENSRNOG00000055895 ENSRNOT00000089124 3 1 1 80 8 5201990 5202010 ACCACTAACATTCGAAAGGGT 60 5201726 5201949 TAAAGGTCACCATGGTCTCC 59 Novel Rattus norvegicus 81 AABR07007730.1 ENSRNOG00000018045 ENSRNOT00000024269 3 1 1 60 2 26086129 26086150 GGAGTCTCATCATTGACTATGC 59 26086170 26086189 GCATAGGAGAAGAGTTGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050561.1 ENSRNOG00000057128 ENSRNOT00000087911 3 1 1 99 5 169899626 169899646 ATAAGCCTGCTTGTCTTGC 59 169899714 169899732 CTTTCCCATCAGAGACCGT 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000060691 ENSRNOT00000078391 1 1 1 60 14 44221184 44221207 GTACTAACACTGGAACATACAGAG 59 44221147 44221167 TTGAATGTCATCCTTGCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067762.1 ENSRNOG00000055383 ENSRNOT00000090305 3 1 1 80 9 61738619 61738649 ACGAATGGACAAAGGATGGT 60 61738690 61738710 TCCAGTAAACAACATCTCCCA 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000054522 ENSRNOT00000082811 3 1 1 79 12 23689116 23689134 CACTTGGCAGCACATACAC 60 23689055 23689075 AATTTGCATGTCCTCCTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034366 ENSRNOT00000052489 2 1 1 60 14 59470603 59470624 GATCTCATCTGTTCTCAGAAGC 59 59470643 59470663 ATTCTCCATCCAAGTACTAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128759.1 ENSRNOG00000016095 ENSRNOT00000021545 2 1 1 82 1 22529364 22529382 TTCCTCATTGCAAAGCAGC 59 22529452 22529470 GCTTTCCTCTCCCTCTTGG 60 Novel DesignNoJunction Rattus norvegicus 81 SCARNA16 ENSRNOG00000057444 ENSRNOT00000089532 2 1 1 61 14 86679616 86679634 CAGCCCTGTACCTTTAGCT 59 86679573 86679591 CAGGGAGGATGCTTCTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA3 ENSRNOG00000055001 ENSRNOT00000089120 1 1 1 60 1 174133773 174133794 AACTACTGACCTTATTCACTGG 58 174133814 174133833 TCACTAACCTGGTGACTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006255.1 ENSRNOG00000036633 ENSRNOT00000054815 2 1 1 119 1 226038640 226038659 TTGAACTTTGTCCACATGGA 58 226038742 226038760 CACCTTCCCAATGAGTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07072546.1 ENSRNOG00000045578 ENSRNOT00000074537 1 1 1 80 17 29863005 29863027 AGATTTCACCTCACATGCG 58 29862943 29862962 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 Rn60_X_0714.1 ENSRNOG00000051189 ENSRNOT00000076224 3 1 2 81 X 70440108 70440224 GAACAACTTGCTAGATGGGC 59 70440046 70440065 TGACTGTTCGCACCATAGAG 60 Novel Rattus norvegicus 81 Rn60_X_0714.1 ENSRNOG00000051189 ENSRNOT00000076322 1 1 2 80 X 70456913 70456932 CTGGAACTTGCTGTGTAGAC 59 70446742 70456873 GTCTCAGACACTTTAATCCCAG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055664 ENSRNOT00000083486 3 1 1 61 14 75953619 75953640 GTCACATGTGATTTGTAAGTGG 58 75953660 75953680 GTCAGAACACTGACTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061143 ENSRNOT00000083828 3 1 1 60 14 59631218 59631239 CATCAATTGACTCTGAATGTGC 58 59631258 59631278 GTTGAGTTGCCTACATTTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004263.1 ENSRNOG00000048799 ENSRNOT00000073974 3 1 1 60 1 134605342 134605361 TTGTCTTGGAACTCACTCTG 58 134605384 134605402 AGAGGCAGGTAGATCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070270.1 ENSRNOG00000055900 ENSRNOT00000081624 1 1 1 64 8 62563532 62563550 GTCATGAGACAGGTGGAGG 60 62563485 62563506 CACATCTCATTTGTTGCTAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 U6atac ENSRNOG00000057098 ENSRNOT00000083604 3 1 1 60 2 53432092 53432111 ACAGAAAGCTTAACACTCCC 58 53432051 53432071 TTAGAAGGTGTTAGGCACAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045369 ENSRNOT00000070636 2 1 1 60 1 29352847 29352866 CATCTTAGTGCTTTCGTGGT 58 29352887 29352907 GAGCTGCTGTCTATATTCCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD52 ENSRNOG00000057819 ENSRNOT00000081740 3 1 1 60 2 120783165 120783185 TGAGTTCTTTGCAGACTAGAG 58 120783206 120783225 GGATACCTTGCATTCTCGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128154.1 ENSRNOG00000060588 ENSRNOT00000090067 1 1 1 80 10 46484136 46484156 ACCAAGTTGAACTGGAAAGAC 59 46484075 46484097 ATAATGAGTTGTGATGTGCGAG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000058640 ENSRNOT00000089681 1 1 1 60 1 184495492 184495510 TGAGTATGACCCTGCTGTG 59 184495534 184495552 GATCAGCTCACTAGACCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060992.2 ENSRNOG00000052923 ENSRNOT00000079328 2 1 1 60 4 102262086 102262107 AGAGTCTGCTACATAGTAATGG 57 102262128 102262146 TTTCCTGGCTTCTGAAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052709 ENSRNOT00000088516 3 1 1 61 2 2720455 2720475 GCTGTGTCACATATGTGTCTG 59 2720414 2720435 ACACTGAGTATAGACATAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0829.4 ENSRNOG00000051100 ENSRNOT00000076902 1 1 1 86 13 77983547 77987970 CAGTAAAGGGTAAGATGATGGC 59 77983482 77983500 CTCTACTTATGGCCACGGG 60 Novel Rattus norvegicus 81 Rn60_13_0839.5 ENSRNOG00000051303 ENSRNOT00000089351 1 1 2 80 13 78991942 78996047 GTCTACACCACGTCAAGTG 58 78996089 78996109 GTAGAAGGTACATCCATGACG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000057538 ENSRNOT00000082909 3 1 1 63 10 70581883 70581901 GTCACATGTGCATCAGCAG 60 70581838 70581857 TAGGTCAGAACATTGAGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040480.1 ENSRNOG00000057407 ENSRNOT00000085348 2 1 1 80 X 102032096 102035715 AGATGTGGTCCATGTCTGC 60 102032034 102032052 CCAGAAGGTACTTTGCCCA 60 Novel Rattus norvegicus 81 AABR07047744.1 ENSRNOG00000057999 ENSRNOT00000078109 3 1 1 61 5 45560756 45560774 CACCAACAATGGAGGAGTG 59 45560798 45560819 ATAGGTGACAGCAAATGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORD115 ENSRNOG00000054743 ENSRNOT00000079198 3 1 1 60 1 116711089 116711110 CAACAGAAAGTCAAGAACAGGA 59 116711050 116711070 CTCAGCGTAATCCTATTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096353.1 ENSRNOG00000050136 ENSRNOT00000073324 3 1 1 60 1 256453645 256453663 CTGTCCTTCTTCTCGATGG 57 256453687 256453705 TTGTCTAAGGCTTTGGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Cylc1 ENSRNOG00000056740 ENSRNOT00000086866 2 1 1 86 X 82295540 82297038 CATGTTAATCCGTCAAACTAGG 57 82297082 82297103 TTCTTCATATCTGGCATAGGTG 58 Novel Rattus norvegicus 81 SNORA48 ENSRNOG00000056252 ENSRNOT00000085524 3 1 1 60 1 200427704 200427724 TGGTGTTCTTATATCAGTCGG 57 200427664 200427685 TCAAGTTAGGATGACCAAAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000059948 ENSRNOT00000082973 2 1 1 61 1 56860112 56860133 GACAACAGAAAGTCAAGAACAG 58 56860072 56860092 TCAGCGTAATCCTATTGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008681.1 ENSRNOG00000053969 ENSRNOT00000078674 3 1 1 87 2 70490255 70490275 AACAAGTAGAAGCCTACAGAG 57 70490323 70490819 TCCCTTACTGCTTTCAACTG 58 Novel Rattus norvegicus 81 AABR07049228.1 ENSRNOG00000056007 ENSRNOT00000090548 2 1 1 60 5 110978609 110978628 TTAGGAAGTCTCGTCTGCTC 59 110978568 110978587 ACAGTTACCACAACACTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049228.1 ENSRNOG00000056007 ENSRNOT00000090548 3 1 1 60 5 110978609 110978627 TAGGAAGTCTCGTCTGCTC 58 110978567 110978586 TACAGTTACCACAACACTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000053632 ENSRNOT00000084607 3 1 1 60 4 166663759 166663777 GTTGATGAAGAACGCAGCT 59 166663717 166663736 CATGATCAATGTGTCCTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD91 ENSRNOG00000056913 ENSRNOT00000085864 1 1 1 60 10 61754622 61754643 GAGCCAATGATGTCTTTATCCA 59 61754664 61754682 TGTGCATCACTGAGATGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000052742 ENSRNOT00000084988 2 1 1 75 12 46863298 46863316 AATGAGGTTTATCCGAGGC 57 46863241 46863259 ATATTGCAAGTCGTCACGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056949 ENSRNOT00000090093 1 1 1 60 1 75450314 75450333 GGTCTTAACATCTGTCACCC 58 75450354 75450374 TTAGCCACCAAGATTAGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012342.1 ENSRNOG00000050472 ENSRNOT00000049525 1 1 1 60 2 194084435 194084453 CCTAACAAACCGCATTGAG 57 194084393 194084413 GGCCATCATTTCCTTAAAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057535 ENSRNOT00000084532 1 1 1 60 1 147142725 147142746 GAATGATACAGAGAAGATTGGC 57 147142686 147142705 GCTTCACGAATTTGCATGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057535 ENSRNOT00000084532 2 1 1 60 1 147142720 147142741 ATACAGAGAAGATTGGCATGAC 58 147142681 147142700 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060403 ENSRNOT00000089786 2 1 1 60 2 54697620 54697640 CACATGTGCATCAGTAAGTGG 60 54697660 54697680 GGCAGAATACTGAGTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015941.1 ENSRNOG00000058474 ENSRNOT00000079300 1 1 1 60 14 86952203 86952221 GTCTGGGAAGCTGAAAGTC 58 86952161 86952180 TTCTTTATGTTTGGCCAGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.15 ENSRNOG00000050556 ENSRNOT00000072543 2 1 1 60 1 121197408 121197429 GTTATATTCCAGGACTTGTCCA 58 121197369 121197388 TTTCACACCATTGAGTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056602 ENSRNOT00000077130 2 1 1 60 1 234591798 234591817 CCAATTTCTCCCTCACTGTC 58 234591839 234591858 CTCTTCAGTGGAGTACACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058145 ENSRNOT00000085737 3 1 1 60 1 84797429 84797448 TTCGGTCAAGGGTATACGAG 59 84797388 84797406 CTGAGAGCTTGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059639.1 ENSRNOG00000052925 ENSRNOT00000089564,ENSRNOT00000087619 2 2 2 80 4 29561561 29561579 CTCTAGAAAGAACCCTGCC 57 29561621 29562210 TCAATCCAGTAGTAATCGCTC 57 Novel Rattus norvegicus 81 AABR07049134.5 ENSRNOG00000056992 ENSRNOT00000046837 3 1 1 60 5 107369954 107369972 TCAAGCTATCCCTGTCCTG 59 107369994 107370014 CTTTGATGTGAAGAGGCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000051593 ENSRNOT00000085190 1 1 1 80 1 116994489 116994509 GGGTCTATGTCGATGATAGCA 59 116994429 116994450 CTCAGCGTAATACTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058751 ENSRNOT00000083673 3 1 1 60 12 2164179 2164197 CTGAATGGAGAAGCTTGGT 57 2164221 2164239 CTTGTTTGGAGGAGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059557 ENSRNOT00000086555 1 1 1 60 5 68338918 68338937 TGCATCCATAAGTTGCAGAG 58 68338877 68338896 CTCAGATCAGATCCGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073021.2 ENSRNOG00000057061 ENSRNOT00000089432 2 1 1 88 4 82229035 82229053 GAACGGCCAAATGTACTGC 60 82228241 82228259 CTGAAGGATGGGAGACGAC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000055539 ENSRNOT00000079321 2 1 1 67 3 83589397 83589415 TAGAGGGATTGCAGGTGTG 59 83589446 83589464 TAGCCTCTGTCCTTTCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055539 ENSRNOT00000079321 3 1 1 68 3 83589397 83589415 TAGAGGGATTGCAGGTGTG 59 83589446 83589465 ATAGCCTCTGTCCTTTCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055376 ENSRNOT00000087776 3 1 1 60 12 37763035 37763057 TCTATCAAGTCTGTATGAGTGGC 60 37762997 37763016 TTGTGAGAGCTTGTTTGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058706 ENSRNOT00000083388 3 1 1 60 14 110455659 110455679 GGGAGAGGATTATCCATTGCA 60 110455619 110455642 CTCACATTTGGAGAAATCTCAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056412 ENSRNOT00000088035 3 1 1 70 6 20219783 20219802 CCCTTGTCAACACAAATCCT 58 20219835 20219853 GTTATCTTTGCACAGGTGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA28 ENSRNOG00000055908 ENSRNOT00000088162 3 1 1 60 6 136005851 136005871 ACTGTCTGACACAATTTGAGC 59 136005893 136005911 AGAGAACACCGGAATAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055725 ENSRNOT00000089684 2 1 1 60 6 12054026 12054047 GCAGGACATGTATTAGAAATGG 57 12053987 12054007 TTACGTGTTATCCTTGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063288.1 ENSRNOG00000055030 ENSRNOT00000084708 3 1 1 62 6 27129392 27129413 TTGAGTAGAAGACACCACATCC 60 27129351 27129369 CGGAGACCACCTAAACCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051642 ENSRNOT00000084378 1 1 1 60 14 55760099 55760119 CTGCTGTGTCACAAGTTTCTC 60 55760059 55760080 TTCAGCATAGACCTAGCTTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059991 ENSRNOT00000078217 2 1 1 60 5 2951271 2951291 TTAGAAACATTGCAGGTGTGG 59 2951231 2951250 CTCCTTTCTGCTACCAACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053169.1 ENSRNOG00000058767 ENSRNOT00000088395 2 1 1 105 3 94987838 94987857 GTTTGACCAACGTAACCCA 58 94987751 94987770 AAGAGGAAGTGATGAGTCCT 58 Novel Rattus norvegicus 81 AC117925.4 ENSRNOG00000057972 ENSRNOT00000089870 3 1 1 80 4 114822759 114822781 GATGGTAGTGGATAATGAAGAGG 58 114822564 114822720 TTACTGTCTTCATCCAGCCA 59 Novel Rattus norvegicus 81 SCARNA20 ENSRNOG00000061095 ENSRNOT00000085456 3 1 1 60 12 24679709 24679729 CATGGAGATCACATTCCTCCT 59 24679750 24679769 ATGCTCCTCACAGACTTGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000056133 ENSRNOT00000084145 2 1 1 77 12 10655652 10655670 CTGGGAAGGTCTGAGACTG 59 10655593 10655611 TTTCTCTGGGAACTCACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000056133 ENSRNOT00000084145 3 1 1 77 12 10655652 10655670 CTGGGAAGGTCTGAGACTG 59 10655593 10655612 TTTCTCTGGGAACTCACCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000052601 ENSRNOT00000079689 2 1 1 60 2 161553369 161553387 TCATGGACACTTCGAACCC 60 161553410 161553429 CTCAGACAGGTGTAGTCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060169 ENSRNOT00000080034 2 1 1 60 1 59770152 59770174 TGATACAGAGGAGATTAGCATGG 60 59770194 59770212 AACGCTTCATGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054059 ENSRNOT00000079461 1 1 1 62 1 236005227 236005248 GAATAACACAGAGAAGATCGGT 58 236005268 236005289 CCTGCTCATGAATTTGTATGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008670.1 ENSRNOG00000047646 ENSRNOT00000075575 2 1 1 180 2 69736984 69737003 CTCAGGAGCAGAAGATTCCA 59 69737141 69737165 GTTGAAGATTACTGGTCCTTTGAG 60 Novel Rattus norvegicus 81 SNORA40 ENSRNOG00000055387 ENSRNOT00000080795 3 1 1 69 1 85407597 85407616 TTGAACCAGTGGACAAAGAC 58 85407547 85407565 CAATGAGTTCTGGGTTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0739.1 ENSRNOG00000051360 ENSRNOT00000076498 3 1 1 82 X 73005568 73008814 CATTGGAGCTCACCTTAGC 58 73008859 73008878 CACAGTCTTTAACAGCACCT 58 Novel Rattus norvegicus 81 AABR07042629.1 ENSRNOG00000055757 ENSRNOT00000089516 3 1 1 63 19 426229 427419 GATCCAAGAACAACAGGGC 59 427442 427464 CTCTCCAGGTCTTCATAATATGG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA73 ENSRNOG00000054876 ENSRNOT00000088349 1 1 1 60 1 41003937 41003958 GCATATCCCTACAACTTCTCAG 59 41003979 41003997 CCTGCATAGTTTGTCTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Txnl4a ENSRNOG00000052004 ENSRNOT00000089487 3 1 1 66 18 76737340 76737358 TGAGCTCTATGACCCATGC 59 76740331 76740351 GCCCAAATCAATCATGATGTG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000056494 ENSRNOT00000080284 2 1 1 60 1 249539926 249539946 AGGCGATGTTTATGTTCAGTG 59 249539965 249539986 AGGCTGCTAATGAATCATTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128476.2 ENSRNOG00000057782 ENSRNOT00000080865 2 1 1 60 7 121135656 121135674 ATCAAGTCCTTCCTGTCCT 58 121135698 121135716 CACACCTGTCCTTACTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000055044 ENSRNOT00000080505 3 1 1 60 3 129407086 129407105 TTTGGAGCAGACTCATAGCC 60 129407127 129407146 AGGACCTCAAAGTACCTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017768.4 ENSRNOG00000059022 ENSRNOT00000089085 1 1 1 72 15 30785276 30785294 TACTCCTAGGCCTTCACCT 59 30785468 30785486 CTTTGTTTCACCTGCTGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019572.1 ENSRNOG00000056176 ENSRNOT00000082995 2 1 1 61 15 109346027 109346047 CAAAGCAACACTAACTTCTGG 58 109346070 109346089 TTCTAAGCAAACACAGGCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035641.2 ENSRNOG00000059625 ENSRNOT00000090081 3 1 1 81 12 20668972 20668990 CTGCAAACAACAGAAGGCA 59 20669033 20671355 TGGTAGTACTGAGAGCATGTG 59 Novel Rattus norvegicus 81 Rn60_X_0742.1 ENSRNOG00000051134 ENSRNOT00000076427 3 1 1 84 X 73370313 73370333 CTATAGCCAAGAACTTGCCTG 59 73370376 73371452 CCAGTTAACAGTATCAAGGTGG 59 Novel Rattus norvegicus 81 U12 ENSRNOG00000052392 ENSRNOT00000085863 2 1 1 60 2 28343120 28343139 GTCCTCACTGCTAATGTGAG 58 28343162 28343180 GGTGGTCACCTTAAGGGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000060947 ENSRNOT00000085467 3 1 1 60 2 161564699 161564717 TCATGGACAGTTTGAACGC 59 161564740 161564759 CTCAGACAGGTGTAGTCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044959.1 ENSRNOG00000056298 ENSRNOT00000092166 2 1 1 78 20 28354908 28354926 ATCCTTCTGGACGACTCTG 59 28354846 28354864 TATACCCACAGCTGTCACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07018132.1 ENSRNOG00000045597 ENSRNOT00000085508 1 1 1 60 15 42270946 42270967 CTTCACCAACAGAATACAAGAG 57 42270907 42270928 TTCTATGGAATCTTCTGCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC106505.1 ENSRNOG00000042948 ENSRNOT00000067348 1 1 1 82 1 169160103 169160132 AGTTCATACTGCTCTCCATGAG 60 169160042 169160060 GTGTGGACACAGAGACTCC 60 Novel Rattus norvegicus 81 AC110851.1 ENSRNOG00000061706 ENSRNOT00000078340 3 1 1 72 1 217746802 217746820 GGAAACTAAGGAGGGTTGG 57 217746860 217746878 CAACCCACTATTGAGTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07004799.1 ENSRNOG00000010769 ENSRNOT00000014369 2 1 1 61 1 157921175 157921193 CACTGCAACGTTTGATCTG 58 157921132 157921150 CAAGTCCAAGCGGAAAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054798 ENSRNOT00000080958 2 1 1 60 1 75508715 75508736 GTGTACCTGACTAATCTTGGTG 59 75508754 75508775 GTATAGAGGAGATAGGGAGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053777 ENSRNOT00000080526 2 1 1 62 2 71792443 71792461 CATAGAGGTGTCCCAGGTG 59 71792486 71792505 ATAGCCTACTCTCACTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098750.6 ENSRNOG00000058618 ENSRNOT00000081189 3 1 1 80 2 188691514 188691532 GTACACTGCTAGGGAGGTC 59 188691575 188691941 TAGAGGGCTTGGATGTAGAG 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000055969 ENSRNOT00000078443 2 1 1 60 6 115712512 115712530 CAAAGGCAATCTGCCTGTG 60 115712470 115712490 ATCAGCTGATTCAACTCTGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052468 ENSRNOT00000077257 2 1 1 60 1 76751046 76751068 GGAACGATACAGAGAAGATTAGC 59 76751088 76751106 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Col4a4 ENSRNOG00000014851 ENSRNOT00000075968,ENSRNOT00000041176,ENSRNOT00000077503 2 3 4 94 9 88343455 88343473 TTTCAGATGGACCGAGTCC 59 88336266 88341873 CATATTTCTTGCTGCTCCCA 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061783 ENSRNOT00000090741 2 1 1 60 2 61359584 61359602 GTGTCAGTAGGTGGCAGAG 60 61359542 61359562 TTCATAGGTCAGAACACCGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017870.2 ENSRNOG00000054808 ENSRNOT00000084376 1 1 1 80 15 32060793 32060984 AGATTTGCTGGGTGAGAGG 59 32061028 32061046 TCAGAGCAGGATTGGTTCC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000060704 ENSRNOT00000088157 1 1 1 60 5 61714631 61714649 CAACCCAACTGATGAGGAC 58 61714673 61714691 TACACCCTTGACCTAAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060704 ENSRNOT00000088157 3 1 1 60 5 61714543 61714561 ATCACCAGGGTTGATTTGG 58 61714585 61714603 CATGAGGGAGGAAAGGGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042792.1 ENSRNOG00000060310 ENSRNOT00000083521 1 1 1 144 19 9112637 9112655 CATCTCTGCTGAGGGTGAC 60 9112763 9112784 CAGGGTGATGTTCCGAGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07049347.1 ENSRNOG00000055254 ENSRNOT00000084226 3 1 1 92 5 117948628 117948647 AGCCATGTGATTCTCAATCC 58 117948700 117948724 GAACTGCTGTATCTCATTGGG 59 Novel Rattus norvegicus 81 AABR07070559.1 ENSRNOG00000054463 ENSRNOT00000081474 3 1 1 80 8 74982446 74982464 GTTTCACAGAACTCCCGTC 59 74982504 74982528 CTACCTACAGGTAAAGTCAACAG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060877 ENSRNOT00000081491 1 1 1 60 9 26957092 26957110 GAGAGGAGAAAGGCTACGT 59 26957050 26957069 GAGGACCAACTAATAGCACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0899.1 ENSRNOG00000051222 ENSRNOT00000075913 2 1 2 130 13 84954976 84954994 AATCGACCACAGATGAGGC 60 84937285 84954883 ATCCCTTGTTGTCCTTCCTG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058076 ENSRNOT00000078545 1 1 1 60 9 29505858 29505877 GCATTGCAGATATGACTGCT 59 29505900 29505918 AACACTGAACACAGACCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055373 ENSRNOT00000091564 3 1 1 102 5 133927455 133927473 AAGGTGTCTTTCCCAGGAC 59 133927371 133927392 AGGAGAACATGAACATAATCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000061755 ENSRNOT00000086489 2 1 1 64 1 3952655 3952673 GTTGAGTTCAGTTCAGGGC 59 3952609 3952627 AGCCAATTTCCATGTCCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058913 ENSRNOT00000091008 2 1 1 63 1 144947067 144947085 GTGTCAGTAGGTGGCAGAG 60 144947112 144947130 ATGTTCACAGGTCAGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058913 ENSRNOT00000091008 3 1 1 64 1 144947067 144947085 GTGTCAGTAGGTGGCAGAG 60 144947113 144947131 GATGTTCACAGGTCAGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017798.2 ENSRNOG00000060147 ENSRNOT00000089064 1 1 1 80 15 31178373 31178573 GGCTCCAATTAAACTGGGTG 59 31178616 31178634 CTATGGATCCCTCTGGGAC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054921 ENSRNOT00000085121 1 1 1 60 1 21165711 21165730 TGTGCATCAGTAGGTAGCAG 60 21165753 21165771 TGTTCACAGAACACTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015737.1 ENSRNOG00000049420 ENSRNOT00000070952 1 1 1 60 14 73167601 73167621 GAAAGTTTCCTCACAGAGTCC 59 73167642 73167661 AGAGTGCCTGTCTTATCGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049886.1 ENSRNOG00000046811 ENSRNOT00000070940 1 1 1 60 5 142559356 142559376 TTTACTCTGTAGCCTAGGCTG 59 142559316 142559334 TGAGTTTGAGGCTAGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049886.1 ENSRNOG00000046811 ENSRNOT00000070940 3 1 1 60 5 142559356 142559374 TACTCTGTAGCCTAGGCTG 58 142559314 142559332 CATGAGTTTGAGGCTAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102547954 ENSRNOG00000051364 ENSRNOT00000076931 3 1 1 84 10 70134367 70134387 GAACCTTAAGTCGGCTTTGTG 60 70133707 70134321 TGATGAAAGGGCTGGACTC 59 Novel Rattus norvegicus 81 snoZ6 ENSRNOG00000057911 ENSRNOT00000088985 3 1 1 61 20 11478099 11478117 TGAAGTTGCCTCAATCCGA 59 11478142 11478160 AGACAGATAAGACGCCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000052544 ENSRNOT00000082610 3 1 1 68 14 5375516 5375534 GTTGAGTTCAGTTCAGGGC 59 5375466 5375487 TCTTAGTCACTTTCAATGTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058210 ENSRNOT00000077410 2 1 1 60 5 144877395 144877414 GGGACTATGTCTTTGCTCAG 58 144877354 144877375 GCTAGGCTCTAATCATTCAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000054476 ENSRNOT00000080214 2 1 1 60 3 86024970 86024988 GTGTCTGAGACATCTCCTG 57 86024928 86024946 TTCCATTCCACTTCAGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057525 ENSRNOT00000090274 1 1 1 60 14 58613209 58613230 AACGATACAGAGATTAGCATGG 58 58613251 58613269 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054412 ENSRNOT00000081393 2 1 1 61 5 159609539 159609562 GATACAGAGAAGATTAGCATGACC 59 159609581 159609600 GCAACACTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056982 ENSRNOT00000088733 2 1 1 69 4 72423076 72423095 GCTTTGGCAGTACATATCCT 58 72423126 72423145 GTAATACTTGCAAAGGGCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013802.1 ENSRNOG00000058222 ENSRNOT00000081427 1 1 1 60 2 257462533 257462553 GAACTACCTTATTCTGCACCA 58 257462575 257462596 GTGATGCTAGTGTCTCCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058116.1 ENSRNOG00000004906 ENSRNOT00000006506 3 1 1 60 7 100701539 100701557 AAAGGAAGTGCTGAATGGT 57 100701580 100701599 TTGGTACACTAAAGCAGAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Fam73a ENSRNOG00000056332 ENSRNOT00000089370,ENSRNOT00000090367 1 2 2 80 2 257514512 257537514 GAATGACACTGACAAAGACAC 58 257514452 257514470 TCAATGTTCGCTGTGTCTG 59 Novel Rattus norvegicus 81 AC106932.1 ENSRNOG00000029083 ENSRNOT00000052241 3 1 1 60 4 152544379 152544397 CATCGAGAGGAGAAACCAC 58 152544419 152544439 CATAGTCCTTAACCACTACGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054473.1 ENSRNOG00000040443 ENSRNOT00000062196 3 1 1 65 3 155351398 155351419 CTAGACATTTGACCTGTCTGTC 59 155351445 155351463 GACAGACAGACCGACAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000058078 ENSRNOT00000090487 2 1 1 60 13 105109974 105109995 CCAATTAAACCAGTCAGGTTCC 60 105110016 105110034 CTGTTTATGGCCCTTGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028886.2 ENSRNOG00000054681 ENSRNOT00000091830 3 1 1 82 17 89773062 89775070 GACTCACAGAGGAGAAATTCTC 58 89773001 89773022 GCACCTTGTTGAAGAATAAGGT 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000057006 ENSRNOT00000081414 1 1 1 60 13 34536477 34536496 AGAACTTCAAGACACTGAGG 57 34536436 34536456 GGGAGATCTTTCCATCTTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059797 ENSRNOT00000087663 2 1 1 60 13 80950666 80950686 CCTAGAGTAATTGCAGGTGTG 59 80950626 80950644 TCTTCTCTGCCACCTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC095959.1 ENSRNOG00000058957 ENSRNOT00000079940 1 1 1 60 3 78134744 78134765 CCTGGCTTTCTTGTCTTTACTG 60 78134705 78134724 AATCATCTTGGGTGTCATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054248 ENSRNOT00000089641 2 1 1 60 20 20175368 20175389 TTCATAGCTTCAGCTATGACAG 58 20175329 20175347 TGTATAACCCAGGAGCACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061001.1 ENSRNOG00000051739 ENSRNOT00000082031 1 1 1 80 4 102489953 102490089 TCTGGACATCAGGTATACAGTG 59 102490128 102490148 AAACACTTTCTCCAGGAGAGG 60 Novel Rattus norvegicus 81 SNORA42 ENSRNOG00000057544 ENSRNOT00000082436 2 1 1 60 13 9405629 9405648 CTTTGAACCTTTCACAGTGC 58 9405671 9405689 AGGCCATACAATGGTTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA62 ENSRNOG00000061901 ENSRNOT00000086861 1 1 1 60 3 146447901 146447922 TAAAGCAGGATTTCGCTAACAC 59 146447942 146447961 ATCACTACCGAACTCCAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000052760 ENSRNOT00000085030 1 1 1 60 20 32094678 32094701 TAATATCTGATCGTCCTCTATCCG 59 32094718 32094738 ACTCCTAGTTCCAAAGATCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072283.2 ENSRNOG00000059673 ENSRNOT00000081208 1 1 1 64 12 24744876 24744894 CAAGGAAACATGACCGCTG 60 24744826 24744845 TGGCTCTTTGTGTTAATGGG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA40 ENSRNOG00000058161 ENSRNOT00000080708 3 1 1 66 3 31204409 31204427 TTTGTTCAAAGTGTGGGCA 58 31204457 31204475 GTTGTGGATGGCAAATGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059285 ENSRNOT00000085955 3 1 1 62 14 23935956 23935974 ACCACGATTACAACGTTGG 59 23935912 23935930 TCATTGTACCTGGTGTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07022014.1 ENSRNOG00000043772 ENSRNOT00000069039 1 1 1 67 13 102731776 102731794 TAAAGGCTGGACCTAGACG 59 102731727 102731746 GAGTTAGACGGTGGTTACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07020711.1 ENSRNOG00000050665 ENSRNOT00000075571 3 1 1 60 13 36335086 36335104 TCCTTTCTTCTTTGCCTGC 58 36335044 36335063 GGAAGTCCAAGGATCTAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057954 ENSRNOT00000082134 2 1 1 60 15 1315045 1315066 TGATTAAGTGAATCTGGCTGGT 60 1315006 1315024 GCACATGGAGTAGTGAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055703 ENSRNOT00000083760 3 1 1 69 4 14815836 14815854 GGGTGTTGTGTCACATGTG 59 14815785 14815809 CAGAACACTGAGTTTAGACATAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057373 ENSRNOT00000078763 1 1 1 60 13 32174747 32174770 TAGTCAAGGGTAGATGAATAGCTG 60 32174787 32174807 CCTTGAGAGTTTGTTTGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000059422 ENSRNOT00000077983 2 1 1 60 3 154847965 154847983 AAAGTGATCTTGGCTGCCT 60 154847923 154847941 TCTTTCGGCATGATTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055133 ENSRNOT00000090864 3 1 1 60 1 254313723 254313743 GCTGTGTCACATGTACATCAG 59 254313683 254313707 AATAGACTGTAGACCTAGTATCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA3 ENSRNOG00000052856 ENSRNOT00000091639 1 1 1 60 10 74302009 74302030 AGTATCTTTCGGCTGTAGAAGG 60 74301970 74301988 CATGCTGTCAGAGACCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142154.1 ENSRNOG00000050758 ENSRNOT00000072193 2 1 1 60 1 83436575 83436594 ATATCCACAGAACATGACCC 57 83436534 83436552 AAAGCCCATTCAGCATCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000051561 ENSRNOT00000085904 2 1 1 60 1 200156826 200156844 TCAGTTCAGGGCAATTTCC 58 200156784 200156803 CTCAGCCAATTTCAATGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052848.1 ENSRNOG00000061249 ENSRNOT00000077487 1 1 1 60 3 79151539 79151559 GGATTGTGATGGCCAACAG 59 79151497 79151516 GAGGACACCAAGATGAAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000054779 ENSRNOT00000083598 3 1 1 60 10 38811711 38811729 ATGTATGTCCCTTGCCCAC 60 38811669 38811689 TTATCTGGAGGTTCTAGCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047580.1 ENSRNOG00000043726 ENSRNOT00000068993 2 1 1 64 5 38293100 38293118 CAATGTTTGACAGGCCCAG 59 38293142 38293164 GACAGAGTCAAGCACAAATACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017662.4 ENSRNOG00000058237 ENSRNOT00000084501 2 1 1 80 15 29841114 29841352 CTCCAATTAAATTGGGTGAGCA 59 29841055 29841073 AGCTATGGATCCCTCTGGA 59 Novel Rattus norvegicus 81 snosnR60_Z15 ENSRNOG00000059509 ENSRNOT00000083292 2 1 1 60 13 78854992 78855011 TAGTTCAGCAGACGTGACTC 60 78855031 78855052 CAGATACATCAGATAGGAGCGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060131 ENSRNOT00000087108 2 1 1 60 20 9465065 9465089 GAAGTTAGAACGATACAGAGATCAC 59 9465029 9465048 CTTGAATTTGCATGCCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141516.1 ENSRNOG00000054109 ENSRNOT00000077156 2 1 1 108 11 87118388 87118408 CTCCAGACGGTGAGATCTC 59 87118298 87118319 ACACAGCAATTTAGACTAAGGG 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000052133 ENSRNOT00000091631 3 1 1 74 13 68441069 68441087 AATGAGGTTTATCCGAGGC 57 68441013 68441032 GACTGCTTCAAAGATACACG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060474 ENSRNOT00000091544 1 1 1 60 10 72243991 72244013 GGAACGATACAGAGAAGATTAGC 59 72243953 72243971 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061558 ENSRNOT00000086826 2 1 1 60 3 93005645 93005666 ATACAGAGAAGATTAACACGGC 58 93005606 93005625 AGAAAGCTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051595 ENSRNOT00000091617 1 1 1 60 15 36604889 36604907 ACTCACATTGGAACGACAC 58 36604930 36604949 GATGTGCATGTTATCCTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058936.1 ENSRNOG00000052450 ENSRNOT00000089690 1 1 1 111 7 144725349 144725369 CCAGAATTCAGAGCTCTATCC 58 144725446 144725464 CTACAGAGCATCGGAGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AC136025.2 ENSRNOG00000061055 ENSRNOT00000083834 2 1 1 80 7 59462495 59462513 ATTTCCGAAAGCTGTGAGC 59 59463421 59463442 CACTGGCTTGTTTGTTGTG 58 Novel Rattus norvegicus 81 AABR07054266.1 ENSRNOG00000005920 ENSRNOT00000007780 3 1 1 96 3 145831638 145831657 CTTCCATTTGCGGAACGAG 60 145831717 145831735 TTCACAGACCATCATCCCA 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_X_0713.4 ENSRNOG00000051298 ENSRNOT00000076301 2 1 1 60 X 70423022 70423042 TTCTCCAGACAATACTTGCAC 58 70422982 70423004 GTATAGAGGTCAGACAGAAAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD74 ENSRNOG00000054347 ENSRNOT00000088715 3 1 1 60 13 78852742 78852762 TGACTCTTGCAATGATGAAGG 59 78852781 78852802 TGGTATTCATCAACAAGGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047036.1 ENSRNOG00000061874 ENSRNOT00000091550 2 1 1 105 5 16464402 16464420 CACACTCAAGCACAAACAC 58 16464488 16464507 TATGTTTGCGTGAGTCTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052042 ENSRNOT00000084405 3 1 1 60 3 103948402 103948421 GCTGTGACATCTGTCATCTC 59 103948442 103948462 TAGAAGACATCTGTCTAGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA22 ENSRNOG00000060097 ENSRNOT00000091851 2 1 1 61 18 70372892 70372910 CCTTGGCCTTGACTTTGTG 59 70372933 70372953 AGGACACAGTACTTTCAATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA69 ENSRNOG00000056426 ENSRNOT00000091170 3 1 1 60 20 45302003 45302022 AGCAGGTAGCAATTACAGTG 58 45301962 45301982 TCTTTCAGCAGGATTAATGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097890.3 ENSRNOG00000059818 ENSRNOT00000085800 2 1 1 70 18 51300151 51300170 TGAGATCCATCTGTAAGGCA 58 51300100 51300118 ATGTTACCTCCCACAATGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017936.1 ENSRNOG00000050460 ENSRNOT00000091428 3 1 1 80 15 34896616 34896649 CTGGAGTGACAGAACGAGG 60 34896554 34896573 AAGCTATCGTCATAACGCCT 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000053776 ENSRNOT00000084844 3 1 1 60 19 1480533 1480555 CAATACATCCTGATCTCAGAAGC 59 1480495 1480517 TTTCCCATCCAAGTACTATCCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045175 ENSRNOT00000070442 2 1 1 60 10 8469923 8469942 AACCACCCTAAATGTACTGC 58 8469965 8469983 TACTAACTAGGACCCACCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052058 ENSRNOT00000082842 1 1 1 60 7 12619434 12619452 GAGAAGATTAGCATGGCCC 58 12619392 12619410 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021706.1 ENSRNOG00000049253 ENSRNOT00000074216 1 1 1 60 13 86733172 86733190 GAACAGGTCACCTGATGGT 59 86733212 86733232 CAACTCATAAAGGCTGAAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061581 ENSRNOT00000090289 2 1 1 60 X 144720307 144720325 GATTCGGTTGATCTGGCTG 59 144720265 144720283 ATGAAATGGTGAGGGAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_1141.3 ENSRNOG00000051073 ENSRNOT00000076494 1 1 1 80 X 115601046 115606868 CAAGATGGGTAATGTCCTGAG 58 115600986 115601008 GAGGACATCAGATCTCATTACAG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000060797 ENSRNOT00000083051 2 1 1 60 18 34023737 34023760 GATACAGAGAAGATTAGCATGGTC 59 34023700 34023719 CAAAGGACACTTACTTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056999 ENSRNOT00000085163 1 1 1 60 5 145352649 145352668 AAGACTGAAACAGCACAGAG 58 145352608 145352627 TCATGATTTGCAGGTCACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034421 ENSRNOT00000052544 3 1 1 60 7 56875559 56875580 CACCTGATCTTGTCTAATCTCG 59 56875520 56875538 CCCATCCAAGTCCTAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018048.2 ENSRNOG00000059279 ENSRNOT00000085358 1 1 1 80 15 37276453 37276472 TACAGGATCTTGGGACACAG 59 37268177 37268458 TGAAGCAAAGGGATTCCCA 59 Novel Rattus norvegicus 81 AABR07061962.1 ENSRNOG00000061170 ENSRNOT00000082988 2 1 1 60 4 155169757 155169780 CAAGACTCCCATTATGATCCAG 58 155169801 155169819 ATGAGTTCTCTGCTTGGCT 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000053782 ENSRNOT00000088817 3 1 1 60 5 106424779 106424797 GCTCACTGTAAGGGATGTG 58 106424819 106424839 AGCATGTCAAGCATGTATTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044429 ENSRNOT00000069696 2 1 1 60 15 46039549 46039570 AGCCATATTACTCCCAAATGTG 59 46039590 46039609 GCCTGACCTGTTTAGTTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037054.1 ENSRNOG00000003789 ENSRNOT00000005028 3 1 1 69 X 10932270 10932290 AGAAGTCAAGGGATGTAACTG 58 10932220 10932243 GGCTTATCCTCATACATCTTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000060150 ENSRNOT00000091289 1 1 1 61 15 83765903 83765921 CTTATCCGTTGCACTCCAG 58 83765860 83765879 GCTGAATTTCCCATCATTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064304.1 ENSRNOG00000046049 ENSRNOT00000072488 2 1 1 80 6 74913282 74913300 TGTGGTGTCAAACACTCCA 59 74913344 74913364 TCACATCTGGGATGATGCT 59 Novel Rattus norvegicus 81 AABR07053713.1 ENSRNOG00000056903 ENSRNOT00000089018 3 1 1 111 3 121884875 121884896 GGAAATGAACAAAGCAAGAGG 58 121884968 121884987 CAGAGGGAACCTTAAAGCTG 58 Novel Rattus norvegicus 81 AABR07030184.1 ENSRNOG00000057449 ENSRNOT00000077390 2 1 1 93 10 74762859 74762898 GGTATACAGAGGTTTCAGTGTG 59 74762952 74762970 AAAGATCACAGACCTTGGC 58 Novel Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054382 ENSRNOT00000090906 2 1 1 84 X 49814544 49814562 AAGAGTGGCTTCTGGAGTG 59 49814607 49814628 TTTCCATTTCTTTCCTAGCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000060046 ENSRNOT00000085028 3 1 1 66 10 43649717 43649735 CAAGTTCTGCTGCTCATGG 59 43649764 43649783 GTCTGCAGCCAAACTTATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065699.2 ENSRNOG00000055475 ENSRNOT00000083025 2 1 1 80 6 139531566 139531586 CCTATACCTGCAAATGGACAC 59 139531625 139531689 TGGTCACTAGTATCTGTGTCTG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061787 ENSRNOT00000078826 2 1 1 70 X 113757302 113757320 TACAGGTGTGGCTACTGTG 59 113757250 113757270 TGAGCATAGAAATAGCCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rdh5 ENSRNOG00000053850 ENSRNOT00000081756 1 1 1 80 7 3340896 3340915 TGCTGGATATCACTGATCCC 59 3340708 3340853 CAAAGAGCCCAGTTTCTCC 59 Novel Rattus norvegicus 81 AABR07054562.2 ENSRNOG00000054123 ENSRNOT00000084056 2 1 1 60 3 160572499 160572518 ATACTGTCTTGGTCTTTGGC 58 160572541 160572559 GGTAAGGAAATCAAGGCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055262 ENSRNOT00000080640 1 1 1 61 7 60550071 60550091 AGACACGATACAGAGATAGCA 58 60550030 60550048 AACGTTTCACGGATTTGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC679803 ENSRNOG00000051949 ENSRNOT00000082081 3 1 1 60 5 137635497 137635516 ATCTGTGGTTTCCTTTCCTC 58 137635456 137635476 CACAATATGGCAGACTCATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056510 ENSRNOT00000078301 2 1 1 63 18 3530016 3530035 TATGGCTTCCATGTCATGTG 58 3529972 3529991 GAGTGTACACATAGCCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054178 ENSRNOT00000081350 2 1 1 70 3 70877750 70877769 TTAGGTTTGGCTGCTTTGTC 59 70877797 70877820 CACTTAATGTAGACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060856 ENSRNOT00000088961 2 1 1 60 X 103063856 103063878 TAGGTATCAGAGAAGAGGAAGAC 58 103063818 103063839 TCAGATGTTCATGTATCAGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052961 ENSRNOT00000085433 1 1 1 60 X 44899665 44899686 GGAGATACTATGCTCATGAAGG 58 44899704 44899725 TATACAGAGTGCAATGGATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059355 ENSRNOT00000079723 1 1 1 60 X 16254135 16254153 GAGAAGATTAGCATGGCCC 58 16254177 16254195 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000058936 ENSRNOT00000091254 1 1 1 60 18 65612044 65612065 AGTCAGTTACAGATTGAAGTCC 58 65612005 65612024 TTGTCAAGTGCAGTAGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042733.2 ENSRNOG00000060024 ENSRNOT00000092016 1 1 1 82 19 6026880 6028624 TTAAGAAGGTACTGCCGTG 57 6026816 6026834 CATCTAAGAGGACTGGTGC 57 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060935 ENSRNOT00000086606 3 1 1 60 15 86819362 86819380 GAGAGGCTATGCCTATGCT 59 86819320 86819344 TTAGGCTACTACTCATTTAGGTGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029111.1 ENSRNOG00000046888 ENSRNOT00000074560 3 1 1 60 10 7696254 7696272 TGCAGCTCTGACTATCTCG 59 7696295 7696314 TCTCTGTGAATTTGAGGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000055806 ENSRNOT00000087435 2 1 1 60 6 980373 980391 GCGTATGCATATCTTGCCT 58 980414 980433 CTCCAAGGGTATTTCATGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017786.1 ENSRNOG00000055146 ENSRNOT00000086675 2 1 1 60 15 31072368 31072386 TGGTTCTTGTCACAGAGGG 59 31072407 31072428 GAATAAGTAGTCTGGTAGGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055040 ENSRNOT00000082941 1 1 1 60 4 104836179 104836197 GGATCAGTAGGTGGCAGAG 59 104836219 104836239 TTCACAGGTTAGAACACAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_0427.1 ENSRNOG00000057689 ENSRNOT00000084857 1 1 1 60 1 41325006 41325025 AAGTTCAGGGAAGATAGCGG 60 41325045 41325066 GGCACTTATAGGAACATCACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065837.1 ENSRNOG00000055375 ENSRNOT00000078672,ENSRNOT00000081337 2 2 2 60 6 143194561 143194581 CCAAGCATTCCTCAAGATCAC 59 143194521 143194540 AGCACAGTAGTATGTGGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051961 ENSRNOT00000090690 1 1 1 60 4 165500345 165500363 GCATCAGTATGTGGCAGAG 58 165500303 165500321 GTCGTGGGTGAGAATACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000054762 ENSRNOT00000078371 3 1 1 60 X 154716674 154716694 AAGTAGAAGCTCTTAAGGGCA 59 154716716 154716734 GAGTGACTGACATCCTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA72 ENSRNOG00000058540 ENSRNOT00000089909 2 1 1 61 X 71048340 71048364 GCTCAGCACTGACTATATTAATGTC 60 71048303 71048327 TTTATAATACCACACCTAGGTCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562948 ENSRNOG00000013975 ENSRNOT00000018934 3 1 1 80 1 48025022 48025040 AAATCAACGAGGCCTATGC 58 48025083 48025421 CATCGATGTTCACCTTCTCG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000056912 ENSRNOT00000091181 2 1 1 60 15 35396894 35396914 CACATGTACATCAGTAGGTGG 58 35396936 35396954 GTCAGAACAGTGAGTGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055034 ENSRNOT00000084231 3 1 1 60 4 103410305 103410323 CAGTGCTGTTTCACATGTG 58 103410263 103410284 CTGGGTAGACATAGTGTATCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA31 ENSRNOG00000055553 ENSRNOT00000080370 2 1 1 60 15 57894100 57894119 CTGCATCCACTGATAGACCT 59 57894142 57894160 GCATCCTAGTGCAAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Stil ENSRNOG00000057760 ENSRNOT00000081075 1 1 1 80 5 133822713 133823437 CCATTAGTGGGAATCTGGC 58 133823479 133823499 GAACATGTATCTCAAGCAGCA 59 Novel Rattus norvegicus 81 SNORA44 ENSRNOG00000061642 ENSRNOT00000092004 2 1 1 61 20 9904345 9904363 AGAGACTTTGACAGCCCAG 59 9904302 9904322 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006333.1 ENSRNOG00000050414 ENSRNOT00000074256 3 1 1 80 1 229206225 229206249 CCTATGGTACAAGTTGATAAGGGA 60 229206168 229206191 CTCAGGAATTTCTCTGAGAATCAC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000055173 ENSRNOT00000089437 3 1 1 60 15 35649501 35649522 CAGTCAAGGGTATATCAGTAGC 58 35649462 35649480 CCTTGAGAGCTTGTTTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061838 ENSRNOT00000085717 2 1 1 68 15 14527532 14527550 CATATGGCTGCTGTGTCAC 59 14527482 14527503 GCTTAGATGTAACCTTTCTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002997.2 ENSRNOG00000057563 ENSRNOT00000090911 1 1 1 110 1 92090532 92090551 GAAAGTGGCAAATGGGAAGG 60 92090440 92090459 ATGAAGCCCATTCCCACTC 60 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000055587 ENSRNOT00000090311 3 1 1 60 15 7954190 7954208 CATCAATGTGGTGACCTCC 58 7954232 7954250 CCAGTTCACCCTCCTTAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054752 ENSRNOT00000084786 1 1 1 60 15 26297803 26297823 TCAAGGGTATACGAGTAGCTG 59 26297843 26297863 TGGAAATGAGAGCTTGTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056822 ENSRNOT00000086741 3 1 1 62 5 39954117 39954135 TCAGAAGTGGGTTGGTAGG 59 39954073 39954094 AGTCAGAACACTGAACATAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097791.1 ENSRNOG00000052708 ENSRNOT00000090145 3 1 1 69 7 143224893 143224911 CCTCATACTGGGCCTTGAC 60 143224944 143224962 CTCTCCATGGACAACAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051473 ENSRNOT00000091194 1 1 1 60 20 51711736 51711757 TGTGTCACATGTTGCATAAGTG 60 51711697 51711717 AAACTTAGCGTAGACATAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045387 ENSRNOT00000070654 2 1 1 60 20 7231374 7231395 ACGTGATCTCATATGATCTCAG 57 7231335 7231353 ACCCTCCAAGTATGAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA29 ENSRNOG00000053612 ENSRNOT00000081975 1 1 1 63 20 50371799 50371817 AGTGCCGTGATCTGAAGAG 60 50371839 50371862 CTGTTCAGCCATTTCATATAGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041762 ENSRNOT00000063515 2 1 1 60 11 37986772 37986791 TGCTCTGTATACACCTGGTC 59 37986731 37986750 CTACCAAGGTCTGACTCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD35 ENSRNOG00000052300 ENSRNOT00000080046 1 1 1 60 1 101117502 101117521 GTCTTCAGATGTCCTCCAGG 60 101117461 101117479 TTTATGGCATCAGCTTCGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115273.1 ENSRNOG00000048185 ENSRNOT00000070965 1 1 1 67 19 56088735 56088753 CTTCTCTGTGTAGCCCTGG 60 56088784 56088802 ATCTCTGAGTCTGAGGCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060871 ENSRNOT00000087024 2 1 1 60 5 5838810 5838831 ATCAGAACGATACAGAGAAGCT 59 5838851 5838870 CATGAACTTGCGTGTCTTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060717 ENSRNOT00000085490 3 1 1 65 18 43591335 43591357 GGGACATACCATAATCAAGAAGG 59 43591292 43591311 CATATCCAGTGTGCAGTGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031787.1 ENSRNOG00000048913 ENSRNOT00000073301 1 1 1 64 18 34788166 34788184 CCTCTTCCTCTTCCTCCTC 58 34788212 34788230 CCAGAAATGGAGCTCTGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC107331.1 ENSRNOG00000059331 ENSRNOT00000089760 2 1 1 80 1 170080673 170080696 GAGATTTCACCTCACATGCG 59 170080738 170080757 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 SNORA72 ENSRNOG00000058104 ENSRNOT00000080360 2 1 1 60 19 55619176 55619194 GGACAGGCTAAACATCACC 58 55619134 55619153 TAGGGAAAGAACTCGGTTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA13 ENSRNOG00000061393 ENSRNOT00000091576 2 1 1 60 11 84548933 84548951 TTGTAGCCTTTCCTTTCCC 57 84548891 84548910 TTGTTACTTATGCAGCTCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053417 ENSRNOT00000080256 3 1 1 97 18 80170904 80170923 ATTCCGTGATCCAGAAGGTG 60 80170826 80170845 CGATGTGTTCGGTATTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000058685 ENSRNOT00000086075 3 1 1 61 3 138456632 138456651 CTTGGTTCAGAGCAACTTCC 59 138456674 138456693 CTCAGCCAATTTCAATGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035926 ENSRNOT00000054049 1 1 1 60 18 59604051 59604069 CTCAGAAGCTAAGCAGGGT 59 59604009 59604027 GTAGTCACAGGCTGTCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045322 ENSRNOT00000070589 3 1 1 60 5 59194206 59194224 ATCTCAGAGGCTAAGCAGG 59 59194247 59194266 GAGAATGGCTTATCTCCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA50 ENSRNOG00000051832 ENSRNOT00000088879 2 1 1 60 19 9718646 9718668 GATGTCTTACTTGTAGCTCAAGG 59 9718688 9718706 GAAGAGCCCAGTTCTTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052483 ENSRNOT00000077905 1 1 1 60 5 128800433 128800452 GAGCCCTAGATGATCTTGTC 57 128800392 128800411 TTACTCATACACCCTGACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055656 ENSRNOT00000087571 3 1 1 60 6 5216256 5216275 CATGTACTGATCAGCAGGTG 59 5216295 5216316 AGGTTAGAACACTGAGCATAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA4 ENSRNOG00000052780 ENSRNOT00000088231 1 1 1 60 20 41767471 41767492 TAACCAATTCAGGCTATTTGGC 59 41767511 41767531 GTGGTATAGTCCACTGTGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026797.1 ENSRNOG00000018554 ENSRNOT00000025031 1 1 1 60 17 1909861 1909879 CATCGTGATTCCTGTCCCT 59 1909819 1909840 TCCCATTGTTTCCAAGATTACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051898 ENSRNOT00000085878 3 1 1 60 11 50431624 50431642 CCACTTCTCCTAGCAGCAG 60 50431582 50431602 CATAGGTCAGAACACTGAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000056590 ENSRNOT00000089710 3 1 1 60 7 80951073 80951093 TTTATGGAATCCATGGTCCCT 59 80951113 80951133 AGAAAGTCTGATTAGGGCCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC107096.1 ENSRNOG00000055642 ENSRNOT00000086087 3 1 1 61 7 117326392 117326410 CCTCTCAATCTGATGCCGA 59 117325584 117325603 GAAGAGATCAGGTGCAAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07004134.1 ENSRNOG00000056928 ENSRNOT00000079160 2 1 1 80 1 126633126 126633152 AATTAGAACAAAGCCAGTGGTC 59 126633067 126633087 ACATAACCGACTCACTACAGG 59 Novel Rattus norvegicus 81 AABR07051548.2 ENSRNOG00000057376 ENSRNOT00000077741 1 1 1 90 3 16753742 16753966 TGGGTATATGGTACCTGTGG 58 16754016 16754037 TGCAGTTTATAGTGACCATCTC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060993 ENSRNOT00000091180 3 1 1 60 7 6059086 6059104 TGTGTCACATGTGCATCAG 59 6059123 6059146 TACACTGAGTGTAGAAGTAACCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360355 ENSRNOG00000051726 ENSRNOT00000080172 1 1 1 81 X 155417338 155418163 CAGGAATTACTATCAAGACAGACAC 59 155418199 155418220 AATTTCCTCTTGTACTTGCTGG 59 Novel Rattus norvegicus 81 AABR07034498.1 ENSRNOG00000052877 ENSRNOT00000087747 3 1 1 60 11 73930941 73930959 GCTTCCCAAGCTCTATGTC 58 73930982 73931001 GACCTTGCTATGAATGGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052321 ENSRNOT00000078307 1 1 1 60 11 55842818 55842836 ATCCGCGTTCATTCTTCTG 58 55842776 55842795 GTTCTTCTGTTGCAGAAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059060 ENSRNOT00000079289 3 1 1 60 11 80898279 80898299 AAAGAGGAGTGAGGCTATGTC 59 80898317 80898339 CTGATAATCCAGATGTCTACAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053493 ENSRNOT00000088359 3 1 1 60 17 18319726 18319748 GATACAGAGAAGATTAGCATGGC 59 18319768 18319786 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000085052,ENSRNOT00000088581 2 2 6 80 10 74882926 74882947 ATCTATCAGTTCCCAGATTGTG 58 74882988 74883173 TGGGATGCTTTCCTTTAGG 57 Novel Rattus norvegicus 81 7SK ENSRNOG00000060092 ENSRNOT00000086170 3 1 1 73 9 107804416 107804435 TGATCTGGCTGTGAAATCTC 58 107804362 107804381 AAATCCACCAAGTCAGTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051814 ENSRNOT00000078607 2 1 1 60 4 84025545 84025563 CACATGTACAGCAGTAGGG 58 84025503 84025523 ATCAGAACACTCAACACAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044494 ENSRNOT00000069761 1 1 1 60 17 61415743 61415761 ATCTCGGAAGTGAAGCAGG 60 61415701 61415719 TGTGGCCTTAGGAAGACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059272.1 ENSRNOG00000049486 ENSRNOT00000075112 3 1 1 62 4 13255447 13255465 TCCTCCTCTTCCTCTTCCA 59 13255488 13255509 GCATGAAATAGAACACAAGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058220 ENSRNOT00000091546 3 1 1 60 4 21904768 21904792 ACAGTAAAGAGATTAGGATAGTCCC 59 21904808 21904828 GGAATGCTTCATGAGTTTGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000054642 ENSRNOT00000078054 1 1 1 60 17 81859302 81859326 GAATCAATCTATGGAGCTATATGGG 59 81859343 81859362 CACTTCCTAGGGTCCATGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010705.1 ENSRNOG00000032715 ENSRNOT00000046641 1 1 1 60 2 148262915 148262933 GCCACTCAAGAAACGAACC 60 148262956 148262975 GGCAATTCCCACACTTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065532.1 ENSRNOG00000041530 ENSRNOT00000063283 2 1 1 63 6 133861040 133861059 TATTTGAAGGTGCGGTTGAC 59 133861083 133861103 GTAGACCATGTGTCCTATGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055906 ENSRNOT00000091802 3 1 1 60 4 93981215 93981236 GCCATCTACAGGTATAGAAGGT 59 93981176 93981194 ATCTGCCACCTAATGACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061717 ENSRNOT00000090020 1 1 1 60 7 23826039 23826062 GGAACACTACAGATATTAGCATGG 59 23826080 23826099 ATGCTTCACAAATTTGGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028336.1 ENSRNOG00000057298 ENSRNOT00000077094 3 1 1 60 17 65937660 65937681 AGTACACCATAGCTGTCTTCAG 60 65937621 65937640 GACTTCTGTAATGGGATCCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058014 ENSRNOT00000089239 1 1 1 60 4 158424248 158424269 CTCAAATTGGAATGACACAGAG 58 158424290 158424308 ATCTGCGTGTCATCTTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012133.1 ENSRNOG00000047188 ENSRNOT00000073126 3 1 1 60 2 186932823 186932845 GGAATGAAGAAATTGTCCTCCAG 60 186932785 186932804 CCATGGGTAGCAATCAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041728 ENSRNOT00000063481 3 1 1 60 7 15055543 15055565 CTGAATGTACCCAATCTCATCTG 59 15055505 15055524 CTCCAAGTACTAACCAGGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000028767 ENSRNOT00000033187 1 1 1 80 1 62191036 62191224 TACAGCATCCACATAGGAGAG 59 62190976 62190996 GACTGTCAGATGGTATTTCCG 59 Novel Rattus norvegicus 81 AABR07013583.1 ENSRNOG00000051598 ENSRNOT00000072902 1 1 1 80 2 244930751 244930776 GACTCAACTGTCAAAGATGGA 58 244930691 244930711 TGATCTTCTCATTGAGTCCTG 57 Novel Rattus norvegicus 81 Mrps6 ENSRNOG00000059381 ENSRNOT00000087452 2 1 1 89 11 32253015 32263520 CGAGGAGGGTATTTCTTGGT 59 32263572 32263590 AACCACATCAGTGTCTCGT 59 Novel Rattus norvegicus 81 AABR07033579.1 ENSRNOG00000058863 ENSRNOT00000081347 2 1 1 106 11 28810813 28810831 GGATTCGAATCACGCTCAC 59 28810549 28810745 CTTCAACCTCCACTCTTTCAG 59 Novel Rattus norvegicus 81 Rn60_20_0464.2 ENSRNOG00000051272 ENSRNOT00000076566 1 1 3 68 20 44606481 44606499 CTACTGCTGTTAGTGCCAC 58 44602980 44602998 CTGTCAGGACCTGGAACTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07066818.1 ENSRNOG00000049643 ENSRNOT00000074015 3 1 1 66 9 17175048 17175066 TTTCTCTGTGTAGCCCTGG 59 17175000 17175018 TCTCTGAGTTCAAAGCCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000048227 ENSRNOT00000074722 2 1 1 60 12 25290825 25290844 CCATACCATACTGGACATGC 58 25290866 25290885 CCATCCAAGTACTAACCAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051731.1 ENSRNOG00000053899 ENSRNOT00000088492 2 1 1 81 3 20375740 20375891 GCTTACAGGTGGTAAATGTGAC 60 20375929 20375951 GATGGTGACAATTTCTTCCAGAG 60 Novel Rattus norvegicus 81 AABR07062694.1 ENSRNOG00000052732 ENSRNOT00000089136 2 1 1 80 6 3416574 3416597 GAGATTTCACCTCACATGCG 59 3416639 3416658 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 AABR07012843.1 ENSRNOG00000056341 ENSRNOT00000090714 1 1 1 67 2 210338336 210338354 GTCGGATTACAGCATTGGG 59 210338282 210338300 CAGTGCCTACATCCTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000055105 ENSRNOT00000087996 2 1 1 67 10 74742649 74742667 CTTATCCATTGCACTCCGG 58 74742698 74742716 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067387.1 ENSRNOG00000058101 ENSRNOT00000087372 1 1 1 60 9 41995381 41995402 ACACATACATAACCACAGACAC 59 41995342 41995363 GATGTGTCTGTATGTGTATGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA41 ENSRNOG00000058213 ENSRNOT00000079343 3 1 1 60 8 49369000 49369018 GTAGCATTCCTCTGTGGGA 59 49368958 49368976 ATGTGGCTAAGAAAGAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024725.1 ENSRNOG00000051457 ENSRNOT00000077513 2 1 1 80 16 12741159 12741178 CCTTTCTGTCCACATACCGA 60 12737053 12741119 CTGTGAAGTGTGAATACCTCAG 59 Novel Rattus norvegicus 81 AABR07024725.1 ENSRNOG00000051457 ENSRNOT00000077513 3 1 1 80 16 12741160 12741178 CCTTTCTGTCCACATACCG 58 12737053 12741119 CTGTGAAGTGTGAATACCTCAG 59 Novel Rattus norvegicus 81 ENSRNOG00000061764 ENSRNOT00000082700 3 1 1 80 13 92669731 92669751 CGGAGTAGGAATACCTTCCC 59 92669793 92669812 CACATTCCAAGGGAGAAGGA 60 Novel Rattus norvegicus 81 AABR07042457.1 ENSRNOG00000052590 ENSRNOT00000090769 1 1 1 73 X 157458859 157458878 ATTCTTCTTGCAAGGGAGG 57 157458804 157458827 GTAAAGGGATGGATCTCTATAGAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07058406.1 ENSRNOG00000059955 ENSRNOT00000078097 1 1 1 60 7 114690413 114690433 CAAGTTCATCAAGAGGATGGT 58 114690373 114690391 CAGCTCCTCCCACTTTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067355.1 ENSRNOG00000057235 ENSRNOT00000086189 2 1 1 60 9 41208191 41208212 TGAAAGCAAGGGTAATTGACTC 59 41208233 41208251 TGGACGTCTAGAACCACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042388.1 ENSRNOG00000052411 ENSRNOT00000085391 1 1 1 85 X 154739308 154739328 AGAGGAAGATAGACTGGAGTG 58 154739372 154739397 TCTGTCAACAACATTCCTTCTC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055366 ENSRNOT00000080513 1 1 1 60 1 177432149 177432167 CTTCTGGTGTCACATGTGC 59 177432107 177432125 ACCGAGCATGGACATAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038219.1 ENSRNOG00000052118 ENSRNOT00000084562 3 1 1 60 X 43293886 43293905 GAGTATGGGAAGAGTACGGA 58 43293928 43293946 CAGAATCCCTGAAAGGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040282.1 ENSRNOG00000061407 ENSRNOT00000089023 1 1 1 60 X 96822559 96822578 GTGGTGTCCAAACTGTACTC 59 96822518 96822536 CTGTCTCTGATCCACTGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071935.2 ENSRNOG00000061441 ENSRNOT00000087364 2 1 1 60 X 157200724 157200743 CCACCATCAACAAGAATGCT 59 157200683 157200702 TTCTTTCGGATCATCTGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053199 ENSRNOT00000090613 1 1 1 60 3 39643933 39643954 ATACAGAGAAGATTAGCATGGC 58 39643894 39643914 GGAACACTTCACGAATTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056556.1 ENSRNOG00000032424 ENSRNOT00000049362 2 1 1 60 7 29909265 29909283 AGGCTTCCTCCTTTCACAG 59 29909307 29909325 CATGTGACGTTACCACCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037436.1 ENSRNOG00000052565 ENSRNOT00000083810 1 1 1 60 X 20734081 20734100 CAGTTTCTCAGTCATCCTCC 58 20734040 20734060 TTGAGTGTCAAGTTACTGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044087 ENSRNOT00000069354 1 1 1 60 3 55740493 55740513 GCCATATCATCCTGAACATCC 59 55740535 55740553 CAAGGTTCTCCTGATCCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC125873.2 ENSRNOG00000060487 ENSRNOT00000077559 2 1 1 60 13 109909851 109909869 TTTGCCATGTCACAGTGAC 59 109909892 109909911 GATCCACATGAAACCTGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058998 ENSRNOT00000084716 3 1 1 60 8 1160622 1160640 AATGAGGTTTATCCGAGGC 57 1160580 1160599 ATCACATCATGGTTCCAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030729.1 ENSRNOG00000030224 ENSRNOT00000044922 3 1 1 60 10 102289161 102289179 CAGAGCTGAATGGGAACCT 59 102289119 102289139 ACAGATACATTGGGAGTAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128059.1 ENSRNOG00000049620 ENSRNOT00000071360 1 1 1 61 8 116713529 116713548 CTGGCCTTGAACTCATAGAG 58 116713572 116713590 ACGCCTTTAGTCCTAGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006888.1 ENSRNOG00000051734 ENSRNOT00000082376 2 1 1 82 1 262861667 262861686 CGTCAGTCACTTTACTCCCA 60 262861729 262888062 CCTCTAGTACCTGTTCCTCTG 59 Novel Rattus norvegicus 81 AABR07006888.1 ENSRNOG00000051734 ENSRNOT00000082376 3 1 1 82 1 262861666 262861685 TCGTCAGTCACTTTACTCCC 59 262861727 262888061 CTCTAGTACCTGTTCCTCTGAG 59 Novel Rattus norvegicus 81 AC105804.1 ENSRNOG00000053768 ENSRNOT00000088038 3 1 1 89 12 47277109 47277131 TCATCCCTAATTTGCTACACTG 58 47277182 47277200 CACGTGCAGTTGTAAGCTG 60 Novel DesignRelaxed Rattus norvegicus 81 U6 ENSRNOG00000052041 ENSRNOT00000091302 3 1 1 61 1 94591127 94591149 CAATACAGAGAAGATTGGCATGG 60 94591088 94591106 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053990 ENSRNOT00000087379 1 1 1 60 8 83924694 83924712 GGCTGGTTAGGTGGATCTC 60 83924652 83924670 CATGCAGCTTTAGGAGGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071243.1 ENSRNOG00000046364 ENSRNOT00000071769 2 1 1 98 8 106582011 106582029 CGAACAACATGAGCCTCTG 59 106581930 106581949 TATCACCCAACCAGACACC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052988 ENSRNOT00000092206 2 1 1 60 8 95657769 95657788 AGAGGCTGTGTCTATCTCAG 58 95657728 95657749 TGTTAGGCTACTAATCACTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024682.1 ENSRNOG00000055022 ENSRNOT00000080192 2 1 1 88 16 12123948 12124096 CAGACAAGAGTGAGAATGATTCTG 60 12123883 12123902 TAGCTTAACCACAGCCTCTG 60 Novel Rattus norvegicus 81 AABR07070926.1 ENSRNOG00000054875 ENSRNOT00000080817 3 1 1 81 8 92224992 92225015 TCTACAAATCCAGCACTAAGGA 59 92224932 92224953 AGTTTCTTGCTTCTTCTAGGGT 60 Novel Rattus norvegicus 81 AC097023.1 ENSRNOG00000041504 ENSRNOT00000063257 1 1 1 60 8 85987255 85987273 TAGAAGGCAGACAGATCCC 58 85987213 85987233 CCTGGAATTCCCTCTGTAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD50 ENSRNOG00000058779 ENSRNOT00000079614 3 1 1 66 8 96302132 96302154 ATGATGATCCTATCCCGAATCTG 60 96302088 96302106 ATCTCAGAAGCCAGATCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052126 ENSRNOT00000088994 3 1 1 60 8 83860137 83860158 GTCACATGGACATCAATAGGTG 59 83860098 83860119 GTCAGAATGCTAAGCATAGACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC132752.2 ENSRNOG00000060837 ENSRNOT00000091125 2 1 1 89 20 47733352 47733371 AACTTAGGGATATCGCTGGT 58 47733281 47733302 GGGCAAGAATACCTACATTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044268.1 ENSRNOG00000059122 ENSRNOT00000074691 3 1 1 80 20 628727 628751 TCTGCTATACCACTTCTACCC 59 628793 628811 CTATGCAGCCCACATAGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07024500.1 ENSRNOG00000056629 ENSRNOT00000091719 3 1 1 60 16 2061726 2061747 TACACCTCTAGGATTTGATGAC 57 2061765 2061786 TTCAAACTCTGTGACATCTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053318 ENSRNOT00000083640 2 1 1 60 3 58648379 58648401 GTGTCACATGTACATGTAGATGG 59 58648341 58648359 CAGAGCACTGAGCATAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052559.2 ENSRNOG00000055150 ENSRNOT00000078427 3 1 1 87 3 61672755 61672773 GAGGTAGACCTTCCAAGGC 60 61672685 61672706 GAGACAGCATTAGCCAAACAG 60 Novel Rattus norvegicus 81 AC107446.3 ENSRNOG00000058163 ENSRNOT00000073343 2 1 1 61 3 57697537 57697556 TACAAAGCTTCTGTAAGGCA 57 57697582 57697600 TTCCCAATCTGTTGGTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000061634 ENSRNOT00000079099 3 1 1 60 16 76183757 76183776 TGTGGGTCAGTAGGTAACAG 59 76183798 76183817 CACAGATCAGAACACTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014823.1 ENSRNOG00000051616 ENSRNOT00000082644 2 1 1 67 14 32773505 32773524 TTGCATTTGTATTCTCCGCA 59 32770359 32773475 TCTCTTAACCCATCTGCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07046745.1 ENSRNOG00000052848 ENSRNOT00000083482 2 1 1 68 5 4548337 4549224 GATGTAAGCTGAAGGCCTC 58 4548287 4548305 AGTCGTTGATTGTAGGCAG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07072400.2 ENSRNOG00000061611 ENSRNOT00000089173 1 1 1 80 14 43647779 43647797 GGACATGAACTAGCCACAG 58 43646628 43647738 ATACACAGTACACTCATCTCAG 57 Novel Rattus norvegicus 81 AABR07031419.1 ENSRNOG00000058992 ENSRNOT00000077144 3 1 1 82 18 13276140 13276159 ACACTTTGGACAGCATAGAG 58 13276203 13276345 GAAAGAACCCATGGTCTGAG 58 Novel Rattus norvegicus 81 AABR07015399.1 ENSRNOG00000051674 ENSRNOT00000090450 2 1 1 80 14 53798630 53798651 GCTCAGTACATCTTTACTACCA 57 53798692 53806679 ATCACTCTACCTTCCTGGG 58 Novel Rattus norvegicus 81 AABR07029639.1 ENSRNOG00000058124 ENSRNOT00000086993 2 1 1 80 10 42312759 42312779 CCTCACAGAGAATTCACATCC 59 42312819 42312990 CCTTCAAAGTGAACTGTTCCT 59 Novel Rattus norvegicus 81 AABR07000411.1 ENSRNOG00000055789 ENSRNOT00000087070 1 1 1 80 1 12006794 12086536 GCTTCATCAGCTGGAATGAC 59 12086579 12086597 GTTGGCTCATGATCTCAGC 59 Novel Rattus norvegicus 81 AABR07015522.1 ENSRNOG00000055850 ENSRNOT00000086889,ENSRNOT00000087589 2 2 2 80 14 61651301 61660208 CATTCTTAAGTATATGACTGACGGG 59 61660244 61660264 ATTATCACACCATAACGCTCC 58 Novel Rattus norvegicus 81 AABR07015522.1 ENSRNOG00000055850 ENSRNOT00000086889,ENSRNOT00000087589 3 2 2 80 14 61651244 61651262 GTTAGGCCAGGAAGTTGGA 59 61651300 61660207 CCGTCAGTCATATACTTAAGAATGG 59 Novel Rattus norvegicus 81 AABR07047194.1 ENSRNOG00000058576 ENSRNOT00000081862 2 1 1 80 5 23391927 23391946 GTCGAAACAGTCTGTTGCAG 60 23391989 23392610 TGACCAGACGTCTTTGACC 60 Novel Rattus norvegicus 81 AABR07015647.2 ENSRNOG00000061727 ENSRNOT00000078124 3 1 1 89 14 68659614 68662053 GAAACACCAGGAAGGACAG 58 68659543 68659561 TTGTAAACTGCCAGGAAGC 58 Novel Rattus norvegicus 81 AABR07015761.1 ENSRNOG00000060498 ENSRNOT00000078461 3 1 1 80 14 74325472 74329469 TGCTGAGAAACAGAGAAGAGG 60 74329509 74329529 ATCAGTGCTGTGACTATGAGG 60 Novel Rattus norvegicus 81 AABR07030257.1 ENSRNOG00000052162 ENSRNOT00000077728 1 1 1 85 10 78220602 78223572 GGACTACTCTGCTGGATGG 59 78223621 78223639 TCACAGGGCTACAGAAGTC 59 Novel Rattus norvegicus 81 AC136053.1 ENSRNOG00000057719 ENSRNOT00000081461 1 1 1 80 1 15247463 15247485 GTCTTTGGACCTCTCATTATCAG 59 15247525 15255751 CAGCAACAACCTGAAACCA 59 Novel Rattus norvegicus 81 AABR07000523.1 ENSRNOG00000053617 ENSRNOT00000081799 3 1 1 60 1 16462967 16462988 CATGATCCTTCCTTACTTCCTC 58 16463008 16463027 AGCCCTTAGACATCACACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030276.1 ENSRNOG00000051945 ENSRNOT00000086543 1 1 1 60 10 79210687 79210705 TCAACTTTGACGTTTGCCA 59 79208817 79210663 ATAGCGACAGTGCTCTACG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07000533.1 ENSRNOG00000052464 ENSRNOT00000084087 2 1 1 80 1 16965440 16965458 AGCAACCCTTCTAATGTGG 57 16961071 16965396 GAATACCAGGACCTGTCAC 57 Novel Rattus norvegicus 81 AABR07048075.2 ENSRNOG00000053369 ENSRNOT00000085035 1 1 1 107 5 60521828 60521846 GGCTTCTGAAGCTGTACCT 59 60524217 60524235 GTTTCCTCTACCTTCCCGG 60 Novel DesignNoJunction Rattus norvegicus 81 AC095078.3 ENSRNOG00000061792 ENSRNOT00000080749 3 1 1 66 4 117552448 117552466 CTGGACTCCTGTCAAGGAC 59 117550953 117550971 AAACCGGAGGACAGTTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07048199.1 ENSRNOG00000057026 ENSRNOT00000089749 3 1 1 80 5 66945034 66945052 CATTCAGGCTCACTACCAG 58 66943706 66944993 TATCATTCTAAACCACCCTTCC 58 Novel Rattus norvegicus 81 AC095078.2 ENSRNOG00000058506 ENSRNOT00000084174 2 1 2 80 4 117655198 117663063 CGTTGAAGACCTGAATCCA 58 117655136 117655156 AAAGGATGATTCCAGAATCCG 58 Novel Rattus norvegicus 81 AABR07000611.1 ENSRNOG00000051380 ENSRNOT00000085289,ENSRNOT00000081174,ENSRNOT00000088342 1 3 3 80 1 19639619 19639638 AGTGAAGTCCCAGATGACTC 59 19639394 19639576 GCCTACTGGAGTGTACCTC 59 Novel Rattus norvegicus 81 AABR07048342.1 ENSRNOG00000051572 ENSRNOT00000083131 3 1 1 93 5 73803845 73805013 TAGAACTCTGGCAGGAAAGC 60 73803771 73803790 ATCTAGGGAAGAGCTCACCT 60 Novel Rattus norvegicus 81 AABR07016572.1 ENSRNOG00000061005 ENSRNOT00000091905 2 1 1 87 14 104709195 104709214 GACACTTGGTGTCACAAACC 60 104709264 104714090 ATCATCACAGGACCTGCAC 60 Novel Rattus norvegicus 81 AABR07016578.2 ENSRNOG00000056722 ENSRNOT00000079867 2 1 1 85 14 105084285 105084810 AACTCTGCTCTGAAGACCC 59 105084857 105084877 CAAATCAGTCGTGAGATTCCA 59 Novel Rattus norvegicus 81 AABR07061541.1 ENSRNOG00000059365 ENSRNOT00000085264 3 1 1 61 4 132914655 132918151 TTCTCACTCAGGCTTCTGG 59 132918176 132918194 CTGTGATCTCATGTTGCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07016589.1 ENSRNOG00000052148 ENSRNOT00000083675 2 1 1 86 14 105480738 105480758 AGCCAACAGAACTTAAAGGTG 59 105480803 105484644 GGCAAATTCAAGAACCTTATGC 59 Novel Rattus norvegicus 81 AABR07048900.1 ENSRNOG00000061469 ENSRNOT00000078686 1 1 1 103 5 96379013 96379031 TCCTACTGAAGCTGCAGAG 59 96393167 96393186 TTGTTCATTCAGTTGACCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07048939.1 ENSRNOG00000056861 ENSRNOT00000089682 3 1 1 85 5 98102229 98102247 GTGAAATGCCTGGAAACCG 60 98114132 98114150 CATCATGATTCCAAGCCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030568.1 ENSRNOG00000051841 ENSRNOT00000082370 1 1 1 80 10 93242356 93242374 CTCCTTGTCAAATGCAGCC 60 93251184 93251204 CCTACGGTTTCCAGATATGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07000978.1 ENSRNOG00000056484 ENSRNOT00000083664 1 1 1 60 1 30666711 30666734 GGATTCTATTTCTACACAGTCCAC 59 30666188 30666695 TAACCATTCACTTAGTCAAGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07061807.1 ENSRNOG00000052299 ENSRNOT00000080698 2 1 1 62 4 146294992 146296369 ACCCATGAAGGAAGGACTG 59 146294948 146294966 TGACTGAATTCAGCAAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030642.1 ENSRNOG00000054591 ENSRNOT00000079534 3 1 1 81 10 97347949 97349585 AGAAGAGATGGAAGGCTGG 59 97349627 97349648 TTTCCACTGTCATCTACATCCA 59 Novel Rattus norvegicus 81 AABR07001006.1 ENSRNOG00000060323 ENSRNOT00000085639 1 1 1 82 1 32661258 32661276 CCACAGCAGCTCTACAGAG 60 32661322 32662150 ATGTTCCAGGAAACCTGCA 60 Novel Rattus norvegicus 81 AABR07030690.2 ENSRNOG00000061583 ENSRNOT00000086379 1 1 2 81 10 99706395 99706413 ATCTGTGAACACAAGGCCT 59 99691230 99706352 TGGAAATACCTTGCAGATGTG 59 Novel Rattus norvegicus 81 AABR07049156.1 ENSRNOG00000051401 ENSRNOT00000079787 1 1 1 60 5 107945180 107945200 CTCACTTTCTCTGTCCCTCTC 60 107945217 107945240 ATACAGTCTTCTATGTGTAGTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115420.3 ENSRNOG00000056433 ENSRNOT00000074731 3 1 1 80 4 157457990 157458008 AGGCTTTCTCAAACTCGTC 58 157458052 157460157 ACAAGTTACTGCCTTCTCC 57 Novel Rattus norvegicus 81 AABR07016947.1 ENSRNOG00000053368 ENSRNOT00000090163 1 1 1 80 15 5372444 5372464 ATAAACACAGTTCCTGGACAC 58 5367274 5372403 TCCGAATAAACCCTAAGCAG 57 Novel Rattus norvegicus 81 AABR07001018.4 ENSRNOG00000056842 ENSRNOT00000079972 1 1 1 82 1 33805037 33810665 GAGAAGTGTGAAGGTAAGACAC 59 33810708 33810726 TCCTTCATGGGACCATCTG 59 Novel Rattus norvegicus 81 AABR07049353.2 ENSRNOG00000059390 ENSRNOT00000085331 2 1 1 80 5 118187843 118187862 AGGAACCAAGGATCAGACTC 59 118187903 118212943 ATTTGATGCTCATCTGGACTG 59 Novel Rattus norvegicus 81 AABR07017113.1 ENSRNOG00000053511 ENSRNOT00000090127 2 1 1 74 15 11913327 11913345 CTGCCTCTGCAAGTTTCTC 59 11939495 11939513 AATTCTGTGATCTTCGGCA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07017159.2 ENSRNOG00000061047 ENSRNOT00000082478 1 1 1 80 15 13968376 13971819 AACACTGCTAATGGAGACAC 58 13971862 13971880 CCTGTTTCTGAGGGAAGTC 58 Novel Rattus norvegicus 81 AABR07062069.1 ENSRNOG00000059103 ENSRNOT00000077879 1 1 1 75 4 160419541 160419559 ATTCTGCAGGGATAGCCTG 59 160421875 160421893 AGATGACCTCACTGTCACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030793.1 ENSRNOG00000059335 ENSRNOT00000081753 2 1 1 60 10 104841905 104841923 GCTCTGCTCTTCCTCTTCC 60 104839173 104839196 CTGGTCCTATGAGTAAATCTTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049503.1 ENSRNOG00000059476 ENSRNOT00000087040 2 1 1 80 5 124772451 124772470 AGCTGACTGGAAACTAACAC 58 124771038 124772410 AAATGCTACAGTCATCTCACC 58 Novel Rattus norvegicus 81 AABR07030854.2 ENSRNOG00000051943 ENSRNOT00000082347 1 1 1 84 10 106573962 106573980 AAAGATGGGAGGTAGGGTC 58 106570847 106573914 AAGATCATGCCATTCCTGG 58 Novel Rattus norvegicus 81 AABR07062157.1 ENSRNOG00000057273 ENSRNOT00000079638 2 1 1 63 4 162999666 162999684 GAACAGCTGTACAGAAGCC 59 162999710 163008805 TCTTTGTTTGTCCGTTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030890.1 ENSRNOG00000053005 ENSRNOT00000078183 1 1 1 84 10 107999834 108000073 GAAGTAGCTCCAGCTGGAC 60 108000121 108000139 CTGCTGACAAACTGTCCAC 59 Novel Rattus norvegicus 81 AABR07062181.2 ENSRNOG00000060668 ENSRNOT00000078976 2 1 1 84 4 163915680 163920548 GCTTCAGAGGACTTAGCCT 59 163915614 163915636 CTATGCCATATCAGATTCCAGAG 58 Novel Rattus norvegicus 81 AABR07030894.1 ENSRNOG00000054934 ENSRNOT00000088954 3 1 1 80 10 108051943 108053063 CTCTCAATCTGGCAAACCTC 59 108051882 108051900 GAGGCATTTGTTCCTGCTG 60 Novel Rattus norvegicus 81 AABR07062298.2 ENSRNOG00000052108 ENSRNOT00000083020 3 1 1 80 4 167558406 167558428 TGGTAATACCTACTCAAGCTTCC 60 167558465 167560780 TCTTATCTAGTAAGTGACCGCC 59 Novel Rattus norvegicus 81 AABR07033234.1 ENSRNOG00000058526 ENSRNOT00000081228 1 1 1 60 11 11653077 11653095 AGGCTGCTGGATTCTACTG 59 11641731 11653053 TATGATTGGCTCGGTAGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07031590.1 ENSRNOG00000059828 ENSRNOT00000089678 2 1 1 118 18 21163972 21167137 CAATGTGTCACCAGGAGTG 59 21167216 21167237 CGTTGACATAAATGTTGACAGC 59 Novel Rattus norvegicus 81 AABR07001493.1 ENSRNOG00000058258 ENSRNOT00000090336,ENSRNOT00000080468 2 2 3 80 1 47513321 47513706 GTCCACGTTCAGAAGAAGGA 60 47513748 47513767 GCTGTCTGCTCCATTAACAG 59 Novel Rattus norvegicus 81 AABR07017872.1 ENSRNOG00000053204 ENSRNOT00000081388 1 1 1 80 15 32099127 32106375 ATACATTATTTCCTGGGAGGTG 58 32106415 32106434 GGAGTCTCCTTCAAAGACAG 58 Novel Rattus norvegicus 81 AABR07031740.1 ENSRNOG00000057082 ENSRNOT00000089581 2 1 1 71 18 31305842 31305860 AAGTCTGAAGAGACCGCAG 59 31296204 31296222 TGGTCTTCTGTTCCCTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AC097037.3 ENSRNOG00000052966 ENSRNOT00000087313 3 1 1 80 15 32975253 32975683 TTGGAATTTCCTCACTCCTG 58 32975192 32975210 GATACAAGGGAGAACGCAG 58 Novel Rattus norvegicus 81 AABR07049962.1 ENSRNOG00000057617 ENSRNOT00000079472 3 1 1 69 5 146346336 146346354 TAGAAGAACCAGGTGCCAG 59 146348782 146348800 GTCTTCTCCGACAATGACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07018100.1 ENSRNOG00000052751 ENSRNOT00000085733 3 1 1 88 15 39587381 39587953 AAATGTTGGCAGACTGGTG 59 39588005 39588023 ACCTATGTCTGCAGTGGTC 59 Novel Rattus norvegicus 81 AABR07018119.1 ENSRNOG00000053233 ENSRNOT00000088052 2 1 1 80 15 40797291 40797932 GCATTCCTGGTTTGCATCC 60 40797973 40797994 TTTCAAACATGCAGGATAGACG 59 Novel Rattus norvegicus 81 AABR07032155.1 ENSRNOG00000061729 ENSRNOT00000083343 3 1 1 61 18 50094030 50133445 GTATCCAGAGTCACTCAGAGG 59 50093989 50094009 GCCAGATCTGTCAAAGAAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032162.1 ENSRNOG00000061355 ENSRNOT00000084357 1 1 2 80 18 50434571 50435147 TTTGCCTAATGCTCCTCCA 59 50434509 50434528 AGTGGAGTCTCAGGAATGTC 59 Novel Rattus norvegicus 81 AC097890.2 ENSRNOG00000052423 ENSRNOT00000082396 3 1 1 87 18 51367626 51368737 CCTATACTGCCAGAGTGCT 59 51367557 51367575 CATAGGACAAATGCCAGCA 58 Novel Rattus norvegicus 81 AABR07063581.1 ENSRNOG00000058114 ENSRNOT00000084534 2 1 1 80 6 36081903 36081921 AGGAGAAGCCTCTCATGTG 59 36079037 36081862 AGGCTCTATCCTCTAAATCAGC 59 Novel Rattus norvegicus 81 AABR07072602.1 ENSRNOG00000052190 ENSRNOT00000087290 3 1 1 81 18 53252758 53263258 TGGACAACCTGTCTGTGAG 59 53252695 53252716 GAATCCATAAACACAAGCACAG 58 Novel Rattus norvegicus 81 AABR07050283.2 ENSRNOG00000061263 ENSRNOT00000082432 2 1 1 61 5 159213622 159213640 CTTCCTTGGTCCTGGTACC 59 159213956 159213975 TTTGATTCGTCGTGGATGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07050321.1 ENSRNOG00000057262 ENSRNOT00000087457 2 1 1 84 5 161085467 161087498 CAGAACAGATGCGTCTTTCC 59 161085402 161085423 AAGTCTGAACTCAGGAATTGAC 58 Novel Rattus norvegicus 81 AABR07063649.3 ENSRNOG00000058529 ENSRNOT00000083922 1 1 1 80 6 39504689 39504707 ACTGAAGCAACTGACCCTC 60 39504750 39515327 TTGCTGATAAGCTTGTGGTG 59 Novel Rattus norvegicus 81 AABR07063649.1 ENSRNOG00000051916 ENSRNOT00000081334 1 1 1 60 6 39679927 39679948 ACTATCCAGCATCTAGAAGAGC 59 39679969 39692702 AATGGCATGCAGTTCAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002066.1 ENSRNOG00000051968 ENSRNOT00000079821 2 1 1 92 1 65652793 65652811 GGTTGGTCTCTGGAATTGG 58 65651461 65652740 GGCAGTTCTCACATCTTTAGAG 59 Novel Rattus norvegicus 81 AABR07050482.1 ENSRNOG00000053174 ENSRNOT00000082039 2 1 1 88 5 166799796 166803241 CACGAAGAGATCCATGCCA 60 166803293 166803311 AAATTCTCGGAGGTGCCTC 60 Novel Rattus norvegicus 81 AABR07002493.1 ENSRNOG00000061661 ENSRNOT00000082654 2 1 1 105 1 75636385 75645099 GAGTCCATTTGGCTTGGAG 59 75645168 75645186 CAAATGGAAGACGTCCGAC 59 Novel Rattus norvegicus 81 AABR07032407.1 ENSRNOG00000059960 ENSRNOT00000089391 1 1 1 70 18 64303982 64304000 AAAGAAACAGCTACCGGTG 58 64304034 64309479 CTCCATAAAGGTCAGGGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07051250.2 ENSRNOG00000061542 ENSRNOT00000090507 2 1 1 87 3 3492161 3492179 TTGAGACAGACCACAGCAG 60 3489162 3489180 ATTCTTCTGAGCTCCAGGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07002805.1 ENSRNOG00000056831 ENSRNOT00000078361 1 1 1 110 1 85574476 85574494 AAGTCCATCTGTCCTACCC 58 85567970 85567988 GAAGAGGACCAGACAGCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07063852.1 ENSRNOG00000052265 ENSRNOT00000082698 2 1 1 96 6 52713261 52713284 GAGAAGCTGTATATGTACATCAGG 59 52712885 52712905 TCTTTACTGTTGAGCCCTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07019085.1 ENSRNOG00000059113 ENSRNOT00000081466 2 1 1 80 15 87409154 87411958 CATTGAAATAGATGCTGGCCT 59 87409094 87409112 TTGACGAGCTGAGTTCCTG 60 Novel Rattus norvegicus 81 AC111292.1 ENSRNOG00000052912 ENSRNOT00000091786 2 1 1 80 3 3955902 3956355 ACCAGGACTGAATGCTGAG 59 3956399 3956417 CCTGATTGGACTCAGGACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07032563.2 ENSRNOG00000058559 ENSRNOT00000079123 2 1 1 60 18 71990621 72001708 GATCCATTCTCTACCTCGGG 59 72001731 72001749 TTCTGCTTGCAATTCAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063873.1 ENSRNOG00000058832 ENSRNOT00000082019 2 1 1 80 6 53276019 53276039 TCACTCACTACTGTATGGCAC 60 53271916 53275980 TTTCGAGAATCATCACCTAGGA 59 Novel Rattus norvegicus 81 AABR07051255.1 ENSRNOG00000058226 ENSRNOT00000088512 2 1 1 81 3 4153825 4154297 CTAATGTGGATTGCAGGACG 59 4154341 4154359 CACAGGCTGTGTATTTGGC 60 Novel Rattus norvegicus 81 AABR07032593.1 ENSRNOG00000052987 ENSRNOT00000079714 2 1 1 60 18 72921511 72921532 TCAACTGGGCTCATCTTATCTC 60 72920729 72920747 AGCCTTGCAGTACACTGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07019099.1 ENSRNOG00000057030 ENSRNOT00000080719 2 1 1 82 15 89029786 89030240 ACATTTGGGTTTGGGACAG 58 89029722 89029744 GGAGAAAGTCTGAGTAGATTCTC 58 Novel Rattus norvegicus 81 AC114093.2 ENSRNOG00000054926 ENSRNOT00000079653 3 1 1 129 18 74862368 74862386 TTTCACCGTCATTGTTGCA 59 74862478 74863543 CTTCTCCTAACTTGCTGGTC 58 Novel Rattus norvegicus 81 AABR07032640.1 ENSRNOG00000061277 ENSRNOT00000090840 1 1 1 80 18 75549013 75549813 CCTTCAAGACAGGTCTTCC 58 75549854 75549875 GATGCCTGTCCTCTTATTACTG 59 Novel Rattus norvegicus 81 AABR07051326.1 ENSRNOG00000055302 ENSRNOT00000088366 1 1 1 80 3 4943557 4943578 AGGATATGGGATGTGAAGACAG 60 4943617 4947082 ATTGAAATGAACGGCTGAGAC 59 Novel Rattus norvegicus 81 AABR07002902.1 ENSRNOG00000056429 ENSRNOT00000081905 3 1 1 87 1 88632221 88634886 CTACAGAGACCGAAGGACTC 59 88634936 88634954 CCTACCTGAAGGACCATGG 59 Novel Rattus norvegicus 81 AABR07002928.1 ENSRNOG00000061315 ENSRNOT00000092226 1 1 2 108 1 89650121 89675244 GCCTTCCTCTTATTAGGCCT 59 89675315 89675333 CACTTCCTGGTACAGGGTC 59 Novel Rattus norvegicus 81 AABR07002928.1 ENSRNOG00000061315 ENSRNOT00000092226 3 1 2 110 1 89650121 89675244 GCCTTCCTCTTATTAGGCCT 59 89675317 89675335 ATCACTTCCTGGTACAGGG 58 Novel Rattus norvegicus 81 AABR07032750.1 ENSRNOG00000059809 ENSRNOT00000088259 3 1 1 61 18 79660394 79660412 ACACGTCATGGACTCAGTG 60 79660437 79672153 CCCGTAGATGATGACCCTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07051511.1 ENSRNOG00000054597 ENSRNOT00000080055 2 1 1 87 3 14433554 14433572 GCCGATTCATTCGCAAGAG 60 14433623 14434666 TTTCATTGGCTGAAGTCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051515.1 ENSRNOG00000058364 ENSRNOT00000080459 2 1 1 80 3 14660156 14700281 CAGATCAGGAGTTGGAGCC 60 14660094 14660112 CCGAGTTCTATGGAGCTCC 59 Novel Rattus norvegicus 81 AABR07019435.1 ENSRNOG00000055868 ENSRNOT00000080782 1 1 1 80 15 105341802 105349729 AAATGACCAGTTCATTCCACC 59 105341742 105341760 GCCATTCCATTCCAGACTG 59 Novel Rattus norvegicus 81 AABR07019437.2 ENSRNOG00000052178 ENSRNOT00000091356 3 1 1 82 15 105406984 105407002 TCATAGGTGGACACAACCA 58 105407046 105407559 TCAGTCATTCATTAAGTCGGC 59 Novel Rattus norvegicus 81 AABR07064727.1 ENSRNOG00000060584 ENSRNOT00000080093 1 1 1 80 6 91803708 91803726 CCCATTGGCTGGTTAACAC 59 91803767 91803911 CTCTGGTAGATTTAAACCCTGG 58 Novel Rattus norvegicus 81 AABR07051642.1 ENSRNOG00000057526 ENSRNOT00000084373 3 1 1 80 3 18601830 18601974 GATTACAGATGCCATACGTGAC 59 18602015 18602033 ATGGTGACAGTTTCTCCCA 59 Novel Rattus norvegicus 81 AABR07003049.2 ENSRNOG00000053564 ENSRNOT00000080393 1 1 1 84 1 95060868 95061351 GCTCTGTGGGTCATTTGAG 59 95061396 95061417 CTACAGATATTTCTTGCAGGCT 58 Novel Rattus norvegicus 81 AABR07051787.1 ENSRNOG00000059243 ENSRNOT00000084727 2 1 1 80 3 21379337 21379356 CCCATCTGGATGAAGAGGAG 59 21375979 21379296 ACTCCTTCAGAGTCATCTTCC 59 Novel Rattus norvegicus 81 AABR07020696.1 ENSRNOG00000056686 ENSRNOT00000081626 1 1 1 82 13 35886853 35887288 AAGACATCACCAGCAGGTC 60 35886789 35886807 CTTTCCATTCTGCACGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07073245.1 ENSRNOG00000053035 ENSRNOT00000077192 3 1 1 82 6 108930425 108930446 GAGAAATAGGAAGCAAACTGTC 58 108930489 108931461 CTTCCTTCTTCCTCCAGTG 57 Novel Rattus norvegicus 81 AABR07020952.1 ENSRNOG00000058523 ENSRNOT00000085706 1 1 1 85 13 48379053 48379071 AAGGGTGTTCTAACCAACG 58 48379120 48380763 TGCATGTCACAGAACTGAG 58 Novel Rattus norvegicus 81 AABR07065124.1 ENSRNOG00000055422 ENSRNOT00000083960 1 1 1 80 6 110891034 110891968 AAGAGGAGTGCACTGATCC 59 110892011 110892030 ATCCATCCCTTGTGTCATCC 60 Novel Rattus norvegicus 81 AABR07052048.2 ENSRNOG00000057007 ENSRNOT00000083663 3 1 1 122 3 33946882 33949984 GATGCTCAAGAGTCCCAGG 60 33946778 33946798 CTTATATGAGCAGTCTCGGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07052263.1 ENSRNOG00000055184 ENSRNOT00000077232 3 1 1 60 3 43694967 43694986 GTAGAGCTAACAGGGACCAC 60 43695006 43695027 GACTTCTGTATTGTCAGCTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033829.1 ENSRNOG00000054085 ENSRNOT00000083175 1 1 1 65 11 39618473 39618491 CTGAGCATTGCCTTCTGAG 59 39618520 39648201 CTCTCACTCATGTTGGCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07033829.1 ENSRNOG00000054085 ENSRNOT00000083175 3 1 1 76 11 39618520 39648201 AGGCCAACATGAGTGAGAG 59 39648235 39648259 CATCTTACCATTATCTCCTGATGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065281.1 ENSRNOG00000054309 ENSRNOT00000091058,ENSRNOT00000086587 3 2 2 81 6 119137202 119138985 TCCAATTTAAGGCATGCGTG 60 119139029 119139047 AATAACTTACGCAGGCGGT 60 Novel Rattus norvegicus 81 AABR07033851.2 ENSRNOG00000060551 ENSRNOT00000089542 2 1 1 83 11 40534285 40557202 GAACATTCAACTGAGGTTCGA 59 40534222 40534240 CTGTGGCACTTTCACTCTC 59 Novel Rattus norvegicus 81 AABR07066020.1 ENSRNOG00000060878 ENSRNOT00000085492,ENSRNOT00000086332 2 2 2 86 9 604681 605042 GTACTTGCTCTCCTGGACC 60 604613 604631 CTTGCCATAGATGCGATGC 60 Novel Rattus norvegicus 81 AABR07021391.1 ENSRNOG00000059183 ENSRNOT00000085088 1 1 1 83 13 69563802 69563820 GGAAGTACCTGCTGAAGGG 60 69563867 69564187 ACTGGATACGTGAACCCTG 59 Novel Rattus norvegicus 81 AABR07021391.1 ENSRNOG00000059183 ENSRNOT00000085088 3 1 1 85 13 69563800 69563819 TAGGAAGTACCTGCTGAAGG 59 69563867 69564187 ACTGGATACGTGAACCCTG 59 Novel Rattus norvegicus 81 AABR07052523.2 ENSRNOG00000060690 ENSRNOT00000086643 1 1 1 80 3 59393778 59393796 ATGAATGGACATGGTGCAG 58 59389455 59393736 CATGGCTGTTAATTTACGCTG 58 Novel Rattus norvegicus 81 AABR07003786.1 ENSRNOG00000051576 ENSRNOT00000092146 1 1 1 88 1 118322697 118324430 GGCAATTAATCTACCGTGGT 58 118322628 118322646 ATAGTTCAGTCGTAGGGCA 58 Novel Rattus norvegicus 81 AABR07034293.2 ENSRNOG00000052632 ENSRNOT00000089170 2 1 1 82 11 62943410 62949855 GGGTAGACAAGAAAGGTGC 58 62943346 62943365 TGAACCTTTCTTGTCTACCC 57 Novel Rattus norvegicus 81 AABR07052573.1 ENSRNOG00000057884 ENSRNOT00000092210 1 1 1 66 3 62621911 62622707 TTCTTCATGAGACGGCTGG 60 62621863 62621883 CTCTATTCCGGTTCTGAACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052598.1 ENSRNOG00000055544 ENSRNOT00000081155 1 1 1 80 3 65028840 65028860 CGTAATGAATCGGTTGAATGC 58 65027329 65028798 AGACGGTCTCTTGTACTGG 59 Novel Rattus norvegicus 81 AABR07004130.1 ENSRNOG00000053064 ENSRNOT00000085207 1 1 1 80 1 126387457 126403289 AGGAAGCTGTGGGTAACTC 59 126387395 126387416 TCTTAGAGAAGGTTTCCCTTGG 60 Novel Rattus norvegicus 81 AABR07065486.1 ENSRNOG00000060055 ENSRNOT00000088443 1 1 1 80 6 130796920 130797529 TCTGAGAACTCAACTCCTGC 60 130797569 130797590 CAGCCAATTCTTCAGATAGGTC 59 Novel Rattus norvegicus 81 AABR07021946.1 ENSRNOG00000052859 ENSRNOT00000081827 2 1 2 83 13 100072289 100072307 GAGAGTGAGAGGACTCCCT 59 100072352 100072458 CGAAGAGACCACCTTAAACAC 59 Novel Rattus norvegicus 81 AABR07065600.1 ENSRNOG00000059736 ENSRNOT00000082819 2 1 1 81 6 136898852 136898870 TGGGAATCTTGGCTGACTG 60 136898913 136899494 GCGAATAATGATCTTTGCCCT 59 Novel Rattus norvegicus 81 AABR07022061.1 ENSRNOG00000061342 ENSRNOT00000078247 2 1 1 81 13 105281905 105281924 TGCTGTACCTTCGTCTTCTC 60 105281963 105282742 GTCCATGTACTTTATTTCTGGAGC 60 Novel Rattus norvegicus 81 AABR07022064.1 ENSRNOG00000053957 ENSRNOT00000092005 3 1 1 86 13 105472751 105472769 GTTCGTGCTGCTAGAACTG 59 105470447 105472701 CAGTGTTTGGCGTTATCCT 58 Novel Rattus norvegicus 81 AABR07052926.1 ENSRNOG00000057412 ENSRNOT00000081064 3 1 1 74 3 84526853 84526871 AGTCATCTCTGGACTCGAG 58 84526233 84526252 GGCCTGATGTTGAAAGTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07022098.1 ENSRNOG00000056214 ENSRNOT00000086661 2 1 1 60 13 107491209 107501002 AGACGAGTGTATGCTGGTG 60 107501026 107501044 CTACACAAACCGTCACACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07024457.1 ENSRNOG00000059374 ENSRNOT00000080560 3 1 2 86 16 450876 451585 CATGGCAAACATGAAGAAACAG 59 450811 450829 TTCTTTCTTGGTGGTGCTG 58 Novel Rattus norvegicus 81 AABR07035309.1 ENSRNOG00000054511 ENSRNOT00000082137 1 1 2 84 12 10130526 10130544 AACTTGTGCCCAAAGTTGC 60 10130278 10130478 CTTCTGGCAGAATCTGCAC 59 Novel Rattus norvegicus 81 AABR07066114.2 ENSRNOG00000052777 ENSRNOT00000088946 3 1 1 60 9 3026498 3026518 GGAAGTGATTTCAAAGTGCCT 59 3026458 3026478 TGTTCTGATGATTTCCTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024648.2 ENSRNOG00000056373 ENSRNOT00000077775 3 1 1 83 16 10107645 10112021 CTTTGAATAGGCATTTGTGGG 58 10112065 10112084 GATCCAACTCAGGTTGTCAG 58 Novel Rattus norvegicus 81 AABR07004482.1 ENSRNOG00000054650 ENSRNOT00000082947 1 1 1 83 1 144847522 144847847 AAAGAAAGAGTCATGGGCC 58 144847894 144847912 CATTCACGAAGAAGGTGGT 58 Novel Rattus norvegicus 81 AABR07035486.1 ENSRNOG00000059220 ENSRNOT00000080542 3 1 1 123 12 17720685 17729351 AGAGAATGGGACTGTCTACAC 59 17729435 17729454 AAATACTGACCAGGCTCGAG 60 Novel Rattus norvegicus 81 AABR07066636.1 ENSRNOG00000052783 ENSRNOT00000085782 1 1 1 80 9 12068261 12068867 TAGCATTGACAGGAACATCTC 58 12068909 12068927 GGCATGTTCAGGATATCCG 58 Novel Rattus norvegicus 81 AABR07004703.1 ENSRNOG00000051996 ENSRNOT00000085870 2 1 1 81 1 151211013 151211032 GGAATTCCAAGCTACAGGGA 60 151211072 151216429 GCATCCTGTTTGTTTAGCTAGAG 60 Novel Rattus norvegicus 81 AABR07066782.2 ENSRNOG00000060676 ENSRNOT00000089080 3 1 1 82 9 16145590 16145612 CCAACTGACTTGCTTATGTTAGG 60 16145652 16149622 CAATTAACTGCATCAGCTCCA 59 Novel Rattus norvegicus 81 AABR07066820.1 ENSRNOG00000052724 ENSRNOT00000082584 1 1 1 80 9 17500955 17500973 GGATTCCTCAGTGTCTGCA 59 17501016 17501624 TTCTTTGCTGGATCTCTGGG 60 Novel Rattus norvegicus 81 AABR07066829.2 ENSRNOG00000061319 ENSRNOT00000083121 2 1 1 81 9 18187316 18191709 ATGAGATGTCCAAGTTCTCAG 58 18187255 18187274 TGCAAGGTCTATTGATCCTG 57 Novel Rattus norvegicus 81 AABR07024833.1 ENSRNOG00000058158 ENSRNOT00000089685 1 1 1 84 16 18597478 18598109 TTCCATGATACCAGCAGCC 60 18601917 18601935 ACTTTGCCTTCTCCTCCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053717.1 ENSRNOG00000057575 ENSRNOT00000087160 3 1 1 124 3 122417299 122417317 GAACAGACTGCTACCCGAG 60 122418894 122418913 CAATCTCAGAATCGCACAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07066841.1 ENSRNOG00000055149 ENSRNOT00000091305 2 1 1 81 9 18919148 18920198 CAGCCAACAATTGTTGTCAC 59 18919086 18919104 AGCAAGATCCTACTCTGGC 59 Novel Rattus norvegicus 81 AC109886.1 ENSRNOG00000055574 ENSRNOT00000077128 3 1 1 125 3 124615587 124615606 AGAAGGTGGACTGTTCAGTG 60 124615694 124616584 ACCTGTCACCAGTGAAAGG 60 Novel Rattus norvegicus 81 AABR07024875.1 ENSRNOG00000053348 ENSRNOT00000080272 3 1 1 79 16 20362912 20362930 CCAGGAACAGCTCTGATCC 60 20361554 20361574 CATGAACACCATAGCATGTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035780.6 ENSRNOG00000061778 ENSRNOT00000083323 1 1 1 80 12 22362444 22362864 CGAAATCACTCTGCAGTGC 60 22362907 22362926 TCCAAATTGGAACAGGAAGC 59 Novel Rattus norvegicus 81 AABR07035780.6 ENSRNOG00000061778 ENSRNOT00000083323 2 1 1 80 12 22362441 22362861 CACCGAAATCACTCTGCAG 59 22362905 22362923 AAATTGGAACAGGAAGCGG 59 Novel Rattus norvegicus 81 AABR07035790.2 ENSRNOG00000061009 ENSRNOT00000085223 1 1 1 84 12 22512875 22530798 CCAGAAGTTTCTGGTCTAAGAG 58 22530843 22530861 TTGAATTTGTGCTGCTTGG 57 Novel Rattus norvegicus 81 AABR07005032.1 ENSRNOG00000057739 ENSRNOT00000087078 2 1 1 80 1 176622004 176622817 CAACTGCTCTGGAGATATACCA 60 176622858 176622876 TACGGAATAGCTGCAAGGT 59 Novel Rattus norvegicus 81 AABR07071969.1 ENSRNOG00000056322 ENSRNOT00000089770 2 1 1 99 1 178596628 178607748 GCCTATTCAATTAAACCCACTG 58 178596550 178596568 TAATAACCAGCAGTTGCCC 58 Novel Rattus norvegicus 81 AABR07067036.1 ENSRNOG00000059635 ENSRNOT00000078358 2 1 1 144 9 27326031 27326049 TGTAGCATCCAGAGAAGCG 60 27325784 27325802 CATCCTCTGACAGGTTGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053881.1 ENSRNOG00000058229 ENSRNOT00000077944 2 1 1 80 3 132172912 132172932 TGCTGATGAAAGATCAACTCC 58 132096990 132172871 ATTCGGCCATAGTGTACCTC 59 Novel Rattus norvegicus 81 AABR07053953.1 ENSRNOG00000053531 ENSRNOT00000079800 3 1 1 85 3 133764863 133778898 CCACAAAGAACAAAGTCACTC 58 133764798 133764817 ATGAGGATATAGCAGGAGCT 58 Novel Rattus norvegicus 81 AABR07054025.2 ENSRNOG00000058266 ENSRNOT00000087994 2 1 1 71 3 136374254 136376515 TGTAGAAAGTTTGTCCCTTGG 58 136376548 136376566 AATGCACCTCAGGTCAGTC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07035926.1 ENSRNOG00000057434 ENSRNOT00000078049 1 1 1 100 12 28145664 28150421 GGTCAGGAACAAACTCCAG 58 28145582 28145600 AATCCATCTTCCCTCCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054281.1 ENSRNOG00000059685 ENSRNOT00000087630 1 1 1 80 3 146214857 146214878 CTTGACTTTACATCATGTCCCA 59 146211439 146214819 GCAGCAGAAGAAATAATCTCAG 58 Novel Rattus norvegicus 81 AABR07036074.1 ENSRNOG00000054150 ENSRNOT00000087767 3 1 1 81 12 33520986 33521377 TTGTTACAGAGTCTACCCATCC 59 33521419 33521437 CTCAGGAAGTTCTCCAGGG 59 Novel Rattus norvegicus 81 AABR07067402.2 ENSRNOG00000058672 ENSRNOT00000084225 1 1 1 80 9 43255288 43255818 GTATTCACAAAGGCACTTGCT 60 43255858 43255878 GTCTCTTCTGTCACTTGACAC 59 Novel Rattus norvegicus 81 AABR07036318.2 ENSRNOG00000056008 ENSRNOT00000086718 2 1 1 97 12 38117927 38117945 CTATGAGCAAGAACGAGCG 59 38118004 38120632 AGTATTGTGCAACTGTGACTC 59 Novel Rattus norvegicus 81 AABR07054460.4 ENSRNOG00000058515 ENSRNOT00000087389,ENSRNOT00000091713 2 2 2 95 3 154850625 154850643 GATTACAGCTTCTGCAGCA 58 154850220 154850571 CTATTATTTCCAGACATCCTCTCC 58 Novel Rattus norvegicus 81 AABR07005921.1 ENSRNOG00000057633 ENSRNOT00000078400 3 1 1 80 1 206566614 206566632 CCTGCACAAAGAGTGTGAC 59 206566674 206569727 TCCTCTGACCACTTTAGAAGC 60 Novel Rattus norvegicus 81 AABR07036417.1 ENSRNOG00000056261 ENSRNOT00000083958 3 1 1 60 12 42646957 42646975 CTCCAGTTTCACGTCTTGC 59 42642393 42642411 CCTCATCCGTCTTGTCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07067749.1 ENSRNOG00000051735 ENSRNOT00000088574 2 1 1 106 9 60881860 60883672 TCATGATGATCAGGTCAGGA 58 60881773 60881791 AGAAAGTGTTGCAGGAAGC 59 Novel Rattus norvegicus 81 AABR07026137.1 ENSRNOG00000054486 ENSRNOT00000084407 3 1 2 95 16 65194745 65194763 TAGATCACGTGGGATGGAG 58 65194822 65254092 CACTTAGCGCTCCTTTCAG 59 Novel Rattus norvegicus 81 AABR07036452.1 ENSRNOG00000058699 ENSRNOT00000088109 2 1 1 82 12 43658333 43658351 AACTTTCTTGCCAGCTTCC 59 43658394 43658551 TTTCCCAACATCTGATGATTGG 59 Novel Rattus norvegicus 81 AABR07005977.3 ENSRNOG00000059695 ENSRNOT00000083710 2 1 1 88 1 210397985 210398006 CCCAGATTTCCAAATCTATTGG 57 210398595 210398614 AACTGTACTTTCGGAGTAGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07026271.2 ENSRNOG00000061651 ENSRNOT00000081550 3 1 1 80 16 70016747 70018436 CACCGTCCAGAAGATATTATGG 59 70016688 70016709 AATCTTCTCAGACACTTCATCC 58 Novel Rattus norvegicus 81 AABR07036626.1 ENSRNOG00000051412 ENSRNOT00000083327 1 1 1 65 12 50622002 50622020 ACTCCAAGAATCGTCCCTC 59 50623566 50623585 GGCTGCATATTTCTCTTGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AC094001.2 ENSRNOG00000054222 ENSRNOT00000088592 2 1 1 61 1 216936885 216936903 AGGAGATTTCTGCCCTGTG 59 216934547 216934566 GGAGTTGAGGACTCTTTGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07054680.1 ENSRNOG00000058758 ENSRNOT00000087486 2 1 1 60 3 166823193 166823211 GGGTCATTCATACGAGTGG 58 166823235 166823253 GTATCAGGGAGTTGCTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036640.1 ENSRNOG00000054829 ENSRNOT00000085103 2 1 1 60 12 51366311 51366329 GGAAGGCCTGTTAGAACAC 58 51362296 51362316 CTGGATCAGGTTCCTCTTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07054755.1 ENSRNOG00000052268 ENSRNOT00000084074 1 1 1 94 3 168821029 168821047 TATCCCATGATGCTCTGCC 59 168821105 168821697 TTTGTAGTCCGCAACTGTG 58 Novel Rattus norvegicus 81 AABR07054809.1 ENSRNOG00000052782 ENSRNOT00000091217 2 1 1 62 3 169966069 169966087 ATTTATTCCAGCAACGGCT 58 169966194 169966213 TCATTCTGAAGCAGAATGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07068046.1 ENSRNOG00000059494 ENSRNOT00000084822 1 1 1 60 9 79450091 79450109 AGAAATTCGTGCTGCATGC 60 79374526 79374544 CCCTGAGAAATACCCACGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07054818.1 ENSRNOG00000058392 ENSRNOT00000085442 2 1 1 80 3 170477929 170477948 CAGAGTAGAGAAACAGTGGG 57 170477990 170479107 CAGGGTTGAGTGTACTTCTC 58 Novel Rattus norvegicus 81 AABR07037151.1 ENSRNOG00000055212 ENSRNOT00000082890 1 1 1 80 X 14552013 14552997 CTCTCCAGGTCAATGTTAACTC 59 14553036 14553056 ATTGCCTTCCAAGTAACATCC 59 Novel Rattus norvegicus 81 AABR07054832.1 ENSRNOG00000051547 ENSRNOT00000084641 2 1 1 87 3 171081386 171082682 TCTTCCAGGAGAGGAGAGG 59 171081317 171081335 AGAGACCAAGCTCAGATGG 59 Novel Rattus norvegicus 81 AABR07054837.1 ENSRNOG00000058726 ENSRNOT00000078943 3 1 1 148 3 171242108 171243419 ATGCTGACCATGATCAGGG 60 171243652 171243671 ACATTAGCAAGTACCTGGGT 59 Novel Rattus norvegicus 81 AABR07068085.1 ENSRNOG00000055174 ENSRNOT00000088612 2 1 1 80 9 82828685 82828704 AGATTTCTCTTCCCAGTGAC 57 82826486 82828644 CTTGTTGGTCATAAATGCCTG 58 Novel Rattus norvegicus 81 AABR07068094.1 ENSRNOG00000052509 ENSRNOT00000078476 3 1 1 81 9 83398647 83398804 TATTCAGCAGGTCTTGGTCC 60 83398848 83398866 TCGGTTGAAGGTTCTGGTC 60 Novel Rattus norvegicus 81 AABR07068198.2 ENSRNOG00000054702 ENSRNOT00000081485 3 1 1 96 9 89928369 89929096 TTTGAAGACTTTGCTGCGAG 60 89929155 89929173 CTCTGTAACTGCCAAGTGC 59 Novel Rattus norvegicus 81 AABR07006536.2 ENSRNOG00000057614 ENSRNOT00000080182 2 1 1 81 1 238932785 238932808 GTTTAAAGGTAACCTCCAGATCTC 59 238932843 238933414 GTTTCTATCATCCAGTAGATGTGG 59 Novel Rattus norvegicus 81 AABR07039024.1 ENSRNOG00000061799 ENSRNOT00000085184 1 1 1 83 X 66412469 66412669 ACTAGGAAGGTGCAGAAGAC 59 66412715 66412733 TACGGTATGCTCCAAAGCC 60 Novel Rattus norvegicus 81 AABR07039024.1 ENSRNOG00000061799 ENSRNOT00000085184 3 1 1 84 X 66412469 66412669 ACTAGGAAGGTGCAGAAGAC 59 66412716 66412734 GTACGGTATGCTCCAAAGC 59 Novel Rattus norvegicus 81 AABR07006654.1 ENSRNOG00000051821 ENSRNOT00000077989 3 1 2 80 1 244421287 244540122 CTTTCCTCTTATGTCATGTGCT 59 244421228 244421246 AGTTAGAGTGCAAGCAGGT 59 Novel Rattus norvegicus 81 AABR07006654.1 ENSRNOG00000051821 ENSRNOT00000088213 2 1 2 83 1 244421283 244436944 CTTCCAAGAAGTGCTGGGA 60 244421218 244421239 ATAGCTTACCAGTTAGAGTGCA 59 Novel Rattus norvegicus 81 AABR07026596.3 ENSRNOG00000060353 ENSRNOT00000082350 1 1 1 83 16 85391119 85392616 AAAGCCAAGTGTTTCAGGG 59 85391054 85391072 AAAGCAGCAAGTACCTCAG 58 Novel Rattus norvegicus 81 AC117971.2 ENSRNOG00000059452 ENSRNOT00000083273 1 1 1 63 7 19840748 19840766 TACTAGACGGAGTCTGGGT 59 19839404 19840724 ACGAACTACCCAAACATATTCG 59 Novel DesignRelaxed Rattus norvegicus 81 AC117971.2 ENSRNOG00000059452 ENSRNOT00000083273 3 1 1 64 7 19840748 19840767 CTACTAGACGGAGTCTGGGT 60 19839404 19840724 ACGAACTACCCAAACATATTCG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07040249.1 ENSRNOG00000057035 ENSRNOT00000086634 3 1 1 83 X 96396416 96396434 CTGTGACAAGTTTGCAGGA 58 96396140 96396159 GTTCCCAGAAAGAGTTGCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006752.1 ENSRNOG00000056210 ENSRNOT00000090926 3 1 1 70 1 251400935 251400954 ATGTAGTCACTGCTGAAGCA 60 251387973 251400904 ATCTTATGAAGGAGAGGCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056415.2 ENSRNOG00000058322 ENSRNOT00000087908 2 1 1 82 7 24400119 24403938 CCATTTCTAAGAGACAACATCG 57 24403979 24403999 ATGAACCTTACTTCTGCTCAG 58 Novel Rattus norvegicus 81 AABR07068614.1 ENSRNOG00000060213 ENSRNOT00000080518 3 1 1 132 9 112181725 112206020 CTCTGTAGAGATATGGAGCCT 58 112181613 112181631 GAAGAGCATTTCCCACAGG 59 Novel Rattus norvegicus 81 AABR07056442.1 ENSRNOG00000060955 ENSRNOT00000077424 1 1 1 80 7 25763391 25764002 ATTCCAAGGCTGTAGGTGG 59 25763329 25763348 CGTGCAGGATAGAGAAGAGG 60 Novel Rattus norvegicus 81 AABR07027007.1 ENSRNOG00000056763 ENSRNOT00000086596 1 1 1 60 17 10451426 10451444 GTATCAAGAGGGAGCAGCA 59 10450782 10450801 GGTTCATCTTCTGGAGAGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07042668.1 ENSRNOG00000051791 ENSRNOT00000091435 1 1 1 86 19 2391275 2392048 AATGAGGGAAGAATCCAGC 57 2392097 2392116 CACTACAGCAAAGGATACCC 58 Novel Rattus norvegicus 81 AABR07027022.2 ENSRNOG00000060239 ENSRNOT00000078774 1 1 1 89 17 11208838 11208856 ATTCTTCCCACTGTCTCCC 59 11208909 11211332 TTCCCTCATCTAGGAGCCA 59 Novel Rattus norvegicus 81 AABR07027029.1 ENSRNOG00000053786 ENSRNOT00000087925 1 1 1 66 17 11654751 11654772 TCTCCGTGACTTAAGAATAGTC 57 11651351 11651369 GAAATCATGGGCTAGGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027039.1 ENSRNOG00000053981 ENSRNOT00000091714 1 1 1 80 17 11850949 11850969 TCCAGTTTGTGTCAAGTTGAC 59 11848083 11850909 TGACCAATGACTTATTCCGTG 59 Novel Rattus norvegicus 81 AABR07056705.1 ENSRNOG00000060894 ENSRNOT00000084659 3 1 1 88 7 37404496 37406720 GCTTTGTGGTTCCTACAGG 59 37406770 37406790 CTGGACTCATTTCCAATACCA 58 Novel Rattus norvegicus 81 AABR07027235.2 ENSRNOG00000060732 ENSRNOT00000090749 2 1 1 60 17 20636834 20636857 CCTGTGAAGTTACTGATTAGAGGA 60 20636876 20668845 AGCTGTGGTCCTTTACCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AC096326.1 ENSRNOG00000060966 ENSRNOT00000086048 3 1 1 97 1 265421209 265421227 CCTCTACCCTCAAGTGTCC 59 265429561 265429579 AGTTGTCCTTGGTCTCTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07027243.1 ENSRNOG00000061345 ENSRNOT00000089968 3 1 3 80 17 21002718 21005680 AGAATTGCAGTTTAGAGGACAG 59 21005718 21005739 GATGATCAAGAGATGGTGAACC 59 Novel Rattus norvegicus 81 AABR07056791.1 ENSRNOG00000055691 ENSRNOT00000081059 3 1 1 121 7 41415436 41416601 TTGATCTTAGCACACCACC 58 41415333 41415353 GCGAAGTCTTTATTGTGATCC 58 Novel Rattus norvegicus 81 AABR07027287.1 ENSRNOG00000051834 ENSRNOT00000086273 2 1 1 91 17 22983150 22984073 AGAACAATACACCACTTGGG 58 22983078 22983097 GGAGACCTTAGGTATTGGTG 57 Novel Rattus norvegicus 81 AABR07069360.1 ENSRNOG00000057602 ENSRNOT00000078630 2 1 1 85 8 18225369 18226137 CATTGCAGGGAAGACTCAC 59 18226186 18226204 CTTTCTCTTGCTCTTGGCT 58 Novel Rattus norvegicus 81 AABR07006925.1 ENSRNOG00000056850 ENSRNOT00000089632 3 1 1 90 1 271769391 271771579 CAGCTGAAAGTTCTGTCATCAG 60 271769322 271769341 CCAGTTCGTTGCTAAGTCTC 59 Novel Rattus norvegicus 81 AABR07069490.2 ENSRNOG00000058106 ENSRNOT00000082246 1 1 1 80 8 24108470 24114786 AGATCCTAAGTGGAATTCAGGT 59 24114825 24114845 TCTGTATTTATGGGAGCTGCA 59 Novel Rattus norvegicus 81 AABR07057176.1 ENSRNOG00000061637 ENSRNOT00000083123 2 1 1 110 7 58882490 58882508 GTGAGGATTCTGGGACAGG 60 58873760 58882417 ATAATGTCCCTTCGGGTCAG 59 Novel Rattus norvegicus 81 AABR07027390.3 ENSRNOG00000057157 ENSRNOT00000079814 3 1 1 104 17 27876747 27876765 CTTGTGGGAAAGCACAGAG 59 27869894 27869913 CAGTAAGGCAGGTTGTATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07069587.2 ENSRNOG00000051630 ENSRNOT00000090792 3 1 1 89 8 32638716 32638734 GAACAGTGGCTTGTGTTGG 60 32646572 32646593 AGCATCTGTCACTAGATCTTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07057325.1 ENSRNOG00000059391 ENSRNOT00000086676 2 1 1 81 7 65729589 65731372 CTTCCGACGGTCATTTACAG 59 65729527 65729545 AAGACAAGCAGGATCTCGT 59 Novel Rattus norvegicus 81 AABR07043365.1 ENSRNOG00000058666 ENSRNOT00000083526 2 1 1 80 19 27833483 27833502 ATGATGGACACAGGACATGG 60 27834579 27834597 CCTGCACCTTGTTTAGGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057385.1 ENSRNOG00000060670 ENSRNOT00000082115 2 1 1 61 7 69338622 69339911 AGACAGAAGAGTTGTTTGCA 58 69339935 69339953 CAGACTTCTCATGTTGGGT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07057443.2 ENSRNOG00000059258 ENSRNOT00000078256 2 1 1 81 7 71502093 71503862 AAATCATTCCTGAACACAGCG 60 71503905 71503923 TTTGTTCCTGTGTCCCTCC 60 Novel Rattus norvegicus 81 AABR07007078.1 ENSRNOG00000056390 ENSRNOT00000085111 2 1 1 90 1 279688281 279688299 GCATCAAAGCAGTAGAGCA 58 279694934 279694952 TTATCACACTGGTCACTGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028917.1 ENSRNOG00000053864 ENSRNOT00000085385,ENSRNOT00000088497 3 2 2 80 10 196629 197045 CCAGTGGATTCAGGAACGA 59 196567 196587 CAGAAGATGTCAGTCATCCCA 60 Novel Rattus norvegicus 81 AABR07028995.2 ENSRNOG00000057886 ENSRNOT00000083856 3 1 1 89 10 1702573 1702591 TCAGTTTGAGGAACACCCT 59 1701686 1701706 CCCTTCTTTACTGGTATTGGA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07070069.1 ENSRNOG00000053546 ENSRNOT00000089282 1 1 1 80 8 47557186 47557204 CCAATGGCAGCTTCTTTCC 60 47557247 47560344 ATGTGTCTTCAGAGGCTCAG 60 Novel Rattus norvegicus 81 AABR07057640.1 ENSRNOG00000054328 ENSRNOT00000090645 3 1 1 95 7 82158475 82158493 AGCAATCTTCACTGCTGTG 59 82158552 82160470 TTTCTCCAGAACAGCTGTG 58 Novel Rattus norvegicus 81 AABR07029175.1 ENSRNOG00000054141 ENSRNOT00000089720 1 1 1 76 10 11358544 11358564 GCTGATAAGAAACTGGTGGTG 59 11362046 11362064 TCTTCCAGCAGTGTACGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07057907.1 ENSRNOG00000053194 ENSRNOT00000079537 1 1 1 80 7 93611933 93617401 AATTCGTACAGATACGGCCA 59 93611872 93611891 TGTTCTTTCCAACCTTCACC 58 Novel Rattus norvegicus 81 AABR07029220.2 ENSRNOG00000054610 ENSRNOT00000086828 1 1 1 96 10 16183198 16183216 GTGAACAAACCCACCAGTG 59 16182897 16182915 GAAGTTTCCAGCCAACCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029220.2 ENSRNOG00000054610 ENSRNOT00000086828 2 1 1 97 10 16183198 16183216 GTGAACAAACCCACCAGTG 59 16182896 16182914 AGAAGTTTCCAGCCAACCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07070151.1 ENSRNOG00000058918 ENSRNOT00000091893 3 1 1 80 8 54639422 54640815 AGGTCCAAGCTCCTATGAC 59 54639360 54639378 AAGTCAGGATCTCGTGAGC 59 Novel Rattus norvegicus 81 AABR07070161.6 ENSRNOG00000060387 ENSRNOT00000091503 3 1 1 113 8 55537981 55538190 AAACAACAAGAGGCTGCTG 59 55537886 55537905 AAGGATCTCCAGTTGGTGAG 59 Novel Rattus norvegicus 81 AABR07041772.1 ENSRNOG00000060140 ENSRNOT00000089262 2 1 1 80 X 139264427 139281585 TTTCCTTTCAGCTGTGACTG 59 139281626 139281646 TGCTTACCTACTACAACACCA 59 Novel Rattus norvegicus 81 AABR07041772.1 ENSRNOG00000060140 ENSRNOT00000089262 3 1 1 80 X 139264428 139281585 TTCCTTTCAGCTGTGACTG 58 139281627 139281647 TTGCTTACCTACTACAACACC 58 Novel Rattus norvegicus 81 AABR07007793.1 ENSRNOG00000061197 ENSRNOT00000083741 2 1 1 83 2 28658167 28658186 AGAACAGTCACTCTCCAGAG 59 28657581 28658123 CTCTTCCTGCTATAACCTTCG 58 Novel Rattus norvegicus 81 AABR07042407.1 ENSRNOG00000058951 ENSRNOT00000077816 3 1 1 64 X 155110176 155110194 GGGAAAGCAATCTTCTGGC 59 155110222 155123445 ACTCATGCTGGACTCTGTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07042440.2 ENSRNOG00000057466 ENSRNOT00000080296 1 1 1 80 X 155796120 155796138 GCTCAAGTAAGAGGCAAGC 59 155794451 155796078 TTCTGCATCCTCAACATTTGG 59 Novel Rattus norvegicus 81 AABR07042440.1 ENSRNOG00000053800 ENSRNOT00000083165 2 1 1 88 X 155804008 155804026 AAGACATTGCAGGTGTTGC 59 155800249 155803958 GTGAGATAGCTAGTGGTCGAG 60 Novel Rattus norvegicus 81 AABR07058511.1 ENSRNOG00000061168 ENSRNOT00000090660 2 1 1 84 7 121438588 121456064 ACAATGTGAGGCCAGAGAC 60 121438522 121438541 TCTAGGTGGGTATGGGTACC 60 Novel Rattus norvegicus 81 AABR07042465.1 ENSRNOG00000060122 ENSRNOT00000082615 2 1 1 92 X 157591201 157591429 CTTGGTCTTTCAGGTGCAC 59 157591127 157591146 TCCTACCACATTCCCTTTCC 59 Novel Rattus norvegicus 81 AABR07007833.1 ENSRNOG00000051366 ENSRNOT00000077692 1 1 1 80 2 29795512 29796079 GACTCACTCAGGTACATATGC 58 29795452 29795471 CATAGCTCTATTCCTGCTCC 57 Novel Rattus norvegicus 81 AABR07007833.1 ENSRNOG00000051366 ENSRNOT00000077692 2 1 1 80 2 29795512 29796079 GACTCACTCAGGTACATATGC 58 29795452 29795472 CATAGCTCTATTCCTGCTCCT 59 Novel Rattus norvegicus 81 AABR07028039.1 ENSRNOG00000058764 ENSRNOT00000090269 1 1 1 86 17 54485324 54485342 AACATGTCTGAGGGAGCTC 59 54485391 54497523 CAAGTTCTCCTGTTCCAGTG 59 Novel Rattus norvegicus 81 AABR07007874.1 ENSRNOG00000054794 ENSRNOT00000091466 1 1 1 101 2 32297556 32297695 CTTACTGCAGAACTGCGTG 59 32297473 32297493 GGGAGTTCTGTCTTCAAACTG 59 Novel Rattus norvegicus 81 AABR07044427.1 ENSRNOG00000059881 ENSRNOT00000085168 2 1 1 80 20 5790676 5790696 ACTTGACTGTAATGGAGACGT 59 5790173 5790639 CCAGTAGGACCTTTATCCTATCTG 60 Novel Rattus norvegicus 81 AABR07044551.1 ENSRNOG00000054555 ENSRNOT00000090014 3 1 1 107 20 10492179 10493148 GGTATCTGATCCCTGCCTC 59 10492090 10492111 GGATATTTATAGGGCAGAGCAG 58 Novel Rattus norvegicus 81 AABR07028186.1 ENSRNOG00000053465 ENSRNOT00000089697 2 1 1 93 17 59365321 59365507 AAAGAATGGGTACAGGCGT 59 59365563 59365582 TCTACGTAAGTTCACTGCCA 59 Novel Rattus norvegicus 81 AABR07059158.1 ENSRNOG00000051878 ENSRNOT00000089132 2 1 1 68 4 5628140 5628158 CACTCATGGCCATAATGCT 58 5627199 5628110 AACTTAATCCTTCCTCAGCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07044569.1 ENSRNOG00000053658 ENSRNOT00000091555 1 1 1 80 20 10681521 10683507 AAATAAACCGAGGAAGCCAC 59 10681460 10681478 CGATTCTCCAAAGGCAAGG 59 Novel Rattus norvegicus 81 AABR07059239.1 ENSRNOG00000053011 ENSRNOT00000088521 3 1 1 93 4 10566667 10582640 CTGGTGTAAAGGAGCTGTG 58 10566592 10566610 AATGCTAACAGGGTTCCAC 58 Novel Rattus norvegicus 81 AC098763.1 ENSRNOG00000060382 ENSRNOT00000078305 3 1 1 100 20 12944628 12944646 CAACACCAATGAGCGAGAC 59 12942299 12942318 GTCTTCTTCCCAGGACATCC 60 Novel DesignNoJunction Rattus norvegicus 81 AC125688.1 ENSRNOG00000060545 ENSRNOT00000089369 3 1 1 73 20 14912479 14912497 TTCATAGCACCTCTGTGCT 59 14912290 14912445 TACTTCATGCTTCTTGGATCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028281.1 ENSRNOG00000054750 ENSRNOT00000090527 2 1 1 81 17 63020695 63020713 GTTTAGCTCCCAGTCACGA 59 63020241 63020652 AAAGTCACGTTTCGAACTCTC 59 Novel Rattus norvegicus 81 AABR07059499.1 ENSRNOG00000058022 ENSRNOT00000081034 3 1 1 81 4 22048280 22048300 TTAAGGTTCCACAAAGACAGC 59 22048341 22068929 TCAGATCTTCCTCTGCATTCC 60 Novel Rattus norvegicus 81 AABR07028513.2 ENSRNOG00000054192 ENSRNOT00000082986 2 1 1 81 17 73118410 73122174 GATATGTGGCAGGGATAAGAC 58 73122217 73122235 GCAAGACTTCCAGTGTCTC 58 Novel Rattus norvegicus 81 AC107447.1 ENSRNOG00000058221 ENSRNOT00000083635 3 1 1 60 4 31490629 31490647 AGACATCTTGTGTCCTTCG 57 31489693 31489713 CTGTGATAAGGTTGTTGGGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07059807.1 ENSRNOG00000054988 ENSRNOT00000078563 2 1 1 80 4 36726754 36726774 GGAATATCACCTCTTCACGTC 58 36726816 36728954 GGAATTCACTGGTCTTGGG 58 Novel Rattus norvegicus 81 AABR07028669.1 ENSRNOG00000061219 ENSRNOT00000083008 3 1 1 61 17 79978394 79978414 TAAGTGGATGGAACAGAGTGG 60 79964682 79978373 AATCTTTGCCGTTTCGAAGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07028691.2 ENSRNOG00000056948 ENSRNOT00000092155 3 1 1 60 17 81443968 81443988 AATGCTCAACTCATGACTCTC 58 81442725 81442746 GTTTGTAGGGCTATACCTCCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07059875.4 ENSRNOG00000057708 ENSRNOT00000080394 3 1 1 62 4 39637142 39637161 AATAACGTTTGCACCTGTCG 60 39637005 39637117 CTCACAGATGCTTGTCTGG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07044836.1 ENSRNOG00000061934 ENSRNOT00000081974 1 1 1 80 20 23027475 23027494 GATGAGGCCATGTTGATGAG 59 23025316 23027433 CAGAAGAGCTCCTTGTTGAG 58 Novel Rattus norvegicus 81 AABR07028797.1 ENSRNOG00000061071 ENSRNOT00000080704 2 1 1 80 17 86741678 86744785 CGCTCGAGAAGCTATCTCC 60 86741616 86741637 TGTCTTGTTATTGGTGAAAGGC 60 Novel Rattus norvegicus 81 AABR07059974.1 ENSRNOG00000057555 ENSRNOT00000078551 2 1 1 83 4 47296262 47330980 CATATCAGGTGAAATTGCTGTC 58 47331021 47331042 GATACTTGCTCTAAACGATGGA 58 Novel Rattus norvegicus 81 AABR07059991.1 ENSRNOG00000057163 ENSRNOT00000089128 2 1 1 99 4 47937488 47942058 GAGAAATACAGAAAGCAAAGGC 58 47937410 47937431 TCACATATCTTCATGCCTTACC 58 Novel Rattus norvegicus 81 AC128293.1 ENSRNOG00000061434 ENSRNOT00000085443 2 1 1 108 4 57779335 57781192 TGGACATTCTGGAAGGGAG 59 57781264 57781282 GAAACTGTTGCAACTTGCC 58 Novel Rattus norvegicus 81 AABR07071551.1 ENSRNOG00000056838 ENSRNOT00000085283 3 1 1 81 8 121662940 121662960 GAACACATTCCAGGGTTTGAC 60 121659181 121662897 CTTCTGTTCTTCCCTGCCA 60 Novel Rattus norvegicus 81 AABR07071567.2 ENSRNOG00000055260 ENSRNOT00000085415 1 1 1 110 8 122324378 122324396 TGAGAGGGCTTTCAGAAGG 59 122324469 122329458 ACAGAATACCAGACGAAGGA 58 Novel Rattus norvegicus 81 AABR07043863.1 ENSRNOG00000057385 ENSRNOT00000090619 1 1 1 109 19 44739663 44739681 GTGCCATCTGAATGGACTC 58 44738656 44739591 TTTCTGTTTCAGTGGCTAGC 59 Novel Rattus norvegicus 81 AABR07071611.1 ENSRNOG00000059087 ENSRNOT00000080918 3 1 1 90 8 124166779 124166974 TTTGGTCCTGCATCCTCAG 60 124167027 124167046 AGAGATCACTTACCCAGCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008788.1 ENSRNOG00000057307 ENSRNOT00000083980 1 1 1 151 2 73912289 73956522 ATGTTGTTCAGGACTCAGC 58 73956635 73956655 GCCAACAACTTGACATTTGAG 59 Novel Rattus norvegicus 81 AABR07043883.1 ENSRNOG00000054393 ENSRNOT00000085347 1 1 1 80 19 45850155 45850564 AGAAATAAGAAACGGAAGCACC 59 45850096 45850114 ACAACATCACAGAGGAGCT 59 Novel Rattus norvegicus 81 AABR07071659.2 ENSRNOG00000053160 ENSRNOT00000089661 3 1 1 100 8 126082688 126082708 GAAACTACCAAACTCCAAGCC 60 126082508 126082626 TAGCCAAACAGAAGGCCTC 60 Novel Rattus norvegicus 81 AABR07043940.1 ENSRNOG00000052678 ENSRNOT00000085197 1 1 1 80 19 48958330 48958351 GGAGAAATTCCTAAGAAGAGGC 59 48958390 48960137 TCTAACATCCCAGTCAGTGTC 59 Novel Rattus norvegicus 81 AABR07071659.3 ENSRNOG00000059340 ENSRNOT00000087790 1 1 1 80 8 126260757 126260775 CATAGGTGCTTTGTCCGAG 58 126258601 126260714 TTCACATCAATCCACTCCAG 58 Novel Rattus norvegicus 81 AABR07058711.1 ENSRNOG00000061588 ENSRNOT00000084840 2 1 1 63 7 134419369 134419387 CTATCGAAAGGCAGAGCAG 58 134419645 134419664 GCAGATATTAGCCACAAACC 57 Novel DesignNoJunction Rattus norvegicus 81 AC131521.1 ENSRNOG00000056336 ENSRNOT00000080553 1 1 1 81 2 78824479 78824499 CTCTGAAACCTTTGTCATCCC 59 78822825 78824436 AAGTAGGTTGAAGCCCAGG 59 Novel Rattus norvegicus 81 AABR07058723.1 ENSRNOG00000060824 ENSRNOT00000090216 2 1 1 163 7 135090436 135091626 GTCTGCCAGAGGTATCAGG 59 135091751 135091771 TTCTCATTGTCCCTGAGAGTG 60 Novel Rattus norvegicus 81 AABR07058723.1 ENSRNOG00000060824 ENSRNOT00000090216 3 1 1 163 7 135090435 135091625 GGTCTGCCAGAGGTATCAG 59 135091751 135091770 TCTCATTGTCCCTGAGAGTG 59 Novel Rattus norvegicus 81 AABR07071768.1 ENSRNOG00000061710 ENSRNOT00000087726 2 1 1 88 8 130347928 130350237 CCATAGAGTGAAATGGATAAGAGG 59 130350284 130350302 GTACAGTGGGAACTGAGGA 58 Novel Rattus norvegicus 81 AABR07071768.1 ENSRNOG00000061710 ENSRNOT00000087726 3 1 1 88 8 130347928 130350237 CCATAGAGTGAAATGGATAAGAGG 59 130350283 130350302 GTACAGTGGGAACTGAGGAG 60 Novel Rattus norvegicus 81 AABR07058805.1 ENSRNOG00000055438 ENSRNOT00000089767 3 1 1 81 7 138228628 138228647 GGTTGCTGTTGCTATCTGAG 59 138228691 138228871 TGAGTCCCAGAATTCCTGC 59 Novel Rattus norvegicus 81 AC103129.4 ENSRNOG00000057792 ENSRNOT00000090952 3 1 1 110 7 140075933 140075952 CTTTGGATATCCAGAACCCA 57 140073692 140075860 ATTTCTGCACAAATGCTGG 57 Novel Rattus norvegicus 81 AABR07007093.1 ENSRNOG00000052475 ENSRNOT00000081218 2 1 1 80 1 280957846 280959010 ACAGACAGAGGATCAAAGAGG 59 280957786 280957804 TCCTTGAGCGAAGGTTCTC 59 Novel Rattus norvegicus 81 AABR07009824.1 ENSRNOG00000056392 ENSRNOT00000083360 3 1 1 88 2 113907591 113907611 TGAGAACCAGAATTACTCCAG 57 113907660 113956749 AAACAAGACTCTGTGTAGCC 58 Novel Rattus norvegicus 81 AABR07010031.1 ENSRNOG00000055532 ENSRNOT00000089323 1 1 1 80 2 121240928 121243491 GAGCTGAAGACAAAGGATTCC 59 121243531 121243551 TTTGGCATCATGGGAAATGAC 60 Novel Rattus norvegicus 81 AABR07010180.1 ENSRNOG00000055930 ENSRNOT00000085419 2 1 1 80 2 127975757 127978976 TTGCAGACCATCTGTGAGG 60 127979019 127979038 AGGATGAAGAACCTTCTGGC 60 Novel Rattus norvegicus 81 AABR07010353.1 ENSRNOG00000054119 ENSRNOT00000085595 3 1 1 64 2 133026457 133028548 GCAGGAAAGTCCTACAGGA 59 133026411 133026429 TTCCCGTCATCCTCTACCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07010385.1 ENSRNOG00000052107 ENSRNOT00000085550 3 1 1 81 2 133881672 133881695 CCTCACTAAAGCAGACTTTAAGAC 60 133881734 133881881 TCTAGTTTCTCTGTAGCCGC 59 Novel Rattus norvegicus 81 AABR07010609.2 ENSRNOG00000058331 ENSRNOT00000077599 1 1 1 80 2 143347764 143357455 GAAGAAAGAGTCCCTATCATGG 58 143347705 143347725 CTGAGAGGTGACATGATTTCC 59 Novel Rattus norvegicus 81 AC111231.1 ENSRNOG00000052809 ENSRNOT00000083792 1 1 1 62 2 150267187 150267205 TCCTCAAGAGATACAGCCA 57 150268085 150268109 GGTATGAGTCTTAGAGTTTCAAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010985.1 ENSRNOG00000057008 ENSRNOT00000078751,ENSRNOT00000082918 1 2 2 108 2 156311190 156316035 CAAGAGTACTCCAAGGGCA 59 156311100 156311118 GGTAGGGAAGGGAAAGCTG 60 Novel Rattus norvegicus 81 AABR07011888.1 ENSRNOG00000053028 ENSRNOT00000085019 3 1 1 80 2 174306752 174306772 TCTAGGACAGATTCGACTCCA 60 174254896 174306711 GTTCCACTGAAATGTCCGTG 60 Novel Rattus norvegicus 81 AABR07011947.1 ENSRNOG00000061687 ENSRNOT00000090996 2 1 1 83 2 177482374 177489455 CAGAGACTTGGGTGGACTC 59 177482309 177482329 TCTCCTCATATGTAGTCAGCC 59 Novel Rattus norvegicus 81 AABR07012131.2 ENSRNOG00000060439 ENSRNOT00000089636 1 1 1 60 2 186751427 186751445 TAGAACTGCTTGGTGTCCT 58 186751197 186751215 GCTAAGTTACCCAGGACGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07012195.1 ENSRNOG00000053596 ENSRNOT00000078105 3 1 1 60 2 190505926 190505946 TCTTGGAATTGCCTTTATGGG 59 190505228 190505248 CTCCAGTGAAGCTTCATTTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07012640.1 ENSRNOG00000051856 ENSRNOT00000080205 2 1 1 60 2 201019179 201022088 TTGATAAGCTCTTTGCCCA 57 201022111 201022130 AGCATCCATTCTTCATGAGG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07014161.2 ENSRNOG00000055494 ENSRNOT00000080547 3 1 1 63 14 3983313 3993508 GTTCCCAATGTGCACTGAC 60 3983268 3983287 CTTCTGTTTCTTGGCAACTG 58 Novel DesignNoJunction Rattus norvegicus 81 AC129695.1 ENSRNOG00000053644 ENSRNOT00000083507 1 1 1 140 14 6875512 6877508 TATATGCCAGACTGCTGCC 60 6875390 6875409 ACAGAGATGCACTACATGCT 59 Novel Rattus norvegicus 81 AABR07014306.2 ENSRNOG00000057919 ENSRNOT00000090859 2 1 1 110 14 8895754 8895772 TATGAGATGGACCTCGGTG 58 8894486 8895680 CTTCACCATCCAGTGAGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072374.2 ENSRNOG00000057504 ENSRNOT00000090980 1 1 1 80 14 11453768 11453934 CTCAGAAGGATCAAGGTCCA 59 11453707 11453727 GGTAAATGTCAGACACCAGGA 60 Novel Rattus norvegicus 81 AABR07012884.1 ENSRNOG00000052614 ENSRNOT00000081168 1 1 1 80 2 213687107 213687637 ACATGACAGCCACAGATCC 60 213687678 213687699 TCTTTCTTGATGACGTTTGCTG 60 Novel Rattus norvegicus 81 AABR07013439.1 ENSRNOG00000061584 ENSRNOT00000077548 2 1 1 60 2 237482528 237482547 TTCACTTCAGCTTCCTAGCA 59 237482567 237482588 GTTATGTGTCTTCTAGCAACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013729.1 ENSRNOG00000051456 ENSRNOT00000080332,ENSRNOT00000085930 1 2 2 80 2 254033890 254034509 ATCTTGATCAGGAACTGACTACC 60 254034549 254034567 TTAACTCTCGCTTCGCCTC 60 Novel Rattus norvegicus 81 AABR07013764.1 ENSRNOG00000053817 ENSRNOT00000090223 1 1 1 80 2 255480332 255480352 TCACTGTGACTTTAACAGAGG 58 255476859 255480292 GCTTTCTCCATAGACTTCCTG 58 Novel Rattus norvegicus 81 AABR07013841.1 ENSRNOG00000059248 ENSRNOT00000078408 1 1 1 80 2 258783425 258783725 GTAATGCTGACAAGGTCATCC 59 258783767 258783785 TGAAGTCAGAGCAGACGAG 59 Novel Rattus norvegicus 81 ENSRNOG00000059050 ENSRNOT00000088535 2 1 1 80 1 42968141 42968160 ACCTCATGAATGTCAAGCTG 58 42967654 42968094 CACCATTCATCCTGCACTC 59 Novel Rattus norvegicus 81 SNORA61 ENSRNOG00000055345 ENSRNOT00000086162 3 1 1 60 2 229931505 229931523 TTGTGAGTTCAGAGGAGGA 58 229931463 229931481 ACTGGAAACCACAACACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028530.1 ENSRNOG00000047547 ENSRNOT00000072769 2 1 1 60 17 73695581 73695600 AATGCCTCCATGAGATCCAG 60 73695623 73695641 TCCTTCCACCCTTGATCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051692.1 ENSRNOG00000056273 ENSRNOT00000090581 2 1 1 60 3 19441797 19441817 GGTCTGGGACCTCTTATTCTC 59 19441839 19441857 TAAGTGGCAGCATCTTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061241 ENSRNOT00000083063 3 1 1 60 4 114638412 114638431 CCACAATGTAGGAAGCAGGA 60 114638371 114638391 GCCAGCACAAATATAGAACCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053741.1 ENSRNOG00000053270 ENSRNOT00000085922 1 1 1 80 3 123157004 123157026 AGCACCATATAACAAGAACGTG 59 123156945 123156964 TGAGAGTGGCTGACATTCTG 60 Novel Rattus norvegicus 81 AABR07053741.1 ENSRNOG00000053270 ENSRNOT00000085922 2 1 1 81 3 123157006 123157028 GAAGCACCATATAACAAGAACG 58 123156946 123156964 GAGAGTGGCTGACATTCTG 58 Novel Rattus norvegicus 81 AC109542.1 ENSRNOG00000054931 ENSRNOT00000079280 2 1 1 64 1 214446736 214446754 AAGGAACTCAGGACACTGC 60 214446688 214446706 ATTTCAAAGCGTGGTTGGT 59 Novel DesignNoJunction Rattus norvegicus 81 LOC100912565 ENSRNOG00000050595 ENSRNOT00000074349 1 1 4 82 5 77725020 77725043 GAGAGTGCAGGAAACTATATTCAG 59 77724271 77724981 TGTATTCCCTCCGTCATACTC 59 Novel Rattus norvegicus 81 RGD1562392 ENSRNOG00000031833 ENSRNOT00000050420,ENSRNOT00000082579 2 2 2 80 9 4093085 4093105 GTCAGATTCAGACCTTCAAGG 59 4093145 4093513 CTTGAATCCATGTTGTCCCTG 59 Novel Rattus norvegicus 81 AC136795.1 ENSRNOG00000061236 ENSRNOT00000092119 3 1 2 87 10 4487999 4488719 CAGGCGAGCATAAGAAAGG 59 4488769 4488788 TTTCACTCCCATTCAACAGC 59 Novel Rattus norvegicus 81 LOC100360790 ENSRNOG00000021694 ENSRNOT00000076937 2 1 3 85 X 65559235 65559253 GTGAAGAATACGCTACGCC 59 65455501 65559186 CTGTGACCATCCTGTACCC 60 Novel Rattus norvegicus 81 U2 ENSRNOG00000052568 ENSRNOT00000087299 1 1 1 60 1 251102195 251102214 GAGTTGGAATAGGAGCTTGC 59 251102237 251102255 GGAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000053938 ENSRNOT00000091915 2 1 1 60 1 56864841 56864863 GACTACAGAAAGTCAAGAACAGG 59 56864803 56864822 CAGCGTAATCCTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr3 ENSRNOG00000009540 ENSRNOT00000076866,ENSRNOT00000012710 2 2 2 60 5 151395728 151395746 CACTGTCTACTGCCTCCTG 60 151395686 151395706 CAGGGTAAGGTAGGTGTAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307100 ENSRNOG00000038436 ENSRNOT00000058552 1 1 5 80 2 123659970 123659990 ATGATAACCTACCATGTGACC 57 123660030 123664570 CTCCTTCATCCTGTTCATCTG 58 Novel Rattus norvegicus 81 RGD1307100 ENSRNOG00000038436 ENSRNOT00000058552 2 1 5 80 2 123753598 123753618 GAAGGTCACAGTTAGACTCCA 59 123753658 123753782 AAATATGAGCGACCATCTCCA 59 Novel Rattus norvegicus 81 AABR07022134.1 ENSRNOG00000053694 ENSRNOT00000085932 3 1 1 120 13 109490651 109490669 GAGTGAAGAAGCCCTACCG 60 109490462 109490568 CTCACTCGCTTCTGAAACAG 59 Novel Rattus norvegicus 81 AABR07068154.1 ENSRNOG00000027719 ENSRNOT00000038372 1 1 1 72 9 86257216 86257234 CAAAGGAGTCAAGCTGTCC 59 86257160 86257178 TAGCACAGAACAGTAACCG 57 Novel DesignNoJunction Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000051675 ENSRNOT00000083238 2 1 1 60 3 38777692 38777713 ACAACTAGACAGACTGAACAGG 60 38777731 38777752 TAAATGAGTGACCAGGAGTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049862.2 ENSRNOG00000061027 ENSRNOT00000080301 2 1 1 103 5 141487797 141487817 CCGAAGAACATACTTGGAGAG 58 141487882 141487902 GTGATGTGAGTCTCACCAG 58 Novel Rattus norvegicus 81 AABR07049862.2 ENSRNOG00000061027 ENSRNOT00000080301 3 1 1 103 5 141487796 141487817 TCCGAAGAACATACTTGGAGAG 60 141487881 141487901 TGATGTGAGTCTCACCAGG 59 Novel Rattus norvegicus 81 AC113901.2 ENSRNOG00000060222 ENSRNOT00000077768 1 1 1 61 2 78427451 78427470 TGATGTGAAATGGCAGTCAC 59 78427356 78427374 CTCAACAACAGCACATCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC113901.2 ENSRNOG00000060222 ENSRNOT00000077768 2 1 1 62 2 78427451 78427471 TTGATGTGAAATGGCAGTCAC 60 78427356 78427374 CTCAACAACAGCACATCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC113925.1 ENSRNOG00000016661 ENSRNOT00000022332 1 1 1 66 1 169095042 169095060 CAAGAGGAGCAGATCCGAG 60 169095091 169095109 GCACAAAGAACACAAGCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AC120922.2 ENSRNOG00000060225 ENSRNOT00000079172 3 1 1 88 9 95346328 95346346 AAATTGGGTGAAGTCAGGC 58 95346446 95346465 GTAGCAACACTGGTAGAGGG 60 Novel DesignNoJunction Rattus norvegicus 81 Fam73a ENSRNOG00000056332 ENSRNOT00000090367 3 1 2 88 2 257505619 257514428 CAACAGAGCTAATCCTTGCAG 59 257505551 257505572 GGCTTTCACAATTAAAGCAGAC 59 Novel Rattus norvegicus 81 Fam73a ENSRNOG00000056332 ENSRNOT00000089370 1 1 2 80 2 257507266 257507364 CGCTCCAGAGAATGTATTTACC 59 257505620 257505640 TGCAAGGATTAGCTGAAAGAC 59 Novel Rattus norvegicus 81 AABR07061057.3 ENSRNOG00000057607 ENSRNOT00000088153 1 1 1 60 4 103403934 103403952 GGATTCCTGTTGCTATGGT 57 103403780 103403798 ATGGAGACTGGGTCATCTG 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000052155 ENSRNOT00000077187 2 1 1 60 13 96290030 96290052 CAATACAGAGAAGATTAGCCTGG 59 96290071 96290090 GAATGCTTCATGAATTGGCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC131885.1 ENSRNOG00000058920 ENSRNOT00000091946 1 1 1 80 6 136301482 136304003 TATAACCGAGACTGGTACAAGC 60 136304044 136304062 CTTGCTCCACATCCTCTCC 60 Novel Rattus norvegicus 81 SNORA36 ENSRNOG00000054237 ENSRNOT00000085859 1 1 1 60 13 44585952 44585973 AATTGGCTGAGGGAAATTACTG 59 44585988 44586012 GTAGGCTAGAAGTATACGAATAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000054237 ENSRNOT00000085859 3 1 1 64 13 44585895 44585913 GTTGAGTTCAGTTCAGGGC 59 44585941 44585959 AGCCAATTTCAATGTCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA35 ENSRNOG00000057745 ENSRNOT00000086074 2 1 1 68 X 118542498 118542519 TCCTTGTAACCAATTAGGTCTG 58 118542451 118542470 GCAGGATAGTTTCTCGTGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059396 ENSRNOT00000083945 1 1 1 60 19 17244629 17244647 CTGAACTCCAAGAGGACCA 59 17244667 17244689 AATAGATACCCTTGACCGAAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060960 ENSRNOT00000085053 3 1 1 61 15 20186331 20186349 CCAAGGCGCAATTATTGCT 60 20186288 20186310 CTATTTGACTCTGAAGCAGTGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121031.1 ENSRNOG00000048469 ENSRNOT00000075366 1 1 1 78 1 234836370 234836389 TCCCTGAAAGAATTCCAGGA 58 234836239 234836260 CCATGTGTTCTTTCTTGATTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AC128967.1 ENSRNOG00000022022 ENSRNOT00000030173 2 1 1 75 4 157026430 157026448 AGAAGAGGAGGTTGCACAG 59 157008609 157008627 CCACTGAGCCATTTCTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07027128.1 ENSRNOG00000061064 ENSRNOT00000081454 1 1 2 80 17 14947092 14947112 GCAAAGAATGTGGAAGAGACC 60 14946564 14947024 GTGACTAAATTCCTTCTTCCTCTC 59 Novel Rattus norvegicus 81 Rn60_1_1359.1 ENSRNOG00000051039 ENSRNOT00000076147,ENSRNOT00000076482,ENSRNOT00000076561 3 3 4 103 1 134884870 134884889 AGAACCCTTGGGAAATTCTG 58 134873735 134878985 CAAGCTGGGTGTAAATGCT 59 Novel Rattus norvegicus 81 AABR07025316.1 ENSRNOG00000055486 ENSRNOT00000091672 1 1 2 96 16 33375796 33375825 ATCAGGAACAGTTAAACAACCC 59 33375882 33375900 CTAAACCCGTCTGGACCTG 60 Novel Rattus norvegicus 81 AABR07067403.1 ENSRNOG00000056370 ENSRNOT00000081559 3 1 1 76 9 43488583 43488602 TGCCTGGTATCTTGTTTCTG 58 43488521 43488541 AAGTCAAACTTCCTCTGTCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030276.1 ENSRNOG00000051945 ENSRNOT00000086543 3 1 1 60 10 79210664 79210682 ATGTTTGGACTCCCAAGGA 59 79208794 79208812 AGGAACTACAGCTGAGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030566.1 ENSRNOG00000051740 ENSRNOT00000081453,ENSRNOT00000089480 3 2 2 96 10 93159183 93159763 CTCTCCAAGGTGGTAAAGTC 58 93159820 93159840 TGCTTCAGATCTTGAAGTTCC 58 Novel Rattus norvegicus 81 AABR07061541.1 ENSRNOG00000059365 ENSRNOT00000085264 3 1 1 60 4 132914646 132914665 TTGCCTTTGTTCTCACTCAG 59 132918165 132918184 ATGTTGCCTTTAATGTGAGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07062111.1 ENSRNOG00000055644 ENSRNOT00000088127 2 1 1 67 4 161342573 161342592 AACAGAGATGGTATTTGGCA 57 161387689 161387707 AGATCCAGAGTCAGTCGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062344.2 ENSRNOG00000059558 ENSRNOT00000077138 2 1 1 107 4 170077451 170077469 GAGAAAGTACTCGGGAACC 57 170075639 170075660 CCCATGTTGACAGTTTATATGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07062535.2 ENSRNOG00000056757 ENSRNOT00000091613 3 1 1 69 4 181524898 181524916 ATGTCGGTGACATCCACAG 60 181524172 181524190 TAGTGCCTCTTCTCTTGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07017770.1 ENSRNOG00000057185 ENSRNOT00000080224 1 1 1 60 15 30870085 30870103 CAGAAGCCTGGAAACTCAG 58 30868133 30868151 CCTCTTGAGGACACTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07017770.1 ENSRNOG00000057185 ENSRNOT00000080224 2 1 1 61 15 30870083 30870101 GAAGCCTGGAAACTCAGAG 58 30868130 30868148 GAGCCTCTTGAGGACACTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07001493.1 ENSRNOG00000058258 ENSRNOT00000090336 2 1 3 84 1 47513715 47513733 CCTTTGTCCAAAGCTGGAC 59 47513781 47534077 CGTGAACACCTCTGTTCCT 60 Novel Rattus norvegicus 81 AABR07018331.1 ENSRNOG00000059143 ENSRNOT00000077997 2 1 1 60 15 52501670 52501688 GAGCCATGTAAAGGGAAGG 58 52502260 52502278 GCCTTCCATCATAACTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019020.1 ENSRNOG00000061933 ENSRNOT00000082456 3 1 1 107 15 84004987 84005005 TTCAGAAGGTTTCTGCTGC 58 84009915 84009933 GTCTCTGTGCTTCCCTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AC111292.1 ENSRNOG00000052912 ENSRNOT00000091786 2 1 1 116 3 3955837 3955855 CTTCTTAGCCTGGCCAGAG 60 3956370 3956388 GGGAAAGAGGTTAGGTGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019086.1 ENSRNOG00000053968 ENSRNOT00000088122 2 1 2 85 15 87456925 87470767 GATGGAAGAGATGCAAGCG 59 87456858 87456876 CAGTCAAACCTCACAGAGC 59 Novel Rattus norvegicus 81 AABR07019442.3 ENSRNOG00000061422 ENSRNOT00000090589 3 1 1 72 15 105845853 105845877 GAATAGGGCTTACATAGACATAGAC 59 105849426 105849444 TTCATGGACGTTTGGTTCC 58 Novel DesignNoJunction Rattus norvegicus 81 LOC100911851 ENSRNOG00000061155 ENSRNOT00000087733,ENSRNOT00000085965 2 2 3 90 11 27575828 27575846 AAAGGAGAAGTCAGTGGGC 60 27575898 27576283 ATATGATTCATTGCTGGCTGG 59 Novel Rattus norvegicus 81 AABR07051879.1 ENSRNOG00000058335 ENSRNOT00000078782 1 1 1 60 3 25350841 25350859 GGAGAGTTTGACTGTGCTG 59 25335840 25335860 CTTTGGAACAACTCGTTTCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065113.2 ENSRNOG00000053131 ENSRNOT00000081103 2 1 1 60 6 110258848 110258868 AGATGGTTGGAGAACATTCTG 58 110258296 110258314 AGGACAGCATCAGTTAGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07003397.1 ENSRNOG00000057506 ENSRNOT00000084945 2 1 1 60 1 108840491 108840510 GGCTACTGTCAAGTAACCCA 60 108840346 108840368 AGTTCTTTACAGACTGACTGGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07066020.1 ENSRNOG00000060878 ENSRNOT00000086332 2 1 2 80 9 604413 604437 CCTTAGGTTCATTTATGAGACTGAG 59 604263 604375 AAGCCATTGATGATGCTGC 59 Novel Rattus norvegicus 81 AABR07052432.1 ENSRNOG00000053183 ENSRNOT00000082715 3 1 1 63 3 53506044 53506062 AGAAATGTCAATCCGCTGG 58 53444349 53444367 ATCCCTGATTGCTTCCCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065387.1 ENSRNOG00000061041 ENSRNOT00000088112 1 1 3 86 6 125304523 125306512 ATGGACAAACAACAGACGG 58 125304455 125304473 TTAGCCACCACTCATAGCC 59 Novel Rattus norvegicus 81 AABR07034455.1 ENSRNOG00000055412 ENSRNOT00000090855 1 1 1 140 11 72450133 72450152 CCTTGACCCAATCTGAAGAG 58 72450606 72450624 GAAGCTTCTGAGTCACCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052750.1 ENSRNOG00000060342 ENSRNOT00000086859 2 1 1 61 3 71664832 71664852 GTATGACAAATGCTGCTTTGG 59 71666555 71666573 AACAACTGAAGGCTTCTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065780.1 ENSRNOG00000059613 ENSRNOT00000084080 2 1 1 78 6 141112600 141112621 GACTGCTAAACATGAAGTTGAG 58 141112437 141112455 AGCTGTACTTCACACTGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07066188.1 ENSRNOG00000054742 ENSRNOT00000079245 1 1 1 67 9 4621520 4621539 CCTCAGTAAACCCACTTTCC 58 4622742 4622760 TCTGGGCCACAGTAAAGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07024799.1 ENSRNOG00000059678 ENSRNOT00000086383 3 1 1 66 16 17139385 17139403 ATTGGAGACAGTTCTGGGT 58 17138136 17138154 TTACAGTGTGCTACACGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054126.1 ENSRNOG00000054946 ENSRNOT00000079859,ENSRNOT00000082746 3 2 3 65 3 142297287 142297305 CAACAGCTTCTGGTACCCA 60 142293156 142293175 GCAAACTGGAAGGTACATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036067.1 ENSRNOG00000059299 ENSRNOT00000078223 3 1 1 105 12 33221226 33221244 TGGATCACATCTGTCGCTG 60 33231343 33231361 GTCAAGTCTCAGGGACTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07025818.2 ENSRNOG00000058850 ENSRNOT00000079165 2 1 1 144 16 51791833 51791851 CTACGCACCAATGTCTCTG 58 51790974 51790993 GCGAACACTAAATGGAATCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07005794.1 ENSRNOG00000060009 ENSRNOT00000085396,ENSRNOT00000079434 1 2 2 81 1 200364479 200364500 TGTAAAGTCACCAAGATTGCTG 59 200364542 200369334 GATGCTTCTTGCAGAGCTC 59 Novel Rattus norvegicus 81 AABR07067721.1 ENSRNOG00000058264 ENSRNOT00000082475 2 1 1 70 9 59448121 59448140 GCCTTCCTGTTCATAGTCAC 58 59450900 59450919 TATCTTCCATAGCTTGCCCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07037477.1 ENSRNOG00000058312 ENSRNOT00000086941 1 1 1 60 X 21946874 21946892 GCCAAATGGGTCATTTCAC 58 21946373 21946391 AAACGTGCTGAGAAATCCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07072528.2 ENSRNOG00000057520 ENSRNOT00000090119 2 1 1 73 16 82332005 82332023 CTTCATTGTGGACATGGCT 58 82331607 82331625 CACGAAGACAAGCCTTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AC112739.1 ENSRNOG00000056652 ENSRNOT00000083529 3 1 1 88 7 24031881 24031899 CTTGATTCACGTGGGTCCT 60 24034094 24034113 GTAAAGGCTACCACAGTCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027243.1 ENSRNOG00000061345 ENSRNOT00000089652,ENSRNOT00000080985 1 2 3 86 17 20998251 20998269 AGCTCTCCCTATTTCTGGT 57 20998318 20999935 GAATTCTACTCCTCGGACAC 58 Novel Rattus norvegicus 81 AABR07057519.1 ENSRNOG00000055234 ENSRNOT00000081524,ENSRNOT00000079740 1 2 2 80 7 75853235 75853943 CAGAAAGATTCTGACAGGAATGAG 60 75853980 75854000 ATACGGTTTCCACATTGACAG 59 Novel Rattus norvegicus 81 AABR07043748.2 ENSRNOG00000055745 ENSRNOT00000092177,ENSRNOT00000085034 3 2 2 80 19 38366013 38366032 AGTGAGACCAAGAAGACTGG 59 38365658 38365971 GGCTGTAACATTCAGAACGA 58 Novel Rattus norvegicus 81 AABR07029217.3 ENSRNOG00000054877 ENSRNOT00000086196 2 1 1 64 10 15170424 15170442 ACTGACCTACGATTGGCAG 60 15175426 15175444 AACTGGTGTTGAGAAGCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07029221.1 ENSRNOG00000058625 ENSRNOT00000079187 3 1 1 60 10 16236008 16236028 TTGGAAGAAAGATACGTTGGG 58 16236409 16236431 CGTCTTCTTTCTATCTTGTGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AC105470.1 ENSRNOG00000056265 ENSRNOT00000084136,ENSRNOT00000090459 3 2 2 81 10 35049329 35053147 CAGACAATGACAGACCTTCC 58 35049267 35049286 TCTGTTCTCTAAGCCAGGAG 59 Novel Rattus norvegicus 81 AABR07058985.2 ENSRNOG00000059271 ENSRNOT00000086366 1 1 2 92 4 105158 105176 CATGCACAAACCAAAGGGA 59 105232 105337 TGTGGAAGCAGCTCATCTC 60 Novel Rattus norvegicus 81 AABR07044454.1 ENSRNOG00000053516 ENSRNOT00000078370 3 1 1 61 20 6392803 6392822 AAGAATTCAGCTCTGGACTC 57 6394604 6394622 CTGGAGTCTGTGGGTACTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07059159.1 ENSRNOG00000061925 ENSRNOT00000085383 1 1 2 80 4 5724000 5734562 TATTCCGTCATGTATTGCCA 57 5723939 5723958 TCATCAACTCCTCTCAACAC 57 Novel Rattus norvegicus 81 AABR07070714.1 ENSRNOG00000052474 ENSRNOT00000083205 1 1 1 60 8 81635477 81635495 ATTACTAGATGCCCTGGCG 59 81490660 81490678 TGGAATCAGCAACTTGTCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07060341.3 ENSRNOG00000061613 ENSRNOT00000078712 2 1 2 80 4 68437736 68440078 AACCTGAAGGTTGCTACCA 59 68440120 68440140 CTTTGAGTAGATGTCCCACTC 58 Novel Rattus norvegicus 81 AABR07071747.1 ENSRNOG00000057660 ENSRNOT00000079586 1 1 1 85 8 129157622 129157640 GAACCTAAGTCGGAGGCAG 60 129156219 129156240 TCTGAGAAACCATGTGATACAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058925.1 ENSRNOG00000057674 ENSRNOT00000084935 3 1 1 81 7 143620335 143620355 TATCTCACCTCAAATCTGCAG 58 143625186 143625204 TCTCTTCCTGCCTTTCGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07009536.1 ENSRNOG00000059377 ENSRNOT00000087131 3 1 1 85 2 102164297 102164315 TTAACTGCTGAGCCATCTC 57 102154153 102154173 ATCAATAAGCCAGATCTGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07007095.1 ENSRNOG00000056674 ENSRNOT00000077806 2 1 1 75 1 281314665 281314683 AAATGGAAGTTACCCAGCC 58 281314238 281314259 GAGGAAGATTTGTCGTTTAACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07010550.1 ENSRNOG00000055377 ENSRNOT00000090981 3 1 1 158 2 139942286 139942304 TAGCTCCAGGTTTGCTGAG 59 139945276 139945296 ATATAATCCCTCGCTGGAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013729.1 ENSRNOG00000051456 ENSRNOT00000080332,ENSRNOT00000085930 1 2 2 80 2 254033890 254034509 ATCTTGATCAGGAACTGACTACC 60 254034549 254034567 TTAACTCTCGCTTCGCCTC 60 Novel Rattus norvegicus 81 Mt-atp8 ENSRNOG00000033299 ENSRNOT00000046201 3 1 1 104 MT 7848 7866 CAAACCTTTCCTGCACCTC 59 7930 7952 GGGTAATGAAAGAGGCAAATAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mt-cytb ENSRNOG00000031766 ENSRNOT00000042098 3 1 1 60 MT 14430 14450 GGACGAGGACTATACTATGGA 58 14469 14490 GAATGATCCCAATGTTTCAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir30c-1 ENSRNOG00000035567 ENSRNOT00000053690 1 1 1 60 5 139699930 139699951 TGTGTAAACATCCTACACTCTC 58 139699891 139699909 AGTAAACAACCCTCTCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC499530 ENSRNOG00000031115 ENSRNOT00000049679 1 1 1 103 2 48966184 48966202 ATTCTGGGAGCAACATGAC 58 48966268 48968456 CAACTGTGATCCAAGATCGT 58 NA Rattus norvegicus 81 AABR07013086.1 ENSRNOG00000023365 ENSRNOT00000036228 1 1 1 90 2 222793387 222793405 CTGAGGACCAGGTTGTCTC 59 222793456 222793505 TTGTCATACTTGAGAGCAATGC 59 NA Rattus norvegicus 81 Fyb ENSRNOG00000013886 ENSRNOT00000018634 3 1 1 80 2 55958826 55958849 GGAGAAGAAGTTTACGATGATGTG 60 55958885 55961506 TCCAACACTCATACCTTGACTC 60 NA Rattus norvegicus 81 AABR07018028.1 ENSRNOG00000031618 ENSRNOT00000028062 1 1 1 103 15 36417781 36417801 TCATGGATGAGAATTCTGGGA 59 36417328 36417718 AGTGACAATTATCTTGCTCCC 58 NA Rattus norvegicus 81 LOC100365012 ENSRNOG00000049037 ENSRNOT00000052052 2 1 1 60 20 1165475 1165493 GTCCACATATTCTCCACGG 58 1165516 1165535 AGAAGACCTTAGACCTGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prrc2a ENSRNOG00000000852 ENSRNOT00000001133 1 1 1 80 20 5140379 5140482 CCATCTGGAAGGTCCTTCTC 60 5140318 5140337 CTGAGTCCGGAATACTCCAC 60 NA Rattus norvegicus 81 Ggnbp1 ENSRNOG00000000486 ENSRNOT00000000577 2 1 1 80 20 5620419 5621882 AATTGACTTTGGAGACCTCAG 58 5621923 5621942 TGTTTGTACAAGCCAAGGAG 59 NA Rattus norvegicus 81 Kcnj15 ENSRNOG00000001656 ENSRNOT00000002259 1 1 1 82 11 35580355 35584104 CCTACAGAGTGGTCCAAGG 59 35584150 35584168 CATTGCTGTGCTTCACCAG 60 NA Rattus norvegicus 81 Stoml1 ENSRNOG00000008530 ENSRNOT00000011383 2 1 1 91 8 63038834 63040465 CTCTGAAGATTGTGCCCAC 59 63040520 63040538 CAAGAGAAGAACCATGCCA 58 NA Rattus norvegicus 81 Il10rb ENSRNOG00000028638 ENSRNOT00000061345 3 1 1 80 11 31577360 31581513 TCAAGGAGTTTCTGAGTCACC 60 31581555 31581573 CGAACACTTCGGTTTCGTC 60 NA Rattus norvegicus 81 LOC100365810 ENSRNOG00000045885 ENSRNOT00000073068 1 1 1 60 8 105088123 105088141 GGTCTCAGCCCTAGATCAG 59 105088081 105088101 CTTCAGCATTTCCTTGGTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbrg1 ENSRNOG00000023850 ENSRNOT00000039729 2 1 1 80 8 40122266 40122286 AGAACCAGAATGAGAAGTACC 57 40120253 40122224 CAGCAGCATTCTCAAACAC 58 NA Rattus norvegicus 81 Tbrg1 ENSRNOG00000023850 ENSRNOT00000039729 3 1 1 80 8 40122265 40122285 GAACCAGAATGAGAAGTACCG 59 40120252 40122224 ACAGCAGCATTCTCAAACAC 60 NA Rattus norvegicus 81 Nupl1 ENSRNOG00000012644 ENSRNOT00000017204,ENSRNOT00000063943 2 2 2 80 15 40542411 40542429 TTGGAACAGGACTCTTTGG 57 40540160 40542369 ATGTAGTAGCTGTTGTTCCTG 58 NA Rattus norvegicus 81 Hcn1 ENSRNOG00000055382 ENSRNOT00000089218 3 1 1 80 2 50399665 50429809 CAAGAGAAGTACAAGCAAGTAGAG 59 50429845 50429866 GTAATCATGTATCTTCTGGCGC 60 NA Rattus norvegicus 81 RGD1562683 ENSRNOG00000042967 ENSRNOT00000065810 2 1 1 82 11 33757998 33758016 GAAAGCAGCTACTCTGAGC 58 33748099 33757952 CTGAAAGTACGCAGTCAGC 59 NA Rattus norvegicus 81 Bckdhb ENSRNOG00000009928 ENSRNOT00000013249 2 1 1 81 8 91464437 91474654 CTTCAGTATGGGCAAACTCAG 59 91474696 91474715 TAGGGTCTTTGGCCAATGAG 60 NA Rattus norvegicus 81 LOC680520 ENSRNOG00000027997 ENSRNOT00000033716 3 1 1 81 11 44072699 44074142 CCAACGTTAGAGAAGGTTGAC 59 44074184 44074203 ATGTTCGTTCCATCTCCTGG 60 NA Rattus norvegicus 81 LOC100910402 ENSRNOG00000060027 ENSRNOT00000083497 1 1 1 60 2 35416592 35416611 CTATGATCGCTATGTTGCCA 58 35416551 35416572 AGGTTGAGACATGATGATACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1531 ENSRNOG00000045748 ENSRNOT00000075303 3 1 1 60 11 43194918 43194939 CCATCTCTTAATGGATTGGTGG 59 43194957 43194978 CAGAGGTACTGATTTGTATGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cbln3 ENSRNOG00000020503 ENSRNOT00000090228,ENSRNOT00000027794 2 2 2 100 15 34550060 34550389 ATCTACTTCGACCAGGTGC 59 34549978 34549997 TGGAATCGGAAGCTGTAGAC 60 NA Rattus norvegicus 81 Hmgn1 ENSRNOG00000048226 ENSRNOT00000075126 1 1 1 95 11 39482929 39485177 CGGGAAAGGATAAAGCATCAG 59 39485234 39485252 CTGTAGTTTGCTGGTCAGC 59 NA Rattus norvegicus 81 Olr1539 ENSRNOG00000047514 ENSRNOT00000040089 2 1 1 60 11 43309850 43309872 TCTTCATCATCTACCTCATCACC 60 43309891 43309910 TTCCAGATGAGAGCGATCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000087268 2 1 5 81 X 26442579 26443954 AGCTATGAGGTGCTTACCC 59 26448478 26448498 CCTGGTACCACTTCATAGGAG 59 NA Rattus norvegicus 81 Dusp14l1 ENSRNOG00000046368 ENSRNOT00000074141 1 1 1 60 2 140836258 140836280 CCCATTAGACTGTACTTTGACAC 59 140836299 140836318 CATGCTTCTTGCTTACACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr143 ENSRNOG00000003543 ENSRNOT00000004758 2 1 1 80 X 23677446 23680117 CTGTGTCCAGGTGTGAGAG 60 23680160 23680179 CAAGGACAAGCATAAGTGGC 60 NA Rattus norvegicus 81 Ash1l ENSRNOG00000020386 ENSRNOT00000027629,ENSRNOT00000085690 3 2 2 80 2 188301063 188301083 AGAAAGCACAAATTGTAGCCC 60 188301122 188308319 CTGGAAGGAATTCCATTCACTG 59 NA Rattus norvegicus 81 Hiat1 ENSRNOG00000015502 ENSRNOT00000020907 2 1 1 80 2 219664444 219664464 TGTCTAGCATCACCTTTCCAG 60 219663613 219664402 TTCCCTGAACAACACCCTG 60 NA Rattus norvegicus 81 Abca4 ENSRNOG00000012892 ENSRNOT00000017878 1 1 1 80 2 225776681 225779394 CACCTCAAGTACAAGTTTGGA 58 225779435 225779454 CAAATCAGGAAGCAAGTCGT 59 NA Rattus norvegicus 81 RGD1565566 ENSRNOG00000042547 ENSRNOT00000068694 1 1 1 60 1 61553665 61553684 GTGAAGAACTTCGGCATCTG 59 61553707 61553725 GGTACATGTTGTGAGTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1329 ENSRNOG00000060221 ENSRNOT00000078003 1 1 1 60 8 43781997 43782016 CACTCTTCTCCCTGTTTCTG 58 43782039 43782057 ACTAAGCCCAAGTTTCCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360446 ENSRNOG00000019884 ENSRNOT00000026979 1 1 1 60 1 199654866 199654884 CAAGTGCAGGAATTGTGGG 59 199654824 199654843 GCTTTGATGGTGAATGAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Map4k2 ENSRNOG00000021061 ENSRNOT00000064798 2 1 1 80 1 221713914 221713935 ATATGTTTCCAGACACCATCCA 60 221713974 221714098 CTTGGTGAAATTGGATCTCGG 59 NA Rattus norvegicus 81 Vstm2b ENSRNOG00000017456 ENSRNOT00000023671 3 1 1 88 1 97634219 97634237 GTGGTGGTACCTCAAGGAG 59 97634286 97635344 CCTTATTTGTTACCTTGCTCCG 60 NA Rattus norvegicus 81 AABR07006267.1 ENSRNOG00000050024 ENSRNOT00000072135 1 1 1 80 1 227592728 227592749 TGGATTCACATTCATGGAAGAG 59 227592790 227595212 TCACAATCTGCACAATCCC 58 NA Rattus norvegicus 81 Abcd3 ENSRNOG00000011929 ENSRNOT00000016739 1 1 1 80 2 225345848 225345961 TTATGTTCCTCAGCGACCC 60 225345786 225345807 TTCTGATCCTCCTTTCCATCTG 60 NA Rattus norvegicus 81 Dppa3l1 ENSRNOG00000022376 ENSRNOT00000036219 2 1 1 60 8 60683603 60683622 CATCAGAGAAAGTCAACCCA 58 60683562 60683581 CCCTCTTCGTCTTTCATCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pex11a ENSRNOG00000015003 ENSRNOT00000020229 1 1 1 81 1 141478603 141478621 TCTAAGGCTGGCAAAGAGG 59 141476161 141478558 GTCTGAACCATTTACGGCC 59 NA Rattus norvegicus 81 Ccdc66 ENSRNOG00000028380 ENSRNOT00000039311 2 1 1 80 16 3116337 3117423 TAGAACACCAGAAAGCAATCAC 59 3116278 3116298 CCTTCCTTCTCTGTTCTTCCT 59 NA Rattus norvegicus 81 AABR07033979.1 ENSRNOG00000042474 ENSRNOT00000052182 3 1 1 92 11 46739119 46739138 AAACTCCGGCTTCTAGTACC 59 46739191 46739230 TGTGAGAAGCATCATAGAGGT 59 NA Rattus norvegicus 81 Rn60_X_0594.2 ENSRNOG00000051340 ENSRNOT00000076621 2 1 1 60 X 58520222 58520242 ATGAAGTCCTCCATCTTCCTG 59 58520263 58520282 GTGTGCTTTCAGATGCTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0594.2 ENSRNOG00000051340 ENSRNOT00000076621 3 1 1 60 X 58518422 58518440 CTTCTTCAGGTTCCCACAG 58 58518462 58518482 TCTCCTACAATTCTCAACCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bdp1 ENSRNOG00000017864 ENSRNOT00000076991,ENSRNOT00000024023 3 2 2 84 2 30335904 30335922 GTGCTCAGACAGATACCGA 59 30334425 30335859 CCACTGTTTCTTCTCCTTTCTC 59 NA Rattus norvegicus 81 Gys1 ENSRNOG00000020812 ENSRNOT00000028271 1 1 1 80 1 101442428 101442446 CATCTCCACGAACCTCTCC 60 101442488 101442588 AGAATGTAAATGCCGTAAGCC 59 NA Rattus norvegicus 81 Map3k11 ENSRNOG00000020773 ENSRNOT00000028185 1 1 1 80 1 221044282 221048607 GAAGTCCAACAACATTCTGCT 59 221048644 221048667 CCAAAGTCAGTAATCTTTAGGGTC 59 NA Rattus norvegicus 81 Pkd2l2 ENSRNOG00000025489 ENSRNOT00000037690 2 1 1 80 18 27193917 27193936 CACTTCTCTACCTGATGACG 58 27193979 27195740 GGTCCTTCCATGAACTTCC 58 NA Rattus norvegicus 81 LOC100911361 ENSRNOG00000051193 ENSRNOT00000076198 2 1 1 60 2 121130608 121130626 CACGATCCAAAGGAACCAG 59 121130566 121130585 TTTCAAAGCTCAGACCACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC127217.3 ENSRNOG00000051586 ENSRNOT00000088386 2 1 1 60 1 172464645 172464663 TATGTGATGCCCAAGTCCA 59 172464603 172464622 TGTAGAACACAGAAACCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cct3 ENSRNOG00000019090 ENSRNOT00000025824 3 1 1 80 2 187684254 187685112 AAGGAGAAAGCCAGACTGAC 60 187685151 187685173 GGATGTACTCTTCTTCCATTTGC 60 NA Rattus norvegicus 81 She ENSRNOG00000020797 ENSRNOT00000028225 3 1 1 84 2 189185504 189187705 CCTGTCAGTCCAGTTTGAG 58 189187753 189187771 CTTCAAGGTCTTCTGCCAG 58 NA Rattus norvegicus 81 Mpzl1 ENSRNOG00000003248 ENSRNOT00000004376 2 1 1 81 13 83815974 83816945 GTGGAAATAGACAACCTGCTG 59 83815913 83815931 GTAGAGTGAGCCCAAGGAC 60 NA Rattus norvegicus 81 Lmbrd2 ENSRNOG00000054751 ENSRNOT00000077646 1 1 1 80 2 58544390 58544408 TTCCAGATGGAATCATGCC 58 58544450 58555297 TGAAAGGTAACAGAATCCACG 58 NA Rattus norvegicus 81 Rdh13 ENSRNOG00000027919 ENSRNOT00000031462 2 1 1 80 1 72956213 72957040 GCTGCTCAAGGACTATGTC 58 72957084 72957102 GCTCCTGTCACGATAACAG 58 NA Rattus norvegicus 81 AABR07020847.1 ENSRNOG00000049403 ENSRNOT00000073921 1 1 1 82 13 43514571 43514589 TACATTAAGGCACTGGCAG 58 43494703 43514527 TTCTTCAGATCATAGGCTGTC 57 NA Rattus norvegicus 81 B4galnt3 ENSRNOG00000010344 ENSRNOT00000036721 1 1 1 80 4 152742741 152742761 CACAGACTATAGCAGTGAGGA 59 152742464 152742701 AGTTTCAGGTACTGGTAGCTC 59 NA Rattus norvegicus 81 Rn60_6_0026.1 ENSRNOG00000015559 ENSRNOT00000020833 1 1 1 60 6 2557320 2557338 GACCAGAGACAAAGCAGGA 59 2557278 2557296 CCAGCAGCTTTCTTCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sox14 ENSRNOG00000022084 ENSRNOT00000034277 2 1 1 62 8 108109187 108109205 GACTACAAGTACCGGCCTC 60 108109143 108109166 GAAGACATACCTGTCTTTCTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC682666 ENSRNOG00000039592 ENSRNOT00000060688 2 1 1 94 18 28522915 28524279 GATGATGCACCAGGATGGT 60 28524337 28524355 GGGACATATCAGGGAGCTG 59 NA InUTR Rattus norvegicus 81 Negr1 ENSRNOG00000021410 ENSRNOT00000029312,ENSRNOT00000089396 1 2 2 80 2 263401296 263476779 GAGTGGTCGTGAACTTTGC 60 263476822 263476841 ATCTTATCAGTCCACTGCGT 59 NA Rattus norvegicus 81 Flrt1 ENSRNOG00000022428 ENSRNOT00000030625 1 1 1 60 1 222349900 222349920 CCCTCTACTTACAGAACAACC 58 222349860 222349878 TTGGTCTTGAGGTCCTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp954 ENSRNOG00000022742 ENSRNOT00000042086 1 1 1 80 1 69856265 69856283 GATGACTCTCAAAGGCTCC 58 69856326 69857412 AGAAAGTTCAAGTCTCAGGG 57 NA Rattus norvegicus 81 Sfrp2 ENSRNOG00000009465 ENSRNOT00000012658 1 1 1 75 2 182726657 182726678 GACAACGACATAATGGAAACTC 58 182730107 182730128 TGATGTAGGTTATCTCCTTCAC 57 NA DesignNoJunction Rattus norvegicus 81 Sptlc1 ENSRNOG00000010882 ENSRNOT00000014546 1 1 1 80 17 11890139 11892287 GGAGATTGTAGAGCAATGCA 58 11892330 11892348 GGAAGGCACTTCTCTTCCT 59 NA Rattus norvegicus 81 Rn60_X_0616.3 ENSRNOG00000032361 ENSRNOT00000051547 1 1 1 80 X 60929658 60929677 CCTTTCTGGAACACATGTGG 59 60929720 60929750 AGACTAGGAAGCAGATGCC 59 NA Rattus norvegicus 81 Mzb1 ENSRNOG00000022009 ENSRNOT00000036301 3 1 1 82 18 28437584 28437602 CAGGAGCTGAGTGAATCCA 59 28437202 28437540 ACTTCTTGGACTCCATAGGAC 59 NA Rattus norvegicus 81 Abca13 ENSRNOG00000025645 ENSRNOT00000035612 3 1 1 80 14 89485418 89487595 CTGCAGAGTGTAAATTTGTTCC 58 89487633 89487654 TCTTGTTCATCCAGGTAAAGAC 58 NA Rattus norvegicus 81 Olr180 ENSRNOG00000033813 ENSRNOT00000047978 3 1 1 60 1 169856210 169856229 TTTCTCCTCCTGAGACTACC 58 169856169 169856189 GCTCACAATAAGTATGAGGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kctd18 ENSRNOG00000027091 ENSRNOT00000029879 1 1 1 166 9 64905114 64911594 TCAGGTGATCTGACAGGAG 58 64865034 64865052 TATCTCGCATCTCCTCTGC 59 NA InUTR Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000049859,ENSRNOT00000047817,ENSRNOT00000002220,ENSRNOT00000002223,ENSRNOT00000063864,ENSRNOT00000070871,ENSRNOT00000072140 1 7 7 80 11 46341088 46341109 AGAGCCGAAGTATCTGATAGTC 59 46336075 46341047 CGAGTGCGAGATTTACCTG 58 NA Rattus norvegicus 81 Zfp84 ENSRNOG00000029043 ENSRNOT00000077161,ENSRNOT00000035994 3 2 5 80 1 87656302 87656324 GCCATCAGTAATTTCACTACTGG 60 87656362 87656507 GACAGCAAATCTGGATACCAC 59 NA Rattus norvegicus 81 Tbc1d10a ENSRNOG00000006394 ENSRNOT00000008788 2 1 1 80 14 84443950 84443969 AGTATGAAACCATCGAGCAG 58 84444011 84444576 ACTCTATCACCTCCTGAACC 58 NA Rattus norvegicus 81 Satb2 ENSRNOG00000010188 ENSRNOT00000087684,ENSRNOT00000049259 3 2 2 83 9 63564834 63564852 ATGCCTTAAAGGAGCTGCT 59 63558401 63564790 TGGATGAAATCATACTCTGGGA 59 NA Rattus norvegicus 81 Ssx1 ENSRNOG00000027850 ENSRNOT00000030146,ENSRNOT00000085079 3 2 2 147 X 14910101 14910670 ATATGCAAGGCCTTCCAGG 60 14909671 14909690 AAACTGGTTGGTTCACTGTG 59 NA Rattus norvegicus 81 Tle3 ENSRNOG00000013013 ENSRNOT00000018467 3 1 1 80 8 66327533 66331410 TCCAGCACGAACAATTCTG 59 66331454 66331472 CATGCTGTAGTCTGCAGAG 58 NA Rattus norvegicus 81 Them5 ENSRNOG00000043445 ENSRNOT00000066020 3 1 1 81 2 195584043 195584061 CCTCCTTCAAGTCCAACAG 58 195584106 195585029 CAGTCCTGTTTGTCTGAGG 58 NA Rattus norvegicus 81 Vps52 ENSRNOG00000000470 ENSRNOT00000000549 3 1 1 80 20 5435889 5435908 TGTATCCACATCGTTCTCCG 60 5435516 5435846 CACCTGCTCCCAGTATCTG 60 NA Rattus norvegicus 81 Plcl1 ENSRNOG00000032659 ENSRNOT00000051463,ENSRNOT00000090621 1 2 2 82 9 62311728 62311746 AAAGGAAGGCTTGAAGGGA 59 62311790 62347595 CTCCTTGTCCCTTCAATACAG 58 NA Rattus norvegicus 81 Zfyve19 ENSRNOG00000012528 ENSRNOT00000016854 1 1 1 80 3 111020316 111020334 ACTATCACCTCCCAGACAG 58 111020378 111021057 CTTCTTCAGTGAGCTGCTG 59 NA Rattus norvegicus 81 Vom1r100 ENSRNOG00000055950 ENSRNOT00000085924 2 1 1 81 4 122006891 122006915 GTCACTATGACATGCCTTATATCTC 59 122006952 122008182 TATATGAGAACAGTGGCTGCT 59 NA InUTR Rattus norvegicus 81 Insrr ENSRNOG00000057702 ENSRNOT00000080693 3 1 1 80 2 187179264 187180469 TTGTCCAATTCAGCTACAGGA 60 187180511 187180529 AGGATGTGGACGAAAGTCG 60 NA Rattus norvegicus 81 AABR07002094.1 ENSRNOG00000046802 ENSRNOT00000072667 2 1 1 60 1 66389688 66389709 CATTGGCTGATTACCATGTCTG 60 66389730 66389748 CAAAGGGACTGAGTGTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Edrf1 ENSRNOG00000017728 ENSRNOT00000089957,ENSRNOT00000023877 3 2 2 80 1 205715612 205715632 CTAGTTGGTTCTAACATGCCT 58 205715672 205716339 TGGTTTGTTGTTATCCCTGAG 58 NA Rattus norvegicus 81 Rimkla ENSRNOG00000008625 ENSRNOT00000011586 2 1 1 81 5 138521794 138523768 GCAACTGCTTTCTAGGTGG 59 138521731 138521749 ATGTTGGACACCTGGATCG 60 NA Rattus norvegicus 81 Defb42 ENSRNOG00000038762 ENSRNOT00000059215 1 1 1 67 15 46166313 46166332 AGACTGTATCTGCTCCTCTC 58 46159704 46166283 AAACCACTTCTAACTCGGG 57 NA DesignRelaxed Rattus norvegicus 81 RGD1562161 ENSRNOG00000005135 ENSRNOT00000006867 2 1 1 80 X 38331090 38331108 AAAGCTTCCCTCAGTCACC 60 38330559 38331049 GATCCTCTGGATACCTCTTCTG 59 NA Rattus norvegicus 81 Stim1 ENSRNOG00000020425 ENSRNOT00000088370,ENSRNOT00000027685 3 2 2 81 1 167522444 167522748 TTAACTGCTAAGCAGGCAC 58 167522793 167522811 AGAGGATCTCGATCTGCTG 58 NA Rattus norvegicus 81 LOC100359656 ENSRNOG00000029090 ENSRNOT00000051511 2 1 1 60 X 77809040 77809061 GTAAGGAATGTTAGATGTGCCA 59 77809082 77809100 CGATACTTACAACAGCCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gga2 ENSRNOG00000018599 ENSRNOT00000025309 3 1 1 80 1 191966415 191966433 AGACTTCTCAAGAGCAACC 57 191965903 191966371 TTCTTGTTCCTCCTTGACC 57 NA Rattus norvegicus 81 Aox1 ENSRNOG00000015354 ENSRNOT00000068633 1 1 1 80 9 64957291 64958256 AAGACTTTCTGTAGAGCTTCTG 58 64958294 64958315 CGATCCATTTATTCCTTGATCC 57 NA Rattus norvegicus 81 Grem1 ENSRNOG00000026053 ENSRNOT00000037895 3 1 1 137 3 105206970 105214861 GAGGTGACAGAATGAATCGC 59 105206852 105206870 CATTGTGCTGAGCCTTGTC 60 NA InUTR Rattus norvegicus 81 Clca4l ENSRNOG00000036877 ENSRNOT00000055362 1 1 1 80 2 250800334 250802098 AAGCAACAAGGTGTTCTACTG 59 250800274 250800293 ACTTTCTTGTCACGCAACTG 59 NA Rattus norvegicus 81 LOC100911800 ENSRNOG00000045908 ENSRNOT00000065330 1 1 1 174 20 5283090 5283200 TCACTGGGAAATGCAGGAG 60 5282934 5282953 CTCCACAGTTACTCACAGGG 60 NA InUTR Rattus norvegicus 81 Vwc2 ENSRNOG00000049076 ENSRNOT00000071558 1 1 1 118 14 91204122 91227377 GAGGAGTTCGTGGTGTCTC 60 91227459 91227477 TGATCAGGCTCATACACGG 59 NA Rattus norvegicus 81 Atl2 ENSRNOG00000006523 ENSRNOT00000077543,ENSRNOT00000084673 1 2 3 65 6 2569076 2569094 GACAGACTAGCGACTCGAG 59 2569123 2593682 TTGCGAATCCTAAGGAGGT 58 NA DesignRelaxed Rattus norvegicus 81 RGD1566320 ENSRNOG00000036971 ENSRNOT00000055588 2 1 1 87 3 138765176 138766038 CCGAAGATGTCAGACTATGG 58 138766086 138766106 TCGCTAAATCAGAGTCTTCAC 58 NA Rattus norvegicus 81 Mir3560 ENSRNOG00000036567 ENSRNOT00000054671 3 1 1 79 X 16117947 16117965 CAGACCAGGCTTACCTTCC 60 16117886 16117905 TAATCCTTTGTCCCTGGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Retnla ENSRNOG00000001955 ENSRNOT00000002676 3 1 1 80 11 54545133 54545153 CCAGTGAATACTGATGGAACC 59 54544626 54545093 GGGATAGTTATCTTGATGGGC 58 NA Rattus norvegicus 81 Lca5 ENSRNOG00000009580 ENSRNOT00000044931,ENSRNOT00000086426,ENSRNOT00000090139 1 3 3 80 8 90936511 90937401 CACAAGCTGAAGGAGAAGG 58 90936449 90936468 TTTCTTTGGAGAGGACTTGG 58 NA Rattus norvegicus 81 Dcbld2 ENSRNOG00000055281 ENSRNOT00000084060 3 1 1 80 11 44256692 44256710 TGTGATTAGCAAAGGCACC 59 44255551 44256651 CTCGTAGATAAGTATCCCACCA 59 NA Rattus norvegicus 81 LOC100911721 ENSRNOG00000050201 ENSRNOT00000071891 3 1 1 80 1 220310762 220310780 TACCTGACCAAGAAGCCTC 59 220310823 220311643 CCCATTCTTCTCATCAGCTC 58 NA Rattus norvegicus 81 Arx ENSRNOG00000053562 ENSRNOT00000089828,ENSRNOT00000083362 1 2 3 64 X 62367014 62367032 TTCACCAGTTACCAGCTGG 60 62367060 62367078 AAGACGTCAGGGTAGTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adgrb1 ENSRNOG00000029450 ENSRNOT00000076800,ENSRNOT00000015578,ENSRNOT00000087578 2 3 5 156 7 115767352 115767370 GGAGAAGCTGGAGACACTG 60 115775908 115775926 ACAAGGACCACAGTTTCCA 59 NA DesignNoJunction Rattus norvegicus 81 Morc1 ENSRNOG00000032101 ENSRNOT00000046330 3 1 1 80 11 55027213 55027231 GATAACGGAACACTGCAGG 59 55018661 55027169 GTCTGAAGCTTCATCAGGG 58 NA Rattus norvegicus 81 Prl7d1 ENSRNOG00000016510 ENSRNOT00000081739,ENSRNOT00000022251 1 2 2 80 17 38996322 38998090 CGAATGACCTCGTTTGAAGAG 59 38998131 38998150 CACTAGATGTTGCAGAGGGT 60 NA Rattus norvegicus 81 Pole ENSRNOG00000037449 ENSRNOT00000067453 3 1 1 80 12 52443705 52443724 TCTCAAATTCCCTGATGCTG 58 52442951 52443663 TTAGTGATGAGGTAGCCCTG 59 NA Rattus norvegicus 81 Usp29 ENSRNOG00000015956 ENSRNOT00000055721 2 1 1 80 1 69995418 70003525 TAGAAACCTGGGACTTGGG 59 69995356 69995374 ATGAGGTTGAGTCCTCGTC 59 NA InUTR Rattus norvegicus 81 Serpinb13 ENSRNOG00000028194 ENSRNOT00000031789 1 1 1 80 13 27051124 27061746 GATGGCCTAGAGAAGATAATCGA 59 27061786 27061804 CCTTTGCTTCAGTTGTCCG 60 NA Rattus norvegicus 81 Dand5 ENSRNOG00000033368 ENSRNOT00000044133 1 1 1 81 19 25930835 25935725 TTGTTCAGGTGATCTCCAGG 60 25930773 25930791 TAGAAGGAGGAACAGTGGC 59 NA Rattus norvegicus 81 Ddx18 ENSRNOG00000025430 ENSRNOT00000037203 1 1 1 80 13 37530130 37530389 GAAGGCAGGGATCTTCTGG 60 37530068 37530086 AATGAGCTCGATCACAGGG 60 NA Rattus norvegicus 81 RGD1561206 ENSRNOG00000016331 ENSRNOT00000021855 1 1 1 60 1 195440929 195440948 ACTGACTGTACTGCTTTACC 57 195440888 195440906 AAAGTGTGCTGAGAACTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcg5 ENSRNOG00000005250 ENSRNOT00000007174 1 1 1 80 6 7943365 7943383 GTCAACAGCATAGTGGCTC 59 7938363 7943324 GGGCATTTCTTCTATGTTTCTG 58 NA Rattus norvegicus 81 Selt ENSRNOG00000013507 ENSRNOT00000018248,ENSRNOT00000084662 1 2 2 124 2 148774512 148774944 CTCCCTCAACCAATTTATAGACAC 59 148775027 148775045 CAGATGCTAGGAGCTTGCA 60 NA Rattus norvegicus 81 Selt ENSRNOG00000013507 ENSRNOT00000018248,ENSRNOT00000084662 3 2 2 196 2 148774512 148774944 CTCCCTCAACCAATTTATAGACAC 59 148776983 148777003 TGGTTCTCAATCATGTTGCTC 59 NA Rattus norvegicus 81 Mob4 ENSRNOG00000014980 ENSRNOT00000020536 1 1 1 80 9 61736875 61736893 ACTCAGATGACAGCAACTG 58 61736935 61739767 ATAATCTATGGCAGGACACTC 57 NA Rattus norvegicus 81 Dph6 ENSRNOG00000037356 ENSRNOT00000056522 3 1 1 80 3 106130819 106133655 ATGACAACCAAGTGGAGTC 57 106130757 106130775 CAGCATACAAGTCAATGGC 57 NA Rattus norvegicus 81 aicda ENSRNOG00000015478 ENSRNOT00000020762 3 1 1 81 4 155359945 155359965 AAGCTCCCTTTGACCTAAGAC 60 155360007 155365960 TTTGCTTCATCAAGAGGCTG 59 NA InUTR Rattus norvegicus 81 Rn60_X_0631.1 ENSRNOG00000051031 ENSRNOT00000076130 2 1 1 60 X 62457082 62457100 CCTGGGTCCTAAGTCTGTG 59 62457040 62457059 GAGTTCTTTAGCCTTTGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B9d2 ENSRNOG00000028753 ENSRNOT00000028029 1 1 1 60 1 82476563 82476581 CATTGACCTGCACTTTGCT 59 82479121 82479139 CACCTGGAGATGAAGTCGA 59 NA DesignNoJunction Rattus norvegicus 81 Abcg1 ENSRNOG00000001158 ENSRNOT00000001533,ENSRNOT00000083505,ENSRNOT00000078031 3 3 3 83 20 9835698 9835718 ACCTGAACTACTGGTACAGTC 59 9835763 9835979 CCACGGGAAACATGATCTG 59 NA Rattus norvegicus 81 Pias1 ENSRNOG00000034272 ENSRNOT00000066009 2 1 1 80 8 67809844 67809863 CACAAGAAGATCACTTCCCA 58 67808999 67809801 TAGGTGGAAGGTAACCTGG 58 NA Rattus norvegicus 81 Naaladl1 ENSRNOG00000021000 ENSRNOT00000054835 1 1 1 80 1 221483556 221483744 ATACTATAGCCACGTGCTCTG 60 221483786 221483804 GCCCTAGCATAAGCATTGG 59 NA Rattus norvegicus 81 Hexim1 ENSRNOG00000003203 ENSRNOT00000004272 2 1 1 60 10 91201566 91201585 CAGCCTCAAACTAGCAACTG 59 91201608 91201626 GCTCAGAGTTCTGCTCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpinb8 ENSRNOG00000002396 ENSRNOT00000079134,ENSRNOT00000003274 3 2 2 81 13 27896373 27906539 TCCTTTCGACCTTCAAGGA 58 27906581 27906602 CCTTCAGTGTCTTTAACAAAGG 58 NA Rattus norvegicus 81 Sh3bgrl2 ENSRNOG00000009613 ENSRNOT00000012904 3 1 2 114 8 91099565 91099583 CATGTCGGAGGAACAGAGG 60 91099661 91160219 CCCTCCACAGTATCGATCC 59 NA DesignNoJunction Rattus norvegicus 81 Insl6 ENSRNOG00000015868 ENSRNOT00000021298 2 1 1 60 1 247473677 247476489 GGAAGATTCACAAACCCAGG 59 247473636 247473654 ACTGAGATTCCCAAGTGTG 57 NA DesignNoJunction Rattus norvegicus 81 Ltbp1 ENSRNOG00000033090 ENSRNOT00000047674 2 1 1 80 6 21448210 21539872 GATACATTCTCAAGTGGCACC 59 21448150 21448168 GGCTTGAGCACATACTCCT 60 NA Rattus norvegicus 81 Sh3kbp1 ENSRNOG00000004322 ENSRNOT00000006438,ENSRNOT00000006741,ENSRNOT00000074898 1 3 3 80 X 37907294 37907312 TGGGAAGAAGTTACCTCCA 58 37893170 37907252 TAATCCTTGGTCTTTGTCCTG 58 NA Rattus norvegicus 81 Dnd1 ENSRNOG00000016894 ENSRNOT00000022685 3 1 1 82 18 29610145 29610163 GCCCTCTCAAATTGCACTG 60 29609445 29610099 GTGACTGCCCTTCTACCAG 60 NA Rattus norvegicus 81 Vpreb2 ENSRNOG00000001839 ENSRNOT00000002517 3 1 1 60 11 87158404 87158422 CTTCCTTCCTTGGAACCTC 58 87158362 87158381 CCAATGTTATGGTTGCTGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910689 ENSRNOG00000046318 ENSRNOT00000072294 1 1 1 80 10 78171100 78172703 AACAGAGATCTATGTGGTACCAG 60 78172739 78172761 CCAATTACTGGTTTGTCAGTAGG 60 NA Rattus norvegicus 81 Sfxn1 ENSRNOG00000018279 ENSRNOT00000024707 2 1 1 80 17 11068183 11068202 ACTGATCCCAGAAACATCCT 59 11065188 11068141 GATTCCTTGCCTGTAATCGT 58 NA Rattus norvegicus 81 Egr4 ENSRNOG00000015719 ENSRNOT00000021097 2 1 1 128 4 117295373 117295392 TAACAGACTCCTGCTTCCTG 59 117295264 117295282 ACATGAGGTTGAAGAGGGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nhs ENSRNOG00000030759 ENSRNOT00000041924,ENSRNOT00000091746 3 2 2 80 X 34669392 34671794 TTTGCAGTCATTCACAGATCC 59 34671833 34671854 TCTTGATTTGCTTCTGACAGAC 59 NA Rattus norvegicus 81 Gatad2b ENSRNOG00000015553 ENSRNOT00000021502,ENSRNOT00000086285 3 2 2 80 2 189723648 189725007 CATTACAGGGTCACAGTGTC 58 189725049 189725068 GTGCAATAACACGTTGAGAC 58 NA Rattus norvegicus 81 AABR07029925.2 ENSRNOG00000060650 ENSRNOT00000074380 1 1 1 80 10 60190784 60190802 TGTCTGGTGCTTATGTCCT 58 60151461 60190742 ACAGAATGACAATCTAGCCAC 58 NA Rattus norvegicus 81 Trim41 ENSRNOG00000002388 ENSRNOT00000003246 2 1 1 80 10 34161499 34161519 ACTTAGGAAGCATCTAGAGGC 59 34158405 34161457 TTCATCTGGCTCTTCAGCT 59 NA Rattus norvegicus 81 Ypel4 ENSRNOG00000060130 ENSRNOT00000083592 3 1 1 85 3 72137641 72137984 CCTGTTTAACTCCGTGGTC 58 72138033 72138051 AAATGTCAGCTACCGAGTG 58 NA Rattus norvegicus 81 Paqr5 ENSRNOG00000014164 ENSRNOT00000018988 1 1 1 80 8 66913887 66913905 TGAGTGTTACGTAGCCCTG 59 66909374 66913844 TGGAGTTCAAGAAACCTGGA 59 NA Rattus norvegicus 81 Paqr5 ENSRNOG00000014164 ENSRNOT00000018988 2 1 1 80 8 66921040 66921059 CTCAGCCTCTTCCAAATGAC 59 66917881 66921000 GAACCTCCACATAAAGAACCAG 59 NA Rattus norvegicus 81 LOC100910293 ENSRNOG00000048474 ENSRNOT00000073226 2 1 1 60 2 46067058 46067079 ATATGTTGGGTGTATGACACAG 58 46067097 46067118 GTAACACTCAGAAATGACACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gzmn ENSRNOG00000029860 ENSRNOT00000050660 1 1 1 80 15 35151740 35151975 CTATTAAAGTTGGAGAGTAAGGCC 59 35151683 35151701 ATTTACGTGGTCTTTGCGC 60 NA Rattus norvegicus 81 Nxpe5 ENSRNOG00000027061 ENSRNOT00000060024,ENSRNOT00000030161 2 2 2 80 12 19520752 19525973 CATGAGAAACATGGCCCTG 59 19526017 19526035 TGGTGGTAGAATCCAGAGG 58 NA Rattus norvegicus 81 Lrrc15 ENSRNOG00000038539 ENSRNOT00000002348 2 1 1 60 11 74051652 74051672 CCACATCTGTTTCCTCTACCA 60 74051693 74051712 GTTAGATCGGTGTAGTCGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tapbpl ENSRNOG00000027552 ENSRNOT00000038178 2 1 1 80 4 157741915 157741935 CTTCACAGATTTCCAAGGGAG 59 157741724 157741873 ATCTGTACCAAGTCCACGG 59 NA Rattus norvegicus 81 Psmb4 ENSRNOG00000020979 ENSRNOT00000028484 2 1 1 80 2 196045873 196045892 TATGCTAGGTGCTTCAGGAG 59 196045597 196045830 AGCTCCTCATCAATCACCA 58 NA Rattus norvegicus 81 Clip3 ENSRNOG00000050104 ENSRNOT00000072819 2 1 1 80 1 90965772 90966597 AAGTGCATCAAGTGACAATGAC 60 90965713 90965733 AGTTCTCTGATGCAATGTCCT 60 NA Rattus norvegicus 81 Svs5 ENSRNOG00000013834 ENSRNOT00000018537 3 1 1 107 3 160714570 160715142 CAATAGGCAGGTTGTCCTC 58 160715213 160715231 AGAAGCACGGACTATTTCC 57 NA InUTR Rattus norvegicus 81 Mir542 ENSRNOG00000049278 ENSRNOT00000073411 1 1 1 60 X 158152162 158152183 GATCATCATGTCACGAGATACC 59 158152199 158152222 CCAGACCTTTCAGTTATCAATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1117 ENSRNOG00000049455 ENSRNOT00000049758 2 1 1 60 8 17833065 17833084 TTCTGGAGGGAAGCATAGAG 59 17833024 17833046 CAGGGAAACAACAGATAGATGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp771 ENSRNOG00000043225 ENSRNOT00000023999 1 1 1 60 1 198690878 198690898 GAGGGTGAGGAGAAGTATGAG 59 198690920 198700160 CAACCTCCTTGTTGTCCAC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100910822 ENSRNOG00000046892 ENSRNOT00000049709 2 1 1 60 8 41954685 41954703 TGACATCTTCCCTCTCCTC 58 41954723 41954745 GCTCATAAGCTCATTGACATAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr196 ENSRNOG00000060953 ENSRNOT00000085141 2 1 1 60 1 170072800 170072818 TTTCCTATGCCCTCATCCT 58 170072758 170072777 TTAAGTCTGGCTTCACCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC363337 ENSRNOG00000042971 ENSRNOT00000041051 3 1 1 81 19 27861032 27861515 ATCCATGAAGAACAGGCCA 59 27860969 27860988 AATTGACATGACTGCCTCCT 59 NA Rattus norvegicus 81 Olr221 ENSRNOG00000048930 ENSRNOT00000048699 2 1 1 60 1 170988871 170988889 GCAGTGATGTCCTATGACC 58 170988829 170988850 TGATAGTGGAGTAGTGTAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sac3d1 ENSRNOG00000021003 ENSRNOT00000028509 3 1 1 122 1 221484797 221485851 TCTACAACTTGGGTTCCGT 59 221484693 221484713 CATAGTTGTCTTCACGGAAGG 59 NA Rattus norvegicus 81 Slc22a5 ENSRNOG00000008432 ENSRNOT00000081898,ENSRNOT00000086644,ENSRNOT00000011340 1 3 4 80 10 39207954 39210037 GATCCCAGTGAGTTACAAGAC 58 39207894 39207913 GATATTTCGTGTTCGGACCA 58 NA Rattus norvegicus 81 Igsf8 ENSRNOG00000007604 ENSRNOT00000010028 3 1 1 90 13 90693482 90696895 TAATACTTGGAGCCAGGTGC 60 90696948 90696966 CAGGAGATAGAGACAGCGG 59 NA Rattus norvegicus 81 Ceacam12 ENSRNOG00000042158 ENSRNOT00000044927 3 1 1 81 1 79478314 79481725 GTCCAAGTAAACAAACGTGG 58 79481769 79481787 GATTCTTCAAGGTCCTGGC 58 NA Rattus norvegicus 81 Cxadrl1 ENSRNOG00000029029 ENSRNOT00000051939 2 1 1 80 8 106840898 106840916 CACCTATCAGTGCAAGGTG 58 106837911 106840857 CTCCCAAGGATATTAGTGACAG 58 NA Rattus norvegicus 81 RGD1564036 ENSRNOG00000003068 ENSRNOT00000004111 2 1 1 80 10 35701604 35701622 TAAGACACAGCTCTCAGCC 59 35701665 35702229 TGATCCCATTTCCTCTTCCT 58 NA Rattus norvegicus 81 Nefm ENSRNOG00000013916 ENSRNOT00000018637 2 1 1 80 15 44858607 44858627 CGTCATTTGCGAGAATACCAG 60 44857127 44858568 CAGTAGTTTCCTATATGGGCGA 60 NA Rattus norvegicus 81 Recql ENSRNOG00000012602 ENSRNOT00000065576,ENSRNOT00000086365 3 2 2 80 4 176586986 176587092 ATGAGCTTCAGGTGGTAGTG 60 176586925 176586946 AATGATGGATGACAAACCTCAC 59 NA Rattus norvegicus 81 Fastkd1 ENSRNOG00000024335 ENSRNOT00000036585 2 1 1 80 3 55945949 55946606 CATACAGGACTTAAGGGCCT 59 55945888 55945906 AGCAGTCGTTCTTGAAAGC 59 NA Rattus norvegicus 81 Mir105 ENSRNOG00000059896 ENSRNOT00000085343 2 1 1 60 X 152585582 152585601 GTCAAGTGCTCAGATGTCTG 59 152585541 152585560 TAGCACATGCTCAAACATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562871 ENSRNOG00000033458 ENSRNOT00000050807 3 1 1 60 X 79547164 79547184 GAACATAGCAACAGATGTCCA 59 79547205 79547224 TATTATGAGGTTTGGCCTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054000.1 ENSRNOG00000050784 ENSRNOT00000074338 1 1 2 80 3 134413209 134418090 GAGGAGAAGGAACGTTTGC 59 134418132 134418152 GGTGCTCAGAGAAACATAGTC 59 NA Rattus norvegicus 81 AABR07054000.1 ENSRNOG00000050784 ENSRNOT00000074338 3 1 2 88 3 134413209 134418090 GAGGAGAAGGAACGTTTGC 59 134418142 134418160 GACAGAATGGTGCTCAGAG 58 NA Rattus norvegicus 81 Olr127 ENSRNOG00000034039 ENSRNOT00000045417 2 1 1 60 1 168905124 168905147 CTACAGAACTACCAATATCTCCCA 59 168905087 168905106 TGCCAATTTCACAATAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgap25 ENSRNOG00000009347 ENSRNOT00000012645 1 1 1 80 4 119285694 119285713 CACAGTCAAAGAAATCGCCA 59 119281666 119285651 TTCTGGTCACTTGAGGCTG 60 NA Rattus norvegicus 81 Mmd ENSRNOG00000002436 ENSRNOT00000087765,ENSRNOT00000086969,ENSRNOT00000003308 1 3 3 80 10 77772731 77781813 CATCAATGAATAACACTGACGG 58 77781854 77781872 TCTTGAAGAACACGACTCC 57 NA Rattus norvegicus 81 Olr1280 ENSRNOG00000050953 ENSRNOT00000073657 3 1 1 60 2 115075196 115075214 GTACCCATGCTGAATCCCT 59 115075237 115075256 TCAAGGCAATACTGACATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abca6 ENSRNOG00000046890 ENSRNOT00000073149 1 1 1 80 10 98489744 98491203 CTCTTATGCCTAATACCTTACTTCC 59 98489688 98489709 ATTCTTCCCATACTTCAGTTCC 58 NA Rattus norvegicus 81 Phf1 ENSRNOG00000000480 ENSRNOT00000059548,ENSRNOT00000091364 3 2 2 80 20 5530005 5530023 TTCAGACACTCCCAAAGGA 58 5530067 5530180 CTCCCTGAAATGAAACGGT 58 NA Rattus norvegicus 81 Adcy6 ENSRNOG00000054757 ENSRNOT00000088323,ENSRNOT00000082699 2 2 2 82 7 140281260 140281374 AATGTCAGCATCCTGTTTGC 60 140281197 140281216 AAGGTCATGACCAGTTCCTG 60 NA Rattus norvegicus 81 Zfp354c ENSRNOG00000029205 ENSRNOT00000081026,ENSRNOT00000000248 3 2 2 97 10 36312759 36313867 CTGCCTAGATTTCCAGATTCAG 59 36312683 36312702 ATCTGTTCTTTAGCAGCCCA 60 NA Rattus norvegicus 81 Mir125b2 ENSRNOG00000035502 ENSRNOT00000053625 2 1 1 60 8 45746956 45746974 CACAAACCCGTAGATCCGA 60 45746993 45747016 CATACCTATAGACACAAGCTTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir125b2 ENSRNOG00000035502 ENSRNOT00000053625 3 1 1 61 8 45746966 45746984 TAGATCCGAACTTGTGCTG 57 45747004 45747027 CCTAACAGACACATACCTATAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp3cc ENSRNOG00000009745 ENSRNOT00000082505,ENSRNOT00000012993,ENSRNOT00000084166,ENSRNOT00000091826 3 4 4 82 15 51927600 51936380 CCTTCAAACAAGAATGTCGGA 59 51927538 51927556 AGCAAGAGGAAGACAGTCG 59 NA Rattus norvegicus 81 AABR07035089.1 ENSRNOG00000047146 ENSRNOT00000042410 1 1 1 87 12 4267981 4267999 CCTTATGGTCCACTTGGTC 58 4268050 4297605 ATACAGACCTGGGAGTCTC 58 NA Rattus norvegicus 81 Agpat3 ENSRNOG00000001205 ENSRNOT00000001602 2 1 1 81 20 11130073 11130091 CACTCAAGTACCACCTGCT 59 11130136 11131026 TAGATAGCTGCAACCGTCC 59 NA Rattus norvegicus 81 LOC102550314 ENSRNOG00000050229 ENSRNOT00000074473 3 1 2 81 15 5808185 5808342 TATTCAGCAGGTCTTGGTCC 60 5808386 5808404 TCGGTTGAAGGTTCTGGTC 60 NA Rattus norvegicus 81 Zfp383 ENSRNOG00000020774 ENSRNOT00000074580 2 1 1 98 1 87792306 87797515 AAACATAAGAAACAGGTGGCG 60 87797575 87797593 ATCTTTGTACAGGGCCCTC 59 NA Rattus norvegicus 81 AABR07018318.1 ENSRNOG00000021823 ENSRNOT00000038845 1 1 1 90 15 51175094 51175112 TCCTTTGTCCAGGACACTG 59 51175021 51175042 TCCTCATCTTGGAGTCTTGAG 59 NA Rattus norvegicus 81 AABR07018318.1 ENSRNOG00000021823 ENSRNOT00000038845 3 1 1 95 15 51175094 51175112 TCCTTTGTCCAGGACACTG 59 51175016 51175037 TAGTGTCCTCATCTTGGAGTC 59 NA Rattus norvegicus 81 Luzp1 ENSRNOG00000022402 ENSRNOT00000091442 2 1 2 80 5 154870216 154897626 GCTCTGTAATGTTCAAGAGCA 59 154897667 154897686 TTCCTGTTCCTGACTGTGAC 60 NA InUTR Rattus norvegicus 81 Slc32a1 ENSRNOG00000015393 ENSRNOT00000020720 3 1 1 79 3 155103619 155105724 CATTCAGGGCATGTTCGTG 60 155105765 155105785 CGAAGATGATGAGGAACAACC 59 NA DesignNoJunction Rattus norvegicus 81 Snx14 ENSRNOG00000011348 ENSRNOT00000086161,ENSRNOT00000056818 3 2 2 80 8 96026551 96026730 CCTGATGTATGTAGGGCGA 59 96026489 96026508 TTAAAGAGGATTCGAGTGCC 58 NA Rattus norvegicus 81 Zbtb38 ENSRNOG00000012386 ENSRNOT00000016625 3 1 1 60 8 104593212 104593234 GATCTGTATTTCCAGTCATGTCC 59 104593174 104593192 CTCTGTAAACACTTCGGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pnpla1 ENSRNOG00000028622 ENSRNOT00000033064 2 1 1 80 20 6123404 6123423 CTCCTTCCAGTTCTCCTTGG 60 6123465 6124215 TATTCCTGCAGGATCACCAG 59 NA Rattus norvegicus 81 Golt1b ENSRNOG00000058386 ENSRNOT00000084700 1 1 1 80 4 176615337 176615358 GTGGTTGGCTTTATCAGAAGAG 59 176615396 176617328 GACCTTGTCTACGAATGATCTG 59 NA Rattus norvegicus 81 Etfdh ENSRNOG00000009538 ENSRNOT00000013262 2 1 1 80 2 178385309 178385329 TGCTGTACCTCAGATTACCAC 60 178384667 178385270 CTCTCCATATTCACTCCTTCCC 60 NA Rattus norvegicus 81 Oxct1 ENSRNOG00000043094 ENSRNOT00000065313 1 1 1 80 2 53923611 53925390 GATGGCATGTATGCTAACCT 58 53925431 53925451 GAGATGAACAGTCATGTTTGG 57 NA Rattus norvegicus 81 Dupd1 ENSRNOG00000013034 ENSRNOT00000017483 3 1 1 80 15 2796034 2805978 AGACGACCACAGTAAGATCC 59 2806021 2806039 ATCATCAGGTAGGCCAGGA 60 NA Rattus norvegicus 81 Ube2q2l ENSRNOG00000023261 ENSRNOT00000035153 2 1 1 60 X 10771923 10771943 GACAGCTTATATGACTGGCAC 59 10771883 10771901 CGTACAAGGGACTATCGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0009.2 ENSRNOG00000051909 ENSRNOT00000080670 2 1 1 60 20 1505306 1505324 CACCCACTGCTCTATTCAC 58 1505264 1505282 ACCCACTGACCAGAATCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000079722,ENSRNOT00000082254,ENSRNOT00000073241,ENSRNOT00000080995,ENSRNOT00000045656,ENSRNOT00000074303 2 6 6 80 1 282683406 282683543 CACCATTCCTATGGTCATGG 58 282683584 282683604 GTATCCTTTAGAACAGCCTGC 59 NA Rattus norvegicus 81 Rmdn1 ENSRNOG00000025145 ENSRNOT00000092054,ENSRNOT00000036050 3 2 2 80 5 33597812 33599198 ACCTTATGGGTATTTGGTGCT 60 33599238 33599258 GATTTGCAAACAGCACTTCAG 59 NA Rattus norvegicus 81 Ubd ENSRNOG00000000768 ENSRNOT00000079061 3 1 2 116 20 1897382 1897401 TCTTCATATCCGGACTCCAG 58 1876758 1897303 GAATGGACAACCTGAGAGC 58 NA Rattus norvegicus 81 Ift57 ENSRNOG00000001958 ENSRNOT00000002684 2 1 1 80 11 53693783 53717225 TATCGCTTGGACACAAACG 59 53693721 53693740 TTCTAGACTCCATTCCGCAG 59 NA Rattus norvegicus 81 Nckap1l ENSRNOG00000036829 ENSRNOT00000088956,ENSRNOT00000065753 3 2 2 80 7 145101838 145101966 TGGAGCTGAAGAAACTTGTG 59 145102009 145102027 CCATCAATTCTGGCTTGGT 58 NA Rattus norvegicus 81 Cel ENSRNOG00000010406 ENSRNOT00000014572 2 1 1 80 3 7139096 7139115 CCAGGATGATACCTATGGGC 60 7138796 7139054 TCATGAGACACTTGCTTCCT 59 NA Rattus norvegicus 81 Ints4 ENSRNOG00000012552 ENSRNOT00000016770 2 1 1 80 1 162476867 162476889 ATCTCTAACAATATCACCCTCCG 60 162476924 162480861 TCTAATATCCCTGGATGAATCCTC 59 NA Rattus norvegicus 81 Sstr2 ENSRNOG00000002793 ENSRNOT00000003735 3 1 1 119 10 102136554 102141639 AAAGCAAGATGTCACGATAGAC 59 102141718 102141737 AACTGCTCAGAGGTCAACTC 60 NA InUTR Rattus norvegicus 81 Nif3l1 ENSRNOG00000013446 ENSRNOT00000058667,ENSRNOT00000018014 1 2 2 80 9 65334375 65334394 CTGGACAAAGTCATGTCTGC 59 65334437 65336798 CTCCTCACCATCACACCTG 60 NA Rattus norvegicus 81 Cabp2 ENSRNOG00000018339 ENSRNOT00000071109 3 1 1 89 1 219333327 219333909 ATCACAGCAAATCAGTGGTG 59 219333961 219333979 ATCATGTCTGCCGTCTCTG 60 NA Rattus norvegicus 81 Rasl11a ENSRNOG00000000956 ENSRNOT00000001264 2 1 2 87 12 9990046 9990065 TCAAGGAGGACTCACAAGAC 59 9988108 9988425 ACAATCATTGCGCTCTTGC 60 NA Rattus norvegicus 81 Cdkn2b ENSRNOG00000006735 ENSRNOT00000008898 2 1 2 124 5 107853571 107853589 TTCCTGGACACGCTAATGG 60 107853388 107853486 TAGATAGGGCTCGCAATATCAC 60 NA Rattus norvegicus 81 St3gal4 ENSRNOG00000009850 ENSRNOT00000013243 3 1 1 80 8 36274416 36274712 ACCAGCAAATCTCACTGGA 59 36274354 36274373 TTCTCGGGAGATGGAATACC 59 NA Rattus norvegicus 81 Dnttip2 ENSRNOG00000025025 ENSRNOT00000036931 3 1 1 80 2 225863030 225863048 CAAGCATGGACCCAAAGAG 59 225863091 225865326 CAACAATGGTTCCAACCTGG 60 NA Rattus norvegicus 81 Olr1736 ENSRNOG00000061930 ENSRNOT00000075084 1 1 1 60 20 1765319 1765339 CTTGCTTCACTCTGTAATGAC 57 1765360 1765379 ATGATGGACATGATTGGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC126892.1 ENSRNOG00000057696 ENSRNOT00000082228 1 1 1 85 1 197677237 197677844 CATCATCCCTCCTCAGGTG 59 197677893 197677911 TATGCATGAAGTCCAGTGC 58 NA DesignNoJunction Rattus norvegicus 81 Pnkp ENSRNOG00000020318 ENSRNOT00000083551,ENSRNOT00000051640 1 2 2 80 1 100856291 100856309 TAGATGGGACCCTCATCAC 58 100856352 100856456 TCTCTGGGTACAGAATCCTC 58 NA Rattus norvegicus 81 RT1-M3-1 ENSRNOG00000000763 ENSRNOT00000080622 2 1 2 81 20 1814894 1815075 AGTATGAAAGCACTGAGTGTG 58 1814833 1814851 TTCCACTGTGGTACTGGTG 59 NA DesignNoJunction Rattus norvegicus 81 Katnal1 ENSRNOG00000047618 ENSRNOT00000077328,ENSRNOT00000078798,ENSRNOT00000072801 1 3 3 80 12 7530909 7530928 TGGGTATGACAAGGATCTGG 59 7530968 7531335 GCTATATCATCCCAGTGAATGC 59 NA Rattus norvegicus 81 Pola1 ENSRNOG00000013322 ENSRNOT00000075997,ENSRNOT00000018147 3 2 3 80 X 62551587 62556691 GTCATATGTTATCTGTCAGGATGG 59 62551530 62551549 TCCTGTTTCTGCAATTGCTC 59 NA Rattus norvegicus 81 RGD1564704 ENSRNOG00000031283 ENSRNOT00000044808 1 1 1 60 X 79742680 79742699 TCATCAGCCACCACTATGTC 60 79742639 79742657 ACCATCTTCTCCTTCAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1321 ENSRNOG00000055420 ENSRNOT00000085286 3 1 1 60 8 43645188 43645207 TATGTTGCCATCTGTAACCC 58 43645229 43645248 AGGAACAGACTTGGTAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr408 ENSRNOG00000047092 ENSRNOT00000045825 3 1 1 60 3 16287898 16287917 CACACCAATGTTGAATCCCT 59 16287939 16287958 CAGTGCTCCTTTCATATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dync1li2 ENSRNOG00000025791 ENSRNOT00000076742,ENSRNOT00000034472 2 2 4 160 19 753484 753502 CATACCCGCCTTAGTTGTG 58 755470 755923 CATGGACCAGCTTTCTCAC 59 NA Rattus norvegicus 81 Dync1li2 ENSRNOG00000025791 ENSRNOT00000076337 2 1 4 80 19 755465 755918 CTCCTGTGAGAAAGCTGGT 59 755958 755980 CTCTTACCTGTTGTTTCATCAGG 60 NA Rattus norvegicus 81 Exnef ENSRNOG00000014513 ENSRNOT00000019654,ENSRNOT00000083153 1 2 2 80 1 189571067 189572022 CTTGACTGTGAAGTGTGCC 59 189572065 189572084 AAGACAGTAGCCTCCTTCAG 59 NA Rattus norvegicus 81 Olr1129 ENSRNOG00000039922 ENSRNOT00000061326 1 1 1 60 8 18993157 18993176 ACACAGGATCACAGAATCAC 58 18993199 18993217 AAACAGCCACAAAGCATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbc1d7 ENSRNOG00000014019 ENSRNOT00000019089 2 1 1 80 17 23790802 23790820 AGAAAGTTGGCTTTCGTGG 59 23789948 23790758 GCTTCTCAATGTCCAACCG 59 NA Rattus norvegicus 81 Il36g ENSRNOG00000005701 ENSRNOT00000007512 2 1 1 80 3 1286899 1287753 CTGTAACTCCAGTCACTGTG 58 1287794 1287814 AATAAATGGGAGTCCCTTTGC 59 NA Rattus norvegicus 81 Pten ENSRNOG00000020723 ENSRNOT00000028143 2 1 1 93 1 251461651 251463517 TTTAACTGCAGAGTTGCACAG 60 251463570 251463590 GCCATTGGTCAAGATCTTCAC 60 NA Rattus norvegicus 81 Kcnk12 ENSRNOG00000016110 ENSRNOT00000021570 3 1 1 105 6 11374923 11493593 GTGTCGACCATAGGTTTCG 58 11374836 11374854 TGAAGAACAGGATGGTCCC 59 NA Rattus norvegicus 81 Pelo ENSRNOG00000061128 ENSRNOT00000091499 3 1 1 96 2 47267348 47267657 AAATTCCTTCAGGTACACGC 59 47267271 47267289 CTTTCGTGTCTGAAAGGCG 60 NA Rattus norvegicus 81 Fam114a1l1 ENSRNOG00000002110 ENSRNOT00000002917 1 1 1 60 9 120100916 120100937 TCCAGCTATGACTTCAAATGAG 58 120100877 120100895 GACCTCAGATTGCTCTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr272 ENSRNOG00000059313 ENSRNOT00000090059 3 1 1 60 1 172813575 172813595 CCATGTACTTCTTTCTCAGCC 59 172813615 172813635 GTGACAGAAGATGAAATGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027854.1 ENSRNOG00000057759 ENSRNOT00000089746 1 1 1 81 17 46323275 46323293 ATTCTCAGAGACCAGGTGC 59 46323337 46323358 CGTAGGTGATGTTCAGTGTC 58 NA Rattus norvegicus 81 Vps26b ENSRNOG00000047235 ENSRNOT00000072851 2 1 1 80 8 28059300 28062318 GTACAACAAATCCAAGTACCAC 58 28059241 28059261 TGCTTGATCTTGATTCTCACC 58 NA Rattus norvegicus 81 Slc46a3 ENSRNOG00000000937 ENSRNOT00000001243 3 1 1 81 12 8726489 8733012 CATTCCAGGAGGAAGTTCAG 58 8733053 8733074 GACACTAGACCAGGAATTAACC 58 NA Rattus norvegicus 81 Fsbp ENSRNOG00000015004 ENSRNOT00000020245 2 1 1 64 5 25168668 25172436 GTACAAACTTGGATGAGGCTG 59 25172462 25172480 ATGGTGATCCACCATCACC 60 NA DesignNoJunction Rattus norvegicus 81 Lef1 ENSRNOG00000010121 ENSRNOT00000013694 1 1 1 80 2 236233580 236233600 TAGCAGACATCAAGTCATCCT 59 236233642 236235825 GTGTTTGTCTGACCACCTC 58 NA Rattus norvegicus 81 Ncoa1 ENSRNOG00000004068 ENSRNOT00000091659,ENSRNOT00000068531 3 2 2 80 6 28769789 28775085 GGCATCAAGTACTGAGAAGAG 58 28769729 28769750 ATGTTGGCAGACAGTAATTCAG 59 NA Rattus norvegicus 81 Hnrnpab ENSRNOG00000003645 ENSRNOT00000033056,ENSRNOT00000004885 1 2 2 80 10 34959134 34959155 ACATTTAAAGAGGAAGACCCTG 58 34957500 34959095 CTTGATTTCACACTTGCTACC 58 NA Rattus norvegicus 81 AABR07051726.1 ENSRNOG00000046324 ENSRNOT00000075136 1 1 1 60 3 20163366 20163384 CCTGCCTATAAGCCTTGGA 59 20163405 20163426 TAATAGGCTCTGACTAGACCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc4a5 ENSRNOG00000010378 ENSRNOT00000014249,ENSRNOT00000082336 2 2 2 80 4 114973929 114976273 AACATGTCTGTGTACACCC 57 114976317 114976335 CCCATAGCTCAGACATTCC 57 NA Rattus norvegicus 81 Fads6 ENSRNOG00000021380 ENSRNOT00000029001 2 1 1 82 10 103835422 103836218 TAGCTCTTGAGCATTTGAGGA 59 103835360 103835378 CTGAGAGTAAAGGCCCAGG 60 NA Rattus norvegicus 81 Mettl8 ENSRNOG00000009382 ENSRNOT00000076202,ENSRNOT00000076771,ENSRNOT00000058524 2 3 4 132 3 57607646 57607664 ATTGCATTTGCCGTCTGAG 59 57584414 57607551 ATGTGATCCCACATGTTGTG 59 NA Rattus norvegicus 81 Mettl8 ENSRNOG00000009382 ENSRNOT00000075860 2 1 4 80 3 57260257 57267220 ATTCACCCTGACAGGATGC 60 57260195 57260215 ATCCCGAAACAATAGCATTCC 59 NA Rattus norvegicus 81 Lefty2 ENSRNOG00000003263 ENSRNOT00000004354 2 1 1 73 13 99216157 99216175 GTCACCATTGAATGGCTGC 60 99216212 99216426 GACACGAGCCTAGAATCGA 59 NA DesignRelaxed Rattus norvegicus 81 Nhp2 ENSRNOG00000049622 ENSRNOT00000073317,ENSRNOT00000090404 3 2 2 81 10 37069781 37071919 GCGAGAAAGGGATCATGGT 60 37071964 37071982 TGGTCCTCGCACATAACTG 60 NA Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000084868 1 1 6 82 1 262001412 262001430 CCAGAACATCCCAGTCCAG 60 262001190 262001366 TGCTGTCTGTGTCTGTCTC 59 NA Rattus norvegicus 81 Icam2 ENSRNOG00000025143 ENSRNOT00000035474 1 1 1 81 10 94571179 94572448 ATCAGGGTGTATGAGCCTC 59 94571116 94571134 CAATGGTGAAGGCTTCACC 59 NA Rattus norvegicus 81 Nlgn1 ENSRNOG00000032576 ENSRNOT00000041111 2 1 1 60 2 111061159 111061180 TGCTGTAGTAATGACATACTGG 58 111059909 111061139 AACTGGTTGATTTGGGTCAC 59 NA DesignNoJunction Rattus norvegicus 81 Foxo6 ENSRNOG00000032639 ENSRNOT00000050941 3 1 1 93 5 139226846 139226864 CTCGCAGATCTACGACTGG 60 139209506 139226789 CCGGATGGAGTTCTTCCAG 60 NA Rattus norvegicus 81 Phldb2 ENSRNOG00000002171 ENSRNOT00000034097,ENSRNOT00000042754 3 2 2 80 11 57480915 57481431 CTCAAGAATGCCAATAAGAGTCC 60 57481468 57481489 GGCCACCATGTAATAGATTCTG 59 NA Rattus norvegicus 81 Zfp69 ENSRNOG00000028662 ENSRNOT00000030016 2 1 1 95 5 139863012 139863671 ATCAGTGGGATATCAACTTTCC 58 139862938 139862956 GAATCCTTTGGGCCTTGAC 59 NA Rattus norvegicus 81 Nt5c ENSRNOG00000003650 ENSRNOT00000004853 3 1 1 82 10 104053266 104053288 ATGGGAGACCTCATTGATGAC 60 104053095 104053114 CAGCAGGTGAACAAGATGTG 60 NA Rattus norvegicus 81 Mipep ENSRNOG00000013876 ENSRNOT00000085785,ENSRNOT00000018845 2 2 2 80 15 41121545 41121563 GGCGTCACCTTATATGCAG 59 41121607 41123143 TTCATGAACAACAGCCAGC 59 NA Rattus norvegicus 81 Olr234 ENSRNOG00000033512 ENSRNOT00000051038 2 1 1 60 1 171274868 171274888 TTCAGCAGATACTTACAGCAC 58 171274909 171274928 TAGGAGGATTACCACACCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sbsn ENSRNOG00000021015 ENSRNOT00000028526 3 1 1 89 1 89204358 89204377 AGGAAATGAACAGGTTGCAG 59 89204429 89205736 CTTGATGAGGCCCATTCAG 58 NA Rattus norvegicus 81 Slc1a4 ENSRNOG00000005248 ENSRNOT00000007002 2 1 1 80 14 104599375 104611902 TCCTGGATTTACTCAGAAACCT 59 104597901 104597919 CCACTGTGTAACTGGTTGC 59 NA Rattus norvegicus 81 Tlr9 ENSRNOG00000048161 ENSRNOT00000074194 1 1 1 114 8 114916216 114917034 CCATCATGGTTCTCTGTCG 58 114917112 114917130 AGTTCACAGGGTAGGAAGG 58 NA InUTR Rattus norvegicus 81 Aldh3b1 ENSRNOG00000017512 ENSRNOT00000023789,ENSRNOT00000085312 2 2 2 80 1 219155225 219155245 AATTGAGTTCATCAACCGGAG 59 219152519 219155184 AACACCTGTTTGATGACCTG 58 NA Rattus norvegicus 81 Gpx5 ENSRNOG00000057180 ENSRNOT00000081408,ENSRNOT00000084180 2 2 2 105 17 45516407 45517535 TTTACCTTCTTGAAGCGCTC 59 45517603 45517621 CAAAGTTCCAGCGGATGTC 59 NA Rattus norvegicus 81 Slc35e1 ENSRNOG00000012287 ENSRNOT00000016399 1 1 1 80 16 19061512 19062291 TCTTCCTGTACAACAAGACCA 59 19062333 19062351 TTAGGTCTGACGTGGAGAC 59 NA Rattus norvegicus 81 Tmem39a ENSRNOG00000003075 ENSRNOT00000048738 1 1 1 80 11 64751069 64751092 GTCAGCTTTACCTTCTATTCAGAC 59 64743260 64751031 GCACTACCATTCCTGTTCCT 60 NA Rattus norvegicus 81 Camkk1 ENSRNOG00000018242 ENSRNOT00000025009 1 1 1 80 10 59604112 59604130 TGGTAGAGGTGACTGAGGA 59 59604172 59604615 TAGACTTGACCAGGATCACAG 59 NA Rattus norvegicus 81 Msh4 ENSRNOG00000010431 ENSRNOT00000014106 2 1 1 80 2 260070014 260070034 GGCACTAATACAGAAGAAGGG 58 260064704 260069975 GAAGAGTGTAAATGCCTTTGTG 58 NA Rattus norvegicus 81 Tspear ENSRNOG00000001219 ENSRNOT00000038419 2 1 1 80 20 11528130 11528149 ACTCTGATCTTGGCTGTGTC 60 11526872 11528088 AACATCCGCCATTATGTCCA 60 NA Rattus norvegicus 81 Nkd2 ENSRNOG00000016103 ENSRNOT00000021898 3 1 1 81 1 32080132 32080601 TCTGCCTATAGCAGGAAGC 59 32080646 32080664 GCTCTGTGTTCTCATCCAC 58 NA Rattus norvegicus 81 Calb1 ENSRNOG00000007456 ENSRNOT00000010845 3 1 1 80 5 29556355 29556375 TAAGGACCTGCTAGAGAAAGC 59 29556417 29558269 AACAGCTTCAGCATGAGGT 60 NA Rattus norvegicus 81 Hint1-ps1 ENSRNOG00000000622 ENSRNOT00000000772 2 1 1 103 10 40208358 40208376 TCATCCGCAAAGAAATCCC 58 40211357 40211376 GGGTATCACCAGAAAGTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Mgat5b ENSRNOG00000024954 ENSRNOT00000064410 1 1 1 80 10 105922030 105922048 CCTGCCTTTGTGAAGAACC 59 105922091 105922391 CCCTATAAAGAGCTTGGCCT 59 NA Rattus norvegicus 81 Trappc5 ENSRNOG00000001003 ENSRNOT00000001327 3 1 1 74 12 2231558 2231576 CCAAAGTTACAGCGCACTG 60 2231614 2231632 GATCTCGGGCAATAACAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_19_0291.1 ENSRNOG00000030864 ENSRNOT00000050750 2 1 1 60 19 17967969 17967987 AAGGAAGAACAGGTCCTCC 59 17968164 17968183 CTTACCTAGCAAACGCAAGG 59 NA DesignNoJunction Rattus norvegicus 81 Casp8 ENSRNOG00000012331 ENSRNOT00000016613,ENSRNOT00000084498 1 2 2 80 9 65659959 65661737 GGAAAGATGTCCTCGAGGT 59 65661780 65661799 CTCGGGTTGTCTTTATTGCT 58 NA Rattus norvegicus 81 Prr9 ENSRNOG00000012312 ENSRNOT00000016430 3 1 1 157 2 192026626 192027190 GACTCTTCAAATCATCTGAGATGTC 60 192026493 192026513 TGGACATTTATCTTGACAGGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07030494.1 ENSRNOG00000049929 ENSRNOT00000074987 2 1 1 61 10 90569383 90569401 GTTATGGCTGGGATCATCG 58 90569340 90569361 AGGGAGTTATCGCTAAGTACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC287167 ENSRNOG00000045989 ENSRNOT00000052292 3 1 1 80 10 15577933 15577952 ACAACATCAAGAAAGCCTGG 59 15577757 15577892 CAATGAACAACCTCCCTATGG 59 NA Rattus norvegicus 81 Lpxn ENSRNOG00000012611 ENSRNOT00000017109 3 1 1 80 1 229667297 229667420 TCACAGATAAAGTGCTGACAG 58 229667462 229667480 CAAACACCTCTCCACAGTG 58 NA Rattus norvegicus 81 Eif4enif1 ENSRNOG00000018475 ENSRNOT00000024993 3 1 1 80 14 83433401 83433421 TAAGGACCTACGAGACTTGAG 58 83433462 83434022 CTATCTCCAAACTCCCTCCT 58 NA Rattus norvegicus 81 Olr404 ENSRNOG00000045690 ENSRNOT00000049590 2 1 1 60 3 16117251 16117272 AGTATCTGAGTTCATCCTCCTG 59 16117292 16117311 AAAGTACATGCCTTGGTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0040.8 ENSRNOG00000056715 ENSRNOT00000086520 2 1 1 60 20 1931701 1931723 GTTCTTTGGTCTCTTCTATGCAG 60 1931743 1931761 CAGGGTGTATACGAGAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r45 ENSRNOG00000028882 ENSRNOT00000045214 2 1 1 60 1 67134463 67134484 GTTTCCAAGCAATCACAATCAG 59 67134424 67134447 GCTCTGTATTTAACCTTCATCCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563962 ENSRNOG00000045814 ENSRNOT00000073716 3 1 1 137 2 165805256 165805274 TGCAGAACGAGCTAGTGTC 60 165815082 165815100 GCTTCTTCCTCATGGAGGG 60 NA DesignNoJunction Rattus norvegicus 81 RGD1562200 ENSRNOG00000026157 ENSRNOT00000030771 2 1 1 82 X 45519548 45520199 GATGTCATGGTGTCCATGG 58 45519484 45519502 TAGATCGCCTCCATCATCC 58 NA Rattus norvegicus 81 Gpr141 ENSRNOG00000059698 ENSRNOT00000092193 2 1 1 110 17 47241539 47241558 CGAGATTATGTGCAAGTCGT 59 47241631 47262234 TAGAGCTTGCTCCATGGAC 59 NA Rattus norvegicus 81 LOC100911893 ENSRNOG00000048946 ENSRNOT00000074948 3 1 1 60 8 18037369 18037389 CCCTGAGGTATACAATCACCA 59 18037329 18037348 AGACAGAGCAGAACAAGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtf3c5 ENSRNOG00000010981 ENSRNOT00000015068 2 1 1 80 3 7147540 7148585 TAAGTACAAGCTCAAGGATTCG 58 7147481 7147500 CACAGCTGGTAGAACATCTG 58 NA Rattus norvegicus 81 AABR07065750.2 ENSRNOG00000050118 ENSRNOT00000072238 2 1 1 73 6 140102151 140102283 AAAGGTGTCCAGTGTGAGG 60 140102096 140102115 AGTTTCAGAGACCTTCCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Samd14 ENSRNOG00000004155 ENSRNOT00000005519 3 1 1 85 10 82823927 82823945 TCAAAGCTTCGAGAACCTG 58 82825752 82829051 TTGTGTAAGCTAGTATCCAGC 58 NA Rattus norvegicus 81 Lgi3 ENSRNOG00000011323 ENSRNOT00000015104 1 1 1 80 15 52222659 52222680 TACTCAACTCCAACAAGTTCAC 59 52222718 52223077 TTTCTATGAAGAGGTACTGCAG 58 NA Rattus norvegicus 81 Stard3nl ENSRNOG00000052429 ENSRNOT00000081314 2 1 1 95 17 47687950 47687968 AGTTCAGGATGCATCGGAG 60 47688025 47695300 TCTTCAGATCCTGCTTCAGAC 60 NA Rattus norvegicus 81 Tram1l1 ENSRNOG00000009835 ENSRNOT00000013030 1 1 1 60 2 228545333 228545353 TGATTGTCTCAGTGGTTACAG 58 228545373 228545393 GCATTTCCATTCCGATTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2j10 ENSRNOG00000042224 ENSRNOT00000079786,ENSRNOT00000045686 2 2 4 80 5 115086919 115086937 CCAGAAAGACTGGAACCCT 59 115084457 115086876 GTCTTGTCTCGGTACTTTGC 59 NA Rattus norvegicus 81 Itm2b ENSRNOG00000016271 ENSRNOT00000023037 1 1 1 80 15 55256799 55256819 GGCTTCTTCATTTACCGACTG 59 55255572 55256763 CTTCTGAATACCTCTAATGGTTTCC 59 NA Rattus norvegicus 81 Itm2b ENSRNOG00000016271 ENSRNOT00000023037 3 1 1 80 15 55256793 55256812 TCATTTACCGACTGTGTCAC 58 55255565 55256752 CTTCACGCTTCTGAATACCTC 59 NA Rattus norvegicus 81 Cbl ENSRNOG00000008444 ENSRNOT00000067902 3 1 1 80 8 48505188 48505207 GAACATCCTGCAGACAATCC 59 48503528 48505147 AACAAATAGAAGCCTTCCCTG 58 NA Rattus norvegicus 81 Obp1f ENSRNOG00000058697 ENSRNOT00000088538 2 1 1 80 X 45213830 45213849 GCTTACTTTCAGCACATGGA 59 45213890 45214338 ACATTCACTGTCCAACTTGAC 59 NA Rattus norvegicus 81 LOC102551235 ENSRNOG00000027393 ENSRNOT00000036231 3 1 1 60 3 3700176 3700199 TAGAATACATCTCAGACAGAAGGG 59 3700139 3700157 TCAGAAGGTGTAGACCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp263 ENSRNOG00000007678 ENSRNOT00000010442 2 1 1 80 10 12028129 12028610 GGAGAGGGCATTATCTGCT 59 12028067 12028085 TGGGTCCCAGTCATATCCT 59 NA Rattus norvegicus 81 Tmem114 ENSRNOG00000002768 ENSRNOT00000003749 1 1 1 122 10 7291424 7294984 TTTCTCTTCGGAGCCATGG 60 7295070 7295088 TATGTCCACCTGATCCAGC 59 NA Rattus norvegicus 81 AC094001.1 ENSRNOG00000054026 ENSRNOT00000028126 1 1 1 60 1 216953442 216953463 CATGTTTCTCTTAGTCTTTGGG 57 216953403 216953421 CTTGCAGAATTTGGAGGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035375.1 ENSRNOG00000046761 ENSRNOT00000071795 1 1 1 136 12 11808211 11808886 GAAATGACTGTTCAGATGGAGAG 59 11808097 11808115 GGTCTCAGGAACTTGAGCA 59 NA Rattus norvegicus 81 Mrps15 ENSRNOG00000008279 ENSRNOT00000011565 3 1 1 81 5 144056111 144056129 CAAGATGATGAACCAGCCT 58 144056172 144057726 CAACATCATCAACCTTCTCCA 58 NA Rattus norvegicus 81 Mycn ENSRNOG00000051372 ENSRNOT00000084924 3 1 1 96 6 38224075 38226147 GCGACTCAGATGATGAAGAC 59 38223998 38224017 GCCTTGTTGTTAGAGGAGGA 60 NA Rattus norvegicus 81 Nupr1 ENSRNOG00000050922 ENSRNOT00000072875 3 1 1 112 1 198044606 198044965 ATCTTATGTCGTCGGTGGAG 59 198044513 198044531 TCTGGAACTTGGTCAGCAG 60 NA Rattus norvegicus 81 Paqr6 ENSRNOG00000026059 ENSRNOT00000036143 2 1 1 84 2 187738935 187738954 TTAGACTGTGTCCTCAGCTC 59 187739001 187739100 ACAGGAAGTACCAAGTGGG 59 NA Rattus norvegicus 81 Stt3b ENSRNOG00000011922 ENSRNOT00000077792,ENSRNOT00000017243 1 2 2 84 8 123310275 123311052 CCACATTGCACTGGTAGGA 60 123310209 123310233 CACATAATCAACATCAAGAGACCTC 60 NA Rattus norvegicus 81 LOC100909856 ENSRNOG00000025724 ENSRNOT00000031928 1 1 1 80 5 142820320 142820338 GTCACATGAAAGGTCACGA 58 142820379 142825473 AGTGATTTGTATCCTCTGATCC 58 NA Rattus norvegicus 81 Zkscan2 ENSRNOG00000024245 ENSRNOT00000020281 1 1 1 80 1 193454576 193457675 GCCATTACCTAAGAATGCTCAC 60 193454517 193454535 GTCGCCTCCTCATCTACAG 59 NA Rattus norvegicus 81 Pglyrp3b ENSRNOG00000045617 ENSRNOT00000066410 1 1 1 80 2 191912361 191914613 TGTGACATTGCATATCACTTCC 59 191914652 191914672 GTGAGAGCCTTCAATAGTCCA 60 NA Rattus norvegicus 81 Rn60_20_0024.1 ENSRNOG00000026374 ENSRNOT00000030972 2 1 1 60 20 2332208 2332226 CTACAAGCCTGTGAAGCAC 59 2332249 2332268 GATAAATTGGGAGGAGTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psma3 ENSRNOG00000007851 ENSRNOT00000010753 3 1 2 107 6 93440014 93440032 GAACTAGAGCTCAGCTGGG 60 93440427 93441798 TTCCTTCAAAGATTCCTTGGC 59 NA Rattus norvegicus 81 Haao ENSRNOG00000031263 ENSRNOT00000045996 1 1 1 80 6 7045691 7045709 TAAGGTGACAATGGGAGGA 58 7045525 7045647 CACATGTACGAGAACCCAG 58 NA Rattus norvegicus 81 Mboat1 ENSRNOG00000027125 ENSRNOT00000036978 3 1 1 80 17 36121314 36177187 CGCTAGATCAGGTTAACTTTGTG 60 36121256 36121279 CAGGACGTAAGTAGATTCTAAACC 59 NA Rattus norvegicus 81 AABR07071891.1 ENSRNOG00000049295 ENSRNOT00000032991 3 1 1 80 1 84613495 84613514 ATGCTACTCAGAAGGTCCTC 59 84613557 84615098 AAAGGCAACTTCCTACCAC 58 NA Rattus norvegicus 81 Prpf8 ENSRNOG00000003495 ENSRNOT00000081813,ENSRNOT00000005016 3 2 2 80 10 63642296 63642460 GACTCAAGGAAGCTTATAGTGTG 59 63642497 63642518 CATAGGCTTGTTCAATCAGACC 60 NA Rattus norvegicus 81 Hsh2d ENSRNOG00000023614 ENSRNOT00000038494 2 1 1 80 16 19339477 19339496 GGTTCAGGATAATGGAAGGC 58 19337988 19339434 CCTTCAGAAGCCTCTTCAG 58 NA Rattus norvegicus 81 Hsh2d ENSRNOG00000023614 ENSRNOT00000038494 3 1 1 80 16 19339478 19339497 TGGTTCAGGATAATGGAAGG 57 19337989 19339435 CTTCAGAAGCCTCTTCAGG 58 NA Rattus norvegicus 81 AABR07039435.1 ENSRNOG00000046897 ENSRNOT00000045534 3 1 1 80 X 76696295 76697036 TCGAGATCAAAGAGGAAACC 57 76696234 76696254 ATTTACATTCTCATCCGTGGG 58 NA Rattus norvegicus 81 Zbtb9 ENSRNOG00000026799 ENSRNOT00000000574 1 1 1 89 20 5566663 5566897 AAGGTGTGACCCTAGTCTC 58 5566950 5566968 AAAGGAGTCGAAGCATCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ccdc65 ENSRNOG00000058916 ENSRNOT00000090760 2 1 1 80 7 140395148 140395169 GAACTTAGTCAAACTCACCCTG 59 140395209 140396436 AGGATCTTCTCACCCTTCTC 58 NA Rattus norvegicus 81 Nxf1 ENSRNOG00000019069 ENSRNOT00000026033 1 1 1 80 1 224964389 224964407 AAGCTTGATGACATGTCCA 57 224964450 224964806 GGACTTCAATTCGTTTCCAG 57 NA Rattus norvegicus 81 LOC100360638 ENSRNOG00000018936 ENSRNOT00000051665 1 1 2 136 1 84893942 84894773 TGGTTCAGTGACATTTAGGGA 59 84891942 84893844 AACTTCCCACCACTGTGAC 60 NA Rattus norvegicus 81 Cdh20 ENSRNOG00000014556 ENSRNOT00000019907 3 1 1 80 13 24874272 24879298 ACTGTGAAGAAGCCTTTGAG 58 24879340 24879359 CATCTCTACGTGAGGATTGG 58 NA Rattus norvegicus 81 Rpl36al ENSRNOG00000031315 ENSRNOT00000043171 3 1 1 60 10 57251325 57251344 CAGTACAAGAAGGGCAAGGA 60 57251367 57251385 GTTTCCTGTCATAACGCCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxl3-ps1 ENSRNOG00000012168 ENSRNOT00000090699,ENSRNOT00000035839 2 2 2 80 17 8516244 8516693 GTCAGCTTTAAGGTTGATAGCAG 60 8516186 8516208 GATAGAGCAATTTACCAGCTGAG 59 NA Rattus norvegicus 81 Clpx ENSRNOG00000030225 ENSRNOT00000048302 1 1 1 80 8 70836225 70836245 CTTGTGCAGATACTGACTGAG 59 70836284 70837434 CAATTCACACTTATCCATGCTG 58 NA Rattus norvegicus 81 Higd1b ENSRNOG00000002814 ENSRNOT00000003765 1 1 1 67 10 90930962 90930980 TTCATACCAGAGTGGCAGC 60 90931011 90931517 CATTGTATACACGGCACCA 58 NA DesignNoJunction Rattus norvegicus 81 Trim80 ENSRNOG00000028812 ENSRNOT00000065292 3 1 1 80 10 103999249 104003457 GAAAGACACTACTCCAGAATTACTG 59 104003492 104003513 TTTCCTTGAACAAGAACAGCTC 60 NA Rattus norvegicus 81 Mrpl32 ENSRNOG00000015989 ENSRNOT00000021433 3 1 1 61 17 53104221 53104240 GAGAAGAAACCCTCACAAGC 59 53104988 53105006 CACATTCAGGGCAAATGTC 57 NA DesignNoJunction Rattus norvegicus 81 Mdfic ENSRNOG00000053787 ENSRNOT00000082453 1 1 1 80 4 42222617 42252587 ACTTGTCAGAACCCAACCT 59 42252631 42252649 ATCTTGCTGGTTTCCTCCT 59 NA Rattus norvegicus 81 Wdfy2 ENSRNOG00000010042 ENSRNOT00000066864,ENSRNOT00000080537 2 2 2 80 15 46116197 46116217 CGATCACTCTGTCATCATGTG 59 46116258 46121903 TGGACTTTGTCATTGTGTCC 59 NA Rattus norvegicus 81 Emc3 ENSRNOG00000009934 ENSRNOT00000013488 1 1 1 80 4 145476520 145477027 GGCTTTGTCACAACTAAGGTC 60 145476460 145476478 TGTGAGCAGCTCTATTCCC 59 NA Rattus norvegicus 81 Kazald1 ENSRNOG00000016058 ENSRNOT00000021553 3 1 1 152 1 264830041 264830147 CATATCTCTGTGCAGTTTAGGG 59 264830260 264830278 TACTGTGAGGGTAGCAGAG 58 NA Rattus norvegicus 81 Ggt1 ENSRNOG00000047697 ENSRNOT00000074533 1 1 1 80 20 14021174 14021371 CATCAACCTCTACTTTGGCT 58 14021113 14021132 GAGCTGAAGTCATCCATCTC 58 NA Rattus norvegicus 81 AC106663.5 ENSRNOG00000061438 ENSRNOT00000067997 1 1 1 60 14 86751580 86751600 GAAGAACTTAAATTGGCCACG 58 86751622 86751640 TGTACACATTCCGGATGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cav1 ENSRNOG00000056836 ENSRNOT00000078250 1 1 1 92 4 44598815 44598833 GAGAAGCAAGTGTACGACG 59 44598887 44628001 AAAGTCAATCTTGACCACGTC 59 NA Rattus norvegicus 81 Scaf8 ENSRNOG00000016919 ENSRNOT00000065733,ENSRNOT00000083425 1 2 2 80 1 44061671 44061692 ATCGCAGATAACAAACACAGAC 59 44061733 44065718 AGTTGCTGAAGCTGTTGAC 59 NA Rattus norvegicus 81 Slc6a16 ENSRNOG00000025220 ENSRNOT00000033882 2 1 1 80 1 101257005 101257265 CAGAAGCAGTTTATGAGGATTGAG 60 101257302 101257322 CCCGGGTAATAGTGAGATGAC 60 NA Rattus norvegicus 81 Gria1 ENSRNOG00000045816 ENSRNOT00000081136,ENSRNOT00000073148,ENSRNOT00000071615 3 3 3 80 10 42668703 42673049 TGGTCTATGGAAGAGCAGAC 59 42673092 42673110 GCTTGGAGAAGTCGATGAC 58 NA Rattus norvegicus 81 Fgf8 ENSRNOG00000017524 ENSRNOT00000023558 1 1 1 106 1 265497713 265497731 GACCTACCAGCTCTACAGC 59 265494408 265497643 CAATGAGCTTTGCGAAGGG 60 NA Rattus norvegicus 81 Dexi ENSRNOG00000002635 ENSRNOT00000003544 3 1 1 217 10 5199874 5199895 ACGTCTTCGATGGATATTTGGA 60 5211365 5211383 CTCACTTCTCCTGGCAGAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Top2b ENSRNOG00000048795 ENSRNOT00000076520,ENSRNOT00000075125 3 2 5 80 15 10263135 10263915 AAACAGCCAGCAAGAAACC 59 10263073 10263093 CAGAAGTGAAGTCTGAAGGGA 60 NA Rattus norvegicus 81 Fam101b ENSRNOG00000006674 ENSRNOT00000008982 3 1 1 116 10 64197031 64199660 GGAAATAAAGTATACCTCCTCAGTC 59 64196939 64196958 GGGATACAGGTGACTGTCTG 60 NA Rattus norvegicus 81 Sec22a ENSRNOG00000043069 ENSRNOT00000063795 3 1 1 98 11 68653704 68672873 TAAGATTTCTTCTGCCCACC 58 68672931 68672952 CGAATTAAATTCAGAGCTCCAC 58 NA Rattus norvegicus 81 Egf ENSRNOG00000053979 ENSRNOT00000089504 1 1 1 80 2 68877595 68877615 TTATGTACCAGACGATGACAG 57 68877656 68882301 TCATCTTCATAGTTCAGCCC 57 NA Rattus norvegicus 81 Notch3 ENSRNOG00000004346 ENSRNOT00000037456 2 1 1 80 7 14151986 14153173 AGGGTGTCTTCCAGATTCTC 59 14151923 14151941 GGATCAATGCAGTAGAGCC 58 NA Rattus norvegicus 81 Als2 ENSRNOG00000023280 ENSRNOT00000088729,ENSRNOT00000035209 1 2 2 80 9 65994792 65997239 CTCAGTCTGGAACATTTGGG 59 65994731 65994750 GTAACACAACTTGCTGAACC 58 NA Rattus norvegicus 81 Fam57a ENSRNOG00000007722 ENSRNOT00000010168 2 1 1 80 10 64363641 64365381 CTATTTCACAGAAGCTCCGAG 59 64365421 64365441 CAAACGGAGTACTCAGTTCTG 59 NA Rattus norvegicus 81 Olr765 ENSRNOG00000046942 ENSRNOT00000040298 2 1 1 60 3 102723944 102723964 TAGGGTACTCAAACTTGCCTG 60 102723984 102724004 GTTGGCAATAACCATGATGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpalpp1 ENSRNOG00000001037 ENSRNOT00000001371 3 1 1 80 15 58162568 58164838 CAACTCAGAGGAAGCAGAG 58 58162506 58162526 ACACTATAGTCAACTGGTCCT 58 NA Rattus norvegicus 81 Mesdc1 ENSRNOG00000012349 ENSRNOT00000016455 1 1 1 60 1 146028485 146028503 TCAGGCTTTAAGGGAAAGG 57 146028443 146028463 CACAGAATTGGAATTCACTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif1a ENSRNOG00000031421 ENSRNOT00000041237 1 1 2 80 18 40586487 40587353 GCTGCATTTGTCACTACTG 57 40596079 40596097 GAGTCCTGGCTTCTAACAG 57 NA InUTR Rattus norvegicus 81 Brms1l ENSRNOG00000008249 ENSRNOT00000076346 2 1 3 81 6 76701662 76702742 CAACAATTAGGAAGGCAATGG 58 76702783 76702803 ACAGAATAGGTCCCAATTCAC 58 NA Rattus norvegicus 81 AABR07043702.1 ENSRNOG00000029323 ENSRNOT00000038605 1 1 1 80 19 36181028 36182070 TAACTTCTATAGCAACCTGCAC 58 36182111 36182129 TCCTGCTTAAAGGTGACCA 59 NA Rattus norvegicus 81 Sstr5 ENSRNOG00000018834 ENSRNOT00000080944 1 1 2 89 10 14847948 14848769 AAGATGAAGACAAGAGTGGG 57 14847878 14847896 TTCAAATCCTGCTGGTCTG 58 NA Rattus norvegicus 81 Tgs1 ENSRNOG00000008156 ENSRNOT00000010783 1 1 1 80 5 16413542 16413563 AATGCTGCTCTTCATTGAAGAC 60 16413602 16417301 TTCCGATCCTCTACAAATGCT 59 NA Rattus norvegicus 81 Adcy2 ENSRNOG00000032150 ENSRNOT00000047627 3 1 1 80 1 37596493 37596512 ACACCATTCTACTCCACACC 60 37596554 37607361 CTTTCCAAATGCCTGGTCTC 59 NA Rattus norvegicus 81 Smim20 ENSRNOG00000051190 ENSRNOT00000091794 1 1 3 60 14 60058113 60060043 CAGGGTTGAAAGTGTGGTC 59 60058071 60058089 CATCAGACTTGCTGACAGC 59 NA DesignNoJunction Rattus norvegicus 81 Icoslg ENSRNOG00000023109 ENSRNOT00000038547 2 1 1 80 20 11335662 11335683 GGATGTTATCTGCTGTGTAGAG 59 11334150 11335623 CTTCCAGTGAAACTATCTGCC 59 NA Rattus norvegicus 81 Ace ENSRNOG00000007467 ENSRNOT00000010627 2 1 2 80 10 94179759 94179780 TAGACATGGAGACGACTTACAG 59 94179821 94181916 TTGTCAGATCAGGCTCCAG 59 NA Rattus norvegicus 81 Cdc27 ENSRNOG00000005904 ENSRNOT00000007963 1 1 1 80 10 92561991 92562010 AATGCATTTCCAGAAAGCAC 58 92559139 92561948 AGTGCATGCTGAACTACTC 58 NA Rattus norvegicus 81 RGD1309779 ENSRNOG00000008340 ENSRNOT00000066106 2 1 1 81 8 68308522 68312548 GGTCATCAACATGGGTATTCC 59 68308461 68308481 GGTATGAACAGTCTCTGTGAC 58 NA Rattus norvegicus 81 Ift88 ENSRNOG00000009278 ENSRNOT00000076839,ENSRNOT00000012988 2 2 2 80 15 37744079 37744101 TTGAGAAGAAGGACAGTAGAGTG 60 37744141 37745669 GGGCAAATTCGTTCTCCAG 59 NA Rattus norvegicus 81 Inhba ENSRNOG00000014320 ENSRNOT00000019272 1 1 1 147 17 51909782 51912375 ACCCGAAAGAGAATTTGCTG 59 51909654 51909672 AATCCTCTCAGCCAAAGCA 59 NA InUTR Rattus norvegicus 81 Ugt2b15 ENSRNOG00000046540 ENSRNOT00000063915,ENSRNOT00000034784 1 2 4 80 14 22378287 22378308 CCCAACATTACCAAATGTTGAC 59 22378347 22379770 AAATCTTCCATATCCTTGGGC 58 NA Rattus norvegicus 81 Itgb1bp1 ENSRNOG00000059402 ENSRNOT00000092192 1 1 1 80 6 43354544 43356921 ACAAAGAGCAAGTCTGTGG 58 43354482 43354500 AGTGGAGTCTGTATCGAGG 58 NA Rattus norvegicus 81 Olr244 ENSRNOG00000045879 ENSRNOT00000055175 1 1 1 60 1 172214930 172214948 TTATGTGATGCCCAAGTCC 58 172214888 172214906 GTAGAACACAGACACCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Faim3 ENSRNOG00000004441 ENSRNOT00000038822 1 1 1 80 13 47611281 47612097 GGATTCATAGACAAAGTCACCAC 60 47612136 47612155 TACTGAAGTGTTGGTGGAGG 59 NA Rattus norvegicus 81 Hcar1 ENSRNOG00000026661 ENSRNOT00000032274 2 1 1 60 12 38145923 38145941 CTACTTCCTCTGGACGGTG 59 38145964 38145983 ATGGAGAGCTATGTGGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smad3 ENSRNOG00000008620 ENSRNOT00000039730 2 1 1 80 8 68575404 68575422 GCTGTCTACCAGTTGACTC 58 68573201 68575360 TGTCTGTCTCCTGTACTCG 58 NA Rattus norvegicus 81 Tmem55a ENSRNOG00000006697 ENSRNOT00000009375 3 1 1 80 5 28439865 28441407 GGGTTAACTGTTGGCACAC 59 28441448 28441469 ACCTAACAGATAAGCAATTGCC 59 NA Rattus norvegicus 81 Fam216b ENSRNOG00000021943 ENSRNOT00000038579 3 1 1 80 15 60287319 60287340 ATCAAAGTGTTCCACGAATACC 59 60285575 60287283 CTTGATTTAGGTCCTTCAGTAACG 60 NA Rattus norvegicus 81 LOC688553 ENSRNOG00000037632 ENSRNOT00000035922 1 1 1 80 14 89260970 89260988 CCCTTTGACTTTGACAGGA 57 89261032 89266149 TGGCAGTTTCACCTTTCTC 58 NA Rattus norvegicus 81 Rn60_5_0814.16 ENSRNOG00000051050 ENSRNOT00000076648 1 1 1 60 5 77798544 77798564 CCTAGTCTCTAAGTTGGATGG 57 77798504 77798523 GTTCTTATTCACCCTCCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0814.16 ENSRNOG00000051050 ENSRNOT00000076648 3 1 1 60 5 77798543 77798564 CCTAGTCTCTAAGTTGGATGGA 59 77798504 77798523 GTTCTTATTCACCCTCCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dmtn ENSRNOG00000012273 ENSRNOT00000067776,ENSRNOT00000016555 2 2 2 80 15 52302680 52302702 GAAGATGATGACTCTGAAGAGGA 60 52301686 52302645 CAAGTTGGAAGTAACCTTACTGAG 60 NA Rattus norvegicus 81 Hmga2 ENSRNOG00000042460 ENSRNOT00000065137 1 1 1 93 7 65261912 65261930 AAAGCAGAGACCATTGGAG 57 65160042 65171784 TCTCTTCAGTCTCCTGAGC 58 NA Rattus norvegicus 81 Kif23 ENSRNOG00000014080 ENSRNOT00000091755,ENSRNOT00000037028 1 2 2 80 8 66868640 66868844 AGAATCGCCAACTGGTAGTC 60 66868579 66868599 GTCCATTCAGACTCTGTACCA 59 NA Rattus norvegicus 81 Exoc3l1 ENSRNOG00000015641 ENSRNOT00000021015 2 1 1 80 19 37248644 37249747 ATTACAAGCAGTACCAGCTG 58 37248583 37248601 AGGTTCACATATGCCTCCA 58 NA Rattus norvegicus 81 Rad1 ENSRNOG00000018063 ENSRNOT00000024557 2 1 1 80 2 60463858 60466169 CTACACCAGGGACTTTAACTG 58 60466205 60466229 CTCCTTCTTCTAGAAATAGCATCAG 59 NA Rattus norvegicus 81 Taldo1 ENSRNOG00000018367 ENSRNOT00000024863 1 1 1 85 1 214385114 214385132 AAATGGCTGTGGAGAAGCT 60 214385180 214385692 CATTCGTTCTGTGAGCATCC 59 NA Rattus norvegicus 81 Foxa2 ENSRNOG00000013133 ENSRNOT00000017742 1 1 1 98 3 142383469 142384460 GAGTTAAAGTATGCTGGGAGC 59 142385529 142385547 TTGCTCACGGAAGAGTAGC 60 NA InUTR Rattus norvegicus 81 Pprc1 ENSRNOG00000018561 ENSRNOT00000025221 2 1 1 81 1 265825097 265825115 AGCTGAAGCAGAGGTTCTC 59 265825158 265825606 AAACCATAGTTGTCACCTTGG 59 NA Rattus norvegicus 81 Cd86 ENSRNOG00000038835 ENSRNOT00000003129,ENSRNOT00000078936 3 2 2 81 11 67107554 67107572 TCTCTTTCTGCTGGTCGTC 60 67107617 67117870 AGTCTTTCTGCTGGGTCTG 59 NA Rattus norvegicus 81 Inha ENSRNOG00000020097 ENSRNOT00000027227 2 1 1 121 9 82700773 82700791 GACCTCTGAACCAGAGGAG 59 82702379 82702397 TGAAGAGACCTTCCTCAGG 58 NA DesignNoJunction Rattus norvegicus 81 Abcf2 ENSRNOG00000010609 ENSRNOT00000076051,ENSRNOT00000088399,ENSRNOT00000014718 1 3 3 80 4 7133353 7133592 TACCATCAGCACTTACAGGA 58 7133635 7133653 CTTGATCTCTGGGTAGCAC 57 NA Rattus norvegicus 81 Pdlim2 ENSRNOG00000008543 ENSRNOT00000011663 2 1 1 97 15 51853822 51853841 GTTGACTGTGAATGTGGTGG 60 51853054 51853762 TCTCTGTGACCTTCGTCAC 59 NA Rattus norvegicus 81 Tagap ENSRNOG00000018915 ENSRNOT00000025580 3 1 1 81 1 47500224 47500242 TCGCTGTTTGATCAACCCT 60 47499635 47500179 GGATGGTGAGGATGTCCTG 60 NA Rattus norvegicus 81 Olr1305 ENSRNOG00000039238 ENSRNOT00000060094 1 1 1 60 8 43249172 43249190 GCAGATCCAAAGCCTTCAG 59 43249130 43249148 CCAAAGAAGACCGCAACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ormdl1 ENSRNOG00000042961 ENSRNOT00000065581 2 1 1 142 9 53116485 53116504 TGTATTCTTGCTGGTGAGGT 59 53111414 53116380 ATGGGTTGTCTTCTTCCCG 60 NA Rattus norvegicus 81 Wfdc15a ENSRNOG00000053099 ENSRNOT00000090458 2 1 1 80 3 160591661 160591815 AGGAAAGGAGTTACACCCA 58 160591599 160591619 GTTGCATAAAGGTAACAGGAC 57 NA Rattus norvegicus 81 Wfdc15a ENSRNOG00000053099 ENSRNOT00000090458 3 1 1 80 3 160591852 160591871 TACAGTTCACAACAACCACC 58 160591655 160591810 CTTGTTTGGGTGTAACTCCT 58 NA Rattus norvegicus 81 Endod1 ENSRNOG00000024757 ENSRNOT00000033969 3 1 1 60 8 12901411 12901429 TGATAAACGGTGTTGCGAG 59 12901369 12901387 ACGAGGTATGAGACGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fdxr ENSRNOG00000058497 ENSRNOT00000085636 1 1 1 80 10 103822203 103822223 ATCTATGAGAAGCAGCTCGTC 60 103821951 103822167 GATGACATTCTTTACTTCAGGATGG 60 NA Rattus norvegicus 81 Cnot8 ENSRNOG00000002630 ENSRNOT00000089217,ENSRNOT00000003555 1 2 2 80 10 43542836 43542854 CCAGCAATCTTGAGGAGGA 59 43542898 43544547 GAAACTCTGTGTCCATGGC 59 NA Rattus norvegicus 81 Gnl2 ENSRNOG00000009430 ENSRNOT00000012702 1 1 1 80 5 143033499 143033518 GCAGTATCAGTCAACTGTGG 59 143033558 143035297 ATCACACGAGTATTTCCAAACC 59 NA Rattus norvegicus 81 AABR07035107.1 ENSRNOG00000000891 ENSRNOT00000035992 3 1 1 81 12 4738313 4740791 AGAAGACACGGAAGACCTG 59 4740836 4740854 GATGTGCAAAGGCTTCACC 60 NA Rattus norvegicus 81 RGD1559578 ENSRNOG00000024233 ENSRNOT00000037415 3 1 1 81 10 98097887 98112422 AAAGATATGCAAGGAGCGAG 58 98097825 98097844 TTCGGAAGCTCATTGTTGTC 59 NA Rattus norvegicus 81 Olr190 ENSRNOG00000017357 ENSRNOT00000023307 2 1 1 60 1 169966777 169966798 CACAGTCAACCGTCTTTATCAG 59 169966817 169966837 AATTAGGTCAGATCCCAGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hmox2 ENSRNOG00000003773 ENSRNOT00000077164,ENSRNOT00000005031 3 2 2 82 10 10991804 10991825 CCTGAGTATGAAGACCAAAGAG 58 10991066 10991763 CCAGTTCACTGAATATCTGCA 58 NA Rattus norvegicus 81 Aurka ENSRNOG00000004479 ENSRNOT00000055102 2 1 1 80 3 170368200 170370903 ACAGCTACCTACATCACGG 59 170368138 170368156 TGGCTTGATGTCTCTGTGG 60 NA Rattus norvegicus 81 Kcnn1 ENSRNOG00000029264 ENSRNOT00000080467,ENSRNOT00000044291 2 2 2 80 16 20339606 20339624 CTGTGCTGTTGGTCTTCAG 59 20339664 20341729 GTTTATCATGGTACCTCTCACAC 59 NA Rattus norvegicus 81 Rn60_14_0474.1 ENSRNOG00000033251 ENSRNOT00000050454,ENSRNOT00000076657 3 2 3 60 14 47202532 47202552 GGTTCAGACTTTGTTTCAGGA 59 47202492 47202510 GGCCTGGTAAGTGTTAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bin2a ENSRNOG00000032461 ENSRNOT00000037757 3 1 1 80 8 27936830 27937528 CTTCATACAAGTAAAGGACTGGG 59 27936772 27936792 GGGCCAATATTCCAATATCGT 58 NA Rattus norvegicus 81 LOC102551819 ENSRNOG00000025970 ENSRNOT00000006672 2 1 1 123 9 84550608 84550630 GCCAAAGATGAGACCAGAC 58 84550717 84550735 TAGTTCTTCCTGCTGGCTC 59 NA Rattus norvegicus 81 Zfp862 ENSRNOG00000024795 ENSRNOT00000048576 3 1 1 80 4 78140547 78140565 AGGAAGAATGGATGCTCCT 58 78140608 78142339 CAGTTGGTCCTAGAGATGCT 59 NA Rattus norvegicus 81 Vdr ENSRNOG00000054420 ENSRNOT00000082429 2 1 1 80 7 139346982 139354198 GGATTCAGGGATCTCACCTC 59 139346921 139346941 GTTGGAGCGTAACATGATCAC 60 NA Rattus norvegicus 81 Wdr64 ENSRNOG00000038083 ENSRNOT00000065706 2 1 1 80 13 93803994 93804012 GAATTTGCCATGCCAAGAG 58 93804054 93815993 TTTATCATCTCCTCCAGTGAC 57 NA Rattus norvegicus 81 Ttc32 ENSRNOG00000049088 ENSRNOT00000073663 3 1 1 105 6 34155201 34159855 CACAGGAGCAAATGTAGCC 59 34159924 34159942 ATGTGTAGTCGTCCATGGC 60 NA Rattus norvegicus 81 Idi1 ENSRNOG00000016690 ENSRNOT00000022389 2 1 1 83 17 57980734 57980752 AAATGATGCCATGGGTGTC 59 57978298 57980690 TTTAGATCAACCTCTTCCAAGG 58 NA Rattus norvegicus 81 RGD1562747 ENSRNOG00000037352 ENSRNOT00000077290,ENSRNOT00000056518 3 2 2 90 8 69486724 69487440 GGTAATAGCTGGACTTGTTGAC 59 69487490 69487509 TGCTTGAGTTTCCAGTTCCA 60 NA Rattus norvegicus 81 Olr1462 ENSRNOG00000022244 ENSRNOT00000035285 3 1 1 60 10 45922965 45922983 TCTATAATCACGCCCACCC 59 45922923 45922942 CCTTCACGTCCTTATTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kiss1 ENSRNOG00000047481 ENSRNOT00000076506,ENSRNOT00000077054 1 2 2 142 13 50532091 50532109 TCCAGAATGATCTCGCTGG 59 50529857 50529875 GCATTAACGAGTTCCTGGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1560860 ENSRNOG00000050332 ENSRNOT00000072723 1 1 1 80 17 57508112 57511993 TAAGACTCGAGGGAGAAGC 58 57508050 57508068 TCTGGGTTAGGAAGGAAGC 59 NA Rattus norvegicus 81 Tas1r1 ENSRNOG00000009708 ENSRNOT00000013385 2 1 1 80 5 169201476 169204571 TTTCTCAACATGAGTGAGCT 57 169201415 169201433 GAAGCAAGTAGTGCTCTCC 58 NA Rattus norvegicus 81 Xpo7 ENSRNOG00000013288 ENSRNOT00000087450,ENSRNOT00000018440 2 2 2 80 15 52362883 52364035 GACTCACTGCACTTGACAC 59 52362821 52362842 ACTGTTTGAAGAGATACGTCAC 59 NA Rattus norvegicus 81 Lrrc26 ENSRNOG00000011457 ENSRNOT00000015242 3 1 1 82 3 2507223 2507318 GTCCCACTTCAGAAACTGAG 58 2507363 2507381 GTTGTCCGGAAAGTCTGTC 59 NA Rattus norvegicus 81 Irgm ENSRNOG00000031138 ENSRNOT00000045545 1 1 1 81 10 34218917 34221542 TGGATCAGGGTTTGAGGAG 59 34218854 34218872 AGCAAGAAGGTCCTGTGTC 60 NA InUTR Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000081304 1 1 7 60 20 2516016 2516034 CAGCTTCTGGAGGTAGAGG 59 2516054 2516076 TGTAGTCTTAGATGGTCTTAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC129162.1 ENSRNOG00000014180 ENSRNOT00000019177 1 1 1 80 9 15310119 15310140 ATATCAGCCAAGCTTCAAACTG 59 15310180 15310832 AGTAGCGTTCATCACTGTCC 60 NA Rattus norvegicus 81 Bpifb5 ENSRNOG00000025238 ENSRNOT00000034798 1 1 1 80 3 149711367 149711795 ACACATCATTCTTCCTCCTG 57 149711838 149711856 GCTCCTTCTGTGAACTCTG 58 NA Rattus norvegicus 81 Bles03 ENSRNOG00000020551 ENSRNOT00000027869 3 1 1 126 1 220806792 220807468 AGGATGGAACCAAATGAAGAG 58 220807556 220807574 CATCAAATACCAGCCAGGG 58 NA DesignNoJunction Rattus norvegicus 81 Emp2 ENSRNOG00000002664 ENSRNOT00000003615 3 1 1 80 10 5455769 5460794 TCAACCATTGACAATGCCTG 59 5460837 5460855 ACAGTTTGTGCTGTTGGTG 59 NA Rattus norvegicus 81 Rbfox3 ENSRNOG00000003386 ENSRNOT00000089346,ENSRNOT00000004524 3 2 2 80 10 107521532 107521553 CTATGCAGCTTACAGATATGCT 58 107520426 107521495 GCATAGACTCTACCATAACTGTC 58 NA Rattus norvegicus 81 Lcn5 ENSRNOG00000058597 ENSRNOT00000061855 1 1 1 80 3 2877781 2879303 CTACTACAGTGAGGACCACTG 59 2879345 2879363 CTGGTGACCTGAAACTTCG 59 NA Rattus norvegicus 81 Rn60_2_1398.1 ENSRNOG00000051202 ENSRNOT00000076371 2 1 1 60 2 120050030 120050050 ATTCATCTGAGAATGGTGAGG 58 120050072 120050090 CTGCTCTGTGATGACTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myt1 ENSRNOG00000017346 ENSRNOT00000031448 3 1 1 80 3 177328031 177328458 CTTCACACCGGAGTTTGTC 59 177328502 177328520 CCTCCTTGTCATCCTTGGT 59 NA Rattus norvegicus 81 Rn60_20_0046.8 ENSRNOG00000058238 ENSRNOT00000082815 2 1 1 73 20 2541198 2541217 AATACACATGCCATGTGGAG 58 2541022 2541162 CATACTGGACTGAGGAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Fam98a ENSRNOG00000030328 ENSRNOT00000052131 3 1 1 81 6 21055402 21058267 GGCAACTAACAGTCCAAGTG 59 21058309 21058329 AGGATATGGGCAGTTCATCTC 60 NA Rattus norvegicus 81 Pla2r1 ENSRNOG00000008129 ENSRNOT00000079261,ENSRNOT00000011003 1 2 2 80 3 46513066 46513729 GCTGGAGATCAAATTCACTGG 59 46513006 46513027 ATCCATTCTTCCTTTCCTTCCT 59 NA Rattus norvegicus 81 Kctd13 ENSRNOG00000020010 ENSRNOT00000027129 1 1 1 89 1 198374241 198374259 GAAGTTGTCGCCACTATGC 59 198374312 198374426 TTTACCACAGGCTTGGAGG 60 NA Rattus norvegicus 81 LOC102551255 ENSRNOG00000049257 ENSRNOT00000074410 3 1 1 60 1 129613622 129613640 TACTCTGGGCACGTATCTC 58 129613663 129613682 GAGCACAAAGGGAATGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp667 ENSRNOG00000033906 ENSRNOT00000063956 2 1 1 80 1 71283060 71283080 CTTGTTGGAGAAAGGGAAAGC 60 71273094 71283022 TCATCCTTAGACCCTAATTCAGG 59 NA Rattus norvegicus 81 Olr1052 ENSRNOG00000033400 ENSRNOT00000049493 2 1 1 60 7 16432318 16432337 CAGTAACAAGATCTGCCACC 59 16432277 16432296 AATTACCAAGAAACCAGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mad1l1 ENSRNOG00000001265 ENSRNOT00000001709 1 1 1 80 12 16437548 16475125 AATCTCAGGACTCCAGAGG 58 16475168 16475187 GCTATTCTTCTCCTTCAGCG 59 NA Rattus norvegicus 81 Fasn ENSRNOG00000045636 ENSRNOT00000073321 3 1 1 80 10 109992559 109992925 AAGTCCTTGTCCAGGTACG 59 109992497 109992515 TGGAGATGGCGGAAATCAG 60 NA Rattus norvegicus 81 Bcap29 ENSRNOG00000007884 ENSRNOT00000010631 1 1 1 80 6 50889069 50889088 ACCATGAAGATTCAGTCGGA 59 50884785 50889029 TAAACGGTTCTGAAGTTCTGAG 59 NA Rattus norvegicus 81 RGD1565158 ENSRNOG00000040121 ENSRNOT00000061709 3 1 1 80 10 1834707 1834729 TCTACAGTAGAGCACTTCATCAC 60 1834765 1837699 ATAGTGTAGTGAAGTCCTGTTCC 60 NA Rattus norvegicus 81 LOC100909613 ENSRNOG00000050749 ENSRNOT00000048907 3 1 1 60 3 103463747 103463765 AATGAAGAGGGCAATGAGG 58 103463786 103463807 TCAAGAGATTTGTCTATAGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhot1 ENSRNOG00000004093 ENSRNOT00000005428 3 1 4 80 10 67573862 67573882 CTCCAGTGACCAAGTAAACTC 58 67579788 67579967 GTCTTCCCAACTCTAGAATGC 59 NA Rattus norvegicus 81 Agmat ENSRNOG00000012315 ENSRNOT00000016648 3 1 1 83 5 160318241 160318260 CCATAGATGCCTTGGATCCT 59 160318306 160320146 TCTCCAGAGCCTGACTAGG 60 NA Rattus norvegicus 81 RGD1563562 ENSRNOG00000042222 ENSRNOT00000058288 1 1 1 80 2 132275154 132276361 CTATGAGGGCATTATAGATTCAGAG 59 132275098 132275122 GGTAGATTTAGATAAGGTACTGGTG 59 NA Rattus norvegicus 81 LOC316935 ENSRNOG00000046132 ENSRNOT00000043153 1 1 1 86 16 45820 45841 AGAAGTGTAAATTCGAGAGGGA 59 44787 45773 ATTCGACATCCAGCCTGAG 60 NA Rattus norvegicus 81 Ctsh ENSRNOG00000014064 ENSRNOT00000080142,ENSRNOT00000019285 3 2 2 80 8 97451878 97454729 TCACACTCAATGATGAGGC 58 97454773 97454791 CTTCAGTCACCTCAAAGGC 59 NA Rattus norvegicus 81 Parp4 ENSRNOG00000051196 ENSRNOT00000076030 1 1 4 80 15 36905013 36905033 ACCAAGTTGGAACAAGAAGGA 60 36905069 36910632 CCATGGAATATTCCTAGAAATGAGG 59 NA Rattus norvegicus 81 Mfap3 ENSRNOG00000002443 ENSRNOT00000003361 2 1 1 61 10 42942659 42942678 CACTATGGAGAAGTCCACTG 58 42942702 42944135 TTTCCACCTCTGCTATGCA 59 NA DesignNoJunction Rattus norvegicus 81 Ccdc64b ENSRNOG00000003457 ENSRNOT00000004638 3 1 1 81 10 12986331 12986433 CAGGCAGAGAATCAGATGC 58 12986477 12986496 CTTTGTCCACTTCTTCACGA 58 NA Rattus norvegicus 81 Tdrd3 ENSRNOG00000009034 ENSRNOT00000012440 2 1 1 81 15 70801922 70801940 GGGAGGTTTCACAGAAGGA 59 70801982 70802454 GCTTTCTCATCAACCAGTTCTC 60 NA Rattus norvegicus 81 Btk ENSRNOG00000052407 ENSRNOT00000077547 1 1 1 80 X 105367565 105367587 CAAAGCAGTTCCTTCATAGAGAC 60 105365993 105366086 ATAGCACAACCCTTGAAACTC 59 NA Rattus norvegicus 81 Olr1505 ENSRNOG00000055523 ENSRNOT00000052183 3 1 1 80 10 60812200 60812352 CCTCCATCCTTAAGGTTCCT 59 60812395 60812413 GTGACACCACAGACAAGTG 59 NA Rattus norvegicus 81 RGD1562977 ENSRNOG00000034215 ENSRNOT00000046165 3 1 1 60 12 888611 888629 CACAACTCTGAACCGTTGC 60 888569 888589 CTCGAATTTAGCAGACACCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010747.1 ENSRNOG00000050241 ENSRNOT00000075623 2 1 1 81 2 150013516 150014365 TGTTGTGGCAATAGACTACAG 58 150014405 150014426 GAACTTGGTCACATAAACACAG 58 NA Rattus norvegicus 81 Mrps14 ENSRNOG00000002569 ENSRNOT00000076016 1 1 5 60 13 77945127 77945148 CCTTTAGGGACTGAGTTATGAC 58 77945169 77945187 TCATCACCAGCCATTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Armcx6 ENSRNOG00000037707 ENSRNOT00000029807 1 1 1 83 X 105567855 105567873 CTCCGTGGAGGGAATACAG 59 105567455 105567811 TGTGATTCTTGTGGTGAATCTC 59 NA InUTR Rattus norvegicus 81 Armcx6 ENSRNOG00000037707 ENSRNOT00000029807 3 1 1 128 X 105568233 105568251 CTTGGTTGGAACCTTGCTG 59 105567455 105567811 TGTGATTCTTGTGGTGAATCTC 59 NA InUTR Rattus norvegicus 81 Hoxb13 ENSRNOG00000007491 ENSRNOT00000009934 3 1 1 95 10 84032661 84033606 GAAAGCAGCATTTGCAGAG 58 84033665 84033683 CCCTTGCTATAGGGAATGC 58 NA DesignNoJunction Rattus norvegicus 81 Olr332 ENSRNOG00000024746 ENSRNOT00000035813 2 1 1 60 1 229461843 229461862 TAGTACCAGTGCTTCTCACC 59 229461885 229461903 CATGAAGAGACCAGAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ak6 ENSRNOG00000039848 ENSRNOT00000061166 3 1 2 84 2 30674224 30674329 AGATGAGGACAGGGTTGTG 59 30674376 30674395 AAAGAAATCACAACCGTGGT 58 NA Rattus norvegicus 81 Kit ENSRNOG00000002227 ENSRNOT00000003050,ENSRNOT00000090654 3 2 2 80 14 35117980 35149505 CCAGACAGGGACTTCTCAG 59 35117918 35117936 ATTAACTCTGACTGGGCCG 60 NA Rattus norvegicus 81 Epc1 ENSRNOG00000014834 ENSRNOT00000019968 1 1 1 80 17 57308226 57308247 TGATGGGATTCAAGATGAAGGA 59 57308066 57308186 CCTTGTATACTCCTGAGGCG 60 NA Rattus norvegicus 81 Plp1 ENSRNOG00000002419 ENSRNOT00000003283 3 1 1 80 X 107508262 107508280 TCCAAATGACCTTCCACCT 59 107508323 107509230 CAATCATGAAGGTGAGCAGG 59 NA Rattus norvegicus 81 Fn3krp ENSRNOG00000036660 ENSRNOT00000054916 3 1 1 91 10 110621411 110621677 CTCTGCAGTTGAAGATTCCTG 59 110621730 110621748 TTCTGCTACATTCCCTCCC 59 NA Rattus norvegicus 81 Kank4 ENSRNOG00000007779 ENSRNOT00000066139 3 1 1 80 5 117397195 117399227 GTTAACGGTGGCTATGAGAC 59 117397134 117397153 CTCACTGTCAGACAAGTCCT 59 NA Rattus norvegicus 81 Brca2 ENSRNOG00000001111 ENSRNOT00000001475 1 1 1 80 12 504334 507375 AGCACAGCAGATTTAGGAC 58 507416 507437 AGGTTCAGTATTATATGGTGGG 57 NA Rattus norvegicus 81 Atox1 ENSRNOG00000013118 ENSRNOT00000017588 3 1 1 81 10 40798826 40798845 GTTCTCTGTGGACATGACCT 60 40794223 40798782 GTTGAACTCCACTCCTCCC 60 NA Rattus norvegicus 81 LOC688812 ENSRNOG00000054096 ENSRNOT00000084052 1 1 1 86 12 4113272 4113297 CAGGACACTTTACTCAGTAATGTC 59 4113342 4113360 CCATCAACTAGTCCCAGCT 59 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000084787 3 1 11 80 6 99067065 99067086 AAGATGGCTTTACAACAGTCAC 59 99067125 99068600 TGTATGCACATCTGCTTTCTG 59 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000084724 3 1 11 60 6 99033055 99033075 TCAAAGCCATCCTGTTATCCA 60 99033095 99033115 TGCTTGAGATGTTCTTCAGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000089905,ENSRNOT00000078093,ENSRNOT00000058735 1 3 11 70 6 99152516 99152534 CTACCATTGCAACTGCTGC 60 99152568 99152586 TAGTCATCTTCGGAGGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1166.1 ENSRNOG00000031770 ENSRNOT00000041702 2 1 1 60 7 116617065 116617085 TTGTAGACATCAAGGGAATGG 58 116617025 116617043 CCGTGGTAACATGTATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tsn ENSRNOG00000002319 ENSRNOT00000068524,ENSRNOT00000044095 1 2 2 80 13 34249225 34250247 GTTTCAGGACATTCCAAAGAGG 60 34249166 34249187 GTCTTCAGGGATGTTAGATGTG 59 NA Rattus norvegicus 81 Cdk5rap3 ENSRNOG00000048747 ENSRNOT00000071719 2 1 1 80 10 84786637 84786657 GGACCTTCTTAAAGGTACCGA 59 84786242 84786595 TCCTGCCAATCCTTCATCC 60 NA Rattus norvegicus 81 LOC100910010 ENSRNOG00000048560 ENSRNOT00000075191 2 1 1 60 2 115188649 115188667 CACGATCATCCTGATCCTG 58 115188690 115188709 GCTGAGGAAGAAGTACATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem221 ENSRNOG00000018167 ENSRNOT00000024424 1 1 1 84 16 19985017 19985035 TCCTCTGAAGATGAGCCAG 59 19984342 19984969 TCTCCGTTTCCTCATCCTG 59 NA Rattus norvegicus 81 Gimap6 ENSRNOG00000033338 ENSRNOT00000049038 1 1 1 80 4 78342649 78342667 GGAAATCCACTGGAGTCCA 59 78339923 78342605 TTCTTCCATCACTGGGCTG 60 NA Rattus norvegicus 81 Deaf1 ENSRNOG00000017960 ENSRNOT00000048817 1 1 1 80 1 214312393 214313247 CAGGACATGTCCTGTCTGG 60 214312331 214312355 GTACAACTATTAGTGTGGCTTTCTC 60 NA Rattus norvegicus 81 Mfsd6l ENSRNOG00000037712 ENSRNOT00000057223 3 1 1 60 10 55139415 55139435 GCTAACCTGAGTCTACTTCCT 59 55139456 55139475 TCTTTGACACATTGACTGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pitpnm1 ENSRNOG00000018553 ENSRNOT00000025084 3 1 1 80 1 219352116 219353466 TCCATGATGTAGGTCTGCG 59 219353508 219353528 TCAGTTCAATCCACTCATCCT 59 NA Rattus norvegicus 81 Mxd4 ENSRNOG00000015033 ENSRNOT00000077060,ENSRNOT00000018515 2 2 2 80 14 81828427 81829579 CACATCAAGAAACTGGAGGAG 59 81829621 81829639 CTTTAGGAAGCGATGCTCC 58 NA Rattus norvegicus 81 LOC100362532 ENSRNOG00000050269 ENSRNOT00000075170 2 1 1 60 4 161309097 161309116 AAGTTGAGAAAGCATTGGGT 58 161309056 161309075 AGCTTGAATCCCATACTGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Evi5l ENSRNOG00000001034 ENSRNOT00000034124 1 1 2 80 12 2601532 2603250 GCATGTCCCAGTACTTCCA 59 2601470 2601488 CCTGGTAAGCCTTGAGGAC 60 NA Rattus norvegicus 81 RGD1565212 ENSRNOG00000012402 ENSRNOT00000016562 1 1 1 80 15 47337441 47338855 GAAGTCTTCCAGTTTCAGAAACC 60 47337383 47337402 CCTCAGCTCATCAAACTCCT 60 NA Rattus norvegicus 81 Nxph3 ENSRNOG00000005185 ENSRNOT00000007133 1 1 1 121 10 83330080 83332683 CTCTATCTGGTCATCTGCG 57 83329977 83329997 TTAGGTGAAATGTGACCTCTC 58 NA Rattus norvegicus 81 Igfals ENSRNOG00000015061 ENSRNOT00000020233 1 1 1 160 10 14240398 14240416 TACAAGGAACAATGGCCCT 59 14241656 14241674 ATCATGGCTGCAGGTACAG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07054370.1 ENSRNOG00000046585 ENSRNOT00000072917 2 1 1 81 3 150188564 150188585 GCAAGAAACAAGAGTTTCTGGA 60 150188626 150221624 GTTCTCTTGTCTTTGGTGCC 60 NA Rattus norvegicus 81 Fbn2 ENSRNOG00000043219 ENSRNOT00000066548 2 1 1 80 18 53103909 53105013 ACGACTGCCTAGACATAGAC 59 53103848 53103867 AGCCGATTTCATTGAAGCAC 60 NA Rattus norvegicus 81 Olr1424 ENSRNOG00000055773 ENSRNOT00000041113 1 1 1 60 10 44146283 44146303 GTGGTCATCCTCTTCTATGGT 59 44146243 44146261 TGTGGAATGAGGTAGGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307929 ENSRNOG00000011887 ENSRNOT00000016084 2 1 1 80 10 65525354 65525372 TCAGAACACAGAGGTGGAG 59 65525414 65525857 TGAATGGAGAATAGTTGGCAG 58 NA Rattus norvegicus 81 Wdr37 ENSRNOG00000016834 ENSRNOT00000022688 3 1 1 80 17 58013222 58017038 ACCAGCAAGATTGTCTCCA 59 58017081 58017100 CCTGTGGCCAATATACTCCT 59 NA Rattus norvegicus 81 AABR07000747.1 ENSRNOG00000054246 ENSRNOT00000074143 1 1 1 80 1 24981964 24982451 CATGAAGAACAGGCCACAC 59 24981902 24981920 AGAATTGACATGACCGCCT 59 NA Rattus norvegicus 81 F2 ENSRNOG00000016325 ENSRNOT00000022233 1 1 1 80 3 80534385 80534547 ACAGTAACCAGTTTGCTCC 58 80534323 80534341 GTTAGTTGTCCACGTCTCC 58 NA Rattus norvegicus 81 Jmjd7 ENSRNOG00000050072 ENSRNOT00000067181 1 1 1 80 3 111823624 111823756 CTGTATTGCTGTGAATTTCTGG 58 111823796 111823815 CTAGTGAGGGAGTCCATCAG 59 NA Rattus norvegicus 81 Jmjd7 ENSRNOG00000050072 ENSRNOT00000067181 3 1 1 81 3 111823623 111823755 GCTGTATTGCTGTGAATTTCTG 59 111823796 111823815 CTAGTGAGGGAGTCCATCAG 59 NA Rattus norvegicus 81 Elf1 ENSRNOG00000011762 ENSRNOT00000068269,ENSRNOT00000084005,ENSRNOT00000079417 1 3 3 80 15 61860423 61866336 AGGGCATTAGGACGATACAG 59 61866375 61866397 GTGTTACTGTATGTAGCTGTTGG 60 NA Rattus norvegicus 81 Grasp ENSRNOG00000007346 ENSRNOT00000088730 2 1 2 93 7 142877268 142877286 CGGCTGCTCAAATTCATCC 60 142877343 142878266 ATCTGCTGTGGGTATCTGC 60 NA InUTR Rattus norvegicus 81 Adra2b ENSRNOG00000013887 ENSRNOT00000018584 1 1 1 60 3 119806504 119806522 GTGGCTACTCTCATCATCC 57 119806546 119806564 AGAAGTACCAGTAGCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Epha1 ENSRNOG00000017525 ENSRNOT00000024037 3 1 1 80 4 71752053 71752072 AAGGTATCTGACTTTGGCCT 59 71751866 71752012 GATAGGGATCTTTCCTCCCTG 59 NA Rattus norvegicus 81 Phox2a ENSRNOG00000019706 ENSRNOT00000026702 1 1 1 138 1 166894022 166894040 AGGCTTCCAATACAGTCCC 59 166894142 166896217 GAACTTGTAGGGAACTGCC 58 NA Rattus norvegicus 81 Tbce ENSRNOG00000029667 ENSRNOT00000040743,ENSRNOT00000079433 3 2 2 80 17 53991496 53991519 GTAGAAGAGTTGAAGTTAACGGAG 59 53991558 54003854 CTAACCAGAGTCCTGCCAC 60 NA Rattus norvegicus 81 Insr ENSRNOG00000029986 ENSRNOT00000041155,ENSRNOT00000067448 2 2 2 80 12 1693578 1695548 TCTATTCTTGAGGAAGAGGCAG 59 1693519 1693537 CTGGCACTGAGGTACTCTG 60 NA Rattus norvegicus 81 AABR07029559.1 ENSRNOG00000052567 ENSRNOT00000084710 1 1 1 88 10 34016129 34016151 GCACTAAGGATAGAGAATGAACC 59 34015211 34016082 TCTAATCAGGAAGTCCGGTG 59 NA InUTR Rattus norvegicus 81 AABR07043892.1 ENSRNOG00000050326 ENSRNOT00000071024 1 1 1 142 19 46164476 46167630 GATTACGTCTTTGTCGTGC 57 46164352 46164370 AGATCCTGTCCAAATGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Hnrnpdl ENSRNOG00000002270 ENSRNOT00000079767,ENSRNOT00000003106 1 2 2 80 14 11201127 11201145 ATACACAGACGAAGAGCCA 58 11201186 11201312 ACTTTGATTTCACACTTCCCAG 59 NA Rattus norvegicus 81 Stk38l ENSRNOG00000001828 ENSRNOT00000002502,ENSRNOT00000086813 3 2 2 80 4 181079315 181079337 GAAGATGTTCTACAGCTTTCAGG 60 181079375 181080129 AATGTCATCATGTCACCTCCA 60 NA Rattus norvegicus 81 Glis2 ENSRNOG00000004766 ENSRNOT00000006680 1 1 1 81 10 11158673 11158775 AATGCCAGGTACAAGATGCT 60 11158611 11158629 AGCTCTTGTTACAGGTGGG 59 NA Rattus norvegicus 81 Tmem178b ENSRNOG00000047635 ENSRNOT00000073638 1 1 1 83 4 68012057 68049812 CTTCCTCATGGGAGGAACC 60 68049859 68049877 CGTGGGTAACGTGATAGCT 60 NA Rattus norvegicus 81 Kcnk5 ENSRNOG00000047005 ENSRNOT00000075153 1 1 1 80 15 4590330 4590350 GACTTTCAACAACTGGAACTG 58 4590392 4591307 GCCACATTACCATAACCGA 58 NA Rattus norvegicus 81 LOC100912259 ENSRNOG00000048722 ENSRNOT00000071597 1 1 1 60 4 170104619 170104640 GCTTCGGGATATTAAGGAAAGG 59 170104580 170104599 AGAAATGACCTTCTGCACGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 F8a1 ENSRNOG00000037327 ENSRNOT00000042490 3 1 1 60 1 147022472 147022491 TTTGTTATTGCAGTCCCTGG 59 147022511 147022532 CTTCTTGATGCCTTCAGTATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndst4 ENSRNOG00000009577 ENSRNOT00000012773 1 1 1 80 2 229328935 229370323 ATTTGCCCTGGAACATGGA 60 229370365 229370385 ATATGGACTGGGTAGACTCCT 59 NA Rattus norvegicus 81 AABR07049880.1 ENSRNOG00000049397 ENSRNOT00000010885 2 1 1 80 5 142312592 142312612 TTGTTCTCGAATGCAGTTCTC 59 142312654 142313835 AGCCACAAGATCACATCGT 59 NA Rattus norvegicus 81 Hsd17b2 ENSRNOG00000013982 ENSRNOT00000018795 3 1 1 81 19 50289485 50299007 ACAAGACAAAGGACTGTGG 58 50299052 50299070 GGTCATGGGAATGAGTTCC 58 NA Rattus norvegicus 81 Cib4 ENSRNOG00000009898 ENSRNOT00000013123 1 1 1 80 6 27253839 27253857 CGGGCAAGCACTATAAGGA 60 27253901 27287163 CTCTGAAAGGGTTGACCCT 59 NA Rattus norvegicus 81 Kcna1 ENSRNOG00000019750 ENSRNOT00000026731 2 1 1 60 4 159191115 159191134 GTACATGGAGATCGAAGAGG 57 159191074 159191094 GATATTAGCCTGCCTGTAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc5a2 ENSRNOG00000020039 ENSRNOT00000027265,ENSRNOT00000080872 2 2 2 80 1 199688193 199688213 CTGAAGAGTTAGAGGGTCCAG 59 199688255 199688358 ACTGGACCTCTTCAATCCC 59 NA Rattus norvegicus 81 Slc5a2 ENSRNOG00000020039 ENSRNOT00000027265,ENSRNOT00000080872 3 2 2 80 1 199682750 199682769 AATCCTGCTGACATTCTGGT 59 199682809 199683357 ATTGGTTCTGAACATAGACCAC 59 NA Rattus norvegicus 81 Ehbp1 ENSRNOG00000008917 ENSRNOT00000012131 2 1 1 80 14 106872708 106872726 GGATGAACTAGTGGCCCTG 60 106872440 106872665 TCTTCTTCAGCCTGCTTCTC 60 NA Rattus norvegicus 81 LOC684471 ENSRNOG00000048793 ENSRNOT00000074980 3 1 1 60 10 34415218 34415239 ATGATAGGTACATGGCTGTCTG 60 34415260 34415278 GCCTTCCAATTCATCAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp42 ENSRNOG00000001059 ENSRNOT00000001404 2 1 1 80 12 12868132 12868325 TGCTACATCAAGGCTAGCA 59 12868366 12868387 AAGCACCGATCTAATATCACTG 58 NA Rattus norvegicus 81 Map3k10 ENSRNOG00000023521 ENSRNOT00000034609 1 1 1 80 1 84485947 84490478 CTCAAGTCCATCAACATCCT 57 84485886 84485905 GAAGTCTGTGATCTTGAGCA 58 NA Rattus norvegicus 81 Vasn ENSRNOG00000004141 ENSRNOT00000005490 1 1 1 60 10 11123261 11123279 ATCTCCAACGAGACCTTCC 59 11123219 11123237 GGTTCTTGCCCAGGTAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vasn ENSRNOG00000004141 ENSRNOT00000005490 3 1 1 60 10 11122017 11122038 TGCCACCTATTCTATCTGTGTC 60 11121978 11121996 CTCCTCACCTTCAGGTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kpna2 ENSRNOG00000015329 ENSRNOT00000020795 2 1 1 80 10 95200670 95200688 AGAGCCATGAGAACGAGTC 59 95200364 95200628 GATCTTCCTCTTCCTCCACTG 60 NA Rattus norvegicus 81 Btbd11 ENSRNOG00000005758 ENSRNOT00000044331,ENSRNOT00000008596 2 2 2 80 7 24070386 24072229 CATATTCCTGTAGTTCAGCTCC 59 24070327 24070345 TGAATAGTTCTCCTCGCCA 58 NA Rattus norvegicus 81 Dtnb ENSRNOG00000011914 ENSRNOT00000077830,ENSRNOT00000060810 1 2 2 80 6 27998999 27999021 GTCATACGACTATCAACGTACAG 59 27999055 28004521 GATATCAACGAGATGAAGGTTACAC 60 NA Rattus norvegicus 81 Spata25 ENSRNOG00000015744 ENSRNOT00000021143 3 1 1 69 3 161294037 161294055 CTCATCTGGGTCTTCTGCC 60 161293616 161293634 CTATAGAGGCCAAGGGACG 59 NA DesignNoJunction Rattus norvegicus 81 Arid4b ENSRNOG00000049751 ENSRNOT00000010836 2 1 1 80 17 53899572 53899592 GATGGAGATGAGAAGACACTG 58 53895941 53899532 GTCTAGTGTTTCACTTTCAGC 57 NA Rattus norvegicus 81 Sgms2 ENSRNOG00000011284 ENSRNOT00000015020 3 1 1 80 2 236465911 236472452 GTGCTCCAAAGCTCAATGG 60 236465849 236465867 TGATGGACAATCCACCACC 60 NA Rattus norvegicus 81 Gucy1a2 ENSRNOG00000029876 ENSRNOT00000046058 3 1 1 80 8 775990 776010 TGATGGCCTTAAAGATGATGG 58 776052 876326 GAATGCCTATCCGCATCTG 59 NA Rattus norvegicus 81 Krt7 ENSRNOG00000008057 ENSRNOT00000087370 1 1 3 73 7 143059774 143059792 ACTAGACACGCTGAAGGAG 59 143060089 143060107 CCTCACTGGTCCTTTAGGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ago4 ENSRNOG00000025596 ENSRNOT00000035373 1 1 1 80 5 144527821 144533769 TTGCTAAAGAGCTTCACTGAC 59 144527761 144527779 GCAGAAACATGGTTGACCC 60 NA Rattus norvegicus 81 Nov ENSRNOG00000008697 ENSRNOT00000011904 2 1 1 80 7 94378434 94381507 AGCAACAGACATGAAAGGT 57 94381549 94381569 GTGCAATTCTTGAACTGTAGG 58 NA Rattus norvegicus 81 RGD1562037 ENSRNOG00000027938 ENSRNOT00000033359 3 1 1 121 17 55674390 55674408 GTAAAGATCAGGCCTGGCA 60 55670554 55674307 ATCATAGGAATCTGCACACCA 59 NA Rattus norvegicus 81 Olr784 ENSRNOG00000050402 ENSRNOT00000074456 2 1 1 60 3 103217277 103217297 GCACCCAAGATGATTTATGAC 57 103217237 103217258 TACAACCTCCAAATGAGATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lipa ENSRNOG00000019077 ENSRNOT00000078279,ENSRNOT00000025845 3 2 2 80 1 252833127 252845843 TTGATAAAGGTCCCAAACCAG 58 252833067 252833086 TGTCAATGTTTGTGACCCAG 59 NA Rattus norvegicus 81 Camkmt ENSRNOG00000030629 ENSRNOT00000048550 2 1 1 80 6 8711563 8711582 CTGTTCCTGGACCAGTACAG 60 8711622 8723419 AAATACCAATGCTTTCCCTGAG 59 NA Rattus norvegicus 81 Ssna1 ENSRNOG00000011093 ENSRNOT00000014993 3 1 1 97 3 2490140 2490331 GGTCAAGTGCATCGAAGAG 59 2490061 2490079 TCACCTCATTCTGTAGCCG 59 NA Rattus norvegicus 81 Igfbp2 ENSRNOG00000016957 ENSRNOT00000023068 3 1 1 80 9 80142458 80142478 TCCTCTGGAACATCTCTACTC 58 80142519 80144341 GACATCTTGCACTGTTTGAG 57 NA Rattus norvegicus 81 Fkbp11 ENSRNOG00000054775 ENSRNOT00000083955 2 1 4 81 7 140400778 140401203 ACATACACTACACGGGCAG 60 140400715 140400735 CCAAGTTCTATGACCAGAGGA 59 NA Rattus norvegicus 81 Rn60_X_0651.2 ENSRNOG00000051255 ENSRNOT00000076745 1 1 1 60 X 64157334 64157352 CTGACATCCCTAGCAACCT 59 64157292 64157311 ATGTTGCCATGACACTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0695.2 ENSRNOG00000051338 ENSRNOT00000076189 1 1 1 60 X 68596493 68596511 CTCTCACTCTACCGTTCCT 58 68596451 68596469 TCAATCATCCTGGCTACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0695.2 ENSRNOG00000051338 ENSRNOT00000076189 3 1 1 60 X 68596463 68596482 GCTCTATCCTGAAAGGTAGC 58 68596422 68596443 GTTTCTTCTTTCACTCCTTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lyrm9 ENSRNOG00000037204 ENSRNOT00000056192 1 1 1 82 10 66108655 66108673 TTACTTACTGCGTTGCTGC 59 66108719 66110742 CTTGGAAACTCTGCCTGAC 59 NA Rattus norvegicus 81 Senp5 ENSRNOG00000024794 ENSRNOT00000034757 1 1 1 80 11 72049293 72049313 CAGAATTGGTTGAATGACCAG 58 72049539 72053611 GAAGAAGTGGACCTTGTCG 58 NA Rattus norvegicus 81 Adam30 ENSRNOG00000019044 ENSRNOT00000025733 3 1 1 60 2 200330220 200330238 AAGCCCTCTCCAGATTTCC 59 200330262 200330280 TTGTCTTTCTTCAGGTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563056 ENSRNOG00000009178 ENSRNOT00000012164 2 1 1 83 5 50215499 50215517 CTTGAAGATGCAGATGCCA 58 50213244 50215454 AGCTTCTAGAGCCTTTAAGTC 57 NA Rattus norvegicus 81 LOC685351 ENSRNOG00000038499 ENSRNOT00000058683 1 1 1 81 13 84757291 84757730 CAGTTCCAGACAAAGGTGTG 59 84757229 84757247 CAGTCTCTACCACCACGTC 60 NA Rattus norvegicus 81 Rn60_X_0690.1 ENSRNOG00000051240 ENSRNOT00000075845 1 1 1 60 X 68088906 68088925 ATGCTCATTGCCTTGATCCT 60 68088865 68088889 GAATACCTTCCTGAATGATGAACTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhrs3 ENSRNOG00000015736 ENSRNOT00000021155 3 1 1 81 5 162834631 162834652 CACTACTTCATCTGTGATGTGG 59 162834694 162835307 TGATGTCACCCACCTTCTC 59 NA Rattus norvegicus 81 Rn60_14_1004.2 ENSRNOG00000060606 ENSRNOT00000082964 2 1 1 60 14 100173360 100173381 ATGACAGATACAACGAGATCCA 59 100173402 100173420 ACAGACTTAGGACCCAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061152.1 ENSRNOG00000005867 ENSRNOT00000007700 2 1 1 80 4 106983074 106983121 TCGCTCTTACAGAGATTATCG 57 106983014 106983032 CAGTTCCCACCATGATTCC 58 NA Rattus norvegicus 81 Aqp1 ENSRNOG00000011648 ENSRNOT00000087191,ENSRNOT00000015692 3 2 2 141 4 85560616 85560634 ATTGAGATCATTGGCACCC 58 85560739 85561013 CAGTGTAGTCAATGGCCAG 58 NA Rattus norvegicus 81 LOC102547963 ENSRNOG00000047131 ENSRNOT00000071042 1 1 1 83 16 4998027 4998045 GAAACTCTGGCTGGAGAGG 60 5002669 5002687 TTTCCCTTCCAGGGTTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Hspbap1 ENSRNOG00000002241 ENSRNOT00000081875,ENSRNOT00000003060 2 2 2 80 11 68150279 68150298 CCCTGATTTAAAGCGTTTCC 58 68148922 68150236 ACAAACAGAACCTGTCCTG 58 NA Rattus norvegicus 81 Ngly1 ENSRNOG00000006143 ENSRNOT00000008289 2 1 1 80 15 10422186 10423440 TCTAAAGATGAGGTGGTTGAC 58 10422126 10422144 TTTGACCTTGGTTCTCCTG 57 NA Rattus norvegicus 81 Nuggc ENSRNOG00000018238 ENSRNOT00000024527 3 1 1 80 15 49053929 49053949 AGCATCACTACCATGTTAACC 58 49053990 49054920 CTGTTCATTCCGGACATCAG 59 NA Rattus norvegicus 81 Rad54b ENSRNOG00000039949 ENSRNOT00000061370 1 1 1 80 5 25199622 25204187 CTTCTGCTTCCAAGGAAGAG 58 25204227 25204248 TAAGGATGAAACATCCAGTGAG 58 NA Rattus norvegicus 81 Ostf1 ENSRNOG00000012156 ENSRNOT00000016871 3 1 1 82 1 234789416 234792167 GAACCAGCAGAACAAGCTG 60 234792210 234792231 CTAGTAGCAACTGGACAATGTC 59 NA Rattus norvegicus 81 Dcm5 ENSRNOG00000048400 ENSRNOT00000072216 2 1 1 60 2 234298878 234298897 CCATACGTTATGCACCTCTC 58 234298918 234298938 CACACTTGTATACTGGTAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910849 ENSRNOG00000047384 ENSRNOT00000072173 1 1 1 122 11 72086623 72086641 CAGTCACCTGAGGTCATGG 60 72084675 72084693 GAAGGTAGAGCCAGAGGTC 59 NA DesignNoJunction Rattus norvegicus 81 Nr2c1 ENSRNOG00000006983 ENSRNOT00000089228,ENSRNOT00000009578 1 2 2 80 7 35086882 35090770 GGATGAAGCAAGACTCCGT 60 35090814 35090832 TAGAAGCTGCACAGTTGGA 59 NA Rattus norvegicus 81 Mapre1 ENSRNOG00000011798 ENSRNOT00000016220 2 1 2 80 3 149240735 149240754 GATGGTGCGAAAGAATCCTG 59 149240795 149245757 AGCTTCAATACTTTGACCTGC 59 NA Rattus norvegicus 81 Dnah5 ENSRNOG00000048363 ENSRNOT00000074689 2 1 1 80 2 81137602 81141737 CCAGAATCTACAGCAGTTCC 58 81141777 81141798 TCGGACATTTCAAAGTAAGGAC 59 NA Rattus norvegicus 81 Ms4a1 ENSRNOG00000020945 ENSRNOT00000028433 2 1 1 80 1 227431362 227432436 CTGTGTTCTTGGGCATTCTG 60 227431301 227431319 CATTCTCTACAACACCGGC 59 NA Rattus norvegicus 81 Npvf ENSRNOG00000010806 ENSRNOT00000014437 2 1 1 82 4 80393424 80393443 CCAGTGAATTGCTCTATGCC 59 80391866 80393379 GAACACCCGTTTCCTAGGT 59 NA Rattus norvegicus 81 LOC689968 ENSRNOG00000042265 ENSRNOT00000066536 1 1 1 80 10 31651143 31656927 TTCAACCAGGAAGCAATTCG 59 31656968 31656988 TCACAAGAACTAGAAGCAGCA 60 NA Rattus norvegicus 81 Sh3d21 ENSRNOG00000024566 ENSRNOT00000045841 3 1 1 80 5 144175594 144175613 CAGACAACTTTGTCATCCCA 58 144163980 144174108 TAATAGGAGCTGATTCCCGA 58 NA Rattus norvegicus 81 Tmem223 ENSRNOG00000019266 ENSRNOT00000026141 2 1 1 66 1 224971089 224971107 GATACGGGTTAGCTGTTGG 58 224971751 224971769 GAGTAGAGGAGACCAGCAC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07049780.1 ENSRNOG00000047815 ENSRNOT00000071641 3 1 1 60 5 137616978 137616999 TTGCTCACTCTAAGACCATCTC 60 137616939 137616958 GCACCAAACACGTACATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Elfn1 ENSRNOG00000022767 ENSRNOT00000033551 2 1 1 133 12 16753145 16813485 TCAGCAGAGAACACTTCAGG 60 16753031 16753049 GAGAATGGCTCCCTCACTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Acot6 ENSRNOG00000029637 ENSRNOT00000058101 2 1 1 80 6 107585399 107585418 ATTTGAGCCAAGTGCATCTG 59 107585459 107589780 TATTTGGACCTTTCACCTGTG 58 NA Rattus norvegicus 81 Olr1068 ENSRNOG00000050013 ENSRNOT00000041565 3 1 1 60 7 9427442 9427461 ATTCTGCTGGGATTCTGGAC 60 9427401 9427422 GCAAGAACAGTAAGAACAAGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ckap4 ENSRNOG00000008016 ENSRNOT00000010601 1 1 1 81 7 24939666 24945234 GAGCAGAAGGTACAGTCTC 57 24945278 24945297 TGAGATCCTGTTTATGCTGG 57 NA InUTR Rattus norvegicus 81 AABR07057787.1 ENSRNOG00000047389 ENSRNOT00000074064 2 1 1 117 7 87919478 87919496 CTTCACAGCGATGAGAGGA 59 87919360 87919397 TAGAGCCATGTTTGCCCTC 60 NA Rattus norvegicus 81 Yipf6 ENSRNOG00000006642 ENSRNOT00000008705,ENSRNOT00000090942 3 2 2 80 X 68630152 68631796 TCACTTGCATTGATGCTACAG 59 68631836 68631856 AACGAACACTTCTGCAAACTC 60 NA Rattus norvegicus 81 Zkscan5 ENSRNOG00000059552 ENSRNOT00000090073 3 1 1 82 12 11170289 11170307 CTCCAGTCACCAGTTTCTG 58 11164730 11170243 GAACAGGAAGGGCATTCTC 58 NA Rattus norvegicus 81 Rab7l1 ENSRNOG00000049641 ENSRNOT00000084259,ENSRNOT00000073669 1 2 2 80 13 48648525 48648544 ACAGGATCTGGATAGCAAGC 60 48648586 48649272 GACAGATCACTCTTGTTGGC 59 NA Rattus norvegicus 81 Tas2r137 ENSRNOG00000030413 ENSRNOT00000046917 2 1 1 60 4 68654149 68654167 GAAACCAAGATTGCCAGGA 58 68654190 68654209 AATCACCCACAAGGTATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103691893 ENSRNOG00000045581 ENSRNOT00000073088 1 1 1 60 3 124460889 124460908 TTGATTGGCATACGAAGGTC 58 124460848 124460866 GTTCTCCATCTGTCATCCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Efemp1 ENSRNOG00000003553 ENSRNOT00000004764 1 1 1 80 14 113203740 113203761 CGGAGGAAACCATTACATACAC 59 113212008 113212175 CATCAATATCTTTGCACTGCTG 59 NA Rattus norvegicus 81 Ccr9 ENSRNOG00000006311 ENSRNOT00000008269 3 1 1 80 8 132835314 132839692 CCACAGAATTCACAAGCCT 58 132839736 132839754 TCATGTAGTCGTCTGTGGA 58 NA Rattus norvegicus 81 Tsfm ENSRNOG00000048843 ENSRNOT00000071543 3 1 1 82 7 70318092 70318112 TGGGAGAAAGACTAAAGAAGG 57 70317186 70318048 CTGTCTCGCAGTTTACCTC 58 NA Rattus norvegicus 81 Havcr1 ENSRNOG00000007243 ENSRNOT00000009573 2 1 1 80 10 31825825 31825844 GAGTGGAGATTCCTGGATGG 60 31825885 31830709 GAGGACTTGTGGGAATTTCTG 59 NA Rattus norvegicus 81 Prox1 ENSRNOG00000003694 ENSRNOT00000004905 3 1 1 86 13 108406770 108406788 AGGAACTGTCCATCACCAG 59 108406837 108438728 TCTCTGGAACCTCAAAGTCG 60 NA Rattus norvegicus 81 Olr791 ENSRNOG00000045900 ENSRNOT00000074196 3 1 1 60 3 103447315 103447334 AACCTCTCCATTACCTGACC 59 103447274 103447295 GCAATCACTACAAAGAAGAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rassf8 ENSRNOG00000015986 ENSRNOT00000021623,ENSRNOT00000083173 1 2 2 82 4 180131576 180132031 CATAGAGACAGAGGCACCT 58 180132077 180132095 GGATACGGAGGTTACTGGG 59 NA Rattus norvegicus 81 Olr590 ENSRNOG00000049292 ENSRNOT00000073455 2 1 1 60 3 75958425 75958445 TATCCTTGTGATACCGATGCT 59 75958465 75958485 TTTCACATCCTTGTTCCTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bdh2 ENSRNOG00000014490 ENSRNOT00000019507 3 1 1 80 2 240467715 240468908 TTACCCAGGTATTCAAACTCG 58 240468948 240468968 ATCTTCTCAATTTCTGAGGCG 59 NA Rattus norvegicus 81 Potea ENSRNOG00000056767 ENSRNOT00000086783 3 1 4 82 14 85883637 85886710 TTGAAAGAAGGAGTGAAGCAG 59 85886754 85886772 GTGGCAGCTCTAGAGTCTC 59 NA Rattus norvegicus 81 LOC298111 ENSRNOG00000050117 ENSRNOT00000048383 1 1 1 84 5 52653606 52653973 AGCTCTATGGAAGAACAAAGGA 59 52653543 52653561 TCCCTAGTGATTCCATGCG 59 NA Rattus norvegicus 81 Krt73 ENSRNOG00000025087 ENSRNOT00000091540,ENSRNOT00000013122 3 2 2 80 7 143402864 143404909 CCAGACCAAGTTCCAAGAG 58 143402802 143402820 TCAGAGATCTCGTTCCTGG 58 NA Rattus norvegicus 81 Vom1r4 ENSRNOG00000045921 ENSRNOT00000052208 2 1 1 60 1 86533735 86533758 GGTTGTCATTCTCTATATGCACAG 60 86533776 86533795 GGAAACAGTGATGCTATGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r86 ENSRNOG00000051609 ENSRNOT00000087374 2 1 1 60 4 88271788 88271808 TGGACTTCATCATCTCATCCA 59 88271830 88271848 GTCAGGATAACAGGGTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362658 ENSRNOG00000023233 ENSRNOT00000074820 1 1 1 80 1 99489239 99493853 GTTGGTGTCAAGAAGTGGA 58 99493895 99493915 CCTTTCTGGTTTGAAATGCTG 58 NA Rattus norvegicus 81 Med30 ENSRNOG00000004844 ENSRNOT00000067491 1 1 2 80 7 92241631 92241650 AGCTACGACTGGTCTATGAC 59 92241690 92255751 TCTTCTGTTTGAGTTTCTCCAC 59 NA Rattus norvegicus 81 Ifrd1 ENSRNOG00000050997 ENSRNOT00000073910 2 1 1 80 6 60145630 60145649 TGATGAGGAAGGAACTCAGG 59 60144768 60145589 GTCTTCGCACTCTTATCAAGG 59 NA Rattus norvegicus 81 P3h1 ENSRNOG00000053991 ENSRNOT00000084651 3 1 1 80 5 138285148 138285170 TCAGAACCTGGCTTACTATACAG 60 138285210 138287279 TATTCCTGGGCATTCTCCC 59 NA Rattus norvegicus 81 Mitf ENSRNOG00000008658 ENSRNOT00000051121,ENSRNOT00000083127 3 2 2 81 4 130403290 130414380 CAATCACAACTTGATTGAACGG 59 130414420 130414440 TGACTTGGGAATCAAAGTACC 58 NA Rattus norvegicus 81 St8sia1 ENSRNOG00000014018 ENSRNOT00000018999 2 1 1 80 4 177106360 177114992 TTTGTCATGCGGTGTAACC 59 177106298 177106316 AGCTGTCACCAACTGAGTC 60 NA Rattus norvegicus 81 Ajap1 ENSRNOG00000050137 ENSRNOT00000071459 2 1 1 81 5 170625356 170627756 GGAAACCGATCCTCCTCTG 60 170625293 170625313 GTCAGCAGGAGATTTCAAACC 60 NA Rattus norvegicus 81 Nox4 ENSRNOG00000013925 ENSRNOT00000018990 2 1 1 80 1 150866579 150866601 TCTTCTGGTATACTCACAACCTC 59 150866640 150871124 GATACTTCAACAAGCCACCC 59 NA Rattus norvegicus 81 Nox4 ENSRNOG00000013925 ENSRNOT00000018990 3 1 1 80 1 150846856 150861940 GCTTCTCTTCACAACTGTTCC 60 150861978 150862000 TAGGTAGAAGCTGTAACCATGAG 60 NA Rattus norvegicus 81 Tnr ENSRNOG00000002468 ENSRNOT00000003407,ENSRNOT00000080254 3 2 3 80 13 77626389 77637133 ACTACCCTCACAGATCTGG 58 77637177 77637195 GGGAATGCTTTGTTTCGAG 57 NA Rattus norvegicus 81 Acd ENSRNOG00000038973 ENSRNOT00000059577 1 1 1 80 19 37666567 37666585 TGCTACAAGGTCCCTTCAC 59 37666426 37666523 TGAACACAGCTTCTTCCGT 60 NA Rattus norvegicus 81 Acsm1 ENSRNOG00000042084 ENSRNOT00000020587 2 1 4 80 1 189312525 189312722 CTTTCCAGTTACAAGTTCCCAC 60 189312763 189312781 CCAACTCTCCAGAGTCTCC 59 NA Rattus norvegicus 81 Olr587 ENSRNOG00000050681 ENSRNOT00000073336 2 1 1 60 3 75923364 75923383 AGGGTATGCTACCAATTCCT 58 75923323 75923344 GTATCAAAGCATCTGTCATTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bpifc ENSRNOG00000022937 ENSRNOT00000037290 3 1 1 80 7 23867167 23871704 CGACTATGGTCTTCAAGTTGG 59 23871745 23871764 TCAGAACCGTTCAAATCTGG 58 NA Rattus norvegicus 81 Cyp3a9 ENSRNOG00000001379 ENSRNOT00000087229,ENSRNOT00000001863 3 2 2 80 12 18699361 18701987 GAGTCTCACCAAGGTTTAACTG 59 18702028 18702046 GCTAGTGGTCTCATAGCCG 60 NA Rattus norvegicus 81 Tspan10 ENSRNOG00000046076 ENSRNOT00000071432,ENSRNOT00000070975 3 2 2 81 10 109616769 109618498 CAGAACCTGTACTTTAACTGCAG 60 109618539 109618557 CTTCCTGGAGGTTGATGCA 60 NA Rattus norvegicus 81 LOC100911166 ENSRNOG00000010528 ENSRNOT00000014129 2 1 1 80 3 112521920 112521938 CATGTTTGCCAAGACAGCT 59 112521978 112522862 CATACATATTCCTTCTCCAGCTG 59 NA Rattus norvegicus 81 Snrnp48 ENSRNOG00000013756 ENSRNOT00000018508 1 1 1 80 17 27252395 27273478 GTGACTGTTATAGCCAAAGACTG 60 27252337 27252356 TGAGGTCACAAACAGATCGT 59 NA Rattus norvegicus 81 Ldb1 ENSRNOG00000018468 ENSRNOT00000040904,ENSRNOT00000079483 3 2 2 80 1 265788443 265788590 CAAAGAGATATACCATTGGCCG 59 265788384 265788402 AATACAGCTCCGTAGCACC 60 NA Rattus norvegicus 81 Cyp20a1 ENSRNOG00000017631 ENSRNOT00000023796 2 1 1 80 9 67169402 67169420 ACACAAGGAGGTAGACCAC 59 67169463 67172687 ACTTGCTGGCAATATCTGAG 58 NA Rattus norvegicus 81 Dnase2 ENSRNOG00000023830 ENSRNOT00000014887 3 1 1 80 19 26024166 26024187 GTGTAATTCTCACTTCTCGAGC 59 26024228 26024969 CGGAGTACAGGTCATCTCC 59 NA Rattus norvegicus 81 Zbtb40 ENSRNOG00000022039 ENSRNOT00000033670 3 1 1 80 5 155370254 155370274 CAGACCTATTGTGGAGTTCCT 59 155364596 155370213 CAGCAGATCTGAATCACCCT 60 NA Rattus norvegicus 81 Ccr6 ENSRNOG00000012964 ENSRNOT00000017302 1 1 1 81 1 53066184 53087229 CCGGAACATTATTGGAAACG 58 53066122 53066143 AACATAGAGTAATCTGAGCCAG 58 NA InUTR Rattus norvegicus 81 Otulin ENSRNOG00000012017 ENSRNOT00000016111 2 1 1 80 2 80271025 80273657 TAAGGAAGAAGTGGGTCAGC 60 80270964 80270982 CGTTTGTGAACAGCTCGTC 60 NA Rattus norvegicus 81 Prune ENSRNOG00000021120 ENSRNOT00000028677 2 1 1 80 2 196432379 196432397 TTCAACACTCACAACGAGC 59 196429421 196432337 GACTCCACAGATTGTCATTCG 59 NA Rattus norvegicus 81 RGD1311933 ENSRNOG00000012581 ENSRNOT00000016989 2 1 1 80 1 31415739 31415758 ACAATGTTTCTGACTGTCGA 58 31415801 31416619 AAGGCAACTGCATGTACTG 59 NA Rattus norvegicus 81 Cat ENSRNOG00000008364 ENSRNOT00000011230 1 1 1 80 3 93397730 93397748 ACAAACTCACCTGAAGGAC 57 93396475 93397689 AAGAAAGTAACCTGATGGAGAG 58 NA Rattus norvegicus 81 Clvs2 ENSRNOG00000012122 ENSRNOT00000016518 1 1 1 80 1 25174953 25216056 GGGATCAGAGCAGGTATACAC 60 25216096 25216116 GCTCTGGATCTTCAATCATGG 59 NA Rattus norvegicus 81 Rpp30 ENSRNOG00000018718 ENSRNOT00000025412 2 1 1 80 1 254697269 254697288 AGATTTGGATCTAAGAGCGG 57 254697331 254698634 ACTGAGTATCCCAGGTGAG 58 NA Rattus norvegicus 81 Akr1c12 ENSRNOG00000033010 ENSRNOT00000041925 3 1 1 80 17 69706778 69707285 GACACATGGGAGATGTTGG 58 69706716 69706735 CTGCTTGTGGTTAAAGTTGG 58 NA Rattus norvegicus 81 Gtf3a ENSRNOG00000050016 ENSRNOT00000073026 1 1 1 80 12 9858587 9859044 GAAGCCCATAAAGAGGAGGT 59 9858526 9858545 CTTCATGTGCTGCTTAAGGT 59 NA Rattus norvegicus 81 Gtf3a ENSRNOG00000050016 ENSRNOT00000073026 2 1 1 80 12 9858587 9859043 AAGCCCATAAAGAGGAGGT 58 9858525 9858544 TCTTCATGTGCTGCTTAAGG 58 NA Rattus norvegicus 81 Sepn1 ENSRNOG00000017078 ENSRNOT00000022921 2 1 1 80 5 152758708 152762131 AACTGACAGGGTCAGTTCC 59 152758646 152758666 CTATGGTAAGAGTCTCCTCGC 60 NA Rattus norvegicus 81 Olr566 ENSRNOG00000045792 ENSRNOT00000074642 1 1 1 60 3 76000216 76000238 GCTACAGTTACCTATTTGAGACC 59 76000258 76000276 AGAGCAGTTTGTCAGTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr566 ENSRNOG00000045792 ENSRNOT00000074642 3 1 1 60 3 76000297 76000317 ACTCCTATGTTCAATCCACTG 58 76000338 76000357 TAAGAGCTGAAATCACCTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Esrp2 ENSRNOG00000023177 ENSRNOT00000026873 2 1 1 81 19 38118209 38118227 GAATTCCATGTGCAGCACC 60 38117844 38118166 TTTCTAGTCCCAAGTCCTGTG 60 NA Rattus norvegicus 81 Prdm12 ENSRNOG00000009218 ENSRNOT00000012234 3 1 1 84 3 10193010 10194384 TGTGGGAGGTATTCAACGAG 60 10192945 10192964 ATGTAGGTCATCCAGCTTCG 60 NA Rattus norvegicus 81 Tssc1 ENSRNOG00000009285 ENSRNOT00000060185 3 1 1 80 6 48127591 48127609 ACACCACAACTGTACCCAG 60 48127654 48130661 TATATCTGGCTCATGCTCCG 59 NA Rattus norvegicus 81 LOC100362226 ENSRNOG00000024412 ENSRNOT00000032589 2 1 1 64 3 2405561 2405580 TTGAAGAGGATGCAGAAGTC 58 2405607 2405625 ACCTGTGATAGCAGAACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Oxtr ENSRNOG00000005806 ENSRNOT00000007724 1 1 1 93 4 144415230 144415248 TACTGGCCTTCATCGTGTG 60 144403614 144415173 ATGAAGGCAGAAGCTTCCT 59 NA Rattus norvegicus 81 Umps ENSRNOG00000001797 ENSRNOT00000002450 2 1 1 80 11 70037692 70037713 TAGCAACAGTTATCTGTTCAGC 59 70037752 70039395 GGCGCTTAGTACCATAATCCT 60 NA Rattus norvegicus 81 Endog ENSRNOG00000016033 ENSRNOT00000021531 1 1 1 60 3 8743455 8743473 CGTTTATGTCTGCACAGGG 59 8744118 8744136 ATAGGACTTCCCATCAGCC 59 NA DesignNoJunction Rattus norvegicus 81 Map3k4 ENSRNOG00000017419 ENSRNOT00000064018,ENSRNOT00000084317 1 2 2 80 1 48703308 48703329 GTATTCCAAGCAGATCACTGTC 59 48703367 48705247 ATATTGGCACCTTTGATGTCTC 59 NA Rattus norvegicus 81 Vwce ENSRNOG00000060269 ENSRNOT00000079679 2 1 1 80 1 226701354 226701373 TGTTATCCGAGCTGAAGGAG 59 226701414 226703437 GAAACATTTCCAGCCAGACAG 60 NA Rattus norvegicus 81 Pcbp4 ENSRNOG00000012406 ENSRNOT00000017139 3 1 1 83 8 115163470 115163488 CCCAAAGGAGCCACTATCC 60 115163535 115163733 CTGGACAGAGAAACCCTGG 60 NA Rattus norvegicus 81 Rad18 ENSRNOG00000005907 ENSRNOT00000066468 2 1 1 80 4 144596537 144600113 TTGCATCCTAAATCAGCTGC 59 144596476 144596494 TTTACTTGCTTCAAGGCGC 60 NA Rattus norvegicus 81 Rgs22 ENSRNOG00000025551 ENSRNOT00000039378 1 1 1 80 7 74798171 74798190 ACGGATGAAAGACATAGCAG 58 74795672 74798128 TTACTCTCCACAGGCTTCC 59 NA Rattus norvegicus 81 Drosha ENSRNOG00000013451 ENSRNOT00000048026 2 1 1 80 2 62973342 62973364 GGACGCTTACTCTTTAATGATCC 59 62978507 62979915 TGGCTCTTGTAGTTGGAGTG 60 NA Rattus norvegicus 81 Krt82 ENSRNOG00000033403 ENSRNOT00000029461 1 1 1 80 7 143200538 143201070 CCTTGAAGAAGGATGTGGAC 58 143200477 143200497 CAATCTCATGTTCTAGAGCCT 57 NA Rattus norvegicus 81 Cyp26c1 ENSRNOG00000030698 ENSRNOT00000030962 2 1 1 83 1 256374115 256375816 CAAGAGCTGAAGGAGTTGG 58 256375863 256375881 CAGCAGGATAAGGGATGTG 58 NA Rattus norvegicus 81 RGD1564419 ENSRNOG00000050564 ENSRNOT00000075254 2 1 1 136 4 82301548 82301566 ACCTTGGGCTGCTTTAGAG 60 82303928 82303946 TCTAGGACTGGAACTCGGA 59 NA DesignNoJunction Rattus norvegicus 81 AC130035.1 ENSRNOG00000042235 ENSRNOT00000067227 2 1 1 83 5 172882843 172883058 ACAGAAATAGTTGGCACTCAG 58 172883103 172883121 TTTCCCAGGGAACATGAGG 59 NA Rattus norvegicus 81 Mfng ENSRNOG00000008133 ENSRNOT00000011079 2 1 1 88 7 119996529 119996547 GAGTCAAGACTACCTGGGC 60 119990751 119996478 GATGAATGTCTGTTGCCTGG 59 NA Rattus norvegicus 81 AABR07061136.1 ENSRNOG00000033938 ENSRNOT00000052417 2 1 1 60 4 106361801 106361819 AAGATGACCCAGTCTCCCT 60 106361841 106361861 AACTGATGGTGACTCTTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc35f6 ENSRNOG00000009459 ENSRNOT00000012558 3 1 1 81 6 27098003 27098625 AGTGAAGTAATCACAGGTGAC 58 27097942 27097961 CAAACTTCTCCTCTAGCACC 58 NA Rattus norvegicus 81 Ap2s1 ENSRNOG00000015865 ENSRNOT00000021310 2 1 1 80 1 78676249 78676267 AGTTGATCGAGGAAGTGCA 59 78676310 78681277 TCTTGAAGTTCCGGAACTCC 60 NA Rattus norvegicus 81 LOC684179 ENSRNOG00000047148 ENSRNOT00000073158 1 1 1 81 1 167826877 167827059 CCAATGTTGTTCCTCACTCC 59 167827103 167827121 TAGAGACTGCTAGGCATGG 58 NA Rattus norvegicus 81 Acvr1 ENSRNOG00000005033 ENSRNOT00000087071,ENSRNOT00000006963 3 2 2 80 3 44444443 44444466 CTTATAAGAGGGTCGATATTTGGG 59 44434540 44444405 CCACTATACCATTGCTCACC 58 NA Rattus norvegicus 81 Gabrr2 ENSRNOG00000007490 ENSRNOT00000009973,ENSRNOT00000081825 3 2 2 80 5 48330508 48341077 TCGGGACAAATTTCCATGC 59 48341120 48341139 GCCTCAGATTCACTGTAGCT 60 NA Rattus norvegicus 81 MAST1 ENSRNOG00000003469 ENSRNOT00000004646 1 1 1 80 19 26051643 26052172 CGGGTCACTTAGGTAGCAG 60 26051581 26051601 AAGAAGCAAACGAGAAATGGG 60 NA Rattus norvegicus 81 MAST1 ENSRNOG00000003469 ENSRNOT00000004646 3 1 1 80 19 26035868 26037933 TGGAGTATGTGGAAGGTGG 59 26035806 26035826 AATACATTCGAGCCATCTCCA 59 NA Rattus norvegicus 81 Kif26b ENSRNOG00000028624 ENSRNOT00000017784 2 1 1 80 13 96778958 96778976 GTGGCTGATGAAAGAGCTG 59 96776119 96778916 TCCAAGTCAAATTCACGAAGC 60 NA Rattus norvegicus 81 Epb42 ENSRNOG00000011649 ENSRNOT00000015556 3 1 1 80 3 112977944 112978779 GACTTCGGTCAGTTTGAGAG 58 112977883 112977901 GCTCCAGTCTTTCACTTGC 59 NA Rattus norvegicus 81 Cep76 ENSRNOG00000021918 ENSRNOT00000090078,ENSRNOT00000029431 3 2 2 80 18 63388241 63388260 GGAATGGAGATCTGTTCTGG 58 63384948 63388199 TTTGATTCTGTGCCTACACC 58 NA Rattus norvegicus 81 Pappa2 ENSRNOG00000042860 ENSRNOT00000039210,ENSRNOT00000089332 2 2 3 80 13 76501477 76528059 TGAAATTTGGCTCGAAGTGTG 60 76501417 76501435 TTCAAGCCATCAGATGCCA 60 NA Rattus norvegicus 81 RGD1562029 ENSRNOG00000022723 ENSRNOT00000037555 3 1 1 80 9 66384287 66384305 CAGATGGTGACAACGTCTG 59 66384349 66401215 CTCCAGTGTTTGCTTGTCC 59 NA Rattus norvegicus 81 Foxk1 ENSRNOG00000001104 ENSRNOT00000001466 3 1 1 82 12 14190942 14190960 CACTAAGTGGCATCTACGC 58 14189348 14190896 TCGGATAGAGTTCTGCCAG 59 NA Rattus norvegicus 81 Cuedc2 ENSRNOG00000019574 ENSRNOT00000026609 2 1 1 82 1 266079152 266079307 AGGAACAAAGAGACCCTGAG 59 266079089 266079107 TCATCTTGGGTGTTCCCAG 59 NA Rattus norvegicus 81 Rn60_12_0203.4 ENSRNOG00000058453 ENSRNOT00000089017 3 1 1 60 12 18254309 18254331 CTCCTGTCACCATATCTAATCCT 59 18254271 18254292 GTTTCTAAAGAGGTAGATGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tsc22d1 ENSRNOG00000001030 ENSRNOT00000058206,ENSRNOT00000001360 1 2 2 80 15 58655664 58656848 ATAGAGCAAGCTATGGATCTGG 60 58656888 58656907 GATCTGCTCCTTCAGAACCT 59 NA Rattus norvegicus 81 Tnfrsf8 ENSRNOG00000016782 ENSRNOT00000022968,ENSRNOT00000085929 3 2 2 80 5 163206358 163208679 TCCAGATCCAGGTAATGCAG 59 163206297 163206317 TCTGAAGTACTGATGTCAGGG 59 NA Rattus norvegicus 81 Lurap1l ENSRNOG00000033740 ENSRNOT00000041374 3 1 1 82 5 98469442 98514393 AGGAGATGGTGAACCTCAG 58 98514439 98514457 CTTGATGGACTCGATGCTC 58 NA Rattus norvegicus 81 Camsap3 ENSRNOG00000000986 ENSRNOT00000001305,ENSRNOT00000084906 3 2 2 80 12 2148423 2150039 TTACGACTTGAGGAGGTGTG 60 2150081 2150100 GAAGTCTTGTACCAGCTGGA 60 NA Rattus norvegicus 81 Otud4 ENSRNOG00000018477 ENSRNOT00000024924 1 1 1 80 19 31935671 31938175 TTGAAGCGTTTATAGAAGGGTC 59 31928651 31928669 TCTCCACTTGTCCTACCCA 60 NA Rattus norvegicus 81 Rn60_7_1414.2 ENSRNOG00000059186 ENSRNOT00000088489 2 1 1 83 7 143583119 143583137 CTCCAGACACATGGAAGGG 60 143583183 143583202 CATGTGGATCAAACCTTGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Calhm2 ENSRNOG00000020325 ENSRNOT00000027526 2 1 1 80 1 266909268 266911259 ATGAGTCCCAGCTCTTTGG 59 266909206 266909226 AGTAATGCTTGAAGCACTTGG 59 NA Rattus norvegicus 81 Epsti1 ENSRNOG00000009471 ENSRNOT00000012632 1 1 1 80 15 60152076 60161460 TCAAGATGGAAACTTCCAGTC 58 60163514 60163533 TTCCTTCTGTGGAGAATCCT 58 NA Rattus norvegicus 81 Rn60_13_0836.2 ENSRNOG00000051207 ENSRNOT00000076646 3 1 1 60 13 78674381 78674400 TGTAGACATCAAGGGAATGG 57 78674422 78674441 CCGTGGTTAACACTTATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stard8 ENSRNOG00000033883 ENSRNOT00000043872,ENSRNOT00000081662 1 2 2 80 X 68777423 68778025 GACCATGCAGGAAACTTCG 59 68778067 68778087 TGTTGATCTCCAGTGACTCTG 60 NA Rattus norvegicus 81 Med9 ENSRNOG00000053961 ENSRNOT00000088300,ENSRNOT00000089724 1 2 2 86 10 46314837 46327720 ATCAAATGCATGGACAAGGAC 59 46327768 46327786 TATGAGCTTCCGCATCTCC 59 NA Rattus norvegicus 81 Cxcl9 ENSRNOG00000022242 ENSRNOT00000003082 1 1 1 80 14 17230091 17232363 AACTGAAATCATCGCTACACTG 59 17232403 17232422 TTCATCAGCTTCTTCACCCT 59 NA Rattus norvegicus 81 Slc25a34 ENSRNOG00000021526 ENSRNOT00000022820 3 1 1 126 5 160179552 160179571 TTTCTACTGCTACAGCCTGG 60 160178187 160179463 TGTCTTGACCAGGTAAGCA 59 NA Rattus norvegicus 81 H2afv ENSRNOG00000052275 ENSRNOT00000082893 3 1 1 88 14 86690146 86694863 GTACCTCACAGCTGAGGTG 60 86690076 86690094 CAAGCTGTAAGTGACGTGG 59 NA DesignNoJunction Rattus norvegicus 81 Klk1c9 ENSRNOG00000032857 ENSRNOT00000025831 1 1 5 82 1 100201190 100201208 TCGGCGAATACCTATGTGG 59 100201254 100202185 CTGGTAATTGTCGGTTGCG 60 NA Rattus norvegicus 81 Tnfrsf4 ENSRNOG00000020106 ENSRNOT00000027251 2 1 1 80 5 173448848 173448867 CTGAGGATACTGTCTGCCAG 60 173448909 173449317 GAACACAGTCAACTCCAAGC 60 NA Rattus norvegicus 81 Tnfrsf4 ENSRNOG00000020106 ENSRNOT00000027251 3 1 1 80 5 173448209 173448227 GCCTGGCTTCTACAATGAG 58 173448271 173448827 AGTTCACTTCCACTTCGGT 59 NA Rattus norvegicus 81 Tsta3 ENSRNOG00000009020 ENSRNOT00000012306,ENSRNOT00000082058 2 2 2 83 7 116959378 116959529 CCATCATCCTCTCAGTGGG 59 116959313 116959331 CAGAGAAGTCCATGGCCTC 60 NA Rattus norvegicus 81 Slc25a5 ENSRNOG00000039980 ENSRNOT00000015085 2 1 1 80 X 123406817 123406836 GCTGGCCTAACTTCTTATCC 58 123406877 123407233 CATGATATCAGTTCCTTTGCG 58 NA Rattus norvegicus 81 RGD1561582 ENSRNOG00000021528 ENSRNOT00000036556 2 1 1 81 8 116320781 116320937 AATCTGATTCCTCAGGGCA 58 116320978 116321000 CTCATACTTCATAGAGGATCACG 58 NA Rattus norvegicus 81 Zfp90 ENSRNOG00000020087 ENSRNOT00000027209,ENSRNOT00000087655 2 2 2 80 19 38601996 38602015 CTTCAAACTGGAGCAAGGAG 59 38602058 38607146 CTGGTCTTCCAGTCTGGAC 59 NA Rattus norvegicus 81 Dynlt1 ENSRNOG00000018207 ENSRNOT00000024656 3 1 1 82 1 47208268 47211468 TAAAGGAGGCTATAGAAAGTGC 58 47208207 47208228 TTCTACAACATTAGTGGTCCAC 58 NA Rattus norvegicus 81 RGD1564541 ENSRNOG00000012564 ENSRNOT00000016993 3 1 1 80 X 123465960 123465979 GTAGTGAAATTTGGCCAAGG 57 123465033 123465921 GGTCATCATAACCTTCTTAGGAG 58 NA Rattus norvegicus 81 Bhlhe40 ENSRNOG00000007152 ENSRNOT00000009563 3 1 1 80 4 140704573 140704591 AGACGTGACCGGATTAACG 60 140704630 140705557 GTGACCCAAAGTAGTAAGTTTGAG 60 NA Rattus norvegicus 81 Camsap1 ENSRNOG00000017883 ENSRNOT00000024163,ENSRNOT00000078020 1 2 2 80 3 3388435 3390692 CTGAGTGTCTTGGGAAAGG 58 3388373 3388391 ACACTTTCTGCTGCTTCTG 58 NA Rattus norvegicus 81 Lrfn2 ENSRNOG00000011803 ENSRNOT00000015705 3 1 1 95 9 13847048 13875746 AGGTACTGATTTACAGGATGATCC 60 13846976 13846994 TAGCCAGTACGCACAAGTC 60 NA Rattus norvegicus 81 LOC688754 ENSRNOG00000015161 ENSRNOT00000020399 2 1 1 81 18 51613656 51613674 TGTGGACTTTGACATCGCT 60 51613591 51613609 ATTCATCTGGTAGCCAGCC 60 NA DesignNoJunction Rattus norvegicus 81 Ddx25 ENSRNOG00000012260 ENSRNOT00000017307 1 1 1 80 8 36760003 36760021 TAGGAGTACCACAGTCCCA 59 36759211 36759708 GCCAAATCCACTACATCGTC 59 NA Rattus norvegicus 81 Rbm4b ENSRNOG00000061795 ENSRNOT00000084410 1 1 1 80 1 220010466 220010484 CCTTTGTACACATGGAGCG 59 220010526 220015531 TTCGTTTGCCTTGAAACTCTG 60 NA Rattus norvegicus 81 Znf750 ENSRNOG00000046482 ENSRNOT00000074193 1 1 1 77 10 110699716 110699734 AAGCAGAACAGAGTCTCCA 58 110699543 110699561 AAAGAGGTACTGCTCCCTG 59 NA DesignNoJunction Rattus norvegicus 81 Znf750 ENSRNOG00000046482 ENSRNOT00000074193 2 1 1 78 10 110699717 110699735 CAAGCAGAACAGAGTCTCC 58 110699543 110699561 AAAGAGGTACTGCTCCCTG 59 NA DesignNoJunction Rattus norvegicus 81 Olr772 ENSRNOG00000048092 ENSRNOT00000040364 1 1 1 60 3 102926226 102926247 GCCCTGTATCTTCATCTATGTG 59 102926267 102926286 AGCAAGAAATTTGTCGAACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wsb2 ENSRNOG00000001135 ENSRNOT00000001499 1 1 1 80 12 44944292 44944312 GTTACAGCTTCGTATGACACC 59 44943743 44944251 CTGAGTGTGATGAAGTGACC 58 NA Rattus norvegicus 81 Dnajb9 ENSRNOG00000004006 ENSRNOT00000005363 3 1 1 86 6 64168229 64168248 TTAGCCATGAAGTACCACCC 60 64167431 64168183 GAGTGTTTCATATGCTTCTGCA 59 NA Rattus norvegicus 81 Vom1r29 ENSRNOG00000048033 ENSRNOT00000075596 1 1 1 60 1 68222027 68222045 GAGGGTTCAACACATCCAC 59 68222069 68222087 GGCTTGAGATTCTGGTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5c1 ENSRNOG00000019223 ENSRNOT00000064802,ENSRNOT00000041346 3 2 4 80 17 72226717 72226740 AGTCTGTTATCTCCTACAAGACAG 60 72226777 72227839 AAATGCTCATGTTCTCAGCAG 59 NA Rattus norvegicus 81 Cfap53 ENSRNOG00000014585 ENSRNOT00000019573 3 1 1 80 18 70273752 70273771 CACTCTCGTGAAAGCAAGAG 59 70273812 70274413 TCACGTAGCTTATTTCGTCTC 58 NA Rattus norvegicus 81 Kctd6 ENSRNOG00000007817 ENSRNOT00000010303 1 1 1 80 15 18485948 18487953 AGACTGGAGCTATATGATGACTG 59 18485890 18485910 GTCAACGTGGTAAGAGATGTC 59 NA Rattus norvegicus 81 Slc22a20 ENSRNOG00000022673 ENSRNOT00000065532 3 1 1 80 1 221342397 221342415 TACTGCATCTTCCGGTTCC 60 221340796 221342355 CATCCATTCTACAACCAGGGA 60 NA Rattus norvegicus 81 Plxnc1 ENSRNOG00000007970 ENSRNOT00000011178 2 1 1 80 7 35967450 35967469 GTTCTACAAGCTCGTTCCTC 58 35963455 35967409 ACTTGAATTCTTCTCACCTCC 58 NA Rattus norvegicus 81 AABR07030970.1 ENSRNOG00000049635 ENSRNOT00000041082 1 1 1 80 10 111279302 111280479 TGCCAATGATACACCAACAG 59 111279241 111279262 CACTTGGTTTGTTCTAAGTTGG 58 NA Rattus norvegicus 81 Tmem206 ENSRNOG00000003915 ENSRNOT00000005387 2 1 1 80 13 110030449 110031469 GAAAGTCCAGGATATAATCACGG 59 110031506 110031527 GCTTTAAATAATGCCAGGAACG 59 NA Rattus norvegicus 81 Gemin2 ENSRNOG00000004360 ENSRNOT00000006137 1 1 1 80 6 80116552 80118440 TCCAGAATTGGGAAGATGGT 59 80118483 80118501 CGAATCAGTGAGTGAGCCT 60 NA Rattus norvegicus 81 Tac1 ENSRNOG00000007374 ENSRNOT00000009888,ENSRNOT00000034719,ENSRNOT00000052333 1 3 3 80 4 33639426 33639444 TTTGCAGAGGAAATCGGTG 59 33639487 33640445 CATTGCCTCCTTGATTTGGT 59 NA Rattus norvegicus 81 Rn60_X_0745.2 ENSRNOG00000051072 ENSRNOT00000075871 2 1 1 85 X 73639708 73639727 TCAGGAACAAAGACATTGCT 58 73639595 73639661 GCTGATTCTCCTCATCACTG 58 NA Rattus norvegicus 81 Vsx1 ENSRNOG00000042220 ENSRNOT00000061469 3 1 1 85 3 146487403 146488390 GGATACAGGTCTGGTTCCA 58 146487336 146487354 GTACTCAGCCATCACACTG 58 NA Rattus norvegicus 81 Gpr31 ENSRNOG00000039255 ENSRNOT00000060121 2 1 1 60 1 53520621 53520639 CGTCTACCTGTTCAACCTG 58 53520579 53520598 TAAGAATGGCAGACTGGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mmel1 ENSRNOG00000012593 ENSRNOT00000017957,ENSRNOT00000064266 2 2 2 80 5 172302488 172302998 CAGGCATACAAGGCTTACC 58 172303041 172303060 AGCATAGGTCAGGTTCAGTC 59 NA Rattus norvegicus 81 Mrpl49 ENSRNOG00000020975 ENSRNOT00000028475 1 1 1 80 1 221417474 221417586 TGACATCTGGGCTCTACAG 59 221417412 221417431 TCATTAACCTGGGTGACAGG 60 NA Rattus norvegicus 81 AABR07049579.2 ENSRNOG00000050523 ENSRNOT00000072754 3 1 1 60 5 129381232 129381252 GCAGTCCAGTTCTGTATAGTC 58 129381274 129381292 CTAGGTAGTGCCACTGCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361879 ENSRNOG00000045749 ENSRNOT00000071297 2 1 1 62 14 83220297 83220315 CTACATCCGGTTCTCCCAG 59 83220341 83220359 TTGAACTCGGTCTTCAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dcun1d5 ENSRNOG00000008390 ENSRNOT00000061916 1 1 1 80 8 5454538 5454557 AGTCTATGCTAGCTCTGCTG 59 5454598 5456381 GATACTTTGATTGCTCCAGGT 58 NA Rattus norvegicus 81 Immp1l ENSRNOG00000004829 ENSRNOT00000006406 3 1 1 80 3 96002544 96023071 CTTTAAGAGCCGTAACTATGTACC 59 96023106 96023128 CATCTGGAATCGGTAGAATTCTC 59 NA Rattus norvegicus 81 LOC103690997 ENSRNOG00000060271 ENSRNOT00000078636 3 1 1 60 1 60332219 60332237 CCCTTCTCCAAGAAGCTCC 60 60332177 60332198 GCAAACAAGAATCAAGATGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrpl20 ENSRNOG00000018647 ENSRNOT00000025213 1 1 1 84 5 173250810 173252431 TAGTTAAGTGCCAGGTGGA 58 173252477 173252497 GCAGCCAAAGATTTAAACGTC 59 NA Rattus norvegicus 81 Cep126 ENSRNOG00000021839 ENSRNOT00000029887 3 1 1 85 8 6261512 6261530 ACTATCTGTGCCCTCTCAG 58 6258710 6261466 GCTTCTTGTACATAGTACAGCC 59 NA Rattus norvegicus 81 Gabrd ENSRNOG00000016385 ENSRNOT00000022246 1 1 1 80 5 172798483 172798503 CCACTTCAATGCTGACTACAG 59 172798149 172798441 TTCCTCACGTCCATCTCTG 59 NA Rattus norvegicus 81 Tnfrsf18 ENSRNOG00000022012 ENSRNOT00000038747 2 1 1 82 5 173461685 173461703 ACTGTGAAGACCCTCAGTG 59 173461744 173462297 CTTAATATTCCCTTGAGACTCCAC 59 NA Rattus norvegicus 81 Nomo1 ENSRNOG00000021118 ENSRNOT00000028680 1 1 1 80 1 102030522 102031375 TGAAGGAGGCAAGTACCAC 59 102031416 102031437 CATTATAGCCAGCCACTATGAG 59 NA Rattus norvegicus 81 Tspy1 ENSRNOG00000054648 ENSRNOT00000077988,ENSRNOT00000083382 3 2 2 80 Y 152647 153828 GGCTAAAGCTATGATGAACCA 58 153866 153888 CTCAACATGTAGCTCAGTAAGTC 59 NA Rattus norvegicus 81 Rn60_5_1514.1 ENSRNOG00000030173 ENSRNOT00000043325 2 1 1 78 5 147637323 147637341 TCAGAACCAGAGCGATGTC 60 147637380 147637401 GATTAAACCATTTGCAATCCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912289 ENSRNOG00000026440 ENSRNOT00000036657 3 1 1 60 1 201901485 201901504 GGACAGTTCTTCATCAGACC 58 201901526 201901545 TGTCATCTTCAGAGCAGACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr200 ENSRNOG00000048852 ENSRNOT00000048075 2 1 1 60 1 170147895 170147914 CTGTCAACAGGTTCTACCAG 58 170147935 170147955 AGAATCATGTCACTTCCAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndst2 ENSRNOG00000027171 ENSRNOT00000035100 2 1 1 80 15 3757084 3757102 TTCTCGTGAACTGGATCGA 59 3757144 3757291 GTCATAAAGACACTGATCGGA 58 NA Rattus norvegicus 81 Ndst2 ENSRNOG00000027171 ENSRNOT00000035100 3 1 1 80 15 3759529 3759548 GCCTCAATGGAGATCATCCA 60 3759591 3759774 ATCTGCATCGAACCTGAGG 60 NA Rattus norvegicus 81 Ncan ENSRNOG00000048036 ENSRNOT00000064308,ENSRNOT00000092136 2 2 2 80 16 21069202 21069221 TGCATTGATGAGGTGAATGG 59 21069264 21069694 TCCTTCTGTGTCCTTCTCG 59 NA Rattus norvegicus 81 Gatm ENSRNOG00000000168 ENSRNOT00000000181 2 1 1 80 3 114726693 114726715 ACCCTTTAGAGGAAGTGATAGTG 59 114720955 114726654 ATGTATTGGCCTTCACCTCC 60 NA Rattus norvegicus 81 LOC100912429 ENSRNOG00000046920 ENSRNOT00000075184 2 1 1 80 15 19278212 19281264 TCAAAGTGAAGCAGGAACG 58 19278150 19278169 GCTCCTGTTCTGATAACTCC 58 NA Rattus norvegicus 81 Olr429 ENSRNOG00000025721 ENSRNOT00000036382 1 1 1 60 3 21292346 21292367 TGGTATTACAGACAGTTTCCTC 58 21292388 21292406 GCAGATAGCAACATAGCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041140.1 ENSRNOG00000006459 ENSRNOT00000050793 1 1 1 110 X 120314470 120314488 AAAGACATTGTGGCTGAGG 58 120314562 120314583 GCACCTGTATTTCTTGATTTGC 59 NA DesignNoJunction Rattus norvegicus 81 Ndufs1 ENSRNOG00000011849 ENSRNOT00000015852 2 1 1 80 9 69947895 69948512 CCTAAAGGATATGTTCGATCAACTG 60 69947839 69947857 CACCATGACAGACTGACCA 59 NA Rattus norvegicus 81 Caskin1 ENSRNOG00000003195 ENSRNOT00000004486,ENSRNOT00000043951 3 2 2 80 10 13864736 13864848 GGCTACTGCTGGATAGTGG 60 13864891 13864910 TAAATTGGTGCACGATGTCC 59 NA Rattus norvegicus 81 Lmntd1 ENSRNOG00000015910 ENSRNOT00000085386,ENSRNOT00000021306 3 2 2 83 4 179685082 179693136 GCCAGTTTGTATCAAGTTCTC 57 179685019 179685037 AGGAGTTAACAAGCCTCAC 57 NA Rattus norvegicus 81 Eif3j ENSRNOG00000016459 ENSRNOT00000022437 2 1 1 103 3 113976921 113976939 CGTTCTCTATGGAGGACCC 59 113977005 113989404 CCAGTTATCCTTCACGTCCT 59 NA Rattus norvegicus 81 Gid4 ENSRNOG00000003847 ENSRNOT00000005237 1 1 1 80 10 46791431 46798899 CTTACAGAGGAATATCCAACCC 58 46798938 46798958 CTTCCGAGTTAAGAAAGGGTG 59 NA Rattus norvegicus 81 Sprr1a ENSRNOG00000024028 ENSRNOT00000012174 3 1 1 167 2 192669912 192671041 CTGAGTATTAGAACCAAGTACTACC 58 192669769 192669788 CTCAGGAATAGGGTGACAGG 59 NA InUTR Rattus norvegicus 81 Traf3ip3 ENSRNOG00000005565 ENSRNOT00000007649 3 1 1 80 13 111914331 111914350 AACAGGCCAAGTGTCTATCC 60 111911852 111914288 ATCCCTGTTTCCTGCTGTC 60 NA Rattus norvegicus 81 RT1-S2 ENSRNOG00000029001 ENSRNOT00000042882 2 1 1 82 20 3156681 3156878 GAGGAGAAACACAGGTGGA 59 3157047 3157065 CCAGAGACAAGTCAGACCG 60 NA Rattus norvegicus 81 Tmx4 ENSRNOG00000024852 ENSRNOT00000034567 3 1 1 86 3 127545265 127561969 ATTCAAGAACCAGGTTTGAGTG 59 127544496 127544514 GTAACGGCGGAATATCCCA 60 NA Rattus norvegicus 81 Chpf ENSRNOG00000020038 ENSRNOT00000027165 3 1 1 98 9 82671922 82671940 AATGACATCGTCAGTGCTC 58 82671356 82671860 GTAGTGCATTCCCTCATGG 58 NA Rattus norvegicus 81 RGD1562673 ENSRNOG00000057127 ENSRNOT00000082035,ENSRNOT00000080810,ENSRNOT00000091772 3 3 3 94 10 13321421 13323537 TTCATTAAGGGCATCCAGCT 60 13321346 13321365 CCATCCTCCAGAAGGAACTC 60 NA Rattus norvegicus 81 Rexo2 ENSRNOG00000018939 ENSRNOT00000087265,ENSRNOT00000047633 1 2 2 80 8 52813071 52813095 GAGAAGGATCAGATTATTGAGATGG 59 52808684 52813034 AATCAGGTTGGGACCTTCAG 60 NA Rattus norvegicus 81 Stoml3 ENSRNOG00000011006 ENSRNOT00000014765 2 1 1 80 2 142717440 142726433 AGAACAATTTAGTGGGCACC 59 142726475 142726494 GCATCAACAGGAAGGAAAGG 59 NA Rattus norvegicus 81 Slc7a10 ENSRNOG00000010938 ENSRNOT00000015205 2 1 1 80 1 91445422 91446120 CCCTCGAAAGAACCTACCT 58 91446162 91446182 TAGGCAACATTGGTGAATGTG 59 NA Rattus norvegicus 81 Cul1 ENSRNOG00000005310 ENSRNOT00000007620,ENSRNOT00000085805 3 2 2 80 4 77278668 77278686 CACCAGCAGTTACTTGGTG 59 77278727 77279676 AATGCATTTCTTGATCACTGGG 60 NA Rattus norvegicus 81 Rcl1 ENSRNOG00000015491 ENSRNOT00000020809,ENSRNOT00000048910,ENSRNOT00000083511 1 3 3 80 1 247245654 247245674 AGCTTTATAAGGCTGTTGGAC 58 247245712 247248487 CTGGTAGTATAAGGTTGTTCCTG 58 NA Rattus norvegicus 81 Ifne ENSRNOG00000024204 ENSRNOT00000029976 2 1 1 60 5 107233438 107233457 ACCAAGAGGGACATGTACTG 59 107233479 107233498 AAGAGAACGAAGATCTGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Actr2 ENSRNOG00000004959 ENSRNOT00000006607 3 1 1 80 14 104348640 104351215 GTTGAGTCATACACTCTTCCAG 59 104348581 104348601 CTGAAATAAAGCTTCTGGTGC 58 NA Rattus norvegicus 81 Olr140 ENSRNOG00000049204 ENSRNOT00000050606 1 1 1 60 1 169209209 169209228 CCTCACTCTTACCACACTCC 60 169209249 169209269 GATTTCCCGAATGTTGAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kctd4 ENSRNOG00000050996 ENSRNOT00000075786 1 1 1 60 15 58016649 58016670 ATTACTTCATTGACAGGGATGG 58 58016688 58016709 CCATTTCGTAGGAAGTTTAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc45a1 ENSRNOG00000018229 ENSRNOT00000024581 2 1 1 83 5 167672524 167673674 GTAAGAAGTTTGCAGGGTCC 59 167672460 167672478 GAAAGTACTGGCAGCTGAG 58 NA Rattus norvegicus 81 Tmtc4 ENSRNOG00000014310 ENSRNOT00000019602,ENSRNOT00000078424 3 2 2 80 15 109347345 109347363 AATGCCACCGTAATGAAGC 59 109345774 109347303 GGCTAAGTTACCTGTGTTGTC 59 NA Rattus norvegicus 81 Mex3c ENSRNOG00000015777 ENSRNOT00000041227 1 1 1 61 18 69550125 69550143 CATGTCGCTGAGATTGTCG 59 69568755 69568773 TTTGTCTTGGCTCTCAGTG 58 NA DesignNoJunction Rattus norvegicus 81 Ankrd24 ENSRNOG00000006759 ENSRNOT00000008882 2 1 1 82 7 10922236 10922254 TAGTGGCTTCCCTACAGGA 59 10922072 10922190 CTCCTCAAGGATCTGGACC 59 NA Rattus norvegicus 81 Olr1179 ENSRNOG00000033150 ENSRNOT00000050101 1 1 1 60 8 20728939 20728957 GAACCTGCTCATCATCCTG 58 20728976 20728999 GAAGTACATAGGATTATGGAGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stag3 ENSRNOG00000001360 ENSRNOT00000092039,ENSRNOT00000042006 1 2 2 80 12 19630137 19630158 CTACTTCATAGCCCTTCTTCTC 58 19630197 19630430 TCAGAAATCCTCCATGTTCAG 58 NA Rattus norvegicus 81 Ciita ENSRNOG00000002659 ENSRNOT00000003572,ENSRNOT00000085310,ENSRNOT00000085479 2 3 3 80 10 5223408 5226998 AAGCTAGAGTTTGCATTGGG 59 5223347 5223365 GGAAGAGAATGCTGGAAGG 58 NA Rattus norvegicus 81 AABR07055834.1 ENSRNOG00000021900 ENSRNOT00000042386 1 1 1 80 7 10773858 10773876 TGGATCCTTCCCAGAAGAG 58 10772989 10773818 CGGATGTTATACCTATAGCAGTG 59 NA Rattus norvegicus 81 RT1-M1-1-ps ENSRNOG00000061923 ENSRNOT00000088528 1 1 1 80 20 2436563 2436823 CCCTGAATGAGAAATGAGATCC 59 2436504 2436524 CATGATAACCTGGAGAAGGTC 58 NA Rattus norvegicus 81 RGD1559441 ENSRNOG00000024953 ENSRNOT00000042810 2 1 1 80 5 24892926 24892944 AGATGCCTTGGATGATCGG 60 24892988 24894897 TCCTTGTCTGACCAACCTC 59 NA Rattus norvegicus 81 Lrriq1 ENSRNOG00000004564 ENSRNOT00000071306 2 1 1 80 7 45175772 45175790 CAAGCGTGTATCTGTTCCT 58 45172690 45175729 CTCAAATCAGCCTCATCTGG 59 NA Rattus norvegicus 81 Ccng2 ENSRNOG00000002089 ENSRNOT00000002876 1 1 1 80 14 16270344 16270364 CAACAGCTACTACAGTGTTCC 59 16268938 16270302 CCAGAGTCCTCACTCTCAC 59 NA Rattus norvegicus 81 Dok2 ENSRNOG00000013922 ENSRNOT00000018725 3 1 1 85 15 52451368 52452359 GACCTTTGGCAAGAAGTGG 59 52452407 52452426 CATCCTGGAGCTCTAGTCTG 59 NA Rattus norvegicus 81 Dnajc11 ENSRNOG00000008802 ENSRNOT00000011960 1 1 1 80 5 169124816 169127056 CTTATGAAGTGCTTAGCGACC 59 169127098 169127116 CCCATCCTTCCATCTCCAG 59 NA Rattus norvegicus 81 Iqcc ENSRNOG00000048553 ENSRNOT00000074345 1 1 1 80 5 147820342 147820455 ATTAACAGTCGGAAGGAGTACC 60 147820283 147820303 AGTAGGCTTGTCTCTGATCTG 59 NA Rattus norvegicus 81 Tle2 ENSRNOG00000005874 ENSRNOT00000084006,ENSRNOT00000061279 2 2 2 85 7 10999297 11001595 CCTCACTCAGGAGCATCAG 60 10999230 10999249 CCAAGAGGTTGTTCAGTTCC 59 NA Rattus norvegicus 81 Pycr1 ENSRNOG00000036682 ENSRNOT00000054949 1 1 1 120 10 109820084 109820102 GAAGATGGCAAGCTTGTGG 60 109819874 109820000 CTGTGAAAGCATAGGCAGG 59 NA Rattus norvegicus 81 Galnt16 ENSRNOG00000004589 ENSRNOT00000006460 1 1 1 80 6 104243925 104243945 ACCTCCACCTTAATGTCTTCC 60 104243987 104248027 TCTCCATTTCTGCTTGCCT 59 NA Rattus norvegicus 81 Wbp1l ENSRNOG00000020020 ENSRNOT00000027118,ENSRNOT00000080509 1 2 2 118 1 266401977 266409952 TGAACTCTGGTGGTTCTGG 59 266410034 266410052 TGATTTCATGTTGCCGCTG 60 NA Rattus norvegicus 81 Eif2b2 ENSRNOG00000006467 ENSRNOT00000008730 2 1 1 80 6 109045552 109046293 TGCTAGTGGAACTGGAAGG 59 109046337 109046355 TCATGATCACCTCGTTGGA 58 NA Rattus norvegicus 81 LOC100912365 ENSRNOG00000004066 ENSRNOT00000005407 2 1 1 60 13 104283498 104283517 AACTTTGTCCATCAGAGGAG 57 104283457 104283475 CTTCCCACTTCTCTTCAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem238 ENSRNOG00000017306 ENSRNOT00000023246 2 1 1 66 1 72624905 72624923 GGACCTGCTCATCTACTCC 59 72624953 72624971 GTACCAGAGAATCCAGCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vps37d ENSRNOG00000048699 ENSRNOT00000071569 1 1 2 151 12 24652982 24653000 TGCTTGGCCTCTAACTACG 60 24653114 24655204 ATGCTCTTCTCCAGTCTCTG 59 NA Rattus norvegicus 81 AC142182.1 ENSRNOG00000028417 ENSRNOT00000038833 3 1 1 238 10 86282021 86282039 GTAACTTCCTCACGGAGCA 59 86281795 86281813 CTCGGAGCTGTTGTAGTCC 60 NA DesignNoJunction Rattus norvegicus 81 Patl2 ENSRNOG00000017061 ENSRNOT00000022964 2 1 1 80 3 114067547 114069126 TGGTACTTCAGAATCAGTTTGG 58 114067488 114067506 AAGAATCCAGGGACACCAG 59 NA Rattus norvegicus 81 Rps6ka2 ENSRNOG00000013194 ENSRNOT00000017809 3 1 1 80 1 53433956 53436110 GCATTACGCCTTTCAGACC 59 53436154 53436172 GAAAGCCTGGTGAAGAGGT 60 NA Rattus norvegicus 81 Nup54 ENSRNOG00000002247 ENSRNOT00000003070 1 1 1 80 14 17139325 17139606 CCACTCAGTTCAAAGGTCG 59 17139649 17139668 CTTCAGATTTCACAGCTCCA 58 NA Rattus norvegicus 81 Olr517 ENSRNOG00000032434 ENSRNOT00000046947 2 1 1 60 3 74058785 74058804 CCTTTCTTTCTGTGCATCCA 59 74058826 74058845 CAGCAATGGAGGAATGTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scfd1 ENSRNOG00000031203 ENSRNOT00000040548 2 1 1 80 6 72130289 72130310 GCGGATGTTGAATTTCAATGTG 60 72130345 72132560 AATCTGTCATAGATGAGTACCTTCC 60 NA Rattus norvegicus 81 Vil1 ENSRNOG00000015408 ENSRNOT00000021432 3 1 1 80 9 81699642 81699663 GAAACAAACTCCTGTGATGTCC 60 81699704 81699842 GGACATTTCCACCTCTCCA 59 NA Rattus norvegicus 81 Narf ENSRNOG00000036664 ENSRNOT00000054920 1 1 1 80 10 110460153 110460173 TGATCATGAAGCTCAAGAAGG 58 110460214 110461929 TGCCATTTAAGCATCCTCTG 58 NA Rattus norvegicus 81 Zbtb48 ENSRNOG00000009595 ENSRNOT00000012745 1 1 1 80 5 169194826 169194846 AAGTGTTACTTTCGCAAGGAG 59 169194168 169194785 GCATGTGAAGACCTGTTCTG 59 NA Rattus norvegicus 81 Olr654 ENSRNOG00000047650 ENSRNOT00000042667 3 1 1 60 3 77169793 77169813 CTATAATGAGTGCATGACCCA 58 77169753 77169771 GAAGATTTCCACACCTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sdhaf3 ENSRNOG00000011283 ENSRNOT00000050827 2 1 2 91 4 32541759 32541777 CTCTGACACAAGCACACTG 59 32541830 32558607 CTGCTGCATATGTTATCTCGT 58 NA Rattus norvegicus 81 Htr3a ENSRNOG00000006595 ENSRNOT00000008965 1 1 1 80 8 53217273 53218993 TCAATGAGTTTGTGGACGTG 59 53217212 53217231 TGTAGTTCTGGACTTCACCT 58 NA Rattus norvegicus 81 Phf5a ENSRNOG00000024170 ENSRNOT00000005837,ENSRNOT00000090984 1 2 2 80 7 123095892 123100493 ATTCAGGAGAAGGATAGAGATGG 59 123095834 123095852 TTTGCGCTCATAGAACAGG 58 NA Rattus norvegicus 81 LOC102553939 ENSRNOG00000045837 ENSRNOT00000041664 3 1 1 80 19 321603 321625 ACTTAGAGATGGAGAACACTGAG 59 321663 322316 TGAGCAGGTTTCTAGAGAAGG 59 NA Rattus norvegicus 81 LOC100363509 ENSRNOG00000006924 ENSRNOT00000009061 1 1 1 60 5 137371979 137371997 CTGTACAGAGGCGTTCTCC 60 137371937 137371955 GATGCTAAAGATGCTGCCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363509 ENSRNOG00000006924 ENSRNOT00000009061 2 1 1 60 5 137372071 137372089 TCTGTGGGCATTACCTTGG 60 137372029 137372047 GGTACAGTAGCAAACCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ak2 ENSRNOG00000000122 ENSRNOT00000000134 1 1 1 81 5 147195230 147195248 TTTGGAGACTCCTTCCTGC 59 147195292 147195404 GTCATCAAGCATTTCAGCCT 59 NA Rattus norvegicus 81 Defb19 ENSRNOG00000036898 ENSRNOT00000055409 1 1 1 119 3 148035216 148042474 GTTTCCAGTCTACAGGTGC 58 148042557 148042575 GCAATACAGCAGTAGTCCC 58 NA Rattus norvegicus 81 LOC361108 ENSRNOG00000009738 ENSRNOT00000012906 1 1 1 80 16 6440630 6444249 GATTGGGAAATCCACAACAG 57 6444291 6444310 GTCATCATCGTCATCATCGT 58 NA Rattus norvegicus 81 Fbxo34 ENSRNOG00000011704 ENSRNOT00000092161 3 1 2 117 15 24327811 24332207 CTTCTAACTGGCATCTGTTATGC 60 24332283 24332302 TTTCATGCAGTTAGCTCTGC 59 NA InUTR Rattus norvegicus 81 RGD1566073 ENSRNOG00000028320 ENSRNOT00000034681 2 1 1 131 19 30588246 30588796 AGTGAGTGTACAAGCAGAGG 60 30588134 30588152 ATCTTCTTCCCGAGCTTGG 60 NA Rattus norvegicus 81 Ereg ENSRNOG00000002771 ENSRNOT00000003716 2 1 1 81 14 18578902 18578920 CATTGACCGTGATTCTCGT 58 18577900 18578858 CGATTTCTGTACCATCTGCA 58 NA Rattus norvegicus 81 Lrrc4c ENSRNOG00000029798 ENSRNOT00000044595 1 1 1 91 3 86792843 86817259 CCCTAATGGAGAACAAGACTG 58 86817312 86817330 CTGCTGTGGATGTAAGGTC 58 NA InUTR Rattus norvegicus 81 F9 ENSRNOG00000003430 ENSRNOT00000004559 1 1 1 80 X 143118632 143118653 GATAATTTGTTCCTGCACTGAG 58 143118694 143122136 CCACATGGGAATGGAACTG 59 NA Rattus norvegicus 81 Slc9a3 ENSRNOG00000015159 ENSRNOT00000020711 1 1 1 80 1 31748873 31748893 GAAGTCCATGTCAATGAAGTC 57 31746509 31748831 GTACAAGACCACAGTCACC 58 NA Rattus norvegicus 81 Ptchd2 ENSRNOG00000026447 ENSRNOT00000036647 1 1 1 80 5 165073170 165081773 TCTACTAGCAAAGTCCAGGTC 59 165073110 165073130 CATGTCGTTATTGAAGGTCCG 60 NA Rattus norvegicus 81 Rtp4 ENSRNOG00000028895 ENSRNOT00000043660 2 1 1 80 11 80643747 80643768 AAGAACATTGTACCAGATGGTG 59 80640442 80643706 TCTGGAACACTGGAACCTG 59 NA Rattus norvegicus 81 Celf5 ENSRNOG00000004695 ENSRNOT00000061219 1 1 1 80 7 11116368 11116388 CTTCGGCAATATCATCTCCTC 59 11116430 11116825 TCAAAGCTCACGAATCCGA 59 NA Rattus norvegicus 81 Utp14a ENSRNOG00000005012 ENSRNOT00000048022 2 1 1 80 X 135112675 135112695 ACCTCCTGACTACAAGAACTC 59 135112734 135113502 TCTTCACTTCATCATCCAACTC 58 NA Rattus norvegicus 81 Pmpca ENSRNOG00000026775 ENSRNOT00000031607,ENSRNOT00000031622 2 2 2 80 3 3836883 3837388 CCGAGATGATTCATGAAGCTG 59 3837426 3837448 TCTTCCCTATGTTCTCTACAGGA 60 NA Rattus norvegicus 81 Pmpca ENSRNOG00000026775 ENSRNOT00000031607,ENSRNOT00000031622 3 2 2 80 3 3838275 3838293 CAACCTCCTACCACCACAG 60 3838337 3838479 TTTCTCGAACCTGTCGAGG 60 NA Rattus norvegicus 81 Fam53b ENSRNOG00000061348 ENSRNOT00000086830,ENSRNOT00000077956 2 2 2 93 1 204761787 204761805 GAAGATCGGTGTGAAACGG 59 204718389 204761731 GAAGGTCTGACAGTTCTGTG 58 NA Rattus norvegicus 81 Mark1 ENSRNOG00000002339 ENSRNOT00000080309,ENSRNOT00000003198 1 2 2 80 13 102843850 102845016 GAACCATCCTAACATAGTGAAACTG 60 102843794 102843813 CCACTTGCGTATTCCATGAC 59 NA Rattus norvegicus 81 Camk1 ENSRNOG00000021781 ENSRNOT00000029728 1 1 1 80 4 145294774 145295768 TTACACAAGATCAAGCACCC 58 145294713 145294732 CTGCATGATGAGGTAGAGGT 59 NA Rattus norvegicus 81 Tmem262 ENSRNOG00000047431 ENSRNOT00000073942 3 1 1 82 1 221444337 221444459 CTTTGACCATCCTGATCCTC 58 221444503 221444522 CTCCTCTCGGTAATTGATGG 58 NA Rattus norvegicus 81 Pgm2l1 ENSRNOG00000017079 ENSRNOT00000022963 1 1 1 80 1 165272032 165272669 CAGAACTTCAGGAGAATGGTC 59 165272711 165272729 AATCAAACATCCACCACCC 58 NA Rattus norvegicus 81 Olr856 ENSRNOG00000057199 ENSRNOT00000084932 2 1 1 60 5 137725484 137725503 CTATAACATTGCCACAGCCT 58 137725443 137725464 CACATCCTTGTTCCTTAGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chmp3 ENSRNOG00000007356 ENSRNOT00000010253 2 1 1 80 4 99489422 99492372 AAAGAGATGATGAAGGCTGGA 59 99492411 99492432 TTCCATTTCCTCTTGATCATCC 58 NA Rattus norvegicus 81 Ppid-ps1 ENSRNOG00000055834 ENSRNOT00000089469 2 1 1 60 20 2443537 2443556 AAGAAGGCACAGGAGATAGC 60 2443496 2443515 TGACTTTAAGCAGTTCTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mei1 ENSRNOG00000007003 ENSRNOT00000009428 2 1 1 80 7 123310684 123314889 CAGACCTCTGTATTGAAGTCCT 59 123314929 123314948 ACTCATTCAGTAGGCACTGG 60 NA Rattus norvegicus 81 Fcar ENSRNOG00000027855 ENSRNOT00000087826,ENSRNOT00000029621 3 2 2 85 1 73251864 73251887 GGATGTTATCAGTGTCAGTATAGG 58 73234283 73251820 TCATACAAGCCTGTCACCA 59 NA Rattus norvegicus 81 Efcab5 ENSRNOG00000022536 ENSRNOT00000031618 2 1 1 80 10 63056255 63056273 ACTCTAGATGATGCTCCGT 58 63056314 63057133 TTCATCCACTACTGTAAAGCTG 58 NA Rattus norvegicus 81 LOC100910887 ENSRNOG00000050926 ENSRNOT00000072979 1 1 1 60 13 9480121 9480140 ATCATTCTGTTGACTCTGCT 57 9480160 9480181 TTCGGAGGAAGAAATACATAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cox5b ENSRNOG00000016660 ENSRNOT00000022487 2 1 1 80 9 43260356 43260374 CTACTGATGAGGAGCAGGC 60 43260415 43260598 GCATATTGTATGGATCCAGTCC 59 NA Rattus norvegicus 81 Olr162 ENSRNOG00000047589 ENSRNOT00000075826 3 1 1 60 1 169683497 169683517 CAGCCTATGTACCATTTCCTG 59 169683536 169683557 TAGTAGTTGCCAGACCTATGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpg1 ENSRNOG00000060278 ENSRNOT00000078938 3 1 1 76 6 123034538 123034556 TCCAGAGAAGAGGATGAGG 58 123034596 123042390 TAACTGACTCCTCGACTGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Zdhhc7 ENSRNOG00000017342 ENSRNOT00000023405 3 1 1 80 19 52734757 52735258 AATGACGAAACTGAGATCGAG 58 52734697 52734715 AGACTTCATCCCTTCCCAC 59 NA Rattus norvegicus 81 Hs6st2 ENSRNOG00000030880 ENSRNOT00000040165 2 1 1 80 X 138714263 138714282 TCAAACTTCAACTCAGGTGC 59 138678483 138714223 ATAATGGAAGTTCTTCCCACTC 58 NA Rattus norvegicus 81 Rab33a ENSRNOG00000006698 ENSRNOT00000008868 1 1 1 80 X 135349203 135359633 AAGATCAAGGTTCAGGTGTG 58 135359675 135359694 CACATTGCGGTAATAATGCT 57 NA Rattus norvegicus 81 Hif3a ENSRNOG00000017198 ENSRNOT00000023490 1 1 1 80 1 78989749 78990021 GAGCATCCACACTTTGCTG 60 78989687 78989705 CACAGATAGCCTCCAGTCC 59 NA Rattus norvegicus 81 Tmx1 ENSRNOG00000057934 ENSRNOT00000087540 3 1 1 86 6 92869782 92869800 TCATGGTTTGGTCCAAGCT 60 92871194 92871297 ATAGCTGTGGCTAGTCCTG 59 NA Rattus norvegicus 81 Pcyt1a ENSRNOG00000001762 ENSRNOT00000002403 3 1 1 84 11 71552843 71552861 GAAGTGGGAGGAGAAGTCC 59 71551509 71552795 TTTCAGCATGTGCTTCAGC 60 NA Rattus norvegicus 81 Drd2 ENSRNOG00000008428 ENSRNOT00000045944,ENSRNOT00000083419 1 2 2 80 8 53735425 53736626 GGACTCAACAATACAGACCA 57 53736667 53736687 GTAGAATGAGACAATGGAGGA 57 NA Rattus norvegicus 81 Cxcl1 ENSRNOG00000002802 ENSRNOT00000003778 3 1 1 80 14 18745000 18745137 CAAACCGAAGTCATAGCCAC 59 18744939 18744959 GACAATCTTCTGAACCATGGG 59 NA Rattus norvegicus 81 Ap5m1 ENSRNOG00000014148 ENSRNOT00000018972 1 1 1 80 15 25947678 25947789 GGATTATTGGCCAGAAGTTCC 59 25947830 25947849 TGTTATGGCCCTGAACTCTG 60 NA Rattus norvegicus 81 Olr1501 ENSRNOG00000031966 ENSRNOT00000041085 1 1 1 60 10 60728353 60728372 ACTTGTCCTTCAATGACCTC 58 60728395 60728413 ATGTTCAGCAGCAACTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562987 ENSRNOG00000018676 ENSRNOT00000025198 2 1 1 108 18 70982163 70982184 TTCCTGGAGCCATACATATACC 59 70982253 70982736 TATCTGCACCCTTGCAGTC 60 NA Rattus norvegicus 81 Gpr101 ENSRNOG00000027658 ENSRNOT00000033219 3 1 1 111 X 140301792 140303541 CAGCAACAGATAGTGTGCA 58 140301699 140301717 TTGAGTACTGTTGGTGCAG 58 NA InUTR Rattus norvegicus 81 Rnase9 ENSRNOG00000029516 ENSRNOT00000040616 1 1 1 64 15 27965962 27968275 CATCCCACTTCTGTGAGCA 60 27965916 27965934 GCACTTGATGACCAGAGAC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ckm ENSRNOG00000016837 ENSRNOT00000022895 1 1 1 80 1 80329243 80329262 ATCTCCATGGAGAAAGGAGG 59 80329302 80329999 GAAGATCTCCTCAATCTTCTGC 59 NA Rattus norvegicus 81 Tm6sf1 ENSRNOG00000019662 ENSRNOT00000063873,ENSRNOT00000078500 1 2 2 80 1 143687401 143687419 TGATCTGCTACTGGGATGG 59 143687462 143689811 TGTAACTTTCCTCCCATGCT 59 NA Rattus norvegicus 81 Dusp13 ENSRNOG00000013112 ENSRNOT00000067781 3 1 2 116 15 2741194 2741968 TGAACCACAAGGGATGGAC 60 2742048 2742066 AGCAATCGCTGTAGTGAGG 60 NA InUTR Rattus norvegicus 81 Tprg1l ENSRNOG00000046227 ENSRNOT00000075423,ENSRNOT00000080686 1 2 2 188 5 171459137 171459155 GAGTACTTCGTGTTCCGAC 58 171458898 171458920 GAAGTCATATTTGCAGATGAGC 58 NA Rattus norvegicus 81 Bora ENSRNOG00000024798 ENSRNOT00000039344 2 1 1 80 15 83457570 83457588 CATCGGCTATCTGTTCACC 58 83457631 83460104 TAAACTTCCTGTGCTCTGAC 58 NA Rattus norvegicus 81 Cd48 ENSRNOG00000004737 ENSRNOT00000006306 3 1 1 81 13 90131448 90134240 CCATGGAAGTATACGATCTTGTG 59 90134281 90134299 CTCAGGTGACAGGAGTCAG 59 NA Rattus norvegicus 81 Olr819 ENSRNOG00000005469 ENSRNOT00000007235 3 1 1 84 4 72637897 72637916 TATACAGCCTGAGGAATGCT 58 72637962 72638132 ATGCACCATATCAATTGGGA 57 NA Rattus norvegicus 81 Acsm4 ENSRNOG00000014726 ENSRNOT00000034610 1 1 1 80 1 189448299 189448319 TCATATCCTATCACGACCCTG 59 189448356 189450670 GAATTGATACCTCTTAAGGTCCTG 59 NA Rattus norvegicus 81 RGD1560212 ENSRNOG00000057774 ENSRNOT00000082419 1 1 1 127 18 76728631 76730305 GTCTTAAAGCAAACGGTGCT 60 76730395 76730413 ATGTTCATCAGGTCGTCCG 60 NA InUTR Rattus norvegicus 81 Hsdl1 ENSRNOG00000015576 ENSRNOT00000020859 1 1 1 80 19 52216100 52216118 ATCGTCACAGTGTCTTCCG 60 52215896 52216056 GTCCAGATAGGCCTTGGAC 60 NA Rattus norvegicus 81 Olr609 ENSRNOG00000050679 ENSRNOT00000051968 1 1 1 60 3 76288857 76288876 GCCCAAACATAATCAACCAC 58 76288816 76288837 GAACAGGACAAAGAAAGAATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr609 ENSRNOG00000050679 ENSRNOT00000051968 3 1 1 60 3 76288606 76288628 GGGATCATACTCCTTCTCTACTG 59 76288568 76288587 CTTTGACCACAAGCCATGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909831 ENSRNOG00000059263 ENSRNOT00000046197 2 1 1 60 3 74749809 74749829 CCTGATCATCCTTACAATGGT 58 74749769 74749789 TCTGAGAAAGAAGTACATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grm8 ENSRNOG00000021468 ENSRNOT00000056996 1 1 2 80 4 55010448 55011283 GATGACATCAGGAGGATATTGG 58 55010389 55010408 CCAACTATCAGAGCCAATCC 58 NA Rattus norvegicus 81 Vom1r99 ENSRNOG00000053093 ENSRNOT00000085001 1 1 1 60 4 121969356 121969377 CACACTGATTCTCACATAAGGG 59 121969317 121969335 TGACTGAGATTCCAATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim55 ENSRNOG00000012723 ENSRNOT00000017125 2 1 1 80 2 104439192 104440412 TTCTAGAGAAGAGGAAGATGAAGAC 60 104440446 104440468 TCTTCTACTTCTACTGCATCCTC 59 NA Rattus norvegicus 81 Zfr2 ENSRNOG00000020416 ENSRNOT00000061132 2 1 1 80 7 11342115 11342135 GAATGCAGCTTCAATGATAGG 58 11341449 11342074 AACTTTCTTCCTGTACTGCA 57 NA Rattus norvegicus 81 Lyrm1 ENSRNOG00000024530 ENSRNOT00000033673 1 1 1 80 1 189683244 189683266 CAGTGTATAGACGAATGTACAGC 59 189683306 189684961 GGGTAGATGGATCGGTCTG 59 NA Rattus norvegicus 81 Klhdc4 ENSRNOG00000046599 ENSRNOT00000065472 3 1 1 61 19 54652215 54652236 AAGATGGAGAAGAAAGTGTCCA 60 54652025 54652043 GTAAACGAGGAGTCTCGGG 60 NA DesignNoJunction Rattus norvegicus 81 Wsb1 ENSRNOG00000012929 ENSRNOT00000017949 3 1 1 81 10 66597356 66602863 CAACGAGAAAGAGATCGTGAG 59 66597295 66597313 ACCACCACATTTCTTGTCG 58 NA Rattus norvegicus 81 Ifitm1 ENSRNOG00000004273 ENSRNOT00000005645 3 1 1 82 1 213766958 213766976 GTCCCTGTTCAATACGCTC 58 213767022 213767530 TCCTGTCCCTAGACTTCAC 58 NA Rattus norvegicus 81 Slk ENSRNOG00000011339 ENSRNOT00000015495 1 1 1 80 1 267409169 267409189 AAGGAGTTAGATGAGGAGCAC 59 267409230 267412471 TTCCTCCAGTGTCTTCTTCC 59 NA Rattus norvegicus 81 Htr2a ENSRNOG00000010063 ENSRNOT00000013408 3 1 1 100 15 56669373 56731589 ATCTGTAGGTATATCCATGCCA 58 56731650 56731668 GAACAAAGTTGTCATCGGC 58 NA Rattus norvegicus 81 Psg16 ENSRNOG00000042250 ENSRNOT00000088925,ENSRNOT00000058060 3 2 3 80 1 79077669 79077687 ACACCCTACGAACTCTGAG 59 79077731 79078833 TTGAGGAAAGGGAGGTGTC 59 NA Rattus norvegicus 81 Tlr11 ENSRNOG00000032368 ENSRNOT00000039925 3 1 1 88 15 27178023 27179263 TGCTCAAAGAATCAATGCCA 59 27179312 27179332 GTTAAGGCTCACCAAAGTCAG 59 NA Rattus norvegicus 81 Ropn1l ENSRNOG00000042781 ENSRNOT00000065312,ENSRNOT00000090540 2 2 2 81 2 84528505 84528523 GTGGCTACACAGAAGACTG 58 84526369 84528463 CATATTGTTTGTGGCTACACTG 58 NA Rattus norvegicus 81 Cxxc1 ENSRNOG00000014614 ENSRNOT00000020472 2 1 1 80 18 70196608 70196750 ATGCTAAGTATGAGAGCCAGAC 60 70196919 70196937 CATCACAGAAGAGTCGGGT 59 NA Rattus norvegicus 81 Inpp5d ENSRNOG00000017020 ENSRNOT00000051338 2 1 1 80 9 94826066 94826084 AGCATGAGAACCGGATCAG 60 94826128 94828382 CAGCTCCTTTGTTTCCCAG 59 NA Rattus norvegicus 81 Senp17 ENSRNOG00000050153 ENSRNOT00000049542 1 1 1 60 4 160803429 160803447 GGACCAGAACCATCAAGGA 59 160803387 160803405 TTCCAGGCTTCTGAAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnase4 ENSRNOG00000025625 ENSRNOT00000041495 1 1 2 60 15 28018086 28034119 AGGCACTTTCTAGGTGACG 59 28034142 28034161 CAACAAGAGCAGAAGCAAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Psmc1 ENSRNOG00000003951 ENSRNOT00000005329 3 1 1 81 6 124133263 124135311 GACATCAAGGCAATCTGCA 59 124135353 124135374 TCTTGAAGTCTTCGTTTGTCAC 59 NA Rattus norvegicus 81 Kcnc3 ENSRNOG00000019959 ENSRNOT00000027062 2 1 3 116 1 100600605 100600623 CAATGACTTGGGTGTCCTG 59 100601405 100601423 TCTTCTGGAGACATGGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Olr636 ENSRNOG00000051516 ENSRNOT00000085537 1 1 1 60 3 76843097 76843117 TGGACATTTGCTATACCTCCT 59 76843138 76843157 CTTCTCACAAGCAGATCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc141 ENSRNOG00000012580 ENSRNOT00000037015 2 1 1 80 3 63912917 63914456 TAAGGAAGGTGGAAATGTCAG 58 63912857 63912877 ATTCAGAAGGACTAGAACCGA 58 NA Rattus norvegicus 81 Spa17 ENSRNOG00000010934 ENSRNOT00000014866 2 1 1 114 8 40071215 40071234 GCTTCTATAACAACCACGCA 59 40067255 40069304 GTAGACTCCTCGAAGGGAG 58 NA Rattus norvegicus 81 LOC102551504 ENSRNOG00000049274 ENSRNOT00000052217 2 1 1 60 1 67917880 67917899 CAATCAGCCCTAATCACTCC 58 67917918 67917940 CCAATGTACTTGATGACTCTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1593 ENSRNOG00000003521 ENSRNOT00000004674 2 1 1 60 13 92225284 92225304 ATTCGCTTGGAAATTCAGAGG 59 92225323 92225344 GCAATGTATCTGTCAATAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Peli2 ENSRNOG00000012363 ENSRNOT00000016629 1 1 1 91 15 25075943 25077623 ATATTCCTCGGCGAGAAGG 59 25077678 25077696 CTTGGGTGCATTACCAGGA 60 NA Rattus norvegicus 81 Diexf ENSRNOG00000004789 ENSRNOT00000006395 3 1 1 80 13 111848921 111849443 CTTCTACGACAGGGTTTCCA 60 111847949 111847970 TCAGAATGTGAAGAATCTGAGC 59 NA Rattus norvegicus 81 Olr414 ENSRNOG00000033799 ENSRNOT00000052047 2 1 1 60 3 20882797 20882817 TTCTCACTAACATAGTTGCCC 58 20882757 20882775 ACACAGAAGGACAGTCGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psd3 ENSRNOG00000013884 ENSRNOT00000068629,ENSRNOT00000068177,ENSRNOT00000041994,ENSRNOT00000067886 1 4 4 80 16 23752836 23758926 ATTATCCCAGGAGGAACAGC 59 23758969 23758987 TATGAGCGATGTTCAGCCA 59 NA Rattus norvegicus 81 Lrsam1 ENSRNOG00000022312 ENSRNOT00000060186 2 1 1 80 3 11974957 11974975 GGCCTGCAACATGAAATCC 60 11974390 11974914 CTTGGGTGGTTTCAACTCTG 59 NA Rattus norvegicus 81 Hacd1 ENSRNOG00000043192 ENSRNOT00000063911 1 1 1 80 17 81187413 81187603 CTTTGCTTGAGGTAGTCCAC 59 81187276 81187294 TTCGTGAACTCACTTGGAC 58 NA Rattus norvegicus 81 Smpdl3a ENSRNOG00000000815 ENSRNOT00000001081 3 1 1 81 20 40797213 40797600 AAGGAGAAGGTATACGTCATAGC 60 40797641 40797659 AGTACTGCCTCATTGCTGG 60 NA Rattus norvegicus 81 Wnt10b ENSRNOG00000061238 ENSRNOT00000081468 3 1 1 296 7 140452884 140453010 TCGGGCTCTAAGCAATGAG 60 140450790 140450808 ATGGAGAAGGAGAACGCAC 60 NA DesignNoJunction Rattus norvegicus 81 Mrpl42 ENSRNOG00000042740 ENSRNOT00000066322 1 1 1 80 7 36588051 36588069 CATTGACGTCTGATGGCAG 59 36583691 36588007 GAGGGATAGGTTGGGTGTG 60 NA Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000035838,ENSRNOT00000089869,ENSRNOT00000078658,ENSRNOT00000089788,ENSRNOT00000078538 3 5 6 60 20 3306111 3306129 CCTCTGTAAGACTGTGCCT 59 3306153 3306171 CATGGCCACTAGGTCAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab4b ENSRNOG00000001500 ENSRNOT00000002052 1 1 1 80 1 83984980 83984998 CAAGAAGGACCTGGATCCT 58 83983449 83984937 AGGAACATCAGCTCATTCTC 57 NA Rattus norvegicus 81 Cass4 ENSRNOG00000021560 ENSRNOT00000035245 3 1 1 120 3 170432964 170432982 AAGAGAAGCTGAGTCCCAC 59 170433066 170434386 GTTAGGTGACTTCTGCCCA 59 NA Rattus norvegicus 81 Pqlc1 ENSRNOG00000059215 ENSRNOT00000089389 1 1 1 80 18 76770332 76776396 TACGGATACTCTTCTGGTTTGG 60 76776434 76776455 GTAGCATCGTAAGGATCATGAC 59 NA Rattus norvegicus 81 Arl8b ENSRNOG00000055860 ENSRNOT00000080663 3 1 1 80 4 140870971 140870992 TGAAGATATGATACCCACCGTG 60 140871028 140872081 CCTATGTCCCAGATCTTTATTGTG 59 NA Rattus norvegicus 81 Dcp2 ENSRNOG00000045895 ENSRNOT00000073952 1 1 1 80 18 35645967 35645986 ACATCATTCCAGGAGTTCCA 59 35646026 35646141 TGGAGAACCACTCAATATTCCT 59 NA Rattus norvegicus 81 Olr386 ENSRNOG00000056884 ENSRNOT00000084162 2 1 1 60 1 64492046 64492065 GTTTGCCTGGATGTTGTCTC 60 64492088 64492106 GCAGAAGAAGTGGTTGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rufy2 ENSRNOG00000000390 ENSRNOT00000037409 3 1 1 80 20 27237601 27238196 AAACAGACAACTCAACAGCA 58 27237540 27237560 TCGATCAGCTTAGTGTTTGAC 59 NA Rattus norvegicus 81 H2afz ENSRNOG00000010306 ENSRNOT00000013919 2 1 1 94 2 243106071 243106090 AATCTAGGACAACAAGCCAC 58 243106147 243106508 CAACTCAAGTACCTCTGCG 58 NA Rattus norvegicus 81 LOC100360002 ENSRNOG00000042869 ENSRNOT00000064931 3 1 1 60 10 89187370 89187391 CAACTCTTATACCCTCACAGGT 59 89187331 89187349 AGCAATGCCTCCATATGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clstn1 ENSRNOG00000016398 ENSRNOT00000045063 2 1 1 80 5 166596163 166596182 GTCTGTACACCTGCAAAGAG 59 166596225 166596438 TGGAGCTTGTTTGGATCTG 58 NA Rattus norvegicus 81 RGD1304884 ENSRNOG00000017431 ENSRNOT00000023478 2 1 1 80 19 53729955 53729974 GAACATGAAAGGCTTCTTCG 58 53730017 53730869 TTGTTCTCATCCTCCTCGT 58 NA Rattus norvegicus 81 Zscan21 ENSRNOG00000039234 ENSRNOT00000001810 3 1 1 83 12 19268714 19269439 GACTGCAGGTCTCATCTCC 60 19269485 19269504 TGCTTAAGGACTCCATTGCA 60 NA Rattus norvegicus 81 Ssuh2 ENSRNOG00000005734 ENSRNOT00000007591 1 1 1 80 4 144314142 144314421 TTTCAGCCTGTAACCAACCA 60 144314081 144314100 CACCTGGACCTTCATATCCC 60 NA Rattus norvegicus 81 RGD1560225 ENSRNOG00000017146 ENSRNOT00000058382,ENSRNOT00000090369 2 2 2 80 18 77291672 77291690 CACTATGAGACGGAAGGCA 59 77275847 77291630 CAAGTAACCATGTAGCTGCAC 60 NA Rattus norvegicus 81 Dcbld1 ENSRNOG00000000407 ENSRNOT00000000462 2 1 1 80 20 33386134 33386154 GCGATTTGAACATTGAGTCCA 60 33386192 33420008 AATAGGGACCATACTGATCTGTC 59 NA Rattus norvegicus 81 Ophn1 ENSRNOG00000026573 ENSRNOT00000076551,ENSRNOT00000034772 2 2 2 81 X 68352913 68355144 ACAGGAGAAATGGGCTCTG 59 68352850 68352868 TGTCATGGTGAGTGTCCTG 59 NA Rattus norvegicus 81 Tmem132b ENSRNOG00000038406 ENSRNOT00000058492 1 1 2 80 12 36313965 36313984 GTGAACTCTTCGTCTCTGAG 58 36269514 36313923 AAACTTCTGTGTCCATGGTG 58 NA Rattus norvegicus 81 Ift122 ENSRNOG00000010952 ENSRNOT00000086549,ENSRNOT00000014733 2 2 2 80 4 147788499 147788666 ATTACGTGGTGGTAGGCTG 60 147788708 147788728 CCTTGTAAAGTCCGTGAACTG 59 NA Rattus norvegicus 81 Fam109b ENSRNOG00000042522 ENSRNOT00000066149 1 1 1 255 7 123574150 123574168 CTTTGCAGATCCAGAGGCT 60 123576333 123576351 ACACTCCTCTTGTTCAGCT 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Hsf2 ENSRNOG00000000808 ENSRNOT00000001059 2 1 1 80 20 38945368 38945535 GCTAAATATGTATGGCTTCCG 57 38945577 38945595 AATTCAACAGGGCCATCTC 58 NA Rattus norvegicus 81 Prkcq ENSRNOG00000019057 ENSRNOT00000025901 1 1 1 80 17 71024713 71029232 TCAAGTGTGATGCATGTGG 59 71024651 71024672 GCTTCTGGTTTATACCACAGAG 59 NA Rattus norvegicus 81 Mesdc2 ENSRNOG00000012366 ENSRNOT00000055583 2 1 1 80 1 146041052 146041780 CTATGATGTTCAGAGGTTCATCG 59 146041820 146041838 TTGATCTCCCAGGCATAGC 59 NA Rattus norvegicus 81 Ttyh2 ENSRNOG00000024578 ENSRNOT00000004081 3 1 1 80 10 103237188 103237209 TTCTGCTAAACAACTCTGAGAC 59 103237250 103238417 CCAAGTAGTCCTTGTGCAG 58 NA Rattus norvegicus 81 Stk4 ENSRNOG00000013529 ENSRNOT00000066657 1 1 1 80 3 160493257 160493276 GGATTTCGTGAAGCAGTGTC 60 160493319 160494358 TTAACAAACGGGTGCTGGA 60 NA Rattus norvegicus 81 Cndp2 ENSRNOG00000015591 ENSRNOT00000021400 1 1 1 80 18 81525720 81525740 CCACATTGACTTCGATATGGA 58 81524830 81525678 AGGATGTCTTTCTTGCAGC 58 NA Rattus norvegicus 81 Olr550 ENSRNOG00000048383 ENSRNOT00000051768 3 1 1 60 3 74997217 74997238 CCTCTAATTTACAGCCTGAGGA 59 74997178 74997198 TACAAATTGACCTCTTGGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stap1 ENSRNOG00000002014 ENSRNOT00000002760 3 1 1 80 14 23589475 23589495 CTGGGAAATATGATCCTGAGG 58 23584206 23589435 TCTTGGCATTTCTATCTCCTG 58 NA Rattus norvegicus 81 Celsr3 ENSRNOG00000053889 ENSRNOT00000084220 3 1 1 80 8 117627108 117627126 TTTCCTCCCAGTTCCTTCG 59 117627170 117627436 CACAGTTGCAAACGAGAGG 60 NA Rattus norvegicus 81 Tkt ENSRNOG00000016064 ENSRNOT00000021862 2 1 1 80 16 6628173 6629107 GGATCACAGGGATTGAAGAC 58 6629148 6629168 TCTCCTGGATAATCTGCTCAG 59 NA Rattus norvegicus 81 Emc8 ENSRNOG00000017654 ENSRNOT00000023855 2 1 1 80 19 54238987 54245487 CGCTCACCCTAATTGACTC 58 54238925 54238944 CCTTCACACGTTCATTAGCT 58 NA Rattus norvegicus 81 Tcerg1l ENSRNOG00000016737 ENSRNOT00000031734 3 1 1 80 1 210588466 210588485 CTGAAAGCAGTGATGGATCC 59 210570464 210588424 AGCTTTCAGTCCTGTTCCTC 60 NA Rattus norvegicus 81 Polq ENSRNOG00000002471 ENSRNOT00000063995 3 1 1 80 11 66615429 66616876 GCAGTCTGAAATGAGTCCT 57 66615367 66615386 TGAAGGTACTCCATCCTCTC 58 NA Rattus norvegicus 81 Ubald1 ENSRNOG00000027368 ENSRNOT00000033695 1 1 1 81 10 11341495 11341998 ACCAGATGATGTGCACTCC 60 11342043 11342061 TTGAGACGGGAGAACATGG 59 NA Rattus norvegicus 81 Suco ENSRNOG00000026542 ENSRNOT00000075936,ENSRNOT00000087323,ENSRNOT00000036483,ENSRNOT00000084058 1 4 4 80 13 79746455 79746474 ACAACTGACCAACATGACAC 59 79745507 79746412 TGACGATCTGAAACCTCCC 59 NA Rattus norvegicus 81 Kmo ENSRNOG00000003709 ENSRNOT00000005005 1 1 1 80 13 93691110 93692401 GGAAGATCAGATCGTGTCC 57 93692444 93692463 GGAATTGCAGACTTCTTTCC 57 NA Rattus norvegicus 81 Pnkd ENSRNOG00000014806 ENSRNOT00000020049,ENSRNOT00000046229 3 2 3 81 9 81628656 81628675 AGCTACCTCATCATCGACAC 59 81628719 81629738 CAATAGAAGCCTGCACAGC 59 NA Rattus norvegicus 81 Mturn ENSRNOG00000010205 ENSRNOT00000013620 1 1 1 60 4 84862612 84870513 CAAGTCCTTCAGACCTTTGC 59 84870534 84870554 GTACTCTTCAAATGCGTCGTC 60 NA DesignRelaxed Rattus norvegicus 81 Zswim8 ENSRNOG00000009596 ENSRNOT00000063831 2 1 1 80 15 3765454 3765552 AGAAGAAACATACAGGCATGG 58 3765394 3765413 TTCGGCTTAAGGTAGGAGAG 59 NA Rattus norvegicus 81 Bhlhe22 ENSRNOG00000021745 ENSRNOT00000033940 3 1 1 61 2 102686897 102686915 GTGTGCCCTATTCAACAGC 59 102686940 102686958 TTTAAGGCTTCTCCGTGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pbx3 ENSRNOG00000022162 ENSRNOT00000082036,ENSRNOT00000029600 2 2 2 80 3 13247869 13270128 ATCACAGTATCACAGGTATCCA 59 13247810 13247829 CTCCTCTTGAAATTTGCCGA 59 NA Rattus norvegicus 81 LOC681282 ENSRNOG00000034107 ENSRNOT00000041750 3 1 1 114 7 118024224 118024556 GAAACAGAAAGAGCAGGCTG 60 118024633 118024651 CATCTGAGCCCTGTAGTCC 59 NA Rattus norvegicus 81 Nfe2l3 ENSRNOG00000010886 ENSRNOT00000014826 3 1 1 80 4 81226141 81231337 GAGGCTAGGAATGAGAGCC 59 81231380 81231399 CTGTGATGAAAGGAGCTGGA 60 NA Rattus norvegicus 81 Tas2r107 ENSRNOG00000005646 ENSRNOT00000007453 2 1 1 60 4 165773544 165773564 TTGTATCCCTGATTACCTGCT 59 165773504 165773522 ATTTGCCTGATGTGTCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017662.1 ENSRNOG00000039404 ENSRNOT00000060386 1 1 1 87 15 29810628 29810777 TCTTAGTGTTTGGAGGAAGCA 59 29810561 29810579 TTCACAGTCAGAGAAGCCC 59 NA Rattus norvegicus 81 Dnajb5 ENSRNOG00000000130 ENSRNOT00000000142,ENSRNOT00000080082 1 2 2 100 5 58394293 58396482 AAGTTTCGAAACAAGGAGCC 59 58396545 58396563 ATCTCATCTTCGTTGGCCC 60 NA Rattus norvegicus 81 Cntn5 ENSRNOG00000007038 ENSRNOT00000009418 1 1 1 80 8 8422349 8524609 GGAGACTAATCCTGTGCCC 60 8286658 8286680 CATATGAAGTAGAAAGGCCAGAG 59 NA Rattus norvegicus 81 Trappc3 ENSRNOG00000010550 ENSRNOT00000014383 3 1 1 83 5 144292857 144293089 GACAGAATGGGCTATAACATTGG 60 144293130 144293150 CCGAAAGTCATGACATCTTCC 59 NA Rattus norvegicus 81 Cd5l ENSRNOG00000023068 ENSRNOT00000057022 1 1 1 80 2 186691083 186691104 GCTCAATGTACGCTAAATTACG 58 186691145 186692597 ATTGTCTGGGTTCTCACAC 57 NA Rattus norvegicus 81 Gid8 ENSRNOG00000010180 ENSRNOT00000013609 3 1 1 80 3 176219833 176221045 TACTTAGTCACAGAGGGCT 57 176221089 176221107 TTCTAGGTCCACACTTGGT 58 NA Rattus norvegicus 81 Hbe1 ENSRNOG00000029286 ENSRNOT00000043719 2 1 1 81 1 169005143 169005161 AAAGAGCCTCATCAATGGC 58 169004962 169005098 CACAACGAGAAGTCTTCCC 58 NA Rattus norvegicus 81 Ambp ENSRNOG00000006889 ENSRNOT00000009248 2 1 1 80 5 78978284 78980433 GTCCACTTCATTTGCAAGAG 57 78978223 78978241 CCAGTTATGAGTGGCTCAC 58 NA Rattus norvegicus 81 Pex2 ENSRNOG00000008748 ENSRNOT00000011579 1 1 1 81 2 98265925 98267937 AAGGAAAGACAGCATCAGAG 58 98267980 98267999 CTGACTTATCCTCAGCACTC 58 NA InUTR Rattus norvegicus 81 Kalrn ENSRNOG00000001706 ENSRNOT00000049292,ENSRNOT00000016340 2 2 2 80 11 69834617 69837669 GAACAATAGTAAGAGGGATGGG 58 69837709 69837728 GCAATGGATATGGTATCGGG 58 NA Rattus norvegicus 81 Nek2 ENSRNOG00000004487 ENSRNOT00000006235 3 1 1 80 13 110518050 110518069 TCAAGTTGAAGGAAAGGCAG 58 110518112 110520828 CACGTTCTTTCTGCTCCAG 59 NA Rattus norvegicus 81 Hck ENSRNOG00000009331 ENSRNOT00000012432 3 1 1 80 3 148610372 148610393 ACTTTCTCAAGAGTGAAGAAGG 58 148610434 148616219 CCATGCCCTCTGAAATCTG 58 NA Rattus norvegicus 81 LOC685438 ENSRNOG00000050981 ENSRNOT00000064787 2 1 1 80 12 21362115 21362134 TTCCTGAACAGAATCTGGCT 59 21361759 21362075 CTAATGAATTCCCAGTGTGCAG 60 NA Rattus norvegicus 81 Tyw1 ENSRNOG00000024352 ENSRNOT00000038092 3 1 1 80 12 29866227 29869546 GAAATCAGGAACCTCACACC 59 29866166 29866184 GTCGATCTTCTTCAGGCTG 58 NA Rattus norvegicus 81 Nol3 ENSRNOG00000015588 ENSRNOT00000020908 2 1 1 156 19 37235329 37235347 CAAACTGTGAGCATGCCAG 60 37235602 37235620 CTTCCTCTGAAGCTCTGGG 60 NA DesignNoJunction Rattus norvegicus 81 Tfb2m ENSRNOG00000002695 ENSRNOT00000003618 2 1 1 80 13 97837035 97837053 CTTAAAGCTGGTGCCAGAG 59 97834300 97836993 CGCATTCTTCCTTAAGGACTC 59 NA Rattus norvegicus 81 Fam105a ENSRNOG00000012109 ENSRNOT00000067638 2 1 1 80 2 80391257 80391276 CTCTTCTGTCAGCTACCCTC 59 80391113 80391217 GATAGCCAATCCACCATTTCAG 60 NA Rattus norvegicus 81 Pcdhga11 ENSRNOG00000027232 ENSRNOT00000026969 1 1 1 60 18 30905503 30905523 ACGGTTGAAGATGTGAATGAC 59 30905544 30905563 CTGAGTTGATGGAAGAGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Banp ENSRNOG00000019140 ENSRNOT00000025894 1 1 1 80 19 54802028 54803506 TCATTAGCAACGCTGTTCC 59 54803549 54803568 CTTCATTGTGACTGTCGTCC 59 NA Rattus norvegicus 81 Map3k19 ENSRNOG00000003952 ENSRNOT00000005244 2 1 1 83 13 44527141 44529672 CTATGGCACAGTATATTGTGGG 59 44527079 44527097 AGTTTGTCGGTCGAATCCA 59 NA Rattus norvegicus 81 Ns5atp4 ENSRNOG00000027533 ENSRNOT00000031887 1 1 1 60 3 35542370 35542389 GTACTTGCGTTATCAGGAGG 58 35542329 35542347 CCCAATTCGTGCTTTGACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd5 ENSRNOG00000020872 ENSRNOT00000086669,ENSRNOT00000054812,ENSRNOT00000065376,ENSRNOT00000082482 3 4 4 81 1 226772455 226773056 TTATCCAGCTCTGGAAGGG 59 226772392 226772411 CACTTGCAGGTCATAGTCAC 59 NA Rattus norvegicus 81 Ctdsp1 ENSRNOG00000015295 ENSRNOT00000080062 1 1 5 60 9 81675983 81676001 CCTCATACGTCTTCCATCC 57 81676467 81676486 CTCATGTTGTCAAACCACGA 59 NA DesignNoJunction Rattus norvegicus 81 Ctdsp1 ENSRNOG00000015295 ENSRNOT00000086282,ENSRNOT00000080062,ENSRNOT00000090832 2 3 5 60 9 81675911 81675932 GAAACTACGTAAAGGACCTGAG 59 81675953 81675971 TCTAAGATTAGCACCCGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pmf1 ENSRNOG00000019620 ENSRNOT00000035383 2 1 1 80 2 187757651 187771695 GGGCAAGAGCTATGAGAGG 60 187757589 187757607 TCATAGATCCACCGTGTCG 59 NA Rattus norvegicus 81 Tubal3 ENSRNOG00000028750 ENSRNOT00000036821 3 1 1 81 17 69982765 69982786 TTCTTTCATGAGACAAGCACTG 59 69977012 69982723 GGACGCCATCTATAACGGT 59 NA Rattus norvegicus 81 Mug2 ENSRNOG00000033245 ENSRNOT00000072465 2 1 1 80 4 154267796 154268648 GAAAGTTCACTCCCAGATCCT 60 154268688 154268708 TCTTCCTTGCTCTATGGTCTC 59 NA Rattus norvegicus 81 AABR07061345.3 ENSRNOG00000057968 ENSRNOT00000080096 3 1 1 60 4 117751056 117751077 TATGTGGCTAAATGTTTGCAGG 60 117751017 117751037 GTGCATTCAGGTAAGACTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Card14 ENSRNOG00000047367 ENSRNOT00000070842 3 1 1 80 10 108466867 108467506 TCATGAATACGAGCACCCA 59 108467547 108467568 TGGGAAATATGTCCATCTTGTG 59 NA Rattus norvegicus 81 RGD1559682 ENSRNOG00000022492 ENSRNOT00000037377 1 1 1 60 15 81577256 81577275 CTTTCGTTCTCTGACCACTG 59 81577215 81577233 TCTGTGAAAGGAGGAACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpne7 ENSRNOG00000015397 ENSRNOT00000068231,ENSRNOT00000077701 2 2 2 80 19 55944828 55945481 GTGAGCTCAAGAATGCGTC 59 55945524 55945543 TGTAGTACTCAACCACCTGC 60 NA Rattus norvegicus 81 Tgm7 ENSRNOG00000037203 ENSRNOT00000056190 1 1 1 80 3 113055148 113055168 CTATGGCTTTGTTTACAAGGG 57 113053597 113055107 ACGATGTCCTCTTCAAACTG 58 NA Rattus norvegicus 81 Tgm7 ENSRNOG00000037203 ENSRNOT00000056190 2 1 1 80 3 113055146 113055167 TATGGCTTTGTTTACAAGGGTC 59 113053596 113055107 AACGATGTCCTCTTCAAACTG 59 NA Rattus norvegicus 81 AABR07040565.1 ENSRNOG00000037736 ENSRNOT00000050903 2 1 1 60 X 104336879 104336897 CTCACTAAAGGGCATCCTG 58 104336837 104336855 GTTGCTGTTGAAGTCGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akap3 ENSRNOG00000059227 ENSRNOT00000086525,ENSRNOT00000079225 2 2 2 90 4 159417230 159425169 GAATCCAGGAGAAGCTGCT 60 159425222 159425241 TCATACCTAAGCACCGACTG 59 NA Rattus norvegicus 81 Eif4e3 ENSRNOG00000010301 ENSRNOT00000013719 1 1 1 87 4 132083994 132084012 ACAACATCCCTCCTGTGAC 59 132082545 132083943 CTCTCCTCTTCCCACAGTG 59 NA Rattus norvegicus 81 Tnfrsf13b ENSRNOG00000002304 ENSRNOT00000003139 3 1 1 84 10 47412628 47412646 AGAGAACCTGTGTCTCCTG 58 47412692 47414556 CTGCAGTTGATGAATTTGCAG 59 NA Rattus norvegicus 81 Znhit6 ENSRNOG00000030049 ENSRNOT00000041897 2 1 1 80 2 251460048 251460067 GTTTACTTGAGGCTGCTACC 59 251460108 251469962 AAACTGCTGATTCCTATGGTC 58 NA Rattus norvegicus 81 Zfp148 ENSRNOG00000001789 ENSRNOT00000086955,ENSRNOT00000002435 2 2 2 87 11 70570517 70570535 AAATGACGAAGAGCAGACG 58 70550960 70570468 CTCCTGCTTTACACTTATGGG 59 NA Rattus norvegicus 81 Tmbim1 ENSRNOG00000014797 ENSRNOT00000077336 1 1 4 80 9 81576566 81577700 CATGAACTACGGCCATGAC 59 81576504 81576522 TTCCGGTCATCCCATTCTC 59 NA Rattus norvegicus 81 Cnnm2 ENSRNOG00000020113 ENSRNOT00000054699 1 1 1 80 1 266624986 266627517 GACTTGTACACCGACAACAG 59 266627560 266627578 CGTCTGCTTAAAGGCAGAG 59 NA Rattus norvegicus 81 Cnnm2 ENSRNOG00000020113 ENSRNOT00000054699 3 1 1 80 1 266624925 266624946 AATTGTCACCTTGGAAGATGTG 59 266624986 266627517 CTGTTGTCGGTGTACAAGTC 59 NA Rattus norvegicus 81 Prr19 ENSRNOG00000043154 ENSRNOT00000088955 1 1 2 80 1 82171746 82171766 CTTCAGTCAAAGGCAAGGAG 59 82171809 82171827 CCAACACAGGGAGATCTGG 60 NA Rattus norvegicus 81 Mettl11b ENSRNOG00000025415 ENSRNOT00000076404 3 1 1 86 13 81990754 81990772 TTACCACTGCTACAGCCTG 59 81989940 81990704 GTCAGGTACCCTGATACCC 59 NA Rattus norvegicus 81 Calm1 ENSRNOG00000004060 ENSRNOT00000064679 2 1 1 84 6 124224161 124224183 GCTAACAGATGAAGAAGTAGACG 59 124224221 124224389 CTGTACGAATTCTTCATAGTTGACC 60 NA Rattus norvegicus 81 Numbl ENSRNOG00000020867 ENSRNOT00000057213,ENSRNOT00000090478 1 2 2 86 1 84076217 84078101 TGACAAGACCAAGGACCTG 59 84078151 84078169 GAGAATGCCTTGTCCAGGT 60 NA Rattus norvegicus 81 Cant1 ENSRNOG00000003239 ENSRNOT00000066303 3 1 1 82 10 107434863 107434881 GTGTGGAACACGAGAACTG 59 107434246 107434817 ATGAATGAGGTAGCCTGGC 60 NA Rattus norvegicus 81 Mrps18b ENSRNOG00000000804 ENSRNOT00000081904 3 1 3 60 20 3344940 3344960 CCTTCACTCTTACGAAGTTCC 59 3344982 3345000 TCGGCAGAGAAATTCCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Specc1 ENSRNOG00000002903 ENSRNOT00000080682,ENSRNOT00000057798 1 2 2 80 10 48335372 48335391 TGAAGAAGACCTCAACTTCC 57 48335433 48418276 TTGTTGGAATAGTCCCTGTG 58 NA Rattus norvegicus 81 Ctdspl2 ENSRNOG00000022141 ENSRNOT00000078978,ENSRNOT00000037168 2 2 2 80 3 113936774 113936793 ATAGGAAACCTGCTCTTCCT 58 113936836 113940606 GCACTAGCGTTTCATCCAG 59 NA Rattus norvegicus 81 Serpina10 ENSRNOG00000050761 ENSRNOT00000073709 2 1 1 80 6 127501512 127501530 GGATCTTCTCCACCTCAGC 60 127500353 127501468 ACTGTTGTACGACCTTGGA 59 NA Rattus norvegicus 81 Col20a1 ENSRNOG00000010326 ENSRNOT00000040270 1 1 1 80 3 176515399 176515418 CACAGCTGGTTTCATCACAC 60 176515461 176515549 ATCTGGAGCTGGAATGTGG 60 NA Rattus norvegicus 81 Ankh ENSRNOG00000010960 ENSRNOT00000068484 2 1 1 87 2 80219265 80226176 ATAGCTCAGGTTGTGTTCG 58 80226227 80226245 TGTACAGAGACAGGATGGG 58 NA Rattus norvegicus 81 LOC102549842 ENSRNOG00000049259 ENSRNOT00000085560 2 1 3 62 1 37957287 37957310 CTGGAGAATTATAGCAACCTTGTG 60 37918596 37918615 GCAGGATGAAGATGGAAGAC 59 NA DesignNoJunction Rattus norvegicus 81 Triap1 ENSRNOG00000047812 ENSRNOT00000075320 3 1 1 82 12 47031404 47031422 AGTTTCTCAAAGGAGACGG 57 47029933 47031359 CTTGATTGCTTTCTGGACAC 57 NA Rattus norvegicus 81 LOC684709 ENSRNOG00000046786 ENSRNOT00000074864 3 1 1 60 13 71305733 71305751 GATAGTGACGGGTTCCCTC 59 71305774 71305793 CACCATCCCATCATCAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Teddm1 ENSRNOG00000048614 ENSRNOT00000071815 3 1 1 60 13 71323193 71323213 CCACGTTAAAGACTCATCTGG 59 71323234 71323253 TACCACCAAGATGAGGAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mettl13 ENSRNOG00000003042 ENSRNOT00000076939,ENSRNOT00000063902 1 2 4 65 13 80439269 80440888 AAAGGTGCTTGTGATCGGA 60 80439222 80439241 TGATAGCCCACGTCATAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Mettl13 ENSRNOG00000003042 ENSRNOT00000076939,ENSRNOT00000063902 2 2 4 66 13 80439269 80440888 AAAGGTGCTTGTGATCGGA 60 80439221 80439241 CTGATAGCCCACGTCATAGAG 60 NA DesignNoJunction Rattus norvegicus 81 Qser1 ENSRNOG00000037514 ENSRNOT00000056808 2 1 1 80 3 94715261 94715280 GTTACATGGAGTTGCTCGTC 59 94713475 94715219 AAAGAAGCTCATCGTTGCTC 59 NA Rattus norvegicus 81 Ache ENSRNOG00000050841 ENSRNOT00000089392 1 1 3 83 12 22473605 22473624 AATACGTGAGCCTGAACCT 59 22473539 22473557 AGAAACGATTCCAGAAGCG 58 NA Rattus norvegicus 81 Ache ENSRNOG00000050841 ENSRNOT00000075504 3 1 3 85 12 22473605 22473627 AGCAATACGTGAGCAACCT 60 22473538 22473557 GAGAAACGATTCCAGAAGCG 59 NA Rattus norvegicus 81 Ifrd2 ENSRNOG00000016150 ENSRNOT00000022092 1 1 1 83 8 116346685 116346703 AGTGAAAGTGTGAACCTGC 58 116346750 116347083 GAAGTCCTCCTCGAGATCC 59 NA Rattus norvegicus 81 LOC100912609 ENSRNOG00000050031 ENSRNOT00000073808 2 1 1 60 4 170194518 170194537 ATCCAAAGTTACGAGAAGCA 57 170194477 170194497 CATGATGGTACTTCTCTGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aamp ENSRNOG00000014399 ENSRNOT00000090267 3 1 3 60 9 81563546 81563564 TGCCTACTTCTCTTTGCAG 58 81563504 81563524 AATCATGACTGAAACCAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Calml5 ENSRNOG00000028576 ENSRNOT00000031504 3 1 1 62 17 70041963 70045333 AAGGGCTGGGAAGAATCAG 59 70041919 70041940 TAGGAAATGCCTTGATTGAAGC 59 NA DesignNoJunction Rattus norvegicus 81 H2afj ENSRNOG00000045819 ENSRNOT00000073287 2 1 1 75 4 170149240 170149258 CGAGGGACAACAAGAAGAC 58 170149297 170149315 TTGTTGAGCTCTTCGTCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000073853 2 1 10 80 15 32817409 32852780 CTTTCTGTCAAGCCAAATGTC 58 32852820 32852840 GAGGGTGATGTTATCAGACTG 58 NA Rattus norvegicus 81 Lrrn4cl ENSRNOG00000026302 ENSRNOT00000036454 1 1 1 123 1 225048299 225048895 TACCCACTGGTCTTGTCCT 60 225048982 225049000 TTGGGAAACCAAGGAGGTG 60 NA Rattus norvegicus 81 Lars ENSRNOG00000018304 ENSRNOT00000025284 1 1 1 80 18 36539836 36539857 TTCAAACAATCCTTCTGACTCC 59 36538895 36539798 TAATTGAATCAGGCTTTCCCAG 59 NA Rattus norvegicus 81 Sympk ENSRNOG00000014353 ENSRNOT00000019814,ENSRNOT00000084985 2 2 2 80 1 79953615 79953997 GCTTGGAGAAGAAAGAGGT 57 79954041 79954059 GGTTGAAGACCTCCTTCAC 58 NA Rattus norvegicus 81 LOC100909526 ENSRNOG00000048864 ENSRNOT00000043099 3 1 1 81 7 10500316 10500335 TTGGATCCTTCCCAGAAGAG 59 10499963 10500276 CCAATTTGTAGCCTATAGCAGTG 60 NA Rattus norvegicus 81 Slc7a6os ENSRNOG00000020049 ENSRNOT00000027200 3 1 1 82 19 38181549 38182648 GATGAAGATTCCAGAGGCTC 58 38181486 38181504 TATTTGCTCCACACCAGTC 58 NA Rattus norvegicus 81 Hspa2 ENSRNOG00000006472 ENSRNOT00000079359,ENSRNOT00000008504 3 2 2 119 6 99433618 99433636 ATATCTGTTGGACCACCGG 59 99433960 99433978 CCTTGCCATGTTGGAAGAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rbm17 ENSRNOG00000018767 ENSRNOT00000025550 2 1 1 80 17 70601769 70602838 TGATATTTGAGATTCCTGGTGC 59 70602878 70602897 TAATTGCCGATTCGACTCTC 58 NA Rattus norvegicus 81 Cited2 ENSRNOG00000056940 ENSRNOT00000086790 1 1 1 296 1 12823587 12824080 AGGACTGGAAATGGCAGAC 60 12824340 12824358 GAGTTGTTAAACCTGGCGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07041179.1 ENSRNOG00000016400 ENSRNOT00000022122 2 1 1 98 X 121612984 121613173 CTTCATGTTACCCGCATCC 59 121613235 121613253 GTAGGAACATGGAAGGCTG 58 NA Rattus norvegicus 81 Armc5 ENSRNOG00000019935 ENSRNOT00000027032 2 1 1 80 1 199656246 199656265 TCTAGCCAACTGCTGTACAG 60 199656308 199657623 AGAATGGTCACCAAAGGGA 59 NA Rattus norvegicus 81 Tspan12 ENSRNOG00000059016 ENSRNOT00000083938 3 1 1 80 4 48879860 48886765 GAAGTTATGGTGCCAGTACAG 59 48879800 48879818 CCTATACCTGGGTAAGCCG 59 NA Rattus norvegicus 81 Nxf7 ENSRNOG00000023256 ENSRNOT00000033752 3 1 1 80 X 106054280 106054300 CTGAGCATTTACCATGAGCAG 60 106054086 106054240 ACACATGCTACTCAGATCTGG 60 NA Rattus norvegicus 81 Otub1 ENSRNOG00000021175 ENSRNOT00000028752 3 1 1 80 1 222453556 222457752 AGAAGATCAAGGACCTCCAC 59 222453495 222453514 CAAACGCTCGATAGAAGCAG 60 NA Rattus norvegicus 81 Rnf145 ENSRNOG00000004602 ENSRNOT00000006436 1 1 1 80 10 30191658 30191681 CTGTACTTTCTAGGGTCTAACCTC 60 30191717 30195741 CTCCACTACCTGAACTAACTCC 60 NA Rattus norvegicus 81 Cdnf ENSRNOG00000026493 ENSRNOT00000036299 2 1 1 80 17 78735199 78735219 CTTTGGATCTCCAACCATGTG 59 78726336 78735161 CTCTTTGCATACTTCACAGTCAG 60 NA Rattus norvegicus 81 Kctd17 ENSRNOG00000000231 ENSRNOT00000046563 1 1 1 80 7 119647622 119648736 AATCGGACAGGGATGAGAC 59 119648778 119648798 GCCTGAGGAAGTTCAATATGG 59 NA Rattus norvegicus 81 Zfp420 ENSRNOG00000037556 ENSRNOT00000032973 2 1 1 60 1 88542779 88542798 TTCTCCACAGACGAATCCAC 60 88542819 88542839 GCTTTCCCACACTCTTTACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serhl2 ENSRNOG00000022932 ENSRNOT00000036586 1 1 1 80 7 123966455 123967760 TCATGGACTTGAATGAAGTGGA 60 123967801 123967819 GGGAGTCTTCCACCTTCAG 59 NA Rattus norvegicus 81 Paics ENSRNOG00000002101 ENSRNOT00000063942 3 1 1 80 14 33569719 33569743 AGATAATGATTCCTGGAGACTATGG 60 33569344 33569685 TCTTTGAGATCCCGATAAGACTG 60 NA Rattus norvegicus 81 Mylk2 ENSRNOG00000008235 ENSRNOT00000011255 1 1 1 80 3 148392354 148392456 GTTCATGGAGTACATTGAGGG 59 148392497 148392516 ATGGTATCCACTTCCGTCAG 59 NA Rattus norvegicus 81 Olr1250 ENSRNOG00000046504 ENSRNOT00000073845 2 1 1 60 4 1658805 1658825 CTATTTCTGTGATCTCCTCCC 57 1658846 1658865 CTCATTGACATAGGTGCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562265 ENSRNOG00000032454 ENSRNOT00000042939 2 1 1 60 5 44270179 44270197 CTTAGACAAGTGCCAAGCC 59 44270221 44270239 ATACATGGGCTCATCACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lgals3bp ENSRNOG00000003217 ENSRNOT00000004320 1 1 1 80 10 107419336 107420592 TCTGCTCCAACGATTCCAG 60 107419274 107419292 TGTCAAAGATCTGGCCCAG 60 NA Rattus norvegicus 81 Golim4 ENSRNOG00000024213 ENSRNOT00000064588,ENSRNOT00000089229,ENSRNOT00000037115 1 3 3 80 2 174323432 174330976 GGAGAGGAAGAGGTTCAGG 59 174323370 174323391 TTCACCATAAGTCTCTTCAGCA 60 NA Rattus norvegicus 81 Csrp2 ENSRNOG00000003772 ENSRNOT00000067011,ENSRNOT00000080598 3 2 2 81 7 53642212 53645188 TTTCTGTGCATGGTTTGCA 59 53645230 53645251 AGCATGATTTGCAGTAGATCTC 59 NA Rattus norvegicus 81 RGD1561149 ENSRNOG00000008113 ENSRNOT00000010688 1 1 1 80 5 147406659 147406677 GGGAGCTGACAGAGAATGG 60 147406226 147406618 GTTTCTTCTGTGGATCTGAACC 59 NA Rattus norvegicus 81 LOC501282 ENSRNOG00000046883 ENSRNOT00000072870 1 1 1 83 9 10891097 10891116 AGATCGAGTACACCATGGC 59 10891616 10891634 TCACTTCAAACTCCTCGCT 59 NA Rattus norvegicus 81 AABR07003230.1 ENSRNOG00000049445 ENSRNOT00000072699 2 1 1 80 1 99399357 99399478 CACAAGTCACAAGTGAGACTC 59 99399520 99399538 GTCCTTGTTGCAAGATGCC 60 NA Rattus norvegicus 81 Ces2j ENSRNOG00000029744 ENSRNOT00000061734 2 1 1 80 19 491134 491152 AGCCATTATGCAGAGTGGA 59 491194 492295 TTGGCTACTGTCTTGTAGACC 60 NA Rattus norvegicus 81 Olr471 ENSRNOG00000031124 ENSRNOT00000045693 3 1 1 60 3 73345284 73345305 TTTGTAAGTCCCATGTTGAACC 59 73345322 73345344 CGTGTTTCACATCCTTATTCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Elmod3 ENSRNOG00000038102 ENSRNOT00000086725,ENSRNOT00000057989 2 2 2 80 4 100448526 100461917 CAAGATGGACAGGTAGAAAGTG 59 100448467 100448486 TCCTCTGAAAGCCATGAGTG 60 NA Rattus norvegicus 81 Plekhf1 ENSRNOG00000027724 ENSRNOT00000020383 1 1 1 60 1 94610494 94610512 AGAAGTCCTTCGTGGTCTC 59 94610452 94610471 ATGTGGCTTATCCATTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pnoc ENSRNOG00000014231 ENSRNOT00000019117 3 1 1 148 15 48809568 48818457 CTTCAACCTGAAGCTGTGC 60 48809438 48809456 TCGACTGGTAAAGAGCAGC 60 NA Rattus norvegicus 81 Tgfb1i1 ENSRNOG00000019965 ENSRNOT00000054980 2 1 1 80 1 199666086 199666219 CATAACCACTGTCCCTTCC 58 199666261 199666281 AGTCTATCTAGCTCCTGAGTG 58 NA Rattus norvegicus 81 Klhl33 ENSRNOG00000025868 ENSRNOT00000032992 1 1 1 80 15 27814282 27814389 AACTCTCAGGTGGAGTTCC 59 27814220 27814238 ACCAAAGGGAAGAAGCTCC 60 NA Rattus norvegicus 81 Phykpl ENSRNOG00000048357 ENSRNOT00000086443,ENSRNOT00000059104 2 2 2 80 10 34953500 34954386 TTGGTCTCCAGGCTAAAGG 59 34954430 34954448 TGGAGGCTTGAACTTCAGG 60 NA Rattus norvegicus 81 Zbtb2 ENSRNOG00000019544 ENSRNOT00000026433 3 1 1 82 1 40917043 40921262 TCAGACCAGTGAATGTGTCC 60 40916980 40916998 CGGTGTACATCAGGTGGAG 60 NA Rattus norvegicus 81 AABR07017662.2 ENSRNOG00000047078 ENSRNOT00000066990 1 1 1 80 15 29856713 29856904 AGATTTGCTGGGTGAGAGG 59 29856651 29856669 TCAGAGCAGGATTGGTTCC 59 NA Rattus norvegicus 81 Chst4 ENSRNOG00000016953 ENSRNOT00000022749 1 1 1 99 19 41631798 41638249 CAGAATATCGGGATGATGCTG 59 41638310 41638328 TATGACCGGACATGTGGAC 59 NA InUTR Rattus norvegicus 81 AABR07053580.1 ENSRNOG00000051627 ENSRNOT00000080247 1 1 1 80 3 114688366 114688389 TCAAGATCCAGATCTGAATCTAGG 59 114688306 114688328 AGAGTGAGATGATCGTGACC 59 NA Rattus norvegicus 81 As3mt ENSRNOG00000020081 ENSRNOT00000027223 1 1 1 80 1 266494419 266500460 TACATTCAAGGAAGGTGAAGC 58 266500502 266500520 AAATCGTGAGCAAACCGAG 59 NA Rattus norvegicus 81 AABR07032457.1 ENSRNOG00000015806 ENSRNOT00000021161 1 1 1 80 18 66741329 66741844 AGAGTCTACATACAATGTCACCC 60 66741884 66741902 CTCTTGGCCAGAATCTTGC 59 NA Rattus norvegicus 81 Stx7 ENSRNOG00000015670 ENSRNOT00000021318,ENSRNOT00000081804 1 2 2 80 1 22253332 22253351 CCAACTTGCGAAAGAAACAG 58 22252400 22253289 TTCCTTTGACGCTGTTCAC 59 NA Rattus norvegicus 81 Ncor1 ENSRNOG00000055246 ENSRNOT00000081409 3 1 1 80 10 48659739 48659760 TGGAAGGAAATGTAAAGCAAGG 59 48655566 48659698 ACAGCACAGTCCTTTCCTC 60 NA Rattus norvegicus 81 Uxt ENSRNOG00000009893 ENSRNOT00000013476 2 1 1 80 X 1277370 1277391 CCATCGAGACAAGGTATATGAG 58 1277431 1277587 TGATTAGTTTCCTGGAGTCG 57 NA Rattus norvegicus 81 Slc14a1 ENSRNOG00000016753 ENSRNOT00000074572,ENSRNOT00000022598 1 2 2 80 18 74473249 74473270 AAGTAAACTCTTCATGCCTGTC 59 74471902 74473208 AGAGACTTCAACAGCTCCA 58 NA Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000090445 1 1 8 80 3 100803302 100815565 AATGGTGTCATAAAGTTCCACC 59 100815603 100815624 GCAACCGAAGTATGAAATAACC 58 NA InUTR Rattus norvegicus 81 Dpep3 ENSRNOG00000019757 ENSRNOT00000026809 3 1 1 80 19 37951206 37951224 GCAGATTGACCTCATCCGA 60 37951056 37951163 GTGCTATTCAGACCATCAGC 59 NA Rattus norvegicus 81 Ciao1 ENSRNOG00000012638 ENSRNOT00000017603,ENSRNOT00000085562 3 2 2 94 3 119676287 119676306 GAATGAGGTCAAGTCAGTGG 58 119676112 119676231 CTTCATCAACTTCCCAGACC 58 NA Rattus norvegicus 81 Actr6 ENSRNOG00000007875 ENSRNOT00000010414 1 1 1 80 7 30388654 30389453 AAAGAGATCATATCCTACAGGCAG 60 30388597 30388617 GTAGCACACGTCTTCTTTCAC 60 NA Rattus norvegicus 81 Hacd4 ENSRNOG00000005772 ENSRNOT00000033651 1 1 1 80 5 106746237 106746260 GAGGTCCAAGAGAAATATGTAGTG 59 106742060 106746201 CATGCTGTAAGTGTACCTTACC 59 NA Rattus norvegicus 81 Zfp365 ENSRNOG00000000638 ENSRNOT00000057992 1 1 1 83 20 22063448 22063466 GTGGCTGTGGAAATGATCG 59 22063510 22075304 GACAACTTCTTCCTCTTTCCTC 59 NA Rattus norvegicus 81 Mir411 ENSRNOG00000035574 ENSRNOT00000053697 2 1 1 60 6 133858867 133858888 CGTATAGCGTACGCTTTATCTG 59 133858906 133858927 TTTGATACTGAGGGTTAGTGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igj ENSRNOG00000003666 ENSRNOT00000004866 2 1 1 80 14 21178887 21182303 GAGTATCCGAATTGTTGTCCC 59 21182342 21182363 TACACAAAGTTCGTTCTCACTG 59 NA Rattus norvegicus 81 RGD1563581 ENSRNOG00000040101 ENSRNOT00000047043 1 1 1 60 17 2165945 2165963 ATGGAGTCCCTGATTGCTG 60 2165986 2166005 ATTGACAGCTATTTCCGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Haus1 ENSRNOG00000046666 ENSRNOT00000073597 3 1 1 80 18 74191649 74191667 CCAGAACATGGACTTCCTG 58 74191239 74191606 CTGGATGAAAGTTGCTCCTC 59 NA Rattus norvegicus 81 AABR07017833.1 ENSRNOG00000054992 ENSRNOT00000072362 1 1 1 65 15 31642299 31644841 AACCTCACTCACATCAGGG 59 31644870 31644888 CTTTGTTTCACCTGCTGCT 59 NA DesignNoJunction Rattus norvegicus 81 Akip1 ENSRNOG00000013744 ENSRNOT00000018497 2 1 1 80 1 174335868 174338476 AGAGTCATCTTGGCCTATTGAG 60 174338516 174338535 CCCACAGTGACAGAATAGGT 59 NA Rattus norvegicus 81 Tmprss11g ENSRNOG00000029964 ENSRNOT00000060109 2 1 1 80 14 23204026 23204047 ATGGTGGTGCTATATCATCAGG 60 23204087 23205801 CTCCAGAATCACCCTCACAG 60 NA Rattus norvegicus 81 Acsf3 ENSRNOG00000015077 ENSRNOT00000020313 1 1 1 80 19 55630226 55630244 GGAGGCTATAAAGTCAGCG 58 55630287 55630725 TCCAATTACAGCGACATCTG 58 NA Rattus norvegicus 81 Prkaa2 ENSRNOG00000007706 ENSRNOT00000010680 3 1 1 80 5 124578880 124578900 GCAAACCATACGACATTATGG 58 124575882 124578840 GGTATGCATTCACTACCTTCC 59 NA Rattus norvegicus 81 Tmem229a ENSRNOG00000039464 ENSRNOT00000060476 2 1 1 60 4 52349210 52349233 CTCATCACCTTGATGTATTTACCC 59 52349173 52349191 ACAGTAGGTCCTGGTACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arid3c ENSRNOG00000013416 ENSRNOT00000046589 1 1 1 85 5 58113299 58113318 GATGTCCCAATTCACCATCC 59 58111555 58113253 TTCATACAGCTGCTTGAACTG 59 NA Rattus norvegicus 81 LOC100912017 ENSRNOG00000045677 ENSRNOT00000050551 1 1 1 80 1 213680884 213681932 GTATTCTGACCTTGTCACACTG 59 213681973 213681991 GGGAAGGAGCTACCTTCAG 59 NA Rattus norvegicus 81 Nipa1 ENSRNOG00000042702 ENSRNOT00000068501 3 1 1 85 1 114393365 114393383 CGTGCTGATCATCCATTCC 59 114388133 114393316 CCACAAACACTGGATTGGT 58 NA Rattus norvegicus 81 Tomm40 ENSRNOG00000018556 ENSRNOT00000025281 1 1 1 80 1 80629080 80629099 CTGTTTCCAGTTCAGATGGA 58 80628485 80629037 TACTGTATGGGTCACCTGG 58 NA Rattus norvegicus 81 Tomm40 ENSRNOG00000018556 ENSRNOT00000025281 2 1 1 81 1 80629081 80629100 GCTGTTTCCAGTTCAGATGG 59 80628485 80629038 TACTGTATGGGTCACCTGGA 60 NA Rattus norvegicus 81 Adamts9 ENSRNOG00000023257 ENSRNOT00000057045 3 1 1 80 4 124819064 124819084 CACTGAACTTCTACACCAACC 59 124817578 124819025 CATACCCAGTGTCTAAGAACTC 58 NA Rattus norvegicus 81 Plrg1 ENSRNOG00000006655 ENSRNOT00000009113 3 1 1 80 2 182055631 182055652 TCAGAAAGTCGGTTACTAACAG 58 182055693 182056501 AGTTTCTTCTGTCGCAGTC 58 NA Rattus norvegicus 81 Opa3 ENSRNOG00000025890 ENSRNOT00000029552 1 1 1 128 1 80141722 80141740 TGTTCTACTTGGGCATCCG 60 80141832 80158291 TTTCCACCCAGTGGTACAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100365347 ENSRNOG00000043089 ENSRNOT00000065401 1 1 1 90 15 31167876 31167894 TTTCACTGGTGGTCCTGTG 60 31168496 31168514 CCCTCTGGAACAGTGAGAG 59 NA DesignNoJunction Rattus norvegicus 81 AABR07001923.1 ENSRNOG00000047884 ENSRNOT00000072607 2 1 1 60 1 62114193 62114213 GGTCTAAATCAAGGAGTCCAC 58 62114153 62114175 CCTTATTAAGCACTGTACCACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam26d ENSRNOG00000000580 ENSRNOT00000000708 1 1 1 80 20 27575916 27577699 CAGGTATCAGTCACAGATGC 58 27575855 27575874 CTCGCCAGACATTTAGAGAC 58 NA Rattus norvegicus 81 AABR07031158.1 ENSRNOG00000043413 ENSRNOT00000073306 2 1 1 139 18 2182271 2182289 TTTGTGATGGAGGAGGGTC 59 2181403 2182170 AGATGGCGAGTTATCACAGAG 60 NA Rattus norvegicus 81 Nkx2-2 ENSRNOG00000012728 ENSRNOT00000017364 2 1 1 105 3 141409631 141410629 CCTCCAATACTCCCTGCAC 60 141409544 141409562 CTCCTTGTCATTGTCCGGT 60 NA Rattus norvegicus 81 LOC100364629 ENSRNOG00000025713 ENSRNOT00000036335 1 1 1 60 3 21313283 21313301 CCAGCATCTTCATACACCC 58 21313323 21313343 GCAGGTATCAATGAAGGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abca16 ENSRNOG00000015783 ENSRNOT00000001933,ENSRNOT00000088121 1 2 2 80 1 190352252 190352366 TACCCACAGCTAAGAGTACC 58 190352409 190352427 TGAGCAGCAGTGTAAAGAC 58 NA Rattus norvegicus 81 Araf ENSRNOG00000010838 ENSRNOT00000039911 1 1 1 80 X 1380890 1380911 TTGTGCTCTATGAGCTTATGAC 58 1380018 1380852 GACCCACCATAAAGATGATCTG 59 NA Rattus norvegicus 81 Eprs ENSRNOG00000002393 ENSRNOT00000085214,ENSRNOT00000038264 3 2 2 80 13 103307637 103308823 CACACGGAGATTGATCATTGG 60 103308865 103308883 CTCCTTGATTGCCGAAGTC 59 NA Rattus norvegicus 81 Lingo2 ENSRNOG00000005634 ENSRNOT00000007449 2 1 1 60 5 51468142 51468166 CCTTTAAACACCTTGTATACCTGAC 60 51468106 51468127 ATAGTGCTGATGGGATTGTAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Coro7 ENSRNOG00000004146 ENSRNOT00000086305,ENSRNOT00000006067 3 2 2 82 10 11140946 11140964 GTACGAGGTGATCCCAGAG 59 11141008 11142016 GAAGGATAAAGCCCTTGTGAG 59 NA Rattus norvegicus 81 Olr1294 ENSRNOG00000050283 ENSRNOT00000075732 1 1 1 60 15 35549697 35549716 ACTTGCAGTTCCCATATCTC 57 35549736 35549757 AGTATGTGAATGCTGTAGATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1294 ENSRNOG00000050283 ENSRNOT00000075732 2 1 1 60 15 35549113 35549132 TGATTGCATTGATTTGGCTC 58 35549152 35549173 CTGCTGAGGAAATAATACATGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dchs1 ENSRNOG00000031643 ENSRNOT00000042865 1 1 1 80 1 170605828 170605847 TGACCTACAGCCTTCAACAG 60 170605570 170605787 GGAGTGTAGTCACTTCTCCAG 60 NA Rattus norvegicus 81 Lsm8 ENSRNOG00000058677 ENSRNOT00000089007 1 1 1 86 4 45558572 45560502 GAGATAATGTAGCAGTCATTGGG 59 45560548 45560566 AGTTCAGAGGTTCTGCTCG 59 NA Rattus norvegicus 81 B3galt6 ENSRNOG00000019979 ENSRNOT00000027060 3 1 1 60 5 173424821 173424839 ACCAGTAGATGTGCAACGA 59 173424779 173424797 GCCTCGAGATTTGTACTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fkbp4 ENSRNOG00000006444 ENSRNOT00000008737 1 1 1 80 4 161753935 161754630 CTTGTATTTGAGGTGGAGCTG 59 161753875 161753893 TATTCTGCGGATGATCCCA 58 NA Rattus norvegicus 81 Klk4 ENSRNOG00000018864 ENSRNOT00000025614 2 1 1 82 1 99831624 99831886 CACTGCATACAGGACTCCT 59 99831932 99831950 TCTAACATCCGACTGCCAG 59 NA Rattus norvegicus 81 LOC100365136 ENSRNOG00000049881 ENSRNOT00000048256 3 1 1 81 1 38486273 38486293 GAAGTGTAAATTCGAGAGGCA 59 38484844 38486231 AACATCCAGACTGTAGTCCC 59 NA Rattus norvegicus 81 Akr1c12l1 ENSRNOG00000050243 ENSRNOT00000064884 3 1 1 80 17 69591548 69592060 GACACATGGGAGATGTTGG 58 69592103 69592122 CTGCTTGTGGTTAAAGTTGG 58 NA Rattus norvegicus 81 Rela ENSRNOG00000030888 ENSRNOT00000045233 1 1 1 80 1 220994894 220994912 TGTGAAGAAGCGAGACCTG 60 220994953 220995300 TCCTCTATGGGAACTTGAAAGG 60 NA Rattus norvegicus 81 LOC100910122 ENSRNOG00000047933 ENSRNOT00000037303,ENSRNOT00000091242 2 2 2 80 10 37047186 37048072 TTGGTCTCCAGGCTAAAGG 59 37048116 37048134 TGGAGGCTTGAACTTCAGG 60 NA Rattus norvegicus 81 Cdk16 ENSRNOG00000008578 ENSRNOT00000064309,ENSRNOT00000011592 2 2 2 80 X 1712662 1712781 CCACTGAGGATATCAACAAACG 60 1712603 1712622 TGAGTGTCAGCTTCTCAAGG 60 NA Rattus norvegicus 81 Tacstd2 ENSRNOG00000007740 ENSRNOT00000010156 3 1 1 60 4 98342344 98342363 CCACATCCTCATTGAGTTGC 59 98342303 98342322 TAGGTCAGAGTGGTTGAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spag6l ENSRNOG00000022021 ENSRNOT00000002513 3 1 1 80 17 85433453 85433471 AGAACCGGGTTCTATCCTC 58 85433509 85437712 GGAGAATAATACCTCACTATCTCCT 59 NA Rattus norvegicus 81 Bnipl ENSRNOG00000021116 ENSRNOT00000028671 2 1 1 80 2 196423321 196423339 GGTAGACGAATTGGAGACG 58 196420413 196423277 CGAGGCAAATCATCTTCCC 59 NA Rattus norvegicus 81 Cachd1 ENSRNOG00000010514 ENSRNOT00000014354 1 1 1 80 5 119804511 119804530 GGCGTCCTCAGAATTTATCC 59 119804571 119805717 TACTGCATGAAGATACCACTG 58 NA Rattus norvegicus 81 Lcn1 ENSRNOG00000033761 ENSRNOT00000042910 1 1 1 80 3 4233241 4233695 GAGAATCAGGATGTGTCAGG 58 4233736 4233756 AGATCCAAACTTCTTGTCAGG 58 NA Rattus norvegicus 81 Mir217 ENSRNOG00000035518 ENSRNOT00000053641 1 1 1 60 14 113119558 113119578 GATACTGCATCAGGAACTGAC 59 113119600 113119618 GGCAATGCATTAGGAACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam227a ENSRNOG00000021795 ENSRNOT00000078320,ENSRNOT00000056179,ENSRNOT00000056178 3 3 3 80 7 120874286 120874307 CAATTGAGGACTATGAGTTGGA 58 120873693 120874245 TCAGTTTCTTGACTCCGTC 57 NA Rattus norvegicus 81 Oxld1 ENSRNOG00000047517 ENSRNOT00000075206 3 1 1 83 10 109629191 109629813 GAGAGCTTTCTTCAGGGCA 60 109629126 109629146 GTGAAGAACACTGTGTCTTCC 59 NA Rattus norvegicus 81 Ngdn ENSRNOG00000018069 ENSRNOT00000024337 3 1 1 81 15 33682287 33682382 CAGCCTCAGTGAGAATGAC 58 33682765 33682783 CTCCTCATCCTCAGAGCTC 59 NA Rattus norvegicus 81 Ptges2 ENSRNOG00000014050 ENSRNOT00000019184 2 1 1 80 3 11426108 11426129 AGGACCGAGATTAAATTCTCCT 59 11426170 11428771 ATTGAGCTGTTGCAAGCTG 60 NA Rattus norvegicus 81 RGD1565911 ENSRNOG00000042840 ENSRNOT00000068178 2 1 1 60 5 87354136 87354157 TCACAGTCCTGAAACAAATGAG 59 87354176 87354196 TATTGTATGTCCTTCAGGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rasgef1a ENSRNOG00000031671 ENSRNOT00000051804 1 1 1 80 4 150141633 150141653 CCTCCTTTGAAAGTGAAGGTC 59 150141691 150142511 CTCTGTTTAGGAGAGTAGTCCTG 60 NA Rattus norvegicus 81 Dpm2 ENSRNOG00000049110 ENSRNOT00000071505 1 1 1 60 3 11589255 11589927 GGGTTGTTCATCACCTATGTG 59 11589949 11589967 TTCACTGAGCCTTCTTGGT 59 NA DesignNoJunction Rattus norvegicus 81 Dpm2 ENSRNOG00000049110 ENSRNOT00000071505 3 1 1 65 3 11587983 11588004 GTTAGCTTGATCATCTTCACCT 58 11588030 11589170 CTGGCTGTCAATGAATGGC 60 NA DesignNoJunction Rattus norvegicus 81 Wdr77 ENSRNOG00000016394 ENSRNOT00000076654,ENSRNOT00000086279,ENSRNOT00000022571 1 3 3 80 2 208585459 208586208 TCTGAGGTGTTTAGAAGTCG 57 208586249 208586269 GGTAAGAAGGGAGTGATTGAG 58 NA Rattus norvegicus 81 Wdr77 ENSRNOG00000016394 ENSRNOT00000076654,ENSRNOT00000086279,ENSRNOT00000022571 3 3 3 80 2 208585459 208586209 TCTGAGGTGTTTAGAAGTCGA 59 208586249 208586269 GGTAAGAAGGGAGTGATTGAG 58 NA Rattus norvegicus 81 AABR07042039.1 ENSRNOG00000032088 ENSRNOT00000047160 1 1 1 84 X 146403236 146403254 GAAGGGCTCCTGGATTCAG 60 146401565 146403192 GTGCTTAGAGTTTCCATTAGTCC 59 NA Rattus norvegicus 81 Abcf1 ENSRNOG00000000799 ENSRNOT00000001049,ENSRNOT00000081403 2 2 3 80 20 3316005 3316188 AATCGCATCAATAAGGCCG 59 3316230 3316250 TTTCCCTTTCGATTTCTCCTC 58 NA Rattus norvegicus 81 Tnfsf18 ENSRNOG00000026607 ENSRNOT00000039221 2 1 1 83 13 79378913 79384130 ACTTCACTCAAGCCAACTG 58 79386663 79386681 TTCAGGAGCTGTCATTTGC 59 NA Rattus norvegicus 81 AABR07005416.2 ENSRNOG00000048649 ENSRNOT00000072650 3 1 1 60 1 182843101 182843121 CCGTATCATTCCAGAGACTCC 60 182843141 182843161 TAAGATGTCGCTGTCAATGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chd5 ENSRNOG00000011268 ENSRNOT00000024732,ENSRNOT00000067892 2 2 2 80 5 169553005 169553025 GATGCTACTTCAGAAGATGCT 58 169553067 169554076 AACATCTTGGTCATCTGGG 57 NA Rattus norvegicus 81 Mdh2 ENSRNOG00000001440 ENSRNOT00000001958 2 1 1 81 12 23948699 23954249 CTTCAGCCCAGAACAATGC 60 23948636 23948656 TTCTTCAGGAGGAGTGAAAGG 60 NA Rattus norvegicus 81 Mpped1 ENSRNOG00000010834 ENSRNOT00000014720 2 1 1 80 7 124747110 124749167 ACATCCATGAAGGGTATGGAG 59 124749208 124749227 GCTGATAGTTCACAGTGCAC 59 NA Rattus norvegicus 81 Dus1l ENSRNOG00000047905 ENSRNOT00000073956,ENSRNOT00000086042 3 2 2 80 10 109973988 109974007 GGCTTGTCCAAGAATAAGCT 58 109972709 109973946 TGCATATTTGGGTTTCAGGG 59 NA Rattus norvegicus 81 Zfp426 ENSRNOG00000033624 ENSRNOT00000077465 1 1 2 80 8 21489304 21489322 AACCCAGATCAGAGAACCC 59 21481709 21489263 GATGAGCTGATATCCTACTGTG 58 NA Rattus norvegicus 81 Lsm5 ENSRNOG00000042126 ENSRNOT00000065625 2 1 1 106 4 87017932 87017952 GCTTGTGGACAAGTGTATAGG 59 87017598 87017867 CCAACACCATATTGACAAAGTC 58 NA Rattus norvegicus 81 Ing3 ENSRNOG00000005496 ENSRNOT00000007476 2 1 1 80 4 49038577 49038597 AATCTGATTCCAACAGTCAGG 58 49038634 49040221 CATAGGATACCTGATTACAGATGC 59 NA Rattus norvegicus 81 Ing3 ENSRNOG00000005496 ENSRNOT00000007476 3 1 1 80 4 49038629 49040217 GTATTGCATCTGTAATCAGGTATCC 60 49042053 49042074 TAGTGGAACCACTCTATTGGAC 59 NA Rattus norvegicus 81 LOC100911127 ENSRNOG00000055735 ENSRNOT00000091636 3 1 1 60 15 36157328 36157348 CTATTGTACCGATGCTGAACC 59 36157288 36157309 GCAATACTGACATCCTTATTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Agap1 ENSRNOG00000019476 ENSRNOT00000088192,ENSRNOT00000065720 3 2 2 80 9 96804896 96804914 TTACCCAACTCTCCAAGCC 59 96804958 96806127 ACCTCCGTTACTTGTCTGG 59 NA Rattus norvegicus 81 Psmd7 ENSRNOG00000014097 ENSRNOT00000019104 2 1 1 80 19 39643402 39643420 CCAAACTGCACAAGAACGA 59 39642617 39643362 CATCAATAATGACCAGTACCGAG 59 NA Rattus norvegicus 81 Rgn ENSRNOG00000007949 ENSRNOT00000010984 2 1 1 80 X 1837854 1846026 GGAGATACTTTGCTGGTACC 58 1837793 1837811 AAAGGGAGTACAAGGACCC 59 NA Rattus norvegicus 81 mrpl9 ENSRNOG00000020869 ENSRNOT00000028316 1 1 1 80 2 195685186 195685205 ATAAGTTGGTGGAGGACACG 60 195685247 195685951 CTCCAATTTCGTCCACAGAC 59 NA Rattus norvegicus 81 RGD1565894 ENSRNOG00000050226 ENSRNOT00000015408 3 1 1 60 18 59480035 59480056 ACATCAGAGTACATTTGTCCAG 58 59480074 59480095 TAGAGCTTGTTTGGTGAATCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Net1 ENSRNOG00000017765 ENSRNOT00000023945 3 1 1 80 17 70016242 70016389 TCCCTCTACACGAAGATCTG 58 70016431 70016450 GAATGTGACCGATCTGTTCC 59 NA Rattus norvegicus 81 AABR07004891.1 ENSRNOG00000033196 ENSRNOT00000025728 3 1 1 88 1 166187030 166189686 GTAAACAGGAGAAGGAGAAAGAG 59 166186964 166186982 CTCTTCCTCCTCTTCCTCC 58 NA Rattus norvegicus 81 Fam118a ENSRNOG00000013764 ENSRNOT00000044274,ENSRNOT00000083830 1 2 2 83 7 125950662 125950680 ACCTGCTGGAGATCTTTGG 59 125950727 125952875 CCCATTGAAGGACCTTCGT 60 NA Rattus norvegicus 81 Glt8d1 ENSRNOG00000018179 ENSRNOT00000013291,ENSRNOT00000024624 2 2 2 80 16 7096437 7096533 GATGAAGCTCAATGTAGAAGAGG 59 7096571 7096591 AATACGATAAGCAGAGGAGGT 59 NA Rattus norvegicus 81 Diras2 ENSRNOG00000032328 ENSRNOT00000044842 2 1 1 60 17 12763026 12763045 CTTCATCCTGGTCTACTCCA 58 12763067 12763086 ATAGATGGGCTTGAGTTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ssfa2 ENSRNOG00000005865 ENSRNOT00000008046 3 1 1 80 3 66598466 66598484 GATGACTTGTCACTGGGAG 58 66600297 66600402 GGCCAAGATATTGTTGCAG 57 NA Rattus norvegicus 81 Olr744 ENSRNOG00000028267 ENSRNOT00000032617 2 1 1 60 3 79165447 79165465 CATCACCGACTTACTTGCT 58 79165405 79165423 TATCTGAACCAGACAGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp532 ENSRNOG00000017116 ENSRNOT00000082403,ENSRNOT00000064250 3 2 2 80 18 61335684 61340359 ATGGACCATATCAAGTCTATGC 58 61340398 61340418 GCTCAAAGGCAAGTTTATACC 58 NA Rattus norvegicus 81 Sult4a1 ENSRNOG00000046975 ENSRNOT00000075099 1 1 1 80 7 124972603 124972623 ATTGGCCTCATGAACATTGAC 59 124970924 124972563 CGTCAGTTCCTTGATGATGTC 59 NA Rattus norvegicus 81 Phf10 ENSRNOG00000061312 ENSRNOT00000085273 2 1 1 80 1 56962590 56963332 GCGGAAATATCCAGATTTAGAGC 60 56962532 56962553 TCCGTGATGACGTTTAATTCTC 59 NA Rattus norvegicus 81 Ssc4d ENSRNOG00000001435 ENSRNOT00000001953 1 1 1 176 12 23755363 23756928 GAATTCTTGCATACACAGCC 58 23757599 23757617 GTCATCGTCGCATACAGTG 59 NA DesignNoJunction Rattus norvegicus 81 Kcne3 ENSRNOG00000017054 ENSRNOT00000048437 3 1 1 85 1 165190033 165195860 CAGAGTCAGATCACATTCCAG 58 165195906 165195925 TCTTGTACCAGGTCTCAGTC 59 NA InUTR Rattus norvegicus 81 Mall ENSRNOG00000015599 ENSRNOT00000021082 2 1 1 60 3 120276580 120276599 ACTACATCAATGTTGCAGCC 59 120273891 120273909 TGCAGGATATAGAGCAGCG 59 NA DesignNoJunction Rattus norvegicus 81 Nampt ENSRNOG00000009754 ENSRNOT00000013043,ENSRNOT00000086432 3 2 2 80 6 52148401 52148419 TGTCGAGAAGTACAGAGGC 59 52148459 52149852 TATCTAAGACCTTCAGGACAGTG 59 NA Rattus norvegicus 81 Usmg5 ENSRNOG00000020296 ENSRNOT00000027496 3 1 1 82 1 266862811 266862829 AAAGTGATGGCCAATTCCA 58 266862660 266862768 CAGGACACAATTCATTCTACCT 58 NA Rattus norvegicus 81 Ggnbp2 ENSRNOG00000027860 ENSRNOT00000085728,ENSRNOT00000042506 2 2 2 80 10 72177855 72179060 CTAAAGCAGTTTATTCAGCGAC 58 72177796 72177815 GACTTCACGTGATGTTACCA 58 NA Rattus norvegicus 81 Upk3bl ENSRNOG00000038896 ENSRNOT00000059451 1 1 1 80 12 23655240 23657124 GGTCATATCTGCTTGTTGCT 58 23655179 23655197 TGATGCGTGTGATATCGTC 58 NA Rattus norvegicus 81 Zg16 ENSRNOG00000016857 ENSRNOT00000022758 3 1 1 80 1 198484202 198485180 ACATAATAGGTCTCCAGGTGC 59 198484142 198484160 AGATCTCCTCCAGGTCTCC 60 NA Rattus norvegicus 81 Skida1 ENSRNOG00000033330 ENSRNOT00000040697 2 1 1 81 17 84828973 84828991 CTCCAGTTTGTCAGCTCCA 60 84828908 84828928 CTTCCTCCCTTTCCTCCTC 59 NA Rattus norvegicus 81 Mbd3 ENSRNOG00000028956 ENSRNOT00000049170 1 1 1 92 7 12184803 12184821 CTGTGGAGAAGAACCCTGG 60 12184877 12185493 CCTCCTGCTTCCTGATGTC 60 NA Rattus norvegicus 81 Gng8 ENSRNOG00000016701 ENSRNOT00000022441 3 1 2 124 1 78820433 78821652 AATGGGATCTGCAGTCCTG 60 78821740 78821758 ATCGATGTTCACCTCCAGC 60 NA InUTR Rattus norvegicus 81 Gnrhr ENSRNOG00000002011 ENSRNOT00000002755 1 1 1 80 14 23493743 23493762 TCATGCTAATCTGCAATGCC 59 23493804 23496668 GATTCAGCTGTAGTTTGCGT 59 NA Rattus norvegicus 81 AABR07052523.1 ENSRNOG00000028543 ENSRNOT00000031418 2 1 1 60 3 59408809 59408827 AACTATTGCACCTGCTCTG 58 59408851 59408869 GTCAATCTTCTCCTGCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-S3 ENSRNOG00000000777 ENSRNOT00000082116 3 1 2 96 20 3178446 3178621 ATGCTCATGTTCTAGGCAG 57 3179225 3179243 GCCCAGTCATTCAAATGTC 57 NA InUTR Rattus norvegicus 81 LOC680121 ENSRNOG00000009920 ENSRNOT00000013159 1 1 1 60 11 13500695 13500714 CATCCTCAATGTTTCTGCTG 57 13500735 13500755 GGTGATGGTGATCTTGTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680121 ENSRNOG00000009920 ENSRNOT00000013159 2 1 1 60 11 13499954 13499973 GGTCAACCATTTCATTGCTG 58 13499995 13500014 CTTGTTCTCACTGATGTCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lipn ENSRNOG00000057173 ENSRNOT00000078405 1 1 1 80 1 252384744 252386835 CCATGATCAAGCTTATGTTTGG 58 252386875 252386894 TGCAGACTGTGACATAAGAC 58 NA Rattus norvegicus 81 Vps72 ENSRNOG00000021081 ENSRNOT00000028625 1 1 1 80 2 196278155 196284101 GCTTCACTGAGGAGTCTGG 60 196284142 196284163 TGTCAAAGTCAGAGTCTACCTC 59 NA Rattus norvegicus 81 Gpbp1l2 ENSRNOG00000046675 ENSRNOT00000076891,ENSRNOT00000075582 2 2 2 60 2 238696057 238696075 CACCTTTGACAAACACGGA 59 238696096 238696117 ACGGCTTATTCCAAATCTACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl35a ENSRNOG00000031641 ENSRNOT00000042285 3 1 1 60 5 164923388 164923408 AATTGAAGGTGTTTATGCCCG 60 164923430 164923448 ATAAGCACACCTCTTGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mon1a ENSRNOG00000018502 ENSRNOT00000024966 3 1 1 84 8 116679454 116679472 GCACTATGGGTGTCATGGT 60 116679520 116680261 TTGTAGCCATCTGCATGGA 59 NA Rattus norvegicus 81 Rn60_X_0707.3 ENSRNOG00000051215 ENSRNOT00000076817 2 1 1 60 X 69744112 69744131 AAAGTGGTTGAGTTCTGCTG 59 69744071 69744089 CCTTTCTCATCGGGTACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmcc1 ENSRNOG00000011614 ENSRNOT00000042418 3 1 2 80 4 147924641 147948467 TACAGGAAGAGCGATATAGATGTG 60 147924584 147924603 TCAGGATCTCATTCTGGTGG 59 NA Rattus norvegicus 81 Pygm ENSRNOG00000021090 ENSRNOT00000028636 1 1 1 80 1 221760829 221761101 CTTTCCCTGATAAGGTGGC 58 221761145 221761163 CCACCAGAATCCTCATCAG 57 NA Rattus norvegicus 81 Pstpip2 ENSRNOG00000016987 ENSRNOT00000022833 2 1 1 80 18 74282484 74282656 AGAGGACTCAGACAAAGCG 59 74282698 74282718 TTAATGTGTTCACTCTGCCAG 59 NA Rattus norvegicus 81 Bmi1 ENSRNOG00000016585 ENSRNOT00000064257 1 1 1 95 17 85366775 85366793 GAAGTTGCAGATGAGGACC 58 85366852 85367026 TACTTTCCGATCCGACCTG 59 NA Rattus norvegicus 81 Fut11 ENSRNOG00000009274 ENSRNOT00000012300 2 1 1 81 15 4033674 4033692 ACACATGGACTGTCCAGTG 60 4031641 4033629 CCACATTTCCTTCCAGCTG 59 NA Rattus norvegicus 81 Pou5f1 ENSRNOG00000046487 ENSRNOT00000084526 3 1 1 80 20 3748655 3748882 GCGTTCTCTTTGGAAAGGT 58 3748593 3748614 TACACATGTTCTTAAGGCTGAG 58 NA Rattus norvegicus 81 Cd22 ENSRNOG00000024000 ENSRNOT00000033155,ENSRNOT00000078284 2 2 2 80 1 89315333 89316139 CAGAAGCGGAATATGGGTG 58 89315271 89315290 AACCAGCTCTGAGTAATGGA 59 NA Rattus norvegicus 81 Pirt ENSRNOG00000037852 ENSRNOT00000057503 3 1 1 145 10 53466895 53466913 AACTCATTGCCAGCTTCCT 60 53481266 53481284 GACCTCTCGTCTACCTCCA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07055446.1 ENSRNOG00000050691 ENSRNOT00000074535 2 1 1 191 7 3631078 3631097 TAATCGTGTGGAAACAACCG 59 3631448 3631470 GTATTAGATTCTTCTGGGACCTC 58 NA DesignNoJunction Rattus norvegicus 81 AABR07017772.1 ENSRNOG00000049108 ENSRNOT00000072686 1 1 1 81 15 30910068 30910186 GATAAACTTTCTCCTGAGAGTTGC 60 30910225 30910244 AGAGGCTTCTTCAGAGACAG 59 NA Rattus norvegicus 81 Rhobtb1 ENSRNOG00000000633 ENSRNOT00000000784,ENSRNOT00000087085 3 2 2 80 20 20641376 20641396 CATCTGCACCAACTACAACAG 60 20640839 20641335 AAGTACTCCTGGTTGTCTGC 60 NA Rattus norvegicus 81 Rn60_X_0750.2 ENSRNOG00000051310 ENSRNOT00000076781 2 1 1 60 X 74188562 74188581 TGCTTCCCAAGCTCTATGTC 60 74188604 74188622 ACCTTGCTATGAATGGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tgif2-ps1 ENSRNOG00000030925 ENSRNOT00000048929 2 1 1 60 17 49517069 49517088 TTCAGAAGCAGCAAGATCCA 60 49517111 49517129 TCTGAGACTAGAGGGAGCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir331 ENSRNOG00000035543 ENSRNOT00000053666 3 1 1 60 7 34881149 34881167 TTCTAGGTATGGTCCCAGG 58 34881107 34881125 TGGTTCTAGGATAGGCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abca3 ENSRNOG00000050057 ENSRNOT00000072789,ENSRNOT00000079700 2 2 2 80 10 13736555 13736682 TACTCTGAAGAAACGGAAGGT 59 13736724 13736742 AGCCAAATCAGGATCCCAG 60 NA Rattus norvegicus 81 Lilrb3l ENSRNOG00000053260 ENSRNOT00000087669,ENSRNOT00000087957 1 2 4 80 1 64011622 64011716 CCAGAAGAGGTCAAACCCA 59 64011989 64012009 CCATCCTTAGTTTCCATGTCC 59 NA Rattus norvegicus 81 Calml3 ENSRNOG00000031955 ENSRNOT00000046667 2 1 1 60 17 70072611 70072632 GTAGATGAAATGATACAGGCGG 59 70072651 70072671 ATTCCTCATAGTTCACTTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhx38 ENSRNOG00000014619 ENSRNOT00000019810 1 1 1 80 19 42118150 42119331 AAGTGGACTACAGGACAGAG 59 42119373 42119392 TCTTCTTCGCAAACTCACTG 59 NA Rattus norvegicus 81 Dab1 ENSRNOG00000007410 ENSRNOT00000082021,ENSRNOT00000009977 3 2 2 81 5 124021424 124143313 GGAAGAAAGGTCAGGATCG 58 124143358 124143376 ATCAGCTTGGCTTTGTACC 58 NA Rattus norvegicus 81 RGD1310495 ENSRNOG00000000589 ENSRNOT00000000720 1 1 1 80 20 45122560 45123855 CCACTCCCTTTCTTTCCCA 59 45122498 45122519 ACTAGAACATAGGTTCCGATGG 60 NA Rattus norvegicus 81 Itpk1 ENSRNOG00000008051 ENSRNOT00000010656,ENSRNOT00000080829 1 2 2 80 6 126460601 126460622 GTGAATCCATCTTCTTCAACAG 58 126455322 126460560 CCTCAATCTTGTCCAGCTC 58 NA Rattus norvegicus 81 Olr1657 ENSRNOG00000059328 ENSRNOT00000092195 3 1 1 60 17 44947689 44947710 CAGTTCCCACTTAATCGTTGTC 60 44947650 44947672 CTGGAGGTACATGTATATGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tas2r121 ENSRNOG00000005717 ENSRNOT00000007521 1 1 1 60 4 166868567 166868585 TCTACCCTTCAAGCCACTC 59 166868525 166868549 CTGGAATGCCTTAGATTAGAATGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxo42 ENSRNOG00000014305 ENSRNOT00000019195,ENSRNOT00000084737 1 2 2 80 5 159718313 159718333 TATCCCTTACACCAACCAGAG 59 159718375 159719596 GACAATGCAGTTCCACCAG 59 NA Rattus norvegicus 81 Clec4a3 ENSRNOG00000010018 ENSRNOT00000013308 3 1 1 80 4 155915377 155916293 GAAGAGCAGGATTTCCTGC 59 155915315 155915334 TTGTCGATGACCTGGATCTG 60 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000020656 ENSRNOT00000028039,ENSRNOT00000090164,ENSRNOT00000091573 1 3 3 80 8 117773126 117773148 GTAAAGTGGAGTCCATATTCCTG 59 117773185 117774817 GCCTGGATATGTCTACATTCTG 59 NA Rattus norvegicus 81 Olig1 ENSRNOG00000028648 ENSRNOT00000002827 1 1 1 60 11 31428594 31428612 CCATCTCGTCATCCTCCTC 59 31428636 31428654 GCAGGTTTAGGGAGAAGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sorbs1 ENSRNOG00000015658 ENSRNOT00000021289,ENSRNOT00000021114,ENSRNOT00000021229,ENSRNOT00000021347,ENSRNOT00000021226 3 5 5 80 1 259379105 259382228 CACAGGATTTATGTAGCTACCA 58 259379046 259379065 TATCTCCATCTCGGAGTTCC 58 NA Rattus norvegicus 81 Styxl1 ENSRNOG00000023366 ENSRNOT00000046343 3 1 1 81 12 23968600 23974929 GACGACTCTGAACTCTTACC 58 23974973 23974991 GGATATAGACAGGTTGGCG 58 NA Rattus norvegicus 81 Olr324 ENSRNOG00000021070 ENSRNOT00000028604 3 1 1 60 1 228537254 228537273 GACAGAGCCATCTCAATCAC 59 228537213 228537233 TGTAGATCATTGGGTTCAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl7a ENSRNOG00000047737 ENSRNOT00000044551 3 1 1 89 3 5460961 5460979 ATCATCAAGGGAAAGGCCA 59 5461032 5461263 CTTGTCTTCCGAGTTCACC 58 NA Rattus norvegicus 81 Tas2r144 ENSRNOG00000028130 ENSRNOT00000037194 2 1 1 60 4 71589531 71589552 TAAGACCAATGTACTCAACCTG 58 71589571 71589591 GAACAAAGGAATGAAGATCCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stx1a ENSRNOG00000029165 ENSRNOT00000049601 2 1 1 80 12 24688127 24691478 CCTCTGGGATCATCATGGA 58 24688065 24688084 ACTTGATGATCTCACTGTGC 58 NA Rattus norvegicus 81 Usp32 ENSRNOG00000027711 ENSRNOT00000036814,ENSRNOT00000081649 3 2 2 80 10 72304274 72304293 CAGCACTGATGACCAAAGAG 59 72303194 72304232 AGAATTCCTGAATGGCACGA 60 NA Rattus norvegicus 81 Pnmt ENSRNOG00000046057 ENSRNOT00000073486 1 1 1 81 10 86341865 86341993 CATCGAGGACAAGGGAGAG 59 86342037 86342056 CACATCAATGGGCAAGACTC 59 NA Rattus norvegicus 81 Cdh15 ENSRNOG00000027954 ENSRNOT00000033352 2 1 1 80 19 55683491 55683898 AAGGATGAGTTCTTTATGGAGG 58 55683937 55683957 CAGATCCTTGTCTTCTACCTC 57 NA Rattus norvegicus 81 Ero1lb ENSRNOG00000002609 ENSRNOT00000085669,ENSRNOT00000003526 2 2 2 80 17 90737506 90737526 AACAACACCAAAGAACTGGAC 59 90735508 90737467 TTTGCTTTCGTTACTTAGGGTG 59 NA Rattus norvegicus 81 Lgr4 ENSRNOG00000005715 ENSRNOT00000007681 3 1 1 80 3 101122369 101123608 ACTCAAAGTCCTAACACTCCA 59 101123650 101123668 GACTGCAAAGCACTCAGTC 59 NA Rattus norvegicus 81 Marveld3 ENSRNOG00000016291 ENSRNOT00000021866,ENSRNOT00000079730 2 2 2 82 19 41710582 41712638 GTTGGAGAGTGAACTGGCT 60 41712679 41712702 CTGACTGGTAATATTCCTCTTCCT 60 NA Rattus norvegicus 81 Tet1 ENSRNOG00000000277 ENSRNOT00000000302,ENSRNOT00000057939 2 2 2 80 20 27415891 27415910 TGAGAAGATAGTGTTCACGG 57 27415952 27426212 CCACTTCTTCTAATCACCCA 57 NA Rattus norvegicus 81 LOC100910429 ENSRNOG00000004588 ENSRNOT00000006050 2 1 1 80 7 129749878 129781997 CATAGGTAATACAGAAGGACTGTG 59 129782036 129782054 ATGCAGCAGACTTCTTCCT 59 NA InUTR Rattus norvegicus 81 LOC102554167 ENSRNOG00000030162 ENSRNOT00000043609 3 1 1 60 14 81043712 81043732 GAGGTCTCAGTCCTAGATCAG 59 81043754 81043772 TCAGCATTTCCTTGGTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stk36 ENSRNOG00000016913 ENSRNOT00000022839 1 1 1 80 9 81884814 81884833 TACACCGAGACATGAAACCT 59 81884876 81885528 CTCGGGCAAATCCAAAGTC 59 NA Rattus norvegicus 81 Ehd1 ENSRNOG00000043503 ENSRNOT00000054830 1 1 1 80 1 221661705 221661725 GTCTCTACCAAGAAATGCTGC 59 221661767 221664609 ATGTAGGCATGGACCTTGG 60 NA Rattus norvegicus 81 Cx3cl1 ENSRNOG00000016326 ENSRNOT00000022128 3 1 1 114 19 10648703 10648721 CGAAATGCAACATCACGTG 58 10647109 10648625 CTCGTCTCCAGGATGATGG 59 NA Rattus norvegicus 81 Apeh ENSRNOG00000029572 ENSRNOT00000045410 2 1 1 80 8 116870183 116870201 CCATGAAAGCTGTGCTTCG 60 116870030 116870139 GGTTCTTCTCCCAGACCTC 59 NA Rattus norvegicus 81 Slc2a8 ENSRNOG00000022274 ENSRNOT00000022327 1 1 1 80 3 12023193 12023211 GGTTCTGTTCACTGCTGTG 59 12022687 12023149 ATGATCACACCCGACAAGG 60 NA Rattus norvegicus 81 Gin1 ENSRNOG00000011962 ENSRNOT00000016028,ENSRNOT00000076441 2 2 4 99 9 111219327 111220646 TTAGGACCACTTCGAAGCA 59 111219246 111219264 ACTCATGGTGATCCTCCTG 59 NA Rattus norvegicus 81 Aadat ENSRNOG00000011861 ENSRNOT00000015974,ENSRNOT00000082392 3 2 2 80 16 32864336 32864354 GTCAACTACTCACCCAACG 58 32861323 32864294 TTCAAACACCTTACAGAGACC 58 NA Rattus norvegicus 81 Chrd ENSRNOG00000001750 ENSRNOT00000002394 1 1 1 80 11 83864470 83864488 CCTAGAGAAGATGGGTGGG 59 83864264 83864426 ACGCTTTGAAGGACATCAC 59 NA Rattus norvegicus 81 Vom1r73 ENSRNOG00000052492 ENSRNOT00000078886 1 1 1 60 4 87758447 87758466 CTCTATCTGTACCACCTGCC 59 87758487 87758507 GGTACTCGGACTGATAGTGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC679960 ENSRNOG00000003062 ENSRNOT00000004086 2 1 1 60 X 72449070 72449091 ACAAACAAGTTCTACATGCTGG 60 72449110 72449130 TTCTTTCCCACTGTAACACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr336 ENSRNOG00000021078 ENSRNOT00000028617 1 1 1 60 1 229417256 229417276 ACTGTTTGTCTATATGCTCCC 58 229417296 229417316 AGAAGCCATCTTGTCATAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Supv3l1 ENSRNOG00000000392 ENSRNOT00000000441,ENSRNOT00000080773 3 2 2 80 20 32059002 32060483 GCTCTTACAGTTTGCCAGG 59 32058940 32058958 AGAGGCCACTTGATGTACC 59 NA Rattus norvegicus 81 Zfp598 ENSRNOG00000012434 ENSRNOT00000065827 3 1 1 81 10 14044441 14044460 CAACAAACGGTCCTGTAAGC 60 14044504 14044622 GGTGGGAGGGTATTTGAGG 60 NA Rattus norvegicus 81 Exoc1 ENSRNOG00000002144 ENSRNOT00000090470,ENSRNOT00000091230,ENSRNOT00000059814 3 3 3 80 14 34166881 34166899 GAAAGCAACCACCTGATCC 59 34166624 34166839 CATGTGGTTCACAAGGAACTC 60 NA Rattus norvegicus 81 Rhox11 ENSRNOG00000028044 ENSRNOT00000035449 2 1 1 64 X 124232901 124236293 GTGGATGAACAGAAAGTAAAGG 57 124236312 124236336 CTCTGAATCTTCCTAAGTTTAGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Otub2 ENSRNOG00000009117 ENSRNOT00000012124 1 1 1 80 6 127295679 127297612 AGAGATCCTCAAGTTCAAAGAG 58 127297650 127297671 CTGAACTTATGTTCCTCAAAGC 58 NA Rattus norvegicus 81 Esco1 ENSRNOG00000014031 ENSRNOT00000033312 3 1 1 80 18 1805772 1812911 CTGTAAAGTATGTGGGCTGGA 60 1805712 1805735 CTTCAGGGAGAACCATTATTATCC 59 NA Rattus norvegicus 81 Rin2 ENSRNOG00000010131 ENSRNOT00000064695,ENSRNOT00000086409 1 2 2 80 3 140078178 140078199 CTTGAATTGGACACTGAAATCG 58 140078238 140082463 CAAGTAATAGCCTCCTTCTCC 58 NA Rattus norvegicus 81 Pfn3 ENSRNOG00000047752 ENSRNOT00000072298 2 1 1 152 17 9746753 9746771 TATCCGTGACTACCTGCTG 59 9746886 9746905 GTCTTATTGAGGATGCCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tsx ENSRNOG00000002925 ENSRNOT00000003922 1 1 1 80 X 74274456 74275074 CTCTGATCTGGATGACGCT 59 74276332 74276351 TGAAGAATATCTTGCAGGCG 59 NA Rattus norvegicus 81 Dnajc1 ENSRNOG00000000150 ENSRNOT00000000162 2 1 1 80 17 85064563 85064584 AGCTTTCACTAACCTTACATCC 58 85063987 85064524 CATAAATGGCCACCAATTGTC 58 NA Rattus norvegicus 81 Unc5b ENSRNOG00000000567 ENSRNOT00000038537 2 1 1 81 20 30357296 30357316 GAGGTACCCTTGGATCATGAG 60 30356380 30357253 TCTTGAGCCATTCCACCTC 59 NA Rattus norvegicus 81 Thg1l ENSRNOG00000005539 ENSRNOT00000007917 2 1 1 80 10 31049401 31049420 GGAAGAGTCGTGTTGTATCC 58 31048238 31049361 ATTATTGATGTGACAGTCTGCC 59 NA Rattus norvegicus 81 Adipor1 ENSRNOG00000004143 ENSRNOT00000005551 1 1 1 91 13 51259085 51259103 CTGTGATGTACATCACCGG 58 51259156 51259431 ATGAGACTGGAACCATATGTC 57 NA Rattus norvegicus 81 AABR07006259.1 ENSRNOG00000046782 ENSRNOT00000054811 1 1 1 80 1 227170047 227171030 GACTTTGAAGGTGAAGAGTCG 59 227169291 227169311 TGAGAGTCCTTATCCTTCACG 59 NA Rattus norvegicus 81 AABR07006259.1 ENSRNOG00000046782 ENSRNOT00000054811 2 1 1 80 1 227170050 227171033 GTCGACTTTGAAGGTGAAGAG 59 227169294 227169313 GAGTCCTTATCCTTCACGCT 59 NA Rattus norvegicus 81 Edaradd ENSRNOG00000002624 ENSRNOT00000003535 2 1 1 80 17 90813460 90814510 CTTTATCCTTTGCCATGTCAG 57 90820686 90820704 AAGTGACTGCATCACACTC 58 NA Rattus norvegicus 81 Otud1 ENSRNOG00000016950 ENSRNOT00000022734 3 1 1 60 17 86409344 86409362 TAGTTGGCTCAGCAATGGA 59 86409386 86409404 CTCTGGGTTAGGGTAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gdpd4 ENSRNOG00000028470 ENSRNOT00000034886 1 1 1 80 1 162961265 162961286 TCTAATGTCAACTCTGTGACCA 59 162961325 162969386 GGCAGACATCATGAAGAAGAG 59 NA Rattus norvegicus 81 Chchd1 ENSRNOG00000009297 ENSRNOT00000012372 1 1 1 82 15 4026539 4026557 ATCCTGAAACCCAACAAGC 58 4026383 4026493 GTGATACAAGTTGCCTCGC 59 NA Rattus norvegicus 81 Tmod2 ENSRNOG00000010447 ENSRNOT00000014124 3 1 1 81 8 82522669 82522688 CAATTTGCTCAACAATCCGA 57 82520957 82522625 TTTGACGACATTCCTCACC 58 NA Rattus norvegicus 81 Vom1r67 ENSRNOG00000052591 ENSRNOT00000073670 1 1 1 60 4 87353339 87353362 TAATTCTAGGTCACAGACCTAAGC 60 87353379 87353399 TGAATGAAGGTCAGTTGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Leng9 ENSRNOG00000018621 ENSRNOT00000025138 3 1 1 63 1 73721752 73721770 CAGAACTGGGCTTGATTCG 59 73721857 73721875 TACAGTCTCTTTGGTTGGC 57 NA DesignNoJunction Rattus norvegicus 81 Disc1 ENSRNOG00000019779 ENSRNOT00000057945 2 1 1 80 19 58040654 58040672 TGCAGGTACTCTGTGAGTG 59 58040712 58057073 CATGAGATTCCTCTTTCCATAGG 59 NA Rattus norvegicus 81 Gpr25 ENSRNOG00000008603 ENSRNOT00000011368 1 1 1 71 13 53137220 53137238 TCCTGGAATTCTAGCTGGG 59 53137167 53137185 CTCTACTTGGTCCAGGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ipo4 ENSRNOG00000019553 ENSRNOT00000026552 2 1 1 80 15 34310411 34310804 AGACAAAGACTGCTATACCCA 59 34310351 34310369 AGCAGCATTTCGAACAACC 60 NA Rattus norvegicus 81 Wdr59 ENSRNOG00000018967 ENSRNOT00000047179 1 1 1 80 19 43694187 43695531 CGAGTTATCAGCGACTTGG 58 43694125 43694147 GATGTAGATATAGGTGTCCACAG 58 NA Rattus norvegicus 81 Ttc22 ENSRNOG00000007189 ENSRNOT00000009582 3 1 1 81 5 126241532 126241550 AGCTGACCTTGAGGAAGTG 59 126241591 126241921 GCCCATGTAATAGTAAACCTGAC 59 NA Rattus norvegicus 81 RT1-Bb ENSRNOG00000032708 ENSRNOT00000084246 2 1 5 60 20 4047189 4047207 ATCCCTCCAATGTTACCCA 58 4047231 4047249 AGCTCAGTAGTGGAAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dok1 ENSRNOG00000007412 ENSRNOT00000010020 1 1 1 80 4 113865517 113865536 CACAGAGTCAAATCCTGGAG 58 113865286 113865475 AGAACATTACCTTGTCTCGG 57 NA Rattus norvegicus 81 Dok1 ENSRNOG00000007412 ENSRNOT00000010020 3 1 1 80 4 113865519 113865537 GCACAGAGTCAAATCCTGG 59 113865287 113865476 GAACATTACCTTGTCTCGGC 59 NA Rattus norvegicus 81 Map3k13 ENSRNOG00000025423 ENSRNOT00000078072,ENSRNOT00000035945,ENSRNOT00000083539 2 3 3 80 11 82765701 82768165 AAGTCTCAGGCTGAATGGA 58 82765639 82765660 TAATCGATGAATACAGGTCCCT 59 NA Rattus norvegicus 81 Blcap ENSRNOG00000024437 ENSRNOT00000033525 2 1 1 60 3 154041826 154041845 CATGTTCATGGGCTTCTACC 59 154041785 154041804 ACATATCGTGCAAGGTTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sgcb ENSRNOG00000002135 ENSRNOT00000089094,ENSRNOT00000002921 2 2 2 80 14 37116690 37120552 CAACCTGCTTATTACACTTGTC 58 37120592 37120611 CTCTCATGAAACTCCAAGCT 58 NA Rattus norvegicus 81 Ghdc ENSRNOG00000018906 ENSRNOT00000025590 2 1 1 80 10 88676088 88676387 GGGAGAACACAGACATGAC 58 88676026 88676047 TCTCTTCACTTTCTTTCTGCTG 59 NA Rattus norvegicus 81 Psmc4 ENSRNOG00000018994 ENSRNOT00000025819 2 1 1 80 1 84978418 84978599 CCATCTGTCAGGAGAGTGG 59 84978356 84978376 TGTATGCTTTCTCGAAGTCCT 59 NA Rattus norvegicus 81 Tmem65 ENSRNOG00000008934 ENSRNOT00000077440 3 1 2 76 7 98709085 98709103 CTTGCTCAAAGAGCTGCAC 60 98607054 98607073 TTTGGGTGAAGTTCATGAGG 58 NA DesignNoJunction Rattus norvegicus 81 Dsel ENSRNOG00000032307 ENSRNOT00000043890 1 1 1 60 13 1945672 1945690 GGCTCTTTGGATGAAGGTG 59 1945630 1945653 CATACTGTGTAACTGATTTGGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Efna2 ENSRNOG00000016203 ENSRNOT00000021709 1 1 1 95 7 12383056 12383266 TCCAACCAATGAGACCCTG 59 12382979 12382997 GTAGTGAGGAAGAGGTGGC 60 NA Rattus norvegicus 81 Scn4b ENSRNOG00000026679 ENSRNOT00000030152 2 1 1 81 8 49449142 49449160 TTCTCCAGCTGTTATGGCT 59 49449205 49449759 CGTCGATGAGAATCCTGGA 59 NA Rattus norvegicus 81 Lsm7 ENSRNOG00000019552 ENSRNOT00000026551 2 1 1 86 7 11724986 11725525 CAAGATGGCGGACAAAGAG 59 11725574 11725593 TGGAACTTGACTCGAATGGT 59 NA InUTR Rattus norvegicus 81 Mcf2 ENSRNOG00000003435 ENSRNOT00000051550 1 1 1 80 X 143246002 143246021 TTCAACGGACTTTCACAGAC 59 143245070 143245959 AGCTCAGCATAACAACTGG 58 NA Rattus norvegicus 81 Cdk5rap1 ENSRNOG00000015696 ENSRNOT00000021418 1 1 1 80 3 149853572 149853590 TCTGTAAGCAGATCCACCT 58 149851766 149853531 CTTCTCTTGAATATCCTCTCCG 58 NA Rattus norvegicus 81 Slc16a3 ENSRNOG00000036677 ENSRNOT00000054939 1 1 2 115 10 110139843 110144867 CTACCAAGGTGAAACCAGC 59 110144946 110144964 GAAACAGCCAAAGAGGACG 59 NA InUTR Rattus norvegicus 81 Lrrc47 ENSRNOG00000024796 ENSRNOT00000034284 3 1 1 80 5 171305030 171305442 CTGCACAGATACCTTCACCT 60 171305484 171305503 GAAAGAGATCACGTCTCCCT 59 NA Rattus norvegicus 81 Txndc2 ENSRNOG00000027916 ENSRNOT00000032330 3 1 2 82 9 113355586 113356148 GGGTAGCAATGAGTTCTTGG 59 113355523 113355543 TGGACATATGAAGCATGTTGC 59 NA Rattus norvegicus 81 Gng5 ENSRNOG00000038205 ENSRNOT00000058172 3 1 1 60 1 78546123 78546141 TTCTGTCTGCAGAATGCTC 58 78546162 78546183 GATTTGTACTTGAAGACACTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp639 ENSRNOG00000043053 ENSRNOT00000065518 3 1 1 98 2 118910629 118912492 CCTTCTCGATATTCAGATTCTTCTG 59 118912545 118912566 CTGTCTCATAGAGCAAACACTG 59 NA Rattus norvegicus 81 Thap2 ENSRNOG00000003993 ENSRNOT00000005443 1 1 1 89 7 58357905 58357923 ACAGGACAAACTCGAAGAC 57 58354954 58355575 CCTTGACTTGAGTTTCAAGC 57 NA Rattus norvegicus 81 RGD1305184 ENSRNOG00000038957 ENSRNOT00000045950 3 1 1 60 18 55667026 55667046 ATTACAGAAGCAGCCATTGAC 59 55667066 55667086 CTTCTAGCCAGACAAACTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Drd1 ENSRNOG00000023688 ENSRNOT00000030893 2 1 1 60 17 11101747 11101768 TCCAGTATGAGAGGAAGATGAC 59 11101788 11101807 GTCCATGCTACGCTAATCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Panx2 ENSRNOG00000055530 ENSRNOT00000089707 1 1 1 153 7 130043041 130049716 AGAACTTCGCAGAGGAACC 60 130049833 130049851 AACTTGTGCTCAAACAGCG 60 NA Rattus norvegicus 81 Cyfip1 ENSRNOG00000011945 ENSRNOT00000088459,ENSRNOT00000016376 2 2 2 80 1 114311448 114311466 GCTGAGGAGTATGAACGTG 58 114311510 114315478 GATCATGGCAATCACCTCC 58 NA Rattus norvegicus 81 Kcng2 ENSRNOG00000053640 ENSRNOT00000088054 1 1 1 225 18 76878921 76878939 CTTTCATGGAGCTTCTGGC 59 76836973 76836991 CGTTGATTATGACGTGGCG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr821 ENSRNOG00000046688 ENSRNOT00000044838 1 1 1 60 4 72670879 72670897 CTCCTTGTGGTGATGTCCT 59 72670921 72670939 CAGAGTAGTGTAGCGGGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sik3 ENSRNOG00000045931 ENSRNOT00000073507 1 1 1 80 8 50516389 50517125 GATGAGGAAGATGAAGAATGTGG 59 50517163 50517183 GGAGTTTAAATGCTGGCTACC 59 NA Rattus norvegicus 81 Sik3 ENSRNOG00000045931 ENSRNOT00000073507 2 1 1 80 8 50516390 50517125 ATGAGGAAGATGAAGAATGTGG 58 50517166 50517184 GGGAGTTTAAATGCTGGCT 58 NA Rattus norvegicus 81 AABR07034742.1 ENSRNOG00000001893 ENSRNOT00000002599 1 1 1 60 11 86421671 86421689 CTACCTTCCTCTCACTGCC 59 86421712 86421731 TGAAAGACCACCATGTAGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hnrnph1 ENSRNOG00000003399 ENSRNOT00000078505,ENSRNOT00000067188,ENSRNOT00000059190 2 3 3 80 10 35875730 35875749 GGGTATAACAGCATTGGCAG 59 35875791 35875901 ATCATAGCCTCCATAGCCTC 59 NA Rattus norvegicus 81 Rgp1 ENSRNOG00000016309 ENSRNOT00000064419,ENSRNOT00000021888 1 2 2 80 5 59082272 59082291 GGAAGAAGGATTCATGGCTG 59 59082334 59082537 TATACAGATGGAGGCTGCG 59 NA Rattus norvegicus 81 Fam71f2 ENSRNOG00000039383 ENSRNOT00000060353 1 1 1 80 4 56556712 56556731 TGTCAACTGATCCATTCTCC 57 56556771 56560465 CTTAGTGACCTGGATAAAGGTG 58 NA Rattus norvegicus 81 Rabgef1 ENSRNOG00000000895 ENSRNOT00000001196 2 1 1 80 12 29968775 29968796 GGAACAGTCAGAATGTACTCAG 59 29967324 29968734 TTCTCTGGAGGCACTTTCC 59 NA Rattus norvegicus 81 Rab27a ENSRNOG00000052499 ENSRNOT00000083957 3 1 1 80 8 79765847 79774081 TCGCAGAGAAGTATGGAATCC 60 79774122 79774141 GGAGCATCTCAATTGCTTGG 60 NA Rattus norvegicus 81 Klre1 ENSRNOG00000058714 ENSRNOT00000084823 1 1 1 80 4 163352118 163352784 ATATTCATCAGGAAGGACTCCA 59 163352823 163352843 CCTTGGAGAAGTAGTAACAGC 58 NA Rattus norvegicus 81 Vom1r68 ENSRNOG00000051513 ENSRNOT00000074184 2 1 1 60 4 87441262 87441281 CTCTATCTGTACCACCTGCC 59 87441304 87441322 GGTATTGGGACTGATCGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dot1l ENSRNOG00000032546 ENSRNOT00000051467 2 1 1 80 7 11801206 11801226 CAGAATCGTATCCTCAAAGCC 59 11800685 11801164 ATGATGGTGCCAATGTCAC 59 NA Rattus norvegicus 81 Cabyr ENSRNOG00000047436 ENSRNOT00000071392 1 1 1 84 18 4086404 4086513 TAGAGAAGGGAATTCGTCTCTG 59 4091685 4091703 CACTCCTTCTGCCCATCTC 60 NA Rattus norvegicus 81 Rn60_X_0743.2 ENSRNOG00000051181 ENSRNOT00000076218 1 1 1 60 X 73481460 73481481 TATGACAGCTATAACAACGGAG 58 73481502 73481520 AATTGCTTCCACTACCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dolpp1 ENSRNOG00000017663 ENSRNOT00000086789,ENSRNOT00000064557 1 2 2 97 3 8958396 8961468 ATACCCTGCAGGTGATCTG 59 8961526 8961547 GCTTGAATATGATGAGGGTCAC 59 NA Rattus norvegicus 81 rno-mir-542-1 ENSRNOG00000046738 ENSRNOT00000074302 1 1 1 60 X 158158901 158158922 GATCATCATGTCACGAGATACC 59 158158938 158158961 CCAGACCTTTCAGTTATCAATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pfn4 ENSRNOG00000050386 ENSRNOT00000074570 1 1 1 80 6 30031723 30031741 TATCTTCTGGTGGCAACCT 58 30028516 30031681 TAGATACTCTCCCAGCTTCTC 58 NA Rattus norvegicus 81 RGD1560436 ENSRNOG00000025065 ENSRNOT00000038013 2 1 1 80 5 142938617 142938773 ACCCTTGTGTCAGATATCCTG 59 142938813 142938833 CTCCAGATCTCCAGATACTGC 60 NA Rattus norvegicus 81 Gpx1 ENSRNOG00000048812 ENSRNOT00000073247 3 1 1 85 8 117117733 117117968 GGACATCAGGAGAATGGCA 60 117118017 117118035 GTAAAGTTGGGCTCGAACC 59 NA Rattus norvegicus 81 Oca2 ENSRNOG00000014465 ENSRNOT00000019498 1 1 1 80 1 114773045 114780936 GAGCTACAAAGAAAGCATAGGA 58 114780975 114780995 CATGGAGATGACAAATCCCAG 59 NA Rattus norvegicus 81 Oca2 ENSRNOG00000014465 ENSRNOT00000019498 2 1 1 80 1 114863777 114863798 TTGTCCTAATAGTGTGGGTCTC 59 114863837 114872339 GGACAGGAATCATTGTAGCAG 59 NA Rattus norvegicus 81 RGD1359108 ENSRNOG00000009478 ENSRNOT00000013181 3 1 1 80 5 50681150 50681168 GGTCATCCCTGTGATGGAG 60 50680593 50681111 AGTACTGTATCAGCTATATCGAGG 59 NA Rattus norvegicus 81 Cdca8 ENSRNOG00000031431 ENSRNOT00000048293 3 1 1 81 5 142931141 142932988 CTTGACTACTTTGCCCTAGG 58 142926243 142926264 TGTTTATCTCTGTGATGTCTCG 58 NA Rattus norvegicus 81 Cela1 ENSRNOG00000004725 ENSRNOT00000006351 1 1 1 80 7 142317874 142317894 GGACTTTCCGGAAACTAATGC 60 142315973 142317833 TGGAGGGAAATCTGAGATGG 59 NA Rattus norvegicus 81 Slc1a7 ENSRNOG00000011644 ENSRNOT00000016557,ENSRNOT00000090817,ENSRNOT00000077808,ENSRNOT00000072263 1 4 4 80 5 127607746 127607766 TATAAGTCAGAGCCTGGTACG 59 127607808 127610609 CAGCATGATGCCCATAGTG 59 NA Rattus norvegicus 81 Ndufb10 ENSRNOG00000014568 ENSRNOT00000019624 1 1 1 80 10 14090730 14090749 CATCACGGAATGCAAAGAGG 60 14090550 14090687 TGGTCCACTTTGAAGTCCC 60 NA Rattus norvegicus 81 Chd1l ENSRNOG00000017669 ENSRNOT00000043937 1 1 1 80 2 199727492 199733611 CAAGAGGAAGGAAGTGAACTG 59 199726866 199726887 CTCCTTAGAATAGTCTCTGCCT 59 NA Rattus norvegicus 81 AABR07058091.2 ENSRNOG00000061264 ENSRNOT00000074953 1 1 1 80 7 99758043 99758483 ACCTAGTTCAATGGGAGGG 58 99757981 99757999 TCCGGTCTGTTTCCTTCAG 59 NA Rattus norvegicus 81 Cep85l ENSRNOG00000000414 ENSRNOT00000063920,ENSRNOT00000087220,ENSRNOT00000078420 3 3 3 80 20 34588141 34588162 ATGTCAAGACAAAGAAGTGCAG 60 34585738 34588101 TGTTGTAAGCTCTGAACGGA 59 NA Rattus norvegicus 81 Defb25 ENSRNOG00000036895 ENSRNOT00000055406 2 1 1 60 3 148104456 148104474 TGGATTCTGCTCATTGTGG 58 148103789 148104432 ATTCAGTGCTCCCTGATGG 60 NA DesignRelaxed Rattus norvegicus 81 Defb25 ENSRNOG00000036895 ENSRNOT00000055406 3 1 1 61 3 148104453 148104471 ATTCTGCTCATTGTGGCTC 58 148103785 148104428 TTGAATTCAGTGCTCCCTG 58 NA DesignRelaxed Rattus norvegicus 81 Zdhhc6 ENSRNOG00000036576 ENSRNOT00000054681,ENSRNOT00000087680 2 2 2 80 1 276296972 276301983 GAAGAGAAGGCTAAAGATCGGA 60 276296913 276296936 CCATTTACTTCCCATATCGTAAGG 59 NA Rattus norvegicus 81 Rnf138 ENSRNOG00000015645 ENSRNOT00000021061 3 1 1 80 18 15153668 15153688 CACCAGACAACGTTTATTGGA 59 15149032 15153630 TCCTCATCTAGCTGAAGATTCAC 60 NA Rattus norvegicus 81 Hs6st3 ENSRNOG00000048243 ENSRNOT00000071685 3 1 1 60 15 105253498 105253517 ACTACATCACAATGTTGCGG 59 105253538 105253558 TGAACGTGTTTCCATTCACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sfr1 ENSRNOG00000012641 ENSRNOT00000016881 2 1 2 80 1 267505403 267506312 GCTGAGGAAGAAGGAAATCAG 59 267506353 267506372 AGGAATGTCAGGTGAAGTGG 60 NA Rattus norvegicus 81 AABR07002900.1 ENSRNOG00000047364 ENSRNOT00000075116 3 1 1 60 1 88621376 88621395 ACAACATCCTGTACAGACTG 57 88621417 88621831 TATAAACAGTAGGCAGTGCC 57 NA DesignNoJunction Rattus norvegicus 81 Npbwr1 ENSRNOG00000007640 ENSRNOT00000010032 2 1 1 60 5 13380643 13380664 CTTACTTCATCACCAGTCTGAG 58 13380685 13380703 AAGGCATAGAGGAAAGGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tpst1 ENSRNOG00000000900 ENSRNOT00000084968,ENSRNOT00000001200,ENSRNOT00000065868 1 3 3 80 12 30069029 30069050 GATATGATCCATACGCCAATCC 59 30051549 30068989 CTTTATGGACCCTCCTGGTG 60 NA Rattus norvegicus 81 Ptpmt1 ENSRNOG00000009723 ENSRNOT00000013584 3 1 1 95 3 79742857 79742875 CTGGTACTGGACGAGAACG 60 79739408 79742801 CACATTCTTCCATTCCTTCGAG 60 NA Rattus norvegicus 81 RGD1564827 ENSRNOG00000017806 ENSRNOT00000039754 3 1 1 80 17 4119586 4120632 TGTCAAGAACAGCATGGGA 59 4119524 4119543 ATTCCACAGTGGTTACCCTG 60 NA Rattus norvegicus 81 Il12rb2 ENSRNOG00000007270 ENSRNOT00000009883 1 1 1 80 4 98114095 98114946 ACACTTTACAGTTAACTGGACC 58 98114036 98114055 GACGACTACAATTCTGACGA 58 NA Rattus norvegicus 81 Syt1 ENSRNOG00000006426 ENSRNOT00000088950,ENSRNOT00000048880 2 2 2 80 7 50173798 50218847 AAAGAAGAGCAAGAGAAACTGG 59 50173739 50173759 AATGACAACAGTCAGTTTGCC 60 NA Rattus norvegicus 81 Elf3 ENSRNOG00000006330 ENSRNOT00000008754 2 1 1 82 13 52086658 52086676 GTTCCCACTCCTCTGACTC 59 52086440 52086612 AGGAAAGCCATCTCTAGGG 58 NA Rattus norvegicus 81 Tgds ENSRNOG00000009661 ENSRNOT00000067309,ENSRNOT00000088909 1 2 2 80 15 103319961 103321128 AATCAAGAAGACAGTTGAGTGG 59 103319902 103319921 ACTGGAAAGGGTTCTAATGC 58 NA Rattus norvegicus 81 Zfp866 ENSRNOG00000042580 ENSRNOT00000034415 1 1 1 80 16 21422365 21422784 CCTGGGAGAAATATGAGAGGT 59 21422824 21422844 TGTCAGAGTTTCTTCAACCTG 58 NA Rattus norvegicus 81 Midn ENSRNOG00000015434 ENSRNOT00000060698 3 1 1 72 7 12419019 12420968 AGTTTGACTGAGACCCAGC 60 12418965 12418983 TGTATTTCCGGAAGCCTCC 60 NA DesignNoJunction Rattus norvegicus 81 LOC682646 ENSRNOG00000049837 ENSRNOT00000050916 1 1 1 80 8 44499712 44501128 GGAGAAACATTGGTTCCCT 57 44499650 44499668 GGCTGTTTGTTTCTGATGG 57 NA Rattus norvegicus 81 Anapc4 ENSRNOG00000004130 ENSRNOT00000006093 3 1 1 80 14 60474621 60475482 AAGTCAGAAGAAGCACTTACAG 59 60474562 60474582 TGGAGTCCTTAAGGATGACTG 59 NA Rattus norvegicus 81 Olr737 ENSRNOG00000052463 ENSRNOT00000088256 3 1 1 60 3 79050358 79050376 TGGTTGTCTTGTTCTTCGG 58 79050316 79050334 GTGTAAGTGGAAGCAGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015180.1 ENSRNOG00000026134 ENSRNOT00000031524 1 1 1 80 14 48270918 48270936 CCCACGGTTACATTACACC 58 48270854 48270875 TTACTTCTCCACGACTGTCC 59 NA Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000086599,ENSRNOT00000004236,ENSRNOT00000085582,ENSRNOT00000004295 3 4 6 80 10 53751535 53751780 CTTCAAGCAGAGATACAAGGT 58 53751822 53751840 TTCTCAGAAGCCTTCTTGC 58 NA Rattus norvegicus 81 Hhipl1 ENSRNOG00000028390 ENSRNOT00000034883 2 1 1 81 6 132225002 132225020 TCCGTATCAGCGAGTTCAG 59 132225061 132228819 TCAATCTCCAGGATTATCCTCTC 59 NA Rattus norvegicus 81 Efcab1 ENSRNOG00000050091 ENSRNOT00000071986 2 1 1 80 11 90226239 90226920 TGATCATGGACAGAGTATTTCG 58 90226180 90226200 ATAATCCATGAACCCACTCTG 58 NA Rattus norvegicus 81 Mob3b ENSRNOG00000009453 ENSRNOT00000012519 2 1 1 85 5 50472702 50472721 TCAACACCTGCTACAAACAC 59 50439966 50472654 CATCTCTTTCAAGGGCTCC 58 NA Rattus norvegicus 81 Celsr1 ENSRNOG00000021285 ENSRNOT00000036025 3 1 1 80 7 126813260 126817503 CTGTGAACAAGCTATGCCA 58 126813198 126813216 GAGATGGTGATGTCGAGGT 59 NA Rattus norvegicus 81 Klrb1b ENSRNOG00000007310 ENSRNOT00000009594,ENSRNOT00000085887 2 2 3 104 4 161953904 161953923 AATAAGCAGCTCATTCTGGA 57 161950723 161953840 CCAGTGATGCTTAATACATCAG 57 NA Rattus norvegicus 81 Rn60_X_0744.1 ENSRNOG00000048213 ENSRNOT00000076109 2 1 1 60 X 73581611 73581629 CTCCTACATGTTGGTGGAC 58 73581653 73581671 GAGGAAAGTCACCTTGAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1639 ENSRNOG00000050975 ENSRNOT00000044250 2 1 1 60 15 28785522 28785540 TCTGAAACTAGCCTGTGCC 60 28785480 28785498 TCCGATGTCCACAAAGGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mfn2 ENSRNOG00000046447 ENSRNOT00000065985 3 1 1 80 5 164581682 164585470 CTTCCTTGAAGACACCCAC 58 164581620 164581638 AGGTACCCTTTGACATCCA 58 NA Rattus norvegicus 81 Trappc12 ENSRNOG00000009039 ENSRNOT00000029859 2 1 1 80 6 47961295 47961315 AGTAATCAAGTACTACCCGGA 58 47956849 47961255 TTTATGTCTCCAATCTGGAGG 57 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000085008,ENSRNOT00000028237,ENSRNOT00000092008,ENSRNOT00000085245 1 4 7 88 1 83714840 83714858 TATGAGGACACGGAGTTCC 59 83714910 83716149 ATGTCATAGAGCTGCCCTG 59 NA Rattus norvegicus 81 Dhcr24 ENSRNOG00000006787 ENSRNOT00000009402 2 1 1 80 5 126168133 126173509 ACACCAAGAAACAGATTGTGC 60 126173551 126173569 TCCAGCCAATGGAGTTCAG 60 NA Rattus norvegicus 81 Panx1 ENSRNOG00000010060 ENSRNOT00000013577,ENSRNOT00000083395 3 2 2 80 8 13584789 13605437 AGATCTCCATCGGTACCCA 60 13584727 13584745 AGTAAGAGTCCACGAAGGC 59 NA Rattus norvegicus 81 Bhlhe23 ENSRNOG00000010312 ENSRNOT00000013690 2 1 1 62 3 176281596 176281615 GAACTACATCCTCATGCAGG 58 176281553 176281571 TTGAGATAGGCCACCAAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr357 ENSRNOG00000053559 ENSRNOT00000073539 1 1 1 60 1 230056852 230056874 TTATCTTGGACTCCAGACTACAC 59 230056893 230056912 GCAAAGGAGAGGTTACTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbc1d22a ENSRNOG00000017057 ENSRNOT00000022945 1 1 1 80 7 127189312 127223131 AGTACACAGACCAGGAGGA 59 127223174 127223193 TATCAGCCTCAATGTTGCGA 60 NA Rattus norvegicus 81 Rragd ENSRNOG00000007331 ENSRNOT00000068028 3 1 1 80 5 48240188 48245248 GACTCCCAGGATGACTATATGG 59 48245285 48245307 GATATCAGTGTTCACCTTGTAGG 59 NA Rattus norvegicus 81 Stau1 ENSRNOG00000007781 ENSRNOT00000010633 2 1 1 80 3 163717760 163717778 CCTGTGAAACATGATGCCA 59 163714675 163717718 TCCATTTACCTCTAGCCTCTC 59 NA Rattus norvegicus 81 LOC100909538 ENSRNOG00000048428 ENSRNOT00000074545 1 1 1 62 15 2733221 2733239 CAGGGTGGATGAAGTCTGG 60 2734068 2734086 AATCGGTTATTTGCCGTGG 59 NA DesignNoJunction Rattus norvegicus 81 Cask ENSRNOG00000060946 ENSRNOT00000091382,ENSRNOT00000082316,ENSRNOT00000084218 1 3 3 83 X 10141561 10141579 TGGTGTTGGGAGAAGACAC 60 10141626 10144017 CTGGTTGTATGCGGAATGG 59 NA Rattus norvegicus 81 Smarcad1 ENSRNOG00000006391 ENSRNOT00000008585 2 1 1 80 4 95936297 95936315 TCCTTTACTACACCGCCAG 59 95936358 95937546 CAATGCGTAGGTTCCTTCAG 59 NA Rattus norvegicus 81 Apobr ENSRNOG00000017403 ENSRNOT00000091065,ENSRNOT00000023555 2 2 2 119 1 197999414 197999730 GAGCACTGGATTCCTTCAG 58 197999812 197999831 CTACAACCTTCCCTTCAGTC 58 NA Rattus norvegicus 81 Pawr ENSRNOG00000005917 ENSRNOT00000008222 3 1 1 81 7 51352559 51352578 AGATCGAGAAGAGGAAGCTG 59 51303197 51352516 TACTCATCTAAGCACTCCGC 59 NA Rattus norvegicus 81 LOC691354 ENSRNOG00000023452 ENSRNOT00000031978 3 1 1 80 5 165465122 165465140 GTGTTCCCATGGATCCTCC 60 165465183 165467614 CTCGACCTTCTCTGTCAGAG 59 NA Rattus norvegicus 81 Cts8l1 ENSRNOG00000048693 ENSRNOT00000073585 1 1 1 80 17 4063825 4063846 CATAACAGGGAGAATTCCTTGG 59 4063883 4063999 GAATTCTTCATCAGTCAGGTCAG 59 NA Rattus norvegicus 81 Cdk2 ENSRNOG00000006469 ENSRNOT00000031963 3 1 1 81 7 3126195 3126468 GCTTGTTATCTCAAATGCTGC 59 3126134 3126152 TCCTGGAAGAAAGGGTGAG 59 NA Rattus norvegicus 81 Ankrd54 ENSRNOG00000010821 ENSRNOT00000014413 2 1 1 80 7 120287062 120287082 AAGTCGAAACTGAACATCCTG 59 120286172 120287020 GTGGATGATCTGCTTCACC 58 NA Rattus norvegicus 81 Olr475 ENSRNOG00000030468 ENSRNOT00000052240 3 1 1 60 3 73391029 73391050 ATTCATGTATCTCAGAAGGCCA 59 73391071 73391089 TACAGCCACCATCTTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC299277 ENSRNOG00000037743 ENSRNOT00000057298 1 1 1 84 6 127882818 127882836 TCATGGACGTGTTCAACAC 58 127872847 127882772 GTGTTGTGGATCATCTGAGAG 59 NA Rattus norvegicus 81 LOC299277 ENSRNOG00000037743 ENSRNOT00000057298 3 1 1 86 6 127882818 127882836 TCATGGACGTGTTCAACAC 58 127872845 127882770 CAGTGTTGTGGATCATCTGAG 59 NA Rattus norvegicus 81 Orc5 ENSRNOG00000011519 ENSRNOT00000090600,ENSRNOT00000015426 2 2 2 80 4 9170099 9170120 TGGATAAAGCTGACTATCTGAG 57 9170160 9174026 TTCTGTCAGTCAACTCTTGC 58 NA Rattus norvegicus 81 Sod3 ENSRNOG00000003869 ENSRNOT00000005155 1 1 1 86 14 60960193 60964216 CTTGTCAGGTGTGGAACCT 60 60960125 60960143 CATGGTCCAGGTGACAGAG 60 NA InUTR Rattus norvegicus 81 Olr1638 ENSRNOG00000011615 ENSRNOT00000015439 2 1 1 60 15 28446600 28446618 CACACCCATGTATTCCCTC 58 28446558 28446579 CGTAGAAGAGTAGCAGAAATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Meiob ENSRNOG00000014711 ENSRNOT00000060551 2 1 1 81 10 14194180 14194200 CAAATTTCAGAACTGCATGGC 59 14194239 14197295 GATATTGGCTTCTGGTGTATCTG 59 NA Rattus norvegicus 81 Carm1 ENSRNOG00000031129 ENSRNOT00000048245,ENSRNOT00000041577 3 2 2 80 8 22620401 22620419 TCCCTCGGAGAATATGTGG 58 22620463 22620586 TAGGCAGTAGGCATTCCAG 59 NA Rattus norvegicus 81 LOC100909747 ENSRNOG00000048028 ENSRNOT00000071957 1 1 1 60 1 76651883 76651901 CCACGAGGAAGACTTTGAG 58 76651841 76651860 TTGATACCACTGGATAGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam196b ENSRNOG00000032329 ENSRNOT00000050610 3 1 1 60 10 19368124 19368142 TTCCTCCATTCCAAGGCAG 60 19368165 19368184 ATTACTGGCACCTATCTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccl27 ENSRNOG00000039530 ENSRNOT00000060594 2 1 1 81 5 58159476 58159495 GACTACTGAGGAGGATCGTC 59 58159239 58159432 GTCAGGTGAAGCACAACAG 59 NA Rattus norvegicus 81 Prpf38a ENSRNOG00000009451 ENSRNOT00000012635 2 1 1 80 5 128181763 128183014 CAGAAATGGAGAGTTTGAACTG 58 128181704 128181723 ATGATATCACAGACTCGCTC 57 NA Rattus norvegicus 81 Tbcc ENSRNOG00000048291 ENSRNOT00000073079 3 1 1 60 9 16405418 16405437 CTCCGGTTTAGATAGGAGCA 59 16405377 16405395 GGCTAGCCAATTGAAATCG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1305350 ENSRNOG00000007968 ENSRNOT00000010558 2 1 1 84 5 164755754 164755775 CCACCTCTTCCTCTTTAAACTC 59 164755820 164756987 ACTGGGATCTTCCTTGCTC 59 NA Rattus norvegicus 81 Olr1002 ENSRNOG00000046978 ENSRNOT00000050967 2 1 1 60 7 6216513 6216534 TCTTAAACCATCAGTCAAGCAG 59 6216552 6216573 GGTATTGAGCACAGAAATTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1079 ENSRNOG00000049781 ENSRNOT00000073334 2 1 1 60 7 13488426 13488446 CAGTTCAAGGGAAGTACAAGG 59 13488386 13488405 AAGGAGACAATGGAAAGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abca14 ENSRNOG00000043296 ENSRNOT00000071302,ENSRNOT00000055063,ENSRNOT00000073255 1 3 3 80 1 190011036 190011054 ATGTCAAAGGATCTGAGCG 58 190011097 190011709 TATCACCACCTTAGTGTCCC 59 NA Rattus norvegicus 81 Abca14 ENSRNOG00000043296 ENSRNOT00000071302,ENSRNOT00000055063,ENSRNOT00000073255 2 3 3 80 1 190011039 190011057 TCAAAGGATCTGAGCGGAG 59 190011098 190011712 AAGTATCACCACCTTAGTGTCC 60 NA Rattus norvegicus 81 Fzd5 ENSRNOG00000014678 ENSRNOT00000019698 3 1 1 60 9 71444612 71444633 CCACATTCACTATGAGACTACC 58 71444573 71444595 GTAGACTAAGAGGAAGACGACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1393 ENSRNOG00000047749 ENSRNOT00000049754 3 1 1 60 10 34663037 34663060 CAATCCTTTGATCTATACCCTGAG 59 34663079 34663097 TAGCATCTTCCACAGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gbp3 ENSRNOG00000036885 ENSRNOT00000040856 3 1 1 80 2 248481000 248481437 GGACCAGCTGCAATATGTG 59 248480938 248480956 GAAGCCTCAACTCCATTGC 59 NA Rattus norvegicus 81 Mthfd2 ENSRNOG00000010833 ENSRNOT00000014603 2 1 1 80 4 115007707 115007725 CACACTCCCAAAGAACAGC 59 115007348 115007664 GATGAGGTTTGGAATGCCAG 59 NA Rattus norvegicus 81 Stat5a ENSRNOG00000019496 ENSRNOT00000026662 1 1 1 80 10 88781463 88781560 CCCACTTCAGAAACATGTCAC 60 88781602 88781620 TGAACTTCTCCTCCGTCAC 59 NA Rattus norvegicus 81 Stk40 ENSRNOG00000025679 ENSRNOT00000035597 3 1 1 82 5 144146981 144147350 CATTGCATCTTGGCAGTCC 60 144147396 144147414 CAGAGCTGCTCATTTGGTC 59 NA Rattus norvegicus 81 Ccdc8 ENSRNOG00000027936 ENSRNOT00000029810 2 1 1 80 1 78935071 78935092 GCAGTTAATCCAAGAACAGAGG 59 78935133 78935181 CTTTGGACTAGCCTCTGCT 59 NA Rattus norvegicus 81 Rbm15b ENSRNOG00000014161 ENSRNOT00000018995 2 1 1 60 8 115618631 115618650 GACTTCTCACAGCAGTACCT 59 115618590 115618609 GTTCTTCCTCTAACTTGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr209 ENSRNOG00000045692 ENSRNOT00000041335 2 1 1 60 1 170763331 170763350 GGTTCTTTCATCTTGGTCGG 59 170763290 170763308 CAGCACAGAGCATTTCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adck5 ENSRNOG00000030334 ENSRNOT00000077588,ENSRNOT00000044893 1 2 2 80 7 117659245 117659263 TTGGCTTCTTCATCTCCCT 58 117659307 117659445 CATACTTCGGGCTGTTCTC 58 NA Rattus norvegicus 81 Med18 ENSRNOG00000047303 ENSRNOT00000072028 1 1 1 90 5 150653139 150653158 AGTCACCATGATGCCAGTC 60 150650348 150650368 CAGACTTTCCAAACTGTGGTC 60 NA Rattus norvegicus 81 Afmid ENSRNOG00000050205 ENSRNOT00000073809 2 1 1 80 10 106837186 106837204 TTTCCGGATGAGGATTCCA 58 106837330 106839295 GTCATCTTTACTTCCACTCTGC 59 NA Rattus norvegicus 81 Nsd1 ENSRNOG00000016680 ENSRNOT00000060928 3 1 1 80 17 9855237 9855256 CAGAAGTGGTCTGTGAATGG 59 9851612 9855196 GAAGGTAAGTTCAGTTCCTGC 59 NA Rattus norvegicus 81 Col6a5 ENSRNOG00000010663 ENSRNOT00000082992,ENSRNOT00000038160 2 2 2 80 8 114604196 114606644 GCTCTGATAAAGGATGTGAAGAC 59 114604138 114604159 AATTTGTAAGCCCTATGCTTCC 59 NA Rattus norvegicus 81 Klrc1 ENSRNOG00000055196 ENSRNOT00000085671 3 1 1 82 4 163458988 163459008 CTGGATTCTTTCGAAAGAGCA 59 163458621 163458947 CAGCATCTCTGTTATCTTTGGT 59 NA Rattus norvegicus 81 AABR07025743.1 ENSRNOG00000033638 ENSRNOT00000041833 2 1 1 60 16 47756692 47756710 TCCTCAGAAGATGGGAGAG 58 47756648 47756668 CACATGAAGTCTCTGATGAGG 58 NA DesignNoJunction Rattus norvegicus 81 Spata9 ENSRNOG00000012770 ENSRNOT00000017068 1 1 1 93 2 2729974 2730159 CTTCTCTGGAAGATTTGAGGG 58 2730209 2730232 CTGTGATAATCTTAGGATGGTAGG 58 NA Rattus norvegicus 81 Spata9 ENSRNOG00000012770 ENSRNOT00000017068 3 1 1 94 2 2729973 2730159 ACTTCTCTGGAAGATTTGAGGG 60 2730208 2730232 CTGTGATAATCTTAGGATGGTAGGA 60 NA Rattus norvegicus 81 Cramp1l ENSRNOG00000024635 ENSRNOT00000022050 1 1 1 80 10 14345782 14345800 TTACAACCACGGAACAACC 58 14344791 14345738 CAGCTCCACAATCATCCTG 58 NA Rattus norvegicus 81 AABR07015559.1 ENSRNOG00000055015 ENSRNOT00000086658 2 1 1 80 14 63415748 63415766 TCTGTGGAGTTCTCTGAGC 59 63415807 63439437 AGATCTTTACCAATCCTCTCCT 58 NA Rattus norvegicus 81 AC115420.2 ENSRNOG00000047447 ENSRNOT00000071027 3 1 1 62 4 157374858 157374876 GAAACCGAAGTGAGACGGA 60 157374902 157374920 TACCCACACTAGACCTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Glyr1 ENSRNOG00000003065 ENSRNOT00000004159 2 1 1 80 10 10739539 10744075 AAAGGATGAGAAGGACCTCAC 60 10744114 10744135 CATTTAAATGCAGCCATTGGTC 59 NA Rattus norvegicus 81 Slc39a6 ENSRNOG00000028703 ENSRNOT00000079381,ENSRNOT00000036306 2 2 2 80 18 16541462 16541480 ATTCTGTGAGTGAGCCCAG 59 16539870 16541419 TTGTTGCATTGAAGCACTCC 60 NA Rattus norvegicus 81 AC118496.1 ENSRNOG00000054817 ENSRNOT00000087847 1 1 1 80 6 103452388 103452408 CCAGTGAAGAACTCTCACCT 59 103452450 103452469 CTGAGGATTCTTCCTTCCCA 59 NA Rattus norvegicus 81 LOC100364433 ENSRNOG00000047993 ENSRNOT00000074329 1 1 1 60 7 6625583 6625602 TGCTAGTCAGAGGTCAAAGG 59 6625542 6625563 GATGGAGATGACAATCATGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Neu3 ENSRNOG00000018106 ENSRNOT00000024420 1 1 1 80 1 164810065 164814475 GTGAGCTGAGAAGTCATGG 58 164810003 164810023 AATCCTGTTCTGTTCTTCCTG 58 NA InUTR Rattus norvegicus 81 Sp1 ENSRNOG00000014084 ENSRNOT00000019403 1 1 1 80 7 144017447 144017465 GGGTACTTCAGGGATCCAG 59 144017509 144032529 TGAGCTCCATGATCACCTG 59 NA Rattus norvegicus 81 Coasy ENSRNOG00000019918 ENSRNOT00000027061 2 1 1 80 10 88995869 88995887 CTATGCTGCTTGAAGCTGG 59 88995931 88996062 GACGTACAGCCTCAGACTC 60 NA Rattus norvegicus 81 Olr984 ENSRNOG00000049589 ENSRNOT00000047489 1 1 1 60 7 4292661 4292682 GAATTCCATCTACTAGCCAGAG 58 4292622 4292642 ACAATCATGTGAGAGGAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307621 ENSRNOG00000023230 ENSRNOT00000034756 2 1 1 80 6 86656878 86658240 GGAAATCTGAAGGTCTCGC 58 86658945 86658963 ATAAAGTGGCACCTTCCAG 57 NA Rattus norvegicus 81 Riok2 ENSRNOG00000012692 ENSRNOT00000017165 2 1 1 82 1 59137129 59137147 AGTTCCAAAGCCAGTTGAC 58 59137191 59138260 CATGATGTATCTGACACAGGG 58 NA Rattus norvegicus 81 Rxrb ENSRNOG00000000464 ENSRNOT00000084638,ENSRNOT00000087895,ENSRNOT00000086978 3 3 4 64 20 3827130 3827148 TTCCTCCCTACCTCTGGAC 60 3827348 3827367 CAATGAGGAGCTCATTCCAG 59 NA DesignNoJunction Rattus norvegicus 81 Trim72 ENSRNOG00000022099 ENSRNOT00000029994 3 1 1 80 1 199454317 199454770 TTCCTCATGAAATTCTGCCT 57 199455622 199455640 GATATCTAGCCTTGCTGGG 57 NA Rattus norvegicus 81 Tmem88b ENSRNOG00000036869 ENSRNOT00000055343 2 1 1 90 5 173231747 173232659 CACTCGAGGGTTCATCCAG 60 173231675 173231696 AGAGGAATCCGAACACTATGAG 60 NA Rattus norvegicus 81 Wdr17 ENSRNOG00000048847 ENSRNOT00000074885,ENSRNOT00000081994 2 2 2 80 16 39909392 39912130 GATTCCAATGTGCTTCCCA 58 39914067 39914087 TGTACTTCCCTATCAGGAGTC 58 NA Rattus norvegicus 81 Echdc2 ENSRNOG00000029333 ENSRNOT00000047653 1 1 1 80 5 127788495 127789056 CTATGCCCAGAACATCCCA 59 127789100 127789118 CCCACAAATTTGGGAGGTC 59 NA Rattus norvegicus 81 AC109901.1 ENSRNOG00000053208 ENSRNOT00000045807 3 1 1 80 11 85633272 85633413 CCTTCATCACTTAACAGGGTC 59 85633454 85633473 ACTGTGATTCCTAGAGACGT 58 NA Rattus norvegicus 81 Slc4a8 ENSRNOG00000028879 ENSRNOT00000040890,ENSRNOT00000065379 1 2 2 80 7 142454962 142457085 AGCGGTCTTAAAGTTTATCCCA 60 142457122 142457144 TGGATTCCTTGTAGAGAAGAGAC 59 NA Rattus norvegicus 81 Olr1540 ENSRNOG00000049405 ENSRNOT00000060892 3 1 1 60 11 43330462 43330484 CTTCTCTTCATGTATCTGCTTCC 59 43330503 43330522 AGTCCATCATGTCTTCATCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065778.1 ENSRNOG00000032671 ENSRNOT00000041331 2 1 1 60 6 140980171 140980189 AGTTGTTGCTAAACTGGGT 57 140980005 140980149 TTCACCTCACACTGAATACCA 59 NA DesignNoJunction Rattus norvegicus 81 LOC691895 ENSRNOG00000045864 ENSRNOT00000046759 3 1 1 60 X 34162658 34162676 TCAAGCGATTCTTCCTGAG 57 34162616 34162636 AACACAAACATCTCCACACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr86 ENSRNOG00000025735 ENSRNOT00000079770,ENSRNOT00000040373 2 2 2 153 4 6947747 6947875 AACTGTCTCCAGGTACACG 59 6947992 6948010 CCACCTTGTTGCTGAAGAG 59 NA Rattus norvegicus 81 Fgd5 ENSRNOG00000010213 ENSRNOT00000051022 1 1 1 80 4 123952348 123953615 CTGTCTGCAAGCTCATGTG 59 123953658 123953677 CTGAGTCTTGTAGTCCTCCG 59 NA Rattus norvegicus 81 Scd4 ENSRNOG00000032554 ENSRNOT00000017834 3 1 2 80 1 264097295 264097315 AGCCATCGAACCTATAAAGCA 60 264097357 264098594 CACATCGTTCTGGAAAGCC 59 NA Rattus norvegicus 81 Cyp4a8 ENSRNOG00000008842 ENSRNOT00000012448 3 1 1 80 5 133982985 133983004 CCCTTATCGATTTGCACCAG 59 133980046 133982942 CCAATGCAGTTCCTTGCTC 60 NA Rattus norvegicus 81 Fam219a ENSRNOG00000039559 ENSRNOT00000060642 2 1 1 82 5 57900743 57900764 CCTAATAAAGGCTACTCTTCGC 59 57900042 57900700 AAATCGTCATCGCTGTCTG 58 NA Rattus norvegicus 81 Atp6ap2 ENSRNOG00000003858 ENSRNOT00000005138 1 1 1 80 X 11145602 11145623 TGTCAAATCATTCGACACATCC 59 11138096 11145562 TAGGGACTTTGGGTGTTCTC 59 NA Rattus norvegicus 81 AABR07029056.1 ENSRNOG00000048608 ENSRNOT00000074890 1 1 1 80 10 4448231 4448999 GATCAGAGTGTCTTTGCCT 57 4449040 4449061 GGTGAATCACATTCATCTTTGG 58 NA Rattus norvegicus 81 Atp6v0e1 ENSRNOG00000003269 ENSRNOT00000004653,ENSRNOT00000077386 1 2 2 82 10 16774568 16774591 ACCATCTGGTATCTGAAGTATCAC 60 16770296 16774527 GGCTTCTAGCTGTGACCTC 60 NA InUTR Rattus norvegicus 81 Elp2 ENSRNOG00000015301 ENSRNOT00000020601 1 1 1 80 18 16556761 16557413 CAACCTTCGGTAGAGACCT 58 16557454 16557475 TCGGTTTCATATACAGTCTCCA 59 NA Rattus norvegicus 81 Egfl6 ENSRNOG00000004275 ENSRNOT00000068337,ENSRNOT00000087621 3 2 2 80 X 29462503 29465920 GTGCCTAGATATCGATGAATGTG 59 29465957 29465978 TAGCTTCCAAATGTGTTCACAC 60 NA Rattus norvegicus 81 Xpot ENSRNOG00000007088 ENSRNOT00000009645 1 1 1 80 7 63708722 63708741 TCTTTGAAACTGTCGTTCGC 60 63708215 63708684 CTAAGAAAGCCATTAGTACACAGG 59 NA Rattus norvegicus 81 Ubqln1 ENSRNOG00000019282 ENSRNOT00000061233 1 1 1 80 17 6860352 6862844 TCCTTTGGTTTAGGTGGAC 57 6862886 6862906 CTGTAGTTCAGAGAAGTTGGT 57 NA Rattus norvegicus 81 Epx ENSRNOG00000008707 ENSRNOT00000011735 2 1 1 80 10 75161599 75162127 GACGGAGACAGATTCTGGT 59 75161537 75161558 AGATAAAGAAATTCGCCTCAGG 59 NA Rattus norvegicus 81 Med16 ENSRNOG00000011315 ENSRNOT00000080089,ENSRNOT00000015257 3 2 2 98 7 12629115 12629585 CACCGATGTTGACATCGAC 59 12629647 12629665 CATTGTAGCAACTGCTGCA 59 NA Rattus norvegicus 81 LOC100912849 ENSRNOG00000015386 ENSRNOT00000020640 3 1 1 81 9 15585892 15585910 TTCAAGAGCCCAGAAGAGC 60 15585950 15603779 GATTAAGGATTTCTGTGACTCCTG 59 NA Rattus norvegicus 81 AABR07065693.1 ENSRNOG00000045786 ENSRNOT00000070810 2 1 1 119 6 139412494 139412512 CTCTCAAATCCCGACTGAG 57 139412595 139412707 GAAGTGATCTGTGTCTGGC 58 NA Rattus norvegicus 81 Cfap70 ENSRNOG00000007046 ENSRNOT00000035345 2 1 1 80 15 4289493 4289511 CAACATTGACCTCAACCCA 58 4289555 4297578 ACTTCAGTCACCGTTAGGA 58 NA Rattus norvegicus 81 Zdhhc19 ENSRNOG00000025055 ENSRNOT00000033026 1 1 1 80 11 71512701 71513023 GGGTCCCAATTACATGTCTG 58 71512640 71512659 GGGTGTTTAGTCTTCTCCTG 58 NA Rattus norvegicus 81 Crispld1 ENSRNOG00000017773 ENSRNOT00000024199 1 1 1 80 5 689516 689534 CCATGACACTCATGTTCGG 59 689077 689473 ACAATCTGAGACATCTGCTG 58 NA Rattus norvegicus 81 Trpm4 ENSRNOG00000020714 ENSRNOT00000041513 2 1 1 80 1 101323161 101323179 AGAGAAATACACGGAGCCC 59 101322866 101323120 AGATCTTAGGGATCCAACTCTG 59 NA Rattus norvegicus 81 Usp49 ENSRNOG00000013866 ENSRNOT00000018550 3 1 1 80 9 15322284 15326862 AGTGTAACAGCAAACGACG 59 15322222 15322245 GTCTGTAGATCATTAACTGCTTCC 59 NA Rattus norvegicus 81 Clec4f ENSRNOG00000013137 ENSRNOT00000017643 2 1 1 80 4 115330663 115330682 GGAGACAGAAGCAGAATGAG 58 115329285 115330622 GGGAACAATTGTCAGATCCAG 59 NA Rattus norvegicus 81 Olr880 ENSRNOG00000042424 ENSRNOT00000067319 1 1 1 60 7 3751904 3751928 CTCATTTACCACTGTATGTATTCCC 60 3751868 3751887 AGTGTTATCTCCTGTAGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561662 ENSRNOG00000015297 ENSRNOT00000020516 1 1 1 90 9 15550642 15552392 AAGAAGTGAGAGGTGCCAG 59 15550570 15550588 TCCAGATCATAGTGCACGG 59 NA Rattus norvegicus 81 Ect2 ENSRNOG00000024365 ENSRNOT00000018055 1 1 1 80 2 112815751 112815770 CATTCCCTTTCTATCGGCTC 58 112814246 112815708 AGACTTCGGTGTTTCTCCA 59 NA Rattus norvegicus 81 Vamp2 ENSRNOG00000006989 ENSRNOT00000057295 3 1 1 61 10 55676201 55676220 TACCAGTAACAGGAGACTGC 59 55676244 55676769 TCATGATGTCCACCACCTC 59 NA DesignRelaxed Rattus norvegicus 81 LOC690045 ENSRNOG00000061895 ENSRNOT00000081946 1 1 4 80 4 163884672 163884691 GGATCGGATGTAAACAAGCA 58 163880783 163884632 GAAGGAACTTCAGTTCTTCCTC 59 NA Rattus norvegicus 81 LOC690045 ENSRNOG00000061895 ENSRNOT00000081946 2 1 4 80 4 163884673 163884692 TGGATCGGATGTAAACAAGC 58 163880784 163884632 AAGGAACTTCAGTTCTTCCTC 58 NA Rattus norvegicus 81 RGD1306484 ENSRNOG00000005821 ENSRNOT00000007630 2 1 1 60 10 37582996 37583015 GAACAAGTTCTGGGTGAAGG 59 37583037 37583056 GAATAAACTGCCACTGTCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ran ENSRNOG00000000938 ENSRNOT00000001247 1 1 1 80 12 31323156 31323260 TGAGAAGAAGTATGTAGCCAC 57 31323096 31323114 TTGAACTTGATGGGTCCTC 57 NA Rattus norvegicus 81 Eef1d ENSRNOG00000021638 ENSRNOT00000029456 2 1 1 80 7 116929291 116929309 AGTACGCAGAGAAGAAGGC 60 116928690 116929251 CATCATCCCAAGGTTTAACATCC 60 NA Rattus norvegicus 81 Mir429 ENSRNOG00000035595 ENSRNOT00000053718 2 1 1 60 5 173488376 173488398 CTTACCAGACATGGTTAGATCTG 59 173488338 173488356 ATGGACGGCATTACCAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Max ENSRNOG00000008049 ENSRNOT00000010954,ENSRNOT00000083286 1 2 3 80 6 100002767 100010500 GTTTCAATCTGCGGCTGAC 60 100002705 100002725 TGAAAGCTGTCTTTGATGTGG 59 NA Rattus norvegicus 81 Max ENSRNOG00000008049 ENSRNOT00000010954,ENSRNOT00000083286 3 2 3 108 6 100002767 100010500 GTTTCAATCTGCGGCTGAC 60 100002677 100002695 GAGTGATGGGACTGAGTCC 59 NA Rattus norvegicus 81 Mapk8ip2 ENSRNOG00000032828 ENSRNOT00000055792 2 1 1 80 7 130432345 130433591 CTGCGAGAAGGACAGTCTC 60 130433632 130433653 AACTCCTGGAAATCATCTTGGA 60 NA Rattus norvegicus 81 Bst1 ENSRNOG00000003064 ENSRNOT00000004094 3 1 1 88 14 71811388 71811406 TTGATTACCAGTCCTGCCC 59 71808197 71811338 TCTTGAATACTGCATGGATGC 59 NA Rattus norvegicus 81 Lmntd2 ENSRNOG00000017050 ENSRNOT00000022954 3 1 1 80 1 214200888 214200993 CTGTCAAGCAGCAGTTAGC 59 214200826 214200848 GGATCTCTAGTTCTCTTTGTTCC 58 NA Rattus norvegicus 81 Mir20a ENSRNOG00000035605 ENSRNOT00000053728 1 1 1 60 15 100180346 100180368 CACTAAAGTGCTTATAGTGCAGG 60 100180386 100180406 CTGTAAGTGCTCGTAATGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmprss4 ENSRNOG00000026650 ENSRNOT00000040313 3 1 1 80 8 49478012 49478032 GAACTTCAGATGCAGAATGGA 58 49474915 49476478 GCTCTTTCCACAGTCAAGG 59 NA Rattus norvegicus 81 Elavl4 ENSRNOG00000023601 ENSRNOT00000035252 3 1 1 80 5 130023887 130023906 TTGATCCAAAGGATGCAGAG 58 130010853 130023844 CGTACGACACCTTTATGGT 57 NA Rattus norvegicus 81 Tmem191c ENSRNOG00000001864 ENSRNOT00000002546 1 1 1 113 11 87977019 87977037 CATCCCGAGCTATTCGAGG 60 87976845 87976942 GATTGTGTTGCTCCAGGTC 59 NA Rattus norvegicus 81 Dhx58 ENSRNOG00000018247 ENSRNOT00000024718 1 1 1 80 10 88601072 88602479 CGACTTCTCGGTCTACTATACC 59 88601013 88601032 ATTCCTCCAGGTTTCCAGTC 60 NA Rattus norvegicus 81 RGD1559482 ENSRNOG00000048771 ENSRNOT00000074082 1 1 2 144 10 104953151 104953169 TCACAGTGACCTTGGAGAG 59 104953277 104955086 CTCCAAAGGCTTGAACCTG 59 NA Rattus norvegicus 81 Myo7b ENSRNOG00000015035 ENSRNOT00000021405,ENSRNOT00000090390 1 2 2 80 18 24749262 24749280 AACTGTGGCTCAATGTGAC 58 24748781 24749218 TGTACTTGGGTAGCTCCTG 58 NA Rattus norvegicus 81 Myo7b ENSRNOG00000015035 ENSRNOT00000021405,ENSRNOT00000090390 3 2 2 80 18 24759521 24760503 TTGAGAAGGAAGAGGACCTG 59 24759460 24759480 CAGCATTACTCTTCACTGTGG 59 NA Rattus norvegicus 81 Olr931 ENSRNOG00000047264 ENSRNOT00000044977 2 1 1 60 7 16405305 16405324 TGTCCTACAACTGTCTTGCT 59 16405345 16405365 AGCTAAGATGAAAGCAGTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nxpe1 ENSRNOG00000027730 ENSRNOT00000047264 1 1 2 72 8 52753764 52753785 GATGTTTCTTATCTCACTGCCA 59 52762416 52762436 CTGGTAACAGATATTGGTGGA 57 NA DesignNoJunction Rattus norvegicus 81 Stx3 ENSRNOG00000021013 ENSRNOT00000028535 2 1 1 80 1 228161405 228161423 AAGACGACCTTGAACAGCT 59 228160014 228161361 GCTTCTCCATGCTCTTCAG 58 NA Rattus norvegicus 81 Slc5a9 ENSRNOG00000042950 ENSRNOT00000064569,ENSRNOT00000080242 1 2 2 80 5 131851189 131851378 TGTACCCAGATGAAGTCGC 60 131851127 131851149 CAATATTGGAGCATCCAACTCTG 60 NA Rattus norvegicus 81 Slc5a9 ENSRNOG00000042950 ENSRNOT00000064569,ENSRNOT00000080242 2 2 2 80 5 131858200 131860421 CTGTGGGAATTTGGTCGTC 59 131858138 131858156 ACCAGGTCATGGATCTTCC 59 NA Rattus norvegicus 81 Ercc6 ENSRNOG00000030017 ENSRNOT00000088529,ENSRNOT00000064255 1 2 2 80 16 8793566 8793586 GCTGTTTACTCTGACTAGTCC 58 8793625 8793725 TGAATATTAGATCCGGTTCCTG 58 NA Rattus norvegicus 81 Shank2 ENSRNOG00000050206 ENSRNOT00000071484,ENSRNOT00000075078,ENSRNOT00000071741 2 3 3 81 1 217573373 217573391 CATAGAATCCAGGGTGGCA 59 217573435 217575110 GTACACGGAGTTCACATCAG 58 NA Rattus norvegicus 81 AABR07065593.2 ENSRNOG00000058841 ENSRNOT00000085594 1 1 1 60 6 136183879 136185540 GTGCTTGTGAAACTGAACAC 58 136183838 136183859 CTACTAATAGAAGGGTGTTGGT 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cgref1 ENSRNOG00000007923 ENSRNOT00000010586 3 1 1 80 6 26807637 26807655 ACGTCTGCGGGATTATCTC 59 26807699 26807998 TATAGCAGGACTTGCTCCC 59 NA Rattus norvegicus 81 Myh3 ENSRNOG00000046276 ENSRNOT00000004147 2 1 1 80 10 53644268 53644287 CTGAGATTGCAGGATCTGGT 60 53644329 53644486 TTGTTCATCAGCCTCCTCAG 60 NA Rattus norvegicus 81 LOC690460 ENSRNOG00000042797 ENSRNOT00000065418 3 1 1 60 20 11604818 11604837 CCAGTGACTTGAGCTATGAC 58 11604860 11604878 TCAGTGCAAGAGTCACAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bcl9 ENSRNOG00000017516 ENSRNOT00000023548 3 1 1 80 2 199343807 199344550 GATGGCAAATAAGGCTGCA 59 199343745 199343766 TTAGAGATGTTCTGGATGTGGA 59 NA Rattus norvegicus 81 LOC100361444 ENSRNOG00000011490 ENSRNOT00000015381 1 1 1 80 8 22857085 22857104 TACGGAGACTACAAGTGCAG 59 22857144 22858069 CGGCTCGATCCTTTAAATTCTC 60 NA Rattus norvegicus 81 Zbtb41 ENSRNOG00000011137 ENSRNOT00000015596 1 1 1 80 13 56521446 56522235 CACGTCAAGAGATTTCATCCT 58 56522274 56522295 ATCACATTTCCAACTCTCACTC 59 NA Rattus norvegicus 81 Hmgcs2 ENSRNOG00000019120 ENSRNOT00000026121 2 1 1 80 2 200476102 200477269 TTACCACAAGGTGAACTTCTC 58 200477311 200477329 TCATCCACTCGTTCAAGGT 59 NA Rattus norvegicus 81 Brd8 ENSRNOG00000020340 ENSRNOT00000087968,ENSRNOT00000048752 1 2 2 80 18 27406111 27406397 CATCATTGAGGACAAGGTGG 59 27406050 27406069 TCTTCACAGAACGACAATGC 59 NA Rattus norvegicus 81 MGC114499 ENSRNOG00000027112 ENSRNOT00000027745 2 1 1 63 1 97714764 97714782 GACTATGCTGACAGTGCTG 58 97714809 97716737 CACTGGACAGGAGAGTGTG 60 NA DesignNoJunction Rattus norvegicus 81 MGC114499 ENSRNOG00000027112 ENSRNOT00000027745 3 1 1 64 1 97714763 97714781 CGACTATGCTGACAGTGCT 60 97714809 97716737 CACTGGACAGGAGAGTGTG 60 NA DesignNoJunction Rattus norvegicus 81 Piwil1 ENSRNOG00000000934 ENSRNOT00000001238 1 1 1 80 12 31621767 31621786 GACCAGAATCCAAAGAGCAC 59 31620473 31621729 GTTGTATTGCTTCCTGTAGTACTC 59 NA Rattus norvegicus 81 Usp28 ENSRNOG00000007325 ENSRNOT00000009724,ENSRNOT00000067420 3 2 2 80 8 53350269 53350290 ACTATAGTCTGTTCCGAAAGGT 59 53350330 53350840 AAGCTTCCTGGTACTTTCCT 59 NA Rattus norvegicus 81 Decr2 ENSRNOG00000050424 ENSRNOT00000077826,ENSRNOT00000027593 1 2 3 91 10 15463701 15463876 ATGAAGATGTTGCAGGCAC 59 15463628 15463646 ATGTAGCTGATGAGGGCTG 59 NA Rattus norvegicus 81 Zcchc8 ENSRNOG00000001243 ENSRNOT00000001668 1 1 1 80 12 38318401 38319308 AAGCCAGGAGTTATTAGTGAG 57 38319350 38319368 CATCCGGTAGATGAAAGGG 57 NA Rattus norvegicus 81 Fbxl13 ENSRNOG00000043035 ENSRNOT00000065039 1 1 1 80 4 10124333 10128939 CGTCTTTCACAGATGAATCCA 59 10128978 10128999 TGGTTGTGTTGGATAGATTGAG 59 NA Rattus norvegicus 81 Akr1b8 ENSRNOG00000009734 ENSRNOT00000078996,ENSRNOT00000074951 2 2 3 91 4 61825562 61825583 TCTGATCCGGTTCCATATAGAG 59 61825632 61826191 AGTCAAAGACCTGAATGTTCTC 58 NA Rattus norvegicus 81 AABR07024637.1 ENSRNOG00000029131 ENSRNOT00000048001 3 1 1 80 16 9772976 9772995 TGTCTGAGGAGGAAATCTGG 59 9773034 9774701 AGTCTGAGGAATCATTACGTAGG 60 NA Rattus norvegicus 81 Trappc10 ENSRNOG00000023210 ENSRNOT00000032240 3 1 1 80 20 11201148 11204311 AGCTCTTAGAAGTCTCTGTCC 59 11204352 11204371 CTATCCTCTGCAAGACCTCC 59 NA Rattus norvegicus 81 Nup205 ENSRNOG00000010852 ENSRNOT00000014832 3 1 1 80 4 62762669 62762689 CAAGAAGATAATGTGGAGGGA 57 62762730 62762923 TACATTGGCACAAATCTGCT 58 NA Rattus norvegicus 81 Pwp2 ENSRNOG00000001210 ENSRNOT00000001605 1 1 1 80 20 11232386 11232406 TCTACTATGCACTGAGTGGAC 59 11232447 11232697 TGAGCGAGTACAGATCTAGG 58 NA Rattus norvegicus 81 Rrp36 ENSRNOG00000017836 ENSRNOT00000024010 3 1 1 80 9 16624467 16625484 CCTGAAGAAATCTGAGCAGC 59 16625526 16625545 AAACTCTCCAGCTTCTTGCT 60 NA Rattus norvegicus 81 Slc35f3 ENSRNOG00000049456 ENSRNOT00000071655 3 1 1 80 19 59259241 59259259 GGCTTCCACAGTCATTCAG 59 59259302 59261370 GAACAGAACCTTGTAGAGGG 58 NA Rattus norvegicus 81 Mir3582 ENSRNOG00000035651 ENSRNOT00000053774 3 1 1 60 18 2052474 2052494 GCAATCAATGCATAGCTACAG 58 2052515 2052534 CCAAATCGCCTCTTCAATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc94 ENSRNOG00000029606 ENSRNOT00000050775 3 1 1 167 16 22852229 22852247 CAAAGAAGGCAAAGACGGA 58 22851467 22852098 TAGACCTGTCACTGTCCTC 58 NA DesignNoJunction Rattus norvegicus 81 Trim34 ENSRNOG00000042686 ENSRNOT00000055210 2 1 1 80 1 169437469 169437487 GTTTGTGAGCGTTCTCAGG 59 169437529 169438070 GAGATTCTCCTGACATTCCCT 59 NA Rattus norvegicus 81 Olr1077 ENSRNOG00000054107 ENSRNOT00000083574 3 1 1 60 7 13461008 13461027 TGTCATCCACTGCATTACAC 58 13460967 13460988 TAAGAACCAGAAATCCACAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dll3 ENSRNOG00000019338 ENSRNOT00000026182 3 1 2 169 1 85489177 85489196 GAGTTGCACTTCTCATACCG 59 85489327 85489478 CGACATACGGTTAGGGACTC 60 NA Rattus norvegicus 81 Rnf34 ENSRNOG00000001331 ENSRNOT00000001799 1 1 1 81 12 39167766 39167988 AAACTTAGAGGAACAGAACCC 58 39167705 39167723 CACCTCTTCAAGGCTTGAC 59 NA Rattus norvegicus 81 Slfn5 ENSRNOG00000021719 ENSRNOT00000035730 2 1 1 63 10 70303560 70303578 CAGTGTTATGAAGCCGCTG 59 70303605 70304886 CTCTGGGTTGGTTTCTGTC 58 NA DesignNoJunction Rattus norvegicus 81 Krtap11-1 ENSRNOG00000027478 ENSRNOT00000029345 1 1 1 60 11 29710372 29710391 AGTGGGAGGCATTTCTACTG 60 29710331 29710349 TTGCTGGTATGTCCTGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ly6g6c ENSRNOG00000000843 ENSRNOT00000001119 2 1 1 80 20 5059369 5059729 TGTACCTTGGGAAGATGTGG 60 5059771 5059790 TTTCATTGAAGACCTCCCGA 59 NA Rattus norvegicus 81 Ccdc39 ENSRNOG00000011440 ENSRNOT00000065469,ENSRNOT00000084521 2 2 2 80 2 120282562 120282581 AACACCTTGCAAGTTCTGAG 59 120282131 120282519 GTACTCATCACTTGACGGC 58 NA Rattus norvegicus 81 Atpaf1 ENSRNOG00000010169 ENSRNOT00000087197,ENSRNOT00000013533 1 2 2 80 5 134651676 134651696 CACTGTCTACGCAGTTATTCC 59 134652943 134654092 GCACAAAGAAATGTTGGGC 59 NA Rattus norvegicus 81 Gas2l2 ENSRNOG00000047546 ENSRNOT00000071218 3 1 1 80 10 70643028 70644033 CTCATCTTCATCCGGATCCTC 60 70642968 70642987 ATCCAGATAATGACCCAGCG 60 NA Rattus norvegicus 81 Evi5 ENSRNOG00000002039 ENSRNOT00000061630 1 1 1 80 14 2950589 2950607 TCGTGAACTGTTTAAGCCA 57 2950648 2952566 GGAAGATACTCCTGTATCATGC 58 NA Rattus norvegicus 81 Reep5 ENSRNOG00000020167 ENSRNOT00000027345 1 1 1 80 18 27158705 27158723 ATCTGGTGTTCGGTTATGG 57 27141129 27158663 TGGCTTTCATTGAGATGTAGG 58 NA Rattus norvegicus 81 Gemin7 ENSRNOG00000049772 ENSRNOT00000074418 1 1 1 143 1 80481898 80483367 TACTCTCGGAGCTTTCCAG 59 80481773 80481793 GGAATGCATCTGAAGCTAGAC 59 NA InUTR Rattus norvegicus 81 Reln ENSRNOG00000021441 ENSRNOT00000010521,ENSRNOT00000061858 2 2 2 80 4 9471610 9471628 CACCTGCCTACAACAAACC 59 9471670 9525407 TGCAGTAGCCATGAAATTCAC 59 NA Rattus norvegicus 81 AABR07052692.1 ENSRNOG00000047487 ENSRNOT00000074765 1 1 1 80 3 69637211 69637268 CATTGGTGCTTGGAGACAG 59 69637149 69637169 GGATAAAGATGGCTTCCTGAC 59 NA Rattus norvegicus 81 Nr5a2 ENSRNOG00000000653 ENSRNOT00000000812 2 1 1 80 13 53799946 53850872 GAACTGAAGGTTGATGACCA 58 53799885 53799903 TTGCCGGTAAATGTGATCC 58 NA Rattus norvegicus 81 Prp2 ENSRNOG00000005379 ENSRNOT00000007124 1 1 1 81 4 166076240 166077922 GGAACCAGAACTTCAGAACC 59 166077966 166077984 ATTACCAGGTGGTCTTGGT 58 NA Rattus norvegicus 81 Egln2 ENSRNOG00000020947 ENSRNOT00000028434 1 1 1 87 1 83971095 83971113 GAGGCATGTTGACAATCCC 59 83970667 83971044 GCCATGCACCTTAACATCC 59 NA Rattus norvegicus 81 Large ENSRNOG00000013742 ENSRNOT00000090886,ENSRNOT00000064105 2 2 2 80 19 12575922 12575944 GACTGGTATCTTGGAAATCTCTG 59 12555797 12575887 TAGTATGACTCCTGTGTTATAGCC 59 NA Rattus norvegicus 81 Llph ENSRNOG00000004316 ENSRNOT00000005794 2 1 1 114 7 65005966 65005984 AAATGCAGTGTGATGTCGC 60 65008714 65008732 ATCCATACTGGGTACTGGC 59 NA DesignNoJunction Rattus norvegicus 81 Adm ENSRNOG00000027030 ENSRNOT00000036718 1 1 1 85 1 175445714 175445732 ATGTTATTGGGTTCGCTCG 58 175445778 175445957 CACTTATTCCACTTCTTTCGGA 59 NA Rattus norvegicus 81 Mapk1 ENSRNOG00000001849 ENSRNOT00000002533 1 1 1 80 11 88231791 88236620 ATCTCAAGATCTGTGACTTTGG 58 88231732 88231753 CTACATACTCTGTCAAGAACCC 58 NA Rattus norvegicus 81 Piwil4 ENSRNOG00000009043 ENSRNOT00000049724,ENSRNOT00000078117 2 2 2 80 8 13224682 13224700 GAAGAAACTCGGCTCAGTC 58 13222116 13224639 AGTCACTTGGTTTCTCTGGA 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000079628 1 1 18 85 1 43508754 43697823 CGAACTAACCACCAGACCT 59 43697872 43697890 CACAATGGAAGTGCTCCAC 59 NA InUTR Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000089428 1 1 18 80 1 43508704 43508723 GAGTCCGTCAGAACACTAGG 60 43508766 43516735 CTACTGACTGAGGCTCCTG 59 NA Rattus norvegicus 81 Trappc6b ENSRNOG00000004103 ENSRNOT00000005568 2 1 1 81 6 80147647 80147668 CTTCAGGACAACAAATTTCGAC 59 80143556 80147606 ACGCTAGATACTTGGATGCA 59 NA Rattus norvegicus 81 Ttc9c ENSRNOG00000019464 ENSRNOT00000026376 2 1 1 80 1 225006354 225010555 AATAGGCAACCTAAAGACGC 58 225006293 225006312 CTCTTTCCTATGGTAGCTGC 58 NA Rattus norvegicus 81 Timm10 ENSRNOG00000007883 ENSRNOT00000010619 1 1 1 109 3 72227241 72229676 TACAACAGAATGACCAGTGC 58 72229748 72229766 TACTTGGATACGCATCGGT 59 NA Rattus norvegicus 81 Mad2l1bp ENSRNOG00000019463 ENSRNOT00000026331 1 1 1 89 9 17217127 17217145 CTACTAAGCTGGCAGTCAC 58 17217197 17217596 CAGTCCAATCCAAATTTGGG 57 NA InUTR Rattus norvegicus 81 LOC100362333 ENSRNOG00000004843 ENSRNOT00000006416 3 1 1 60 7 118816439 118816458 CAGTGATGTACTGTCAGCCA 60 118816398 118816417 TTTCAATGGCGTTACGAACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klf10 ENSRNOG00000006118 ENSRNOT00000008350,ENSRNOT00000085626 3 2 2 80 7 77159287 77159307 CCAGTGTCTGATACCTCAGAG 59 77159134 77159246 AGTCAAACAGAATGCTGGGA 60 NA Rattus norvegicus 81 Cdo1 ENSRNOG00000000158 ENSRNOT00000000172 3 1 1 80 18 40712101 40712121 CTTGTGGATCAAGGAAATGGG 59 40709487 40712060 GTGATCGTGAATACTGCTGC 60 NA Rattus norvegicus 81 Alkbh6 ENSRNOG00000047943 ENSRNOT00000080613,ENSRNOT00000071180 3 2 2 64 1 90961116 90961138 CTCTAATCTACTATGTCCCTGAC 57 90959612 90961094 AACCTGTCGAAGCAAATACTC 59 NA DesignNoJunction Rattus norvegicus 81 Gtpbp2 ENSRNOG00000019332 ENSRNOT00000026195,ENSRNOT00000083764 1 2 2 80 9 17203135 17203155 CATGAGATTCAGTCTGGACGA 60 17202787 17203094 GTAATTCACCACCTCTCCCT 59 NA Rattus norvegicus 81 Gtpbp2 ENSRNOG00000019332 ENSRNOT00000026195,ENSRNOT00000083764 3 2 2 80 9 17203135 17203153 TGAGATTCAGTCTGGACGA 58 17202785 17203092 CTGTAATTCACCACCTCTCC 58 NA Rattus norvegicus 81 AABR07062211.1 ENSRNOG00000061664 ENSRNOT00000087219 1 1 1 80 4 165117997 165118016 CTTCAGGGTTACAGAACCAG 58 165115447 165117957 GTAGATTAGAGTTTCCTCTGGG 58 NA Rattus norvegicus 81 St3gal1 ENSRNOG00000008209 ENSRNOT00000010980 1 1 1 80 7 107898921 107900303 GTGATGAGGTGGACTTATATGG 58 107898862 107898880 CTGCTGATGGGTTGTTCTC 59 NA Rattus norvegicus 81 Sulf1 ENSRNOG00000009037 ENSRNOT00000072411,ENSRNOT00000012610 3 2 2 80 5 6020357 6020377 AGAATTTAAGGGAAGTGAGGG 57 6019872 6020318 TGTTGTAATAGCTCTGCTTACC 58 NA Rattus norvegicus 81 Nlgn2 ENSRNOG00000015430 ENSRNOT00000056872 3 1 1 82 10 56435498 56435517 ATCACCATCTTTGGGTCTGG 60 56435326 56435453 TTCTGGAACAGCCCTTCTG 60 NA Rattus norvegicus 81 Mpzl2 ENSRNOG00000016085 ENSRNOT00000021693 3 1 1 114 8 49347024 49347043 AAGGGCGGATAAATCTGAGG 60 49349441 49350891 AATCCTCAGCTTCCCACAG 59 NA InUTR Rattus norvegicus 81 Chchd6 ENSRNOG00000060248 ENSRNOT00000088753 2 1 1 80 4 121545155 121545174 GTGCTTACTGTTCCTTCACC 59 121541581 121545114 GGACACTTTAAAGTCTCCCTG 58 NA Rattus norvegicus 81 Snx16 ENSRNOG00000009953 ENSRNOT00000050987,ENSRNOT00000083909 2 2 2 80 2 93537550 93538049 ACCAGAATCAGAACATTGTCCT 60 93538089 93538108 CACCCTTAGGATCTGTCCAC 60 NA Rattus norvegicus 81 AABR07065815.1 ENSRNOG00000050143 ENSRNOT00000048908 2 1 2 105 6 142635626 142635725 AGCTACATGTGTCCACTCC 59 142635539 142635557 GAATGTGTAGCCAGAAGCC 59 NA Rattus norvegicus 81 Olr1425 ENSRNOG00000049799 ENSRNOT00000047974 3 1 1 60 10 44174490 44174508 TTCTTCTGTGAGGTCCGTG 59 44174448 44174466 TCTCATACAGCCAGGTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dyrk1b ENSRNOG00000019254 ENSRNOT00000087157,ENSRNOT00000026107 1 2 2 80 1 85116537 85117787 ACTACATAGTACACCTGAAGCG 60 85117828 85117846 ACAGGTTGTAGGACAGCAG 59 NA Rattus norvegicus 81 Lypd6 ENSRNOG00000038980 ENSRNOT00000059588 1 1 1 80 3 35680068 35686924 CCATCCTTCAACCACTCCA 59 35686965 35686986 CGGTTGCATTCATAATTGTCTG 59 NA Rattus norvegicus 81 Mak ENSRNOG00000015101 ENSRNOT00000020672 1 1 1 80 17 21563959 21563979 CAAGAAAGAAGTGGGATCAGC 59 21564021 21567336 GTGCTCCAGGTATAGTCGG 59 NA Rattus norvegicus 81 Rbm25l1 ENSRNOG00000002871 ENSRNOT00000003832 3 1 1 60 10 10457677 10457696 CAACTGTCCTAGTGCCTACC 60 10457719 10457737 TGATCCTTTCTTGCTCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Susd3 ENSRNOG00000016525 ENSRNOT00000032997 3 1 1 62 17 15821753 15821771 TGACTGGTCTTCAGGAAGC 59 15823036 15823054 TTGAAGCCAAAGGTCTCGT 60 NA DesignNoJunction Rattus norvegicus 81 Prdm14 ENSRNOG00000021792 ENSRNOT00000034525 1 1 1 81 5 5715492 5718130 CCTACCTGTGTTCAACGTG 59 5718175 5718193 CTGTCTCCAGAGTGGACTC 59 NA Rattus norvegicus 81 Rilpl2 ENSRNOG00000001061 ENSRNOT00000001403 2 1 1 99 12 37552583 37552603 AAACTCCAGGAGGAAGAAGAG 59 37552664 37556014 GACCGGAAAGAGAACAGCT 60 NA Rattus norvegicus 81 LOC102553002 ENSRNOG00000031459 ENSRNOT00000006118 2 1 1 86 1 65701530 65701548 TGCAGTTATCTCCCAGCTG 60 65694794 65701480 AGAATCCAACCTGGATGGC 60 NA Rattus norvegicus 81 Zfp653 ENSRNOG00000014065 ENSRNOT00000018874 2 1 1 80 8 23068570 23068588 TGGAGATGTTCCACTGTCC 59 23067725 23068526 CAAGGTTGACGTGGTTCTG 59 NA Rattus norvegicus 81 Rn60_1_0436.2 ENSRNOG00000060991 ENSRNOT00000078186 3 1 1 60 1 43532992 43533011 CAGAGTCCTTTGCTTTGACC 59 43532951 43532972 GGTTACAATTGCTTGACTTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scube2 ENSRNOG00000013123 ENSRNOT00000052377,ENSRNOT00000086349 1 2 2 80 1 174430159 174434037 CATACGATGAAGACTACCAGGA 59 174430100 174430119 TTTCCTGGTGGTTCTCAGAC 60 NA Rattus norvegicus 81 Bmp6 ENSRNOG00000013717 ENSRNOT00000018359 3 1 1 80 17 26955285 26955390 GTACAGACCTTGGTCCACC 60 26955223 26955242 CGAGATGGCATTCAGTTTGG 60 NA Rattus norvegicus 81 Cphx ENSRNOG00000025433 ENSRNOT00000035065 2 1 1 80 16 3790785 3790806 CTTATCCAGATTTCACGACCAG 59 3788298 3790747 TCTGAAACCAGTTATCGATCAC 58 NA Rattus norvegicus 81 Afg3l2 ENSRNOG00000017965 ENSRNOT00000024632 2 1 1 80 18 63181387 63185231 CCTCCGTACGCTTTATCAG 58 63181325 63181344 TAAGCAGCAATTACATCCCT 57 NA Rattus norvegicus 81 Myrfl ENSRNOG00000021833 ENSRNOT00000068774 3 1 1 80 7 59841518 59841538 TGTACAGTACGACTACAAACC 58 59840642 59841476 TCTTGGGCAATCATTCCTG 58 NA Rattus norvegicus 81 Rnf182 ENSRNOG00000018070 ENSRNOT00000024323 2 1 1 142 17 24242724 24289906 CTGGTCAGATCCTTCAGCT 59 24290011 24290030 ATCACATCATCCGAGTCAGG 59 NA InUTR Rattus norvegicus 81 Acad10 ENSRNOG00000037815 ENSRNOT00000073125,ENSRNOT00000057435 2 2 2 81 12 40435420 40435438 GGTTCTGAGGAAGAAACCG 58 40435483 40438266 AAGGGCTTTCATGATCCTG 58 NA Rattus norvegicus 81 Nprl2 ENSRNOG00000021660 ENSRNOT00000051522 1 1 1 80 8 116300341 116300575 CATGTTGATGAAAGGAAGCTG 58 116300615 116300635 CACTCGGACTGGATATTTCTG 58 NA Rattus norvegicus 81 Fbxo41 ENSRNOG00000033202 ENSRNOT00000043201,ENSRNOT00000084049 3 2 2 84 4 117261661 117261809 GCTGTCACCTACAGGAGTG 60 117261595 117261613 GGGAGACAATGTCTCTGCA 59 NA Rattus norvegicus 81 Rn60_1_0777.1 ENSRNOG00000031005 ENSRNOT00000046600 1 1 1 80 1 76345679 76345700 GCAATAACATTGTTGCCAACTC 60 76338600 76345643 GGTATCCTTACCATTCATTCTCAG 59 NA Rattus norvegicus 81 Osbpl8 ENSRNOG00000026962 ENSRNOT00000091910 1 1 2 136 7 54012508 54012526 AGTGAAACATCGCACTCCA 60 54022612 54024193 CAGATTGAGCTTCACTTCCAG 59 NA Rattus norvegicus 81 Nsun7 ENSRNOG00000025494 ENSRNOT00000039835 3 1 1 87 14 43559142 43559162 CCAGAGACAGTTAGGAAACAG 58 43558741 43559096 CTTCTTCAAGGCTTACTTTACC 57 NA Rattus norvegicus 81 Olr1251 ENSRNOG00000046136 ENSRNOT00000071452 2 1 1 60 4 1671797 1671817 TACTTCTGTGATCTCCTCCCT 60 1671836 1671857 TCTCATTGACATAGATGCTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smg9 ENSRNOG00000019596 ENSRNOT00000026669 1 1 1 81 1 81276860 81276878 CCTTCCTCTTCACGGTCTG 60 81276922 81280340 GTTTGCAGGAACCTGTACAG 59 NA Rattus norvegicus 81 LOC681356 ENSRNOG00000050666 ENSRNOT00000041763 2 1 1 60 18 40088021 40088040 AAGCTCAATAAAGCCGTCTG 59 40088063 40088081 GTACTCGGATTCGGTAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tgfa ENSRNOG00000016182 ENSRNOT00000057441 3 1 1 151 4 118040385 118040404 GGCTGTCCTCATTATCACCT 59 118041817 118042326 TTCAGACCACTGTCTCAGAG 59 NA Rattus norvegicus 81 Luc7l ENSRNOG00000020488 ENSRNOT00000060078 1 1 1 80 10 15555424 15561808 AGAAGCAGAGGAAGAATACAG 57 15561850 15561868 GAACAAACCTCGCAAACAC 58 NA Rattus norvegicus 81 Pvalb ENSRNOG00000006471 ENSRNOT00000067635 3 1 1 81 7 119439986 119441422 CTTTACTGCTGCAGACTCC 58 119439923 119439941 CTTCACATCATCCGCACTC 59 NA Rattus norvegicus 81 LOC100912136 ENSRNOG00000045971 ENSRNOT00000071683 1 1 1 60 8 41253298 41253319 TACATTCTTGGTTTCCATGCTG 59 41253338 41253358 CTTGACATCCTTGTTCCTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_8_0909.1 ENSRNOG00000042208 ENSRNOT00000064498 1 1 1 60 8 91296658 91296678 CAGGTTTGTTAGCAGATGCTC 60 91296618 91296636 AAGTTGGACGCTTCTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem70 ENSRNOG00000006608 ENSRNOT00000008680 3 1 1 92 5 2034287 2034306 TGTCTGCCTCTTACATACAC 57 2021184 2034235 CATTTCACACCAAATACTGTCC 58 NA Rattus norvegicus 81 Rnf144b ENSRNOG00000016123 ENSRNOT00000082733,ENSRNOT00000036876 3 2 2 80 17 17828342 17836683 TAAAGTTTGAACGAGAGGTCC 58 17828282 17828300 TGATATGGCACACTGTCTG 57 NA Rattus norvegicus 81 Trim45 ENSRNOG00000015347 ENSRNOT00000043146 2 1 1 85 2 203304810 203304831 CCAAGGCTATGAAGTATATGGG 58 203304874 203306460 CTCTATGGAGATCTTCTCCCTG 59 NA Rattus norvegicus 81 Slc38a5 ENSRNOG00000027767 ENSRNOT00000079664,ENSRNOT00000038068 1 2 2 80 X 14965038 14965151 GGATATCTTTGGGTTTATTGGCTC 60 14964981 14965000 ACAATGCGGAGGTAGAAGAC 60 NA Rattus norvegicus 81 Ovch2 ENSRNOG00000019794 ENSRNOT00000026807 3 1 1 80 1 172021921 172021940 GGATCTCCTGGGATCTTCAC 59 172020665 172021878 CTTTCTTCGATGGCCAGTC 59 NA Rattus norvegicus 81 Mtpn ENSRNOG00000011857 ENSRNOT00000015808 3 1 1 80 4 63012927 63022338 CTTCTGTCAAAGGGTGCTG 59 63012865 63012883 GATTGCCTGGTTGTCAGTG 59 NA Rattus norvegicus 81 AABR07065699.1 ENSRNOG00000050102 ENSRNOT00000072633 3 1 1 74 6 139560046 139560172 AAAGGTGTCCAGTGTGAGG 60 139560209 139560228 GAGTTTCATGGACCTTCCAG 58 NA DesignNoJunction Rattus norvegicus 81 Olr1349 ENSRNOG00000016546 ENSRNOT00000022152 2 1 1 60 9 99745811 99745829 TGCTCTTTGCTGTCTTCCT 59 99745853 99745871 ATCATAGTGAGGTTGCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1311703 ENSRNOG00000053659 ENSRNOT00000090773 1 1 1 80 1 185559970 185559988 GAGCATGGACAGCAAACTG 60 185559018 185559930 TCTCCATCATGATCTTCTACCTC 59 NA Rattus norvegicus 81 Olr1547 ENSRNOG00000049012 ENSRNOT00000039939 3 1 1 60 11 43465458 43465478 TGGTCATCTATCTCATCACCA 58 43465496 43465518 TCATTCCAGATGAGAGTGATCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910835 ENSRNOG00000048343 ENSRNOT00000075524 1 1 1 80 8 122417671 122420915 ACTTCAAGGCCAATGACCT 59 122417609 122417627 TCATCATCTCGTCCTCAGG 58 NA Rattus norvegicus 81 Glul ENSRNOG00000049560 ENSRNOT00000075480 1 1 1 81 13 71333973 71335305 TGTAGAAGAGTTACCCGAGTG 59 71335348 71335366 ATGGAGGTACATGTCGCTG 60 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000085241 3 1 6 82 9 17341352 17341371 ACCATGAACTTTCTGCTCTC 58 17341416 17353786 TTGGCTTGTCACATCTTGG 58 NA InUTR Rattus norvegicus 81 Kcnj3 ENSRNOG00000005369 ENSRNOT00000007335 2 1 1 93 3 41029702 41029720 TTATGACCTATCCCAGCGA 58 41029777 41180234 TTGACAAGTCATCCCTGTG 57 NA Rattus norvegicus 81 Cog2 ENSRNOG00000018228 ENSRNOT00000058074 3 1 1 80 19 57301779 57301798 ACAAACTCCTGGAATTCGTC 58 57301841 57303814 TGCCTTTCTCACTTGACAC 58 NA Rattus norvegicus 81 Hapln1 ENSRNOG00000032002 ENSRNOT00000042958,ENSRNOT00000043196 2 2 2 81 2 18412046 18415167 ATCCAACTTCAATGGCCGA 60 18415211 18415230 ATTGAGACAAGCTTGCACTG 59 NA Rattus norvegicus 81 LOC689412 ENSRNOG00000027254 ENSRNOT00000035431 3 1 1 80 13 65551151 65551216 TTGGTTATCTGGTGTTGATAGC 59 65551256 65551275 CATAACCTCTGTCCTCTGGG 59 NA InUTR Rattus norvegicus 81 Psmb7 ENSRNOG00000011732 ENSRNOT00000083850,ENSRNOT00000085981,ENSRNOT00000016876 3 3 3 91 3 22918931 22938765 TTATGTCACCATGGGTTCTG 58 22892718 22892736 GCTTCTTGGCTTCTTCCTC 59 NA Rattus norvegicus 81 Olr889 ENSRNOG00000033344 ENSRNOT00000047673 3 1 1 60 7 4182771 4182791 GGTTTCCATCATGTATGGCAG 60 4182731 4182749 CTGTTCTTTGGCAGAAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tex38 ENSRNOG00000010162 ENSRNOT00000013480 2 1 1 82 5 134637528 134637927 TCTCTGGCATGTGGATCTC 59 134637464 134637483 GTGCAGAAAGATTATGCAGC 58 NA Rattus norvegicus 81 Ndufb5 ENSRNOG00000011949 ENSRNOT00000016051 3 1 1 80 2 119150710 119153222 GCCGACTTACGGTTAAAGG 59 119153262 119153284 GGTTGGATATTGATACCAAGGTC 59 NA Rattus norvegicus 81 Nfu1 ENSRNOG00000018410 ENSRNOT00000024884 2 1 1 81 4 118820129 118820147 GTTCTTGAGACGAGGACCA 59 118820190 118823688 CAATCCTGAATAACTGCCTGG 59 NA Rattus norvegicus 81 E2f5 ENSRNOG00000010760 ENSRNOT00000044847 2 1 1 80 2 88353604 88354494 GTACCTATTCCAGAAATGGGAC 58 88353545 88353563 CACATGGATTGGTCCTGAG 58 NA Rattus norvegicus 81 AC106292.2 ENSRNOG00000059017 ENSRNOT00000085226 2 1 1 60 11 65744159 65744178 ATTCCTGCAAATAGACAGCC 58 65744201 65744219 CAGACGCTGAGATACTGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr877 ENSRNOG00000043299 ENSRNOT00000066301 2 1 1 60 7 3450798 3450818 ACCCATGTACTTCTTCCTCAG 59 3450758 3450776 AAACGTGGATGTGAAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307595 ENSRNOG00000011239 ENSRNOT00000014928 3 1 1 100 2 138194453 138194471 CATGCTTCTCAGTCAGCAG 59 138194535 138197270 CGATCAGAAATGTTCCCGG 59 NA InUTR Rattus norvegicus 81 Rgs13 ENSRNOG00000003888 ENSRNOT00000005163 2 1 1 92 13 60994709 60997671 TCCCTTCAAACCTTACTTTGGA 60 60973443 60973461 CTGTGTACACTACTGGGCC 60 NA Rattus norvegicus 81 Rpl3 ENSRNOG00000016896 ENSRNOT00000067032,ENSRNOT00000089407 2 2 2 95 7 121299762 121300067 AATTGCTCACACTCAGATGC 59 121299686 121299704 AGCTTCTCAGCTACAGTGC 60 NA Rattus norvegicus 81 AABR07065814.6 ENSRNOG00000060468 ENSRNOT00000071555 3 1 1 60 6 142385681 142385701 TATTCCATGAATTGGGTTCGC 59 142385641 142385660 TTATGTGAGCAACCCATTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp329 ENSRNOG00000019376 ENSRNOT00000026204 2 1 1 88 1 65781553 65791835 GCAACCTGTATATGGAACATGAG 60 65791880 65791901 CCTTCCATTTCTACCTCAAAGG 59 NA InUTR Rattus norvegicus 81 Tsc22d2 ENSRNOG00000038044 ENSRNOT00000015119 3 1 2 91 2 148621020 148621039 TTCAGGAATCAAAGAGCCTC 58 148652074 148652721 TTTCACCAGATCCATTGCT 57 NA Rattus norvegicus 81 Tsc22d2 ENSRNOG00000038044 ENSRNOT00000088139,ENSRNOT00000015119 2 2 2 94 2 148609947 148609967 TAGCTATTCCTGTTGATGGTG 58 148652074 148652721 TTTCACCAGATCCATTGCT 57 NA Rattus norvegicus 81 Rps15al2 ENSRNOG00000032877 ENSRNOT00000046642 3 1 1 60 11 84094695 84094714 GGAAGATCGTTGTGAACCTC 59 84094734 84094755 AATCTAGGGCTTATAACTCCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sod2 ENSRNOG00000019048 ENSRNOT00000025794 2 1 1 80 1 47916819 47916838 GCTTCAATAAGGAGCAAGGT 58 47916207 47916776 GAATAAGGCCTGTGGTTCC 58 NA Rattus norvegicus 81 Cdk4 ENSRNOG00000025602 ENSRNOT00000031796 3 1 1 80 7 70350071 70350220 ATGTTGTACGGCTGATGGA 59 70350258 70350282 CTATATGCTCAAACACTAAGGTGAC 60 NA Rattus norvegicus 81 Fam110d ENSRNOG00000016491 ENSRNOT00000022130 1 1 1 145 5 152473807 152473825 CTGAAACTCAGCGTCTCCA 60 152471928 152471946 GATGGTGTAGTGGGTGAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07068417.1 ENSRNOG00000025797 ENSRNOT00000034533 1 1 1 80 9 104478427 104478930 GCACAATATGAACATCATCCCT 59 104478368 104478386 AGCTTCCTGTTCAGCTCTG 60 NA Rattus norvegicus 81 Gas7 ENSRNOG00000049361 ENSRNOT00000078820,ENSRNOT00000072855,ENSRNOT00000074718 2 3 3 80 10 54229073 54229093 GATCAAGTTGAGCAACAAGAC 58 54229135 54233078 CGCATGAGATCATCTCCTG 58 NA Rattus norvegicus 81 Thsd7a ENSRNOG00000030151 ENSRNOT00000052063 2 1 1 80 4 38696851 38696872 GAGAATGTAAACTACCATGCCC 59 38693375 38696811 GATTGCAAGGCAAAGAACAC 59 NA Rattus norvegicus 81 Rbm11 ENSRNOG00000029147 ENSRNOT00000047240 3 1 1 80 11 14011011 14011030 TTCTCGCTCTTCTGAACCAG 60 14011071 14011611 ATTTCATCGTTCCTGAAGCTG 59 NA Rattus norvegicus 81 Nts ENSRNOG00000004179 ENSRNOT00000005706 1 1 1 80 7 44115277 44118722 CATCGAAGGTCAGCAAAGG 59 44115215 44115235 TGTTCAGGTTATTGATCAGGC 58 NA Rattus norvegicus 81 Nts ENSRNOG00000004179 ENSRNOT00000005706 2 1 1 80 7 44115277 44118722 CATCGAAGGTCAGCAAAGG 59 44115215 44115236 TGTTCAGGTTATTGATCAGGCT 60 NA Rattus norvegicus 81 Krtap3-3 ENSRNOG00000045678 ENSRNOT00000039983 3 1 1 195 10 87468578 87468596 CCTCTGACAAGTCCTGTCG 60 87468401 87468420 ACATAGGTGGTGAGGTTGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krtap1-5 ENSRNOG00000054186 ENSRNOT00000084798 2 1 1 75 10 87500754 87500772 AGACAGGCTATGGCATTGG 60 87500697 87500715 CTAACACGGTAGTTCACGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025074.1 ENSRNOG00000032550 ENSRNOT00000046984 2 1 1 69 16 27472242 27472260 CCTCTGAGGAGAAGATCGC 59 27472175 27472210 TCTTTAGCTCTGTAGGCAGC 60 NA DesignNoJunction Rattus norvegicus 81 Crygc ENSRNOG00000014950 ENSRNOT00000020078 3 1 1 81 9 71787959 71787977 CTACCCTGACTACCAGCAG 59 71786572 71787914 CCTGTGGGAACCTGTATGG 60 NA Rattus norvegicus 81 Gnao1 ENSRNOG00000019482 ENSRNOT00000026373 1 1 1 80 19 11582681 11668526 TGAAGCAGATGAAGATCATCCA 60 11582622 11582640 TGTTGCTGTAGACGACAGG 60 NA Rattus norvegicus 81 Akr1b7 ENSRNOG00000009875 ENSRNOT00000013423 3 1 1 80 4 61857457 61857475 AGTACTGTCACTCCAAGGG 58 61857519 61857931 CCTCAGGCTTAGCATAAGG 57 NA Rattus norvegicus 81 Dsn1 ENSRNOG00000006236 ENSRNOT00000008254 3 1 1 80 3 153103212 153103662 TGTCAGTACAGCTCAAGAAGAG 60 153103153 153103172 TCTGTAGATGGAGCTTGAGC 59 NA Rattus norvegicus 81 Folr2 ENSRNOG00000019890 ENSRNOT00000026925 2 1 1 81 1 166919194 166919212 TCAACGTTTGCATGGATGC 60 166916038 166919150 TTCCATGGACTACACTGGTC 59 NA Rattus norvegicus 81 Trmt1l ENSRNOG00000002580 ENSRNOT00000003517 3 1 1 80 13 68786426 68790951 CTGAAAGCAAGAGACACATCTC 59 68790991 68791010 CAACATCTCCTTCAGTCCCA 60 NA Rattus norvegicus 81 Pkp4 ENSRNOG00000005504 ENSRNOT00000059246 1 1 1 80 3 45397240 45398289 GACTACGACAGCAAGACAG 58 45398332 45398351 CTGAGGGACTTCTAGTTCCA 58 NA Rattus norvegicus 81 Pkp4 ENSRNOG00000005504 ENSRNOT00000059246 2 1 1 80 3 45349308 45365582 CCTTGGAGATCAACAGATGTG 59 45365620 45365642 GAGATAGTTGTTGGGATGAACAG 59 NA Rattus norvegicus 81 Gna14 ENSRNOG00000014840 ENSRNOT00000020201 3 1 1 80 1 235167260 235167278 AGATTGAACGGCAACTTCG 59 235167322 235270822 CACTCTCACCAGTTCCCAG 60 NA Rattus norvegicus 81 LOC690276 ENSRNOG00000024338 ENSRNOT00000033550,ENSRNOT00000081004 3 2 2 145 6 42309237 42310287 ACCCTCTGGGAAATAAGAAGG 59 42309112 42309130 GAAGAAGTCCATGTGGCTG 59 NA Rattus norvegicus 81 Phf7 ENSRNOG00000018996 ENSRNOT00000044991 3 1 1 80 16 7326115 7326134 AAGTGTCGAGAACATCAGGA 59 7325527 7326073 GACGTGTGGGCATATTTCTG 59 NA Rattus norvegicus 81 LOC100363048 ENSRNOG00000032740 ENSRNOT00000050090 1 1 1 60 9 61552455 61552473 ATCGGCATGTTCTTCACTG 58 61552496 61552515 GAGTGTACTTGGTAGAGGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Onecut1 ENSRNOG00000008095 ENSRNOT00000032280 1 1 1 98 8 81767300 81767318 AGACTTTCCGGAGGATGTG 59 81792580 81792598 CGTGTTCTTGCTCTTTCCT 58 NA DesignNoJunction Rattus norvegicus 81 Pcsk1n ENSRNOG00000007112 ENSRNOT00000009794 1 1 1 94 X 15324582 15325006 CTGAGGTACTTGCTAGGGC 60 15324506 15324524 AAATCCTGGTCCACAGCTC 60 NA DesignNoJunction Rattus norvegicus 81 Rhob ENSRNOG00000021403 ENSRNOT00000008008 1 1 1 60 6 33690808 33690826 GACTACGATCGTTTACGGC 59 33690766 33690785 AGAAGCACATAAGGATGACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1092 ENSRNOG00000046735 ENSRNOT00000042742 2 1 1 80 7 15706419 15706439 GGGTTGGTGGATCATTTATGG 59 15524348 15706378 GATGGATCTCATTGGGTCCA 59 NA Rattus norvegicus 81 Sv2b ENSRNOG00000011160 ENSRNOT00000076087,ENSRNOT00000015084 3 2 3 80 1 136699332 136707667 TCATTCCACACTATGGCTG 57 136699270 136699288 CACAGACGATGACAAACAC 57 NA Rattus norvegicus 81 Ly49i4 ENSRNOG00000051600 ENSRNOT00000091932,ENSRNOT00000078219,ENSRNOT00000087796 1 3 5 80 4 164530392 164530412 GCATGAATGTAAACAGACCTG 58 164520728 164530352 TGAAGGAACTTCAGTTCATCC 58 NA Rattus norvegicus 81 Herpud2 ENSRNOG00000029995 ENSRNOT00000046432 3 1 1 80 8 26268005 26268705 TGCTGCTGGTTTATTTACACC 59 26267945 26267963 CAACATTGTTGGGAGCCTG 59 NA Rattus norvegicus 81 Spock3 ENSRNOG00000029903 ENSRNOT00000059750 3 1 1 80 16 28606060 28606081 GTCTGCATTACTCAAGATGCTC 60 28524197 28606024 TCCTCCTACTTCTTTCATACTGTG 60 NA Rattus norvegicus 81 Tmem205 ENSRNOG00000011747 ENSRNOT00000015684 3 1 1 81 8 22936445 22936463 ATCAACCTCTGCATCTTGG 58 22932504 22936400 GAAGCAGTAGGGTAAGCTG 58 NA Rattus norvegicus 81 RGD1563405 ENSRNOG00000009002 ENSRNOT00000011900 1 1 1 60 5 17399683 17399702 CTTAAGAGCTACGGAGTGAC 58 17399642 17399662 GAGTCTTATCATATGTGGCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Miox ENSRNOG00000008694 ENSRNOT00000011941 3 1 1 80 7 130310443 130310462 CACAGAACTTGGCATGTACC 59 130310502 130310619 TGGTATAGGTACTCATCATGGC 59 NA Rattus norvegicus 81 Fgf19 ENSRNOG00000020899 ENSRNOT00000028365 1 1 1 80 1 218058931 218061399 GATATACGGGCTGATTCGC 58 218061443 218061461 CTGTACTGGTTGTAGCCCA 59 NA Rattus norvegicus 81 Lhfpl2 ENSRNOG00000011032 ENSRNOT00000014795 3 1 1 87 2 23827752 23848447 GAATCGCAGGTCTGTTCCT 60 23848498 23848516 GCATATCGTCCACAGTCGA 60 NA Rattus norvegicus 81 Tm2d3 ENSRNOG00000011290 ENSRNOT00000015287 1 1 1 80 1 126586946 126586965 CTGGCTCAGTCAATAAAGGA 57 126587007 126588226 AGAGAACAGCTGATTCTCTG 57 NA Rattus norvegicus 81 Ilkap ENSRNOG00000020115 ENSRNOT00000027295 2 1 1 80 9 98519057 98520194 GAGATAGTCGGGCAATCCT 59 98518995 98519014 GATTGTGCTCTTTGCTGAGG 60 NA Rattus norvegicus 81 Colca2 ENSRNOG00000042165 ENSRNOT00000065744 1 1 1 80 8 55676700 55676718 TCAACTCTGCACAAATCGC 59 55675211 55676657 GCATCAGATGCAGGTTATGG 59 NA Rattus norvegicus 81 Pou3f2 ENSRNOG00000006908 ENSRNOT00000009043 1 1 1 60 5 36682279 36682298 TGAACAAGTGGTTGGAAGAG 58 36682238 36682257 ATCTTGTCTATGCTGGTGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrk2 ENSRNOG00000004048 ENSRNOT00000005438 3 1 1 80 7 132932365 132932383 CTGGCCCATCCAAATACGA 60 132932427 132932790 TAGAATTCCTCACGGCCTG 59 NA Rattus norvegicus 81 Emd ENSRNOG00000058882 ENSRNOT00000080990 2 1 1 80 X 156455442 156455460 GTACGAGACCCAGAGAAGG 59 156455244 156455400 GAATCCAAGTCTGAGAACCGA 60 NA Rattus norvegicus 81 Zfp879 ENSRNOG00000030517 ENSRNOT00000030035 2 1 1 80 10 36328512 36332748 AAGGTGTATACCTCGGGTG 59 36328450 36328469 TCTGGTGTTTCAAGACTTCC 58 NA Rattus norvegicus 81 Ltn1 ENSRNOG00000001602 ENSRNOT00000002180,ENSRNOT00000073948 1 2 2 80 11 27026480 27026500 TGGTTTCAACTATTCCCTTCC 58 27024745 27026439 AACCATTTGTACAAGCAAGC 58 NA Rattus norvegicus 81 Arfgef1 ENSRNOG00000005703 ENSRNOT00000007766 3 1 1 80 5 8738359 8738378 GGAGAGCTTGCAAACTTCAG 60 8738421 8738565 TGTTGGAGACCTGTTTCGT 59 NA Rattus norvegicus 81 Abcb6 ENSRNOG00000018697 ENSRNOT00000025627 1 1 2 80 9 82375183 82375768 TTTCACAGGTAACCCAGATCTC 60 82375124 82375143 CAATGGTGTCGTTGAAGAGG 59 NA Rattus norvegicus 81 Slc22a15 ENSRNOG00000033051 ENSRNOT00000021713 1 1 1 80 2 204298381 204300626 TTAACCAAAGATGGTTTGGTCG 60 204298322 204298342 ACATCACAATAAGACAGGCCA 60 NA Rattus norvegicus 81 Frzb ENSRNOG00000007765 ENSRNOT00000010247 2 1 1 80 3 67637095 67640680 GTAAGAAAGTCAAGCGCTGG 60 67637034 67637053 GATTCTGAGTGGAATCGCTG 59 NA Rattus norvegicus 81 Cct8 ENSRNOG00000001592 ENSRNOT00000002169 1 1 1 80 11 27130987 27131957 GAGTGGATCAGATCATCATGG 58 27130927 27130945 TTTGGTCATCATCCCAGTC 57 NA Rattus norvegicus 81 LOC100360165 ENSRNOG00000021313 ENSRNOT00000007659 3 1 4 83 4 167351782 167352654 GAGATCAAGAGATCAACAATGC 58 167353561 167353581 GGAGATCTGAATCTGAGTCCT 59 NA Rattus norvegicus 81 Hao1 ENSRNOG00000004601 ENSRNOT00000006330 1 1 1 80 3 127453248 127453267 TAAACATGGTGTGGATGGGA 59 127448722 127453206 AGGGCATCAATAGTAGCTGG 59 NA Rattus norvegicus 81 AABR07065886.2 ENSRNOG00000046401 ENSRNOT00000051410 2 1 1 83 6 143701895 143701996 TAACTGCTGGTGTCCACTC 59 143701830 143701850 AGGACATCTTTACTGAAGCCC 60 NA Rattus norvegicus 81 Ncaph2 ENSRNOG00000009598 ENSRNOT00000084776,ENSRNOT00000055808 3 2 2 80 7 130334181 130334200 TCTTTAGTGCAGGAAGATGG 57 130334243 130334340 CAGTGACAGGAACTCATCC 58 NA Rattus norvegicus 81 Eme2 ENSRNOG00000024867 ENSRNOT00000030458 1 1 1 83 10 14256052 14256070 ATGAGCAGGAACAGTTGCT 60 14255364 14256005 AAGGTGGGTCTGTCATCTG 59 NA Rattus norvegicus 81 Incenp ENSRNOG00000032929 ENSRNOT00000077823,ENSRNOT00000043387 3 2 2 80 1 225931391 225931750 AGAAGACAGAGAAGGCTAAGG 59 225931331 225931351 CCATCTCTTCCATCTTCTTGG 58 NA Rattus norvegicus 81 Stom ENSRNOG00000019147 ENSRNOT00000025904 1 1 1 80 3 14527708 14538115 AGTCCTTCAGGGATAATTCCA 58 14527648 14527667 TAAGCACGAAGATGAACGAG 58 NA Rattus norvegicus 81 Stom ENSRNOG00000019147 ENSRNOT00000025904 2 1 1 80 3 14527704 14538111 CTTCAGGGATAATTCCAAGGC 59 14527644 14527665 GTTATAAGCACGAAGATGAACG 58 NA Rattus norvegicus 81 Slc39a9 ENSRNOG00000005052 ENSRNOT00000006798,ENSRNOT00000089313 1 2 2 80 6 104322441 104323479 TAATGCTACATAAGGCTCCAG 57 104323521 104323539 TTCTGATTCGATTCCGCTC 58 NA Rattus norvegicus 81 Dapl1 ENSRNOG00000005743 ENSRNOT00000007632 2 1 1 130 3 45539342 45539361 CAGTTACAACTGGCACTCAG 59 45539454 45548546 ATCCCTCCAGCTTTCACTG 59 NA Rattus norvegicus 81 Abl2 ENSRNOG00000004305 ENSRNOT00000059524 2 1 1 80 13 74232370 74232853 CTTCATCCACAGAGATCTTGC 59 74232894 74232913 CTTAGACCAAAGTCAGCCAC 59 NA Rattus norvegicus 81 Asb1 ENSRNOG00000020322 ENSRNOT00000027528 2 1 1 80 9 98682293 98684484 AAAGAAGCCAGAAGTATTCCCA 60 98684524 98684543 CAGTCGGTATTTGCCAAGAG 59 NA Rattus norvegicus 81 Trafd1 ENSRNOG00000001351 ENSRNOT00000033984,ENSRNOT00000091375 1 2 2 80 12 40702376 40703017 TAAAGCAGCATGTGGAGAC 58 40703060 40703079 ACTTGACAACAGAAAGCTCC 59 NA Rattus norvegicus 81 Sycn ENSRNOG00000019879 ENSRNOT00000026907 1 1 1 80 1 85219881 85219899 CTCGACTGGAAGAGTACCG 59 85218950 85219840 ATCAATAGCACTTGCAGTAGAG 58 NA Rattus norvegicus 81 Hist3h2bb ENSRNOG00000031790 ENSRNOT00000041187 1 1 1 60 10 45297085 45297103 GTCAACGACATCTTCGAGC 59 45297043 45297062 GCTTGTTGTAATGAGCCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066965.1 ENSRNOG00000050239 ENSRNOT00000068080 1 1 1 90 9 23905326 23919865 CTGAAGGAAGGGTACTGCC 60 23905254 23905272 TCAGTCTTGTCCAAGGCAG 60 NA Rattus norvegicus 81 Wdr45 ENSRNOG00000009749 ENSRNOT00000013369 2 1 1 80 X 15622367 15622385 TTTGATACGCAGTCCAAGG 58 15622222 15622326 GCTGAAGTTAATGCAGTATAGG 57 NA Rattus norvegicus 81 Ncapg ENSRNOG00000038572 ENSRNOT00000058838 3 1 1 80 14 69905028 69905047 GCTTGTTGATCTGACAAGAC 57 69903552 69904986 TCATGTACTGTTAAGGCCTG 57 NA Rattus norvegicus 81 Btg4 ENSRNOG00000011277 ENSRNOT00000088320 2 1 2 80 8 55505670 55506234 GTGCTGTAGGTATGGTGAG 57 55506277 55506296 TGAGCTAATTCCCAGTTCTC 57 NA Rattus norvegicus 81 Lrrc6 ENSRNOG00000005233 ENSRNOT00000086263,ENSRNOT00000007250,ENSRNOT00000084875 2 3 3 86 7 107198092 107203731 AGTTAAAGTGGTTGGATGGC 59 107198025 107198044 TGATTTGCTGTTCAACTGCT 59 NA Rattus norvegicus 81 Sap30 ENSRNOG00000013218 ENSRNOT00000017652 2 1 1 80 16 36118400 36118418 CAGAAGGAAGAGGAAAGGG 57 36118460 36118827 TACAAATCAACCTCTGGAGTG 58 NA Rattus norvegicus 81 Thyn1 ENSRNOG00000047053 ENSRNOT00000073373,ENSRNOT00000085997 3 2 2 80 8 28050214 28051622 GTATAGACATGAAGTTCAGCATCG 60 28051660 28051679 GATAGTTGCGAACACCATCC 59 NA Rattus norvegicus 81 AABR07062266.1 ENSRNOG00000049892 ENSRNOT00000073394 2 1 1 61 4 166602670 166602690 AAGAATCTGATAGGTGGAGGA 58 166602713 166602744 AGCTTCTCCAGCTGTTCTC 59 NA DesignNoJunction Rattus norvegicus 81 LOC102557117 ENSRNOG00000047922 ENSRNOT00000030857 1 1 1 80 5 187369 187388 CTGGATCCTTCACAGAAGAG 57 187428 187640 CCAATTGTAACCTATAGCAGTG 57 NA Rattus norvegicus 81 Ptprk ENSRNOG00000047605 ENSRNOT00000020988 1 1 1 80 1 17464465 17464483 GAGAATGGTATGGCAGGAG 57 17463790 17464422 TTATAGCATTTCACCCGACC 58 NA Rattus norvegicus 81 Zc3h12c ENSRNOG00000012470 ENSRNOT00000080043,ENSRNOT00000016637 2 2 2 80 8 56656841 56656859 GCCACAAAGATATCACGGT 58 56646490 56656799 TTTCCTGATCTGTGATAAGGG 57 NA Rattus norvegicus 81 Vom2r16 ENSRNOG00000054736 ENSRNOT00000080747 3 1 1 80 1 62848043 62848062 ATTCAAGTGGGAAACAGCTC 59 62848105 62851634 ACACAGAAGATGGCATCTG 58 NA Rattus norvegicus 81 Cxcl16 ENSRNOG00000026647 ENSRNOT00000032926 3 1 1 80 10 57063702 57063934 TTCTTTATCAGGTTCCAGTTGC 59 57063643 57063661 GCAGTTCACTAGTTCACGG 59 NA Rattus norvegicus 81 Sp110 ENSRNOG00000033747 ENSRNOT00000056995 2 1 1 80 9 92602011 92603259 CATAAGATGATGGGAGTGGC 58 92601950 92601968 CTGATTCAGAGTCCTCTGC 57 NA Rattus norvegicus 81 Zfp110 ENSRNOG00000031328 ENSRNOT00000026298 1 1 1 80 1 65754795 65754816 TCAGTTAGAAGAAGCAGAAGAC 58 65747377 65754754 GAAGGCCCAGAACATTCTG 59 NA Rattus norvegicus 81 Oaf ENSRNOG00000009243 ENSRNOT00000012826 3 1 1 129 8 47513968 47513987 CCGTTAACTTCAGTCAGGGA 60 47512649 47513876 ACAGAACTGTCCACACCTC 59 NA Rattus norvegicus 81 Ptprf ENSRNOG00000019977 ENSRNOT00000078302,ENSRNOT00000027271 2 2 2 80 5 137053202 137053221 GCAATGAAGACATCTGTGCT 59 137052956 137053162 ATTGTACAGGATCTTGAAGGGT 59 NA Rattus norvegicus 81 rno-mir-3543-1 ENSRNOG00000050253 ENSRNOT00000062188 3 1 1 60 6 133716284 133716303 GTTCAAACCACGAGTTTGAC 58 133716243 133716261 TCTTGGTTTGAACCACAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dcun1d1 ENSRNOG00000012734 ENSRNOT00000068334,ENSRNOT00000080100 1 2 2 80 2 122504605 122507153 CATGACAGAGTTAGGATGTGAC 59 122504546 122504567 CCTGGTTCTTTCAATTCTTGCT 60 NA Rattus norvegicus 81 Cdc5l ENSRNOG00000019975 ENSRNOT00000027264 2 1 1 80 9 17954962 17956200 ATGGATGAGGATGAACTTGAG 58 17956240 17956260 TTTCCTCTTAGCCTTCTTTCC 58 NA Rattus norvegicus 81 Rgs16 ENSRNOG00000027024 ENSRNOT00000032236 3 1 1 98 13 71181675 71181693 AGAAGATCCGATCAGCCAC 59 71181749 71183322 CGTGATCTATGTTTACCTCTTTAGG 59 NA Rattus norvegicus 81 Rbmxl1b ENSRNOG00000059347 ENSRNOT00000081688 1 1 1 89 4 42186957 42186975 TTCTACAGCAGTTCAAGCC 58 42186885 42186903 CTAGAATCTGCTTCTGCCC 58 NA DesignNoJunction Rattus norvegicus 81 Plekha1 ENSRNOG00000020497 ENSRNOT00000027836,ENSRNOT00000078244 1 2 2 80 1 201475939 201477154 ATCATCTTCTATGCGGCAG 58 201478412 201478431 TTTGGATTCTGAAGGACAGC 58 NA Rattus norvegicus 81 Plekha1 ENSRNOG00000020497 ENSRNOT00000027836,ENSRNOT00000078244 3 2 2 80 1 201475937 201477152 TCATCATCTTCTATGCGGC 58 201478411 201478429 TGGATTCTGAAGGACAGCT 58 NA Rattus norvegicus 81 Plcb4 ENSRNOG00000033119 ENSRNOT00000042853,ENSRNOT00000049855,ENSRNOT00000045393 1 3 3 80 3 128929360 128929378 TGATCGGACATTTGATCCC 57 128929420 128930509 CCTGATATAACCTGCACTGAG 58 NA Rattus norvegicus 81 Dmp1 ENSRNOG00000002167 ENSRNOT00000061224 2 1 1 131 14 6896780 6896798 CTCCTTACGTTCCTCTGGG 59 6892317 6894171 GTCACTATTTGCCATGGGC 59 NA Rattus norvegicus 81 AABR07055413.1 ENSRNOG00000049415 ENSRNOT00000071785 3 1 1 83 7 2300749 2300830 TTGAACAGGACTGTGTCTC 57 2300877 2300895 GAAGGCAGCTAGAGATGTG 58 NA Rattus norvegicus 81 Prpg1 ENSRNOG00000010449 ENSRNOT00000079259,ENSRNOT00000077496,ENSRNOT00000013887 2 3 3 80 4 165986751 165988390 ATGGCTCAGATGAAGAGGTC 59 165985857 165985876 GACCATGTTTCTGGTTCTGC 60 NA Rattus norvegicus 81 Il2rb ENSRNOG00000048636 ENSRNOT00000077438,ENSRNOT00000075678 3 2 2 80 7 119707325 119707348 CTCACTACGTTAATCCATACTTGG 59 119706733 119707287 TGAATACGGATGCATCCTCC 60 NA Rattus norvegicus 81 Hoxc12 ENSRNOG00000016116 ENSRNOT00000021580 3 1 1 101 7 144548502 144548520 GGTATCTCCGTTGAACCCA 59 144549341 144549359 AACTTCGAATACGGCTTGC 59 NA DesignNoJunction Rattus norvegicus 81 Setd7 ENSRNOG00000013045 ENSRNOT00000017736 2 1 1 80 2 140588902 140588925 CCACTTTGATAAATCGACTTCCTC 60 140586240 140588864 ACATAAACCCTCTCGGACTC 59 NA Rattus norvegicus 81 Setd7 ENSRNOG00000013045 ENSRNOT00000017736 3 1 1 80 2 140588901 140588924 CACTTTGATAAATCGACTTCCTCC 60 140586239 140588864 AACATAAACCCTCTCGGACTC 60 NA Rattus norvegicus 81 LOC100909662 ENSRNOG00000022679 ENSRNOT00000072555,ENSRNOT00000087563 2 2 3 80 1 82898409 82898428 AGTCCAACCTTGTTCTATGC 58 82898069 82898366 AGATACTGAGGCTACCTCC 57 NA Rattus norvegicus 81 LOC100909662 ENSRNOG00000022679 ENSRNOT00000072555,ENSRNOT00000087563 3 2 3 80 1 82898408 82898427 GTCCAACCTTGTTCTATGCC 59 82898068 82898366 AAGATACTGAGGCTACCTCC 58 NA Rattus norvegicus 81 Atp5j ENSRNOG00000001551 ENSRNOT00000002116 1 1 1 107 11 24287378 24287396 ATCAGCAAGAGGTGGACAG 59 24286912 24287310 GGACTTCAAATTTGGGATCCTC 59 NA Rattus norvegicus 81 Ccdc103 ENSRNOG00000002905 ENSRNOT00000003890 3 1 1 85 10 90985987 90986385 CTATGAGGAGTTCAGAGGGA 58 90986432 90986451 ACACAAATCTCCTTCCTCCT 58 NA Rattus norvegicus 81 Dusp9 ENSRNOG00000055185 ENSRNOT00000087962 1 1 1 89 X 157169925 157169943 TCCACTACAAGCAGATCCC 59 157169586 157169873 AGGCCTCATCTATGAATGCA 59 NA Rattus norvegicus 81 Crip2 ENSRNOG00000005041 ENSRNOT00000006804 2 1 1 106 6 137956696 137956714 GCTGCAACAAGACACTGAC 60 137956783 137957035 GATATTCACGCCTTTGGGTC 59 NA Rattus norvegicus 81 Samd4b ENSRNOG00000019831 ENSRNOT00000026839 1 1 1 80 1 85357959 85359899 TCATGTTCCCTCCAGACTG 59 85359942 85359961 TCATGCTCAGACACAGAGAC 60 NA Rattus norvegicus 81 AC126960.1 ENSRNOG00000039860 ENSRNOT00000031118 2 1 1 80 4 26253506 26254143 AACTTCTATCGTAACCTGCAC 58 26253446 26253464 CTCCTGCTTCAGTTTGACC 59 NA Rattus norvegicus 81 St7l ENSRNOG00000014002 ENSRNOT00000019129,ENSRNOT00000084302 1 2 2 80 2 207368564 207375751 AGAGTTAAACAATGACTGTGCC 59 207375789 207375810 AACCTTTCAGCATCTACAATGG 59 NA Rattus norvegicus 81 Arrb2 ENSRNOG00000019308 ENSRNOT00000026207 2 1 1 80 10 57045510 57045827 AGTGTCTGTGAGACAGTATGC 60 57045869 57045887 TCTTGTTCAAGCTGAGCCA 60 NA Rattus norvegicus 81 Vhl ENSRNOG00000010258 ENSRNOT00000013727 1 1 1 80 4 145584479 145585516 ATCACATTGCCAGTGTATACC 58 145585558 145585576 CCTCCTGTAGTTCTCAGGC 59 NA Rattus norvegicus 81 Ipp ENSRNOG00000016183 ENSRNOT00000082602,ENSRNOT00000021850 1 2 2 80 5 135363565 135366388 TGCAGTAGGTGGATACACG 59 135366430 135366450 GTATCGAAACGCTCTACACAG 59 NA Rattus norvegicus 81 Olfml3 ENSRNOG00000019211 ENSRNOT00000026075 1 1 1 82 2 206221243 206221261 ATGAGAAGGTGACTGGAGG 58 206220686 206221198 GTAGCTACAGTCTGTCACCA 59 NA Rattus norvegicus 81 Tm4sf5 ENSRNOG00000019510 ENSRNOT00000026437 1 1 1 88 10 57117473 57117706 CTTCCAAGAAACCCAAGGC 59 57117758 57117776 TCACATTCCAGGGTACCAC 59 NA Rattus norvegicus 81 Ict1 ENSRNOG00000032780 ENSRNOT00000045875 2 1 1 82 10 103961976 103962235 CTTCAGAGACTCAGGATTGAG 58 103962278 103962297 CTCCTGCTTGTCTTTATGGT 58 NA Rattus norvegicus 81 Ankub1 ENSRNOG00000043466 ENSRNOT00000057909 1 1 1 87 2 147805168 147805186 GTCTACTGTCTCCGGACAC 59 147800256 147805118 GAAGTGTTGTGCCGATATCC 59 NA Rattus norvegicus 81 Klhl8 ENSRNOG00000002214 ENSRNOT00000003026,ENSRNOT00000081600 2 2 2 80 14 7205015 7206509 CTCTGTGGAAGGGAAAGTG 58 7206553 7206571 AGAGGGTCAAACATCTCCA 58 NA Rattus norvegicus 81 Zfp3 ENSRNOG00000005009 ENSRNOT00000006641 1 1 1 283 10 57386705 57386723 TGAATTAGGGCGAGAGCAG 60 57392763 57392781 ATGTCTTCCTTGGGAAGCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC685881 ENSRNOG00000051000 ENSRNOT00000074294 2 1 1 60 6 24562945 24562963 TCCTGCTCATGATACTGGG 59 24562903 24562921 GACACCAGGTAGACCAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eppin ENSRNOG00000028908 ENSRNOT00000019829 1 1 1 97 3 161048718 161048736 CTTTGTACCAGGGACAGGG 60 161045051 161048659 AGGCTGCAAATATCTTGTTGG 59 NA Rattus norvegicus 81 AABR07065923.1 ENSRNOG00000005826 ENSRNOT00000007683 1 1 1 60 6 146394926 146394944 TAAGACCAAGGAAGCACGA 59 146394968 146394986 GATCTCCTCCTTCTTGGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdh18 ENSRNOG00000009949 ENSRNOT00000013343 1 1 1 80 2 138829941 138830051 CCAGGAGCTATAGATATGCCC 59 138829881 138829900 CTCCTGCTTCACTATCTCCA 59 NA Rattus norvegicus 81 Vom2r67 ENSRNOG00000031928 ENSRNOT00000061889 1 1 1 80 14 1321538 1321558 TCAGAAAGAAACAGCAGACTG 59 1321597 1322767 TCCATATCTGCTGTATCATTGG 58 NA Rattus norvegicus 81 Ly6g5b ENSRNOG00000027516 ENSRNOT00000086413 3 1 2 81 20 5107850 5107870 GAAATTCCATAATGAGGGCCT 58 5107308 5107808 CGAACCTTAACATCCTTCCC 58 NA InUTR Rattus norvegicus 81 Mta3 ENSRNOG00000004685 ENSRNOT00000079095,ENSRNOT00000061921 3 2 2 80 6 6966157 6967828 TTACCAGATGGCTCAGATACC 59 6967871 6967890 GATTTCACCTTTGTCAGCCA 59 NA Rattus norvegicus 81 Pex12 ENSRNOG00000009718 ENSRNOT00000013233,ENSRNOT00000082684 3 2 2 80 10 70515858 70515876 TTTGAGGTGGTAGCACAGG 60 70515534 70515816 TGATTCTGCAAGAACCTTGAC 59 NA Rattus norvegicus 81 Mpp3 ENSRNOG00000033653 ENSRNOT00000084266,ENSRNOT00000028264 3 2 2 80 10 89949750 89949768 AATCCCAGGGATCCATCAC 59 89946490 89949706 GCATGAACACCTTGCTCTC 59 NA Rattus norvegicus 81 Zc2hc1a ENSRNOG00000022356 ENSRNOT00000066966,ENSRNOT00000090866 3 2 2 80 2 96500106 96500127 GCACGTATTAGTAATAAGGGCA 59 96498493 96500066 CGGAGATGGCTTATACTGTG 58 NA Rattus norvegicus 81 Btg3 ENSRNOG00000001555 ENSRNOT00000002121 3 1 1 80 11 16882119 16886328 CAAGCCTACAGATGCATTCG 60 16882058 16882076 GATGCAGCTGTTCTCACAG 59 NA Rattus norvegicus 81 Gpr45 ENSRNOG00000016446 ENSRNOT00000021999 1 1 1 60 9 49839040 49839058 CCTGTGGCTCAGTTACCTC 60 49839080 49839100 TTTGATCCTCCAGCAGTAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr45 ENSRNOG00000016446 ENSRNOT00000021999 2 1 1 60 9 49838229 49838248 TGATGCTGCTGATGATTGTG 59 49838271 49838289 TACACGATGATGCAGACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 F2rl3 ENSRNOG00000048186 ENSRNOT00000072664 2 1 1 68 16 18819728 18819748 AGCATCTACGACGATGTAGAG 59 18819380 18819398 AAGTTCTACTGTGGGACGC 60 NA DesignNoJunction Rattus norvegicus 81 Wbp11 ENSRNOG00000005505 ENSRNOT00000082235,ENSRNOT00000007402 2 2 2 88 4 170161996 170162975 TTTGATGCCGTCAAGAACG 59 170161926 170161945 TGGATCAGGATGTTGGAAGG 60 NA Rattus norvegicus 81 Olr879 ENSRNOG00000043438 ENSRNOT00000064380 2 1 1 60 7 3706546 3706565 GAACCATCCTCAGATTCCCA 59 3706505 3706526 GAAGAACAAGTAGAGAAAGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stk25 ENSRNOG00000018181 ENSRNOT00000024487 3 1 1 80 9 100770045 100770064 TGAGCCTATCAAGAGACAGC 59 100769084 100770003 TGCTTCTCTTTGAGCTCTCC 60 NA Rattus norvegicus 81 Map3k7cl ENSRNOG00000001584 ENSRNOT00000002158,ENSRNOT00000084580 1 2 2 80 11 27237362 27237382 TAAACAGCACTGCCAAATAGC 60 27237423 27250680 AGCTCCTTCTTCCTTTCCTC 59 NA Rattus norvegicus 81 Gpank1 ENSRNOG00000000848 ENSRNOT00000001124,ENSRNOT00000076738 1 2 2 96 20 5115205 5115778 AGAACCAGAACCGATCACC 59 5115838 5115856 AGGTGAGCAGTAGATGTGC 60 NA Rattus norvegicus 81 Grk5 ENSRNOG00000011439 ENSRNOT00000015687 3 1 1 80 1 282354467 282354488 CAAGAAGTGGAAGGAAATCCTG 59 282354523 282396519 TAGTAATCTCTGTCTATGGTTCTCC 59 NA Rattus norvegicus 81 Smap1 ENSRNOG00000049127 ENSRNOT00000071330 3 1 1 80 9 30107324 30122516 ACCAGAACAGATACAGTGCA 59 30107263 30107283 AAGTTCTCTGGAAGATTGGCT 60 NA Rattus norvegicus 81 LOC100912512 ENSRNOG00000016653 ENSRNOT00000022485 1 1 1 80 9 94574759 94576538 CAAGGAGCTAGAAATGGTGG 58 94574698 94574719 TGAATGCTGATCATCTGTTCTG 59 NA Rattus norvegicus 81 Ccdc24 ENSRNOG00000019586 ENSRNOT00000068130,ENSRNOT00000081925 1 2 2 88 5 136704961 136705436 TGTCAGACACCTGAGAAGC 59 136704559 136704577 GCTCCATTTCCAGACAGTG 59 NA Rattus norvegicus 81 C1rl ENSRNOG00000011718 ENSRNOT00000015678 3 1 1 80 4 157120558 157120671 AAGGAAGAACAGACAGGGAC 59 157120713 157120732 CTCAGGAACCTCTTCTCCAC 60 NA Rattus norvegicus 81 Pign ENSRNOG00000014866 ENSRNOT00000020752 1 1 1 80 13 25575870 25577071 TTGATGACGTAGTGTCCCTC 59 25575809 25575832 GTCTGTCGTAAGTGTGATAATAGG 59 NA Rattus norvegicus 81 Otud5 ENSRNOG00000008764 ENSRNOT00000006233 1 1 1 80 X 15472593 15472611 CTCTTGTGTCCCTCTACCC 59 15472252 15472550 AATCATTCAGACCAAAGGCA 58 NA Rattus norvegicus 81 Elp6 ENSRNOG00000020847 ENSRNOT00000028288 3 1 1 82 8 118535859 118539824 GCGAACTGAAGGGAAATGTG 60 118539864 118539887 GCCATTCAGTAGGATGTTATTCTC 60 NA Rattus norvegicus 81 Prss2 ENSRNOG00000045612 ENSRNOT00000029319 1 1 1 90 4 70625783 70626164 TCTTGGTGTGAACAACCCA 59 70625711 70625730 GATCTTTCCAGGGTAGGAGG 59 NA Rattus norvegicus 81 Hnrnpl ENSRNOG00000020235 ENSRNOT00000027425,ENSRNOT00000027494,ENSRNOT00000057034 1 3 3 80 1 87004746 87005047 AGATGAATGTCTGTGTCTCC 57 87005090 87005108 TGTAACTGCAAGATCCGTC 58 NA Rattus norvegicus 81 Bccip ENSRNOG00000018066 ENSRNOT00000024355 1 1 1 80 1 205777589 205777608 GAGGATGAGGAAGAAGACGA 59 205777650 205782879 ATTCACTTCCTCATCCACGA 59 NA Rattus norvegicus 81 Kcnd3 ENSRNOG00000014686 ENSRNOT00000051835,ENSRNOT00000047827 3 2 3 125 2 208131872 208131890 ATGAAGCTCTGGAGCTGAC 60 208132308 208134870 CAATAAACTCGTGGTTAGTGGTC 60 NA Rattus norvegicus 81 Trio ENSRNOG00000012148 ENSRNOT00000016784 3 1 1 80 2 80593742 80593760 GGAACGCAAGATCAAGCTG 60 80590318 80593699 TCAAGGTCCGAGATGATGTC 59 NA Rattus norvegicus 81 Cbwd1 ENSRNOG00000015516 ENSRNOT00000021185 3 1 1 81 1 242856203 242858242 AATGAATTTGGAGAAGGGAGTG 59 242856143 242856164 GTTCCAGCCATTCTTCATAGAG 59 NA Rattus norvegicus 81 Mbl2 ENSRNOG00000011637 ENSRNOT00000050984 3 1 1 80 1 248447926 248457948 TTGATCCATGCAGCAACAG 59 248457991 248458010 TGAAATGTGAACGCTTTGCT 59 NA Rattus norvegicus 81 Krtap2-4l ENSRNOG00000056967 ENSRNOT00000071705 3 1 1 138 10 87521535 87521553 GATCCTTCTCCTCCCAGAG 58 87521415 87521434 CAGATGGGCCTAGTGTAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 E2f7 ENSRNOG00000026252 ENSRNOT00000031986 3 1 1 81 7 53294806 53294824 AGGAAAGATGGGTCTCCAG 58 53294869 53296257 TGTTTGCAGATGAAGAGGG 58 NA Rattus norvegicus 81 LOC100359763 ENSRNOG00000013191 ENSRNOT00000017602 2 1 1 60 7 93376582 93376600 CAAGCTGGTTTCAAAGCAC 58 93376623 93376642 ATCTCCACCCTTTGTGTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049783.1 ENSRNOG00000049373 ENSRNOT00000072631 3 1 1 60 5 137708841 137708861 ATTCTGGATATGGGCTATGTC 57 137708883 137708901 CACAGACCAGATGTACCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plbd1 ENSRNOG00000008933 ENSRNOT00000011930 2 1 1 80 4 170591277 170591296 TGGGACTTCAACATCAAGGA 59 170569673 170591235 CAGAGACTCCAAGAACCCTG 60 NA Rattus norvegicus 81 Esam ENSRNOG00000033217 ENSRNOT00000050609,ENSRNOT00000083778 2 2 2 80 8 40004702 40007172 GACCAGCCTTAGATACCGT 59 40007215 40007234 CCTTGCAGACATAGACTCCA 59 NA Rattus norvegicus 81 Crhbp ENSRNOG00000017890 ENSRNOT00000024191 3 1 1 80 2 25153188 25153207 AACTTCAAACTCCAATGCCA 58 25152790 25153146 TTCTTGCACCTCTAGGTAGC 59 NA Rattus norvegicus 81 Elmod1 ENSRNOG00000009054 ENSRNOT00000012041 3 1 1 80 8 58500951 58500969 CTTCCAAGGTGATGATCCG 58 58499388 58500907 CGTTCTGCGAAATATTGCA 57 NA Rattus norvegicus 81 LOC100911119 ENSRNOG00000032769 ENSRNOT00000046355 1 1 2 88 3 143804039 143804058 GCTACAAGATGACCAATGCA 59 143803890 143803991 ACAATCCATGAATCTTCAGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Hnf4g ENSRNOG00000008971 ENSRNOT00000086760,ENSRNOT00000011890 1 2 2 80 2 100233045 100236019 TTTGCTTCTGGGAAACCAC 59 100232983 100233002 TCAAGAACTCTATTGGCCAC 58 NA Rattus norvegicus 81 Slc20a1 ENSRNOG00000018567 ENSRNOT00000025294 3 1 1 80 3 121735570 121735694 ATGGTACTATCAATGGTGCAG 58 121735736 121735754 AGTTGATCTGGTTGCTGAC 58 NA Rattus norvegicus 81 Otos ENSRNOG00000016567 ENSRNOT00000090382,ENSRNOT00000022220 3 2 2 105 9 99821634 99821652 TGCACTTGGTAAGGATGCA 60 99820730 99821415 TTGGGATCTGCTTCCTCTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ckap2l ENSRNOG00000026143 ENSRNOT00000039794 3 1 1 83 3 121804886 121804905 GTTACTGGCAAGTAAAGGCC 59 121799990 121804840 AGCTCCTGTATTGGTGCTG 60 NA Rattus norvegicus 81 AABR07011278.1 ENSRNOG00000046074 ENSRNOT00000075563 2 1 1 80 2 160291875 160291893 GAAACTACTGGCTGACCAG 58 160292210 160292228 GTGGGTACTTGTTCCTCTC 57 NA DesignNoJunction Rattus norvegicus 81 Nat1 ENSRNOG00000014055 ENSRNOT00000018854 2 1 2 87 16 23972369 23984541 CTTGTGCAATTGACTGGGAG 60 23972301 23972321 GGCCAAGTCCAACTTATTCAC 60 NA InUTR Rattus norvegicus 81 Ick ENSRNOG00000008691 ENSRNOT00000078159,ENSRNOT00000012257 1 2 2 80 8 85437470 85442944 GGGAGGTTAAGTCTTTAAAGAAGC 60 85442983 85443001 AGAGATGGTCGTTCTCCCT 60 NA Rattus norvegicus 81 Bad ENSRNOG00000021147 ENSRNOT00000028712 1 1 1 81 1 222206395 222206954 TTCCTTCAAGGGACTTCCTC 59 222206998 222207016 GATAATGCGCGTCCAACTG 60 NA Rattus norvegicus 81 AC118490.1 ENSRNOG00000010101 ENSRNOT00000013395 3 1 1 85 3 75414689 75414712 GCTTGGCCATTCTGTATAAGAG 59 75414756 75414776 AATAGCTCTGTCACAGTCTCG 60 NA Rattus norvegicus 81 Sel1l2 ENSRNOG00000004852 ENSRNOT00000081589,ENSRNOT00000033562,ENSRNOT00000085149 1 3 3 80 3 134293428 134293450 TATTATCTAGCCGAGATGTACGC 60 134292330 134293391 GACTCCTTTATAAAGCTCCACG 59 NA Rattus norvegicus 81 Sel1l2 ENSRNOG00000004852 ENSRNOT00000081589,ENSRNOT00000033562,ENSRNOT00000085149 3 3 3 80 3 134293428 134293446 ATCTAGCCGAGATGTACGC 59 134292326 134293388 CACAGACTCCTTTATAAAGCTCC 59 NA Rattus norvegicus 81 Polr2k ENSRNOG00000010408 ENSRNOT00000013869 2 1 1 146 7 74990054 74990073 ATGTTCAACCACCAAAGCAG 59 74990516 74992339 AAACCACCAATCTCTTAGTCCT 59 NA Rattus norvegicus 81 Zfp266 ENSRNOG00000034037 ENSRNOT00000042903,ENSRNOT00000085060 2 2 2 80 8 21518761 21518781 CATTCCTAGTCTGACTCCCTG 59 21517638 21518719 TGCAGTTCCAATTGCTGAG 59 NA Rattus norvegicus 81 Gca ENSRNOG00000007359 ENSRNOT00000009697 1 1 1 80 3 48649041 48649059 TGAGGTGGATGCTGAAGAG 59 48649102 48654722 GTTTCCAAGCTGAAAGGAGC 60 NA Rattus norvegicus 81 Pced1b ENSRNOG00000022807 ENSRNOT00000037874 3 1 1 84 7 138739127 138739145 CTCAGATCCCAGAGGACAC 59 138739193 138742250 GTCCGGTTCATTCCTACGT 60 NA InUTR Rattus norvegicus 81 Muc16 ENSRNOG00000039931 ENSRNOT00000061339 3 1 1 80 8 18489326 18489349 CTCTATGTGAATGAAGACAGTCTC 59 18479452 18486747 TGTGTCAGGATTTATGGTTGG 58 NA Rattus norvegicus 81 Efcab9 ENSRNOG00000004142 ENSRNOT00000005509 3 1 1 86 10 17409694 17415131 AGGAACACCTTGAATGATGTG 59 17409628 17409652 GTCGAATATCATCTTGATCTGTGAG 60 NA Rattus norvegicus 81 Junb ENSRNOG00000042838 ENSRNOT00000067780 1 1 1 60 19 26094384 26094404 CTCTTCACGACTACAAACTCC 59 26094344 26094362 CGATAAGGATCTGCCAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ms4a4c ENSRNOG00000020997 ENSRNOT00000033613 3 1 1 80 1 227655098 227656557 CAAAGAGCCTGGTCATCAG 58 227656601 227656619 CAACACCCATTATGCTTGC 58 NA Rattus norvegicus 81 Col4a3bp ENSRNOG00000015686 ENSRNOT00000021549 3 1 1 80 2 27425833 27425855 CTCTGCAGAAGTACTTTGATGTC 60 27425891 27434587 CATCGTCTTCTACCACTTTATCC 59 NA Rattus norvegicus 81 Ston1 ENSRNOG00000016688 ENSRNOT00000022370 2 1 1 81 6 12374560 12378092 AAACACAAGTCCCGATCAG 58 12378136 12378155 ATCCCAATCTGAAGGAACCT 59 NA Rattus norvegicus 81 Dgkq ENSRNOG00000024112 ENSRNOT00000032056 2 1 1 80 14 2074326 2074420 ACGATTATGACACGTATCACCA 60 2074459 2074479 AAGTCTTCCTACAGACCTCAC 59 NA Rattus norvegicus 81 Dgkq ENSRNOG00000024112 ENSRNOT00000032056 3 1 1 80 14 2075857 2075876 TGTGAACTCCCAGAGTACAG 59 2075918 2076069 CTCTCCTGATCCTCAACCTG 59 NA Rattus norvegicus 81 Olr442 ENSRNOG00000033543 ENSRNOT00000041926 1 1 1 60 3 72818024 72818045 TCTGAGGAGAATATGAAAGTGG 57 72817985 72818003 GGTTCAGCATGGGAATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC118147.2 ENSRNOG00000060693 ENSRNOT00000087411 1 1 1 80 1 88132244 88132262 CCTTGCTACGACATCATCC 58 88132076 88132202 GTCTACACCTCTATTGCTCAC 58 NA Rattus norvegicus 81 Mtmr10 ENSRNOG00000016090 ENSRNOT00000021530 3 1 1 80 1 125154699 125154799 AAGAAGAATGCCATGCTGG 59 125154842 125154861 TGCAGCACATCTTTGATGAG 59 NA Rattus norvegicus 81 Psmg1 ENSRNOG00000001643 ENSRNOT00000002242 1 1 1 80 11 36330321 36330339 GTTGGACCTTGTCACAGTC 58 36327973 36330277 TCAGGGATGTTCTTCACCA 58 NA Rattus norvegicus 81 Cwf19l1 ENSRNOG00000012763 ENSRNOT00000017202 2 1 1 80 1 263908544 263909289 GAACTTTGATCTGCTGTTGTG 58 263908484 263908503 CTGCCAGTCCTATACTCCTC 59 NA Rattus norvegicus 81 Syt6 ENSRNOG00000019163 ENSRNOT00000025953,ENSRNOT00000077739 2 2 2 80 2 206076486 206076504 ACAATCTCTTCGAGGCCTC 59 206076547 206109302 CCACACTTTCACTAGTAGCG 58 NA Rattus norvegicus 81 Pth1r ENSRNOG00000020948 ENSRNOT00000028435 2 1 1 82 8 118989360 118989379 TGAGATGCTCTTCAACTCCT 59 118988588 118989237 TAATCTCTGCCTGCACCTC 59 NA Rattus norvegicus 81 Cnot7 ENSRNOG00000012263 ENSRNOT00000016882 3 1 1 80 16 54901060 54901080 GCTTGTAACCTGGATGAAGAG 59 54901122 54903297 AAACTCGGTGTCCATAGCA 59 NA Rattus norvegicus 81 Rrm2b ENSRNOG00000025454 ENSRNOT00000033704 1 1 1 80 7 76774739 76774759 TCCAGTACCCTGATATTTGGA 58 76763178 76774697 CCTTGGACAAGTCAACCTC 58 NA Rattus norvegicus 81 Bend6 ENSRNOG00000052376 ENSRNOT00000078157,ENSRNOT00000088824 1 2 2 80 9 38342985 38343003 CAACTCTACTTCCAGCTCC 57 38343047 38344622 CTCTCAATCGTGAACTGCT 58 NA Rattus norvegicus 81 Apoa1 ENSRNOG00000045679 ENSRNOT00000074357 3 1 1 87 8 50525606 50525624 TGGATGCAGTCAAGGACAG 60 50525674 50526242 TCCAGGAGATTCAGGTTCAG 59 NA Rattus norvegicus 81 Zfp451 ENSRNOG00000012718 ENSRNOT00000017022 3 1 1 81 9 38430517 38431078 AACTGGGTGACGATAAGGG 59 38431123 38431141 TCTTTGCACAGAGACACCA 59 NA Rattus norvegicus 81 AABR07061614.2 ENSRNOG00000053654 ENSRNOT00000088301 3 1 1 60 4 136228549 136228568 CCTCAAGGATCTTACACGGA 59 136228505 136228524 AAGTCTTTCAGCTTCTTGCG 59 NA DesignNoJunction Rattus norvegicus 81 Bloc1s2 ENSRNOG00000012684 ENSRNOT00000017006,ENSRNOT00000090755 3 2 2 88 1 263917747 263917765 CTCACGAGCTTGAAGTACC 58 263916774 263917695 AGTCCGGCATATTTCTGGT 59 NA Rattus norvegicus 81 AABR07055492.1 ENSRNOG00000056878 ENSRNOT00000077369 1 1 1 82 7 4127104 4127122 AAGCCATCAACACCAAGGT 60 4127039 4127057 GAGCTAGGTCCTTTGGGTG 60 NA DesignNoJunction Rattus norvegicus 81 Siah1 ENSRNOG00000015143 ENSRNOT00000020329 1 1 1 60 19 21394318 21394337 ACAAGTCCATTACCACCCTG 60 21394358 21394378 AGGTTAATGTCTGTAGCAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043748.1 ENSRNOG00000046621 ENSRNOT00000072666 3 1 1 60 19 38343930 38343949 AGTTGCGAAAGGTGAAAGAG 59 38343889 38343907 TGCTTACTCTGCTCCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Oas1d ENSRNOG00000048485 ENSRNOT00000057258 2 1 1 80 12 42372521 42372539 AACACTTCCTGAAGCATCC 58 42369440 42372480 TCTCCTTACACAGTTGATACCA 59 NA Rattus norvegicus 81 Gyg1 ENSRNOG00000011146 ENSRNOT00000014837,ENSRNOT00000080699 1 2 2 95 2 104952163 104952433 GATGCAGATACTCTGGTTCTC 58 104952088 104952106 ATTGAAACAGTCAGGCCAC 58 NA Rattus norvegicus 81 Gyg1 ENSRNOG00000011146 ENSRNOT00000014837,ENSRNOT00000080699 3 2 2 97 2 104952163 104952433 GATGCAGATACTCTGGTTCTC 58 104952086 104952105 GAATTGAAACAGTCAGGCCA 59 NA Rattus norvegicus 81 Rpgrip1l ENSRNOG00000011829 ENSRNOT00000015876 1 1 1 80 19 17138781 17140740 CTTCAAGAGAAGCAAAGAACAC 58 17140779 17140799 CTTAAGCTGCATGTTTAGCTC 58 NA Rattus norvegicus 81 Fam189a1 ENSRNOG00000023496 ENSRNOT00000031488 3 1 1 88 1 125648316 125648334 GTGTGATGCTCAACTTGGC 60 125615664 125648265 AAACTTGATCAACTGGCAGC 60 NA Rattus norvegicus 81 Nit1 ENSRNOG00000003881 ENSRNOT00000005194 2 1 1 80 13 89724459 89724477 GAGACATTACTCCTGTCCG 57 89724293 89724415 CCAGATTCCACATTCCCTG 58 NA Rattus norvegicus 81 LOC100362981 ENSRNOG00000034226 ENSRNOT00000047211 3 1 1 132 8 33120952 33120970 CTTCATTGTCTGTGGGACC 58 33104775 33105690 GATGAGGGACCAGTAAATGTG 59 NA Rattus norvegicus 81 Klf4 ENSRNOG00000016299 ENSRNOT00000022255 1 1 1 88 5 72285503 72285521 CTTGTGACTATGCAGGCTG 59 72284316 72285451 GTAAGGTTTCTCGCCTGTG 59 NA Rattus norvegicus 81 Wiz ENSRNOG00000006217 ENSRNOT00000008303 3 1 1 80 7 14380085 14381995 CGCTGAATCTCACTTCAGG 58 14380023 14380044 CCTTTCTGTTCTCAAAGAACTC 57 NA Rattus norvegicus 81 Myl12b ENSRNOG00000015733 ENSRNOT00000048125 1 1 1 124 9 119311097 119321423 CAGGTCAGATTTGAACCGC 59 119310991 119311009 GAACTCCTGGATCTGGGAC 59 NA InUTR Rattus norvegicus 81 Rbpjl ENSRNOG00000026295 ENSRNOT00000019127 2 1 1 80 3 160860143 160860161 AGGTTACATCCGCTATGGT 58 160860203 160860498 TTTCGGATGATCATAGGAGGA 58 NA Rattus norvegicus 81 Smchd1 ENSRNOG00000014319 ENSRNOT00000019359 2 1 1 80 9 119698502 119698523 ATTTAAAGAGACCCAGCTACGA 59 119697231 119698464 TCAATGTGAGGTATCTGTTGTG 59 NA Rattus norvegicus 81 AABR07006542.1 ENSRNOG00000021811 ENSRNOT00000029774 1 1 1 60 1 239319414 239319433 TGAAGGATGGGAAGATGGTG 60 239319373 239319393 TAGACCCGAGTACAGATAGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp21 ENSRNOG00000038347 ENSRNOT00000058390 1 1 1 80 13 89655466 89655697 ACAATGACTCCCGTGTCTC 59 89655404 89655424 GCATCAATTGGTAGAACAGCA 59 NA Rattus norvegicus 81 Usp21 ENSRNOG00000038347 ENSRNOT00000058390 3 1 1 80 13 89657840 89658038 CCTTCTCTGGATACAGCCAG 60 89657779 89657797 GTCGGTTGATTTCGAGGTG 59 NA Rattus norvegicus 81 Nabp2 ENSRNOG00000023480 ENSRNOT00000031362,ENSRNOT00000086656 1 2 2 88 7 2824135 2824306 GATTGGAGAATTCTGCATGGT 59 2824067 2824085 ATTTGTTGGATGCCTGCTG 59 NA Rattus norvegicus 81 Tusc5 ENSRNOG00000022239 ENSRNOT00000063941,ENSRNOT00000082301 1 2 2 88 10 63476653 63490909 CCATCATGTCTCGAAGTAGTG 58 63476585 63476603 GAAGGTGATGCTAAGCAGC 59 NA Rattus norvegicus 81 Cyld ENSRNOG00000014048 ENSRNOT00000018888,ENSRNOT00000091626 2 2 2 82 19 19267460 19267478 GAGAGTGCTATGATGACCC 57 19267142 19267414 ATGAAGGTGAACCTGAGTG 57 NA Rattus norvegicus 81 Ptprr ENSRNOG00000004483 ENSRNOT00000006401,ENSRNOT00000085073 3 2 2 123 7 59302553 59304080 GTCTTGAAGCGAGGAAGTC 58 59304167 59304185 TGTCTTCCTCTACGTCCAG 58 NA Rattus norvegicus 81 Plekha3 ENSRNOG00000011830 ENSRNOT00000016132 1 1 1 80 3 63548012 63548032 CAGCAGGTTCATACAATCCAG 59 63548070 63549078 GGCTTCATTCATGTTCTCTACAC 60 NA Rattus norvegicus 81 AC109707.1 ENSRNOG00000049527 ENSRNOT00000050715 1 1 1 69 13 31752889 31753063 GGCAATCATAGTGGAAGCA 58 31752838 31752857 ACTGGTTGTTGTAATTGCCA 58 NA DesignRelaxed Rattus norvegicus 81 Mrps11 ENSRNOG00000018531 ENSRNOT00000025008 3 1 1 85 1 140478231 140483146 TCGCTTCAGCATTTACCCT 59 140483195 140483213 GTGCAATTGGGACTTCCTC 59 NA Rattus norvegicus 81 Il21 ENSRNOG00000017376 ENSRNOT00000023348 1 1 1 80 2 123972254 123972274 TTCTGATTAGACTTCGTCACC 58 123972079 123972215 TTAGAAGTTCAGGATCCAAGTC 58 NA Rattus norvegicus 81 Rn60_10_0876.8 ENSRNOG00000059238 ENSRNOT00000086748 3 1 1 60 10 87797973 87797992 TCCCATGTAAACACCAACAC 58 87798014 87798033 TTGGTCTGATATGACAAGGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asb8 ENSRNOG00000010099 ENSRNOT00000013704,ENSRNOT00000079377 2 2 2 79 7 139730131 139730149 GAGTTGCTCCTGGAGAAGG 60 139726049 139726067 TTCTCTGCTGCATAGTGGA 58 NA DesignNoJunction Rattus norvegicus 81 Tmem245 ENSRNOG00000026271 ENSRNOT00000064043,ENSRNOT00000032299 3 2 2 80 5 73926628 73927443 TTCATACCATCAGCTTTGGC 59 73926567 73926585 TAGAACTGCAGGTACTGCT 58 NA Rattus norvegicus 81 Wfdc8 ENSRNOG00000014771 ENSRNOT00000055160 1 1 1 83 3 161064488 161064506 CAGACTTCAACTGTGAGGC 59 161062136 161064441 GGCAGGGTTCTTCATAAGG 58 NA Rattus norvegicus 81 Pi4k2a ENSRNOG00000014675 ENSRNOT00000019874 1 1 1 80 1 261358253 261358274 TTCTTCCAAAGATTTCAGACCC 59 261358312 261358809 AACCAGGATCTTTCTTGAAGAG 58 NA Rattus norvegicus 81 AABR07054045.1 ENSRNOG00000057476 ENSRNOT00000084576 1 1 1 86 3 137632429 137632447 GCCAGAAGGATTTCAAGGG 59 137632358 137632382 TAATAGGTGTAGCCATCTTCAC 58 NA DesignNoJunction Rattus norvegicus 81 Trim14 ENSRNOG00000008922 ENSRNOT00000086962 1 1 2 82 5 62141319 62151147 AAAGGCTCAAGGTTTCTGC 59 62141255 62141278 CTCTTCATCAAGGAGTAATCTGAG 59 NA Rattus norvegicus 81 Oxr1 ENSRNOG00000056487 ENSRNOT00000081948,ENSRNOT00000084940,ENSRNOT00000091355,ENSRNOT00000078354,ENSRNOT00000079962 2 5 5 80 7 80780605 80780626 CCGTTTAAAGTAAGTGATGGCT 59 80780664 80782242 CTTGAAGACCTCAAATTCTGGA 58 NA Rattus norvegicus 81 Pnrc1 ENSRNOG00000007793 ENSRNOT00000010271 3 1 1 104 5 48503991 48504009 CCCTGCTATACAGACAGCC 60 48502478 48502497 GTATACCATGCACAAGCTGG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100361644 ENSRNOG00000029988 ENSRNOT00000046772 3 1 1 61 2 23260737 23260760 CACTCAAGTTTATCAAGAAGAGGG 60 23260699 23260718 CTCCTCCCTCTTTCTCTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007703.1 ENSRNOG00000059441 ENSRNOT00000078413 2 1 1 83 2 25007286 25011340 CTTCTGGGATAGACTGGGC 59 25011387 25011405 TACGCTGGAGCAATAGTGG 60 NA Rattus norvegicus 81 Plekhg1 ENSRNOG00000016011 ENSRNOT00000021471 1 1 1 80 1 40472811 40485166 TTGTGTCCAAGAGTGAAGAG 58 40489379 40489397 ATTCAGTTAGCACAGCCAC 58 NA Rattus norvegicus 81 Zfp763 ENSRNOG00000057416 ENSRNOT00000081512 1 1 1 86 7 15300095 15301021 AATCTGCGAACTCAGACGA 59 15300027 15300045 ATATCCTGGAATCCGGTGG 59 NA Rattus norvegicus 81 Baat ENSRNOG00000007395 ENSRNOT00000009777 3 1 1 80 5 64769233 64771242 CTGAGACATCCTAAGGTCCT 58 64769172 64769192 AGCCATAGAAAGTCCAATCTC 58 NA Rattus norvegicus 81 AABR07037570.1 ENSRNOG00000024298 ENSRNOT00000030377 2 1 1 60 X 24117788 24120413 AAGATTTGCAGGAGTGAAGGA 60 24117748 24117769 TAATAGACTGCAAAGGAAGCCA 60 NA DesignNoJunction Rattus norvegicus 81 Pou2af1 ENSRNOG00000011500 ENSRNOT00000066848 1 1 1 84 8 55604077 55623349 AATCCACAGCTTCAGAGCA 59 55623397 55623415 CTCAGTAGCTCCTTCACCG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07052807.1 ENSRNOG00000047074 ENSRNOT00000007835 3 1 1 83 3 76314617 76314641 GGGATCATTCTCCTACTATATTGTG 59 76314557 76314581 GATCATGACTGTATAAAGAGCGAC 60 NA Rattus norvegicus 81 Nup107 ENSRNOG00000006541 ENSRNOT00000009203 1 1 1 80 7 60805420 60806224 AACGTGAATGGAGGGACAG 60 60805358 60805380 CATTCTCCAGCAACTAATCTTCC 60 NA Rattus norvegicus 81 Nup107 ENSRNOG00000006541 ENSRNOT00000009203 3 1 1 80 7 60797076 60797094 TTTGGAGGGTGTTACGGAG 59 60795494 60797035 ATAGTCGCAACATCCAAATCTG 59 NA Rattus norvegicus 81 Scn3a ENSRNOG00000005007 ENSRNOT00000006646,ENSRNOT00000081401 3 2 2 80 3 51555364 51555384 GTGGCCTATGGATTTCAAACC 60 51545962 51555325 GCTAACCAAAGAAACATCAACG 59 NA Rattus norvegicus 81 Cst12 ENSRNOG00000004946 ENSRNOT00000006608 1 1 1 60 3 143122554 143122575 CATTGACAATTGTCCATTGCAG 59 143122596 143123367 AATGTAAGTGCAGCGTACC 58 NA DesignNoJunction Rattus norvegicus 81 Tfcp2l1 ENSRNOG00000002414 ENSRNOT00000003280 1 1 1 80 13 34640276 34641643 CCGCATCTTAGACATTGATATTCC 60 34641681 34641700 TCTACAGCATTCAGTTGGGT 59 NA Rattus norvegicus 81 Olr710 ENSRNOG00000059642 ENSRNOT00000081552 3 1 1 60 3 78544950 78544970 CCAATGTACTTCTTCCTTGCT 58 78544910 78544930 AGATGGCAGTGGAATAAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Oser1 ENSRNOG00000008297 ENSRNOT00000011610 1 1 1 80 3 159795100 159795121 TCAGAACAACAGTAGATGACAC 58 159785388 159795060 AAGACTTCCTTGTAGACCCA 58 NA Rattus norvegicus 81 Oser1 ENSRNOG00000008297 ENSRNOT00000011610 3 1 1 80 3 159785395 159795066 TTGGCATGGGTCTACAAGG 60 159785333 159785354 TGAAGAACAGGAGACTTAGAGC 60 NA Rattus norvegicus 81 Sctr ENSRNOG00000049766 ENSRNOT00000072088 1 1 1 80 13 36082766 36083941 GAAACAAACCATTATAAGCGCC 59 36083982 36084000 GGCGAAGACAATGTAGTGG 59 NA Rattus norvegicus 81 Mtrr ENSRNOG00000017826 ENSRNOT00000061790,ENSRNOT00000024041 2 2 2 80 1 37769417 37769436 TGGTTGCTCCATTTCTTCAG 59 37769477 37770331 AGATAAGTATCTCAGGAGCCA 58 NA Rattus norvegicus 81 LOC684270 ENSRNOG00000050348 ENSRNOT00000071971 1 1 1 80 1 72495090 72495109 CCAGCGAATCACTCATTCTG 59 72492000 72495053 GCTCCTTAATGATCTTCTGAATCTC 60 NA Rattus norvegicus 81 Ccdc93 ENSRNOG00000002514 ENSRNOT00000003435 3 1 1 80 13 37404005 37407323 TTCGACAAGGTAGTAGGAGG 58 37407364 37407384 TTCCTGAAAGAGCAAATCCAC 59 NA Rattus norvegicus 81 Stk3 ENSRNOG00000011278 ENSRNOT00000065722 2 1 1 80 7 73748138 73748157 TTGTGAAGAAGTGCTTGGTG 59 73731058 73748098 CATTCTTGATGAAAGGATGCTG 58 NA Rattus norvegicus 81 Casp3 ENSRNOG00000010475 ENSRNOT00000014095 1 1 1 80 16 48848307 48848987 AACTCTTCATCATTCAGGCCT 60 48848247 48848267 CCATATCATCGTCAGTTCCAC 59 NA Rattus norvegicus 81 Rgs12 ENSRNOG00000030568 ENSRNOT00000040215,ENSRNOT00000045068,ENSRNOT00000081570 2 3 3 87 14 80985660 80987122 AGGGAAAGTGTCCACAGAG 59 80985591 80985609 CATAGCCGAGTGGTTTCTG 58 NA Rattus norvegicus 81 Kcnh7 ENSRNOG00000007528 ENSRNOT00000085246,ENSRNOT00000009920 2 2 2 80 3 48705847 48706524 AAGTGCAAAGTCCCAATCC 58 48705785 48705805 TCGCTTTCAAAGGACAATCTC 59 NA Rattus norvegicus 81 Neurog2 ENSRNOG00000010972 ENSRNOT00000014570 2 1 1 76 2 231963200 231963218 CACTTTATCACCCGCTAGC 58 231963258 231963276 GTGCATAACGGTGCTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc17a7 ENSRNOG00000020650 ENSRNOT00000028064,ENSRNOT00000064184 1 2 2 83 1 101170254 101170272 ATACTCACACTCCAAGGGC 59 101170317 101170700 ACGTTAAACCCAGAGATAGCA 59 NA Rattus norvegicus 81 Cckar ENSRNOG00000043124 ENSRNOT00000065366 1 1 1 80 14 59618284 59619239 AATCTGCTAAAGAGAAGAAGCC 59 59619279 59619298 GGGACTTCTGCAAGTAACAG 59 NA Rattus norvegicus 81 Cckar ENSRNOG00000043124 ENSRNOT00000065366 3 1 1 98 14 59616118 59618178 CAGTCCTGGCAAACATTCC 59 59618239 59618258 TCCTTGGTAGAGTTCCAGAG 58 NA Rattus norvegicus 81 Pik3r1 ENSRNOG00000018903 ENSRNOT00000025687,ENSRNOT00000075057 1 2 2 80 2 31750501 31750521 GTCCTTAGCTCAGTACAATCC 58 31750223 31750460 TTGACAACTTGATCCTGCTG 59 NA Rattus norvegicus 81 Olr390 ENSRNOG00000017664 ENSRNOT00000023742 1 1 1 60 2 199529074 199529094 AGCCAACTTCAACTATGACAG 58 199529034 199529053 CACCAATATGTCCATGTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim43a ENSRNOG00000010699 ENSRNOT00000044521 1 1 1 80 8 96397460 96397480 GAGCTTATGACAATGTCCCAG 59 96398610 96399304 CACTAACTCACATCTTCTAAACAGG 60 NA Rattus norvegicus 81 Foxi2 ENSRNOG00000018917 ENSRNOT00000025569 3 1 1 62 1 207655049 207655705 GAGATGAGAACGACCCAGG 60 207655730 207655749 ACATCTTCTCACAGTTTGGG 58 NA DesignNoJunction Rattus norvegicus 81 Gjc1 ENSRNOG00000048838 ENSRNOT00000073372 2 1 1 81 10 90782877 90784292 CTGGTTAACAGGGCAAACC 59 90782814 90782834 CGAATGGTTGTGTATCTCCTC 59 NA InUTR Rattus norvegicus 81 Unc50 ENSRNOG00000018128 ENSRNOT00000024582 3 1 1 81 9 44031335 44031354 ACCTGAATGCTTTCTATCCG 58 44031395 44031491 GTGTCTGTGAGAATAACATGGT 59 NA Rattus norvegicus 81 RGD1305645 ENSRNOG00000023576 ENSRNOT00000036990 1 1 1 81 9 50533248 50541649 TCAGAAACGAGAAGGACCTG 60 50541693 50541711 CAGGCCACCTAGGAATTCC 60 NA Rattus norvegicus 81 RGD1305645 ENSRNOG00000023576 ENSRNOT00000036990 2 1 1 83 9 50533246 50541648 CTTCAGAAACGAGAAGGACCT 60 50541693 50541711 CAGGCCACCTAGGAATTCC 60 NA Rattus norvegicus 81 Eya3 ENSRNOG00000010396 ENSRNOT00000082945,ENSRNOT00000056170 3 2 2 80 5 150884187 150884207 AAACATGACTGTCAAGAACCG 59 150884246 150889403 AGAAATACCCGTTCTAATTCGC 59 NA Rattus norvegicus 81 Pcgf5 ENSRNOG00000018532 ENSRNOT00000025020,ENSRNOT00000092151 1 2 2 80 1 255063271 255063290 GACCCACAAATCGCTATCTG 59 255063331 255067143 CTTCATGAGACCCTTTACCAC 59 NA Rattus norvegicus 81 Pcgf5 ENSRNOG00000018532 ENSRNOT00000025020,ENSRNOT00000092151 2 2 2 80 1 255063272 255063290 ACCCACAAATCGCTATCTG 58 255063332 255067144 TCTTCATGAGACCCTTTACCA 59 NA Rattus norvegicus 81 Polr1b ENSRNOG00000018349 ENSRNOT00000024882 1 1 1 80 3 121640813 121640832 GAACGCTTCAGAGTAAAGCT 58 121640874 121641479 GATGCACTGGTTAAACAGGA 58 NA Rattus norvegicus 81 Cntd1 ENSRNOG00000051150 ENSRNOT00000076865 1 1 1 80 10 89200196 89200214 CAGCAGAATGAGCAAGCAG 60 89200256 89204894 AAAGACAAACTCAACGATCCG 59 NA Rattus norvegicus 81 Tsks ENSRNOG00000020443 ENSRNOT00000049584 1 1 1 80 1 100947075 100948053 CAGTCAATTGAAGGAGAACTG 57 100948095 100948113 TTCTGCTTCAGGACATTGG 58 NA Rattus norvegicus 81 Fdxacb1 ENSRNOG00000010743 ENSRNOT00000065879 3 1 1 80 8 55199249 55199267 CAGAGTCAGACTGGAGGAC 59 55199309 55200021 TCATTGATGGTTCTGTTCAGC 59 NA Rattus norvegicus 81 Doc2g ENSRNOG00000018029 ENSRNOT00000024353 2 1 1 129 1 219251433 219251525 AAGACCCTGAGGCTATGTG 59 219251617 219251636 GACAGATGTCAAAGCTCCTG 59 NA Rattus norvegicus 81 Cct6a-ps2 ENSRNOG00000027660 ENSRNOT00000031735 1 1 1 60 10 87655681 87655699 CAACACCCAATAGCCTCCT 59 87655723 87655741 CGCCACTTATGTCATCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cct6a-ps2 ENSRNOG00000027660 ENSRNOT00000031735 2 1 1 60 10 87656480 87656499 TCCTTTGATGACCTGAATCC 57 87656519 87656540 GTGTATACTCATAGACAAGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akap12 ENSRNOG00000019549 ENSRNOT00000060767 2 1 3 90 1 40861620 40899160 GATGAGGATGTTGGACAGC 58 40899213 40899232 TATCTTCAACAGCTGTGGAG 57 NA Rattus norvegicus 81 Tnfrsf11a ENSRNOG00000015615 ENSRNOT00000021129 3 1 1 80 13 25804233 25805124 CGAACCAGGAAAGTACCTG 58 25805168 25805186 AAGTATTCATCTGGGCCAC 57 NA Rattus norvegicus 81 Myo5c ENSRNOG00000008356 ENSRNOT00000011768 2 1 1 80 8 82207323 82207344 AGAACTCTTTATTCGAGAAGCC 58 82207385 82208317 ACTGGTACTCCACCTTGTC 59 NA Rattus norvegicus 81 G6pc ENSRNOG00000051171 ENSRNOT00000028033,ENSRNOT00000076390,ENSRNOT00000085831 3 3 3 61 10 89286249 89286267 ATCAATCTCCTCTGGGTGG 59 89286290 89288267 AGAATCCACTTAAAGACGAGG 58 NA DesignNoJunction Rattus norvegicus 81 Olr886 ENSRNOG00000029097 ENSRNOT00000051699 3 1 1 60 7 5818175 5818195 CAGCACTGATCATCATTCTCC 59 5818135 5818154 GATTCACAGAATTCCAGGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adra2a ENSRNOG00000047545 ENSRNOT00000071541 2 1 1 60 1 274766907 274766926 AAGTGGTATGTCATCTCGTC 57 274766949 274766967 GGATCATGATGAGGCAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankar ENSRNOG00000003991 ENSRNOT00000005313 3 1 1 80 9 53013949 53013968 GGACATTGATCAAGATGGGA 57 53014008 53022330 GTAATATCAACCAAACCTGCTG 58 NA Rattus norvegicus 81 Slc5a11 ENSRNOG00000013407 ENSRNOT00000090172,ENSRNOT00000065342 1 2 2 80 1 193214427 193218810 CTCTTTCCAGATCAAGTAGCC 58 193218852 193218870 GATGTCTGAACAGCCAGAG 58 NA Rattus norvegicus 81 Mars ENSRNOG00000025459 ENSRNOT00000035486 1 1 1 80 7 70588238 70588504 CCTCATCGCTACAGAATACCT 59 70588178 70588196 GCCATGTCTCCAAACACTC 59 NA Rattus norvegicus 81 Lrrc71 ENSRNOG00000014937 ENSRNOT00000020147 1 1 1 80 2 187111144 187113442 AAATCCCGAGGAGTACCAG 59 187111082 187111100 AAGTCCGTGTATCCTGACC 59 NA Rattus norvegicus 81 Hsd17b1 ENSRNOG00000019830 ENSRNOT00000026878 1 1 1 80 10 88987624 88987643 GGTTGCTCTTCTGGAATTGG 59 88987683 88987782 TGTGGCATAAACTTTGAAGCTC 60 NA Rattus norvegicus 81 Bcl6b ENSRNOG00000059956 ENSRNOT00000090338 2 1 1 80 10 56837982 56838289 TCTTCAGAGCAGACTATCCC 58 56837921 56837942 GTGAAGAGGTAGGAGTTATTCG 58 NA Rattus norvegicus 81 Bcl6b ENSRNOG00000059956 ENSRNOT00000090338 3 1 1 80 10 56837978 56838285 CAGAGCAGACTATCCCTAGC 59 56837917 56837935 GGGTGTGAAGAGGTAGGAG 59 NA Rattus norvegicus 81 Mir6330 ENSRNOG00000050956 ENSRNOT00000072980 3 1 1 60 8 113718180 113718203 GGTCATTTCAGTACATGTACACAG 60 113718143 113718162 GTTACACATGTGTTGACCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gstm7 ENSRNOG00000018937 ENSRNOT00000081501,ENSRNOT00000025689 3 2 3 80 2 210723634 210723652 CAACTGCCTGGAATGATGC 60 210723487 210723591 CACAAAGGTGATCTTGTCCC 59 NA Rattus norvegicus 81 Olr1467 ENSRNOG00000052661 ENSRNOT00000045573 2 1 2 83 10 59923382 59923401 TGTTTCTCAGCAACTTGTCC 59 59923447 59934372 CTTGGCTCTGCATGTTCTG 59 NA Rattus norvegicus 81 AABR07070669.1 ENSRNOG00000056409 ENSRNOT00000082411 2 1 1 80 8 79419440 79419460 ACACATCCTCCTTCTCATCTG 59 79420547 79420565 GGCGGATTCCTTTGATGAG 59 NA DesignNoJunction Rattus norvegicus 81 Arhgap33 ENSRNOG00000024677 ENSRNOT00000034001 3 1 1 80 1 88983916 88983935 GCAAGACACAGTGCTAACAC 60 88982906 88983873 CTCCATAGACCGTAGCAGG 59 NA Rattus norvegicus 81 Zic4 ENSRNOG00000014871 ENSRNOT00000019938 3 1 2 113 8 98752148 98756683 ACATACAGGCGAGAAACCT 59 98756759 98756778 ATATAAGGCTTGTCGCTCGT 59 NA Rattus norvegicus 81 Skp1 ENSRNOG00000005828 ENSRNOT00000007676,ENSRNOT00000085463 1 2 2 82 10 37606667 37606686 GATATTCCTGTTTGGGACCA 57 37606730 37607837 TCTAAGTAGTTTGCAGCCAG 58 NA Rattus norvegicus 81 Has2 ENSRNOG00000004854 ENSRNOT00000006517 3 1 1 168 7 96442344 96453041 CGTGGATTATGTACAGGTGTG 59 96440933 96440952 GTATCTCACACTGCTGAGGA 59 NA Rattus norvegicus 81 AC110474.1 ENSRNOG00000036665 ENSRNOT00000054921 3 1 1 60 10 110438297 110438316 GCACAGGTAAAGATCTGGAG 58 110438339 110438357 GATCAGGCTCAATTGGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tcf7 ENSRNOG00000005872 ENSRNOT00000008022 3 1 1 84 10 37625306 37625325 CAACTTTCTCCACTCTACGA 57 37624229 37625259 TGTGAACTCCTTGCTTCTG 58 NA Rattus norvegicus 81 Shroom2 ENSRNOG00000024322 ENSRNOT00000059431,ENSRNOT00000050819 2 2 2 80 X 23520027 23522016 GATCACTATTCACAGGAAGTGC 59 23519968 23519989 ACAAAGAAGTGCTTCTTTCTGG 60 NA Rattus norvegicus 81 Inpp4a ENSRNOG00000017660 ENSRNOT00000024330 1 1 1 80 9 43962829 43962850 CTCTCATCAATCAGATGACCCA 60 43962890 43963168 CCAGCAAGTACATTGTTCCC 59 NA Rattus norvegicus 81 Prkca ENSRNOG00000003491 ENSRNOT00000055073,ENSRNOT00000004699 2 2 2 80 10 96237163 96264772 GCAGAAGTTCGAGAAAGCC 59 96237101 96237120 TTAGATGGCTGCTTCCTGTC 60 NA Rattus norvegicus 81 Hnmt ENSRNOG00000005223 ENSRNOT00000007471 1 1 1 80 3 909653 909671 GCCACCCTGAAATTCTTCC 59 905788 909609 CCAGCCACTAGTTCCTGAC 60 NA Rattus norvegicus 81 LOC100361854 ENSRNOG00000029512 ENSRNOT00000051134 1 1 1 60 X 115495839 115495858 TGCTTCCCAAGCTCTATGTC 60 115495798 115495816 ACCTTGCTATGAATGGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Shisa5 ENSRNOG00000020667 ENSRNOT00000077236 2 1 2 72 8 117783318 117783336 ATACTGCTGCTCTGACGTG 60 117783371 117789847 AAATCTGGACTCTGGCTCAG 60 NA DesignNoJunction Rattus norvegicus 81 Prr14l ENSRNOG00000048891 ENSRNOT00000072368 1 1 1 80 14 83260153 83260171 ACCATACCACATGTGCCTC 60 83260215 83261519 AAACACAGGCTCTAGCCTC 59 NA Rattus norvegicus 81 Ccr10 ENSRNOG00000020275 ENSRNOT00000027458 2 1 1 139 10 89088243 89088957 CCACAGAACAGGTCTCCTG 60 89088122 89088140 CACCATCAGGGAGACACTG 60 NA Rattus norvegicus 81 Rab21 ENSRNOG00000003923 ENSRNOT00000005258 3 1 1 80 7 58273668 58274617 CTTGCTATATGGGATACAGCC 58 58273608 58273628 AATAGCTCCATTCGAATCTCG 58 NA Rattus norvegicus 81 Itga2b ENSRNOG00000022071 ENSRNOT00000055179,ENSRNOT00000036112 1 2 2 80 10 90406411 90410230 GACGGCTATAATGATGTTGCT 59 90406351 90406371 CTGACCAAGGAATATCAGCAC 59 NA Rattus norvegicus 81 Tom1l1 ENSRNOG00000002474 ENSRNOT00000003369 3 1 1 80 10 78191031 78191049 ATGAAGACGTGACAGTGGA 59 78187599 78190990 TTCGAGTAAACCTCTCGTATCC 60 NA Rattus norvegicus 81 Noc4l ENSRNOG00000037478 ENSRNOT00000056725 3 1 1 80 12 52076296 52076314 TCATCAACCAGGCACTCTC 59 52076355 52076459 CCTGCTCAAAGATCTCATATGC 59 NA Rattus norvegicus 81 LOC100910577 ENSRNOG00000033583 ENSRNOT00000042498 2 1 1 102 7 9898367 9898897 CATGGAAGGTATTTCAACTGTC 58 9898957 9898978 CACATCTTCTAATTGTTCTGGG 57 NA Rattus norvegicus 81 RT1-CE2 ENSRNOG00000050183 ENSRNOT00000049310 1 1 3 181 20 4789801 4789946 CTCACCTTGAGATGGGAGG 59 4772247 4789656 TAGTCTCCTTTCCCACCCT 59 NA Rattus norvegicus 81 Tnpo1 ENSRNOG00000014999 ENSRNOT00000020543 1 1 1 80 2 29082023 29082042 TGAATTCTGGCTGACTTTGG 59 29081465 29081981 AACACGGGAATCAACTTAGG 58 NA Rattus norvegicus 81 Ncoa5 ENSRNOG00000017824 ENSRNOT00000024214 2 1 1 80 3 161469568 161474547 ACAGACGAAAGATTATGCGG 59 161469507 161469526 GTGTTGAGGAAGATCAGGTC 58 NA Rattus norvegicus 81 Fanci ENSRNOG00000016689 ENSRNOT00000050759 1 1 1 80 1 141137161 141137180 TTTCTTCAGACTCTCGTCCC 59 141137217 141141584 CCAACTATGAACACTATTCTTCACC 60 NA Rattus norvegicus 81 Lif ENSRNOG00000007002 ENSRNOT00000009313 1 1 1 82 14 84498194 84498214 TCATGAACCAGATCAAGAGTC 58 84498257 84498848 CCCTTGAGCTGTGTAATAGG 58 NA Rattus norvegicus 81 Wdr75 ENSRNOG00000003825 ENSRNOT00000083864,ENSRNOT00000050275 1 2 2 80 9 52716792 52717104 CAATTACTGAGCTTCTTCACAC 58 52717143 52717163 GCAGTGAGTTTACAAACAGAG 58 NA Rattus norvegicus 81 Mapk8ip1 ENSRNOG00000058478 ENSRNOT00000079746 3 1 1 80 3 81296548 81296567 CTGTGTCCTTGAAATCAGCG 60 81296313 81296507 CATTTATTTCCCTTGGCCTCC 59 NA Rattus norvegicus 81 Mon2 ENSRNOG00000004185 ENSRNOT00000005654,ENSRNOT00000077878 3 2 3 64 7 66717511 66717529 GCCTTGTCACTAGAATGCA 58 66727008 66727027 ATTATTCCCGATTCAGCAGC 59 NA DesignNoJunction Rattus norvegicus 81 Zhx1 ENSRNOG00000006412 ENSRNOT00000008454 1 1 1 81 7 97937671 97937691 CCAAGTACCTCATTTGAAGGG 59 97923391 97937628 CACAACTCCAATCACCTGC 59 NA InUTR Rattus norvegicus 81 Melk ENSRNOG00000013598 ENSRNOT00000066277 2 1 1 80 5 59812248 59812266 CTCTTGAACCATCCCTGGA 59 59812308 59819270 ATCAAGGTGAGTCAAAGAAGC 59 NA Rattus norvegicus 81 Cmklr1 ENSRNOG00000000704 ENSRNOT00000000893 2 1 1 85 12 48789340 48791123 TCTCCAAAGAGATGGAGTACG 59 48791170 48791188 GTCCACGATGTAGTCCGAG 60 NA InUTR Rattus norvegicus 81 Cmklr1 ENSRNOG00000000704 ENSRNOT00000000893 3 1 1 86 12 48789341 48791124 CTCCAAAGAGATGGAGTACGA 59 48791172 48791190 AAGTCCACGATGTAGTCCG 59 NA InUTR Rattus norvegicus 81 Hgfac ENSRNOG00000009572 ENSRNOT00000013257 2 1 1 80 14 80971498 80971516 GTACCCAGGACCATGTGTC 60 80971295 80971454 CAAAGCACTTCTCTGTGCC 60 NA Rattus norvegicus 81 LOC689959 ENSRNOG00000051792 ENSRNOT00000080736 1 1 1 95 8 55167378 55167398 TCCAGAAGAGAAACAAGACAG 58 55165821 55166410 TTTCATAGTCCTTCGTGCC 58 NA Rattus norvegicus 81 Gabbr2 ENSRNOG00000008431 ENSRNOT00000011573 2 1 1 80 5 62287317 62290147 GAATGAAGATCACAGAGCTGG 59 62287257 62287276 TGTATGTGGTCTTCTCTGGT 58 NA Rattus norvegicus 81 Utrn ENSRNOG00000011058 ENSRNOT00000086574,ENSRNOT00000016273 3 2 2 80 1 6837907 6837925 GTCCTCAACTTCACCACCA 60 6835484 6837865 GCTGAAGAGATCTGGTTTGTG 59 NA Rattus norvegicus 81 Unc45a ENSRNOG00000012357 ENSRNOT00000017407 1 1 1 80 1 142121011 142121029 GGACTGCAGAACTTTGAGG 59 142120043 142120970 CTTCAGGATCTTCTGTCTAAGC 58 NA Rattus norvegicus 81 Lrrc39 ENSRNOG00000015117 ENSRNOT00000020297 3 1 1 80 2 219612520 219612538 ATGGAGAGGAAGAACAGGA 57 219612582 219615812 CTTGGTCTTCTGTTCTCCG 58 NA Rattus norvegicus 81 Pold2 ENSRNOG00000014098 ENSRNOT00000084633,ENSRNOT00000019288 1 2 2 80 14 86112958 86113222 TCAATAAGGCCAAATACCTCAC 59 86112899 86112917 GCAGTAGGATCTCGTCCAG 59 NA Rattus norvegicus 81 Wscd2 ENSRNOG00000053045 ENSRNOT00000080783 3 1 1 84 12 48817693 48828541 GAAAGGCAAAGAATGGCCC 60 48817627 48817645 CTTGCCAAACTTGAGCCAG 60 NA Rattus norvegicus 81 LOC684376 ENSRNOG00000047871 ENSRNOT00000070789 3 1 1 60 1 168082389 168082407 TTTGTGGCTATCCGAGACC 60 168082347 168082368 TTCCAATAACACCATGAGTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sytl3 ENSRNOG00000018321 ENSRNOT00000024967 3 1 1 80 1 47272172 47272193 CCTTAGAGATCTGCATCAAGAC 59 47272233 47277538 TCTTGACATACGGATTGCAC 58 NA Rattus norvegicus 81 LOC100360856 ENSRNOG00000048686 ENSRNOT00000092165 2 1 2 170 9 8399672 8400358 ACAGTTCCTACCGCATCAG 60 8400492 8400510 AGATGTTCATTCCGGCCTC 60 NA InUTR Rattus norvegicus 81 Rdx ENSRNOG00000012237 ENSRNOT00000034924,ENSRNOT00000085316 2 2 2 80 8 56592803 56592822 AAACTGACCAAAGAGCAGTG 59 56592861 56593507 CATTGAATCTTCCCTTAGCATCC 60 NA Rattus norvegicus 81 LOC100359574 ENSRNOG00000025154 ENSRNOT00000030108 1 1 1 60 1 281864214 281864232 CATCGCCTGTTCTGTAACC 59 281864255 281864274 AATGGATTGGATCTGCTGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Azi2 ENSRNOG00000010096 ENSRNOT00000013450,ENSRNOT00000092142 2 2 2 81 8 126421644 126422251 CAGACTGGAGAAGATAAGTAAAGAC 59 126422287 126422308 GAGCTCTACTTCTTTACACTGC 59 NA Rattus norvegicus 81 Cdc14a ENSRNOG00000014515 ENSRNOT00000064735 3 1 1 80 2 219323201 219323881 GCAAACATAAGAAGCTTCTCC 58 219323141 219323160 CTCAGTTTCTTCTGTCCCAG 58 NA Rattus norvegicus 81 Hspa1b ENSRNOG00000050647 ENSRNOT00000081924 1 1 1 60 20 4878096 4878114 CAAGGCCAACAAGATCACC 59 4878054 4878072 CTCGATCTCCTCCTTGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr89 ENSRNOG00000050189 ENSRNOT00000072397 1 1 1 60 1 168411840 168411858 CATTGCCATCTGTGATCCT 58 168411881 168411900 CCGACCTAGAATTGAAGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr88 ENSRNOG00000060826 ENSRNOT00000079028 1 1 1 60 1 168404255 168404276 TTTATCCTCATATCGTATGCCC 58 168404296 168404315 CCTCCTTCTGTTGAAGACGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r46 ENSRNOG00000032817 ENSRNOT00000048152 2 1 1 60 1 67065488 67065507 CTACAGTAATCGAGTGTCCC 57 67065447 67065466 GAAACAACTCAAGAGGCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Notch4 ENSRNOG00000000442 ENSRNOT00000000513 3 1 1 81 20 4343065 4343467 GATGAGCCAAGGTGTAGAG 57 4343512 4343530 GCGACAGAAATAGGAGGAG 57 NA Rattus norvegicus 81 Klhl25 ENSRNOG00000010959 ENSRNOT00000014553 2 1 1 72 1 137341213 137358983 CGGTGGATACACAATGTCAG 59 137341160 137341178 GATGTTCATGGAGCCTGTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Extl2 ENSRNOG00000014323 ENSRNOT00000091001,ENSRNOT00000019190 2 2 2 81 2 218966451 218966470 CCTCTTCAAACCACAAACGG 60 218966514 218967502 CATTAACACCGCGTTGGTC 60 NA Rattus norvegicus 81 Mybphl ENSRNOG00000037082 ENSRNOT00000027099 2 1 1 80 2 211168220 211168238 CAGGATGCTACCAACTCTG 58 211168282 211168488 CTGGCTTCTCAATCACCAG 58 NA Rattus norvegicus 81 Agpat1 ENSRNOG00000000437 ENSRNOT00000088079 1 1 1 82 20 4375367 4375385 GGTTGGATCCTCTTCCTGG 60 4375429 4375650 CGCAAGATCTTCATGTTCTCG 60 NA Rattus norvegicus 81 Inafm1 ENSRNOG00000049661 ENSRNOT00000071098 1 1 1 237 1 78212247 78212265 GTCTGATAGGGCGTGACTC 60 78212028 78212046 TATACCGCAAGCAACACAG 58 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Adamts6 ENSRNOG00000012655 ENSRNOT00000016997,ENSRNOT00000072577 2 2 2 80 2 34559328 34559347 TGTGACCCTGACAGTAAACC 60 34559388 34568093 GTCACCAATGAACCATTCAGG 60 NA Rattus norvegicus 81 Tti2 ENSRNOG00000023494 ENSRNOT00000032467 2 1 1 80 16 64741078 64741169 GCCTTTGTGAAGAAGTTGGG 60 64741017 64741035 AACCTCCAGGTAACCAAGG 59 NA Rattus norvegicus 81 Gpsm3 ENSRNOG00000000441 ENSRNOT00000000510 3 1 1 96 20 4356284 4356532 ATACTCAGTCACCAGTGCC 59 4356592 4356610 GAACTCTGAGCAGCAACTC 59 NA Rattus norvegicus 81 Prrt1 ENSRNOG00000000433 ENSRNOT00000091188 3 1 1 104 20 4395020 4395038 ATCATCGCCATCTTCAAGG 58 4395246 4395265 GATGAAGGAGAAATTCCGGG 59 NA DesignNoJunction Rattus norvegicus 81 LOC102550797 ENSRNOG00000047861 ENSRNOT00000075593 2 1 1 80 8 40879643 40880377 CAGCAACATCTGGTCTCAG 58 40879581 40879600 CAACCTATTCTTCAGGAGGC 58 NA Rattus norvegicus 81 Arhgap29 ENSRNOG00000012563 ENSRNOT00000066486,ENSRNOT00000017076 2 2 2 80 2 225608211 225608229 AAACCGCTCTTATCACCAG 58 225608270 225608799 ACGGATATCTTCCTTTGAAGAG 58 NA Rattus norvegicus 81 Rpp25 ENSRNOG00000018812 ENSRNOT00000025410 1 1 1 62 8 62284044 62284062 AATCTGCAGCTGGAGAAGG 60 62284088 62284106 CCTCATTCTCAGCCTCTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc25a54 ENSRNOG00000027522 ENSRNOT00000038315 1 1 1 80 2 211884508 211884529 GAAGTACCTTCAAGACCATGAG 59 211884570 211900962 GCATCTATTACGCCATCGG 59 NA Rattus norvegicus 81 Myoz2 ENSRNOG00000014815 ENSRNOT00000080215,ENSRNOT00000065361 2 2 2 80 2 227188351 227190468 TTGCACCAGGATATTCTGGA 59 227188290 227188311 ACTGGTAGTACTTAGGAACAGC 59 NA Rattus norvegicus 81 Bend3 ENSRNOG00000046505 ENSRNOT00000071494 2 1 1 132 20 48249913 48249931 CTCCACAATTCCAGCAAGC 60 48265298 48265316 AGGGTGAACTGTTCTCACG 60 NA DesignNoJunction Rattus norvegicus 81 Tnks ENSRNOG00000011625 ENSRNOT00000015813 1 1 1 80 16 61038889 61040249 TGGAAACTGTGAAGCAACTG 59 61040291 61040310 AGTGTAAGGGAGTGGAATGG 59 NA Rattus norvegicus 81 RGD1564138 ENSRNOG00000037172 ENSRNOT00000050117 2 1 1 60 8 119214843 119214864 CAAACTTGGGAAGAAGATTCGA 59 119214883 119214903 CTTTGGTTGGCAGAATCTACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nek5 ENSRNOG00000048769 ENSRNOT00000058091 3 1 1 80 16 74828431 74828449 AAAGCCATCGAGAGGAGAC 59 74828492 74829547 GCTGCTTCCAATATTCCTGG 59 NA Rattus norvegicus 81 Timm8a1 ENSRNOG00000043480 ENSRNOT00000067683 3 1 1 60 8 115512186 115512207 CCAGTTCATCTTAAATCGACTG 57 115512228 115512246 TCAGTCTGAGAAGACAGGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564370 ENSRNOG00000033652 ENSRNOT00000043491 1 1 1 60 20 42842955 42842973 CCTGGGTCCTAAGTCTGTG 59 42842996 42843015 GAGTTCTTTAGCCTTTGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lman1l ENSRNOG00000019355 ENSRNOT00000026192 1 1 1 80 8 62388701 62389400 CAAGAGATGAGGGAAGCAG 58 62388639 62388658 AAAGTGATGTTTAGTGCCCA 58 NA Rattus norvegicus 81 Rcc2 ENSRNOG00000006327 ENSRNOT00000008940 3 1 1 82 5 159225490 159225875 GCGTTAACAGATACTGGCTC 59 159225920 159225938 ACAGCATCTGTCTGGTTCC 60 NA Rattus norvegicus 81 Cyp1a2 ENSRNOG00000016173 ENSRNOT00000021653 2 1 1 80 8 62455694 62455712 TACAAAGACAACGGTGGTC 58 62454690 62455650 TGTTTCAAATCCAGCTCCA 57 NA Rattus norvegicus 81 Pard6b ENSRNOG00000010883 ENSRNOT00000014568 2 1 1 84 3 164828334 164828354 ATGATGACAACTACCACAAGG 58 164828400 164840642 CTGTAGTCGGCTTCTTCCT 59 NA Rattus norvegicus 81 RT1-CE10 ENSRNOG00000050210 ENSRNOT00000079494,ENSRNOT00000048858,ENSRNOT00000084461 2 3 3 84 20 155236 155348 CAGAGATGGGAGCCTTCTC 59 155170 155188 CAAAGACAGCCAAAGGTCC 59 NA Rattus norvegicus 81 Tpte2 ENSRNOG00000024837 ENSRNOT00000034670 2 1 1 80 16 74591166 74593229 TAAACGCAAAGGCAAGTCTG 60 74591105 74591128 TCTCTACTCCTTGAAACTTAGAGC 60 NA Rattus norvegicus 81 Gad1 ENSRNOG00000000007 ENSRNOT00000000008,ENSRNOT00000084375,ENSRNOT00000087712,ENSRNOT00000087134 2 4 4 80 3 56871804 56872984 TGCTCAAGATCTGCTTCCA 59 56873026 56873046 TTGAGGAGTATGTCAACCACC 60 NA Rattus norvegicus 81 Olr1673 ENSRNOG00000047925 ENSRNOT00000051646 3 1 1 60 20 421606 421628 AGTAGTAACTCCTACACTGAACC 59 421568 421588 TCCCTTTACATCCTTGTTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc24a2 ENSRNOG00000008169 ENSRNOT00000010827,ENSRNOT00000083373 2 2 2 80 5 105427808 105427827 TCCACAACAGTCTCATGAGG 60 105402760 105427767 ATGATCCAAGTTCTTCAGCGA 60 NA Rattus norvegicus 81 Eif4ebp1 ENSRNOG00000012582 ENSRNOT00000016885 3 1 1 164 16 68956855 68956873 TGATGGAGTGTCGGAACTC 59 68955317 68956727 ACTGTGACTCTTCACCACC 59 NA Rattus norvegicus 81 Alpl ENSRNOG00000013954 ENSRNOT00000019004,ENSRNOT00000078851 2 2 2 80 5 156094783 156097868 ACATCGATGTGATCATGGG 57 156094721 156094742 TCTCATCCAGTTCATATTCCAC 58 NA Rattus norvegicus 81 Focad ENSRNOG00000024402 ENSRNOT00000058387 2 1 1 80 5 106521844 106521865 AGATGGAGGACAGAATCTTCAG 59 106521905 106553509 AGATGTGGTACCTGAGAGGA 59 NA Rattus norvegicus 81 Zhx3 ENSRNOG00000027988 ENSRNOT00000032588 2 1 2 96 3 156775223 156775241 AGAACAGTGAAGCATGGGA 59 156765491 156775163 CAGTCTGTTTCGAGCTGAC 59 NA Rattus norvegicus 81 Rapgef4 ENSRNOG00000001516 ENSRNOT00000010630 3 1 1 80 3 58689760 58692947 AAAGGAATCACACTGTTTCGAC 60 58692985 58693006 CACTTTAACATCCAAAGACCCA 59 NA Rattus norvegicus 81 Tm2d1 ENSRNOG00000007527 ENSRNOT00000009897 1 1 1 80 5 116999733 117008366 TATTTCAATGCAGATCGTCGG 59 116999673 116999691 CTGAGTCTCGTGAGTCTGG 59 NA Rattus norvegicus 81 Ddhd2 ENSRNOG00000015501 ENSRNOT00000020832 1 1 1 80 16 71109284 71109302 ACAGGAGAAGCCCATTGAG 59 71109342 71118462 GTATCTTCAGATTCCCAGTAGCA 60 NA Rattus norvegicus 81 AABR07026233.1 ENSRNOG00000038490 ENSRNOT00000058668 2 1 1 89 16 68672122 68673432 ACGATACAATCTCCACAGGA 58 68672052 68672070 GTGTTCAGAGGAGATGTGC 58 NA Rattus norvegicus 81 Casp9 ENSRNOG00000012944 ENSRNOT00000017972,ENSRNOT00000088523,ENSRNOT00000080721,ENSRNOT00000085378 2 4 4 113 5 160355994 160358472 ATCGAGGATATTCAGCGGG 59 160358549 160358567 TAAGCAGGAGATGAAGCGA 59 NA Rattus norvegicus 81 Osbpl2 ENSRNOG00000057756 ENSRNOT00000087356 1 1 1 80 3 175513432 175516094 ATTCAGAAGCACAGGACAG 58 175516136 175516156 GCATTTCTTCAGGATACTCCA 58 NA Rattus norvegicus 81 Osbpl2 ENSRNOG00000057756 ENSRNOT00000087356 3 1 1 80 3 175527155 175527175 TGTGTACACAATGTCATCCTG 58 175527214 175527893 ATCTCCAGTTCTGTGATTTAGG 58 NA Rattus norvegicus 81 Src ENSRNOG00000009495 ENSRNOT00000080516,ENSRNOT00000012739 1 2 2 80 3 153592295 153592313 CTGCTGGACTTTCTCAAGG 58 153592357 153592902 TGAAGCAATCTGAGCAGAC 58 NA Rattus norvegicus 81 Smim19 ENSRNOG00000024930 ENSRNOT00000036506 3 1 1 87 16 74413067 74413085 AGATGCTGTCAGAACCCAG 59 74413134 74420166 TACTTTCTTGAAACGGGATGC 59 NA Rattus norvegicus 81 Pdha1l1 ENSRNOG00000014745 ENSRNOT00000019797 3 1 1 89 16 88347280 88347298 CATGAGGAAGATGCTTGCC 59 88347125 88347144 AAATTACGGGAAGCTACCAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ctsz ENSRNOG00000050697 ENSRNOT00000072069 3 1 1 80 3 172528787 172532545 CCAAGGACCAAGAATGTGAC 59 172528726 172528747 TATAATTCTGGATGGTGTGGCA 60 NA Rattus norvegicus 81 Tm2d2 ENSRNOG00000016559 ENSRNOT00000022425 1 1 1 80 16 71809180 71809609 TTTGCTCTTACCTACCCGAC 60 71809119 71809137 GTTCCTGGTATGCAGTTGC 59 NA Rattus norvegicus 81 Tm2d2 ENSRNOG00000016559 ENSRNOT00000022425 2 1 1 80 16 71809177 71809605 CTCTTACCTACCCGACGAG 59 71809115 71809133 CCAAGTTCCTGGTATGCAG 58 NA Rattus norvegicus 81 Sycp2 ENSRNOG00000061690 ENSRNOT00000079019,ENSRNOT00000078047 1 2 2 80 3 173896377 173896398 TCAACTTCAGGATCAGAATCAG 58 173894896 173896336 AGTCTCCTCCTTTGTTGGT 58 NA Rattus norvegicus 81 Sycp2 ENSRNOG00000061690 ENSRNOT00000079019,ENSRNOT00000078047 3 2 2 80 3 173920303 173920324 AACTTACAAACCCTCTAGAACC 58 173919020 173920265 TAGGTGTAGTGATCTCATCCTG 59 NA Rattus norvegicus 81 Ido2 ENSRNOG00000025365 ENSRNOT00000032116 3 1 1 81 16 72276274 72282101 AAATGCACGATTATGTAGACCC 59 72287462 72287480 ATGACTGGGTTGTCCTTCC 59 NA Rattus norvegicus 81 Proz ENSRNOG00000019700 ENSRNOT00000026666 2 1 1 80 16 81791372 81791390 TGACTTCCCAGCACATCAG 60 81788711 81791328 TTAATCTGACCTGCCACGG 60 NA Rattus norvegicus 81 Ikbkb ENSRNOG00000019073 ENSRNOT00000025851 1 1 1 80 16 74222759 74222874 GAAGCCAAGAGACCAAAGG 59 74222918 74222936 TTCTCGAAGCTCTGGATGG 59 NA Rattus norvegicus 81 Atp5hl1 ENSRNOG00000038744 ENSRNOT00000059185 2 1 1 60 16 51816662 51816682 AGTATGTCTGAGAAACCACCA 59 51816704 51816722 CCTTGCCTACATTGGTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC290876 ENSRNOG00000026740 ENSRNOT00000057803 2 1 1 86 16 81311696 81313708 CAAGGAGCTAGACTCCGAG 59 81310188 81310206 TTGTCATCCTCTAGGCTCG 59 NA Rattus norvegicus 81 RGD1308750 ENSRNOG00000048356 ENSRNOT00000073254 1 1 1 60 16 70069082 70069101 AAGTAAACCACAGATTGCGG 59 70069123 70069142 CAGCATCTTCCTCACATGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1308750 ENSRNOG00000048356 ENSRNOT00000073254 2 1 1 60 16 70070155 70070173 GCTTTGGTGTGAAGAACCT 58 70070197 70070215 GAAAGAACGATGGCTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il1rn ENSRNOG00000005871 ENSRNOT00000007949 2 1 1 80 3 1463320 1464865 CAAGCCTTCAGAATCTGGG 58 1464909 1464927 TCCTTGTAAGTACCCAGCA 58 NA Rattus norvegicus 81 L3mbtl1 ENSRNOG00000007044 ENSRNOT00000045677,ENSRNOT00000063906 2 2 2 80 3 159321932 159321950 GACCAATAGCACAGTCAGG 58 159321994 159322308 TTTATCCGGAACCTCATGC 58 NA Rattus norvegicus 81 Il36b ENSRNOG00000043323 ENSRNOT00000067207 3 1 1 80 3 1367408 1367427 GGGAATCAAAGGCAGAAGTC 59 1366497 1367368 ATGTCTACATCCTTAAGCTGCA 60 NA Rattus norvegicus 81 Wfdc15b ENSRNOG00000028779 ENSRNOT00000047560 2 1 1 80 3 160608168 160608186 TCCCTCTACTCACAGTGAC 58 160607964 160608126 GTTTGGATAAAGCCTTCTTCC 57 NA Rattus norvegicus 81 Jund ENSRNOG00000019568 ENSRNOT00000026470 2 1 1 62 16 20486271 20486289 AAGGCTGATCATCCAGTCC 59 20486227 20486245 TAGAGGAACTGCGTACTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Marco ENSRNOG00000049303 ENSRNOT00000075773 1 1 1 80 16 85118085 85118522 AACCTGGGATGAAAGGGTC 59 85117350 85117369 GGACAACCAGGTTGAAATCG 60 NA Rattus norvegicus 81 AABR07026002.1 ENSRNOG00000022358 ENSRNOT00000045197 1 1 1 60 16 58791175 58791193 ACATAGCATGTCACCACAG 58 58791214 58791235 TCATCTTTCTCCATCCTTACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026002.1 ENSRNOG00000022358 ENSRNOT00000045197 3 1 1 60 16 58791623 58791643 AGGTGAAGAAAGGAAAGATGG 58 58791663 58791683 TGTACTCTTACAATGCTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab3c ENSRNOG00000011623 ENSRNOT00000015871,ENSRNOT00000086851 1 2 2 80 2 41592182 41684262 CTGTACAAGATTGGTCAACTCAG 60 41592124 41592142 TGTCACATTTGTTTCCGGC 59 NA Rattus norvegicus 81 Cers2 ENSRNOG00000021138 ENSRNOT00000080324 2 1 2 84 2 196494814 196496307 ATAACTGGAAAGGAGCTGGG 60 196496354 196496372 CACTCTGAGGATCCCTTCC 59 NA Rattus norvegicus 81 Thtpa ENSRNOG00000018105 ENSRNOT00000087430 1 1 2 81 15 33757544 33757562 GCTAAGCTCCTGGTCTACC 59 33757607 33758567 CTGAGGATCCGGAACTGTC 60 NA Rattus norvegicus 81 Arl5a ENSRNOG00000006839 ENSRNOT00000076134 3 1 2 106 3 37946948 37946966 TTCTAGGGTGAAGACCGAG 58 37939185 37946878 AACTTTGTGCTCAGACGAG 58 NA Rattus norvegicus 81 Vcam1 ENSRNOG00000014333 ENSRNOT00000078806,ENSRNOT00000019377 3 2 3 81 2 219087869 219090080 ACATCTACTCATTCCCTAAGGA 58 219087809 219087827 AAACACTTGACCATGACCG 58 NA Rattus norvegicus 81 Nupl1 ENSRNOG00000012644 ENSRNOT00000017204 3 1 2 80 15 40528148 40528169 TGCGGAAATAGCTTTAAGAACC 59 40526760 40528108 ACTCTGAAGTAGTCAGCAGG 59 NA Rattus norvegicus 81 Rnpc3 ENSRNOG00000017310 ENSRNOT00000088533,ENSRNOT00000087714,ENSRNOT00000023366 3 3 3 115 2 216496990 216498237 TCCCAAAGTTTGCATCCTG 58 216496893 216496911 TTGTTTAATGCTGCAGGCA 59 NA Rattus norvegicus 81 Map4 ENSRNOG00000020748 ENSRNOT00000056161 2 1 2 80 8 118148726 118148746 GCTACAGCCATATTCAATCCA 58 118148786 118153784 TCTGAATCTGAACATTGCCAC 59 NA Rattus norvegicus 81 Nup155 ENSRNOG00000013411 ENSRNOT00000082694,ENSRNOT00000046069 1 2 2 80 2 57237363 57239212 CACTAGGAAATCCAAATACCACTG 60 57239251 57239269 GCTGGGTGTTTCCATTCTC 59 NA Rattus norvegicus 81 Mospd2 ENSRNOG00000003350 ENSRNOT00000084395,ENSRNOT00000004494 2 2 2 80 X 31167574 31167595 GAGTAAGAATGAGATCCAGGAG 58 31167632 31171999 CTATACTTGAAAGGATCTGTCCC 58 NA Rattus norvegicus 81 Mospd2 ENSRNOG00000003350 ENSRNOT00000084395 2 1 2 80 X 31179224 31179242 GTCTGATGCTGAAGGACAG 58 31179282 31180274 CTAGTAAGCGATTGAGTTGTAGG 59 NA Rattus norvegicus 81 Ash1l ENSRNOG00000020386 ENSRNOT00000085690 2 1 2 80 2 188330319 188339651 CCATTCATGTTGATGTCTACGT 59 188339687 188339710 CATCTGGCTTCTTACAATTACAGG 60 NA Rattus norvegicus 81 Adad1 ENSRNOG00000017246 ENSRNOT00000023282,ENSRNOT00000077096 2 2 2 80 2 123814236 123820246 GGGAAGATCACTGAAAGTTCTC 59 123820287 123820305 TCGACTTAACATTGCAGCC 59 NA Rattus norvegicus 81 Adad1 ENSRNOG00000017246 ENSRNOT00000023282,ENSRNOT00000077096 3 2 2 80 2 123814237 123820247 GGAAGATCACTGAAAGTTCTCC 59 123820287 123820306 ATCGACTTAACATTGCAGCC 59 NA Rattus norvegicus 81 RGD1563714 ENSRNOG00000031494 ENSRNOT00000050195 1 1 2 80 5 136075078 136075096 CTCATAGCCATGCTCATCC 58 136074943 136075035 CTGGAGAATCGAAGAGTCAC 58 NA Rattus norvegicus 81 Slc6a20 ENSRNOG00000006010 ENSRNOT00000008172,ENSRNOT00000007467 2 2 2 80 8 132668422 132669451 CATTTCAGGTCTGGTGTGC 59 132668360 132668380 ATGTCAAACCAGTAGTTCCCA 59 NA Rattus norvegicus 81 Slc6a20 ENSRNOG00000006010 ENSRNOT00000008172,ENSRNOT00000007467 2 2 2 80 8 132716701 132717712 CATTTCAGGTCTGGTGTGC 59 132716639 132716659 ATGTCAAACCAGTAGTTCCCA 59 NA Rattus norvegicus 81 Crnn ENSRNOG00000008721 ENSRNOT00000011762 1 1 1 60 2 193429285 193429304 TGGAATATGAGTTTGCCGAC 58 193430061 193430079 ACTTCATCCACAGTTGCAG 58 NA DesignNoJunction Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000085775 3 1 6 108 1 76475251 76475270 ATCATGGTTTGAGCACATCC 59 76260552 76475186 CTTCTTTATGGATCCCATTGTATCC 60 NA Rattus norvegicus 81 Dnajc4 ENSRNOG00000043060 ENSRNOT00000087285,ENSRNOT00000028731 3 2 2 60 1 222243175 222243194 CATCTACAATGACACTCGGG 58 222243055 222243073 GTGCTTCTGCTGAATCCTG 59 NA DesignNoJunction Rattus norvegicus 81 Simc1 ENSRNOG00000016932 ENSRNOT00000022980 1 1 3 80 17 10617660 10618272 CAGTATGAATCGTTAACGCTG 58 10617600 10617618 CTCCATGACATAGGTGAGC 57 NA Rattus norvegicus 81 Negr1 ENSRNOG00000021410 ENSRNOT00000029312 2 1 2 92 2 263069233 263212031 GAGAAACAGTCCCTCCCTC 59 263212086 263212105 TACTTGACCTGTTGAGCCAG 60 NA Rattus norvegicus 81 Zcchc2 ENSRNOG00000002882 ENSRNOT00000061814 2 1 3 87 13 25994601 25994619 CAGGCCTTCCTTCAGAGTC 60 25994668 25998652 TGTGCTGTAACACATTGAAGC 60 NA Rattus norvegicus 81 Sema3e ENSRNOG00000006631 ENSRNOT00000008936 3 1 2 96 4 17439854 17593896 GTCTCATAAAGAACTCTTGGAACTG 60 17439782 17439801 TTGATACTCATCCAGCAGCA 59 NA Rattus norvegicus 81 Dpy30 ENSRNOG00000027126 ENSRNOT00000087805,ENSRNOT00000039132 2 2 2 80 6 22311420 22316551 CTCGCAAAGGAAAGACCAC 59 22316594 22316613 TCGATCTTCAAACTGTGCCT 60 NA Rattus norvegicus 81 Agbl1 ENSRNOG00000022610 ENSRNOT00000083590,ENSRNOT00000031334 1 2 2 80 1 137955846 137966300 GGGAAAGAAGATGATGACTTGG 59 137966339 137966359 AAGTTCCTCCTCAGGTAAGTC 59 NA Rattus norvegicus 81 Ints6 ENSRNOG00000009873 ENSRNOT00000086271 1 1 2 80 15 45859856 45862370 GCATCCAGATTTAAGAAGCGA 59 45859796 45859814 GATCTGATTGGCTCTCCGA 59 NA Rattus norvegicus 81 AABR07003241.1 ENSRNOG00000049860 ENSRNOT00000056467 2 1 1 60 1 99864155 99864174 TCATCTTCAGTTTCCTCAGC 58 99864679 99864700 CTTCAGTCTGAGGAGAATTAGC 58 NA DesignNoJunction Rattus norvegicus 81 Agap3 ENSRNOG00000012764 ENSRNOT00000084777 1 1 3 80 4 7208289 7208308 GTTCCATTTCCAGCACTGAC 60 7205435 7208246 AGGACTCCTCTGTCTCAGG 60 NA Rattus norvegicus 81 Pdp1 ENSRNOG00000016180 ENSRNOT00000090376,ENSRNOT00000067823 1 2 3 80 5 25580002 25583507 CCCAGACGAATTGGAATCC 58 25579940 25579958 AAACAGTTGAGTTGGTGCT 58 NA Rattus norvegicus 81 Zp2 ENSRNOG00000057989 ENSRNOT00000088536 2 1 2 106 1 189911473 189911617 GAGAGTCTACTGGTTGCGT 59 189910452 189911403 CACAAATGAGAGTGCCTGG 59 NA Rattus norvegicus 81 Tpmt ENSRNOG00000016468 ENSRNOT00000022085 3 1 2 81 17 18037403 18038285 GTGTTTAAGAGTTCTTCCGGG 59 18041211 18041229 CAAACTTGCCGATGTTTGC 59 NA Rattus norvegicus 81 Abcg1 ENSRNOG00000001158 ENSRNOT00000001533,ENSRNOT00000083505,ENSRNOT00000078031 1 3 3 84 20 9791406 9817307 GGAAGAAAGGATACAAGACCCT 60 9817352 9817370 CCAGAAGGACCCATGATGG 60 NA Rattus norvegicus 81 Jade2 ENSRNOG00000004956 ENSRNOT00000082585,ENSRNOT00000043343 1 2 2 80 10 37290994 37291014 CAAGAATGGGAGAAAGGTGTG 59 37286560 37290952 TAGTGGTGGGAGGATCCTC 60 NA Rattus norvegicus 81 Prl4a1 ENSRNOG00000016436 ENSRNOT00000087424 3 1 2 85 17 38716056 38718296 CAATGGTCCTCCTGGACAG 60 38715989 38716010 AGTTTAGCTCTCATAGCAGAGG 60 NA Rattus norvegicus 81 Sh3kbp1 ENSRNOG00000004322 ENSRNOT00000006438,ENSRNOT00000006741,ENSRNOT00000074898 3 3 3 80 X 37983848 38069152 AGAACCAATAAACGAGGAGAG 58 37983788 37983807 AAGCTCATCGTCATTCTGAG 58 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000084756 2 1 10 81 2 231243010 231255697 TACAACAGCAACACTATCCC 58 231242948 231242966 CTGAAGCCAAGGTGATCTG 58 NA Rattus norvegicus 81 Zfp772 ENSRNOG00000015598 ENSRNOT00000079497 1 1 2 99 1 69739357 69739999 CTCGGACTTGTACCTTCCG 60 69738151 69739294 TCCAACAACCTGGAGTCAG 59 NA Rattus norvegicus 81 Zfp772 ENSRNOG00000015598 ENSRNOT00000079497 2 1 2 100 1 69739358 69740000 TCTCGGACTTGTACCTTCC 58 69738151 69739294 TCCAACAACCTGGAGTCAG 59 NA Rattus norvegicus 81 Tmco2 ENSRNOG00000012340 ENSRNOT00000016492 2 1 1 60 5 140023850 140023868 TGCCTTATGGAAACGAAGC 59 140020247 140020267 GAGTGTGATCACAAACACCAC 60 NA DesignNoJunction Rattus norvegicus 81 Phf2 ENSRNOG00000016816 ENSRNOT00000087692,ENSRNOT00000022669 2 2 2 80 17 16257052 16257461 TTGGAAGCATTCAAAGGTTCTC 60 16257499 16257520 ACCATTGAGAATCTTAGCTCCT 59 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000078903,ENSRNOT00000027487 1 4 7 80 1 215610467 215610575 CACCTGAAGAGTGTGATGC 59 215610619 215610637 GTTCTGCTTCTCGGATTCG 59 NA Rattus norvegicus 81 Fsd2 ENSRNOG00000019278 ENSRNOT00000026089,ENSRNOT00000078916 2 2 2 80 1 143374931 143378414 GGTAACTGAATCTGTTGTAGGC 59 143374872 143374891 ACGTAGATCGTGTAGCTGTG 60 NA Rattus norvegicus 81 Tagln3 ENSRNOG00000059539 ENSRNOT00000090230,ENSRNOT00000087508 1 2 2 80 11 60074814 60084682 TCTATGGGAAGGGAAGGAC 58 60084725 60084744 CCATCATCCTTGGTAACTGC 59 NA Rattus norvegicus 81 Ptpn6 ENSRNOG00000014294 ENSRNOT00000065416,ENSRNOT00000082739,ENSRNOT00000079947 2 3 3 80 4 157246377 157246686 AACATTCTTCCCTTTGACCAC 59 157246317 157246337 GGCATTGATGTAATCAGACCC 59 NA Rattus norvegicus 81 Nxpe5 ENSRNOG00000027061 ENSRNOT00000030161 2 1 2 84 12 19515801 19519214 CATGGAAGAGGTGTTCTGC 59 19519261 19519280 ATCTTCAGAGACAGGATGGG 59 NA Rattus norvegicus 81 Plce1 ENSRNOG00000014276 ENSRNOT00000067149,ENSRNOT00000079219 2 2 2 80 1 257427275 257427296 TTGAGTACAATGAAGAAGTCCC 58 257427336 257428347 CCATGTCATAGACCTTTCCC 58 NA Rattus norvegicus 81 Exosc9 ENSRNOG00000014674 ENSRNOT00000089553,ENSRNOT00000020662 1 2 2 80 2 123271338 123271356 GCTGGTGTGAAAGTAGCAG 59 123271397 123272311 TCCACCTTCTTTCCTAACTCTC 59 NA Rattus norvegicus 81 Slc22a5 ENSRNOG00000008432 ENSRNOT00000041253 2 1 4 83 10 39323284 39323302 AGCTGGAACTGGAGAACTG 59 39306472 39323239 ATTTCTGTTCCTCTGTCACGA 60 NA Rattus norvegicus 81 March2 ENSRNOG00000007769 ENSRNOT00000090849 2 1 3 93 7 18577206 18577227 ACCTCAGTATGTAGCTCAAGTG 60 18564675 18577152 CTGGGTCCTTTAGCCACTC 60 NA InUTR Rattus norvegicus 81 Ppp2r2b ENSRNOG00000018851 ENSRNOT00000041188,ENSRNOT00000079585 2 2 2 80 18 37007715 37007735 ATGACCAGAGACTATCTGACC 59 36988932 37007675 GTCATGAACCTGGTATGTCTC 58 NA Rattus norvegicus 81 mrpl11 ENSRNOG00000019970 ENSRNOT00000027091 3 1 2 129 1 220244928 220244946 TTGTCCGTTCCATCATTGG 58 220246135 220246154 CAAATCCGCCTCTTCTGAG 58 NA Rattus norvegicus 81 Qpct ENSRNOG00000005705 ENSRNOT00000079864 1 1 2 80 6 1657446 1674822 CAGGAGAAGCACATCATGC 59 1674866 1674884 CGTCCTACTGAGGAAGGTG 59 NA Rattus norvegicus 81 Rn60_15_0083.1 ENSRNOG00000008664 ENSRNOT00000011480 3 1 1 61 15 4130897 4130915 AAAGGCTACCACAACTCCA 59 4131051 4131072 CTTCCTTCTTGGCATTCTTACC 59 NA DesignNoJunction Rattus norvegicus 81 Casp2 ENSRNOG00000016707 ENSRNOT00000022543 2 1 2 81 4 71664396 71664415 TTGACAATGCTAACTGTCCA 58 71664459 71664561 GATCCAATAGCACCTCCAC 58 NA Rattus norvegicus 81 Iars ENSRNOG00000014616 ENSRNOT00000086344 1 1 2 156 17 15358007 15358025 TTAACAGGAACTGTGGGCA 59 15357283 15357891 TAGAGACATCTTGTGTCTGAGTC 60 NA Rattus norvegicus 81 Ppm1b ENSRNOG00000030667 ENSRNOT00000083470 1 1 4 98 6 8219160 8219179 TGAAGGGATTACTTGTCCCA 58 8219239 8249807 GTAACGAATCTGCATGACCT 58 NA Rattus norvegicus 81 Adcy6 ENSRNOG00000054757 ENSRNOT00000088323,ENSRNOT00000082699 2 2 2 82 7 140281260 140281374 AATGTCAGCATCCTGTTTGC 60 140281197 140281216 AAGGTCATGACCAGTTCCTG 60 NA Rattus norvegicus 81 Spry4 ENSRNOG00000013851 ENSRNOT00000018511 3 1 1 122 18 32595181 32595199 GATGCTTGTGACTCTGCAG 59 32605436 32605454 TGAGCTGGGATTCAAAGGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Slc25a23 ENSRNOG00000047781 ENSRNOT00000086575,ENSRNOT00000073000 2 2 2 80 9 9990785 9991738 AAATCCTACACAGCATGGAC 58 9991781 9991799 GAGAGTGCAGCAGAAAGTG 59 NA Rattus norvegicus 81 Slc25a23 ENSRNOG00000047781 ENSRNOT00000086575,ENSRNOT00000073000 3 2 2 80 9 9991830 9994016 GGAAGCATTCAACAGTCCT 58 9994059 9994078 TGCCTGTAAGTTTCTCTTGC 59 NA Rattus norvegicus 81 Kcnh2 ENSRNOG00000009872 ENSRNOT00000013800 3 1 2 88 4 7358505 7373819 TTCTACCGGAAAGATGGGAG 59 7373868 7373888 AGGATAAACATGATGACAGCC 58 NA Rattus norvegicus 81 Ewsr1 ENSRNOG00000009437 ENSRNOT00000012634 2 1 2 82 14 85343701 85343719 CTATACCCAGGCTCAGAGC 59 85339630 85343655 TGGTATAACCAGTGGGAGG 58 NA Rattus norvegicus 81 Fcgr3a ENSRNOG00000024382 ENSRNOT00000047434,ENSRNOT00000086223 2 2 2 80 13 89392368 89395472 TAAGCATAGGAGATCCGACG 59 89395514 89395533 ACAAGAGTCCTATCAGCAGG 59 NA Rattus norvegicus 81 Tead1 ENSRNOG00000015488 ENSRNOT00000090042 3 1 2 92 1 177651601 177651621 AAGACAAGGACTAGGAAGCAG 60 177654066 177654174 ACTAGACACCTTAATGGCGG 60 NA Rattus norvegicus 81 Gucy1b2 ENSRNOG00000009440 ENSRNOT00000087678,ENSRNOT00000012948 2 2 3 84 15 45524574 45535931 CAAGGTTCTGGATGTGTCC 58 45524508 45524529 GTCATAGCCAGACATCTTACAG 59 NA Rattus norvegicus 81 Slc17a3 ENSRNOG00000032745 ENSRNOT00000082719 3 1 4 89 17 43524239 43532904 CCATGTCAGGAAGTATTGGT 57 43524169 43524187 GGCTACTTATCCATGGGTG 57 NA Rattus norvegicus 81 Pkm ENSRNOG00000011329 ENSRNOT00000083666 3 1 2 82 8 64494729 64494747 GTGTTTGCGTCTTTCATCC 58 64494793 64495804 GCTAGGAAGACCTTCTCCT 58 NA Rattus norvegicus 81 Snx14 ENSRNOG00000011348 ENSRNOT00000086161 1 1 2 170 8 96026391 96026412 TCACTCATAACCCTTCTCAGAG 59 96023448 96023474 ACTTATACTTTCAAAGGGTGCC 59 NA Rattus norvegicus 81 Hes6 ENSRNOG00000020194 ENSRNOT00000066346,ENSRNOT00000086678 3 2 2 183 9 98551104 98551122 AGAGTCTTCAGGAGTTGCG 59 98550621 98550639 ATGCATTGGATGTAGCCAG 58 NA DesignNoJunction Rattus norvegicus 81 RGD1560146 ENSRNOG00000026169 ENSRNOT00000077492 1 1 2 101 5 115343833 115343851 GATTTGGGTTACCGAGGTG 58 115328045 115334701 TTTATTCTTTCCTGCTGGCA 58 NA Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000079722,ENSRNOT00000082254,ENSRNOT00000073241,ENSRNOT00000080995,ENSRNOT00000045656,ENSRNOT00000074303 3 6 6 84 1 282646145 282646166 GGCACTGCTCAAATAATAAAGG 58 282646210 282683839 GAGGAAGCATCATTTGTGCT 59 NA Rattus norvegicus 81 Abcc3 ENSRNOG00000002948 ENSRNOT00000003977,ENSRNOT00000051497 1 2 4 80 10 82050736 82050759 TTTGAAGACTGCACTCTGAC 58 82047947 82047966 TACTCCTTTGTCCAAGACCA 58 NA Rattus norvegicus 81 AC127605.1 ENSRNOG00000033156 ENSRNOT00000043970 3 1 2 70 X 53234810 53234828 GTACCTTGAGGAGCAGGAC 60 53234620 53234638 CTTCTCTGAAAGCCAGCCT 60 NA DesignNoJunction Rattus norvegicus 81 Nckap1l ENSRNOG00000036829 ENSRNOT00000088956 1 1 2 80 7 145088598 145088733 AAGACTATGCTGACTCGAGC 60 145088775 145088794 CTTTGATGTGTCTTCGGACC 59 NA Rattus norvegicus 81 Ryr1 ENSRNOG00000020557 ENSRNOT00000079473 1 1 2 80 1 87975949 87976006 CCATAACAACGCTAATCTCCA 58 87975889 87975907 AGACTAAGGCTGGACAAGG 59 NA Rattus norvegicus 81 Rasl11a ENSRNOG00000000956 ENSRNOT00000001264 3 1 2 81 12 9990082 9990103 ATGGAACTTAACCAGTGATGTG 59 9988451 9990041 CAGCTTAATGTCCGAGTAGC 59 NA Rattus norvegicus 81 Paip1 ENSRNOG00000058580 ENSRNOT00000091387,ENSRNOT00000081157 1 2 2 80 2 52310622 52313173 TATCTACCAACAGGCCACG 59 52313217 52313235 GTCAGATGATGGGACAGGT 59 NA Rattus norvegicus 81 Tars ENSRNOG00000019023 ENSRNOT00000051910 3 1 2 126 2 61409224 61413943 GAGAAGCCGTTGAATCCCT 60 61409116 61409135 TGACTTTAATCGGCTTGCTG 59 NA Rattus norvegicus 81 Asgr2 ENSRNOG00000030726 ENSRNOT00000087121 3 1 3 136 10 56716967 56716985 TTAACTGGGTGGAGTTTGG 57 56717084 56717180 GAAGAATTACTGCTCCTCCC 58 NA Rattus norvegicus 81 Nedd9 ENSRNOG00000014548 ENSRNOT00000078310,ENSRNOT00000067374,ENSRNOT00000090794 3 3 3 86 17 23175159 23177431 TGGAGCATCATCAGCTGAG 60 23177478 23177499 AGGGTTTCCATTTGGAAATGTC 60 NA Rattus norvegicus 81 Myo9b ENSRNOG00000016256 ENSRNOT00000087576,ENSRNOT00000086105 1 2 5 85 16 19728867 19728886 TGAGGAGCTGGATGTTAACG 60 19729169 19730709 GGTTATGCAAATCGCTCCG 60 NA Rattus norvegicus 81 Nop58 ENSRNOG00000016486 ENSRNOT00000022676 2 1 2 117 9 66518749 66518767 GTAGAAGAGGAGCCGACTG 59 66518847 66519559 TCTCTGGACTAGGAACTGCT 60 NA Rattus norvegicus 81 Veph1 ENSRNOG00000012427 ENSRNOT00000088559 2 1 3 86 2 157873801 157873820 GGAAGTTCATCAAGAGGTGG 58 157869908 157873752 GGTCGTCCTTAGATTTCCC 57 NA Rattus norvegicus 81 Spag9 ENSRNOG00000002749 ENSRNOT00000085681 3 1 2 80 10 81824280 81824298 GGAGAGGATCTTCCACTGG 59 81824339 81827376 TAAAGTTCTGGATTTCTGCCAC 59 NA Rattus norvegicus 81 Znrd1 ENSRNOG00000000779 ENSRNOT00000087098,ENSRNOT00000077405 3 2 3 80 20 2089438 2092245 TGTATCAACTGCAAGTTTCAGG 59 2092286 2092304 AAGAGGAGGAAAGGACTGC 59 NA Rattus norvegicus 81 Tpk1 ENSRNOG00000029922 ENSRNOT00000048203 1 1 1 80 4 72958491 73004348 TACTACACCAAGAAGGGCTG 59 72958430 72958449 GAGCACTTGAAGACACTTGG 59 NA Rattus norvegicus 81 Itgae ENSRNOG00000046639 ENSRNOT00000073209 2 1 2 80 10 59682174 59682192 CCTTATGAAGTGGAGCGGA 59 59682236 59683682 TCATCCTCACAAAGCTCCT 58 NA Rattus norvegicus 81 Lrrc16a ENSRNOG00000016576 ENSRNOT00000059510 3 1 2 80 17 43329422 43329440 GTCTCCTTGGACAAAGAGC 58 43329484 43338398 TCTCCTTGAGACTTCCTGG 58 NA Rattus norvegicus 81 Tmem14c ENSRNOG00000015437 ENSRNOT00000066371,ENSRNOT00000020737 3 2 2 124 17 21572913 21575513 TTTCCTAGCTACGTCTGGG 59 21571935 21571954 TAAGTCCAAGTTTGGCAACC 59 NA Rattus norvegicus 81 Tmod4 ENSRNOG00000021088 ENSRNOT00000088312,ENSRNOT00000028630 2 2 2 80 2 196299005 196299194 AGTAGATAACCAGCGCCAG 59 196299237 196299256 ACAATAGACGGACACTGCTC 60 NA Rattus norvegicus 81 Slc4a5 ENSRNOG00000010378 ENSRNOT00000014249 1 1 2 80 4 114922707 114922726 GAAAGTGGAAGAGAAGGCTG 59 114922767 114924170 GAAGGGAAATCTTGTTCTGGG 59 NA Rattus norvegicus 81 Cd300lf ENSRNOG00000021424 ENSRNOT00000064284 1 1 2 80 10 103679339 103679358 GTGTGGAATTACAAAGGCTG 57 103673813 103679297 CCACTGTCATACCTCTTACC 57 NA Rattus norvegicus 81 Tpcn2 ENSRNOG00000013387 ENSRNOT00000017914 1 1 2 80 1 218435363 218435381 TACTTCCGGAACCTTCCAG 59 218434538 218435319 AGGGATCATCACATCAGGG 59 NA Rattus norvegicus 81 Tpcn2 ENSRNOG00000013387 ENSRNOT00000017914 2 1 2 80 1 218435364 218435382 CTACTTCCGGAACCTTCCA 59 218434539 218435320 GGGATCATCACATCAGGGT 59 NA Rattus norvegicus 81 Gramd3 ENSRNOG00000015225 ENSRNOT00000020570,ENSRNOT00000078518 3 2 2 80 18 51574550 51574571 ACATATTCGTTTCCTTGCTGTC 59 51574609 51574718 CACTTGTGTTCTCTAAGTGTCC 59 NA Rattus norvegicus 81 RT1-M6-1 ENSRNOG00000022107 ENSRNOT00000086007 3 1 4 80 20 2059776 2078315 CACTGAGATGGAAACCAGC 59 2078359 2078377 CTCCAATGGTGACAAACCC 59 NA Rattus norvegicus 81 Slc37a4 ENSRNOG00000011361 ENSRNOT00000089763 1 1 2 80 8 48721811 48722116 TTACAGAGCACGAGATCTGG 59 48722159 48722177 CTCCAAACAAGGCAATGGG 59 NA Rattus norvegicus 81 Mipep ENSRNOG00000013876 ENSRNOT00000018845 1 1 2 81 15 41104124 41104146 AAACCTAGTAGGCTATCTACCT 57 41109164 41109182 AAGGAACTGCATGACAGTC 58 NA Rattus norvegicus 81 Tlk1 ENSRNOG00000009300 ENSRNOT00000076554 1 1 2 117 3 57389794 57389812 AGTACTGGGAGTTGCAGTG 59 57363923 57376269 GTTTCTTCTCTGGTGTCTCTG 58 NA Rattus norvegicus 81 Aldh3b1 ENSRNOG00000017512 ENSRNOT00000023789,ENSRNOT00000085312 2 2 2 80 1 219155225 219155245 AATTGAGTTCATCAACCGGAG 59 219152519 219155184 AACACCTGTTTGATGACCTG 58 NA Rattus norvegicus 81 LOC100365902 ENSRNOG00000025383 ENSRNOT00000038352 1 1 2 120 X 37336863 37337311 AACGGTATCGTTGGACCTG 60 37337393 37338284 ATATCTGACCCTGGTTAGCAG 59 NA Rattus norvegicus 81 LOC100365902 ENSRNOG00000025383 ENSRNOT00000038352 2 1 2 121 X 37336863 37337311 AACGGTATCGTTGGACCTG 60 37337393 37338285 AATATCTGACCCTGGTTAGCAG 60 NA Rattus norvegicus 81 P2rx3 ENSRNOG00000008552 ENSRNOT00000033427,ENSRNOT00000088815 1 2 3 109 3 72433271 72433289 GTGTCGGATTATGTGACCC 58 72432625 72432842 TTCTCTTCATTCTCTGGACAG 57 NA Rattus norvegicus 81 Tmeff2 ENSRNOG00000016623 ENSRNOT00000081677 1 1 2 80 9 55389607 55390717 CATCTTGCAGATGTGATGC 57 55389545 55389563 GACCAGGAACAACGTAGAG 58 NA Rattus norvegicus 81 Cyp4f18 ENSRNOG00000015751 ENSRNOT00000021609,ENSRNOT00000085328 2 2 2 80 16 19512855 19512874 GTGATGATGCCCTTAAAGCC 59 19512916 19515086 CATGTTCATCCTTGCTCAGC 60 NA Rattus norvegicus 81 Ceacam1 ENSRNOG00000020578 ENSRNOT00000051892,ENSRNOT00000090629 3 2 4 80 1 82338649 82338670 TATCAGTGTGAGATCTCCAACC 59 82332690 82338611 TTGTGTTGGATCAGGTATTACG 59 NA Rattus norvegicus 81 Mtx1 ENSRNOG00000042977 ENSRNOT00000064715 1 1 2 83 2 188523980 188526426 CACCTTCGTAAAGAGATCCA 57 188523916 188523934 CATAGCCTCTGCATACCAC 58 NA Rattus norvegicus 81 Mtx1 ENSRNOG00000042977 ENSRNOT00000086683 3 1 2 81 2 188523981 188524123 GAAACTACTCCCTATGCTAATCC 58 188523922 188523940 CTCTGCATACCACTTTCGG 58 NA Rattus norvegicus 81 Nme8 ENSRNOG00000058285 ENSRNOT00000092051,ENSRNOT00000087178,ENSRNOT00000090021 2 3 3 88 17 47320790 47320836 AGAAGAACCTGACCCTTTGG 60 47320883 47321919 CCATATACTCTTGCAAACTGTCC 60 NA Rattus norvegicus 81 Odf2 ENSRNOG00000014584 ENSRNOT00000040457,ENSRNOT00000020407,ENSRNOT00000041921 3 3 4 81 3 8467360 8474433 CACTGCAAAGAGGATTCCG 59 8474478 8474496 CTTTCTCTGAGTCGGCCTC 60 NA Rattus norvegicus 81 Slc5a6 ENSRNOG00000057628 ENSRNOT00000081167,ENSRNOT00000082623 3 2 2 81 6 26696067 26696227 ACAACCAGGATATCCCTGTG 59 26696270 26696289 TCTTTGTCTCTGCTGTCCTG 60 NA Rattus norvegicus 81 Ccdc169 ENSRNOG00000038095 ENSRNOT00000019018,ENSRNOT00000082923 3 2 2 83 2 144551512 144553591 CCACATGAAGGATGTCGTG 59 144553638 144553656 AGGTCAGTGTTGAGGTTGG 60 NA Rattus norvegicus 81 Ddx51 ENSRNOG00000037480 ENSRNOT00000088306 3 1 2 80 12 52068726 52068923 ATCCAGCTCCTTATCAGCA 58 52068664 52068684 AGCATCATAGTTGATCACCAG 58 NA Rattus norvegicus 81 Rps6kb2 ENSRNOG00000021689 ENSRNOT00000029580 2 1 2 80 1 219407197 219407305 CGAGTCTGCAATCAGAAGAG 59 219407136 219407157 TGTCATCTGGACTATCTACTGG 59 NA Rattus norvegicus 81 Gstt2 ENSRNOG00000052415 ENSRNOT00000081140,ENSRNOT00000080203 3 2 2 81 20 13761044 13761356 ATTTACTCAAAGGGCAGCA 57 13761401 13761419 CTTCCGTCTTTGAGGACAG 58 NA Rattus norvegicus 81 Cyct ENSRNOG00000024457 ENSRNOT00000050355 1 1 4 87 3 63139903 63207749 CAAACAAGAACAAAGGACCGA 59 63139836 63139856 GGATAGGCATGCACAATAGTG 59 NA Rattus norvegicus 81 Adarb1 ENSRNOG00000001227 ENSRNOT00000083851 2 1 2 83 20 12075251 12075269 ACCTGTACATCAGCACCTC 59 12075316 12076502 GTCTATCAGCCGGTTCCTC 60 NA Rattus norvegicus 81 LOC100911373 ENSRNOG00000015798 ENSRNOT00000084658,ENSRNOT00000021299 3 2 2 80 9 64520278 64520298 TAGAGATTGCACAAGATGGAG 58 64513776 64520236 GGTCAGAATAAGGCTCTGG 57 NA Rattus norvegicus 81 LOC100911373 ENSRNOG00000015798 ENSRNOT00000084658 3 1 2 90 9 64572909 64572928 GAGGATGTTGTCAATTGCCC 60 64571019 64572856 GATTTGTTGTTTGCGTCGC 59 NA Rattus norvegicus 81 Cpd ENSRNOG00000003873 ENSRNOT00000005262 1 1 2 94 10 63326545 63332247 GCAGGAACAAGTTTGTGCT 59 63332305 63332323 TCCAGTGGTCTTATGCTCG 59 NA Rattus norvegicus 81 Carf ENSRNOG00000017491 ENSRNOT00000087194 2 1 2 98 9 66889886 66889907 TCTTTGGGAAATTCTACTGCAC 59 66902397 66903412 TTCAGAGACACCTGGAGGA 60 NA Rattus norvegicus 81 Cd93 ENSRNOG00000024799 ENSRNOT00000034256 3 1 2 97 3 142781961 142781980 AGATTTGGGCACATACCTCC 60 142781881 142781899 ACAGAAGTAGCTTCTGCCC 59 NA DesignNoJunction Rattus norvegicus 81 Crtc3 ENSRNOG00000011975 ENSRNOT00000089591,ENSRNOT00000015948 1 2 2 80 1 142422408 142429031 CATACATGGGTTTCTGTGATGG 60 142418650 142418670 ACAGATTCTCTTCCTTCAGCA 59 NA Rattus norvegicus 81 Chst1 ENSRNOG00000007989 ENSRNOT00000010510 3 1 1 162 3 81509453 81509472 CTTCTCTACCTGAAGGCCTG 60 81510786 81510804 TACTGGATGGCAATGGAGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100910792 ENSRNOG00000012490 ENSRNOT00000084702 1 1 2 149 17 48444481 48455583 ATAAGGTCCTCCAGAAGCTG 59 48394099 48399201 CCTGCATACCTTTGATTGCC 60 NA Rattus norvegicus 81 LOC100910792 ENSRNOG00000012490 ENSRNOT00000084702 2 1 2 149 17 48444482 48455583 ATAAGGTCCTCCAGAAGCT 57 48394099 48399200 CCTGCATACCTTTGATTGC 57 NA Rattus norvegicus 81 Stt3b ENSRNOG00000011922 ENSRNOT00000077792 2 1 2 80 8 123326997 123327015 ATCAACCTCATCCCTCTCC 58 123316784 123326955 CGCAAAGACACCTATGTAGAC 59 NA Rattus norvegicus 81 Rab13 ENSRNOG00000016733 ENSRNOT00000092112 2 1 2 82 2 189581789 189581809 AAGACTTGTCTCATCATTCGC 59 189581850 189583016 CGGATCTTGAAATCAATTCCGA 59 NA Rattus norvegicus 81 Arntl2 ENSRNOG00000001830 ENSRNOT00000055473 1 1 3 84 4 181148156 181148399 CTCTGAAGAGGCATTCAGTG 58 181152759 181152777 CTGAACAATCACTCCAGCC 59 NA Rattus norvegicus 81 Pde4d ENSRNOG00000042536 ENSRNOT00000066384 1 1 3 84 2 41158103 41261852 TCCTACAGTTTCGATGTGGAC 60 41261898 41261916 GAATTAGCCCAGACCCTGG 60 NA Rattus norvegicus 81 Pde4d ENSRNOG00000042536 ENSRNOT00000015138 1 1 3 94 2 40554293 40554312 GAATCAGAGAACATTCCGCG 60 40554369 40704835 AAGTCCTGGAAACCAGTCG 60 NA Rattus norvegicus 81 Zfp709 ENSRNOG00000016186 ENSRNOT00000087597 1 1 2 60 16 19637819 19637837 GAGGAGACCTTCAGGAACC 59 19637563 19637586 CATCTATGTTCTGGTCTTCTTGTG 60 NA DesignNoJunction Rattus norvegicus 81 Zdhhc21 ENSRNOG00000010484 ENSRNOT00000077429,ENSRNOT00000013950 1 2 2 80 5 100927223 100935914 TGTGAAGAAATATCGCGGC 59 100927161 100927179 CCACAGGATCTTCCAACGA 59 NA Rattus norvegicus 81 Zdhhc21 ENSRNOG00000010484 ENSRNOT00000077429,ENSRNOT00000013950 3 2 2 81 5 100927224 100935916 GTTGTGAAGAAATATCGCGG 58 100927162 100927180 CACAGGATCTTCCAACGAG 58 NA Rattus norvegicus 81 Sde2 ENSRNOG00000003247 ENSRNOT00000004350 2 1 2 144 13 99142405 99143762 TCAATCATGAGAAAGCGATGG 59 99143868 99143886 CACTGCCTCTGGTAGTCAG 60 NA Rattus norvegicus 81 Haus8 ENSRNOG00000052038 ENSRNOT00000078714 2 1 2 82 16 19659071 19659089 CAGAAACATCAGGAGCTGG 58 19658290 19658310 CTTTGAAGCGCTAACACAG 57 NA Rattus norvegicus 81 Prepl ENSRNOG00000007326 ENSRNOT00000082353,ENSRNOT00000061826,ENSRNOT00000009660 2 3 3 80 6 8320613 8320632 CTTCGTCCGATGAGAAACAC 59 8320191 8320570 CTGAAGGGTAATGCTGTGG 58 NA Rattus norvegicus 81 Fbxl3-ps1 ENSRNOG00000012168 ENSRNOT00000090699,ENSRNOT00000035839 3 2 2 80 17 8516245 8516693 GTCAGCTTTAAGGTTGATAGCA 59 8516186 8516208 GATAGAGCAATTTACCAGCTGAG 59 NA Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000018185 1 1 5 80 7 120771881 120772232 GACTTGGAAAGAGGTGTTGAG 59 120771821 120771841 AAGGTTTGTCTTTCCTGACTC 58 NA Rattus norvegicus 81 Peli3 ENSRNOG00000019950 ENSRNOT00000079984,ENSRNOT00000027038 1 2 2 105 1 220199678 220202709 GTTCTGGGCTACAATGGGT 60 220199591 220199609 TGACATCTGGCTTCACTCC 59 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000073352 2 1 5 88 1 80543682 80544777 TTGGGTTCCAGTGACATCC 60 80534709 80534949 TCTCTAGTGTAGAAGACTCCCA 59 NA Rattus norvegicus 81 Tlx1 ENSRNOG00000016120 ENSRNOT00000021714 2 1 1 102 1 264893921 264893939 ACAAAGGACAGGTTCACAG 58 264896067 264896085 TTTCCAGCTCACAGATCTG 57 NA DesignNoJunction Rattus norvegicus 81 Slc26a10 ENSRNOG00000029465 ENSRNOT00000052288 2 1 2 80 7 70460338 70460457 TCAGTGTAATGACTTGGTGC 58 70460277 70460297 CTCACAAAGAGTTGTTCTGGA 58 NA Rattus norvegicus 81 Gfm1 ENSRNOG00000012873 ENSRNOT00000042079,ENSRNOT00000017608 2 2 2 80 2 164611575 164614767 GATTTAAAGTTAGCGATCCGGAG 60 164614805 164614825 TTTGTTCTTCAGAGCACTTCC 59 NA Rattus norvegicus 81 Gfm1 ENSRNOG00000012873 ENSRNOT00000017608 1 1 2 80 2 164627237 164627257 GACCCAACATTTAAAGTCCAC 58 164627298 164627320 ATAGATCTCAGGTGCAATTCTC 58 NA Rattus norvegicus 81 Ap1b1 ENSRNOG00000008786 ENSRNOT00000057407 1 1 2 103 14 85272231 85272701 CTGAAGGGATTGGAGACAG 57 85272768 85272786 GAGGTCACTTAAGCCACTG 58 NA Rattus norvegicus 81 Plvap ENSRNOG00000017676 ENSRNOT00000023926,ENSRNOT00000083345 3 2 2 84 16 19913530 19913650 CCTCCACCCATTGATCCAG 60 19913464 19913482 CAGCAGGGTTGACTAGAGG 60 NA Rattus norvegicus 81 Pabpc1 ENSRNOG00000008639 ENSRNOT00000012775 1 1 2 80 7 75410585 75410606 TGCTGTTGGAGATTGATAACTC 59 75410216 75410545 CAGCTTCATCGACCTTTGAG 59 NA Rattus norvegicus 81 Clvs1 ENSRNOG00000006919 ENSRNOT00000009744,ENSRNOT00000087182 2 2 2 80 5 22393167 22469217 AATTGGGATCAGAGTAGGAACTC 60 22469254 22469275 AGGATCTTCGATAAGGACTTCC 59 NA Rattus norvegicus 81 Nfya ENSRNOG00000012702 ENSRNOT00000017157 2 1 2 113 9 14568037 14568055 CAACAGATTGCTGTCCAGG 59 14568132 14568864 GATGGTGATCATGCCTTGC 59 NA Rattus norvegicus 81 Gga3 ENSRNOG00000027057 ENSRNOT00000089894 1 1 2 98 10 104141685 104141703 GATGAGGAGCTCCTCTGTC 59 104141047 104141302 TGGTTCATTCTGGAACAGGT 59 NA Rattus norvegicus 81 Wnk1 ENSRNOG00000009956 ENSRNOT00000080788,ENSRNOT00000079513 3 2 4 125 4 152487487 152495350 ACCCTCAAGTATGGCACAG 59 152485508 152485526 TGTTGAGGAGGTACAGTCG 59 NA Rattus norvegicus 81 Wnk1 ENSRNOG00000009956 ENSRNOT00000079513 2 1 4 80 4 152461619 152461638 TGTGCGAAGTTTAACTGTGC 60 152458824 152461578 CACCATCTTCCTCAGAAATCG 59 NA Rattus norvegicus 81 Ccdc150 ENSRNOG00000013318 ENSRNOT00000017859 1 1 2 84 9 60921455 60921473 TACGAGGTGAACTGGAAGC 59 60921515 60922004 GATTTATTAACCTCCCTCTGAAACC 60 NA Rattus norvegicus 81 Dct ENSRNOG00000008671 ENSRNOT00000011571 1 1 2 80 15 103213989 103214009 CAACTTGGCTACAATTATGCC 58 103208377 103208398 GATTCCAATCACTGAGAGGG 58 NA Rattus norvegicus 81 Psip1 ENSRNOG00000011498 ENSRNOT00000016130 1 1 2 80 5 101558225 101558246 ATCCACAACATAATGGTGACAG 59 101557100 101558185 CTTCTCCAGGTGTCTTTGTC 58 NA Rattus norvegicus 81 Folr1 ENSRNOG00000019902 ENSRNOT00000079675,ENSRNOT00000026962 2 2 2 82 1 166935456 166939255 AAGTTACACGACCAGTGCA 60 166935392 166935413 GAAATGTCCTTATGTGCTTCCT 59 NA Rattus norvegicus 81 Susd2 ENSRNOG00000033389 ENSRNOT00000079996,ENSRNOT00000066773 2 2 3 80 20 13966651 13966871 TCATTTGCAGGTTTAAGGAGAG 59 13966911 13966930 GCAAGGGTGATATACAGTGC 59 NA Rattus norvegicus 81 Susd2 ENSRNOG00000033389 ENSRNOT00000079996,ENSRNOT00000066773 3 2 3 80 20 13966652 13966871 CATTTGCAGGTTTAAGGAGAG 57 13966912 13966931 AGCAAGGGTGATATACAGTG 57 NA Rattus norvegicus 81 Tank ENSRNOG00000008859 ENSRNOT00000011794,ENSRNOT00000081682 1 2 2 80 3 47488401 47488422 TCAACAAACTCTCATTGACAGG 59 47488457 47490278 GGTACATAGTCACAAGTGTTATCTC 59 NA Rattus norvegicus 81 Trim26 ENSRNOG00000032930 ENSRNOT00000079110,ENSRNOT00000085912 1 2 3 89 20 2205975 2206407 GACTTCGCCAACAAGTACC 59 2205904 2205922 ATCTGAGAATTCTCCCGCT 58 NA Rattus norvegicus 81 Xpo7 ENSRNOG00000013288 ENSRNOT00000087450 2 1 2 86 15 52376449 52376468 CACCAACTTGAAGTACTGGG 59 52375428 52376403 CTACTGTATCCAATGGAGAGGT 59 NA Rattus norvegicus 81 Ugt2b17 ENSRNOG00000001990 ENSRNOT00000002724,ENSRNOT00000089471 2 2 3 80 14 22734017 22734039 CTTCAGCATACTGTCAACTACAG 59 22734075 22780251 ATGGCATTCTCCTTATAGGAAGG 60 NA Rattus norvegicus 81 Ehd3 ENSRNOG00000007744 ENSRNOT00000010419 2 1 2 80 6 25076761 25087258 TTCATCAGGTACCTGCTGG 59 25087299 25087320 CACTGCTATGAAGGAATCAGTG 59 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000083301,ENSRNOT00000066419 1 2 8 107 13 68709343 68709780 TTCGACTTCAGGTCTGTGG 59 68709851 68709869 CTCCATGAGGGTCACTGTC 60 NA Rattus norvegicus 81 Mast3 ENSRNOG00000022753 ENSRNOT00000078108,ENSRNOT00000037756 2 2 2 80 16 20408217 20408354 GTTGTCAGTGATGAGATCATGTG 60 20408390 20408412 CAGAAGCCTAGTAATGAGATCCT 59 NA Rattus norvegicus 81 Cul2 ENSRNOG00000015292 ENSRNOT00000066805 2 1 2 81 17 56960386 56962185 TGAGTGCTTTAGATAAGCTTGC 59 56960326 56960347 TCTACTTCATTCTCCGTCATCC 60 NA Rattus norvegicus 81 Cntn6 ENSRNOG00000032517 ENSRNOT00000088070 1 1 2 119 4 136676785 136678205 ATTCTCATCCTCAGGTGAGAG 59 136678285 136678304 CCACTTGCAGTACAACTCAG 59 NA Rattus norvegicus 81 Rps6ka6 ENSRNOG00000002592 ENSRNOT00000003512 2 1 2 96 X 82723524 82723542 GATGCTACCATTCGCTCCT 60 82705885 82723464 AAACACAATCTGTGGCTCG 59 NA Rattus norvegicus 81 Glyatl1 ENSRNOG00000036622 ENSRNOT00000084503,ENSRNOT00000054800 3 2 2 80 1 229049451 229050281 AGATCCAAAGTTCACAATCCAG 59 229050321 229050340 GTGTTCTCTTGACCTTGACC 59 NA Rattus norvegicus 81 Fam174a ENSRNOG00000019087 ENSRNOT00000050494,ENSRNOT00000080129 1 2 2 110 9 102863285 102863303 GAGTCCCAATCCTAGCGAC 60 102863377 102873766 CTTCTCATCCTGACGGTCC 60 NA Rattus norvegicus 81 Tubb4b ENSRNOG00000010170 ENSRNOT00000013863 3 1 1 80 3 2443628 2443649 TCTTCAGACCTGATAACTTCGT 59 2443049 2443067 CTGCACCTTCTGTGTAGTG 58 NA DesignNoJunction Rattus norvegicus 81 Mfap3 ENSRNOG00000002443 ENSRNOT00000003361 3 1 1 65 10 42942678 42942696 GGTACAACTCGAAAGGACG 58 42944137 42944158 GGAAGTTATCAGAAACCAACCA 59 NA DesignNoJunction Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000068545,ENSRNOT00000092187 3 2 7 82 17 57067669 57079367 TGTTGTTCAAGATGAGGAGAC 58 57082587 57082605 CTCGGATCTGGTAAGTTGG 57 NA Rattus norvegicus 81 AABR07018970.1 ENSRNOG00000008814 ENSRNOT00000011656 2 1 1 88 15 82081292 82081310 TAACAGACTCTGCCAACCA 59 82081221 82081242 GGTTGACAAATGTTGTTACCCA 60 NA DesignNoJunction Rattus norvegicus 81 Supt6h ENSRNOG00000012240 ENSRNOT00000089615 2 1 2 173 10 65495505 65496563 GATGATGAGGAGGAAGAGGA 58 65495260 65495369 GTCATCAAAGGATGTGCGT 59 NA Rattus norvegicus 81 Supt6h ENSRNOG00000012240 ENSRNOT00000089615 3 1 2 173 10 65495504 65496563 GATGATGAGGAGGAAGAGGAG 59 65495260 65495369 GTCATCAAAGGATGTGCGT 59 NA Rattus norvegicus 81 Mphosph8 ENSRNOG00000051238 ENSRNOT00000028145,ENSRNOT00000076474 2 2 2 80 15 36940141 36940159 GCACTGTACTTTGCAAAGC 58 36940202 36942782 AACTCTTGAAAGGGTCTCCA 59 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000058735 3 1 11 103 6 99150487 99150505 ATCTGATGTCCTTGCAGGG 60 99151226 99151873 CTCTCCAAACTGCTTTGCTG 60 NA Rattus norvegicus 81 Tsn ENSRNOG00000002319 ENSRNOT00000044095 1 1 2 80 13 34241206 34245705 AACTGGTAAGACGTTCCAG 57 34241144 34241164 TGAAAGTAGAGATGTGAAGGG 57 NA Rattus norvegicus 81 Tsn ENSRNOG00000002319 ENSRNOT00000044095 3 1 2 81 13 34241207 34245706 GAACTGGTAAGACGTTCCA 57 34241144 34241164 TGAAAGTAGAGATGTGAAGGG 57 NA Rattus norvegicus 81 Tnni1 ENSRNOG00000009073 ENSRNOT00000012095 2 1 3 191 13 52628706 52631322 GTCCAGAGGAAATCTAAGATCAC 59 52631938 52633866 TCGGCATAAGTCCTGAAGG 59 NA Rattus norvegicus 81 Abcc8 ENSRNOG00000021130 ENSRNOT00000028696 1 1 2 80 1 102114895 102114914 CCATCTCCAACTCCCTACAC 60 102114506 102114852 AGTTGGAGACCATCAAGGC 60 NA Rattus norvegicus 81 Cdk1 ENSRNOG00000000632 ENSRNOT00000000783,ENSRNOT00000086806,ENSRNOT00000081113 2 3 3 80 20 20583971 20583992 CCATGGATCTCAAGAAGTACCT 59 20584029 20586518 GGTACAAGTAACTCTTAACGAGC 59 NA Rattus norvegicus 81 Klf12 ENSRNOG00000009145 ENSRNOT00000090009 2 1 2 87 15 84446993 84477270 ATGGCAAAGCACAAATGGAG 60 84446925 84446943 AAGGTCACATTTGGCAGGT 60 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000028219,ENSRNOT00000088037 3 2 6 81 15 37013937 37013955 AAGCCAAGGAGAAACTGGA 59 37011904 37013897 CTCATTAGATCTTGCCTCATTAGC 60 NA Rattus norvegicus 81 Dock7 ENSRNOG00000008298 ENSRNOT00000011405 2 1 3 82 5 117754341 117754359 CAGTAACCTGGGATCTGCA 59 117753144 117754296 GTGGTAAACACTTCTCCAGC 59 NA Rattus norvegicus 81 Fam73b ENSRNOG00000017513 ENSRNOT00000065300 2 1 2 90 3 8948675 8949554 TTCTGATGCACCAGATTGTG 59 8949607 8949625 ATGTCTTCTGCTAGGGCTG 59 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245,ENSRNOT00000076432,ENSRNOT00000076849 1 4 6 80 14 44526463 44526482 GGTCTCTGGTTGAAATCCGA 60 44526524 44526857 CAGAACAAGCAACACCTGTC 60 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245,ENSRNOT00000076432,ENSRNOT00000076849 1 4 6 80 14 44526463 44526482 GGTCTCTGGTTGAAATCCGA 60 44526524 44526857 CAGAACAAGCAACACCTGTC 60 NA Rattus norvegicus 81 Fam134b ENSRNOG00000010589 ENSRNOT00000063951,ENSRNOT00000089805 3 2 4 90 2 78249580 78251288 CTACCTACTGTTACTGTTTGCT 58 78251336 78251357 TAGAATGGACTTGACTTTGCTG 59 NA Rattus norvegicus 81 Abca12 ENSRNOG00000015248 ENSRNOT00000057672 2 1 2 80 9 78573997 78575739 TGCTTCATGAAAGACAACTTCC 60 78573938 78573957 TATGAATACAACCCAGGCGA 59 NA Rattus norvegicus 81 Ankdd1a ENSRNOG00000015554 ENSRNOT00000033512 1 1 3 138 8 71036616 71036634 CTACCAGGAGCATGGTCAC 60 71035720 71036515 CATCTTCCTGGTGCTTTCTG 59 NA Rattus norvegicus 81 Hnrnph3 ENSRNOG00000048193 ENSRNOT00000077525,ENSRNOT00000073617,ENSRNOT00000032600 1 3 3 80 20 27213401 27213419 GTGCAGTTTGCTTCAAAGG 58 27213461 27214015 GATCTCAATATACCTGTGCCC 58 NA Rattus norvegicus 81 Abtb2 ENSRNOG00000008510 ENSRNOT00000085760,ENSRNOT00000029922 1 2 2 80 3 93642686 93642706 AATAAGTCAGAGCAAGATGGG 58 93642746 93645856 CATCAGCATCTGAAAGATGTG 58 NA Rattus norvegicus 81 Btbd11 ENSRNOG00000005758 ENSRNOT00000044331,ENSRNOT00000008596 3 2 2 80 7 24070386 24072228 ATATTCCTGTAGTTCAGCTCC 57 24070326 24070344 CTGAATAGTTCTCCTCGCC 57 NA Rattus norvegicus 81 Esr2 ENSRNOG00000005343 ENSRNOT00000041872,ENSRNOT00000007109 3 2 4 81 6 99203186 99203207 TATGCATCTGGGTATCATTACG 58 99184559 99203144 TCCTGGATCCTTGAATGCT 58 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000061525,ENSRNOT00000085883,ENSRNOT00000081979,ENSRNOT00000085137,ENSRNOT00000042743,ENSRNOT00000049746 1 7 7 80 15 5507392 5507412 GACCAACTGGATAAGTGATGC 59 5506891 5507350 TGGAAGTTTCTGATGCGGT 60 NA Rattus norvegicus 81 Dhx34 ENSRNOG00000047575 ENSRNOT00000089718,ENSRNOT00000075327 3 2 2 80 1 78104235 78104253 ACTATGATGCCTTTGCTCC 58 78102137 78104192 TACTCTTCATCTGAAGCACC 57 NA Rattus norvegicus 81 Faf2 ENSRNOG00000017607 ENSRNOT00000091837 2 1 2 112 17 10507310 10510493 TAACTGGAACATGGAGGCTG 60 10507217 10507237 TGTGGTCAGCTGTATTAACCT 59 NA Rattus norvegicus 81 Kcnab2 ENSRNOG00000011550 ENSRNOT00000087043 2 1 2 92 5 169576688 169579812 ATCATTGAAGAGACTGTGCG 58 169576615 169576633 GATCTCCATGGAGCTCCAG 59 NA Rattus norvegicus 81 Pkn3 ENSRNOG00000025892 ENSRNOT00000081787 2 1 3 80 3 8636300 8636321 ACATTGATGAAGAAGGAGACGA 60 8636361 8636791 CTTCATCCTCCTCTCCTTCC 59 NA Rattus norvegicus 81 Agpat4 ENSRNOG00000017731 ENSRNOT00000024213,ENSRNOT00000082958 2 2 2 80 1 48724194 48726151 TGACTGCTACGTTAGGAGG 59 48724132 48724150 TAGAGCTTGTGTAGCCAGG 59 NA Rattus norvegicus 81 Nid2 ENSRNOG00000000341 ENSRNOT00000000383 1 1 2 80 15 4894540 4894685 CTGTCCAACAGGAAGAAAGTG 59 4894480 4894501 CCTTCGTAGCAATGTTCTTAGG 59 NA Rattus norvegicus 81 LOC100911865 ENSRNOG00000036598 ENSRNOT00000078738,ENSRNOT00000091663,ENSRNOT00000073502 1 3 5 80 1 257575476 257694218 CAATTGGGAAGTGATGCGT 59 257694261 257694280 ACTTTCCCACGAACACTAGG 60 NA Rattus norvegicus 81 Papss2 ENSRNOG00000011068 ENSRNOT00000083555 1 1 2 90 1 251203320 251203339 GCTCAAAGGCTTTATGAGGG 59 251207725 251213373 GATGACTCCATCACGGAGG 60 NA Rattus norvegicus 81 Atxn2l ENSRNOG00000018686 ENSRNOT00000068529,ENSRNOT00000080605 3 2 2 80 1 197913603 197913758 ATCAATGGAGGTCCTTCCC 59 197913541 197913562 ATTGTTGGGTGAAGATAAGGTC 59 NA Rattus norvegicus 81 Tgfb2 ENSRNOG00000002418 ENSRNOT00000003313,ENSRNOT00000087023 1 2 2 80 13 105045621 105047220 CTATTGCTTTAGGAATGTGCAG 58 105045562 105045581 CATTTCCATCCAAGATCCCT 57 NA Rattus norvegicus 81 Siglec1 ENSRNOG00000021243 ENSRNOT00000028855 3 1 2 109 3 123622764 123625234 ACTTCCATGCAAATGATCCC 59 123622674 123622692 GTCTACTTGGCACAAGAGG 58 NA Rattus norvegicus 81 Lsm10 ENSRNOG00000025716 ENSRNOT00000079779 2 1 2 76 5 144106928 144106946 GGACTCTTCTTCCCAAACC 58 144107971 144107989 TTCACAGAGTGGCTCAGTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Bud31 ENSRNOG00000000989 ENSRNOT00000001307,ENSRNOT00000076423,ENSRNOT00000088603 2 3 4 80 12 11234579 11235577 GAAAGCCATAAGCAGAGAACTC 60 11234520 11234539 TTCTTCCACTTCGCAATCAG 59 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000075869,ENSRNOT00000090799 1 2 6 80 5 47931466 47933460 TCTACTGAAACAGCCTATTCC 57 47933501 47933520 TTGTCTCCAACTGAAATCCA 57 NA Rattus norvegicus 81 Nat10 ENSRNOG00000008663 ENSRNOT00000044143 2 1 3 88 3 93663847 93663866 ACCTTATCCCAGCCATTTCC 60 93661930 93663796 CTTTGCTGCTTCATCCGAC 60 NA Rattus norvegicus 81 Tp53i3 ENSRNOG00000005177 ENSRNOT00000006924 2 1 2 93 13 75126751 75126769 TCCAAGAGCATGTCCACAG 60 75126825 75142884 CATCATTGACCTTCTCCAGC 59 NA Rattus norvegicus 81 Zfand2a ENSRNOG00000032917 ENSRNOT00000047634,ENSRNOT00000083814 2 2 2 80 12 17254940 17257980 ATTCAAGAAGGATGTGCAGG 58 17258023 17258041 ACATCTGGGATGTCACCTC 59 NA Rattus norvegicus 81 Zfp382 ENSRNOG00000020777 ENSRNOT00000087931,ENSRNOT00000028187 1 2 3 84 1 88586427 88587090 CATCTCGGTGGGATTTCAC 58 88587138 88587156 GAACATTCGCTCTGTCCAC 59 NA Rattus norvegicus 81 Mbtps1 ENSRNOG00000015173 ENSRNOT00000087886,ENSRNOT00000020838 2 2 2 123 19 52181092 52193767 TGAAGTTTGCTGAATCCGAC 59 52180988 52181006 GTTGCATGCCAGAATCCAG 60 NA Rattus norvegicus 81 Ppp6r1 ENSRNOG00000018090 ENSRNOT00000082423,ENSRNOT00000024400 2 2 2 80 1 72772157 72772176 TCATGGATCTCCTATTGCGT 59 72772216 72772319 CTTCATTGAGCCAATTGAAGAC 58 NA Rattus norvegicus 81 Nars ENSRNOG00000017852 ENSRNOT00000024264 1 1 3 80 18 59998014 59998032 AAAGAACCTGGAGGAAGCA 59 59996894 59997973 GCACTAATCTTTACACATGCTG 58 NA Rattus norvegicus 81 Mat1a ENSRNOG00000011351 ENSRNOT00000015190 2 1 2 103 16 18699811 18699831 CACAAACTCACACGGATGG 59 18704780 18704799 CCATTATCCTGCACGTACTG 59 NA Rattus norvegicus 81 Pop1 ENSRNOG00000005243 ENSRNOT00000007190 3 1 2 83 7 73285454 73285705 AGAACGATACCACGTTTCAG 58 73285751 73285769 GACAGAGGCTTCCAATGAG 58 NA Rattus norvegicus 81 Tuft1 ENSRNOG00000020923 ENSRNOT00000079776,ENSRNOT00000089402 2 2 3 80 2 195883206 195883226 CTCCGGGAGGATATAAGTAGC 59 195880868 195883167 TTCTAGTACCACCTGTATCTCC 58 NA Rattus norvegicus 81 Numb ENSRNOG00000009653 ENSRNOT00000013026 1 1 3 103 6 107283897 107283915 AGATCACCAGTGCCTTCAC 60 107280631 107283829 CCCTAGAACCACAGGAGAC 59 NA Rattus norvegicus 81 Rap1gap2 ENSRNOG00000002652 ENSRNOT00000065045 3 1 2 100 10 61209961 61209979 TCGGTGTACACCACTTTCC 60 61207914 61209899 CCAATATGTCGCTTTCTCTGC 60 NA Rattus norvegicus 81 Gtf2ird2 ENSRNOG00000001482 ENSRNOT00000002030 3 1 3 86 12 25511226 25513253 GACTTGAACTCAGTAATGTGGG 59 25511161 25511179 CGAAGAAATACGCTCGCTC 59 NA Rattus norvegicus 81 Tbc1d24 ENSRNOG00000052204 ENSRNOT00000081995 3 1 2 80 10 13557347 13557366 ATTCAGCTCTTGCAAATGGC 60 13556030 13557306 GTGTACAAACTGCCTCTTCTG 59 NA Rattus norvegicus 81 Plekhg5 ENSRNOG00000022694 ENSRNOT00000064841,ENSRNOT00000084487,ENSRNOT00000082586 2 3 3 80 5 169285362 169285380 ACGAAGGTCATCAGACCAC 59 169285423 169285524 GATGAGGAGGAAGGAACCAG 60 NA Rattus norvegicus 81 RGD1563815 ENSRNOG00000029979 ENSRNOT00000083190,ENSRNOT00000058343 1 2 2 80 20 13606634 13607570 TGCAGATGACCATCTCCAC 60 13606572 13606596 CTCATATCTTTGTCTAAAGCCACTC 60 NA Rattus norvegicus 81 Thrb ENSRNOG00000006649 ENSRNOT00000008989,ENSRNOT00000008752,ENSRNOT00000061402,ENSRNOT00000085322 1 4 4 80 15 8895308 8898163 GATGTCTTCAGATCGCCCA 60 8895246 8895264 TGTTCAAAGGCCAACAGGA 60 NA Rattus norvegicus 81 Naa35 ENSRNOG00000018417 ENSRNOT00000025096,ENSRNOT00000090032 1 2 2 80 17 5429959 5432558 CTCTGTTACAAACTACTTTCCTCG 60 5429902 5429920 GGGCATCTTTCACCATGTC 59 NA Rattus norvegicus 81 Tmem180 ENSRNOG00000019674 ENSRNOT00000043925,ENSRNOT00000088243 2 2 2 81 1 266113999 266114018 TACGTGGACACCTTTGTCTC 60 266114056 266114524 TATTCCAGAGGAGAAATACAGTCTC 60 NA Rattus norvegicus 81 Il1rap ENSRNOG00000001928 ENSRNOT00000002645 3 1 2 111 11 77474831 77474849 AAGAGGAGTTTGTGCTGCT 60 77472109 77474758 GTCTCATCTGTGACAATTCCC 59 NA Rattus norvegicus 81 Slc4a7 ENSRNOG00000005957 ENSRNOT00000008759,ENSRNOT00000049771 1 2 3 141 15 11874676 11878821 TACTGACTTCACTCCAGGG 58 11872508 11874573 CATGTCAACCTTGCTAAAGTC 58 NA Rattus norvegicus 81 Kcnn4 ENSRNOG00000019440 ENSRNOT00000077952 2 1 2 85 1 81244834 81245479 CATAGCTGCCTGTTATCGA 57 81245528 81245546 GATGTCCTTGAGCTCAGTC 58 NA Rattus norvegicus 81 Fstl1 ENSRNOG00000002746 ENSRNOT00000091057 3 1 2 82 11 65797621 65799296 CAACAAACTGCTCAGAGGC 60 65797557 65797576 CTTGGAAGCTGAGTTTCCAG 59 NA Rattus norvegicus 81 Fry ENSRNOG00000000894 ENSRNOT00000076483 1 1 4 80 12 5575502 5575521 GAGATCCGAGACATGATCCG 60 5574965 5575459 TAGTGCCGGAAACATGGAG 60 NA Rattus norvegicus 81 Fry ENSRNOG00000000894 ENSRNOT00000077167 1 1 4 85 12 5685404 5685429 CACATGGACGATGTACTGC 59 5685328 5685347 ACATTCTCTTCCCTCCAGTC 59 NA Rattus norvegicus 81 Mpp4 ENSRNOG00000010486 ENSRNOT00000014094 1 1 2 80 9 65939826 65939847 ATGAAGATTGACGAGAAGTGTG 59 65931121 65934324 AAATTCCTCTTTAGCTTCTGCG 59 NA Rattus norvegicus 81 Asb3 ENSRNOG00000032471 ENSRNOT00000067393 2 1 2 99 14 115443073 115443095 CTAATTGGAAGAGACCTCCAG 58 115445936 115445955 GTTAGACTTGGAACAGAGGC 58 NA Rattus norvegicus 81 Nfyb ENSRNOG00000010309 ENSRNOT00000066143,ENSRNOT00000082398 1 2 2 80 7 27089363 27089384 GCTTCTCAACTAGGGATTTCTG 59 27089424 27091023 GCTGTCCTCAGTATCATCGT 59 NA Rattus norvegicus 81 Nfyb ENSRNOG00000010309 ENSRNOT00000066143,ENSRNOT00000082398 2 2 2 80 7 27094810 27095466 GGCATTCACTAACCAGTTACC 59 27095508 27095526 TAGGACGTCGTGTAAACCA 58 NA Rattus norvegicus 81 S100a8 ENSRNOG00000011557 ENSRNOT00000015473 3 1 1 62 2 190073944 190073963 AATGGTCACTACTGAGTGCC 60 190074150 190074169 TCTTTGAACAAGCTTTCGGT 58 NA DesignNoJunction Rattus norvegicus 81 Pdhb ENSRNOG00000007895 ENSRNOT00000083212,ENSRNOT00000010545 1 2 2 80 15 18543723 18544075 CGTGATGATAATCCAGTGGTG 59 18544117 18544135 TGATTGAGCTTCTGTGGGA 59 NA Rattus norvegicus 81 Pdhb ENSRNOG00000007895 ENSRNOT00000083212,ENSRNOT00000010545 2 2 2 80 15 18546076 18546334 CGAGAATTATGGAAGGCCCT 60 18546377 18546395 AAGGCATAGGGACATCAGC 60 NA Rattus norvegicus 81 Mxra8 ENSRNOG00000019244 ENSRNOT00000091205,ENSRNOT00000067252 1 2 2 80 5 173288635 173289542 GTGCTTCTTCAGAGTTCTGC 59 173289680 173289698 AGACTCAGACACCACAGAG 58 NA Rattus norvegicus 81 Mpv17l ENSRNOG00000003285 ENSRNOT00000090166,ENSRNOT00000004384,ENSRNOT00000086929 3 3 3 85 10 3342553 3360959 CTGGAATACATATAAGACTGGTCTG 59 3361169 3361187 CTGTCCTCCAGTTCACAGG 60 NA Rattus norvegicus 81 Map2k5 ENSRNOG00000007926 ENSRNOT00000010991 2 1 3 126 8 68114180 68154064 GGATCTCTTTCATGGAGATTCAG 59 68092093 68092111 AAATGTACAAACGGCTCCG 59 NA Rattus norvegicus 81 Prdm8 ENSRNOG00000002004 ENSRNOT00000002746,ENSRNOT00000071706 1 2 2 80 14 13056813 13056833 TTGGTATGGGAAAGAACTGAC 58 13056377 13056771 GTGTAAGGAGATGACCCGT 59 NA Rattus norvegicus 81 Adh4 ENSRNOG00000046357 ENSRNOT00000090253 2 1 3 81 2 243736953 243736972 AGTCCTCATCGAGATGACAG 59 243737016 243738141 GGACAATGGCTTCATGACC 59 NA Rattus norvegicus 81 Atp6v0c ENSRNOG00000006542 ENSRNOT00000008736 2 1 1 158 10 13541901 13541920 GCTGACATCAAGAACAACCC 60 13537961 13537979 CTTCATGATCAGCTCTGGC 58 NA DesignNoJunction Rattus norvegicus 81 Ccnl2 ENSRNOG00000018691 ENSRNOT00000025531,ENSRNOT00000089936 2 2 3 80 5 173257588 173257819 CATTCCATGGAGCATGTGTC 59 173257860 173257880 GACATCTCTGATTCGTCTTGG 59 NA Rattus norvegicus 81 Cep76 ENSRNOG00000021918 ENSRNOT00000090078,ENSRNOT00000029431 3 2 2 80 18 63388241 63388260 GGAATGGAGATCTGTTCTGG 58 63384948 63388199 TTTGATTCTGTGCCTACACC 58 NA Rattus norvegicus 81 Tsc22d1 ENSRNOG00000001030 ENSRNOT00000001360 1 1 2 90 15 58655214 58655638 TTGACAATAGCTCTGGTGC 58 58656854 58656873 ACTGCATACATCAAATGGCT 58 NA Rattus norvegicus 81 Caprin2 ENSRNOG00000047319 ENSRNOT00000073927 3 1 3 83 4 183344292 183346868 GTAGAGCCCAAAGATGTGC 59 183344227 183344246 TTTCCTCAATGCTGGATCCT 59 NA Rattus norvegicus 81 Pax6 ENSRNOG00000004410 ENSRNOT00000005882,ENSRNOT00000006302,ENSRNOT00000089525 3 3 3 80 3 95723752 95723964 AAGCAAGGATACAGGTGTG 58 95724008 95724026 CCTGTCTTCTCTGGTTCCT 58 NA Rattus norvegicus 81 Sec23a ENSRNOG00000004657 ENSRNOT00000006369,ENSRNOT00000084611 2 2 2 80 6 80078310 80078328 ATACAGAGCGGAGACAGAG 58 80074106 80078267 CCAAATTTCTGACACAGTCG 57 NA Rattus norvegicus 81 Dnajb2 ENSRNOG00000019506 ENSRNOT00000081958 2 1 2 82 9 82437534 82437555 ACCCGGATAATAAAGAGTTTGC 59 82437598 82439124 CCGTTTGTGCTTGTCAGAC 60 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000077505,ENSRNOT00000008319 1 7 9 94 4 14186527 14186545 CATACTGGTCAAGCCAGCT 60 14187108 14188060 TGGTCCCAGTCTCATTTAGC 60 NA Rattus norvegicus 81 LOC500990 ENSRNOG00000038867 ENSRNOT00000077748 2 1 2 95 8 50602411 50603527 GGACACTTGGAGACATGGA 59 50602334 50602353 TAAAGATGGCTGACACTGGG 60 NA Rattus norvegicus 81 LOC100911833 ENSRNOG00000037188 ENSRNOT00000081488 2 1 6 80 4 154553985 154554005 AGTCGATGATGAAATCACCCT 59 154554047 154554801 ACAACGGGATCTGTGTCTG 60 NA Rattus norvegicus 81 Snx11 ENSRNOG00000008642 ENSRNOT00000089146 2 1 3 112 10 84637058 84637775 ACATCCTCTAAGAGCCAGC 59 84636031 84636050 TTCTCCAACATCCTACACCA 58 NA Rattus norvegicus 81 Me3 ENSRNOG00000017311 ENSRNOT00000087067 3 1 2 103 1 154054142 154054161 ACAATGCCTATGTGTTTCCC 59 154054227 154056364 ATAGTCGAGGACCTCTGCT 60 NA Rattus norvegicus 81 Slc9c2 ENSRNOG00000026797 ENSRNOT00000035113 2 1 4 80 13 79065952 79065970 GTGATCAACAGCAAGACGG 59 79066013 79066961 TGAAATTCCCTGGATCTGCT 59 NA Rattus norvegicus 81 Asic1 ENSRNOG00000059765 ENSRNOT00000084075 1 1 3 82 7 141347003 141348665 TCTCAGTGGTCTTCACTCG 59 141348711 141348729 TTTCATGGTCTTCAGCCGT 60 NA Rattus norvegicus 81 Nhsl2 ENSRNOG00000037951 ENSRNOT00000076971 1 1 4 71 X 71961129 71961147 TGTAGAGGAACTGCTTCGC 60 71965794 71965812 TGTCTATCAAACTGCTGCC 58 NA DesignNoJunction Rattus norvegicus 81 LOC691286 ENSRNOG00000002845 ENSRNOT00000084984 3 1 2 85 10 43885486 43891530 GCAAGACTTCCGACTTCTG 59 43885419 43885437 ACACTTGAGACCACTGGAG 59 NA Rattus norvegicus 81 Igdcc4 ENSRNOG00000033496 ENSRNOT00000067016 1 1 2 80 8 70611405 70611424 GAGTGTAGTGTTGGAGTGTG 58 70611466 70612239 GAAATAGGCTTCCCATCCTG 58 NA Rattus norvegicus 81 Ttbk2 ENSRNOG00000011059 ENSRNOT00000066181 1 1 2 80 3 112713639 112716596 GGAACAGGGAGCAAGTAGG 60 112713577 112713595 TGCTGAATTCTGGAGGGAG 59 NA Rattus norvegicus 81 Atp5c1 ENSRNOG00000019223 ENSRNOT00000025993,ENSRNOT00000090453 2 2 4 82 17 72247454 72356850 CTCAAGAAGAGGAGGAAGAGG 59 72356894 72356912 ATCTTCTTCCAAGGGCACC 60 NA Rattus norvegicus 81 RT1-T18 ENSRNOG00000030666 ENSRNOT00000088029,ENSRNOT00000080406 2 2 4 87 20 3119760 3119778 AGGACCTACTTAGAGGGCC 60 3119828 3121527 TTGGAGGATCTGTACACTGC 60 NA Rattus norvegicus 81 RT1-T18 ENSRNOG00000030666 ENSRNOT00000061395 1 1 4 80 20 3120562 3120583 CTCTTAACTGCTGAACCATCTC 59 3120620 3121527 TTGGAGGATAATCTCAGAACAGG 60 NA Rattus norvegicus 81 Sh3pxd2a ENSRNOG00000020353 ENSRNOT00000027574 1 1 2 86 1 267143237 267143255 TTTCGGTTCTTTGAGGCAC 59 267098852 267122322 GGATAACCACACTGATTTCCT 58 NA Rattus norvegicus 81 Rpl34 ENSRNOG00000016387 ENSRNOT00000005772 1 1 2 86 2 235852161 235852181 GACAAAGAAGCACCAGCAG 60 235850392 235850410 TCCTCGATAAGGAAAGCCC 59 NA Rattus norvegicus 81 LOC100910568 ENSRNOG00000047594 ENSRNOT00000070825,ENSRNOT00000071829 3 2 3 80 17 66481695 66481861 CCAGAAGAACTGGAAGAACC 58 66481903 66481922 AGCTCTTCCTTCTTCATCAC 57 NA Rattus norvegicus 81 Dmrtc1a ENSRNOG00000048295 ENSRNOT00000074259 1 1 1 69 X 72650794 72650812 GTTGACACAGCAACTCAGC 60 72651068 72651086 ATGTTGTTTCTGGGAGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Casr ENSRNOG00000002265 ENSRNOT00000003092,ENSRNOT00000078341,ENSRNOT00000086097 3 3 3 81 11 67251993 67252011 GCCAAGAAGGGAGAAAGAC 58 67252056 67254315 AATTGGAGAAAGGCACCTC 58 NA Rattus norvegicus 81 Ubap2l ENSRNOG00000017990 ENSRNOT00000024364 1 1 2 85 2 189337102 189337122 CCTTTATGCACATTCTGACCC 59 189336618 189337055 ATATGGTAGCTGGCCATCC 59 NA Rattus norvegicus 81 Dach2 ENSRNOG00000004869 ENSRNOT00000006907 2 1 2 113 X 85465766 85465784 AGCTACATCTGGTGACAGC 60 85467505 85483679 TAGTTACCTCCTTGCATAGCAG 60 NA Rattus norvegicus 81 Apmap ENSRNOG00000006795 ENSRNOT00000091310 3 1 3 124 3 146396287 146407087 GAGGGCAGTTCCTTTAGTG 58 146396181 146396202 CTGAAACTCTGAGGATCTATGG 58 NA Rattus norvegicus 81 Larp4b ENSRNOG00000015888 ENSRNOT00000077471 2 1 2 80 17 63273006 63273025 CCCTTTATCAGCTACCAGTG 58 63273066 63278529 TAGTTGTTGGGACTAACTGTC 57 NA Rattus norvegicus 81 Rsph9 ENSRNOG00000019474 ENSRNOT00000068747,ENSRNOT00000080816 2 2 2 81 9 17225332 17225353 CTTGTCGCAGATTACTACATCG 59 17225395 17227329 TGCAGTTCAGGCTGTAGAG 59 NA Rattus norvegicus 81 Ednra ENSRNOG00000012721 ENSRNOT00000058162,ENSRNOT00000080095,ENSRNOT00000078395,ENSRNOT00000080317 1 4 6 114 19 33932968 33965639 TGTGTTTAAGCTGTTGGCG 59 33965717 33965735 ATTCAGGACAGTGATGCCC 60 NA Rattus norvegicus 81 Gria3 ENSRNOG00000007682 ENSRNOT00000029031 1 1 2 98 X 127804673 127804691 AACTGAATGAGCAAGGCCT 60 127804753 127822350 TGGTCTTGTCCTTGGAGTC 59 NA Rattus norvegicus 81 Psmd11 ENSRNOG00000005538 ENSRNOT00000079156 2 1 2 82 10 67854604 67854622 ATTTGGCCAAGTTGTACGA 58 67854668 67855063 GTGTTCGATCTGTACTCGG 58 NA Rattus norvegicus 81 Rcl1 ENSRNOG00000015491 ENSRNOT00000048910,ENSRNOT00000083511 1 2 3 80 1 247291656 247291674 CTCTTAAGCTCCTGCAGGT 59 247291718 247295975 CTGACTTCTGCATCCCTCC 60 NA Rattus norvegicus 81 RGD1307461 ENSRNOG00000015718 ENSRNOT00000084120,ENSRNOT00000021188 1 2 2 91 8 116096803 116096822 CATCACAGTGATTGGTCTGG 59 116101241 116101259 ACATAGGCATGAGCTGGTG 60 NA DesignNoJunction Rattus norvegicus 81 Vipas39 ENSRNOG00000049223 ENSRNOT00000073428 1 1 2 85 6 111286933 111286951 GCCTAAGGGAGAGTACAGG 59 111283008 111284761 AGATCAGAACCTTGCCCTG 59 NA Rattus norvegicus 81 Aifm1 ENSRNOG00000006067 ENSRNOT00000008503 1 1 2 80 X 135327984 135333589 GGTGCATATGCCTACAAGAC 59 135327923 135327943 TTCTGGTGACAGTCCTAATCC 59 NA Rattus norvegicus 81 Hdac9 ENSRNOG00000004158 ENSRNOT00000005521 2 1 2 81 6 53524731 53524750 ATGTTCTCCACCAGTCTGTG 60 53506438 53524690 GACTTCCAATACTTGCTTTGGA 59 NA Rattus norvegicus 81 Ahsg ENSRNOG00000038370 ENSRNOT00000058422 1 1 2 80 11 81714557 81714578 CCTTCAATGCACAGAATAATGG 58 81713699 81714516 CAGAACAACCTATCGGCAC 59 NA Rattus norvegicus 81 Fam162a ENSRNOG00000002255 ENSRNOT00000087054 3 1 3 98 11 67642219 67642237 AAAGAACAAGATCCGGGTG 58 67642299 67642479 CTCAGAAGAGCCTTCTTGC 58 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000076450,ENSRNOT00000076503,ENSRNOT00000088114 2 3 7 93 X 70637669 70641182 ATACAGGAACAGGGAGTGAC 59 70642436 70642455 GTGTCACTGGCTCATATGAC 59 NA Rattus norvegicus 81 St8sia5 ENSRNOG00000022691 ENSRNOT00000077679 2 1 2 87 18 73585359 73585377 CAACAGGCCAATTGGACTG 59 73585427 73603597 ATTCGAAGTACCTGGAGCTG 60 NA Rattus norvegicus 81 Lmo4 ENSRNOG00000009205 ENSRNOT00000077221,ENSRNOT00000067502,ENSRNOT00000088618,ENSRNOT00000082132 1 4 4 77 2 250224581 250224599 AGGCAACGTGTATCATCTC 57 250224164 250224182 TAGTGAAACCGATCTCCCG 59 NA DesignNoJunction Rattus norvegicus 81 Lmo4 ENSRNOG00000009205 ENSRNOT00000077221,ENSRNOT00000067502,ENSRNOT00000088618,ENSRNOT00000082132 2 4 4 78 2 250224581 250224599 AGGCAACGTGTATCATCTC 57 250224163 250224181 GTAGTGAAACCGATCTCCC 57 NA DesignNoJunction Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000081940 1 1 6 88 17 77195636 77195654 TAAGTCACAGGCGTTCCAG 60 77195706 77195726 ACTCGGATGCACATCAGAG 60 NA Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000042881,ENSRNOT00000083342 1 2 6 80 17 77185135 77189000 GGAGATCAGGATGACTGAAGG 60 77189042 77189060 GAGTCTGTCCTTGTGGGTC 60 NA Rattus norvegicus 81 Phf5a ENSRNOG00000024170 ENSRNOT00000090984 1 1 2 180 7 123100631 123101804 TGTAGGTGATGGCAAATGTG 59 123095891 123100490 ACCATCTCTATCCTTCTCCTG 58 NA Rattus norvegicus 81 Gsk3a ENSRNOG00000020417 ENSRNOT00000027677 3 1 2 80 1 82099605 82099624 TCAATGCCATTCTCATCCCT 59 82097910 82099564 CAGTTAAAGCTTGTGAGGACG 60 NA Rattus norvegicus 81 Phactr2 ENSRNOG00000015473 ENSRNOT00000048754 2 1 2 87 1 7371237 7371255 GTGGAAGTCACAGATTCCC 58 7364147 7371186 TCCTTATTGCTGCCTTGTC 58 NA Rattus norvegicus 81 Ube2a ENSRNOG00000039985 ENSRNOT00000061455 1 1 2 80 X 123487409 123487428 TCGGAGAACAACATAATGGT 57 123487852 123493323 TTCCACATGTGTACCATCC 57 NA Rattus norvegicus 81 Picalm ENSRNOG00000018322 ENSRNOT00000084268,ENSRNOT00000025415 1 2 4 84 1 154442128 154444800 GCAACAATGAATGGCATGC 59 154446188 154446206 ATCCTATCATGCCCGTTGG 60 NA Rattus norvegicus 81 Picalm ENSRNOG00000018322 ENSRNOT00000084268,ENSRNOT00000025415 2 2 4 85 1 154442128 154444800 GCAACAATGAATGGCATGC 59 154446188 154446207 TATCCTATCATGCCCGTTGG 60 NA Rattus norvegicus 81 Arnt ENSRNOG00000031174 ENSRNOT00000091681 2 1 3 151 2 196638216 196638310 AAGTAACCAGTTCTCCTAACTG 58 196638421 196641478 CTTTCCTAAGAGCTCCTGTG 58 NA Rattus norvegicus 81 Capn5 ENSRNOG00000014251 ENSRNOT00000019370 1 1 2 140 1 163114613 163114631 TTACTCAGCTCTGAAGCGG 60 163103732 163114509 TCGCAGATATCCTTAGGCC 59 NA Rattus norvegicus 81 Mark1 ENSRNOG00000002339 ENSRNOT00000003198 3 1 2 99 13 102858938 102913729 CGGAGAACCATACATCTGTG 58 102858858 102858878 GTAATGGAGTTTCTACACCGG 59 NA Rattus norvegicus 81 Plcb1 ENSRNOG00000004810 ENSRNOT00000051184,ENSRNOT00000006389 1 2 2 80 3 128336308 128336428 CTGCGAGAAAGAGAAGAAGG 58 128336471 128336489 TCTTTGGACTTGGCTTCTG 58 NA Rattus norvegicus 81 Myof ENSRNOG00000016117 ENSRNOT00000021546 2 1 2 80 1 256664565 256664584 AAATGATGTAGTTGGGACGA 57 256660619 256664523 TCTCCTGTATTTGCTTCCAC 58 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000091840 1 1 10 89 7 117253868 117268109 CCTCAAAGATGAACGAGACC 58 117253489 117253507 TCACTGATGTGCCTTTGAG 58 NA Rattus norvegicus 81 Fcar ENSRNOG00000027855 ENSRNOT00000087826,ENSRNOT00000029621 1 2 2 80 1 73262721 73264249 CCTTCCTATGTCTTGTGATCTG 58 73252064 73252083 TTGCAGTGGATATGATGGGA 59 NA Rattus norvegicus 81 Pik3ap1 ENSRNOG00000013309 ENSRNOT00000065632 3 1 3 166 1 260552335 260557893 ATTTCTAAAGAGCCGCTTGTG 59 260552189 260552207 TCTTTGAAGTGCAGCACAG 59 NA Rattus norvegicus 81 Cpg1 ENSRNOG00000060278 ENSRNOT00000078938 1 1 1 78 6 123034539 123034557 CCAGAGAAGAGGATGAGGG 59 123042373 123042393 GAATAACTGACTCCTCGACTG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Macf1 ENSRNOG00000016047 ENSRNOT00000091828 3 1 4 107 5 141075461 141076134 GTCTGCTCAGATTGCAGAG 58 141074526 141074545 TCTACTTCAGCAGGGATCAG 59 NA Rattus norvegicus 81 Muc15 ENSRNOG00000004703 ENSRNOT00000079600,ENSRNOT00000006256 3 2 2 83 3 101908247 101910817 ACAGAAACGAACCAGTTCTG 59 101910857 101910881 CTCGGTTGTAGTAACTAGAATTTCC 59 NA Rattus norvegicus 81 Impa2 ENSRNOG00000018516 ENSRNOT00000025147,ENSRNOT00000081432 3 2 3 81 18 63016855 63029868 CGGGACAAATCATCAGAAAGG 59 63029909 63029929 GTTTCTGTCACAAGATCTGCA 59 NA Rattus norvegicus 81 Trrap ENSRNOG00000025244 ENSRNOT00000091346 1 1 3 148 12 11544123 11544141 CTACTATGACAGGCTGGCC 60 11540848 11543581 GAATGTCTCGGAGGACCTG 60 NA Rattus norvegicus 81 Tcp10b ENSRNOG00000013374 ENSRNOT00000077340 3 1 2 94 1 53536311 53539501 CAGGGAGAACATTGTACATACG 59 53539556 53539574 TTGAGGACTTCCAGAAGGC 59 NA Rattus norvegicus 81 Mrpl54 ENSRNOG00000020464 ENSRNOT00000027737 1 1 1 72 7 11322221 11322239 CAGACTCTGAGTACCCGAC 59 11323315 11323333 GGTTCTAGGTCCTCTAGCT 57 NA DesignNoJunction Rattus norvegicus 81 Cdk12 ENSRNOG00000006000 ENSRNOT00000008256 1 1 2 80 10 86204829 86204847 TGACAAGAATAGTGGGCCA 59 86204891 86208986 ATGTGAGGAGGACATGCTG 60 NA Rattus norvegicus 81 Psg16 ENSRNOG00000042250 ENSRNOT00000088925,ENSRNOT00000058060 1 2 3 80 1 79066942 79077380 TATATCTCTACGTGTACAGCTCAC 60 79077416 79077437 GTGGCACTGATTCAATACTGAG 60 NA Rattus norvegicus 81 Phf14 ENSRNOG00000005775 ENSRNOT00000089897 2 1 3 80 4 38338324 38338345 AAGGCTGAAGACTTAAGAACTG 58 38338384 38378652 AGACAATCTCATCCTGACGAG 59 NA Rattus norvegicus 81 Rnf19b ENSRNOG00000000123 ENSRNOT00000089457 1 1 2 80 5 147257819 147257838 TCAGACATTACGAGTTCGGA 59 147257881 147259599 CACGGCTTGATGTCATCTG 59 NA Rattus norvegicus 81 Gtf3c2 ENSRNOG00000056904 ENSRNOT00000077481,ENSRNOT00000079292 2 2 2 89 6 26572307 26572325 TACTGCTGTTCAGTCTGCC 60 26573758 26574106 AACACTGGACCTTGTAGATGG 60 NA Rattus norvegicus 81 Tcte3 ENSRNOG00000015293 ENSRNOT00000078312,ENSRNOT00000047157 2 2 2 86 1 56982501 56982519 CACCCAAACGCATCAATCC 60 56976087 56982456 CTTAAGATCTGTGCATATGACTCC 59 NA Rattus norvegicus 81 Mtus2 ENSRNOG00000032410 ENSRNOT00000085869,ENSRNOT00000064721 3 2 2 85 12 8116098 8116116 AGATCCAGGTACTCCAGCA 60 8114411 8116049 TTCCTCCGACAGTTGTCTG 59 NA Rattus norvegicus 81 Frmd4a ENSRNOG00000018500 ENSRNOT00000045765,ENSRNOT00000081645 1 2 2 80 17 77686401 77686421 TAATCAAGTCTATCTGGGCGA 59 77680010 77686362 CATGGATCTTGGACTTACTCTG 58 NA Rattus norvegicus 81 Frmd4a ENSRNOG00000018500 ENSRNOT00000081645 2 1 2 80 17 77647643 77647663 AACACCGTCAAGTGAAATTGG 60 77645516 77647602 TCTGTTGCTTCTCCAGTCTG 60 NA Rattus norvegicus 81 Ovol1 ENSRNOG00000020669 ENSRNOT00000028081 1 1 2 110 1 220931603 220938418 AGATCTACGTGCCAGTCAG 59 220931511 220931529 GAAGGCTCATGTCCAAAGC 59 NA Rattus norvegicus 81 Ovol1 ENSRNOG00000020669 ENSRNOT00000028081 2 1 2 116 1 220931603 220938418 AGATCTACGTGCCAGTCAG 59 220931505 220931523 AGTCTCGAAGGCTCATGTC 59 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000087739,ENSRNOT00000079919,ENSRNOT00000086226,ENSRNOT00000089099,ENSRNOT00000078830,ENSRNOT00000080888 2 6 7 81 5 166101437 166116420 AACTCGACCAGTATTATCAACC 58 166101377 166101398 TGTGAGACCAGTAAGAGTAGTC 59 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000087739,ENSRNOT00000079919,ENSRNOT00000086226,ENSRNOT00000089099,ENSRNOT00000078830,ENSRNOT00000080888 1 6 7 80 5 166101436 166116419 ACTCGACCAGTATTATCAACCC 60 166101377 166101398 TGTGAGACCAGTAAGAGTAGTC 59 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000087739,ENSRNOT00000089099 2 2 7 94 5 166072413 166075276 GGAAGTGGAGGCAAATATCTG 59 166072339 166072357 GCTGTGGAGAAATTGCCAG 60 NA Rattus norvegicus 81 Acvrl1 ENSRNOG00000028713 ENSRNOT00000008673,ENSRNOT00000081047 1 2 2 95 7 142779168 142779393 ACATCCTAGGCTTCATCGC 60 142779452 142779470 CATAGAGGGAGCCATGCTC 60 NA Rattus norvegicus 81 Rbfa ENSRNOG00000055647 ENSRNOT00000080478 2 1 2 81 18 76710805 76710918 CTCACGAAGAACACTGAGC 59 76710238 76710256 GGCTGAGAAGTCTGGAGTC 60 NA Rattus norvegicus 81 Gbgt1 ENSRNOG00000039906 ENSRNOT00000006553,ENSRNOT00000074271 3 2 2 84 3 5121016 5121038 GGATGTCCAGAAAGTTGTAAGTG 60 5122313 5122998 GACAAGAACATCATTCCTAATGGG 60 NA Rattus norvegicus 81 Galns ENSRNOG00000014461 ENSRNOT00000079641,ENSRNOT00000019528 2 2 2 80 19 55417369 55422943 TGCTCATGGACGATATGGG 59 55417307 55417326 CCATCCGGTCTAAATTTGGG 59 NA Rattus norvegicus 81 Rdh16 ENSRNOG00000029651 ENSRNOT00000051075 1 1 3 80 7 71065582 71069218 AGTTGGGAACACAGGACTC 59 71069260 71069280 TTGTTCATCCACTCATTGGGA 60 NA Rattus norvegicus 81 Srebf1 ENSRNOG00000003463 ENSRNOT00000047053 1 1 2 94 10 46579433 46592846 CATCGAAGACATGCTTCAGC 60 46579358 46579376 CTGTGTCTCCTGTCTCACC 59 NA Rattus norvegicus 81 Cd226 ENSRNOG00000038197 ENSRNOT00000058152,ENSRNOT00000091778 3 2 2 80 18 86365384 86383889 GATCATAACTGATGGTGGAACC 59 86383928 86383948 AGGATGACAAGTAGCAGTGAG 60 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000025045 2 1 10 82 9 95296578 95298733 CTATCCCAGGAATTTGAAGCC 59 95298777 95298795 TCTGAGACCATGGATCCCA 60 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000032634,ENSRNOT00000077416,ENSRNOT00000045163 1 3 10 81 9 95246250 95298734 TGTCTCAGGAATTTGAAGCCT 60 95298777 95298795 TCTGAGACCATGGATCCCA 60 NA Rattus norvegicus 81 Btbd7 ENSRNOG00000008598 ENSRNOT00000064914,ENSRNOT00000081127 2 2 2 87 6 126710723 126710746 GTGCTAATGCATCTAACTATCCTC 59 126708771 126710682 GAAGATGTTCCTATGAAAGTCTGC 60 NA Rattus norvegicus 81 Ddr1 ENSRNOG00000057125 ENSRNOT00000083223,ENSRNOT00000089417,ENSRNOT00000085380,ENSRNOT00000085635 1 4 6 80 20 3565651 3566906 ATATACTGCTGGAGGGCTG 59 3566949 3566968 CTCTGCCTGAAATCATCCAG 59 NA Rattus norvegicus 81 Pacsin2 ENSRNOG00000009756 ENSRNOT00000013428 3 1 4 80 7 124223892 124225790 GAAGATGAACAGGGTCCCA 59 124223830 124223848 TTAGCTGATCCCAATGGGA 58 NA Rattus norvegicus 81 Slc16a10 ENSRNOG00000000588 ENSRNOT00000000718,ENSRNOT00000087226 2 2 2 108 20 45189546 45189564 AACTTTGCCCTCTTCAAGG 58 45158830 45189477 CCTTTACATGGTTCATCAAGTG 58 NA Rattus norvegicus 81 Slc16a10 ENSRNOG00000000588 ENSRNOT00000000718,ENSRNOT00000087226 3 2 2 112 20 45158781 45158799 TGCTCTTCATGTGCATTGG 59 45147741 45158705 GAAGAAGGAGAGGACCTGC 60 NA Rattus norvegicus 81 Slc12a6 ENSRNOG00000005196 ENSRNOT00000007144 2 1 2 84 3 103753443 103753461 CTTCTCTGGCAACTGTTGC 60 103753509 103806659 GAGTTCTGATTCGGGTCCT 59 NA Rattus norvegicus 81 Slc12a6 ENSRNOG00000005196 ENSRNOT00000079727 2 1 2 106 3 103773681 103773699 TAGAAGACCCAGAGGAGGG 59 103773769 103806657 GTTCTGATTCGGGTCTGGT 59 NA Rattus norvegicus 81 Suco ENSRNOG00000026542 ENSRNOT00000087323,ENSRNOT00000084058 3 2 4 120 13 79740181 79744857 GGCAAAGAAGTAGACCCGA 59 79738393 79738414 GATCTGCAGGCTTTATTGTCTC 60 NA Rattus norvegicus 81 Lrrc8a ENSRNOG00000025296 ENSRNOT00000033934,ENSRNOT00000078932 1 2 2 81 3 8823059 8827556 ACAGCCAATAGGATCGAGG 59 8827601 8827619 GAACATTGTTGCCCAGGTG 60 NA Rattus norvegicus 81 Mprip ENSRNOG00000003226 ENSRNOT00000040865,ENSRNOT00000004357 1 2 3 80 10 46085366 46085384 CCTCTGCATCCTAACACCT 59 46085428 46089139 AGCATCTCTAACCACCCAC 59 NA Rattus norvegicus 81 Cacnb2 ENSRNOG00000018378 ENSRNOT00000066826,ENSRNOT00000031542 3 2 2 80 17 81995442 81995461 CATCATCCAGTTTGGGTGAC 59 81995499 81999522 CAGTAGCATCTATGTCTATAGCAG 58 NA Rattus norvegicus 81 Prkcd ENSRNOG00000016346 ENSRNOT00000025858 1 1 2 89 16 6659378 6659396 CTCTTTGAGTCCATCCGGG 60 6658843 6659325 CCTCTCGAAGAGCTTCTCC 59 NA Rattus norvegicus 81 Pde7b ENSRNOG00000013436 ENSRNOT00000078586 3 1 2 83 1 15974756 16109246 CATGCTAGGAGATGTACGAC 58 15974692 15974710 AGACGGAAGTCAATGAACG 58 NA Rattus norvegicus 81 Bclaf1 ENSRNOG00000058050 ENSRNOT00000088025 1 1 5 113 1 15844720 15844911 AGAACAAACCTTACCCACAG 58 15844987 15845005 GTTCTGACTTAGAGCAGGG 57 NA Rattus norvegicus 81 Crebrf ENSRNOG00000020769 ENSRNOT00000079462,ENSRNOT00000028186 1 2 2 80 10 16724114 16724133 AGGAGGAAGAAGAGGAAGAG 58 16712059 16724072 TTTCATAGCCTGGTTCAGAG 57 NA Rattus norvegicus 81 Crebrf ENSRNOG00000020769 ENSRNOT00000079462,ENSRNOT00000028186 2 2 2 80 10 16725145 16727753 GATTTCATGTATGAGCTGGATAGAG 59 16725089 16725110 TTTGCAGTCTTCCAAAGAAAGG 60 NA Rattus norvegicus 81 Ncam1 ENSRNOG00000031890 ENSRNOT00000047666 3 1 4 85 8 53855023 53858139 AAGTACAGAGCGAAGCTCG 60 53854956 53854975 TCTAGGGACTTGAGCATGAC 59 NA Rattus norvegicus 81 Tep1 ENSRNOG00000051706 ENSRNOT00000088981,ENSRNOT00000079506 1 2 2 80 15 27773200 27773458 TTTCCTTAGCTCTGTGCCA 59 27773138 27773156 AGTTCTGAGACCCGATGTG 59 NA Rattus norvegicus 81 Kalrn ENSRNOG00000001706 ENSRNOT00000016340 1 1 2 104 11 69837670 69837688 GTAGAGGATGGTGACAGCC 60 69837756 69856144 GTTGCCATCCTTGTCACTC 59 NA Rattus norvegicus 81 Kpna6 ENSRNOG00000000127 ENSRNOT00000087556,ENSRNOT00000000139 3 2 2 80 5 147855879 147855897 CCGTACGAGGAAAGAAGCA 60 147854577 147855839 GATACCAAGTACCTGATTTGCTC 59 NA Rattus norvegicus 81 Map3k5 ENSRNOG00000031700 ENSRNOT00000051496 3 1 2 82 1 15484259 15488401 GAAGAACACAGTGTGCACTG 60 15488446 15488464 TGCTGTCACAGCAGTAGAC 60 NA Rattus norvegicus 81 Cyp2d3 ENSRNOG00000029179 ENSRNOT00000082473 3 1 4 138 7 123634584 123634602 CCTCTTCTTCACCTGCCTC 60 123634056 123634485 CTGTTCTCTTGGTTTGAATGCA 60 NA Rattus norvegicus 81 Cd5 ENSRNOG00000020872 ENSRNOT00000086669,ENSRNOT00000065376 2 2 4 108 1 226783399 226791730 GAACACTGGCTGCTTTCTG 60 226779539 226779557 GAGCCACTTAGCATCACCT 60 NA Rattus norvegicus 81 Slc4a4 ENSRNOG00000003134 ENSRNOT00000004391 2 1 2 82 14 20481095 20488296 AACGACGATGAGAAAGATCC 58 20481032 20481050 AAACCCAGTGACTCAAGGA 59 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000089339,ENSRNOT00000079954 1 2 7 88 2 186122531 186122551 AGCACTTTAATAATGCGCTCC 60 186117950 186119088 TCTAGAGCCGTGTTCATGG 59 NA Rattus norvegicus 81 Prss36 ENSRNOG00000033343 ENSRNOT00000026587 1 1 2 80 1 199381341 199382254 GCTTGCTGGAAAGATTCTG 57 199381279 199381297 TGAGAGGGTTCTGTATCCA 57 NA Rattus norvegicus 81 RGD1310507 ENSRNOG00000009434 ENSRNOT00000052317 1 1 3 80 8 111770111 111770133 CCTATCATGGCAGAATACTATGG 58 111768487 111770073 ATAATGGGTTTGAGGATCAGC 58 NA Rattus norvegicus 81 Maml2 ENSRNOG00000005879 ENSRNOT00000087963 3 1 2 66 8 11997797 11997818 GGAAATAGTTAACCTTGGTCCC 59 12160150 12160168 AAGAAATGAGCTGTCAGGG 57 NA DesignNoJunction Rattus norvegicus 81 Fam120b ENSRNOG00000058790 ENSRNOT00000084017 2 1 2 80 1 57373855 57373875 ATCTGCATGCATTTATCGCTC 60 57373915 57382150 TGTAATCCAGCTGTAAGTGCA 60 NA Rattus norvegicus 81 Prpsap2 ENSRNOG00000002724 ENSRNOT00000003697 1 1 2 100 10 48035200 48037383 GAACCTAACAGAGAAACACGAG 59 48031548 48031566 ATGATGGTGGTGTTCACGT 60 NA Rattus norvegicus 81 Tcf4 ENSRNOG00000012405 ENSRNOT00000081797 1 1 3 93 18 65172794 65285332 GGGCTCAAATGTAGAAGACAG 59 65288766 65288784 ATAGGGAGTCCCATCTCCA 59 NA Rattus norvegicus 81 Mat2a ENSRNOG00000013520 ENSRNOT00000018170 1 1 2 88 4 100298283 100298305 GGTACTTCTCAGAAGAGTGAGAG 60 100297644 100298236 TCCAGATCCCTGACAATGAC 59 NA Rattus norvegicus 81 AABR07042571.1 ENSRNOG00000026262 ENSRNOT00000074991 3 1 2 80 19 118967 118987 TTAAGCTTGACTATGCACTCC 58 118784 118926 AGGGAGTGTAACCTTCTTGG 59 NA Rattus norvegicus 81 Strn4 ENSRNOG00000016145 ENSRNOT00000021976 1 1 2 98 1 78755918 78755936 GAATTCTTGCTGACCTCCG 59 78755997 78756342 CAAAGGAACCTTCATGAGGC 59 NA Rattus norvegicus 81 Strn4 ENSRNOG00000016145 ENSRNOT00000021976 3 1 2 100 1 78755918 78755936 GAATTCTTGCTGACCTCCG 59 78755999 78756344 GCCAAAGGAACCTTCATGAG 59 NA Rattus norvegicus 81 Cldn2 ENSRNOG00000054495 ENSRNOT00000090928 3 1 2 60 X 111131154 111131175 GAGTGAGTTCAACTCATACAGC 59 111136315 111136333 TGAGAGTTACGGTTCCCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Adgrl3 ENSRNOG00000030149 ENSRNOT00000048175 1 1 3 80 14 28659356 28659375 GTACGTGTGGAACAACTACC 59 28536241 28659315 GTGGTAGAAATCCCTGATCTG 58 NA Rattus norvegicus 81 Phykpl ENSRNOG00000048357 ENSRNOT00000086443,ENSRNOT00000059104 3 2 2 148 10 34945761 34945871 AATCTGGATGGCCAGAAGG 60 34945982 34947861 AAGAAGGCTGCAATCTTCCT 60 NA Rattus norvegicus 81 LOC100361584 ENSRNOG00000023561 ENSRNOT00000084240,ENSRNOT00000078495 2 2 3 80 4 158242387 158242406 GTCAGAGGGACAATTCTAGC 58 158242446 158244179 AGTTATTGATGACAGAACGGTC 59 NA Rattus norvegicus 81 Nudt5 ENSRNOG00000017741 ENSRNOT00000082669 2 1 2 80 17 76391273 76391292 GACAGTGACCATCAATGGAG 58 76389529 76389671 ATCACTTCCACAAACTCTCC 58 NA Rattus norvegicus 81 Triobp ENSRNOG00000059015 ENSRNOT00000087548 2 1 2 80 7 120185467 120189241 GAGGAAGGAGAATTCTGGC 58 120189285 120189303 GAGAAGTAGCCGCTTTCTG 58 NA Rattus norvegicus 81 Inpp5e ENSRNOG00000019039 ENSRNOT00000079882,ENSRNOT00000025764 2 2 2 80 3 3845413 3845433 CAAGTTTGACATTGGGAAGGA 59 3844832 3845373 TTGTATAGGACTCGGTCTGTG 59 NA Rattus norvegicus 81 Ubr7 ENSRNOG00000008108 ENSRNOT00000089601 3 1 2 86 6 126645991 126647025 AAACACAGCATGTCACCAG 59 126647071 126647093 GCTTGATAACATCTTGATCTCCC 59 NA Rattus norvegicus 81 Npap60 ENSRNOG00000013423 ENSRNOT00000018155,ENSRNOT00000080933 2 2 2 81 7 125837262 125839292 GATGAAGTTGAAGAGATGGGA 58 125839335 125839353 TACGCTTTGCCTTCTTCAC 59 NA Rattus norvegicus 81 Fam60a ENSRNOG00000049943 ENSRNOT00000071930 3 1 3 81 4 183412737 183424209 GAGGATATTTGAGCTTTGAACC 58 183412677 183412696 CAGCAGCCTTCTATACTTCG 58 NA Rattus norvegicus 81 Fgfr2 ENSRNOG00000016374 ENSRNOT00000065448 1 1 4 80 1 200671085 200692398 ACTTTAGAACCAGAAGATGCCA 60 200671026 200671047 GTTCTCACTGACAAAGTCTTCG 60 NA Rattus norvegicus 81 Ppil6 ENSRNOG00000043186 ENSRNOT00000068693 1 1 2 81 20 46236778 46236798 TGGTTCGCAATTCTACATCAC 59 46236841 46243611 TCCTTCAATGAGTTGCCCA 59 NA Rattus norvegicus 81 Papola ENSRNOG00000004827 ENSRNOT00000064957,ENSRNOT00000083732 3 2 3 80 6 129643813 129646856 CAGACACAGTTTATAGGCAAGC 60 129646895 129646915 TTCTCTTCACATGCATTGCTG 60 NA Rattus norvegicus 81 Atp7a ENSRNOG00000061367 ENSRNOT00000080141,ENSRNOT00000091527 2 2 3 80 X 77137647 77137665 ACTAACCTCTCCAGAACCC 58 77137709 77138844 GGCTCTTTCATGTCTGCTG 59 NA Rattus norvegicus 81 Parl ENSRNOG00000023271 ENSRNOT00000030837 3 1 2 80 11 84522584 84522603 AAGGAAACCTCAGAAAGGAG 57 84527818 84533121 CGGCTATGATACCTGTCAC 58 NA Rattus norvegicus 81 Add3 ENSRNOG00000012820 ENSRNOT00000044827,ENSRNOT00000017600,ENSRNOT00000086496 1 3 3 80 1 273945315 273945335 GGACCACATCATAATCATCCC 58 273945373 273946208 CCTATTATGTTGACCTTCACCAG 59 NA Rattus norvegicus 81 Cpeb1 ENSRNOG00000019161 ENSRNOT00000080925 3 1 3 94 1 143180917 143180935 TTGGTTAACACCTTCCGTG 58 143179899 143180860 TACACATACCCTTTGGGAGG 59 NA Rattus norvegicus 81 Tbata ENSRNOG00000000564 ENSRNOT00000000683 2 1 2 83 20 30791688 30794220 TATCCAAGATATCGCTGGCA 59 30794264 30794284 GTTAAGAATGAGGGCTGAGTC 59 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000080419 1 1 12 80 20 3363583 3364249 GAAGCAGAGGATAGGTCGG 59 3364293 3364311 AGCAACTGTATGCGTAGGT 59 NA Rattus norvegicus 81 Atmin ENSRNOG00000051838 ENSRNOT00000079159 1 1 1 99 7 74327028 74327046 GAAACCCAAACCTGTAGGA 57 74326944 74326962 CATATGACGAATGGACGCC 59 NA DesignNoJunction Rattus norvegicus 81 Baiap2 ENSRNOG00000004049 ENSRNOT00000068437,ENSRNOT00000005687 2 2 2 80 10 109107494 109122262 TGTCTACAAGACCATCATGGA 59 109122301 109122322 AGTGCTTTCTCATAGTTCTTCC 58 NA Rattus norvegicus 81 Fam178a ENSRNOG00000014482 ENSRNOT00000034814 1 1 2 80 1 264724775 264724796 AGTGTGATATTAGGGAAGATGC 58 264724836 264730055 TTGCTGCTGTAACTTCTACC 58 NA Rattus norvegicus 81 Coro7 ENSRNOG00000004146 ENSRNOT00000086305,ENSRNOT00000006067 3 2 2 82 10 11140946 11140964 GTACGAGGTGATCCCAGAG 59 11141008 11142016 GAAGGATAAAGCCCTTGTGAG 59 NA Rattus norvegicus 81 Uck2 ENSRNOG00000003917 ENSRNOT00000076125,ENSRNOT00000090668,ENSRNOT00000005213 1 3 3 80 13 85398133 85398153 CTCAAAGAAATCACCGAAGGA 58 85397249 85398091 GACTGTCTCCTCTTTCCGT 59 NA Rattus norvegicus 81 Slc28a2 ENSRNOG00000028668 ENSRNOT00000024658,ENSRNOT00000036435 3 2 2 80 3 114642687 114642706 GGCCTTCATCAATTCTACCC 58 114642749 114642933 TAGGAGCAGATGACCTGGA 59 NA Rattus norvegicus 81 LOC100910122 ENSRNOG00000047933 ENSRNOT00000091242 3 1 2 85 10 37048175 37048195 AGCTGGATGACATTCTAACAG 58 37049125 37051308 ATGAGTATCTTCTGGAGGGT 57 NA Rattus norvegicus 81 Cdk16 ENSRNOG00000008578 ENSRNOT00000011592 1 1 2 83 X 1712900 1713409 CTCTGCACCAGAGATTGTG 58 1712835 1712853 TCATCTGAGGATGTGGCTG 59 NA Rattus norvegicus 81 Sult1d1 ENSRNOG00000001960 ENSRNOT00000060179 2 1 3 89 14 22122669 22122688 TCTGGTCACATTACAGAAGG 57 22122750 22124753 ACTCCCTAGATCTCTGATCTC 57 NA Rattus norvegicus 81 Tmprss5 ENSRNOG00000008058 ENSRNOT00000011107 1 1 2 80 8 53417693 53417711 ACGTGGCTGTGTAATACTG 58 53417752 53418394 CAGAGATACAACACTAAGAGCC 58 NA Rattus norvegicus 81 Cchcr1 ENSRNOG00000050233 ENSRNOT00000084918 2 1 3 135 20 3731526 3731696 GACAAGAACCTCATGCTGC 59 3731248 3731428 TCAGGGAGCCTTTCATAGAC 59 NA Rattus norvegicus 81 Poldip3 ENSRNOG00000022877 ENSRNOT00000055988,ENSRNOT00000082524 3 2 2 81 7 124001736 124004078 GCCAAACAGAATTTGTATGACC 59 124001676 124001694 GGGCTGCAAACTTCATCTG 60 NA Rattus norvegicus 81 Erbb2 ENSRNOG00000006450 ENSRNOT00000078744 3 1 3 105 10 86383146 86383473 GGAAGAGGATTGTGCTGTG 59 86383708 86383727 GAAATGACTGCAGTTGACAC 58 NA Rattus norvegicus 81 Galnt2 ENSRNOG00000019143 ENSRNOT00000065431 3 1 2 81 19 57103750 57106511 TGTCTTTGCCCGTATTCAG 58 57106556 57106574 GACGTTGTCTAGGTACCAC 57 NA Rattus norvegicus 81 Galnt2 ENSRNOG00000019143 ENSRNOT00000080860 1 1 2 80 19 57106242 57106518 CCTATGGAAATATTCAGAGCAGAC 59 57106556 57106575 AGACGTTGTCTAGGTACCAC 59 NA Rattus norvegicus 81 Abcf1 ENSRNOG00000000799 ENSRNOT00000081403 1 1 3 114 20 3309953 3309971 TTCGGAGGACTCGTAACTG 59 3310049 3315196 CAGTTCCTCAAAGAACCGC 59 NA Rattus norvegicus 81 Ankrd46 ENSRNOG00000025504 ENSRNOT00000036904 3 1 1 61 7 75286744 75286763 CGAAATTGGAGACCATGCAG 60 75281143 75281161 GAGCAGTGAATGGCTTTCC 59 NA DesignNoJunction Rattus norvegicus 81 Rp2 ENSRNOG00000025428 ENSRNOT00000081913 1 1 2 90 X 2116439 2116457 GAAGCACTGCAAAGGAGTC 59 2105543 2116385 TTTGGATCAACGTTCTGCC 59 NA Rattus norvegicus 81 Lhb ENSRNOG00000047040 ENSRNOT00000042039,ENSRNOT00000067468 3 2 2 80 1 101413104 101413122 CAGAGAATGAGTTCTGCCC 58 101413166 101413412 GTACTCGAACCATGCTAGG 57 NA Rattus norvegicus 81 Krtcap2 ENSRNOG00000020542 ENSRNOT00000076458,ENSRNOT00000027867 3 2 2 80 2 188562603 188564539 AAATCTTCCCTGAGATTCTCCTC 60 188564579 188564597 AAGTGGTGACACAGACTCG 60 NA Rattus norvegicus 81 Agap1 ENSRNOG00000019476 ENSRNOT00000065720 2 1 2 80 9 96905259 96905277 TCCTACTCAGTCTCCAGTG 57 96905321 96970467 TTCTTCTTGCTCACTGCTG 58 NA Rattus norvegicus 81 Prodh ENSRNOG00000000281 ENSRNOT00000082855 3 1 2 84 11 87061770 87061788 TGGTGTCTTGGCTCTAGAG 58 87061836 87063144 CTTGGAACAACCTGGTCAC 59 NA Rattus norvegicus 81 Ndrg4 ENSRNOG00000012482 ENSRNOT00000051414,ENSRNOT00000017494 1 2 3 98 19 9774386 9780740 GGACTGGAAGGAACATGAC 58 9774306 9774324 TGGTAGGTAAGGATGGCTG 59 NA Rattus norvegicus 81 Zfp286a ENSRNOG00000003218 ENSRNOT00000004294,ENSRNOT00000084418 1 2 2 80 10 49191268 49191287 ACTACGATTCGGAAGATGGG 59 49188371 49191225 TGGTTTCCACGTCTGAGTC 60 NA Rattus norvegicus 81 Nampt ENSRNOG00000009754 ENSRNOT00000013043 3 1 2 113 6 52122157 52131594 GACTCGTACAAGGTTACTCAC 58 52131666 52131687 TTTCACCTTCCTTACTTTGGAG 58 NA Rattus norvegicus 81 Tinagl1 ENSRNOG00000013179 ENSRNOT00000080166,ENSRNOT00000018464 3 2 2 81 5 148384602 148384623 CCCAATAGTCATGTTGATTCCA 59 148384457 148384562 TCATGATCTCCTTCTCATCGG 59 NA Rattus norvegicus 81 Wnt7b ENSRNOG00000015750 ENSRNOT00000021196 3 1 2 130 7 126444030 126465675 TCTACGTGAAGCTCAGAGC 59 126443918 126443936 GATCACGATGATGGCATCG 59 NA Rattus norvegicus 81 Pi4kb ENSRNOG00000021024 ENSRNOT00000080966 1 1 2 88 2 196145614 196148410 GGTTTCTCGAACAGCTTGG 59 196148462 196148480 TCAGAAGTTGGCTTCAGGG 60 NA Rattus norvegicus 81 Map2 ENSRNOG00000011841 ENSRNOT00000045766 2 1 3 80 9 73427944 73429558 CCAAGGAAGATTTACTTACAGCC 60 73429597 73429616 CTAAAGGCTCAGCGAATGAG 59 NA Rattus norvegicus 81 Lrrc74b ENSRNOG00000001872 ENSRNOT00000074346 1 1 2 80 11 87422442 87422460 GTCGGCCTCCTTAAGTCTG 60 87418310 87422401 TCTGCTTACTTGGATACCAGAC 60 NA Rattus norvegicus 81 Dgat2l6 ENSRNOG00000038046 ENSRNOT00000076852 1 1 2 80 X 70373737 70377461 GTGATGTCCATGGTTGGAG 58 70377504 70377523 TTCAAAGTACTTTGCCACGG 59 NA Rattus norvegicus 81 Gpbp1l2 ENSRNOG00000046675 ENSRNOT00000076891,ENSRNOT00000075582 2 2 2 60 2 238696057 238696075 CACCTTTGACAAACACGGA 59 238696096 238696117 ACGGCTTATTCCAAATCTACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000019265 3 3 9 81 9 81545176 81545195 CAACACCATCAACCTGATCC 59 81545233 81545747 TCGTGTATGAATATAGGCCTTAGAG 60 NA Rattus norvegicus 81 Pde1c ENSRNOG00000012337 ENSRNOT00000017531 2 1 2 80 4 86375698 86375716 AAGAAGCGTTCTCATGGCT 60 86360511 86375655 CAAAGGAGGCTTGATGACTG 59 NA Rattus norvegicus 81 Gpr137b ENSRNOG00000002480 ENSRNOT00000003438 1 1 2 82 17 90701130 90701385 GGACTTCAGGGAAGGATCTC 59 90701429 90701448 AGGTCATGTTCCACTGAGTG 60 NA Rattus norvegicus 81 Usp46 ENSRNOG00000002106 ENSRNOT00000002879 3 1 2 81 14 36687233 36718157 CATCTGTAATATGGGCACCA 58 36718198 36718219 GAAGTAGTGTTCATTGATCGGA 58 NA Rattus norvegicus 81 Adgrl4 ENSRNOG00000033940 ENSRNOT00000047564,ENSRNOT00000088437 3 2 2 80 2 256685093 256686316 TTCTACCGACTTGGCTCTC 59 256686360 256686378 CCGTCCACATTCATATGGG 58 NA Rattus norvegicus 81 Mmp3 ENSRNOG00000032626 ENSRNOT00000012310 2 1 2 95 8 5685702 5686258 GCTCCAACATAAAGTCCCAG 59 5686316 5686334 TCCTGGAGAATGTGAGTGG 59 NA Rattus norvegicus 81 Mtmr1 ENSRNOG00000002697 ENSRNOT00000003638 2 1 2 82 18 312838 323148 GATTACAAGGCTCTGAGGGA 59 312775 312793 ATGGCCTTAATGGACTCCC 59 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076089,ENSRNOT00000010015 1 4 5 96 10 70164875 70164893 CATTGGCCATGTGTCTCAG 59 70163986 70164815 CTCTGAGTCAACGGACTGG 60 NA Rattus norvegicus 81 Sorbs1 ENSRNOG00000015658 ENSRNOT00000021289 2 1 5 80 1 259411979 259412490 CTACTAAAGTGGATCGTAAAGGC 59 259411921 259411939 TGCTAGTGTGAAACGTTCG 59 NA Rattus norvegicus 81 Laptm5 ENSRNOG00000011054 ENSRNOT00000015198 3 1 2 87 5 149047765 149060398 CTACCATATAGTCATGAGCGTC 58 149060446 149060464 CATCTTGGAGAACCTGCAG 58 NA Rattus norvegicus 81 Itfg2 ENSRNOG00000006264 ENSRNOT00000084173,ENSRNOT00000064174 2 2 3 80 4 161731671 161731690 TAATCTTCTGAAGCTGCTGG 58 161731536 161731628 GGAAGATCCTCAGGATCCA 58 NA Rattus norvegicus 81 Man2a2 ENSRNOG00000012055 ENSRNOT00000016281,ENSRNOT00000078982 3 2 2 80 1 142155170 142155188 GACAGTCGAGTAAGTCACG 58 142154984 142155126 AAAGACCACCACAAACCTG 58 NA Rattus norvegicus 81 Marveld3 ENSRNOG00000016291 ENSRNOT00000021866,ENSRNOT00000079730 3 2 2 83 19 41710582 41712638 GTTGGAGAGTGAACTGGCT 60 41712680 41712703 TCTGACTGGTAATATTCCTCTTCC 60 NA Rattus norvegicus 81 LOC100910885 ENSRNOG00000046779 ENSRNOT00000074245 1 1 2 87 7 118715095 118715119 GAGATCTTTGAAGATTCTGATGGAG 60 118715163 118717566 AGGCATCTTCCTCTTTCCTC 59 NA Rattus norvegicus 81 Osbpl6 ENSRNOG00000010812 ENSRNOT00000068199 1 1 2 80 3 63412287 63421102 AACTGCAGGTTCCTTTCAG 58 63421145 63421164 ACTCAATGTCTGCACAAAGG 59 NA Rattus norvegicus 81 Nfatc3 ENSRNOG00000054264 ENSRNOT00000087491 2 1 2 83 19 38091356 38111347 CACTTTAGATGATGTGAACGAG 57 38111391 38111409 GCATCTCTGATCACCTCTG 57 NA Rattus norvegicus 81 Usp3 ENSRNOG00000017714 ENSRNOT00000057739,ENSRNOT00000080319 3 2 2 80 8 72235633 72237231 AAAGTAAATGGAAGTACGGCTG 59 72235574 72235595 AAGGATAGCATTCATGAAGCAC 59 NA Rattus norvegicus 81 Crcp ENSRNOG00000000901 ENSRNOT00000001202 2 1 2 80 12 30151052 30180043 ACTATGAAGATTGGAAGGATGC 58 30148255 30148273 GCTCTTTGAGGTCTGTCAG 58 NA Rattus norvegicus 81 Myo5b ENSRNOG00000014104 ENSRNOT00000087959,ENSRNOT00000019512,ENSRNOT00000085318 2 3 3 80 18 70713729 70713749 GTCATTCTGGTTATCCAACAC 57 70713790 70716118 TTCTGTGTCATGAAACCCTC 58 NA Rattus norvegicus 81 Arid4a ENSRNOG00000026239 ENSRNOT00000089473 1 1 2 80 6 93507342 93507366 GTTGGGCTATAAAGATCTCAATCTC 60 93507404 93507562 CCGCTGTCAATACTGTCAC 59 NA Rattus norvegicus 81 Arid4a ENSRNOG00000026239 ENSRNOT00000089473 2 1 2 80 6 93469091 93469109 CAAGGACATCTGATGGCTC 58 93469150 93483665 CATCAAACACCACAGTATACCA 59 NA Rattus norvegicus 81 Esrra ENSRNOG00000021139 ENSRNOT00000028697,ENSRNOT00000078393 2 2 2 150 1 222170579 222170597 TGGTTGAACCTGAGAAGCT 59 222170354 222170465 GACAGTGAGGAGAAGCCTG 60 NA Rattus norvegicus 81 Tnpo3 ENSRNOG00000021758 ENSRNOT00000043902,ENSRNOT00000090038 1 2 2 80 4 56857997 56859680 CTTTGCTCAGTTGTACTCTACTC 59 56857939 56857958 GCAGCCATGATAAAGAGGAC 59 NA Rattus norvegicus 81 Rbbp8 ENSRNOG00000012899 ENSRNOT00000017291 2 1 2 84 18 3216678 3216697 TGCTTGGCAGATAACTTCTC 58 3216741 3219873 GTTTATCACCGTGTATGTTAGG 57 NA Rattus norvegicus 81 Klb ENSRNOG00000002834 ENSRNOT00000003811 2 1 1 60 14 44613098 44613119 TTTAACAGCTGTCTACACTGTG 59 44548524 44548542 ATGCCACACTTTCGAATGC 60 NA DesignNoJunction Rattus norvegicus 81 Map3k13 ENSRNOG00000025423 ENSRNOT00000078072,ENSRNOT00000035945 3 2 3 87 11 82753128 82753146 TCAATGGCTGTCAGTCTGG 60 82749914 82753079 TCATCTCCACTCTTCTGAAGG 59 NA Rattus norvegicus 81 Actn4 ENSRNOG00000020433 ENSRNOT00000090402 1 1 3 80 1 87097352 87097371 TCACCAACCTAAACAATGCA 58 87095162 87097311 CTACAATATCCTCAGCATCCA 57 NA Rattus norvegicus 81 Galnt6 ENSRNOG00000033059 ENSRNOT00000078848,ENSRNOT00000048488 3 2 2 80 7 142324889 142324910 TTAGGAACTGTCAGTTCATTGG 58 142323884 142324848 TGATGAGTTGATCCTGGGT 58 NA Rattus norvegicus 81 Gtf2i ENSRNOG00000001479 ENSRNOT00000077189 1 1 3 91 12 25450328 25452061 TTTGCAAGGAAGCCATCAC 59 25453985 25454005 TTTCTGAAGGGACATGTTGAG 58 NA Rattus norvegicus 81 Pnpla8 ENSRNOG00000039091 ENSRNOT00000047296 3 1 2 80 6 64274498 64281429 GAATGATCTTCATCAGGATGGAG 59 64281466 64281487 GGCCAGATACATTTACATTCGT 59 NA Rattus norvegicus 81 Alg13 ENSRNOG00000005753 ENSRNOT00000076521,ENSRNOT00000087859 2 2 4 80 X 115598873 115603845 TGTATCTACAGCTAACCTGTCTC 59 115603880 115603903 GGATAGTTGTATGAGGTAACTGTG 59 NA Rattus norvegicus 81 Man1a1 ENSRNOG00000000800 ENSRNOT00000087342,ENSRNOT00000057422 1 2 3 80 20 35279203 35287292 GGGTCAACATCATGTGTCAG 59 35279142 35279162 TTGTCAGACATTAACCATGCC 59 NA Rattus norvegicus 81 Stam ENSRNOG00000060817 ENSRNOT00000077368,ENSRNOT00000087129 2 2 2 80 17 81222923 81222942 TTGAATACTGCTGAGGACTG 57 81222985 81233696 ACAATCTTTAGGCCCTGTG 57 NA Rattus norvegicus 81 LOC100361595 ENSRNOG00000042570 ENSRNOT00000082791 3 1 2 80 4 109474574 109475468 CTGGATTCCCTACATCAGCT 59 109474513 109474533 GGTCTGTGGTTTCAGAAACAG 60 NA Rattus norvegicus 81 Axl ENSRNOG00000020716 ENSRNOT00000078668,ENSRNOT00000028131 3 2 3 99 1 82564030 82566755 ACCATCTGGTGAGTGAACC 59 82563949 82563968 GTCAAGATAAGGACACAGGC 58 NA Rattus norvegicus 81 Ccna2 ENSRNOG00000015423 ENSRNOT00000079745 2 1 2 121 2 123279037 123280053 CCAGAGATGTTGAATCACCC 58 123278935 123278955 CATTTCCCTAAGGTACGTGTG 59 NA Rattus norvegicus 81 Nav1 ENSRNOG00000008425 ENSRNOT00000064758 3 1 3 81 13 52430666 52435263 CCCTTTCAGTACAGATTACAGAC 59 52430607 52430627 GGCTGGTATATCCATCAAGGA 59 NA Rattus norvegicus 81 Pdzk1 ENSRNOG00000000096 ENSRNOT00000091578 2 1 2 80 2 198997767 198997790 GACAAGGCAGGAGAATGAG 58 198997834 198997852 TCCACCACTCTGTCATAGG 58 NA Rattus norvegicus 81 RGD1566226 ENSRNOG00000026061 ENSRNOT00000089660 1 1 2 80 3 122006608 122006629 TACTACACTGTGGAAGATTCTG 57 122001149 122006567 ATGAAAGGCTTCCCAACTG 58 NA Rattus norvegicus 81 Ppp1r13b ENSRNOG00000012653 ENSRNOT00000082600 1 1 2 81 6 136418660 136418678 GAACTTCAAGACATGGCGG 59 136416117 136418615 GTAAACGCTGTTCCTTGGC 60 NA Rattus norvegicus 81 Clca5 ENSRNOG00000013334 ENSRNOT00000085670 1 1 3 80 2 250763231 250765228 TTTGTCGGATATGACAGTTGG 59 250763171 250763189 TGTCCACAGGTACTGTACC 58 NA Rattus norvegicus 81 Tcf3 ENSRNOG00000051499 ENSRNOT00000077122 1 1 2 80 7 12164273 12164291 GAGGAGGTCACATCAGTGG 60 12164334 12167377 ATCTGTACTGCTGGTACGTG 60 NA Rattus norvegicus 81 Yif1b ENSRNOG00000020616 ENSRNOT00000027987 1 1 2 87 1 87187963 87187983 CTCCAGACCTCTACATTCCAG 59 87188141 87188984 CCAATCATCCTGTCCTGGG 60 NA Rattus norvegicus 81 Pias3 ENSRNOG00000021218 ENSRNOT00000028814 2 1 2 81 2 198829820 198830314 ACTGAGAGTCAGCACTACAG 59 198830358 198830376 CCCGGAATTGGAAGAAGTG 59 NA Rattus norvegicus 81 Wnt11 ENSRNOG00000015982 ENSRNOT00000021674 3 1 1 60 1 163807144 163807164 GTCTACACAACAGTGAAGTGG 59 163809699 163809717 TTACACTTCGTTTCCAGGG 57 NA DesignNoJunction Rattus norvegicus 81 B4galt6 ENSRNOG00000015895 ENSRNOT00000021764,ENSRNOT00000091696 2 2 3 130 18 15463871 15480352 GCCAACACATACCTCTTTATGG 60 15480442 15494600 CCTTCGGGATAATCTGTCCC 60 NA Rattus norvegicus 81 Rims2 ENSRNOG00000004201 ENSRNOT00000050753,ENSRNOT00000039984 2 2 4 80 7 78462380 78482264 CATTCGAAGTATCGCTCAGG 59 78482306 78482325 ACTTACATCACTGTCCGAGG 59 NA Rattus norvegicus 81 Ctage5 ENSRNOG00000005101 ENSRNOT00000006995,ENSRNOT00000086221 3 2 5 81 6 80235407 80235430 GCTTAGAGTCATCTTTAAAGGAGG 59 80235468 80237052 TGTGATCCTTCAACAAACTCC 59 NA Rattus norvegicus 81 Nedd8 ENSRNOG00000019895 ENSRNOT00000064916 3 1 2 135 15 34342137 34352406 TAAAGTGAAGACGCTGACTG 58 34341712 34341730 TTTGCCACTGTAGATGAGC 58 NA Rattus norvegicus 81 Scp2 ENSRNOG00000011413 ENSRNOT00000015420 3 1 3 84 5 127651597 127651615 GACTGCACAATCACCATGG 59 127648923 127651549 TACCTTGAAAGAAGGCCGA 59 NA Rattus norvegicus 81 Ikbip ENSRNOG00000008247 ENSRNOT00000010914 1 1 2 80 7 31792312 31795024 CCAACAAGCTTGAGTCTACTG 59 31795065 31795084 CTTCCTGTTCAAACTGGGTC 59 NA Rattus norvegicus 81 Calcr ENSRNOG00000010053 ENSRNOT00000013937 2 1 2 97 4 28647767 28647790 GTTCCTCACTTATATCCTGAACTC 59 28637801 28647712 TGCAACTTATAGGATCCCGT 59 NA Rattus norvegicus 81 Gng7 ENSRNOG00000019857 ENSRNOT00000026893 3 1 1 103 7 11625400 11625418 AGGTACTAACAACGTCGCC 60 11626365 11626383 TCATCAGTTCTGACGAGGC 60 NA DesignNoJunction Rattus norvegicus 81 Nfatc4 ENSRNOG00000020482 ENSRNOT00000089584,ENSRNOT00000027789 2 2 2 80 15 34495507 34496895 CCATCTTCAGGACCTCTGC 60 34496939 34496957 CCTCAATCCTCAGCTCCAG 60 NA Rattus norvegicus 81 Rimbp2 ENSRNOG00000022893 ENSRNOT00000067867,ENSRNOT00000033379,ENSRNOT00000086078 1 3 3 87 12 31589113 31589894 CAGATCATCAAGGTATATGGAGAC 59 31589940 31589958 TGTTACAGGGAATGAGGCC 59 NA Rattus norvegicus 81 Klrb1b ENSRNOG00000007310 ENSRNOT00000009594,ENSRNOT00000085887,ENSRNOT00000009904 1 3 3 80 4 161954335 161954353 GTCTAGCTGACTGTGGTGG 60 161953931 161954294 TCAAGTTCCGTAGGAATCTCAG 60 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000028249 3 1 7 87 1 83747903 83749337 TCTGGATTCCTCAGACTACCT 60 83749415 83749434 CAATGTGGCTATGGTGAAGC 60 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000085008,ENSRNOT00000028237,ENSRNOT00000092008,ENSRNOT00000085245 2 4 7 89 1 83714840 83714858 TATGAGGACACGGAGTTCC 59 83714911 83749627 CATGTCATAGAGCTGCCCT 59 NA Rattus norvegicus 81 Panx1 ENSRNOG00000010060 ENSRNOT00000083395 2 1 2 80 8 13569783 13584662 GCACAAGGTAATAATGAGTCTG 57 13569724 13569743 TTCGTCTTCAAGTACTGCTC 58 NA Rattus norvegicus 81 Panx1 ENSRNOG00000010060 ENSRNOT00000013577 1 1 2 81 8 13572014 13572032 GAGTGCTCGTGATTTGGAC 59 13569774 13571969 TATCTCCCACAGACTCTGC 58 NA Rattus norvegicus 81 Adgrd1 ENSRNOG00000023536 ENSRNOT00000073105 2 1 2 80 12 31233301 31238044 CAACTGGAGATATCATGGAAGG 58 31233242 31233261 CGTAGTAGAGAAACGTCACC 58 NA Rattus norvegicus 81 Adgrd1 ENSRNOG00000023536 ENSRNOT00000058586 3 1 2 80 12 31233305 31235253 GCGACCGTAGATATCATGG 58 31233243 31233262 GTAGTAGAGAAACGTCACCC 58 NA Rattus norvegicus 81 Sema5a ENSRNOG00000011977 ENSRNOT00000016506 3 1 2 159 2 85744232 85753808 AACAGGGAGGAAAGATACTGC 60 85753929 85753947 CATTGCATCCTGCACAGTC 60 NA Rattus norvegicus 81 Fpgt ENSRNOG00000009548 ENSRNOT00000077839 1 1 3 80 2 261399424 261399442 TCAGTGCCTAGAAAGCCTC 59 261384701 261399380 TTCAGATTCCATGAGCCGG 60 NA Rattus norvegicus 81 Adk ENSRNOG00000012325 ENSRNOT00000080274,ENSRNOT00000016709 3 2 2 80 15 3094068 3094086 AAGGTGAACTCGAAGAGGC 60 3056948 3094026 GACATCATTTCCTGTAGCCAC 59 NA Rattus norvegicus 81 Slc5a10 ENSRNOG00000002616 ENSRNOT00000032092 2 1 2 140 10 47950574 47950592 CTTCTTCCTCACCTGTGCT 59 47949961 47950221 GACTTGAAGCTCCCTCCTG 60 NA Rattus norvegicus 81 LOC100910957 ENSRNOG00000046845 ENSRNOT00000071150 2 1 2 141 17 89923570 89923589 TAGAGATGCTCTTCCTCTCG 58 89881467 89881487 GTTTCATACACTGATCGTGTG 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Klhdc10 ENSRNOG00000010267 ENSRNOT00000079059 2 1 2 81 4 57745770 57758319 TTCTTGAGAGGCCACAGAC 59 57758360 57758382 CTCCAAACACATAGAGATTGGTG 60 NA Rattus norvegicus 81 Zdhhc13 ENSRNOG00000014277 ENSRNOT00000019175,ENSRNOT00000081660 3 2 2 84 1 104119404 104119423 GATTCAGCAGCATCCATCTC 59 104119465 104121440 ATATTCACACTCTGTCCCTTAGAG 60 NA Rattus norvegicus 81 Abca14 ENSRNOG00000043296 ENSRNOT00000071302 1 1 3 80 1 189974768 189975001 TCTAGAAGTTGGTTCTCTACCT 58 189975854 189975874 ATCATACATACGACCAAAGCG 59 NA Rattus norvegicus 81 Agtpbp1 ENSRNOG00000018651 ENSRNOT00000091370 1 1 2 83 17 5613821 5613841 TTAGAGGTTGAATTAGCGGAG 58 5613885 5613990 TCATACTTCCTCAGAGTCGG 58 NA Rattus norvegicus 81 Naalad2 ENSRNOG00000005955 ENSRNOT00000081679 1 1 2 137 8 17496894 17496912 TACAATATTGGGCCTGGCT 59 17485229 17485508 GAATGACATACCAGGCTCTG 58 NA Rattus norvegicus 81 RGD1307947 ENSRNOG00000006973 ENSRNOT00000091319 1 1 3 108 7 40309614 40309632 ACTAAGGCACCATCCTGAC 59 40309523 40309544 GGTTTCCATTGAATTCGTTCC 58 NA Rattus norvegicus 81 Igf2 ENSRNOG00000020369 ENSRNOT00000050760,ENSRNOT00000080246,ENSRNOT00000073850,ENSRNOT00000089171 3 4 4 107 1 215831593 215832828 CTTCTACTTCAGCAGGCCT 59 215831504 215831522 GCACAGTATGTCTCCAGGA 59 NA Rattus norvegicus 81 Pknox2 ENSRNOG00000028856 ENSRNOT00000076232,ENSRNOT00000091894,ENSRNOT00000048875 3 3 5 80 8 39392764 39404631 GACAATCTGATGGTGAAGGC 59 39392703 39392723 GTCCTTGCAGAGTTCATTGAC 60 NA Rattus norvegicus 81 RGD1305298 ENSRNOG00000007184 ENSRNOT00000009444,ENSRNOT00000089238 2 2 3 85 6 135025758 135026358 GCCTTCAGATCAACTCCAG 58 135024800 135024820 TGAGTCTCCATCATAAGGGTC 59 NA Rattus norvegicus 81 Slc7a8 ENSRNOG00000014311 ENSRNOT00000092160,ENSRNOT00000019618 3 2 2 80 15 33371818 33371838 GGGTGTTCCTGTATACTTCCT 59 33371290 33371780 AGAGTTAGGGACTCAATGAAGTC 60 NA Rattus norvegicus 81 Rcbtb1 ENSRNOG00000021712 ENSRNOT00000081373 3 1 2 80 15 39658031 39658049 CAAGCGAGGAATCACTGTG 59 39658090 39669076 TGAGTACTGTAATTCTCTGCGT 59 NA Rattus norvegicus 81 Ntrk2 ENSRNOG00000018839 ENSRNOT00000082611,ENSRNOT00000042145 1 2 3 80 17 6013635 6070590 CGGACACATTTGTTCAGCA 59 6013573 6013591 AAACTTTCCCAAAGGCTCC 58 NA Rattus norvegicus 81 Dtx4 ENSRNOG00000021086 ENSRNOT00000083283,ENSRNOT00000028626 3 2 2 81 1 228745423 228745441 GGAAAGCTGTCGAAGTGTG 59 228741582 228745379 AACTTCCATCCTTGTTCCCA 59 NA Rattus norvegicus 81 Pusl1 ENSRNOG00000022354 ENSRNOT00000078453 3 1 2 97 5 173337584 173337602 AGAGTCAAGATCCCTTGGG 58 173337224 173337525 GGATGTAGGACCAAAGTTGTC 59 NA Rattus norvegicus 81 Rpe65 ENSRNOG00000009582 ENSRNOT00000078187,ENSRNOT00000051951 2 2 2 80 2 266146429 266146447 TGTTTGATGGACAAGCCCT 60 266146491 266153478 CAGTGCGGATGAATCTCCT 60 NA Rattus norvegicus 81 Slit2 ENSRNOG00000003840 ENSRNOT00000081601 2 1 2 82 14 66925897 66926777 CGTTGTTCAGCTAAAGAGCA 59 66922464 66922482 AAGTCTGCAAAGCAGTCTC 58 NA Rattus norvegicus 81 Stambp ENSRNOG00000012227 ENSRNOT00000014708,ENSRNOT00000086968 1 2 2 80 4 115265432 115271511 ACAACAAGTACATCACGCTG 59 115265371 115265391 CTTTCTTCTCGGGAATGATGG 59 NA Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000078494 1 1 6 80 1 41555595 41561428 TCCAGCCTAAGGAATCAAGG 59 41561471 41561489 GAATCGACTTGACGTAGCC 58 NA Rattus norvegicus 81 Ifitm5 ENSRNOG00000014923 ENSRNOT00000020023 3 1 1 70 1 213745590 213745608 GTACCTGAATCTGTGCTGC 59 213744990 213745008 CTACCTTCTTGTCTCGGGC 60 NA DesignNoJunction Rattus norvegicus 81 Ldb2 ENSRNOG00000003205 ENSRNOT00000058803 1 1 2 80 14 71105117 71110766 CCACTCAGGATGTGATGGT 59 71110807 71110828 TAGTGATTAGCCTTTCGTCCTC 60 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000064785,ENSRNOT00000029878,ENSRNOT00000029865,ENSRNOT00000060292,ENSRNOT00000000814 2 5 5 80 13 55080674 55085391 CTACATTGATGGCTTCAAGGA 58 55080406 55080426 TTCCAGAAGTCATCAACTGTC 58 NA Rattus norvegicus 81 Tmem239 ENSRNOG00000047866 ENSRNOT00000074215 2 1 1 75 3 122930730 122930748 CTCACCTCCATGACTCACC 60 122930787 122930806 GACACAAGCAGTAAGATGGG 59 NA DesignNoJunction Rattus norvegicus 81 Trappc11 ENSRNOG00000022482 ENSRNOT00000079466 3 1 2 80 16 47917209 47919992 GAAATACACCACAGGGTCGA 60 47920034 47920053 TAAGAACACCAAGAGCTGGT 59 NA Rattus norvegicus 81 Ctnna3 ENSRNOG00000000373 ENSRNOT00000057950,ENSRNOT00000084660 2 2 2 80 20 25064983 25120705 CTCATCGTGTCAGCTTTGG 59 25064921 25064939 CACTGTTTGCACTACAGCA 59 NA Rattus norvegicus 81 Dact3 ENSRNOG00000052256 ENSRNOT00000084601 3 1 1 144 1 78808852 78808870 GGATCTGGCTCCTATGGAC 59 78810332 78810350 GAGCTGAGAAGGATCGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Aifm3 ENSRNOG00000037957 ENSRNOT00000040978 2 1 2 81 11 87373772 87373792 CTGCTTCAATATTGGAACTGG 57 87373834 87373944 CTTCTCAATCTTCACCTGGA 57 NA Rattus norvegicus 81 Ly49s6 ENSRNOG00000053337 ENSRNOT00000083610 3 1 3 80 4 164445932 164445953 TGGCGTAAATGTATACAGACCT 59 164439030 164445893 GGTCCTGAAGGAACTTATCCT 59 NA Rattus norvegicus 81 Lin7a ENSRNOG00000004527 ENSRNOT00000006083,ENSRNOT00000072526 2 2 2 108 7 49386173 49531755 GGACAGAGATGTTGCAAGAG 59 49531826 49531844 AAACTCACTCTGAAGCACC 58 NA Rattus norvegicus 81 Shank2 ENSRNOG00000050206 ENSRNOT00000075078 2 1 3 80 1 217565145 217573321 GAATTGGAGGAACTCGATAAACC 60 217573360 217573379 TTCTATGGCCACGTTCTCTG 60 NA Rattus norvegicus 81 Shank2 ENSRNOG00000050206 ENSRNOT00000071484 2 1 3 80 1 217565153 217573321 GGAACTCGTGGATAAAGATAAACC 60 217573360 217573378 TCTATGGCCACGTTCTCTG 59 NA Rattus norvegicus 81 Amhr2 ENSRNOG00000014850 ENSRNOT00000020103,ENSRNOT00000091378 3 2 2 82 7 144058464 144058482 CAGTTCCTTGAGGATGGCT 59 144058528 144058662 GTTTGTACTGGCCATCCTG 59 NA Rattus norvegicus 81 Prom1 ENSRNOG00000003098 ENSRNOT00000084322 1 1 5 91 14 71629418 71629436 ATGCTCTTACTTCCGGCTG 60 71629486 71631483 GCTGATGGTTCATCATATACATCC 60 NA Rattus norvegicus 81 Bsn ENSRNOG00000030714 ENSRNOT00000042528,ENSRNOT00000082113 3 2 2 146 8 116882792 116883102 CAGTGAAGCGTATCACCTG 58 116882664 116882682 TAGTCATGGTAGCTGTGCC 59 NA Rattus norvegicus 81 Spidr ENSRNOG00000037851 ENSRNOT00000089517,ENSRNOT00000057502 3 2 2 80 11 89036382 89053527 CTACAAGAGGAAGGACACCA 59 89036321 89036339 AGGAAGGCTTGTTCAGAGG 59 NA Rattus norvegicus 81 Adam33 ENSRNOG00000021242 ENSRNOT00000028854 1 1 2 80 3 123597650 123597669 CTCCCTGATACTCATCTGGA 58 123597350 123597609 ATTGCAAACCATTCTAGGTCC 59 NA Rattus norvegicus 81 Pnldc1 ENSRNOG00000023140 ENSRNOT00000075858 1 1 3 80 1 48051109 48051127 AGCAGAACATCCATAGCCT 59 48051170 48052076 GAACTCTCACCTTCTTCCAG 58 NA Rattus norvegicus 81 Tal1 ENSRNOG00000025051 ENSRNOT00000091977,ENSRNOT00000035409 1 2 2 85 5 133872161 133875346 GGAGATAACGGATGGTCCC 59 133875395 133875413 CATTCACATTCTGCTGCCT 59 NA Rattus norvegicus 81 Ubr2 ENSRNOG00000015813 ENSRNOT00000081621 3 1 2 98 9 16071509 16071530 AACAGTGACATCATGAACTCTC 59 16072966 16072988 TCCTCTAACCCTTATCGCTC 58 NA Rattus norvegicus 81 Taok2 ENSRNOG00000019964 ENSRNOT00000081291 1 1 3 80 1 198311157 198311180 GAAGAAGATACTATTCCAAGAGGC 59 198310959 198311120 ATGTAAGGTTCTGCTTCCTCC 60 NA Rattus norvegicus 81 Dennd1b ENSRNOG00000011063 ENSRNOT00000043907,ENSRNOT00000075072 1 2 3 80 13 56234225 56235258 GGGCAAGCAAGATATCTTCTG 59 56235300 56235318 CCTGTGCATCAACAGAGTC 59 NA Rattus norvegicus 81 Kdm4c ENSRNOG00000006644 ENSRNOT00000009083 3 1 2 198 5 90971973 90975847 CCGACATAGAGTCAATTCAAACTC 60 90976002 90998809 GTTTCGGCTCACAATATCCTC 59 NA Rattus norvegicus 81 Taf12 ENSRNOG00000048288 ENSRNOT00000081681,ENSRNOT00000074251 2 2 2 82 5 150472357 150472375 TGTGGATCCCAGGATTTGG 59 150472420 150473333 CGCCATTCTCTGTTTGTGAG 60 NA Rattus norvegicus 81 Taf12 ENSRNOG00000048288 ENSRNOT00000081681 1 1 2 80 5 150466865 150467739 TCAGATAGCATTGATTGGCC 58 150467780 150467800 TTACACTTCAGCTCATAGAGC 58 NA Rattus norvegicus 81 Taf12 ENSRNOG00000048288 ENSRNOT00000081681 2 1 2 80 5 150466866 150467740 CAGATAGCATTGATTGGCCT 58 150467780 150467801 TTTACACTTCAGCTCATAGAGC 58 NA Rattus norvegicus 81 Ppp6r2 ENSRNOG00000026425 ENSRNOT00000011070 1 1 2 120 7 130250588 130250607 ACATCAGTGAAGTCATCCGA 59 130251951 130252895 TACTCAGAGAAGGCCAGGT 60 NA Rattus norvegicus 81 Tpd52 ENSRNOG00000011441 ENSRNOT00000077270 3 1 2 111 2 95036120 95037362 CCTGCTATGAGAAACTCTCCA 59 95038770 95038789 TCAGGACTTCTCCAAAGTCG 60 NA Rattus norvegicus 81 Gltscr1l ENSRNOG00000016229 ENSRNOT00000021762,ENSRNOT00000091809 1 2 2 94 9 16303760 16304244 TCGATCTTATTGGAGACCCAC 59 16304379 16304397 AGAATACCCTGCGTTCGTC 60 NA Rattus norvegicus 81 Azin2 ENSRNOG00000051507 ENSRNOT00000080340 3 1 2 84 5 147133882 147133900 CTTTCCTGGCTTAGAGGGA 58 147131973 147133335 AGCAGGGTGATAGAAAGGG 59 NA Rattus norvegicus 81 Ybx3 ENSRNOG00000005480 ENSRNOT00000068185 1 1 2 90 4 165621097 165621115 TAGAAGGGAGTCGCTATGC 59 165612404 165621043 ATCTCACCAGCATTACGGG 60 NA Rattus norvegicus 81 Ybx3 ENSRNOG00000005480 ENSRNOT00000068185 3 1 2 93 4 165621097 165621115 TAGAAGGGAGTCGCTATGC 59 165612401 165621041 CCAATCTCACCAGCATTACG 59 NA Rattus norvegicus 81 Cetn3 ENSRNOG00000048563 ENSRNOT00000089209,ENSRNOT00000072155 2 2 2 81 2 12102690 12104239 GTTTAGCTCTGAGAGGTGAG 58 12104281 12104301 TCTTGCTTCTGTTCTTCAGAG 58 NA Rattus norvegicus 81 Itih4 ENSRNOG00000017381 ENSRNOT00000061294,ENSRNOT00000048344 1 2 2 80 16 6980726 6981070 GAAAGTGGTGGAACAAGAAGG 60 6981303 6981321 GGCAGGATGATGGTAGGAG 59 NA Rattus norvegicus 81 P2rx7 ENSRNOG00000001296 ENSRNOT00000079201 3 1 2 86 12 39371179 39371197 CCTCAGTGTCCCATCTTCC 60 39369883 39371130 AAGTTTCAGCAGCTGAACTG 59 NA Rattus norvegicus 81 Cald1 ENSRNOG00000010233 ENSRNOT00000086377,ENSRNOT00000041264 3 2 2 80 4 62280552 62280572 CAATATCAAGAGCATGTGGGA 58 62280612 62281674 CCAGCAGTTTCCTTATTTGGT 59 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000030154 ENSRNOT00000051252,ENSRNOT00000088209,ENSRNOT00000083686 2 3 3 80 5 134206570 134206590 ACTATGTGAAGGTGGTTCTGG 60 134205114 134205839 GGAGCAAACCATAACCAATCC 60 NA Rattus norvegicus 81 Med12 ENSRNOG00000003848 ENSRNOT00000090192 3 1 3 80 X 71193971 71194152 TCCAGGCAAAGATACAGAGTC 60 71194191 71194212 GCAAACCATAGGAAGAACTAGG 59 NA Rattus norvegicus 81 Tmem156 ENSRNOG00000026518 ENSRNOT00000091312 2 1 2 80 14 44915834 44915853 GAAGTGCTTCCCTCAATACC 58 44915896 44917731 GTCCAAGGATAGCCATGTG 58 NA Rattus norvegicus 81 F13b ENSRNOG00000012613 ENSRNOT00000016944,ENSRNOT00000080335,ENSRNOT00000089913 2 3 3 80 13 56603687 56604287 CTGCAGGAAAGAACAAGAGAC 59 56604326 56604347 ACTTTGAATGTCCTCTGTATCG 58 NA Rattus norvegicus 81 Tmem132d ENSRNOG00000008447 ENSRNOT00000011181 2 1 2 80 12 32533695 32533713 AAGATGGCACAGTACAAGG 58 32533754 32594997 ATCTGTCAGAAACCTTAACCAC 58 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000090697 2 1 18 84 1 43454879 43474988 CTGGTCCAATGCTATACGC 59 43475036 43475054 ACTCAACTGCCCATATGCA 59 NA Rattus norvegicus 81 RGD1563060 ENSRNOG00000039260 ENSRNOT00000060125,ENSRNOT00000080220 3 2 2 81 18 38329673 38329691 CTGTCTCAGTTCTTCGCCT 59 38321401 38329629 TCATTTGGGTTGTCATCTGC 59 NA Rattus norvegicus 81 Tjap1 ENSRNOG00000018980 ENSRNOT00000091113 2 1 2 106 9 17107088 17107106 GAACAGCTACACAGCATCC 59 17107414 17108136 TCTCAGCCTTCTTGATTGC 58 NA Rattus norvegicus 81 Cdc37 ENSRNOG00000033426 ENSRNOT00000079949 3 1 2 81 8 22161435 22161454 GATGCCAAGTATCACATGCA 59 22155432 22161393 ATAATCCTTCCTCCACTCCAG 59 NA Rattus norvegicus 81 Tpm2 ENSRNOG00000016731 ENSRNOT00000022801 2 1 2 85 5 59017878 59020275 CCTGGAAGATGAAGTCTATGC 58 59017813 59017832 GGGAAGTGATGTCATTGAGC 59 NA Rattus norvegicus 81 Sulf1 ENSRNOG00000009037 ENSRNOT00000072411,ENSRNOT00000012610 2 2 2 80 5 6020357 6020378 AAGAATTTAAGGGAAGTGAGGG 58 6019873 6020319 GTTGTAATAGCTCTGCTTACCA 58 NA Rattus norvegicus 81 Scarb1 ENSRNOG00000000981 ENSRNOT00000064276,ENSRNOT00000001299 2 2 3 81 12 36695272 36734421 GCAGGTGCTCAAGAATGTC 59 36734465 36734484 CAAGTAGAAGGGAACAGGGA 59 NA Rattus norvegicus 81 Mapkapk5 ENSRNOG00000001345 ENSRNOT00000001817 2 1 2 80 12 40510567 40514898 AGAAAGCCATCAAGGAGAC 57 40514942 40514960 GACCACTAATTCCAGCTCC 58 NA Rattus norvegicus 81 Cd163 ENSRNOG00000010253 ENSRNOT00000068407 2 1 2 80 4 156780957 156780981 GATACATCAAGTTCAGTACCAAGAG 59 156781019 156784679 CTTAAATGCCAACCCGAGG 59 NA Rattus norvegicus 81 Acad10 ENSRNOG00000037815 ENSRNOT00000057435 2 1 2 80 12 40447490 40448820 CAGTTTATGGAACAGAAGGGTG 59 40448861 40448879 TGAAGAAAGGAAGGCCTCG 60 NA Rattus norvegicus 81 Atp2b1 ENSRNOG00000004026 ENSRNOT00000041354,ENSRNOT00000066174 2 2 2 80 7 41186208 41189738 CTTCTTTCAGGTACTCATGTAATGG 60 41189774 41189794 GATCCCAGTTTGAGAGTTCAC 59 NA Rattus norvegicus 81 Ttc13 ENSRNOG00000018884 ENSRNOT00000079783 1 1 2 80 19 57458363 57458382 CTTTGTTTGAACTGAGCCGA 59 57455884 57458320 GGGACAGAATTTCAGCTCG 59 NA Rattus norvegicus 81 Slc38a5 ENSRNOG00000027767 ENSRNOT00000079664,ENSRNOT00000038068 2 2 2 80 X 14965037 14965150 GATATCTTTGGGTTTATTGGCTCC 60 14964980 14965000 TACAATGCGGAGGTAGAAGAC 60 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000026637,ENSRNOT00000026559,ENSRNOT00000083811 1 3 6 85 9 17351566 17351584 ACGTGTAAATGTTCCTGCA 58 17351632 17353781 TTGTCACATCTGCAAGTACG 59 NA Rattus norvegicus 81 AABR07070599.1 ENSRNOG00000059112 ENSRNOT00000088413 3 1 1 61 8 76479840 76479861 CTGGGAAATAGCAGAATTTGTG 58 76479799 76479818 TCTTCACATCTTGCTGAAGC 59 NA DesignNoJunction Rattus norvegicus 81 Iqca1 ENSRNOG00000019592 ENSRNOT00000056724 3 1 2 81 9 97190497 97190515 CTTCAGTCCTTCTGCAGAG 58 97186467 97190453 TCAACCACATTCCGTATCTG 58 NA Rattus norvegicus 81 Lnp ENSRNOG00000001593 ENSRNOT00000068018,ENSRNOT00000083045 3 2 2 80 3 61440231 61441705 CACTGAAGGAGGAACAATACC 59 61440171 61440191 TTCACTTTGAGCCAGTTAGAC 58 NA Rattus norvegicus 81 Sirpa ENSRNOG00000004763 ENSRNOT00000006408 1 1 2 80 3 122141381 122141399 AAGGGCTCAACTTCTTCCA 59 122148170 122150145 GTCATTTGTGTCCTGGATCTG 59 NA Rattus norvegicus 81 RGD1564614 ENSRNOG00000042369 ENSRNOT00000083912 2 1 2 81 13 56941973 56941991 CCTTCAGGGTCACATTCAG 58 56941504 56941928 AAACACATTCCTTGAGGCA 58 NA Rattus norvegicus 81 Ube3a ENSRNOG00000015734 ENSRNOT00000083587 3 1 2 96 1 116674235 116674255 GTTTACAACAGGCACAGACAG 60 116674313 116679772 GTTGCCGTGTCTTTCTGTG 60 NA Rattus norvegicus 81 Ncam2 ENSRNOG00000002126 ENSRNOT00000078127,ENSRNOT00000002895 1 2 3 82 11 20689206 20700765 CAGCTTACCTGAAAGATGGA 57 20700810 20700828 CCCGTCTTCATGGTTAGTG 58 NA Rattus norvegicus 81 Ubxn6 ENSRNOG00000048509 ENSRNOT00000089071,ENSRNOT00000070986 3 2 2 80 9 10998334 10998355 ATATCCATTTGCATCCAGAGGA 60 10998396 10999109 GGCAGTTGATTCGTTCCTG 59 NA Rattus norvegicus 81 Fbxl5 ENSRNOG00000005261 ENSRNOT00000078326 2 1 2 83 14 71875782 71875803 TAGAGCTTTGTCCTAATCTGGA 59 71875847 71876779 CAAGCCAAGACCAACTGTC 59 NA Rattus norvegicus 81 Sorcs2 ENSRNOG00000007033 ENSRNOT00000009960,ENSRNOT00000089334 2 2 2 80 14 79865251 79865270 ACTATGTCTCTTATCGCCGC 60 79865311 79872066 TGATGATCTGTAGGTCCTTGG 59 NA Rattus norvegicus 81 Crot ENSRNOG00000006779 ENSRNOT00000067462,ENSRNOT00000091799,ENSRNOT00000090968 1 3 3 80 4 22104869 22106909 GTAGCTGTGATCATGCTCC 58 22106953 22106971 CCGTCTCTAGGAGCTTCTC 59 NA Rattus norvegicus 81 Crot ENSRNOG00000006779 ENSRNOT00000067462,ENSRNOT00000091799 2 2 3 81 4 22111747 22111765 TACGAATTCAGGGAGTCGT 58 22111810 22115359 ACCACAAACCTGTCATCTC 57 NA Rattus norvegicus 81 Cdca7l ENSRNOG00000005410 ENSRNOT00000064868,ENSRNOT00000088969 3 2 2 80 6 145776306 145776327 GACTCGGACAATGAAGATTTCG 60 145776366 145778975 CTCTGACTCTATGAGCTCTGG 59 NA Rattus norvegicus 81 Gcnt2 ENSRNOG00000023778 ENSRNOT00000078010,ENSRNOT00000035448 3 2 3 80 17 21639928 21676090 ATAGGATTCCAGGAGTCCCT 59 21639867 21639887 CCATATCCTTCCACTTCACAG 58 NA Rattus norvegicus 81 Habp2 ENSRNOG00000016659 ENSRNOT00000044183 1 1 2 80 1 277091126 277093130 GAAGACGATGATCCATGCC 59 277093173 277093192 GCTGCAACTGAAGGTATTCC 59 NA Rattus norvegicus 81 Trdn ENSRNOG00000012609 ENSRNOT00000042072 1 1 2 80 1 25769126 25769149 CTGATATCATCTCATCTGATGGTG 59 25767983 25769093 GAGGTTCTTCTATTTCTCCTTTGTC 60 NA Rattus norvegicus 81 Oas2 ENSRNOG00000049282 ENSRNOT00000077542,ENSRNOT00000072024,ENSRNOT00000091460 3 3 3 80 12 41354905 41355016 GATCATCAAGGGAGGATCCA 59 41355059 41355077 GAGCTGAGGAACACTACGA 59 NA Rattus norvegicus 81 St8sia2 ENSRNOG00000012031 ENSRNOT00000016427,ENSRNOT00000079929 3 2 3 84 1 135365200 135365218 GAAAGCCTTAAGCACAGCA 59 135360434 135365155 AAATTTGCTTCCTGATCCTCAG 59 NA Rattus norvegicus 81 Mrpl23 ENSRNOG00000020354 ENSRNOT00000027585 1 1 1 60 1 215704025 215704045 CTGAAGATACAGTGCAATTCC 57 215705028 215705046 TAATTTCGAAGGTCCACCC 57 NA DesignNoJunction Rattus norvegicus 81 Sun5 ENSRNOG00000027221 ENSRNOT00000037589 1 1 2 84 3 149339634 149339653 GTATAACCACGACAAGGCTC 59 149338246 149339587 AGGTGTAACACTGGGATCC 59 NA Rattus norvegicus 81 Dnase1l1 ENSRNOG00000055641 ENSRNOT00000083203 3 1 2 99 X 156437507 156437610 CTGAGGAAGAGGCTCTTCG 60 156437671 156437691 AGTAGAGTGGACAAACAGTGG 60 NA Rattus norvegicus 81 Atp6v1h ENSRNOG00000030862 ENSRNOT00000065402 2 1 2 83 5 14287922 14297695 CCAGGACCTTAGAATCTTGAC 58 14287859 14287877 TCTCCAACATCATGAGCAG 57 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000048782,ENSRNOT00000001853 3 2 6 81 12 41258882 41302465 TGGTACCAACTGTGTAAGGAG 60 41258821 41258839 CCCAGGCATAGATCGTGAG 60 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000074070,ENSRNOT00000024187 2 2 7 80 19 15094500 15095179 CACCTATCCACCTATGTGC 57 15095222 15095241 ACTTTCTCCTTTCTGTTGGT 57 NA Rattus norvegicus 81 Rbms3 ENSRNOG00000025881 ENSRNOT00000036642 2 1 4 80 8 124844301 124892615 CAGGAACGTATATGACCGCT 60 124844240 124844258 TAGAAACAGCTGTCGGAGG 59 NA Rattus norvegicus 81 Zfp354a ENSRNOG00000003634 ENSRNOT00000045596 2 1 2 82 10 36590000 36590018 GATCTGTCTCAGAGAAGCC 57 36590064 36590558 GTAAACAGGAATCCTGCCA 57 NA Rattus norvegicus 81 Alox12 ENSRNOG00000027037 ENSRNOT00000033098,ENSRNOT00000091131 2 2 2 80 10 56856406 56858770 CTATCTTTAAGCTCCTAGTTCCG 58 56856348 56856366 CATCTGAGATGAGCTGGGT 59 NA Rattus norvegicus 81 Alox12 ENSRNOG00000027037 ENSRNOT00000033098 2 1 2 80 10 56852873 56852892 TCCCTGATGTTCAGAAGTCC 59 56852703 56852831 CTAGAGGTACCATGTCTGGC 59 NA Rattus norvegicus 81 LOC100360165 ENSRNOG00000021313 ENSRNOT00000038396 3 1 4 89 4 167483798 167483817 ACTATAGAGGTCGTCCTCCA 59 167483869 167483890 GATTCCTAGGTTCGAGCCT 59 NA Rattus norvegicus 81 Ncaph2 ENSRNOG00000009598 ENSRNOT00000055808 2 1 2 81 7 130334333 130334351 TGTCACTGGATGACTTCCC 59 130334393 130334498 GGAATGATAAGCAGTTCACTGG 60 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000081637 3 1 6 80 1 41928758 41928776 CCAGAGACCTTAAACAGCA 57 41928241 41928714 ATCTCATCCGTTGCTTGAC 58 NA Rattus norvegicus 81 Capn11 ENSRNOG00000026025 ENSRNOT00000067104 1 1 2 80 9 17742307 17742325 AGAACTGGAGACATGCTCG 60 17742367 17746330 GAAACTGTACGTACCAAACCG 60 NA Rattus norvegicus 81 Capn11 ENSRNOG00000026025 ENSRNOT00000065754 3 1 2 80 9 17742304 17742324 AGAAGAACTGGAGACATGCTC 60 17742366 17746330 GAAACTCCTTTGGGACCGA 60 NA Rattus norvegicus 81 Clec5a ENSRNOG00000026306 ENSRNOT00000033265 3 1 2 81 4 68818498 68819242 TCTGCTGTACTTCCCACAG 59 68818435 68818453 CTGCACATTAGTGGTTCCG 59 NA Rattus norvegicus 81 App ENSRNOG00000006997 ENSRNOT00000044081 2 1 2 124 11 24435423 24447174 ATGAAGGGTCTGGGTTGAC 59 24431765 24435337 ATCTTCTGCAAAGAACACCAG 59 NA Rattus norvegicus 81 App ENSRNOG00000006997 ENSRNOT00000048854 1 1 2 80 11 24441019 24447176 AAATGAAGTTGAGCCTGTCG 59 24435417 24435435 ATGTTTGTCAACCCAGACC 58 NA Rattus norvegicus 81 App ENSRNOG00000006997 ENSRNOT00000048854 3 1 2 82 11 24441019 24447176 AAATGAAGTTGAGCCTGTCG 59 24435415 24435434 TGATGTTTGTCAACCCAGAC 59 NA Rattus norvegicus 81 Elf2 ENSRNOG00000010815 ENSRNOT00000047635 1 1 2 80 2 140366102 140366121 TGAGACTTACATGATGCAGG 57 140324564 140366059 TGAACTGATGCTTCCACTG 58 NA Rattus norvegicus 81 Bco2 ENSRNOG00000038746 ENSRNOT00000059192,ENSRNOT00000059191 1 2 2 80 8 54973649 54973669 GATGATGGGAGAAGCCTAGAC 60 54969926 54973609 TGCCTTATAGACCTGATCGAG 59 NA Rattus norvegicus 81 Naa38 ENSRNOG00000009823 ENSRNOT00000013071 3 1 1 84 10 55998349 55998367 GCAAGAATTCCTCAAGCCT 58 55998574 55998592 GATGTGGTGTCCTGGTACC 60 NA DesignNoJunction Rattus norvegicus 81 Stard10 ENSRNOG00000019491 ENSRNOT00000085555,ENSRNOT00000026428 1 2 2 80 1 166433670 166453782 GCACAAGATCAAGTGCAGG 60 166453825 166453844 CGGTATTCTATGTCGTGCAG 59 NA Rattus norvegicus 81 Stard10 ENSRNOG00000019491 ENSRNOT00000085555,ENSRNOT00000026428 3 2 2 80 1 166433675 166453787 AGATCAAGTGCAGGATGGA 58 166453828 166453849 TCTTTCGGTATTCTATGTCGTG 58 NA Rattus norvegicus 81 Clip1 ENSRNOG00000001247 ENSRNOT00000088002 2 1 4 80 12 38447619 38450300 AGGAGAGTCAGATTGATTTCCT 59 38450340 38450359 TCTCCACCTTCATCTTGAGG 59 NA Rattus norvegicus 81 Dpp4 ENSRNOG00000030763 ENSRNOT00000085426,ENSRNOT00000077788 2 2 3 80 3 48293650 48293671 ACATCTATTCCCACATGAGC 58 48293581 48293599 TGTGCTCTTGAGTAAGCTG 58 NA Rattus norvegicus 81 Chst15 ENSRNOG00000016267 ENSRNOT00000066711 2 1 2 80 1 204267363 204267383 GACTTCATCCATGCCTTTCAG 59 204261990 204267321 TTGGCTCTGTTGAATGCTC 59 NA Rattus norvegicus 81 Chst15 ENSRNOG00000016267 ENSRNOT00000022157 2 1 2 80 1 204267368 204267386 CAAGACTTCATCCATGCCT 58 204254845 204267325 GTCTGAGTACAACCTCTCCA 59 NA Rattus norvegicus 81 Tada1 ENSRNOG00000003816 ENSRNOT00000005090 3 1 2 101 13 84591832 84596598 GTTTCTACACCAGAGGGTG 58 84596662 84596681 TTGACGAACAGAAGAAAGCT 58 NA Rattus norvegicus 81 Sytl1 ENSRNOG00000008600 ENSRNOT00000087836 1 1 2 80 5 151449080 151449098 CTCCTTGTGGGATCATGGG 60 151448840 151449038 CCATAACTACTGCCAGTACCA 59 NA Rattus norvegicus 81 Gas6 ENSRNOG00000018233 ENSRNOT00000024677 1 1 2 80 16 81214626 81214644 GACTGGACCTGCTTAAGAC 58 81213884 81214584 TGGAAGTCACTTGTACATCTG 58 NA Rattus norvegicus 81 Sox6 ENSRNOG00000020514 ENSRNOT00000048020 1 1 2 107 1 186009516 186067930 ACAGATCCAGCAGGTTCAG 59 186068001 186068019 AAGAGGAATCCCTGTTGGG 59 NA Rattus norvegicus 81 Csnk2b ENSRNOG00000000847 ENSRNOT00000001123,ENSRNOT00000076528,ENSRNOT00000092222 2 3 3 80 20 5110644 5111498 TGGAACCTGATGAAGAGCTG 60 5110583 5110602 TCAACCCATAGAGCATCTCG 59 NA Rattus norvegicus 81 Ccng1 ENSRNOG00000003256 ENSRNOT00000079646 3 1 2 137 10 25906115 25906133 AAACAAGTGTTCCAAGCCG 59 25904318 25906014 CAGATGTACTCGGTTCCCA 59 NA Rattus norvegicus 81 Gsta3 ENSRNOG00000056847 ENSRNOT00000077372 2 1 2 80 9 27402399 27402418 CTTCACTACTTCGATGGCAG 59 27402457 27403400 AGATTGTTTCTCCTCTACTCCAG 59 NA Rattus norvegicus 81 Dnah1 ENSRNOG00000026914 ENSRNOT00000035009 1 1 2 80 16 7388203 7388221 TGCTAACATCACCAATGCT 57 7387902 7388163 GTCTGATAGGTCTTTCTGTACTC 58 NA Rattus norvegicus 81 Ikzf2 ENSRNOG00000027430 ENSRNOT00000057849 1 1 2 80 9 76638716 76638734 GTCATAGAGAAGCTCACGG 58 76621473 76638674 CAGTAGATGTCTCATTCCCAC 58 NA Rattus norvegicus 81 Rasal2 ENSRNOG00000004917 ENSRNOT00000033324,ENSRNOT00000089062 3 2 2 80 13 74796683 74796701 GCTCCAGTCCAAATGTCAG 59 74795828 74796641 TATGCAAATCACTGTCAGTGG 59 NA Rattus norvegicus 81 Rps5 ENSRNOG00000019453 ENSRNOT00000026528,ENSRNOT00000088367 1 2 2 80 1 65663872 65663890 GACATCAAGCTCTTTGGGA 58 65661741 65663830 CTTCACAGCAATGTAATCCTG 57 NA Rattus norvegicus 81 Hdgfrp3 ENSRNOG00000019740 ENSRNOT00000026754,ENSRNOT00000076414 2 2 2 82 1 143718887 143723670 CATGAAACTGCATTTCTAGGTC 58 143718826 143718845 TTCCGTTTGTTTGACTTTCC 57 NA Rattus norvegicus 81 Rnf123 ENSRNOG00000033378 ENSRNOT00000050344 3 1 2 92 8 116841404 116841668 GTCTTGGAGAGCCAGACAG 60 116841330 116841348 AGGGTTGGAGAACTTAGCC 59 NA Rattus norvegicus 81 Rgs5 ENSRNOG00000002730 ENSRNOT00000003705 2 1 2 104 13 88001002 88001026 GAGAATTACAAGAAGATCAAGTCCC 60 88001087 88002681 GTCAATGTTCACCTCCTTCG 59 NA Rattus norvegicus 81 Mpp3 ENSRNOG00000033653 ENSRNOT00000084266,ENSRNOT00000028264 2 2 2 80 10 89935835 89936096 TCCAGCACAACAAGTTCCT 60 89935773 89935791 TAACGGTCTGAATGGCCTC 60 NA Rattus norvegicus 81 Ap3b1 ENSRNOG00000010624 ENSRNOT00000066302 3 1 2 80 2 24224277 24224805 TTCAAGAAAGGTTTGCAGC 57 24224849 24224867 CTGTGGAACCTTCCTTCAG 58 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000072897 3 1 6 87 13 84491836 84491859 CTCTATTACTGTATCATCACCACC 58 84491905 84513655 CAAACACCCACTCCAACAC 59 NA Rattus norvegicus 81 Abcg8 ENSRNOG00000005420 ENSRNOT00000007638 1 1 2 85 6 7964958 7964977 CTGAAAGTGACAACAGCCTC 59 7965025 7966831 CATGTCCACCTGGTAGGTG 60 NA Rattus norvegicus 81 Abcg8 ENSRNOG00000005420 ENSRNOT00000007638 3 1 2 87 6 7964956 7964975 CTCTGAAAGTGACAACAGCC 59 7965025 7966831 CATGTCCACCTGGTAGGTG 60 NA Rattus norvegicus 81 Ankrd13b ENSRNOG00000014742 ENSRNOT00000056110,ENSRNOT00000019946 1 2 2 80 10 62689403 62689557 TTCCCAGTCAAGATTGAAATCC 59 62689598 62689616 CTCATCGCAACCATTGAGG 59 NA Rattus norvegicus 81 Slc7a2 ENSRNOG00000011016 ENSRNOT00000014809 1 1 2 81 16 54471465 54471485 CATTTGAATATGTCGGATGGG 57 54469219 54471425 CCAAGAAGACTTGTTGATAAGG 57 NA Rattus norvegicus 81 LOC100911993 ENSRNOG00000013602 ENSRNOT00000077933 2 1 2 81 5 155966635 155968392 CAACAATGAAGGGTGATGGA 58 155968435 155968454 TCATCTAGTTGCTCAAGAGC 58 NA Rattus norvegicus 81 Oplah ENSRNOG00000011781 ENSRNOT00000080724,ENSRNOT00000077314,ENSRNOT00000016424 3 3 3 80 7 117360889 117360908 CAACTGGACCAGAGACTGAG 60 117360639 117360847 GATCTGAGACCTAGGGAAGC 59 NA Rattus norvegicus 81 Nek6 ENSRNOG00000010897 ENSRNOT00000086147,ENSRNOT00000082561,ENSRNOT00000014630 2 3 3 80 3 22884844 22887244 CTACTCTGAGAAGCTTCGG 57 22887287 22887306 TGCACATACTCAATGTCAGG 58 NA Rattus norvegicus 81 LOC691135 ENSRNOG00000015271 ENSRNOT00000084806 2 1 2 80 1 69616216 69618779 ATGATCTGTACACAGGGCTG 60 69618822 69618840 TTCATCCAGGAGCTTCCAC 59 NA Rattus norvegicus 81 Dclre1b ENSRNOG00000019367 ENSRNOT00000026213,ENSRNOT00000080702 2 2 2 80 2 206288317 206291579 AAAGATTGGCCTCTATAGTCTAGG 59 206288260 206288279 CTCAATACCACCCAGGTCTG 60 NA Rattus norvegicus 81 Pitpnm2 ENSRNOG00000029260 ENSRNOT00000091084 2 1 3 124 12 37897741 37898574 GGACATCGGAGAAGTTGCT 60 37898662 37898680 AGTAGCTGGCATGGAAGAG 59 NA Rattus norvegicus 81 Otos ENSRNOG00000016567 ENSRNOT00000090382,ENSRNOT00000022220 1 2 2 139 9 99821632 99821650 CACTTGGTAAGGATGCAGC 59 99820694 99820712 GAGAAAGGCCAGTAAGGCA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cnksr3 ENSRNOG00000018052 ENSRNOT00000024418 3 1 2 86 1 43831919 43883704 GACTAGAGGGTTGGATGACTG 60 43831853 43831873 GAGATCTTTAGCAACTGCTCC 59 NA Rattus norvegicus 81 Clic6 ENSRNOG00000026870 ENSRNOT00000084412,ENSRNOT00000034383 3 2 2 80 11 32690007 32697745 CACATCATTAAGATTGTGGCCA 59 32697784 32697804 GTTCAAGTACCTCCAAATGCC 60 NA Rattus norvegicus 81 Arrdc4 ENSRNOG00000010775 ENSRNOT00000051402 1 1 2 80 1 129769067 129769086 GCCTGCTACTCTATGTTTGC 59 129767272 129769025 CAACTGAGCATGTGACTCTG 59 NA Rattus norvegicus 81 Sel1l2 ENSRNOG00000004852 ENSRNOT00000081589,ENSRNOT00000033562,ENSRNOT00000085149 2 3 3 80 3 134293428 134293448 TTATCTAGCCGAGATGTACGC 60 134292328 134293390 CAGACTCCTTTATAAAGCTCCAC 59 NA Rattus norvegicus 81 Zfp266 ENSRNOG00000034037 ENSRNOT00000085060 1 1 2 80 8 21522791 21522812 CGTCTACGAAGCAAACATAGAG 59 21521981 21522751 TCGAAGGTCACTGAATCCTG 60 NA Rattus norvegicus 81 Nelfe ENSRNOG00000000420 ENSRNOT00000076352,ENSRNOT00000000478,ENSRNOT00000075925 2 3 3 82 20 4532689 4532707 CTATCAGTGCCATCAAGGC 58 4532752 4533421 CTCTGGGTCCTTTAACTTCC 58 NA Rattus norvegicus 81 Poln ENSRNOG00000027929 ENSRNOT00000029784,ENSRNOT00000058067 3 2 3 89 14 81948657 81950487 TCTGGAATATAGACAGGTTCAC 57 81951868 81951887 CATGTAGAAGAGATGGAGCC 58 NA Rattus norvegicus 81 Ube2f ENSRNOG00000019953 ENSRNOT00000027050 3 1 2 80 9 98410216 98418585 TGACTGTAAGCCCAGATGAG 59 98418628 98418646 CCATGTTGTAGGCATCAGG 58 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000014230,ENSRNOT00000083233 3 4 10 81 10 87118088 87120489 CGATGGAGACAGAGGAGAC 59 87118025 87118043 TCCTCAGGAGTAGATGTGC 58 NA Rattus norvegicus 81 Clec2l ENSRNOG00000029644 ENSRNOT00000077486,ENSRNOT00000067097 2 2 2 80 4 66418797 66420755 TGACCCAGACACATTCACC 60 66420798 66420817 AGACACTCTGTTGACACCAG 60 NA Rattus norvegicus 81 Ifnar1 ENSRNOG00000028594 ENSRNOT00000029985,ENSRNOT00000091472 3 2 2 81 11 31654116 31654135 AAGGTGACAGCTATGTTCTG 58 31654177 31656849 TTTGAATAGACAGGGATCCAC 58 NA Rattus norvegicus 81 Thumpd2 ENSRNOG00000008291 ENSRNOT00000084499 2 1 3 141 6 3767589 3782244 AAGCCAGACTTAGAGGCAG 59 3767064 3767082 CACATGCGCCAAGTAACTG 60 NA Rattus norvegicus 81 Fbxw8 ENSRNOG00000001126 ENSRNOT00000080853 2 1 3 84 12 44076251 44103308 ATCGCAGGGAATTCTTAACG 59 44103354 44103373 GGCTTGTATTCTTGCATCGT 59 NA Rattus norvegicus 81 RGD1560324 ENSRNOG00000042471 ENSRNOT00000065365,ENSRNOT00000086481 3 2 2 80 2 149926952 149935412 CAGTGACTCAACTGCTACAG 58 149935453 149935473 CCTGTAGTCCAGGATATAGCA 58 NA Rattus norvegicus 81 Rpain ENSRNOG00000006913 ENSRNOT00000044363 3 1 2 108 10 57611214 57611232 AATGTGAACGAGCACAGTG 59 57611303 57613523 GTAGCTTATAAGCCAGGCAG 58 NA Rattus norvegicus 81 Slc2a9 ENSRNOG00000005302 ENSRNOT00000042200 3 1 2 80 14 77079507 77081919 AGGACAAAGAACTGGTCCTG 60 77081959 77081980 GTTGTACCCATAGAGGAAGGAG 60 NA Rattus norvegicus 81 Rapgef3 ENSRNOG00000059961 ENSRNOT00000078644,ENSRNOT00000083182 3 2 2 80 7 139244818 139245129 AGGCAGGAACCGATATACG 59 139244756 139244775 GAATCCGGTCTCATAGCCTC 60 NA Rattus norvegicus 81 LOC498369 ENSRNOG00000020730 ENSRNOT00000028149,ENSRNOT00000077942 2 2 2 80 10 89470618 89471500 TCTAACACCCTCATGCTTCC 60 89471540 89471561 CAAATTCTCATCCACGAATGCT 60 NA Rattus norvegicus 81 Igsf5 ENSRNOG00000028216 ENSRNOT00000082098,ENSRNOT00000032566 1 2 3 82 11 36749240 36749258 TGTGGCAGAGATGAAGGAC 59 36749304 36756783 CAATACTGTCCGGTGGAGG 60 NA Rattus norvegicus 81 Slc30a8 ENSRNOG00000004747 ENSRNOT00000079792 2 1 2 82 7 91865752 91867158 TTCATGTTGCTACAGCTGC 59 91867202 91867222 CAGATCAAAGCTACTGCTGAG 59 NA Rattus norvegicus 81 LOC100910563 ENSRNOG00000002628 ENSRNOT00000003545 1 1 2 84 1 67845676 67845695 GCTTATAGGGCTGAATTGGG 59 67832563 67845631 GGAAATTTGAAGGAAACGTGG 58 NA Rattus norvegicus 81 Fhl1 ENSRNOG00000000875 ENSRNOT00000084594,ENSRNOT00000043820,ENSRNOT00000087274 2 3 5 81 X 159169771 159169790 GTATTACTGCGTGGATTGCT 59 159169833 159171039 TTTACCAAACCCAGTGATGG 58 NA Rattus norvegicus 81 Cyld ENSRNOG00000014048 ENSRNOT00000091626 2 1 2 83 19 19267516 19286057 AGACTCAACTTTATTCTGGCAG 59 19267454 19267472 ATGTCCGGGTCATCATAGC 59 NA Rattus norvegicus 81 Cyld ENSRNOG00000014048 ENSRNOT00000091626 3 1 2 86 19 19267516 19286060 CTTAGACTCAACTTTATTCTGGCAG 60 19267454 19267472 ATGTCCGGGTCATCATAGC 59 NA Rattus norvegicus 81 Ptprr ENSRNOG00000004483 ENSRNOT00000006401 1 1 2 80 7 59065906 59065924 TGCATCTGGTCAAGACCTC 59 59065966 59215417 ATATCCATTTGCAGTGTCACC 59 NA Rattus norvegicus 81 Gpd2 ENSRNOG00000033824 ENSRNOT00000088589 1 1 3 93 3 43293237 43294087 TGTTGACACAGTATAGGATGGT 59 43294141 43294159 ATTATAGGCAGCGGAGCTG 60 NA Rattus norvegicus 81 Hdlbp ENSRNOG00000031479 ENSRNOT00000085448,ENSRNOT00000051155 3 2 3 80 9 100564153 100564171 GAATCCAGCAGATCACTCG 58 100562614 100564109 GCTCTACACTGTGAACTGG 58 NA Rattus norvegicus 81 Tbc1d9 ENSRNOG00000003496 ENSRNOT00000065558 1 1 2 93 19 24416311 24416329 GGGCAGATTTGATTGAGCA 59 24416386 24418159 AGATGTTCAGCCACATTGC 59 NA Rattus norvegicus 81 Pou2f1 ENSRNOG00000003581 ENSRNOT00000087096 2 1 2 100 13 84084287 84084305 GTATTCGCCAATGCAGGAG 59 84083827 84084223 ATGAAGCAATCTGGGTTGC 59 NA Rattus norvegicus 81 Emx2 ENSRNOG00000009482 ENSRNOT00000012564 3 1 1 83 1 280637489 280637507 CAGCCTTACGGAAACTCAG 58 280639485 280639503 GAGCCTTCTTCCTCTAGCT 58 NA DesignNoJunction Rattus norvegicus 81 Tacc2 ENSRNOG00000020457 ENSRNOT00000077908 1 1 4 81 1 201155668 201164782 CTCCACAGAGGACTTCTTCAG 60 201164825 201164843 TCTCCTTGCTTCTGTGGAG 59 NA Rattus norvegicus 81 Pfn2 ENSRNOG00000017427 ENSRNOT00000023469,ENSRNOT00000063986,ENSRNOT00000064506 3 3 3 122 2 148050380 148050398 ATAACCTGATGTGCGATGG 58 147957464 148050294 CATCTATTTCTGCTGGCGT 58 NA Rattus norvegicus 81 Magi3 ENSRNOG00000019885 ENSRNOT00000088095,ENSRNOT00000026952 1 2 2 80 2 206591828 206591847 TCAGAAAGGATCGATTGACC 57 206575542 206591785 CTTGTAGTGCATGGGATGG 58 NA Rattus norvegicus 81 LOC103693683 ENSRNOG00000046663 ENSRNOT00000071728,ENSRNOT00000091821,ENSRNOT00000071897,ENSRNOT00000073643 3 4 4 84 13 91155995 91156013 ATTCTGGAAGCCAATGGCT 60 91154513 91155158 TTCAGAAGATCTCCCGTCTG 59 NA Rattus norvegicus 81 LOC103693683 ENSRNOG00000046663 ENSRNOT00000071728,ENSRNOT00000091821,ENSRNOT00000071897,ENSRNOT00000073643 3 4 4 84 13 91228840 91228858 ATTCTGGAAGCCAATGGCT 60 91154513 91227999 TTCAGAAGATCTCCCGTCTG 59 NA Rattus norvegicus 81 LOC498435 ENSRNOG00000002134 ENSRNOT00000071877,ENSRNOT00000040985 2 2 3 80 14 5938303 5940714 AAATTGATCCCAGGCAACAG 59 5940754 5940775 CCGGTTAGGAAAGAATTGTCTG 59 NA Rattus norvegicus 81 Map7d3 ENSRNOG00000027831 ENSRNOT00000071516 1 1 2 80 X 159198650 159198759 ATGTACACCTGATGGTTCTG 57 159198589 159198609 TGACGTTTCTGTTCTTCTCTG 58 NA Rattus norvegicus 81 Tnnt3 ENSRNOG00000020332 ENSRNOT00000066896 2 1 5 96 1 215673201 215676241 GGAACCAGAGGAGAAACCA 59 215679173 215679191 GTTCTGACGCTTCTTCTGG 59 NA Rattus norvegicus 81 AABR07054405.1 ENSRNOG00000057817 ENSRNOT00000089719,ENSRNOT00000080543,ENSRNOT00000083476 2 3 4 85 3 152615421 152615748 GATCAAGACCAGGCTCTGG 60 152615792 152615815 CTATAGACAACAGCTTTGGTTACC 60 NA Rattus norvegicus 81 Acacb ENSRNOG00000000658 ENSRNOT00000000821 3 1 4 147 12 48164878 48164898 TGTCAGCCATTGACATGTG 59 48162032 48164214 TCACATAAACCTCCAGGGAC 59 NA Rattus norvegicus 81 LOC102551064 ENSRNOG00000037159 ENSRNOT00000056084 3 1 1 60 2 205714703 205714724 ATGAATACGAAGAGGATGAGGA 59 205714742 205714763 CGATCTTCATCGTTATCTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc162 ENSRNOG00000037668 ENSRNOT00000000340 1 1 1 80 20 46280237 46283863 CCTGAAGCAGATGAGAAACC 59 46280176 46280194 TTCAGTAGCTCCTGCACTC 59 NA Rattus norvegicus 81 Cela3b ENSRNOG00000021619 ENSRNOT00000036788 3 1 1 80 5 155764811 155764829 TGTAACACCCTGAAGAAGC 57 155763939 155764767 GTTGTTGGCTATGGTCTCC 58 NA Rattus norvegicus 81 Myo1f ENSRNOG00000008409 ENSRNOT00000011513 2 1 1 80 7 18463329 18463507 ACTATCAGCTTCTGGAAGGG 59 18463545 18463568 TGAGGTAGTAATAGTAGTCTGGTG 59 NA Rattus norvegicus 81 Olr4 ENSRNOG00000047512 ENSRNOT00000072272 2 1 1 84 1 70454617 70454636 TAACTTGCATGACGCAACTC 59 70465281 70465299 TAGCGGTCATAAGCCATGG 60 NA DesignNoJunction Rattus norvegicus 81 C2 ENSRNOG00000051235 ENSRNOT00000060607 2 1 1 80 20 4552284 4553461 TCTGTCTGCTACAAAGATCAC 58 4552224 4552243 ATTCATCATGAGGTAGACGC 58 NA Rattus norvegicus 81 Smtnl2 ENSRNOG00000015157 ENSRNOT00000020379 1 1 1 80 10 58961548 58961798 GCTATCAGCATGTGGACCT 60 58961486 58961504 AGAATGAGTGCACTAGGGC 60 NA Rattus norvegicus 81 Rims1 ENSRNOG00000011000 ENSRNOT00000079684 2 1 5 81 9 28664245 28732702 GTGTCCTGGTTATGTGGGT 59 28664182 28664200 CTTCCAAAGAACCACGCTC 59 NA Rattus norvegicus 81 Rims1 ENSRNOG00000011000 ENSRNOT00000086967 2 1 5 82 9 28732747 28732765 ATTGTCGCACCAAGTTCTG 59 28664241 28664264 GCATACCCACATAACTTTGGA 58 NA Rattus norvegicus 81 Rims1 ENSRNOG00000011000 ENSRNOT00000091865,ENSRNOT00000015453 2 2 5 80 9 28732747 28732766 TATTGTCGCACCAAGTTCTG 59 28664247 28730319 CCACATAACCACTTTGTCCTC 59 NA Rattus norvegicus 81 Becn1 ENSRNOG00000020513 ENSRNOT00000027868,ENSRNOT00000082010 3 2 6 80 10 89217315 89217336 GCTAATAGCTTCACTCTGATCG 59 89217151 89217274 TCCAGTGACCTTGAGTCTC 58 NA Rattus norvegicus 81 Pxn ENSRNOG00000001149 ENSRNOT00000064115,ENSRNOT00000047466,ENSRNOT00000081134 2 3 3 82 12 46801167 46801916 CATCTTGGATAAAGTGGTGACAG 60 46801107 46801125 CAAAGAAGGCTCCACACTG 59 NA Rattus norvegicus 81 Trim23 ENSRNOG00000012354 ENSRNOT00000016596 1 1 2 80 2 34257859 34257879 GAAATATTAGCCCATGGACCT 58 34257917 34258833 CTCCAGAACTGAAAGATAGTGAG 59 NA Rattus norvegicus 81 Lrrc27 ENSRNOG00000017538 ENSRNOT00000049631 3 1 2 86 1 211559594 211559613 AGAGGATGGATGACACTCAC 59 211559662 211560197 TGTCAGCAGAGCTTCTCTG 59 NA Rattus norvegicus 81 Rgs12 ENSRNOG00000030568 ENSRNOT00000040215,ENSRNOT00000045068 2 2 3 149 14 81014708 81037662 TTGATGATCTCGAGTCTGCA 59 80995575 80995593 AGCTTGCAACTCTCCTCTC 59 NA Rattus norvegicus 81 Brca1 ENSRNOG00000020701 ENSRNOT00000083111,ENSRNOT00000028109 1 2 2 81 10 89403466 89403486 GGAGGAAAGTGGATAGTTAGC 58 89401999 89402927 CTTCAAATTCATGCACACTCAG 59 NA Rattus norvegicus 81 Kcnh7 ENSRNOG00000007528 ENSRNOT00000085246 2 1 2 81 3 48809685 48810131 TGTCAAAGTTTCACGTTCCTG 59 48801401 48801420 TGAATCTGATGTGGATCCCA 59 NA Rattus norvegicus 81 Unc5c ENSRNOG00000029071 ENSRNOT00000050330 2 1 2 84 2 247333492 247349538 CATGCAGGGATTCATTTACCC 60 247351501 247351519 GTCATCTGAGTCAGGAGCA 59 NA Rattus norvegicus 81 Med13l ENSRNOG00000001120 ENSRNOT00000081780 2 1 3 81 12 43576724 43576798 CTTTCAGTGGCTGAACTCAC 59 43576662 43576683 CTGAAATTATGGGTCCACAGTC 59 NA Rattus norvegicus 81 Med13l ENSRNOG00000001120 ENSRNOT00000081780 3 1 3 82 12 43576726 43576799 GCTTTCAGTGGCTGAACTC 59 43576662 43576683 CTGAAATTATGGGTCCACAGTC 59 NA Rattus norvegicus 81 Pik3r1 ENSRNOG00000018903 ENSRNOT00000025687 1 1 2 80 2 31764122 31770170 AGCTTCTTGATTGTGATGCC 59 31764061 31764081 GATAGCGTTTGAAAGCATCTG 58 NA Rattus norvegicus 81 Clasp1 ENSRNOG00000002376 ENSRNOT00000086641 2 1 5 80 13 34489087 34489105 CTCCTCATCCTCAGGTTCC 59 34489149 34491429 GCAGTACCGTCTAATGACG 58 NA Rattus norvegicus 81 Hnf4a ENSRNOG00000008895 ENSRNOT00000011978 1 1 3 150 3 159902589 159941151 GAGTCCTTATGACACATCCC 58 159941264 159941282 CCTGAAGAATCCCTTGCAG 58 NA Rattus norvegicus 81 Slc10a6 ENSRNOG00000002057 ENSRNOT00000002819,ENSRNOT00000088508 2 2 2 80 14 7628486 7628505 CTCTGCCTCTACGTCTACAC 59 7628545 7629168 AAGGGTAATTCCTATGCTCTGG 60 NA Rattus norvegicus 81 Spink14 ENSRNOG00000045824 ENSRNOT00000073750 3 1 1 62 2 36011093 36011111 CTTCATTCGATGCTCCTGG 58 36011784 36011802 AATCAGTCCATGTGTAGGC 57 NA DesignNoJunction Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000010689,ENSRNOT00000056727,ENSRNOT00000087190,ENSRNOT00000086524,ENSRNOT00000089624 2 5 5 80 8 99640721 99640740 GAAGTCATGACTCTGGAGAG 57 99640782 99640901 AGCCTGGATTTCTATCTCCT 58 NA Rattus norvegicus 81 Stag1 ENSRNOG00000015389 ENSRNOT00000079618 1 1 2 80 8 109288153 109302685 CTTCCAAAGAGGATTTGTTGGT 59 109302724 109302744 TAACATTAGACAGGCACTGCT 60 NA Rattus norvegicus 81 G6pc ENSRNOG00000051344 ENSRNOT00000027957 2 1 2 85 10 89237701 89237719 AATAGCCACGATGGACTGG 60 89239716 89240105 AACACCTTGGTTCCTTGGA 59 NA Rattus norvegicus 81 Pc ENSRNOG00000019372 ENSRNOT00000087432 1 1 3 80 1 219833666 219836234 GGTACAAGGTACATAGAGGAGG 59 219836275 219836293 ACAGGTGAGATCATGCCAG 60 NA Rattus norvegicus 81 Gstm7 ENSRNOG00000018937 ENSRNOT00000025689 2 1 3 99 2 210725770 210725788 AGATACACCATGGGAGACG 59 210724970 210725276 CAATTAAGTAGGGCAGATTGGG 59 NA Rattus norvegicus 81 Dlc1 ENSRNOG00000010780 ENSRNOT00000090477 2 1 2 81 16 59077972 59077990 GACCACATCAGGGATTCCA 59 59078035 59219555 CTTCAATTTCTGCCAGCCT 58 NA Rattus norvegicus 81 Arpp21 ENSRNOG00000008919 ENSRNOT00000085161 1 1 3 157 8 120387454 120387472 CGATATACAACCCTCCCGG 59 120386557 120387333 CTGGACAGACTGAGTGACC 59 NA Rattus norvegicus 81 Tgm4 ENSRNOG00000004320 ENSRNOT00000091791 2 1 2 81 8 132135192 132135488 CAGCAGAACAGTGCTTGTC 60 132135532 132135551 TTGGTACTCAATCGTGTGGT 59 NA Rattus norvegicus 81 Wdr75 ENSRNOG00000003825 ENSRNOT00000083864 3 1 2 80 9 52695922 52695944 CTAAGGAGCTTACCTTTGTTCTG 59 52695980 52697361 CAACATATTCTCCCTCATTTCCG 60 NA Rattus norvegicus 81 AABR07007931.1 ENSRNOG00000049977 ENSRNOT00000072751 2 1 1 79 2 35484888 35484908 GGGTTGATTTCTGCAAATCTG 58 35482771 35482792 ATTAGAGCATGAGAGCTTAAGG 58 NA DesignNoJunction Rattus norvegicus 81 Hus1 ENSRNOG00000005141 ENSRNOT00000006852,ENSRNOT00000091671 3 2 2 80 14 89199536 89200240 ACCCTCTACTACCTTCTGAC 58 89199475 89199494 GTTTCCTTATGTCGATGTGC 57 NA Rattus norvegicus 81 Gstm6l ENSRNOG00000047108 ENSRNOT00000052403 3 1 2 82 2 210748641 210748659 AGAACCAGGTCATGGACAC 59 210747659 210748596 CAAGAACTCTGGCTTTCCAC 59 NA Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000011226,ENSRNOT00000090161 1 2 4 81 8 39185261 39185279 CAATGCCTGAAAGAGACCT 57 39184086 39185219 CCATTGTTGATACAGTAACCTG 57 NA Rattus norvegicus 81 Slc12a5 ENSRNOG00000018111 ENSRNOT00000065184 3 1 2 93 3 161426096 161438677 GAAGACGTCAAAGGTGACG 59 161438732 161438752 TGTTCCTGCCATCATACTCTC 60 NA Rattus norvegicus 81 Tpp2 ENSRNOG00000011194 ENSRNOT00000078220,ENSRNOT00000085267,ENSRNOT00000015393 3 3 3 80 9 50705166 50705186 GACTCAGCTAATGAATGGGAC 59 50705226 50706520 GCTTTCAGTCCTGAAAGTACC 59 NA Rattus norvegicus 81 Amy2a3 ENSRNOG00000055613 ENSRNOT00000087259,ENSRNOT00000087839,ENSRNOT00000086695 1 3 3 82 2 216347596 216347615 AAATTTGCTCAAGGTCTGGA 58 216346779 216347551 CACATAAATCCGGACACCA 58 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721,ENSRNOT00000072848,ENSRNOT00000077205,ENSRNOT00000077561 3 6 8 106 20 4363553 4363720 GAATGGAAACTGAACACAGGA 59 4363788 4363806 AGGAGGAGTGAACCATTGG 59 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468,ENSRNOT00000087055,ENSRNOT00000077655,ENSRNOT00000090518 3 5 8 80 20 4389074 4389093 CATGGATGAGCACAATGTGG 60 4388925 4389033 TTCAAATAGTCCGTGTCTCCA 59 NA Rattus norvegicus 81 AABR07008097.1 ENSRNOG00000026928 ENSRNOT00000036860 3 1 1 116 2 42727741 42727760 ATATGCTGAGACTGTGGCTC 60 42727867 42727887 CCTATGATAGTGATGCAACCC 58 NA DesignNoJunction Rattus norvegicus 81 Extl2 ENSRNOG00000014323 ENSRNOT00000091001,ENSRNOT00000019190 3 2 2 81 2 218967497 218967517 TTAATGGTAGACGATGACGTG 58 218967560 218970594 TCTGATCCGGAAATTGCTG 58 NA Rattus norvegicus 81 Tacc1 ENSRNOG00000016423 ENSRNOT00000035347 1 1 2 96 16 71653844 71657641 GTTTAATAACGAGTGGCTGCA 59 71661143 71661161 ATCTGTGAGATCACGGCTC 59 NA Rattus norvegicus 81 Tacc1 ENSRNOG00000016423 ENSRNOT00000088462 1 1 2 80 16 71653839 71656298 GTCGCGTTTAATAACGACCT 59 71657639 71657660 GTTTCGTATTTCTTCACCTTGC 59 NA Rattus norvegicus 81 Fgfr1 ENSRNOG00000016050 ENSRNOT00000029284 1 1 2 80 16 71281037 71282792 CAATGTCTCAGATGCACTGC 60 71280976 71280997 TTGTCTGTCTCTTTCTCCTCTG 60 NA Rattus norvegicus 81 Fgfr1 ENSRNOG00000016050 ENSRNOT00000029284 2 1 2 80 16 71281037 71282791 AATGTCTCAGATGCACTGC 58 71280975 71280995 GTTGTCTGTCTCTTTCTCCTC 58 NA Rattus norvegicus 81 Clk3 ENSRNOG00000030126 ENSRNOT00000068108,ENSRNOT00000080071 1 2 2 80 8 62528622 62529284 CTCTGAAGAGTTACATGCTCC 58 62528562 62528581 GGTCGAACTCTAACATCCTC 58 NA Rattus norvegicus 81 Clasp2 ENSRNOG00000009161 ENSRNOT00000012545 2 1 2 82 8 122137095 122139301 ATGCCTTGCTCTTAGGAGAC 60 122140414 122140432 GTCATCTGAGTGCATTCCG 59 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000048985 1 1 8 150 20 4483903 4483921 TACCAGCTAGCAGATGGAG 58 4484149 4484346 AACAGGGAGTTATCCTGGG 58 NA Rattus norvegicus 81 Kat6a ENSRNOG00000025174 ENSRNOT00000078743,ENSRNOT00000037389 2 2 2 80 16 73955726 73956394 TCCGAAGTGACCAATTTGTG 59 73955665 73955683 GTCGAAGATTCAGCTGGAG 58 NA Rattus norvegicus 81 Csk ENSRNOG00000019374 ENSRNOT00000026358,ENSRNOT00000091223 1 2 2 80 8 62407327 62407347 GAGTTTGGTGGACTATCTTCG 59 62407167 62407289 CAGACGTCTAGTGAGAATTTGAG 59 NA Rattus norvegicus 81 Unc5d ENSRNOG00000011858 ENSRNOT00000015879 1 1 2 80 16 67522515 67522533 GAGTGGACGTCATTGACTC 58 67522575 67527005 GAGAATTTCCTTGACGAACTG 57 NA Rattus norvegicus 81 Tstd2 ENSRNOG00000009724 ENSRNOT00000012915 3 1 2 91 5 61713163 61715430 GGTCTCAGAATGTTCATATTGTGG 60 61713095 61713114 CAGAACAGGTCAACACAAGC 60 NA Rattus norvegicus 81 Tstd2 ENSRNOG00000009724 ENSRNOT00000090566 3 1 2 88 5 61704746 61704765 GATAAGAGCAGGAGTCTGTG 58 61704273 61704696 AGTGGGTCTGACAAATACAC 58 NA Rattus norvegicus 81 Thsd1 ENSRNOG00000012108 ENSRNOT00000016859,ENSRNOT00000081297 3 2 2 95 16 74697099 74700695 TGACTATGTCCTTGGAGAAGC 60 74697024 74697042 AGGTAGTGGAAACCCACTG 59 NA Rattus norvegicus 81 Gad1 ENSRNOG00000000007 ENSRNOT00000084375 2 1 4 128 3 56873188 56873206 AGACACCCTAAAGTACGGG 58 56878171 56883653 TCTGATGGCATATTGGTATTGG 58 NA Rattus norvegicus 81 Spag11bl ENSRNOG00000031111 ENSRNOT00000046821,ENSRNOT00000047761 2 2 2 99 16 75146134 75147255 CTTACCATGAGCCTGGACC 60 75147318 75147336 TAGCCCACTTGTGTTTCCA 59 NA Rattus norvegicus 81 Ash2l ENSRNOG00000014875 ENSRNOT00000086891 3 1 2 92 16 71019131 71020120 GGAACCTAAATGGTGGAGC 58 71021819 71021837 CTCCATCTTGCTGCTTACG 59 NA Rattus norvegicus 81 Oog1 ENSRNOG00000027142 ENSRNOT00000083634 2 1 2 82 5 162247543 162247564 CTCAACTTCCCACATTCTACTG 59 162247607 162248288 CTTCTTCAGGCAAAGGCTG 59 NA Rattus norvegicus 81 Oog1 ENSRNOG00000027142 ENSRNOT00000083634 3 1 2 83 5 162165963 162246226 CTGATGAGGATGACTCTTCAG 58 162246271 162246289 GTAGCCTCTGAATTGCCAG 58 NA Rattus norvegicus 81 Src ENSRNOG00000009495 ENSRNOT00000080516 1 1 2 80 3 153582304 153582324 GACTATGAGTCACGGACAGAG 60 153582364 153582594 CACCTTCCTCGTGTTATTGAC 59 NA Rattus norvegicus 81 Pmepa1 ENSRNOG00000050404 ENSRNOT00000071853 3 1 1 268 3 171302446 171302464 TGAGCCACTACAAGCTGTC 60 171296061 171296079 ATCAGACAGCGAGATGGTG 60 NA DesignNoJunction Rattus norvegicus 81 Defb13 ENSRNOG00000038157 ENSRNOT00000058071 3 1 1 70 16 75028948 75028966 TTCCTTAATTGTTGCCGGG 59 75027250 75027268 ACCTTCTGTACAGTGTGCC 60 NA DesignNoJunction Rattus norvegicus 81 Spo11 ENSRNOG00000006732 ENSRNOT00000081823 3 1 2 98 3 170994210 170996205 TGCCCTCTAGTTCTGAGGT 60 170996267 170996285 TGTCTATTGTGAAGGCGGG 60 NA Rattus norvegicus 81 Dgkz ENSRNOG00000017737 ENSRNOT00000024280 2 1 2 124 3 80855387 80873546 GGAAAGCCATCACCAAGTC 59 80855002 80855299 ATACGCTGCTGACTCACTC 60 NA Rattus norvegicus 81 AABR07026539.1 ENSRNOG00000031681 ENSRNOT00000040315 2 1 1 85 16 82439363 82439383 AGCTATTAATAACTGCCCTCC 57 82439185 82439203 CTGCCAAATTCCAGCAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Pacsin3 ENSRNOG00000014204 ENSRNOT00000057176,ENSRNOT00000080266 1 2 2 80 3 80079252 80079271 GCGACTTCTCTTCTTCAAGG 59 80079314 80079435 AGCTCATGGAACTTGTCAC 58 NA Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000060522 ENSRNOT00000083901 1 1 1 60 5 5737100 5737118 AGTTCTGGGCTGTAGTACG 59 5737058 5737079 CATATTGATGCCGAACTTAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054535 ENSRNOT00000081009 1 1 1 60 5 22905703 22905723 GGAAGACACTGTGATCATGAG 59 22905663 22905683 TTGGTGTGCAATAGGTAAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057518 ENSRNOT00000080644 3 1 1 60 5 122109301 122109319 GATCTCAGGACGAACGAGG 60 122109343 122109361 GGGAATCACAAGGGTTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Gpkow ENSRNOG00000022939 ENSRNOT00000039000 1 1 1 80 X 15649835 15649853 AAACAAGCACCGTGTTGAC 60 15649670 15649793 CCAGAGACTTCTTGGATTCCT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052881 ENSRNOT00000080226 3 1 1 68 2 215196618 215196637 TTACTGATATGGCTGCTGTG 58 215196569 215196587 CACAAGTCAGAACACGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000059464 ENSRNOT00000080601 1 1 1 60 2 161559622 161559640 TGAAGAACGCATCTAGCTG 58 161559662 161559682 GTGTCCATGATCAATCTGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114070.1 ENSRNOG00000055627 ENSRNOT00000077992 2 1 1 77 15 35953353 35953373 GGGTTGATTTCTGCAAATCTG 58 35953410 35955777 TAGAGCATGAGAGCTTAAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000057918 ENSRNOT00000087318 2 1 1 60 2 79604305 79604324 CATGTGCATCAGTAGGTAGC 59 79604264 79604284 GTCAGAACACTGAGTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056607 ENSRNOT00000087060 2 1 1 60 2 263540965 263540983 TGTGCATCCTGTCTGTCAG 60 263541004 263541025 AATACTGAGCATTGACATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053246 ENSRNOT00000089032 3 1 1 60 11 26461984 26462002 AGGCTATGTCTACCCTCAG 58 26462023 26462044 ATGTTAGGCTAGTAGTCATTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052585 ENSRNOT00000087324 1 1 1 65 8 13762767 13762785 AGATCTGGCTGTGACACAG 59 13762812 13762832 ACCTTACTAGACAGGTTAGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058634 ENSRNOT00000087436 1 1 1 60 8 61160885 61160903 ACAATTCAGTGAGAGCAGG 58 61160843 61160864 TGGGATGATTTACAGATTCGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000060852 ENSRNOT00000091123 3 1 1 60 11 70879923 70879942 TGACAGAGTTTGGAACAGAC 58 70879965 70879983 CAGCTTAGAGGAAAGCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC109100.2 ENSRNOG00000057827 ENSRNOT00000090916 1 1 1 80 15 33342050 33342070 CTGGTACCATTGTCTACTGTG 58 33341814 33342008 CATGCAGTGTAGCCATGAC 59 Novel Rattus norvegicus 81 ACEA_U3 ENSRNOG00000056601 ENSRNOT00000089049 1 1 1 60 2 146467031 146467052 TTTGCCATTGATGATCGTTCTC 60 146467073 146467091 ACTCAGACTGTGTTCCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054664 ENSRNOT00000089768 1 1 1 60 8 95093802 95093822 AAAGAGGCCATATCTACCCTC 59 95093762 95093786 GGCTACTAATCATTAAGATGCTCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051997 ENSRNOT00000087319 3 1 1 61 8 131897371 131897392 CATTACAGAGAAGATTAGCACG 57 131897331 131897349 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056349 ENSRNOT00000089951 2 1 1 60 2 198772349 198772369 CTAGGAGTTGGAATAGGAGCT 59 198772309 198772327 GTACTGCAGTACCAGGTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056349 ENSRNOT00000089951 3 1 1 60 2 198772340 198772359 GAATAGGAGCTTTCTCCGTC 58 198772299 198772317 GTTCCTGGAGGTACTGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054199 ENSRNOT00000081328 3 1 1 61 2 84226315 84226333 GCTGATCCCTGTGATTTCC 58 84226272 84226292 CCCTACTGCCACAAATTATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD45 ENSRNOG00000053795 ENSRNOT00000083849 2 1 1 62 2 260115222 260115240 GGTCAATGATGTGTTGGCA 59 260115178 260115199 TAGAGCTCAAATGTTAGGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07046763.1 ENSRNOG00000059973 ENSRNOT00000089152 1 1 1 80 5 5690263 5691748 TCAGAGCAGGAGTTCTTACC 59 5690202 5690220 TGAGCATGACCTCAGTGAC 59 Novel Rattus norvegicus 81 SNORA44 ENSRNOG00000059045 ENSRNOT00000078184 3 1 1 60 8 104069841 104069859 TTCATCTCCAACTGCATGC 59 104069799 104069817 CACTGTGATAACCTGGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000052850 ENSRNOT00000085603 3 1 1 70 8 23323445 23323464 AGCCGATTAAGTCCCTTTCC 60 23323394 23323412 ATTACCAAGGAGGCTGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051395 ENSRNOT00000079119 2 1 1 60 16 25809420 25809442 TATAGAGATTAGCATGGTCCCTG 59 25809462 25809480 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033910.1 ENSRNOG00000052102 ENSRNOT00000080403 3 1 1 83 11 43932700 43932725 GTCTGTTTCACTATTCGGATCTC 59 43932766 43932786 GCAGCCGGTATATCTTTATCC 59 Novel Rattus norvegicus 81 SNORD16 ENSRNOG00000054329 ENSRNOT00000083337 1 1 1 60 8 69123722 69123741 TCTTACTCTGTTCACAGCGA 59 69123764 69123782 TCGTCAACCTTCTGAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD16 ENSRNOG00000054329 ENSRNOT00000083337 2 1 1 60 8 69123723 69123741 CTTACTCTGTTCACAGCGA 57 69123765 69123783 TTCGTCAACCTTCTGAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059821 ENSRNOT00000081575 1 1 1 60 8 22717963 22717985 GGAATAAAGAGGCTTAGTATGGC 59 22717925 22717945 CGGAATATTCGCAGATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058394 ENSRNOT00000086778 2 1 1 60 16 52549556 52549575 ACAAACACTGATGTTGGACG 59 52549515 52549534 GTACCATCCTTGTGCATAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073381.1 ENSRNOG00000027052 ENSRNOT00000030115 3 1 1 60 8 33345308 33345327 TGAAACAACTGGAGGATCTG 58 33345267 33345285 CCTGTCACTTTGGAGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128059.2 ENSRNOG00000056737 ENSRNOT00000080388 3 1 1 70 8 116880149 116880167 AATCTCTGGAGTCAGAGGC 59 116880097 116880115 TAACCTGGTCCTGACACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056684 ENSRNOT00000092171 1 1 1 60 16 46532722 46532742 TTACTTCAGAAGCATGTAGCC 58 46532763 46532782 GTAGGGACCTTGCTAATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000058810 ENSRNOT00000086906 2 1 1 61 16 71275033 71275056 GGCTGAATACTGTGTTCTTTAGTC 60 71275074 71275094 ACTTTACTCTTGCATGGTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054744 ENSRNOT00000087277 3 1 1 60 16 71162951 71162969 AAGATTTCAGGGCCATTGC 59 71162909 71162928 TGGACCTACAGTTCTAGACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041834 ENSRNOT00000063587 1 1 1 64 6 44933698 44933719 TCAAATGGTCTTGTCTGATCTC 58 44933744 44933762 TTTCCTACCCAAACACTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000061649 ENSRNOT00000086337 1 1 1 80 1 121563651 121563671 GGGTCTATGTCGATGATAGCA 59 121563710 121563731 CTCAGCGTAATACTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041036 ENSRNOT00000062789 1 1 1 60 6 105867461 105867481 GCCATACCATTCTAACAGCTC 59 105867502 105867521 GTACTGACAAGGTCTGACCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041036 ENSRNOT00000062789 3 1 1 60 6 105867488 105867506 TTGGAAGCTAAGCAGGGTC 60 105867530 105867548 ATCATTGCCAGGTGGTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061462.2 ENSRNOG00000058338 ENSRNOT00000091689 2 1 1 60 4 126592901 126592922 AAATACAGTTAGAGGCCTTTGC 59 126592942 126592961 ACACCATCAGACTTCAGAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033745.2 ENSRNOG00000057895 ENSRNOT00000085972 1 1 1 107 11 38776461 38776479 TTAGCACAGATGAAGCAGC 58 38776555 38776573 CTTTAACCTTTCCTGCGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07012302.1 ENSRNOG00000009115 ENSRNOT00000091813 2 1 1 64 2 192520891 192520909 ATACCAGCAGAAATGCCCT 59 192520937 192520955 TCTTGGGTGGACACTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000056437 ENSRNOT00000088652 2 1 1 61 6 133832361 133832385 GATGATAGTTACCAAGGTATGAGAG 59 133832404 133832422 GGACTTCTGAGCTTCAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059882 ENSRNOT00000090941 3 1 1 60 9 55114567 55114589 GATACAGAGAAGATTAGCATGGC 59 55114529 55114547 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042316.1 ENSRNOG00000056242 ENSRNOT00000085142 3 1 1 60 X 152584670 152584689 TATTTGTCTGAGCATGCACC 59 152584629 152584647 GATTCCTGCTCAGGAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037347.1 ENSRNOG00000046532 ENSRNOT00000073358 2 1 1 60 X 19215764 19215783 TTTGTGTTGCCTAGCTTGTC 59 19215723 19215747 CCTAGTATGTGACTACATACTAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055947 ENSRNOT00000084094 2 1 1 106 2 205485330 205485348 GGTTGATTCGGCTGATCTG 59 205485242 205485260 GAAGGTCGTCCTCTTCGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057402 ENSRNOT00000077720 1 1 1 60 3 58127169 58127187 TCACTTCAGCTGCAAACAG 59 58127205 58127229 CTTGTACAAAGGTCATACTAACCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057402 ENSRNOT00000077720 2 1 1 61 3 58127169 58127187 TCACTTCAGCTGCAAACAG 59 58127207 58127230 CCTTGTACAAAGGTCATACTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC131360.1 ENSRNOG00000039470 ENSRNOT00000060486 2 1 1 104 18 30568337 30568355 TTTCGTGCTCTACCCACTG 60 30568466 30568484 CTTGAGCAGCTGGAATGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008099.1 ENSRNOG00000048490 ENSRNOT00000071308 2 1 1 61 2 42830348 42830366 CCAGAGGGATCCATGAGAC 59 42830390 42830409 CTTGCGAATATCCACATCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000059722 ENSRNOT00000089002 1 1 1 60 2 409819 409840 TGATCATGGACACTATGAACAC 58 409780 409798 AGATAGGTGTAGTCCAGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000059854 ENSRNOT00000086430 3 1 1 60 2 188074640 188074659 GCCTTAAACCATTGCCTAGC 60 188074682 188074700 AACTGCACAACCATCAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056635 ENSRNOT00000079950 1 1 1 60 X 14540542 14540560 TTGTGCTGATTCCTGACTC 58 14540584 14540602 AATGCAGTTGACTTTCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070278.1 ENSRNOG00000051681 ENSRNOT00000077762 3 1 1 68 8 63291867 63291885 AAGGAGGAAAGAAAGGCAC 58 63291683 63291701 GTGCCATGTGTAAAGGTGG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000052438 ENSRNOT00000089877 3 1 1 60 6 80946321 80946339 CCTAAAGGCATTGCAGGTG 59 80946279 80946297 TCCTTTCTGCCACCTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053892 ENSRNOT00000086401 2 1 1 70 2 166764118 166764136 TCACATGTGCGTCAGTAGG 60 166764066 166764085 TATTCAGATGCTCACAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053416 ENSRNOT00000083494 1 1 1 60 2 53555832 53555852 TATACAAGTAGCTGTGCTCCC 59 53555792 53555811 CTACAATGGACCTTGAGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031674.3 ENSRNOG00000053248 ENSRNOT00000087454 3 1 1 106 18 25360550 25360570 GACTGTATTACTCCAGCACTC 58 25360457 25360478 TCAAGTGACTGGTAACATACTC 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000057148 ENSRNOT00000081521 3 1 1 60 9 85010669 85010689 AAAGAGGATGAAGAGGACGAC 60 85010710 85010729 TAACCTCAACTGAAGACCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC106663.2 ENSRNOG00000055372 ENSRNOT00000088751 2 1 1 69 14 86711703 86711726 CAATTGAAATGGATGCAGTCAG 59 86711756 86711774 TAAACACCTTCCAGCTCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AC098750.3 ENSRNOG00000056073 ENSRNOT00000089103 1 1 1 104 2 188667442 188667463 AGAGATCATCTAAAGCCATCG 58 188667532 188667550 TTGTGACGTAAGGATCCCA 58 Novel Rattus norvegicus 81 AABR07026912.1 ENSRNOG00000054922 ENSRNOT00000089748 3 1 1 60 17 4697833 4697854 TCTATACACATATGACCATCGG 57 4697792 4697815 TGGGAAATTGTAGAGAAGTTCC 58 Novel DesignRelaxed Rattus norvegicus 81 ACEA_U3 ENSRNOG00000058438 ENSRNOT00000080772 2 1 1 60 10 74757917 74757940 CGTTACTAGAGAAGTTTCTCTGAC 59 74757959 74757977 CTATGTCTCGTCCTCGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004924.1 ENSRNOG00000050663 ENSRNOT00000075021 1 1 1 80 1 168073013 168073031 CACTCGTGTCAACAGTCTC 58 168073072 168073095 ACATAGGAGAAGAGGATAAGGG 58 Novel Rattus norvegicus 81 AABR07068593.1 ENSRNOG00000057081 ENSRNOT00000079170 2 1 1 209 9 110721471 110721489 TAGTGTGGAGGTCAGAGGA 59 110731673 110731691 TCTTGTTGCCTTTGTCCCA 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000059305 ENSRNOT00000087271 2 1 1 60 7 80863444 80863464 GTTTGTCAGTAGGTGACAGAG 58 80863483 80863504 TATAGGTCAGAACACTGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120750.1 ENSRNOG00000050522 ENSRNOT00000075001 2 1 1 60 7 123815628 123815646 ACCTGTTCTTGGATCATGG 57 123815586 123815605 GCACAGAGATGTTAAGTGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060944.1 ENSRNOG00000057963 ENSRNOT00000087546 1 1 1 90 4 101531419 101531825 GATCCAGGAAACCAGTGGT 59 101531879 101531897 CTTGCAAGAGATGGAGGCT 60 Novel Rattus norvegicus 81 AABR07037923.2 ENSRNOG00000049961 ENSRNOT00000072460 1 1 1 80 X 35366829 35366851 AGATTTCACCTCACATGCG 58 35366894 35366913 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055351 ENSRNOT00000089531 1 1 1 60 1 277058226 277058244 GTCAGTAGGTGGCAAAGAG 58 277058184 277058202 TCAGATGGTCACAGGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000056004 ENSRNOT00000088560 3 1 1 60 16 47954616 47954637 GTATGAATGCTATCCACAACGG 60 47954577 47954596 GCAGGCTTCATACACTACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045363 ENSRNOT00000070630 1 1 1 60 16 59859190 59859208 GAATGCTCCTGATCTCGTC 58 59859231 59859250 GATGCCCAGCATAATTTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045363 ENSRNOT00000070630 3 1 1 62 16 59859188 59859207 TTGAATGCTCCTGATCTCGT 59 59859231 59859250 GATGCCCAGCATAATTTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055207 ENSRNOT00000085379 1 1 1 60 X 139701078 139701096 GAGAAGATTAGCATGGCCC 58 139701120 139701138 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054927 ENSRNOT00000081233 1 1 1 60 10 28417698 28417719 AAATACACTGACTATCAGGCTC 58 28417740 28417758 AATGGGAACATCTCCACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000055256 ENSRNOT00000082249 3 1 1 60 X 76845010 76845028 TATCCTCTATCCGAGGCCA 59 76845051 76845070 CTCCTGTCCCATCTCTTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051985 ENSRNOT00000080273 2 1 1 72 6 67902182 67902200 TTTGAGGCACGATTGTTGC 60 67902234 67902254 TAGAGAATGATTGTGGTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000054106 ENSRNOT00000078342 2 1 1 60 X 145875893 145875913 GATGAAGAACATGGCTAGCTG 59 145875853 145875873 GTCCATGATCAATGTGTCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052316 ENSRNOT00000081003 1 1 1 60 17 10713443 10713462 GATTCGGTTGATATGGCTGG 59 10713484 10713503 GGGAGGAACAAACATGAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053049 ENSRNOT00000087209 2 1 1 60 2 67847672 67847691 CACACTGCTCCATGTATGTC 59 67847711 67847732 GAAAGTTAGTCCTCTTACACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056408 ENSRNOT00000084456 3 1 1 60 6 46921265 46921284 TCACATGTGCTTCAGTAGGT 59 46921306 46921325 TCAGAACACTGAGCATAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027752.4 ENSRNOG00000057799 ENSRNOT00000077370 2 1 1 73 17 43777486 43777504 TTGTTGAGCTCCTCATCGT 59 43777541 43777559 AGAGACAACAAGAAGACGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067743.1 ENSRNOG00000056312 ENSRNOT00000081493 1 1 1 62 9 60496705 60496723 AACATGTCCTTGCCCTCTC 60 60496749 60496767 CATGTCAGTGCCATCACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD105 ENSRNOG00000060532 ENSRNOT00000077761 2 1 1 60 8 21906942 21906961 TCCTGTCTCATGATGATCCC 59 21906984 21907002 CGTTTACTTTGAAGCCTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057113 ENSRNOT00000084394 1 1 1 60 10 88896519 88896537 GAGAAGATTAGCATGGCCC 58 88896561 88896579 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096051.1 ENSRNOG00000049764 ENSRNOT00000071702 1 1 1 60 10 15615954 15615974 TAGAGCCCATAGTTTCAAGAG 57 15615914 15615935 GAATAGCCAATAAACTGCAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052638 ENSRNOT00000079865 3 1 1 60 9 35610509 35610528 ATACAAGTAGTTGTGCTCCC 57 35610468 35610487 CCTACAATGGACCTTGAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054602 ENSRNOT00000080479 1 1 1 60 16 37214213 37214231 CTGCTGTATCACATGTGCG 59 37214254 37214273 GTGTGCATAGACATAGCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012274.1 ENSRNOG00000059604 ENSRNOT00000090155 3 1 1 62 2 191986143 191986161 GTGGGTTGTGGAAAGACCT 60 191986099 191986117 ACCACCGCTATAGTAACCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038624.1 ENSRNOG00000055606 ENSRNOT00000091191 1 1 1 60 X 57058452 57058470 CCAAACCAGAACTGGAGAC 58 57058242 57058430 TTGTAACTTCCCACTACACTG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA42 ENSRNOG00000058244 ENSRNOT00000087463 3 1 1 64 10 37601001 37601021 ATGGGTTTGGATTTATGGCAG 59 37600957 37600975 TTGATCTAGCACGGGACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058858 ENSRNOT00000086322 2 1 1 60 3 40696291 40696313 CGATACAGAGAAGATTAGCATGG 59 40696253 40696271 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016966.1 ENSRNOG00000051721 ENSRNOT00000087303 2 1 1 60 15 5619899 5619919 CATCACTGTGATCTTGATGGC 60 5619940 5619959 AGGCCTCAGTAGAAAGAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039541.1 ENSRNOG00000002321 ENSRNOT00000003156 2 1 1 60 X 79489643 79489665 GGAAACCCATATCATCCATACCT 60 79489685 79489703 GGCCACATTGAGAATCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036974.1 ENSRNOG00000030819 ENSRNOT00000047059 3 1 1 60 X 8646162 8646180 GCAAGAGAAGACTTTGCCA 58 8646202 8646222 CTCTCAGATTGCTTTCATCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1305178 ENSRNOG00000007532 ENSRNOT00000076713 3 1 1 81 3 9820039 9820057 ATCCTTTCCAAATGGCGAC 59 9818934 9819995 TCCTCTTCACTGACCTTGTC 59 Novel Rattus norvegicus 81 AABR07019341.1 ENSRNOG00000058766 ENSRNOT00000085607 3 1 1 71 15 100348707 100348726 TAGCTAGAGGCTGACAACTG 59 100348655 100348673 GTATTTGCACATGGGTGCC 60 Novel DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 5S_rRNA ENSRNOG00000044660 ENSRNOT00000069927 3 1 1 60 6 116965721 116965739 CATGCCTGATCTCAGAAGC 58 116965679 116965700 GGAATTCTCCCATCTAAGTACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054135 ENSRNOT00000088547 2 1 1 60 15 24285206 24285226 TTGGATTCCAGATATGCTGAC 58 24285248 24285266 ATTATGCAGTCCGGTTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038795.1 ENSRNOG00000055102 ENSRNOT00000088653 3 1 1 80 X 60864191 60864278 CTCTCCTGAGTTAGGTGCT 58 60864129 60864148 AAATGTGCACTTCTGTCCTC 59 Novel Rattus norvegicus 81 AABR07072237.1 ENSRNOG00000054404 ENSRNOT00000090804 3 1 1 80 11 60254050 60256227 CTGTGAGCAAGAATCAGAGTC 59 60256268 60256287 ATGGTAACGTTTCTTCCCAG 58 Novel Rattus norvegicus 81 AABR07007092.1 ENSRNOG00000034090 ENSRNOT00000048196 3 1 1 61 1 280753901 280753920 CTGGCCAAATCTATTCACCA 58 280753859 280753877 TTGTGGACCCTGATGTGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051665.1 ENSRNOG00000053446 ENSRNOT00000088394 3 1 1 60 3 18970801 18970819 CATGGAGGCTGAAGATGCT 60 18970843 18970861 TGTGGGTGGGTTACTACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056206 ENSRNOT00000079530 1 1 1 75 4 87048938 87048956 ATTGCACCCACTTCAACAC 59 87048881 87048899 GCATGTCTTCTTTGCAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC103024.2 ENSRNOG00000050786 ENSRNOT00000073403 1 1 1 115 10 34317042 34317061 TCCAGCTTGAGATAAGTGGT 59 34317137 34317158 ACAACAGAAGTTCAAGCAGTC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000054977 ENSRNOT00000084647 3 1 1 60 9 18736070 18736088 TGAACATGCCTGGTTTCAC 59 18736109 18736130 AAGTTCTATCTAGACCCAACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051705 ENSRNOT00000084453 3 1 1 60 9 3985935 3985954 TTCTGAAATTGGACCGACAC 59 3985975 3985995 GTGTACATCATCCTTGCTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043247.1 ENSRNOG00000053972 ENSRNOT00000085796 3 1 1 81 19 26761156 26763068 AGCTCAACAACGTAATGAAGTC 59 26763107 26763128 AGGCTGAATAGTAAAGGTCTGG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000052588 ENSRNOT00000078490 2 1 1 60 10 7630999 7631021 GGAACGATACAGAGAAGATTAGC 59 7630961 7630979 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057041 ENSRNOT00000081931 2 1 1 60 1 136805722 136805740 GAACCCAACATGGTAGCAC 59 136805763 136805782 ATTTGTCTGCCTCTTTCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056274 ENSRNOT00000081458 3 1 1 60 4 132947855 132947874 TGCTATGTCATGTATGCGTC 58 132947814 132947833 CCTGAGCATAAACCTAGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC119015.1 ENSRNOG00000027511 ENSRNOT00000000260 1 1 1 60 10 76313006 76313024 ATGTTGTGATCGCCATGTC 59 76312964 76312982 GCTTCTTCTACCACCTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061134 ENSRNOT00000077411 3 1 1 60 4 132337529 132337550 AGATCTTCCACAAATAGAGGAG 57 132337490 132337511 GAGCACAGCTACTAGTATATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008298.2 ENSRNOG00000061553 ENSRNOT00000086270 3 1 2 73 2 52609172 52609190 AATGGGACTCAGAGGAAGC 59 52591316 52609135 TTCCTCTGAGTCCCATTCC 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000056979 ENSRNOT00000079569 2 1 1 60 10 55500052 55500075 CATACTAACATTGGAAGGTCACAG 60 55500094 55500112 TTGTGTCATCCTTGCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA7 ENSRNOG00000055242 ENSRNOT00000078549 2 1 1 60 17 86914837 86914855 GCTTTGGAAGAAGGAGGGA 59 86914877 86914897 AGCAAACTTGGAATGGAATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA9 ENSRNOG00000052314 ENSRNOT00000079150 2 1 1 76 2 179615879 179615897 CATTCCTACAGTGCTTGCC 59 179615935 179615955 CTATAACCTTGCTCTGGAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC111632.1 ENSRNOG00000030827 ENSRNOT00000047083 3 1 1 104 3 75794079 75794097 TTCAGACCAAGTTCTGCCT 59 75794159 75794185 CACATCCTTATTGTAAATCAGAGGG 60 Novel Rattus norvegicus 81 AABR07036920.1 ENSRNOG00000046063 ENSRNOT00000072290 3 1 1 60 X 7050824 7050843 AACCTTGTTGCTGAAATCCT 58 7050864 7050884 CTGCCTCATCCTTAACTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000051584 ENSRNOT00000089039 2 1 1 61 17 65512801 65512820 TGAGTTGGGAGGTGAATTCC 60 65512759 65512777 CTCTCCTGTCCAACCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056123 ENSRNOT00000086102 2 1 1 60 2 20742191 20742210 TATATGTGGGCCAGTAGGTG 59 20742232 20742251 TCACAGGTCTGAAGTCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054291 ENSRNOT00000082480 1 1 1 60 12 43997013 43997033 GCGATACAGAAGAGATTAGCA 58 43996973 43996992 AACGCTTCAAGAATTTGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA20 ENSRNOG00000057339 ENSRNOT00000077668 1 1 1 64 12 38496047 38496065 GATCCCTTCTCAGCCAGAG 59 38496001 38496019 ATGACGATGATCCACAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038355.1 ENSRNOG00000053508 ENSRNOT00000087302 2 1 1 60 X 46934424 46934444 AATGTGATGACTCATCAGAGC 58 46934383 46934401 GCAGGATACACAGTACTCC 57 Novel DesignNoJunction Rattus norvegicus 81 AC115307.1 ENSRNOG00000059655 ENSRNOT00000079980 1 1 1 80 X 1855164 1855185 GATAATCATCAGGACCATGCTG 59 1854965 1855123 TTGATGCCTTCCATCTGGG 60 Novel Rattus norvegicus 81 AABR07055288.1 ENSRNOG00000047893 ENSRNOT00000073083 1 1 1 92 7 1149784 1149803 TGGTAGAGGAACAAGGAGAG 58 1149857 1149878 CGAGTCCAAATTCTTTGGTG 57 Novel Rattus norvegicus 81 U1 ENSRNOG00000060220 ENSRNOT00000082761 3 1 1 60 10 40173228 40173247 GTTCTTCATGTATGCCCGTC 59 40173270 40173288 ATCAGTGCAGCTGAAACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC259244 ENSRNOG00000009273 ENSRNOT00000046857,ENSRNOT00000012293 2 2 2 97 5 77246516 77246535 CTGAGTTCAGACATCAAGGA 57 77246268 77246456 AGACAACGATCAGTCTTGG 57 Novel Rattus norvegicus 81 Rab37 ENSRNOG00000059793 ENSRNOT00000086469 2 1 1 80 10 103706603 103706622 TGATCCAATTCAAAGACGGG 58 103706662 103707622 TCACCACTTTATTCCTGAAGTC 58 Novel Rattus norvegicus 81 Rn60_2_1411.1 ENSRNOG00000051361 ENSRNOT00000076638,ENSRNOT00000076033 2 2 3 73 2 121357830 121357848 AAGACACAGATGCCCAGAC 60 121386149 121386167 GCTTCTGTCCAGACTCTCC 60 Novel DesignNoJunction Rattus norvegicus 81 Rn60_2_1411.1 ENSRNOG00000051361 ENSRNOT00000076638,ENSRNOT00000076033 3 2 3 74 2 121357830 121357848 AAGACACAGATGCCCAGAC 60 121386150 121386168 TGCTTCTGTCCAGACTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA41 ENSRNOG00000058518 ENSRNOT00000089467 3 1 1 61 1 16389861 16389879 AACAGTTGTAGCGTTCCTC 58 16389901 16389922 GAGGCATTAAATGGTGTAATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_14_0846.1 ENSRNOG00000051135 ENSRNOT00000076420,ENSRNOT00000089742 3 2 2 81 14 83884379 83885383 AAGTGAACTACGTCCCGTG 60 83884316 83884335 ATGGAGTAGCAGAAGGAAGG 59 Novel Rattus norvegicus 81 AABR07057644.1 ENSRNOG00000055655 ENSRNOT00000084233 2 1 1 67 7 82284582 82284602 GGAGCATCTATGGAAGTAACC 58 82284535 82284553 ATCAGAGAAGACTGCCTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000052520 ENSRNOT00000080959 1 1 1 60 10 93482425 93482444 CTTGACAAGGATGGAAAGCC 59 93482384 93482402 AAACAGTTGTTGCCTTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044820 ENSRNOT00000070087 3 1 1 60 2 113091318 113091337 CCCATGTCATCTGATCTCAG 58 113091277 113091298 CCTCCTTTCAAGTACTAACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC105811.1 ENSRNOG00000052254 ENSRNOT00000084618 2 1 1 60 3 123810469 123810491 AGTGTATAGAATGGTTGCCTAGG 60 123810431 123810449 GTGAGCCTAGCCTTTAACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910526 ENSRNOG00000040215 ENSRNOT00000081413 3 1 1 80 9 4658903 4663068 TGGACAAACAACTGTAAGTTCC 59 4658844 4658866 CATCCTGTAGAAGTGGTAGTAGG 60 Novel Rattus norvegicus 81 AABR07052587.4 ENSRNOG00000061162 ENSRNOT00000080016 3 1 1 70 3 63929875 63929895 TAATAACAAAGGCTCGCACTG 59 63929825 63929843 ATGTCCCTAAAGCCCTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055789.1 ENSRNOG00000008398 ENSRNOT00000011102 2 1 1 80 7 10068390 10068408 TTGCCAGAAATCCTCCAGG 60 10064925 10068346 CATCCAACCTTCGAACCAC 59 Novel Rattus norvegicus 81 LOC100912565 ENSRNOG00000050595 ENSRNOT00000089382,ENSRNOT00000059320,ENSRNOT00000073954,ENSRNOT00000074349 3 4 4 113 5 77902648 77902975 GATGTGGACAAGCTCAATGG 59 77902554 77902572 CAAGACATCGATGTGCTGC 60 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000059789 ENSRNOT00000082557 3 1 1 61 12 7115999 7116017 GGAGTTCTGGGCTGTAGTG 60 7115956 7115977 ATATTGATGCCGAACTTAGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051998 ENSRNOT00000086201 1 1 1 60 14 62686965 62686983 GAGAAGCCATGTCTTCACC 58 62686923 62686946 GTTAGGCTACTAATCATTCAGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051998 ENSRNOT00000086201 2 1 1 60 14 62687006 62687025 AGGTCTGGCTAGTGTATCAC 59 62686965 62686983 GGTGAAGACATGGCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC108588.1 ENSRNOG00000058408 ENSRNOT00000088163 1 1 1 80 10 12715339 12715357 GAGAGTGAAGACTCCCAGC 60 12715396 12715421 CTCTTTCTTTAGGTTAGGGAAGTC 59 Novel Rattus norvegicus 81 AC098622.1 ENSRNOG00000021123 ENSRNOT00000028681 2 1 1 60 1 222142456 222142475 GGAACTGCTCATTTCTCCAG 59 222142498 222142516 CACAGGCCTGATTAGACCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Fendrr ENSRNOG00000051160 ENSRNOT00000076265 3 1 1 85 19 52996951 52996969 CCCTAAAGGAAGAGGCCTG 60 52995547 52995565 GTGTGGGAAATGGAAGCAG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA44 ENSRNOG00000060124 ENSRNOT00000085913 1 1 1 60 2 47092403 47092421 AGAGACTTTGACAGCCCAG 59 47092361 47092381 CATATAGGAGAACTGAGTGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.7 ENSRNOG00000048836 ENSRNOT00000071016 2 1 1 64 1 121263992 121264010 TTCTACCACTCAGGCTCCT 60 121263946 121263964 AATCCATGGCTAGAGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061847 ENSRNOT00000080992 1 1 1 60 2 93817918 93817939 GTTGGAACGATACAGAGAAGAC 59 93817959 93817978 CATGAATTTGCGTGTCATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061847 ENSRNOT00000080992 2 1 1 60 2 93817918 93817939 GTTGGAACGATACAGAGAAGAC 59 93817958 93817978 CATGAATTTGCGTGTCATCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053268 ENSRNOT00000088924 1 1 1 60 2 18273630 18273648 GAGAAGATTAGCATGGCCC 58 18273588 18273606 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000051865 ENSRNOT00000085969 1 1 1 60 2 148386280 148386299 GCCTATAGTCCCAGCTACTC 59 148386239 148386257 AGAACTCCTGGACTCAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054334.1 ENSRNOG00000048734 ENSRNOT00000073448 1 1 1 60 3 148589613 148589635 GAAACAGGATATCTCTGTGACTC 59 148589653 148589673 GCTAGCCTGAGCTACATAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061848 ENSRNOT00000081635 1 1 1 60 14 112898442 112898461 CCAATGAGGTTTATCCGAGG 58 112898401 112898420 CAGAATAATGTAGTGGCGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001497.1 ENSRNOG00000018935 ENSRNOT00000025594 2 1 1 60 1 47587949 47587970 ACCATTTCTGAAATCAAGACCC 59 47587865 47587885 CTTCATCTTTCAGGGACTTCC 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000057246 ENSRNOT00000084048 3 1 1 61 1 257148174 257148192 CCAAGCAAGCTCTCAATGC 60 257148131 257148151 TAGGTTAGAGGCTCTATCTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061707.1 ENSRNOG00000052718 ENSRNOT00000079266 3 1 1 60 4 140503343 140503363 GTGGACCAAAGCTTATTACCT 58 140503303 140503322 AAGATGATGAAGTGGACCGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044977.1 ENSRNOG00000048535 ENSRNOT00000074647 1 1 1 179 20 29280285 29280305 GTAGGGCTGGCTCTTATGG 60 29280124 29280143 GAAGGTGCTGAACATCTCAG 59 Novel Rattus norvegicus 81 AABR07040494.1 ENSRNOG00000058719 ENSRNOT00000082854 1 1 1 80 X 102509862 102509905 AGCTGGATGTATAAGAAGGAC 57 102509787 102509805 TTCCATGATGACAAAGGCT 57 Novel Rattus norvegicus 81 U4 ENSRNOG00000058199 ENSRNOT00000089692 2 1 1 66 17 73715997 73716016 AATGAGGTTTATCCGAGGCA 59 73715950 73715971 CACAATGTTTACATGTATCGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062390.1 ENSRNOG00000054639 ENSRNOT00000073168 2 1 1 80 4 173974772 173974797 GTCAAGTAACATATGGGAGACC 58 173974841 173974860 CATCAGTCCAGGATCTTCTG 58 Novel Rattus norvegicus 81 SNORA38 ENSRNOG00000057377 ENSRNOT00000084436 2 1 1 60 12 7032844 7032862 GGTTTGGAAAGGACTGGGA 60 7032802 7032820 TCTGTGGAATGGTTGGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_14_0449.2 ENSRNOG00000051316 ENSRNOT00000076753 2 1 1 60 14 45025521 45025539 TCAAGAGAAGTGGTGGAGG 59 45025561 45025581 TAATGCTGTCTGGGTAATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043861.1 ENSRNOG00000050382 ENSRNOT00000072715 3 1 1 94 19 44600184 44601291 GATGATGGAAGACTTTAAGAAGGAC 60 44600114 44600133 GTGTTTCCTCTTTAAGGGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030378.1 ENSRNOG00000060404 ENSRNOT00000080001 2 1 1 111 10 83313349 83313368 CAATGTCCCAATCTCCCAC 58 83313441 83313462 CAACAGACAGGTTTAATCTCCA 58 Novel Rattus norvegicus 81 SCARNA20 ENSRNOG00000061305 ENSRNOT00000082966 3 1 1 78 17 61052825 61052844 TTCTTGTCCTTTGAGCTACG 58 61052766 61052784 AAATCTTCCTCACAGGCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054283 ENSRNOT00000088451 1 1 1 60 2 259794526 259794546 TGGTTTGGCTGATTTAGATGG 59 259794564 259794586 GTTTATAGAATGCTGAGGGAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051665 ENSRNOT00000079693 2 1 1 60 3 51875184 51875202 GACTGCTGTGTCACATGTG 59 51875142 51875166 GAATGTAGACATAACCTCTTTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0822.1 ENSRNOG00000051261 ENSRNOT00000077064 1 1 1 74 13 77264732 77264750 TTCTCTGCCTAGGAAGCTG 59 77485157 77485175 TCTGAGCAATGAATGCAGG 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_13_0822.1 ENSRNOG00000051261 ENSRNOT00000077064 3 1 1 75 13 77264732 77264750 TTCTCTGCCTAGGAAGCTG 59 77485157 77485176 CTCTGAGCAATGAATGCAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07059877.1 ENSRNOG00000039626 ENSRNOT00000060755 3 1 1 60 4 39727923 39727944 GATGAAACTCCTATGTTTGACC 57 39727884 39727903 TTGTATTGTGACTCCAGTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041998 ENSRNOT00000063751 2 1 1 60 10 3399557 3399579 CCTTGATTATGACCAATCACCTC 59 3399519 3399537 TATTAACCAGGCCCTACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044786 ENSRNOT00000070053 1 1 1 64 2 166385288 166385306 TATACGCCCTGATCATGCC 59 166385242 166385260 CAATTCAGATGCAGCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028668.1 ENSRNOG00000060417 ENSRNOT00000085909 1 1 1 60 17 79829478 79829496 CTGTTCGTTGAGCCAAGTC 59 79829436 79829454 TGCATCCTTTAACCAGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028668.1 ENSRNOG00000060417 ENSRNOT00000085909 2 1 1 60 17 79829485 79829503 GGTGATGCTGTTCGTTGAG 59 79829443 79829463 TTTAACCAGCAGAATTGAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059161.1 ENSRNOG00000051942 ENSRNOT00000082504 2 1 1 82 4 5848770 5904599 TGCCTGCTGATGTATTTGTG 59 5904644 5904662 TGAATGAATCCCAGTGGCT 59 Novel Rattus norvegicus 81 AC099360.1 ENSRNOG00000025214 ENSRNOT00000032728 1 1 1 60 4 7052981 7052999 GGGAACAATGTGAAGACCA 58 7052939 7052960 CTTCAAATACCCACATCTTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051718.1 ENSRNOG00000052047 ENSRNOT00000088887 2 1 1 60 3 20050332 20050354 CTCCTGATCTATTATGCATCCAC 59 20050294 20050312 CACTGCCACTAAACCTGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000057361 ENSRNOT00000085324 3 1 1 61 14 97920960 97920978 AGAGACTTTGACAGCCCAG 59 97921001 97921021 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA3 ENSRNOG00000052521 ENSRNOT00000086149 1 1 1 61 1 53236728 53236748 CCAGCCATGTAGACAAATGAG 59 53236687 53236705 TTATGTGGGACTGTTGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362999 ENSRNOG00000004239 ENSRNOT00000005614 1 1 1 60 6 59300462 59300481 ATGAAATCCTCAGTGACCCA 59 59300419 59300437 AAAGCCACCATGACTTCTG 58 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000046917 ENSRNOT00000074511 3 1 1 60 12 28997856 28997875 ATACCATACTGGACATGCCT 58 28997897 28997916 TCCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053871 ENSRNOT00000089811 1 1 1 60 1 261936143 261936161 CATTGAGGTACCACTGCTG 58 261936101 261936120 CGTAGTTATAGCCTGTCTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000057591 ENSRNOT00000082778 3 1 1 67 2 165813967 165813985 ATCAGACCTTGCTGCTGAG 60 165814016 165814034 ACTACATCACTGTGAGGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA7 ENSRNOG00000054760 ENSRNOT00000090961 2 1 1 60 1 47702740 47702759 CCTTACCAGCAGATGTAAGC 59 47702699 47702717 ACAGAGGATCGGTCTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563091 ENSRNOG00000052444 ENSRNOT00000084021 2 1 1 60 4 28306423 28306441 ATGAAGGGAAAGAAAGCGT 57 28306381 28306402 GCTATGTTGTAAGTGTCATACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052296.1 ENSRNOG00000055541 ENSRNOT00000090213 3 1 1 67 3 45498241 45498259 TACTGGGTTTGGAATGCCA 59 45498092 45498113 GTAATAAATCGTCATGGTGGGA 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_20_0026.4 ENSRNOG00000059066 ENSRNOT00000089400 2 1 1 82 20 2589713 2602375 GCTCCTTGAGGATATTTCTCC 58 2589651 2589669 AAATGACTGCAGTCTCCCA 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052712 ENSRNOT00000088262 1 1 1 67 1 27540920 27540938 AAGTATTGCTGGTGTGGCT 60 27540871 27540889 ACATAGCTTCCCTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000055517 ENSRNOT00000087941 2 1 1 60 1 56863002 56863025 GACTACAGAAAGTCTAGAACAGGA 60 56862965 56862984 AAGCATGGATCAATTCAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000055268 ENSRNOT00000078933 1 1 1 60 6 91633139 91633160 CCTGCTTTCTTTGGAATATGTG 58 91633100 91633121 CTTCAACTATGTGTATAGCACG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000055979 ENSRNOT00000080636 2 1 1 60 6 92997137 92997156 GCAGTATCGTAGCCAATGAG 59 92997096 92997115 AGAGCACCAATGAATTAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059185 ENSRNOT00000078501 2 1 1 62 6 67720601 67720620 TAACTTGTTGCATTTGCCTC 57 67720558 67720576 CACAGGAATCCTTTAGGCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr3 ENSRNOG00000009540 ENSRNOT00000076866,ENSRNOT00000012710 1 2 2 60 5 151395955 151395975 TCTATCCACTCTCCAAGAACC 59 151395915 151395934 CCAAACACCATGAAGAAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC118350.1 ENSRNOG00000036784 ENSRNOT00000055170 3 1 1 60 1 172719165 172719183 GGAGAAAGTGATGTGGCTG 59 172719123 172719141 CTGGATTCACTGCATCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC123185.1 ENSRNOG00000052414 ENSRNOT00000077638 3 1 1 79 15 108924511 108924531 TGATTTGCTTTCTACAGTCGC 59 108924574 108924592 GAAGTGAGTCCGACCATCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07005888.2 ENSRNOG00000060219 ENSRNOT00000077702 1 1 1 226 1 204320864 204320882 TCATTCCCTGTACAGCCTG 59 204321076 204321094 CTCTGAGCTAACCTGTCGG 60 Novel DesignNoJunction Rattus norvegicus 81 U4 ENSRNOG00000061439 ENSRNOT00000080843 1 1 1 60 1 260133586 260133606 CCAATGAGGTTTATCCAAGGC 59 260133628 260133646 GGTCACAAGACTAGAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056872 ENSRNOT00000081231 1 1 1 60 14 77966039 77966057 GTAGGTCAGTAGGTGGCAG 59 77965997 77966015 CACAGTTCAGAACACGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000054881 ENSRNOT00000084219 2 1 1 64 2 234693459 234693477 TGAGGTTTATCCGAGGTGC 60 234693413 234693433 AACAGCTGATCTTGTTGAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053951 ENSRNOT00000089926 3 1 1 65 10 111097588 111097606 GAGAAGGGATTAGCATGGC 58 111097541 111097560 TTAAATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000051936 ENSRNOT00000081868 1 1 1 60 2 171006103 171006124 GGAAGTAGGAGTTGGAATAGGA 59 171006064 171006082 CCTGGAGGTACTGTGATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0745.3 ENSRNOG00000051218 ENSRNOT00000076778 2 1 1 60 X 73622638 73622657 TATGCAAGATGCAAGCTCAG 59 73622680 73622698 ACCCAGGTCACTAAACCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0745.3 ENSRNOG00000051218 ENSRNOT00000076778 3 1 1 60 X 73622639 73622657 ATGCAAGATGCAAGCTCAG 59 73622681 73622699 AACCCAGGTCACTAAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000046771 ENSRNOT00000054229 3 1 1 60 3 41769675 41769694 CCCGATCTCTTCTGATCTCG 60 41769715 41769735 TCTCATCCAAGGACTAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD88 ENSRNOG00000057997 ENSRNOT00000091218 1 1 1 60 4 71663367 71663387 TGTCTAGTACTGGTTCCAGTC 59 71663408 71663427 CAGGTGTCAAAGGTTCTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044082 ENSRNOT00000069349 1 1 1 60 2 48907266 48907286 CGATCTTGGAAGCTAAGAAGG 59 48907306 48907326 AGAACTACAGATCTTCCACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA3 ENSRNOG00000053310 ENSRNOT00000077444 1 1 1 60 4 183450207 183450225 AGTCTTGATTCACTGGTGG 57 183450249 183450267 ATATGTTTCTGGTCTGGGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD91 ENSRNOG00000056913 ENSRNOT00000085864 2 1 1 61 10 61754621 61754642 GGAGCCAATGATGTCTTTATCC 59 61754664 61754682 TGTGCATCACTGAGATGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD91 ENSRNOG00000056913 ENSRNOT00000085864 3 1 1 61 10 61754622 61754643 GAGCCAATGATGTCTTTATCCA 59 61754665 61754683 GTGTGCATCACTGAGATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052443 ENSRNOT00000086181 1 1 1 60 1 252595061 252595079 GTGAAGATTAGCATGGCCC 59 252595103 252595121 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC239813.1 ENSRNOG00000053042 ENSRNOT00000077708 1 1 1 80 Y 210581 214541 GATTTCTTTGGATGATGCTGG 58 214582 214601 GGATCACTTTCTGACTCTGC 58 Novel Rattus norvegicus 81 AABR07015078.2 ENSRNOG00000059504 ENSRNOT00000080984 2 1 1 61 14 46650337 46650355 TGTTCACCTTGGAGACCTG 59 46650294 46650312 GAGAGGGTGTAAATCTCGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053837.1 ENSRNOG00000054840 ENSRNOT00000077213 1 1 1 60 3 129857263 129857281 CTCGCCTGCATTTACTCTG 59 129857305 129857326 TCTTATCCTCCGTGACCAC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07012342.1 ENSRNOG00000050472 ENSRNOT00000049525 2 1 1 60 2 194084429 194084447 AAACCGCATTGAGTTCCAC 59 194084387 194084406 AATGAAGGCCATCATTTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000059272 ENSRNOT00000083392 2 1 1 60 5 136057609 136057630 CAGATCGTATAAATCTTTCGCC 58 136057649 136057669 ACTCAGAATTGTTCCTCTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000055924 ENSRNOT00000084262 2 1 1 60 1 213460768 213460788 TAAACCTACCCTGTGTACACC 59 213460808 213460828 CCCATTCACAATACAGACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059637 ENSRNOT00000080375 2 1 1 61 1 267483403 267483423 GGAGTCTATGTCTACGCTCAG 60 267483443 267483464 TGGTAGGCTGTTAATCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sry3 ENSRNOG00000054335 ENSRNOT00000088534 3 1 1 60 Y 705881 705900 ATGCATTTATGGTGTGGTCC 59 705840 705858 ATGCTGGGATTCTGTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042607.1 ENSRNOG00000060419 ENSRNOT00000078228 1 1 1 94 19 248693 248725 GATTAAAGAGCTGCAGGAGAG 59 249244 249262 GATTTGGCCTGAAGTGTGG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000056196 ENSRNOT00000079299 1 1 1 60 14 48387621 48387642 ATACAGAGAAGATTAGCATGGC 58 48387662 48387681 GGAACACTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054755 ENSRNOT00000082765 1 1 1 60 10 50199440 50199460 ACGATACAGAGAAGACTAGCA 58 50199482 50199500 ACGCTTCACTAATTTGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565989 ENSRNOG00000013940 ENSRNOT00000047544 1 1 1 80 2 127916268 127916288 CGCTTTAGAGTATCACGTTGG 59 127916328 127941960 ACATTTGAACTGCTGACAGAG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000059273 ENSRNOT00000079541 3 1 1 71 1 189735807 189735825 ACAGAACGGAGAAGATCGG 59 189735859 189735878 TAATACTGGGAAGCACCCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061044 ENSRNOT00000077686 1 1 1 60 5 50252873 50252897 GAGAAGAAAGACTGTATCTATGCTC 59 50252911 50252933 CTCCCAATCATTCAGATGTTCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060969 ENSRNOT00000088467 3 1 1 60 1 90304180 90304198 GGAAGCTATGTACTGGGTC 57 90304138 90304157 AGTGCTGGAAAGTTCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001519.1 ENSRNOG00000055547 ENSRNOT00000086127,ENSRNOT00000077423,ENSRNOT00000089439 2 3 4 85 1 49681982 49844388 ACAGTACAGAACTGTGACCT 58 49681916 49681934 GAGGCATTTGTTTCGTGAC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058302 ENSRNOT00000090879 3 1 1 68 14 45942017 45942036 TAGAGGCTTTACAGGTGTGC 60 45942066 45942085 ATAGTCTTTCACCTCCCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056412 ENSRNOT00000088035 2 1 1 69 6 20219783 20219802 CCCTTGTCAACACAAATCCT 58 20219834 20219852 TTATCTTTGCACAGGTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060673 ENSRNOT00000081100 2 1 1 60 14 106140489 106140507 TCTGCCCTTAGAAGTGCTG 59 106140447 106140466 TCTGGCACCTACTGATTCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060673 ENSRNOT00000081100 3 1 1 60 14 106140452 106140471 CCCATGTGAATCAGTAGGTG 58 106140411 106140435 TAGAACACTGAGATTAGACATAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059301 ENSRNOT00000086989 3 1 1 60 6 137105065 137105083 TCTAGGGTTGAATCAGCCG 59 137105023 137105041 CTATGCCAAGAACCGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058354 ENSRNOT00000082373 3 1 1 62 6 47627165 47627186 ATGATTCAGAGAAGATCAGCAC 58 47627124 47627142 GAGCGCTTCACAAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060186 ENSRNOT00000077664 1 1 1 60 14 32748903 32748922 GAGGAGAGGCTATGTCAAGG 59 32748941 32748963 GGCTACTAATCATTCAGATGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049048.1 ENSRNOG00000054330 ENSRNOT00000085610 3 1 1 93 5 101640205 101640225 ACTTTACAGTTAAAGGCAGGG 58 101640278 101640299 GATTTACACAGAAGCTCCAGG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000060363 ENSRNOT00000078777 1 1 1 60 1 143496591 143496609 GTGCTCATGAAGTAGCACG 59 143496632 143496651 GGCCAGACTAATCTTCACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061060 ENSRNOT00000082515 2 1 1 60 3 120039706 120039725 CCCACATTGATTAGGCTGAC 59 120039665 120039684 AAATTGTGAGGGAGGAAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006860.1 ENSRNOG00000053424 ENSRNOT00000086885 3 1 1 60 1 260832285 260832303 TGGAGATTCCCTCGTAAGG 58 260832326 260832345 ACCAACTTACCACTCACTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD88 ENSRNOG00000054326 ENSRNOT00000081120 1 1 1 60 1 100224884 100224902 TGTATAGCACTGGGCTCTG 59 100224926 100224944 GATGTCAAAGGTCCTGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065363.1 ENSRNOG00000061478 ENSRNOT00000090405 3 1 1 92 6 124210165 124210183 TGCTAATTCTCCTGCTGCT 59 124210239 124210258 ATCTGCCAAGACAGCAGAG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000059980 ENSRNOT00000085577 3 1 1 60 1 258163155 258163175 GACACAGATAATTAGCATGGC 57 258163115 258163135 TGGAATCCTTCCTGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017604.1 ENSRNOG00000054270 ENSRNOT00000085162 2 1 1 79 15 29157491 29157509 TTCACTAGTGCTCCTGTGG 59 29157739 29157757 CAATGAGGGATTCTGGGCT 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000058537 ENSRNOT00000079906 3 1 1 61 12 16259372 16259390 GAGAAGATTAGCATGGCCC 58 16259414 16259433 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052482 ENSRNOT00000082829 2 1 1 62 12 30182229 30182247 GAGAGGCCATGTCTATGCT 59 30182270 30182291 TGTTAGGCTACTAATCATCCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061001 ENSRNOT00000082243 1 1 1 61 3 163059820 163059838 GAGAAGATTAGCATGGCCC 58 163059862 163059881 AAATATGGAACTCGTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055303 ENSRNOT00000084489 3 1 1 60 3 103099601 103099622 TTGTAGATGTGGTTGCTATGTC 59 103099641 103099661 AGACATACTCTCCTTTCTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017748.2 ENSRNOG00000053763 ENSRNOT00000090632 2 1 1 80 15 30621416 30621612 CAGATTTGCTGGGTGAAAGG 60 30621654 30621673 CAGAACAGAACTGGTTCCCT 60 Novel Rattus norvegicus 81 AC115322.2 ENSRNOG00000054405 ENSRNOT00000085983 3 1 1 138 3 175708731 175708987 ACGTATGCTGGGTAGAGTG 59 175709089 175709107 CCCTTTCTGCATTCTTCGG 59 Novel Rattus norvegicus 81 AC113901.2 ENSRNOG00000060222 ENSRNOT00000077768 1 1 1 60 2 78427451 78427470 TGATGTGAAATGGCAGTCAC 59 78427357 78427428 TCAACAACAGCACATCCCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07009106.2 ENSRNOG00000057159 ENSRNOT00000079449 2 1 1 81 2 87028514 87028533 TTCTGGAGCAAAGACCAGAG 60 87028574 87038879 GGATCATTGAGTGCTATTCCTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000058969 ENSRNOT00000081128 2 1 1 70 5 164201035 164201053 GCTCCAGTAGCACATATCC 58 164201087 164201105 GTTATCCTTGTGCAGAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120070.1 ENSRNOG00000054181 ENSRNOT00000085373 1 1 1 80 1 148251718 148267727 AACAGAAACAGGCAAACCAC 60 148267766 148267788 CACCAATGAGATCCATGATACTG 59 Novel Rattus norvegicus 81 AABR07004947.1 ENSRNOG00000059184 ENSRNOT00000088291 3 1 1 82 1 171485357 171486064 CTGTGGAAAGAGGATCATGAG 58 171486108 171486127 TTTCTCAACAGCAAAGAGGG 58 Novel Rattus norvegicus 81 AABR07045071.1 ENSRNOG00000061091 ENSRNOT00000083295 2 1 1 60 20 33493093 33520847 ATCAACCACAAGCTTGAGG 58 33493051 33493071 CCTGAGTCTCAGTCAGTTCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07051996.1 ENSRNOG00000033278 ENSRNOT00000041305 2 1 1 60 3 31803184 31803204 TCAGATGAGGCACCTAAAGAC 60 31803226 31803244 TGTTCCTTCACGGAATCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054798 ENSRNOT00000080958 3 1 1 60 1 75508716 75508736 TGTACCTGACTAATCTTGGTG 57 75508755 75508776 TGTATAGAGGAGATAGGGAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035641.1 ENSRNOG00000057141 ENSRNOT00000091323 2 1 1 103 12 20599582 20659186 CATTCATGCTCTCATTACTACCC 59 20599501 20599519 GCAGTGAAGGAGTCCTCTG 60 Novel Rattus norvegicus 81 AABR07049348.1 ENSRNOG00000008914 ENSRNOT00000011831 1 1 1 96 5 117973306 117973325 ACAGACAATTACAATGGGCT 58 117973382 117973404 GTGATTCATTAGGAACATGGC 57 Novel Rattus norvegicus 81 AC128394.1 ENSRNOG00000055972 ENSRNOT00000082011 1 1 1 88 1 12906978 12906996 CGGTCGAGATCAAGAAAGG 58 12907050 12907072 CTTGTTAAACCGTTCACCG 57 Novel Rattus norvegicus 81 AC098750.1 ENSRNOG00000053928 ENSRNOT00000085305 1 1 1 86 2 188762105 188762123 TTGTTCGCACCTGTTACCT 60 188762173 188762193 AGAAGAACAAGGATGGGCC 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000056986 ENSRNOT00000082922 2 1 1 60 1 136498029 136498047 GTTGTGAGTGTCCCTTTCC 58 136497987 136498005 AGTGTACAGCTTTGGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053287 ENSRNOT00000090788 2 1 1 60 1 114337543 114337561 AGAAGATTAGCATGGCACC 58 114337501 114337520 AATTATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA6 ENSRNOG00000052791 ENSRNOT00000077654 2 1 1 60 3 63024743 63024761 AACAGAACCCATGATGCAG 58 63024701 63024719 AGATCATACACGGTCACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042792.1 ENSRNOG00000060310 ENSRNOT00000083521 2 1 1 146 19 9112635 9112653 ATCATCTCTGCTGAGGGTG 59 9112763 9112784 CAGGGTGATGTTCCGAGAG 60 Novel DesignNoJunction Rattus norvegicus 81 Rn60_13_0853.1 ENSRNOG00000051292 ENSRNOT00000076046 1 1 1 80 13 80392525 80392939 GGAGATTACCGAGGAAGGC 60 80392463 80392481 CGAGATACACCACGAAGCA 60 Novel Rattus norvegicus 81 AABR07053866.1 ENSRNOG00000051005 ENSRNOT00000072407 1 1 1 88 3 131531515 131531533 CGGTCGAGATCAAGAAAGG 58 131531439 131531461 CTTGTTAAACCGTTCACCG 57 Novel Rattus norvegicus 81 U1 ENSRNOG00000060036 ENSRNOT00000091776 3 1 1 65 1 196649595 196649614 AGCTTACCAATTGGAGTCCA 59 196649549 196649567 GAAGGCACAAATGCCATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058913 ENSRNOT00000091008 1 1 1 60 1 144947067 144947085 GTGTCAGTAGGTGGCAGAG 60 144947109 144947127 TTCACAGGTCAGAGCACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000052215 ENSRNOT00000091709 1 1 1 61 6 87098939 87098957 AAGAGACTCCTTGGTGGTG 59 87098982 87099000 GAACTGCCATCTTCTCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055477 ENSRNOT00000091269 1 1 1 60 1 163463370 163463388 CGTAGCCATTGTGTTTCAG 57 163463410 163463430 TCAAGTTTCCTGAACTTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115371.2 ENSRNOG00000052228 ENSRNOT00000089954 1 1 1 60 15 33478462 33478481 ACGACTTATGGTATTGCGAG 58 33478499 33478522 CTCATAAAGAGTAACAGAACGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0635.1 ENSRNOG00000051188 ENSRNOT00000075897 2 1 1 60 10 64592957 64592975 CACTTGGCTACTGTCACTC 58 64592915 64592933 TGCCTCTACCTACACTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA54 ENSRNOG00000052577 ENSRNOT00000090108 3 1 1 60 1 216733174 216733193 CCAGTGCTACAGGATTTCCA 60 216733133 216733152 GAAACTGAAAGCCACTAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5f1 ENSRNOG00000016000 ENSRNOT00000077057 1 1 3 98 2 208420017 208420035 CTTCGCAGACAATGCTGTC 60 208419687 208419705 GTGACACTTACCCTGGACC 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000054005 ENSRNOT00000080492 3 1 1 62 1 2720333 2720353 AACGATACAGAGAAGACAGCA 59 2720377 2720395 GGAACACGTCACGATTTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029573.3 ENSRNOG00000060143 ENSRNOT00000079481 3 1 1 66 10 35058570 35058588 GTATGCTGTGTCACTCCCA 59 35058521 35058540 TTTCCTGCATTTCTTGGCA 58 Novel DesignNoJunction Rattus norvegicus 81 SNORD86 ENSRNOG00000051605 ENSRNOT00000086450 1 1 1 60 3 122806417 122806436 GATTACAGTGATGGCTGACC 59 122806458 122806477 ATCACTCCCATAGTAGAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA3 ENSRNOG00000060868 ENSRNOT00000089475 1 1 1 60 6 103567632 103567654 CTACATGAATATGGAGGTCTCTG 58 103567594 103567613 GGTGAACGATCAGACTTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC124874.1 ENSRNOG00000057039 ENSRNOT00000078963 1 1 1 60 13 82126921 82126941 ACACCCTTCATAATAGACCCA 58 82126881 82126901 CTTGCTTGGTTAAAGTCACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC124874.1 ENSRNOG00000057039 ENSRNOT00000078963 2 1 1 60 13 82126519 82126540 GTACAGAGACAGACAGATAGAC 57 82126480 82126498 GTGTGGGTTCATTTCTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000052544 ENSRNOT00000082610 1 1 1 67 14 5375516 5375534 GTTGAGTTCAGTTCAGGGC 59 5375467 5375488 CTTAGTCACTTTCAATGTCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015555.1 ENSRNOG00000045758 ENSRNOT00000072473 3 1 1 108 14 63295543 63295561 GACAGAGAAGGAGGGAAGG 59 63295453 63295472 GTAATTCACATGCACATGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000058179 ENSRNOT00000085773 2 1 1 60 5 74897190 74897208 CTGTAGTGTGCTATGCCGA 60 74897148 74897167 GGAGGTCACCATATTGATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059067.1 ENSRNOG00000055910 ENSRNOT00000083917 1 1 1 92 4 2972630 2972651 TTCTTCTGACTCACTTGGCA 59 2972706 2972724 AAGATGGTCCAGGGAACAC 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000060073 ENSRNOT00000078984 2 1 1 81 14 92640103 92640121 GATACCATGATCGAGGCGT 60 92640166 92640184 ACATTTGGAGAAGCCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000059327 ENSRNOT00000083913 1 1 1 60 1 116758191 116758212 CAACAGAAAGTCAAGAACAGGA 59 116758152 116758172 CTCAGCCTAATCCTATTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC129753.2 ENSRNOG00000055799 ENSRNOT00000090617 2 1 1 60 10 55617758 55617778 AGCTTCAGAAGTTCTGTAGTC 58 55617797 55617818 CCAATGGATTTCTAGTCCATCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061843 ENSRNOT00000084247 1 1 1 60 5 109672143 109672164 GATACAGAGAAGATTCGCATGG 59 109672104 109672122 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000053137 ENSRNOT00000077459 1 1 1 60 5 101613991 101614009 TCATCGCCTGCATATTCCT 59 101613949 101613967 TTTGTCTCCTCAGTCACGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000053137 ENSRNOT00000077459 3 1 1 60 5 101613975 101613998 ATATTCCTACGACTTCTCAGAGTC 59 101613938 101613956 TTTCCTGCAGGTTTGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068750.1 ENSRNOG00000056482 ENSRNOT00000091931 1 1 1 60 9 117484215 117484235 GGAAGAACACCAGAAATTGCA 60 117484175 117484199 TATACTTCTGTACCAGTTTCTGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056272 ENSRNOT00000078460 1 1 1 62 6 82137826 82137844 ATGCTCACTAAAGCAGCAG 58 82137869 82137888 GGGACAAAGATAACCTTGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017635.2 ENSRNOG00000061833 ENSRNOT00000082167 3 1 1 73 15 29443322 29443341 TTACTCCTAGGCCTTCACCT 60 29443131 29443149 CTTTGTTTGACCTGCTGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019663.1 ENSRNOG00000057509 ENSRNOT00000089541 1 1 1 60 13 759821 759842 ATCCATCATGTTCTAGTCACAC 58 759860 759881 CTAGCATCTCTACTTCTTCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC109023.1 ENSRNOG00000055888 ENSRNOT00000077254 2 1 1 83 4 88082675 88082698 CTAGCCAATATGTTTCTCTGCT 58 88082739 88082760 CATTTGGCAGGAAATCATATCC 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000059425 ENSRNOT00000081295 3 1 1 60 1 198235271 198235293 CATACAGAGAAGATTAGCATGGC 60 198235313 198235331 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054606 ENSRNOT00000090135 1 1 1 60 13 14773194 14773214 AAGTACATCAATAGGTGGCAG 58 14773236 14773254 CCAGTCAGAACACTAAGCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058074 ENSRNOT00000089453 3 1 1 60 6 61280789 61280807 GTCACATGTGCACCAAGAG 59 61280747 61280767 CAGAACACTGAGTGTAGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061001.2 ENSRNOG00000055869 ENSRNOT00000082926 2 1 1 60 4 102514759 102514779 AGTTACTGTCTGCATCTCTGG 60 102514801 102514819 ATACTCTCGCTTGTCCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052808 ENSRNOT00000085212 2 1 1 60 9 64894160 64894178 TGCACTAAACCTGGAAGGA 59 64894201 64894220 ATTCCGTGTCATCTGTAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115509.1 ENSRNOG00000049126 ENSRNOT00000071441 3 1 1 121 2 78633781 78633799 GAGTGAAGACTCCCAGCTC 60 78633882 78633905 CCAATCTATTTGGTCTGTAGGC 59 Novel Rattus norvegicus 81 AABR07058360.1 ENSRNOG00000044626 ENSRNOT00000069893 3 1 1 166 7 111756172 111756193 CCTTACTTCACTTCCATATGCT 58 111756314 111756338 TCCCTATAAGAATTAGCTTCTAGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000058896 ENSRNOT00000077643 2 1 1 60 6 30630936 30630954 GATGAAGAACGCAGCTAGC 59 30630976 30630996 GTCGATGATCAATGTGTCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053176 ENSRNOT00000083101 2 1 1 60 13 94767453 94767471 AGAACCTCCAAACAAGCCT 59 94767411 94767430 GGTAAATGACGAACCAGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057483 ENSRNOT00000079839 1 1 1 60 7 31713763 31713784 GAACTATCCAAAGATTAGCGTG 57 31713805 31713823 GACTGCTTCATGATTTGCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061068.2 ENSRNOG00000060654 ENSRNOT00000087659 3 1 1 82 4 103524358 103524708 TTTGGATTCCAGCTTCCAG 58 103524753 103524772 AGAAGCTTGATCTCCAAGTC 57 Novel Rattus norvegicus 81 AC123185.2 ENSRNOG00000055266 ENSRNOT00000090037 1 1 1 80 15 108869255 108869275 AAAGATACACCGATCCACAC 58 108869194 108869213 TGTCTGTTTCCTCTATGCTG 57 Novel Rattus norvegicus 81 SNORA48 ENSRNOG00000058881 ENSRNOT00000083445 3 1 1 60 9 66499226 66499247 GTGTTGTTCTTACATCAGTCAG 57 66499266 66499286 CAAGCTAGGATGAACAAAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000054998 ENSRNOT00000080569 1 1 1 60 5 159232881 159232901 TAATTTACACAGCCAGACACC 58 159232920 159232941 AGCATATCGGTCATCTTAAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070043.1 ENSRNOG00000052640 ENSRNOT00000080835 1 1 1 63 8 45701548 45701567 TAGTGCTATCTTCATGGCCG 60 45701502 45701522 TACTCTCACACCAGCATCG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORD70 ENSRNOG00000057685 ENSRNOT00000090276 1 1 1 60 20 43426120 43426140 GAAGTATTTCCTTTGGAACCG 57 43426162 43426180 TGTCTCAGTGATAGTGGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07022168.1 ENSRNOG00000059863 ENSRNOT00000082906 3 1 1 85 13 110678099 110678117 ACAGCATGTGGAAGGAGTC 60 110673892 110678051 TTCCTTCATGTTCATGGTGC 59 Novel DesignNoJunction Rattus norvegicus 81 SCARNA16 ENSRNOG00000059721 ENSRNOT00000090263 2 1 1 65 4 173331629 173331647 AACCAGAGTGATTCCCAGG 59 173331582 173331600 GTCTGCATCTGTCACTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000057213 ENSRNOT00000081782 1 1 1 60 5 73513633 73513653 GGGTTTCGATTTATGGCAGAC 60 73513593 73513611 CAAGGGTTCTAGCAAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059847 ENSRNOT00000080474 1 1 1 60 4 183569644 183569663 CAGAGAAGATTAGCGCATGG 59 183569603 183569623 ATGGTACACTTCAGAATCTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC133265.1 ENSRNOG00000059203 ENSRNOT00000084514 2 1 1 99 8 46694494 46694554 GCGTCTCCAGTCTTTATTCTC 59 46694415 46694434 TGGTGATTTCCCATCTTTGG 58 Novel Rattus norvegicus 81 Telomerase-vert ENSRNOG00000054124 ENSRNOT00000090594 2 1 1 84 4 150151443 150151463 TTGTTATAGCTGTGGGTTCTG 58 150151379 150151397 ATGTCTGAACTTTCCAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Hist1h2bh ENSRNOG00000058187 ENSRNOT00000086538 2 1 1 61 17 44520026 44520044 TCGTGAACGACATCTTCGA 59 44519983 44520001 CTTGTTGTAATGCGCCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000059394 ENSRNOT00000089300 3 1 1 60 14 46687019 46687037 ATGAAGAACGCAGCTAGCT 60 46687060 46687079 TGTCGATGATCAATGTGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053982 ENSRNOT00000090805 3 1 1 60 10 65358153 65358172 GAAGATAGCGTGACTATGGC 58 65358192 65358213 TCCAATGTTAGGATCAATGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059648 ENSRNOT00000091425 2 1 1 61 6 66031644 66031662 GGCTGTTCTGTCACATGTG 59 66031685 66031705 TGAGGGTAGACATAGTGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051524 ENSRNOT00000081608 3 1 1 60 5 165257914 165257935 TGATCTCAAAGGAGTTCAAAGG 58 165257875 165257894 CAGGGATCAGCATATTGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041721 ENSRNOT00000063474 2 1 1 60 15 87221769 87221787 TCAGAAGCTAAGCAGGGTC 59 87221808 87221829 AATATTAAAGGGAGGTCTCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060994.1 ENSRNOG00000060746 ENSRNOT00000079277 1 1 1 80 4 102351072 102351478 TGGATTCCTGCTTCCAGAG 59 102351522 102351540 AGAGGTTTGACCTCCAAGG 59 Novel Rattus norvegicus 81 SNORA15 ENSRNOG00000059610 ENSRNOT00000084040 3 1 1 60 10 46960677 46960698 AGTAATTTACACAGCCAGACAC 59 46960717 46960737 GTGATCAGCCATCTTAAAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057170 ENSRNOT00000082641 2 1 1 60 4 116823530 116823551 TATGTCACATGTGCATTATGGG 59 116823491 116823511 CACATTGAGCATAGACAAAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018062.1 ENSRNOG00000036382 ENSRNOT00000054499 1 1 1 61 15 38054893 38054911 ATCTCTGGGCGAGTATCTC 58 38054936 38054954 AAGGCTCAGAGGTCTAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059234 ENSRNOT00000082362 1 1 1 60 10 43392298 43392316 CAGCCTGAGTAGGTTTCAC 58 43392339 43392358 TGTATCCTGTGACCCAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053164 ENSRNOT00000077778 1 1 1 63 3 11056809 11056828 TGCTTAGGCATCATGTACTG 58 11056765 11056783 GTAGTCCTTGCATAGGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000051537 ENSRNOT00000077860 2 1 1 60 1 245891064 245891084 TGACTGTTCCTTAGCATTTCC 58 245891104 245891124 TTTATTGTAAGGCCCAAGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120310.3 ENSRNOG00000055942 ENSRNOT00000088542 1 1 1 60 17 14687181 14687200 CTGCCAAGACAAAGGTTGAG 60 14687140 14687158 TTTGTGACGGTAGCAAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120310.3 ENSRNOG00000055942 ENSRNOT00000088542 2 1 1 60 17 14686707 14686726 TCTTCGACACAGAGAAGGAG 59 14686666 14686685 GCTTTCTGATCAGCCTTTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031485.1 ENSRNOG00000061292 ENSRNOT00000092199 2 1 1 60 18 15316546 15316565 AAACACATTTCTGCCTTGCT 59 15316588 15316606 AGAGTGGAAGCAGATGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060819 ENSRNOT00000079179 1 1 1 60 13 2964765 2964788 GAGTACGATCTTCTAAGAACAGAG 58 2964728 2964749 TGTGCCTACTCATATTCTTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060474 ENSRNOT00000091544 3 1 1 61 10 72243987 72244009 CGATACAGAGAAGATTAGCATGG 59 72243948 72243966 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044905 ENSRNOT00000070172 2 1 1 60 3 110116756 110116774 TGAATGTGCCCAATCTTGC 59 110116797 110116816 CAGATATTAACAAGGCCCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002564.1 ENSRNOG00000022227 ENSRNOT00000029823 1 1 1 60 1 77111790 77111810 CCTTCTGCATCCTTAACTGAG 59 77111831 77111850 AGTCCAACTTGACTGATGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052252 ENSRNOT00000084314 1 1 1 60 13 80079630 80079648 AGAGGCTACGTCTATGCTC 58 80079670 80079690 GTTGGGCTGCTAATCATTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058332 ENSRNOT00000084623 1 1 1 60 6 29971614 29971632 ATACTTGATTCGGCAGCAC 58 29971572 29971591 GGCCATGCTAATCTTCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054523 ENSRNOT00000079075 1 1 1 60 4 106293120 106293142 GACTTATAGAGACTATGCAGGTG 58 106293162 106293180 TTCTGCCACCTACAGACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056229 ENSRNOT00000091459 1 1 1 60 20 2611285 2611305 CTAGAACTTCCAAACAGGCTC 59 2611323 2611345 AGACTTCACCTCATAGTGTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056229 ENSRNOT00000091459 3 1 1 60 20 2611115 2611136 CTGTCTACACATTGATCACCAG 59 2611152 2611175 CATCCTTAGAGCTAGTTAGATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015002.1 ENSRNOG00000056869 ENSRNOT00000080087 2 1 1 88 14 44556989 44557008 CGGTCGAGATCAAGAAAGGA 60 44557060 44557083 CTTGTTAAACCGTTCACCGG 60 Novel Rattus norvegicus 81 U6atac ENSRNOG00000055021 ENSRNOT00000089427 1 1 1 66 3 6083981 6083999 TGACAAGGATGGAAGAGGC 59 6083933 6083951 AAAGTAGGTGGCAATGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD47 ENSRNOG00000057278 ENSRNOT00000078298 3 1 1 60 13 78855392 78855412 AGTGATGTGATGATTCTGCCA 60 78855431 78855452 AAATGGAACGGTTGTAAAGGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096239.4 ENSRNOG00000061301 ENSRNOT00000087532 3 1 1 60 13 52265993 52266011 ACGTCTTGCAGAAATTGCC 60 52265951 52265970 CAGTAAGTGCTTGTCAAACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA69 ENSRNOG00000056426 ENSRNOT00000091170 1 1 1 60 20 45302005 45302024 TGAGCAGGTAGCAATTACAG 58 45301964 45301984 TTTCAGCAGGATTAATGGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069336.1 ENSRNOG00000054772 ENSRNOT00000083752 2 1 1 87 8 17694319 17694338 ATTCAGGTCAGACAACACTG 58 17690999 17694269 TTCCATGGAACGAAAGGTG 58 Novel Rattus norvegicus 81 AABR07036964.1 ENSRNOG00000048500 ENSRNOT00000072719 1 1 1 60 X 8059528 8059546 TTTGCTCTTCTTTGCCTGC 59 8059486 8059505 GGAAGTCCAAGGATCTAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07045321.1 ENSRNOG00000046812 ENSRNOT00000073740 2 1 1 65 20 42964160 42964178 TTTGTTAACAGGCTGTCGT 58 42964112 42964130 GATACCAGGCAAATAGGCA 57 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000053519 ENSRNOT00000078287 3 1 1 60 13 9637995 9638015 GGAACTTCCAAATAAGCACCA 59 9637955 9637974 GAGTCATACACCATGAACCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055704 ENSRNOT00000085093 2 1 1 60 5 16731970 16731990 CTGCTGTGTCACATATTCCTC 59 16731930 16731949 CACAGCATGGACATAGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053426 ENSRNOT00000082155 3 1 1 63 19 17357808 17357827 GAGCATGCCTATGTCTACAC 58 17357851 17357871 GGCTACCAATCAATCTTTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061078 ENSRNOT00000077825 3 1 1 75 13 109990799 109990817 ATGTGTTTCACTCCAGACG 58 109990742 109990760 TTAGGAGAGCACAGTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045106 ENSRNOT00000070373 1 1 1 60 19 35035189 35035210 AATCTAGTCTGATCTCAGATGC 57 35035231 35035249 CATATCCCATCCAAGCACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060452 ENSRNOT00000085791 3 1 1 63 15 55520342 55520360 AAAGTCAAGACCACACGGA 59 55520297 55520315 ATAGCAAAGACCCTTTGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061852 ENSRNOT00000087946 3 1 1 60 3 109913370 109913392 GATACAGAGAAGATTAGCATGGC 59 109913411 109913430 GAACGCTTCATGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000057990 ENSRNOT00000090954 3 1 1 65 15 110160725 110160744 AAGAGAAGGTTAGCACTCCC 59 110160772 110160790 GTATGCGTGTTGTTAGGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064253.1 ENSRNOG00000060718 ENSRNOT00000090441 3 1 1 80 6 71446983 71447006 AGATTTCACCTCACATGCGA 60 71446922 71446942 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 U3 ENSRNOG00000061360 ENSRNOT00000084803 1 1 1 62 20 45357217 45357239 CTAGAGAAGTTTCTCTGACTGTG 58 45357261 45357279 GAGAACGCTACGTCTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029741.1 ENSRNOG00000055994 ENSRNOT00000088207 3 1 1 61 10 48890808 48890828 GACAAACCCGATATGGTTGAG 59 48890848 48890869 GTTTCTGTCTTCTTCAACTTCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053326 ENSRNOT00000080469 3 1 1 64 10 65514771 65514789 GTGCTCCTTATAGTGGCAC 58 65514725 65514743 TGTGTCCTCCTTAAGCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052683 ENSRNOT00000089956 3 1 1 61 15 33968001 33968020 AGAGAAGATTAGCATGGCCC 60 33968044 33968062 AATATGGAGCGCTTCACGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054120 ENSRNOT00000082194 2 1 1 60 18 17811417 17811438 CTCTAAAGAAGCTACTGATGGG 58 17811378 17811399 GTTTGAGTGAGGAGAAAGAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000058349 ENSRNOT00000084877 1 1 1 60 18 47569959 47569978 TACCTCGATTGACTGTCCAC 59 47569998 47570019 AAGGGAGAAAGTGTAGAATTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD23 ENSRNOG00000059690 ENSRNOT00000080874 2 1 1 63 1 24306081 24306099 CATTCTGAGGGTAGGGCTG 60 24306126 24306144 TCAAGCAATGGTCCAACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Cbr1 ENSRNOG00000049693 ENSRNOT00000041838 1 1 1 88 11 33845740 33846243 TCGCCTTCAAAGTTGTTGAC 59 33846294 33846312 GCAGACATCTTGGGTACCA 59 Novel Rattus norvegicus 81 LOC102556347 ENSRNOG00000049911 ENSRNOT00000085961 2 1 1 89 11 33813364 33846243 TCGCCTTCAAAGTTGTTGAC 59 33846295 33846313 TGCAGACATCTTGGGTACC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000056053 ENSRNOT00000091700 1 1 1 60 18 84431217 84431236 CCCTTGTGCTTTAGTAGGTG 58 84431259 84431277 AGGTCAGAACATTGAGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA1 ENSRNOG00000060546 ENSRNOT00000088896 3 1 1 60 X 123394027 123394046 GAGATACAGGTCATGCTTCC 58 123394069 123394087 GCAGGTCTCATTGTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060360 ENSRNOT00000084923 1 1 1 60 18 31444770 31444791 ATGATACAGAGATTAGCAAGGC 58 31444810 31444830 CAGAACGATTCAGGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051439.1 ENSRNOG00000049599 ENSRNOT00000072773 1 1 1 60 3 11348214 11348235 TGTTTAGACTACCTGTTCAGGA 59 11348256 11348274 CAGCCTAACCAATGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025051.3 ENSRNOG00000054322 ENSRNOT00000092000 1 1 1 73 16 26583540 26583561 ATGCATCCATAGTGGTGGG 60 26583595 26583616 TGTGCAATTATAGTCACAGGAC 59 Novel DesignNoJunction Rattus norvegicus 81 Y_RNA ENSRNOG00000058165 ENSRNOT00000088040 3 1 1 61 6 20467587 20467606 CACAGTCAGTTACAGATGGA 57 20467628 20467648 CAAATGGAGTAGTGAGAAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC103024.1 ENSRNOG00000031313 ENSRNOT00000042660 2 1 1 60 10 34355981 34356002 GAATAAGGAATGTTCCGTACTG 57 34356020 34356041 TCATTCTCATTACGCTTTCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoZ30 ENSRNOG00000053353 ENSRNOT00000083217 1 1 1 60 10 70512030 70512051 TGCAATGATGAGTGAAGTACAG 59 70512072 70512090 GTCAGAGCCATAGCAAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029504.1 ENSRNOG00000061927 ENSRNOT00000090496 3 1 1 61 10 31195752 31195774 GAGTAAACAATGACTTGTCCCAG 60 31195795 31195813 GAGGAGAAGGTCACACCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060577.1 ENSRNOG00000015328 ENSRNOT00000020546 2 1 1 60 4 81302200 81302220 TCTTCCTCAAAGAGTTACAGC 58 81302239 81302260 CCCTTCTCGTAGTTACTTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061296 ENSRNOT00000079804 1 1 1 60 18 39796112 39796134 CTTGGTGACAGAGAATAGAAAGG 59 39796148 39796172 CAGGTATACATAGGTTAGAACATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056700 ENSRNOT00000085942 2 1 1 60 15 1722757 1722775 GAGAAGATTAGCATGGCCC 58 1722798 1722817 AATATGGAACGCTTCACGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053921 ENSRNOT00000084007 3 1 1 61 7 37021875 37021894 CGACTGCTGTGTCATATGTG 59 37021917 37021936 GAGCATAGACATAGCCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057576 ENSRNOT00000078293 2 1 1 60 15 89135114 89135134 GTGCTATGTCTACTCTCAGTG 58 89135152 89135174 CTGTTAGGGTGCTAATCATTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058064 ENSRNOT00000083883 1 1 1 60 6 88546654 88546673 TTTGTCCCTAGAGGTATTGC 57 88546613 88546631 CTACTGAGGTGACATGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061503 ENSRNOT00000088341 1 1 1 60 5 70530758 70530777 AGAACATCCAAAGTTTGCAC 57 70530717 70530738 TTCATAGAGGAATAGGCTTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066792.1 ENSRNOG00000054698 ENSRNOT00000091215 3 1 1 80 9 16348879 16349091 GCTGGAAGACACAGAAGAG 58 16348817 16348835 TAATAGCGCTCTTCCTCCT 58 Novel Rattus norvegicus 81 SNORA2 ENSRNOG00000057109 ENSRNOT00000087653 3 1 1 61 15 79318840 79318860 TGAAGACCAGCAATTGTACAG 59 79318799 79318818 AAACCACAGTTCTTTAGGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061838 ENSRNOT00000085717 1 1 1 67 15 14527532 14527550 CATATGGCTGCTGTGTCAC 59 14527483 14527506 CTTAGATGTAACCTTTCTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000049202 ENSRNOT00000073244 2 1 1 60 7 115470680 115470698 CTACAGCGATACCACACTG 58 115470638 115470657 AGCTCTGTTTAGCTTGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC125982.1 ENSRNOG00000045580 ENSRNOT00000073852 3 1 1 109 7 130408084 130408102 CAAGCCAGATGCGATTCTC 59 130408177 130408195 TTTGCAGAGACTGATAGGC 57 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000055415 ENSRNOT00000085192 1 1 1 60 20 10593498 10593521 GACTGAAGTTAGAACGATACAGAG 59 10593461 10593479 AATTTGCATGCCATCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054443 ENSRNOT00000090503 2 1 1 60 20 36760112 36760131 GCATTGTAGGTGTGACAGAG 59 36760153 36760172 TCACAGGTCAGAAGACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD111 ENSRNOG00000060911 ENSRNOT00000081942 1 1 1 60 19 43399787 43399808 TGTCTCTTCTCTGACATTCTCC 59 43399829 43399847 CAGCCTCATCAGATCAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD111 ENSRNOG00000060911 ENSRNOT00000081942 3 1 1 61 19 43399781 43399801 AATTCGTGTCTCTTCTCTGAC 58 43399824 43399842 TCATCAGATCAGCAAGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055086 ENSRNOT00000088129 1 1 1 60 5 18803928 18803947 AACTAGGTGGCAGATAGAGG 58 18803887 18803905 ATTCAGTTGTTCGCTGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061533.1 ENSRNOG00000048087 ENSRNOT00000075654 3 1 1 64 4 132360805 132360826 TGTATGTCTGTATGTGCATGTG 59 132360851 132360869 GCTGTACATGCTCATGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052853 ENSRNOT00000081391 2 1 1 60 19 61757573 61757593 GCATTATTAGGTGGTAGAGGG 58 61757613 61757633 TTCACAGGTTAGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034695 ENSRNOT00000052818 2 1 1 60 19 38074280 38074299 TCTCGTAAGTTAAGCAGGGT 59 38074239 38074257 TATTCCTAGGTGGTCTCCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034695 ENSRNOT00000052818 3 1 1 60 19 38074277 38074296 CGTAAGTTAAGCAGGGTTGG 59 38074236 38074257 CAATATTCCTAGGTGGTCTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA81 ENSRNOG00000060539 ENSRNOT00000078004 2 1 1 60 11 81376560 81376579 CTGCACTGGATTCCAAAGAC 59 81376519 81376537 ATGACAAAGGACACTGGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000055515 ENSRNOT00000078194 2 1 1 60 7 712946 712964 GATGAAGAACGCAGCTAGC 59 712904 712922 GTCCATGATCAACGTGTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055052 ENSRNOT00000083053 3 1 1 60 9 115765966 115765985 GGTAAATAGGAAGCCGTGAG 58 115766005 115766026 CTCTATAATCTCCAGAGCTCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060850 ENSRNOT00000084740 2 1 1 61 11 2227654 2227672 CCCTATAGGTGTTGTGGGT 58 2227611 2227629 CTCCTTCTGCCACCTATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056488 ENSRNOT00000084914 3 1 1 60 19 49521682 49521703 TTTACCCATTGTTCTCAGTGTG 59 49521643 49521663 ATAGATGAGTTTGCCTTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059498 ENSRNOT00000081068 2 1 1 61 7 2667254 2667275 AATACAGAGAAGATGAGCATGG 58 2667295 2667315 GGAACGTGTCATGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000053952 ENSRNOT00000087915 2 1 1 60 19 56268675 56268695 TTGATACCTTAGTATCGCTGC 58 56268717 56268735 TGAAACCAAGCGAGTTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059562 ENSRNOT00000078558 3 1 1 62 7 8733936 8733954 AGTGTTGCAGTTGTGACTG 59 8733976 8733998 GTAGAAATAGCCTTTCTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000031202 ENSRNOT00000078058 2 1 1 80 1 169499697 169500325 TACTGGGAGACTCAAATACAGAG 59 169499639 169499658 CTTGGAGTCCAGAAGCTCTC 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000052195 ENSRNOT00000085290 1 1 1 60 5 22316547 22316568 GAAGCAATACAGGGAAGATCAG 59 22316588 22316607 GCTTCATGAATTTCATGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059462 ENSRNOT00000082232 3 1 1 60 19 9121359 9121378 TGTGAGTCAGTAGGTGACAG 59 9121399 9121419 ATAGGTCATAACACTGAGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA50 ENSRNOG00000051773 ENSRNOT00000081852 2 1 1 60 19 9716525 9716547 GATGTCTTACTTGTAGCTCAAGG 59 9716567 9716585 GAAGAGCCCAGTTCTTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058986 ENSRNOT00000089623 1 1 1 60 18 64463849 64463868 CGCGATTATTGCTAATTGGG 58 64463808 64463829 GAGCAGGATGTTCTCTTAACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000053366 ENSRNOT00000083050 3 1 1 163 1 84940249 84950058 TGAGCCCAGATTTGGAGTC 59 84940104 84940127 TCCTCTGAATGTACTATAGCTGTG 60 Novel Rattus norvegicus 81 U1 ENSRNOG00000053417 ENSRNOT00000080256 2 1 1 97 18 80170905 80170923 ATTCCGTGATCCAGAAGGT 58 80170826 80170845 CGATGTGTTCGGTATTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065656.5 ENSRNOG00000053719 ENSRNOT00000086423 1 1 1 105 6 139013261 139102343 ATTTCCAAGCTGTGTCCTG 58 139013174 139013192 TGAGAACCCAGAGACAGTG 59 Novel Rattus norvegicus 81 SNORA50 ENSRNOG00000051832 ENSRNOT00000088879 3 1 1 60 19 9718646 9718668 GATGTCTTACTTGTAGCTCAAGG 59 9718687 9718706 GAAGAGCCCAGTTCTTTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000051638 ENSRNOT00000086406 1 1 1 60 7 38426757 38426776 GAGTTGGAATAGGAGCTTGC 59 38426716 38426734 GGAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056867 ENSRNOT00000088354 1 1 1 60 3 11384152 11384172 CATGAGGTTCCCAAATGTGAG 59 11384112 11384130 ATATAGGCTTCCACTGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057255 ENSRNOT00000083040 3 1 1 60 18 7641050 7641069 TAGCGTGATCTGAGTGTGAC 60 7641009 7641030 GATTACATGAATCAACTCTGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051990 ENSRNOT00000084772 3 1 1 64 4 150515713 150515732 CAATGAGGTTTATCCGAGGC 59 150515668 150515686 CCATAGACTGTGGCATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042326.4 ENSRNOG00000060540 ENSRNOT00000087074 1 1 1 84 X 152886089 152886965 ATCAGCAGGATTAAGCCCA 59 152887277 152887296 CTGCACAAGATCTAGATGGG 58 Novel Rattus norvegicus 81 SNORA4 ENSRNOG00000052780 ENSRNOT00000088231 2 1 1 60 20 41767466 41767485 AACCTTAACCAATTCAGGCT 57 41767507 41767526 ATAGTCCACTGTGGAGTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058838 ENSRNOT00000090189 3 1 1 60 11 88403713 88403733 AGGCTATGTCTACATTCAAGC 58 88403752 88403773 TGTTAGGCTACTAAGCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Cetn2 ENSRNOG00000059593 ENSRNOT00000078929 3 1 1 80 X 152928834 152928854 TCAAGAATCTTAAGCGTGTGG 59 152928415 152928795 CAGCTTCATCAATCATTTCCTG 58 Novel Rattus norvegicus 81 AABR07068587.1 ENSRNOG00000057499 ENSRNOT00000084272 1 1 1 84 9 110056181 110056204 GAATAGCTTTGGCTACTCCTC 58 110056117 110056135 CTCCAGCAAAGCCAAATCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07057617.1 ENSRNOG00000057824 ENSRNOT00000039430 1 1 1 60 7 80457487 80457505 ACTGGTAACTTACGTGCCT 59 80457445 80457463 TCTCATCCACATTGACCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054030 ENSRNOT00000091872 2 1 1 60 11 85129456 85129474 CCACCTACAGGTAAAGCAG 58 85129414 85129433 CTTCTATGCCACCTACTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042859.1 ENSRNOG00000057392 ENSRNOT00000071592 3 1 1 62 19 12402888 12402906 AAGAAGTTAGACCGCAGGG 59 12402842 12402863 TTCTTTGTTTAGCTCTGAACCC 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000060992 ENSRNOT00000089289 1 1 1 60 11 71434460 71434478 GAGAAGATTAGCATGGCCC 58 71434502 71434520 AATAGGGAACGCTTCACGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065031.1 ENSRNOG00000047682 ENSRNOT00000073216 3 1 1 85 6 105037150 105037168 GGAATCCTGTTCTTGTGGG 58 105037081 105037101 AATCACTATGGCTGCAGGT 59 Novel Rattus norvegicus 81 U2 ENSRNOG00000061081 ENSRNOT00000086788 1 1 1 60 4 91233162 91233182 ACTAGGAGTTGGAATAGGAGC 59 91233122 91233140 TTCTGCAATACCAGGTCGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059423 ENSRNOT00000082214 3 1 1 60 7 110500095 110500118 CTATGTCACTTTCTCAACCATAGG 59 110500058 110500078 ATACTGAGCATTCACATTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA8 ENSRNOG00000055237 ENSRNOT00000091857 3 1 1 65 7 114579375 114579393 AGCAGTTCTTTCCTGTTGG 58 114579422 114579440 CCAACGATGCCAGATAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047799.1 ENSRNOG00000058066 ENSRNOT00000091281 2 1 1 62 5 48410507 48410525 GATGTCCAAGGTCAAGGTG 58 48410551 48410569 GGAAAGACAGCAAGACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059109 ENSRNOT00000085274 2 1 1 67 6 75606890 75606908 CTTATCCATTGCACTCCGG 58 75606841 75606859 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059046.1 ENSRNOG00000041521 ENSRNOT00000063274 3 1 1 60 4 2561383 2561401 TTCCTTCATAGCTGGGCAG 60 2561341 2561359 CCTCTTCCTCCCAATTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027128.1 ENSRNOG00000061064 ENSRNOT00000081454 3 1 2 80 17 14947092 14947112 GCAAAGAATGTGGAAGAGACC 60 14946564 14947024 GTGACTAAATTCCTTCTTCCTCTC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000051910 ENSRNOT00000088797 1 1 1 60 9 49661578 49661598 TCACATATGAGTCAGAGGTGG 59 49661538 49661562 CAGAACACTTAGTATAGACATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058633.1 ENSRNOG00000046123 ENSRNOT00000075490 3 1 1 75 7 128762937 128762955 CTACGAAGCACACTGAGTG 58 128762880 128762898 CAGTGACACTTGGAGTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000061928 ENSRNOT00000085727 2 1 1 80 8 76807873 76807892 AAGGTCTTGTGAAGGAAGTC 58 76807935 76813830 CATCCTGCATGGTACTGAG 58 Novel Rattus norvegicus 81 AC134651.1 ENSRNOG00000028529 ENSRNOT00000037907 3 1 1 61 2 205504436 205504454 ACACTACACAGGACCAGAC 59 205504480 205504498 CTGGCTGCTTCTAATGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063248.1 ENSRNOG00000053778 ENSRNOT00000080972 2 1 1 70 6 24200594 24200615 ACATACACTCACACTCATACAC 58 24200545 24200565 ACGAGTGTGAGTATAGGTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051649 ENSRNOT00000083406 2 1 1 60 11 29660061 29660082 TATACAAGTAGCTGTGTTCCCA 59 29660102 29660121 CTACAATGGACCTTGAGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064983.1 ENSRNOG00000004582 ENSRNOT00000006043 1 1 1 60 6 103640002 103640021 CCTGCTGATAACTACCACCT 59 103640044 103640062 GCAAAGAGCTCACAACCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000053251 ENSRNOT00000091517 2 1 1 92 4 175972566 175972584 ATGAGGTTTATCCGAGGCA 59 175972492 175972510 TACCACTGAGCTAGATCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059060 ENSRNOT00000079289 1 1 1 60 11 80898274 80898292 GGGACAAAGAGGAGTGAGG 59 80898313 80898334 AATCCAGATGTCTACAGGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003241.3 ENSRNOG00000055194 ENSRNOT00000080896 3 1 1 73 1 99888381 99888399 CTCCTTCTGACCAGTCTGC 60 99888436 99889262 CACTGATGCCAATGCTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000076396,ENSRNOT00000085052,ENSRNOT00000088581 2 3 6 60 10 74882537 74882556 TGCTGCCTGTACTTCATCTC 60 74882690 74882710 TGAATTCAACATCCAATGGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07013654.1 ENSRNOG00000061151 ENSRNOT00000072763 1 1 1 77 2 248579797 248579816 TCCCTGAAAGAATTCCAGGA 58 248579856 248579876 CCTGTGTTCTTTCTTGATTGC 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000058220 ENSRNOT00000091546 2 1 1 60 4 21904769 21904793 CAGTAAAGAGATTAGGATAGTCCCA 59 21904809 21904829 TGGAATGCTTCATGAGTTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063287.1 ENSRNOG00000047968 ENSRNOT00000075505 1 1 1 60 6 27107005 27107026 TTGAGTAGAAGACACCACATCC 60 27106966 27106984 GAGACCACCTAAACCAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060588.1 ENSRNOG00000027186 ENSRNOT00000035078 3 1 1 69 4 82432776 82432794 CAACAACCAGAGCAGACTG 59 82432725 82432744 TAAGAGTGAGGCACTCAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065643.1 ENSRNOG00000060451 ENSRNOT00000083031 3 1 2 96 6 138535944 138535962 CTCCAAGAGCCAAGTTCTC 58 138535715 138535887 GAAGAGTCCATATCTCACTGTG 58 Novel Rattus norvegicus 81 AABR07058301.1 ENSRNOG00000031680 ENSRNOT00000051728 2 1 1 60 7 109411580 109411602 GTGAAGAAACCTCATCGTTACAG 60 109411619 109411640 GATAGCATCTGATTTCACGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_1359.1 ENSRNOG00000051039 ENSRNOT00000076147,ENSRNOT00000076482,ENSRNOT00000076561 1 3 4 151 1 134884919 134885451 GGTGTGCCATTCTGAAGAC 59 134873735 134878985 CAAGCTGGGTGTAAATGCT 59 Novel Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000059018 ENSRNOT00000087304 1 1 1 60 7 18486 18504 GATGAAGAACGCAGCTAGC 59 18525 18546 GTCCATTATCAATGTGTCCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067042.3 ENSRNOG00000052878 ENSRNOT00000077690 1 1 1 83 9 27556404 27556422 ATCAAAGCACTGGTTGGTG 59 27556469 27556764 TCCAACATCTCTTGGCCTC 59 Novel Rattus norvegicus 81 AABR07005581.1 ENSRNOG00000057396 ENSRNOT00000084774 2 1 1 80 1 189009461 189009484 GAGATTTCACCTCACATGCG 59 189009400 189009419 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 AC114111.1 ENSRNOG00000052955 ENSRNOT00000090498 3 1 1 195 7 70452547 70452565 ACTGAATCGTAAATCCGCC 58 70452370 70452388 CTTGAGCAATCTTCTCCGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0702.4 ENSRNOG00000051251 ENSRNOT00000076064 2 1 2 62 10 70510075 70510093 CTGAGGTACGGTCCTTACC 59 70510214 70510232 CTAGAAACTGGGACAGAGC 57 Novel DesignNoJunction Rattus norvegicus 81 Rn60_10_0702.4 ENSRNOG00000051251 ENSRNOT00000076492,ENSRNOT00000076064 1 2 2 79 10 70510075 70510093 CTGAGGTACGGTCCTTACC 59 70512262 70512282 AGAAATGATGAATCCTCCGTG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA41 ENSRNOG00000058449 ENSRNOT00000091608 2 1 1 60 9 69955516 69955534 TCTGCAGCTGTCTTTATGG 58 69955556 69955576 GTGTAACAGTTTCTTTCCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0708.2 ENSRNOG00000051234 ENSRNOT00000076263 1 1 1 163 10 71158762 71159486 TTCTGGGTTTCAGGTCTGG 59 71158617 71158635 TCTAAGCAGAGCCTTTCCC 59 Novel Rattus norvegicus 81 Krt40 ENSRNOG00000013896 ENSRNOT00000018804 2 1 1 80 10 87457830 87457850 AGAGAATTCTAGACTTGCCGT 59 87457464 87457790 AGTTCGCTCTCATACTTTGAC 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000052727 ENSRNOT00000078045 2 1 1 60 4 2660543 2660564 CTCACAATTCCATTTAGGTCCA 59 2660584 2660603 AGGAAGGTCACTATCTCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055444 ENSRNOT00000081230 1 1 1 60 10 34184396 34184416 GAGAAGATTAGCATTGTCCCT 58 34184356 34184374 AATATGGACCGCTTCACGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142458.1 ENSRNOG00000054641 ENSRNOT00000089872 3 1 1 78 8 79690914 79690933 AACCTATCTGAACACTGCAG 58 79690854 79690875 TGTTGAAGTAATATCCCTCTCC 57 Novel DesignNoJunction Rattus norvegicus 81 Rn60_10_0706.2 ENSRNOG00000051046 ENSRNOT00000076677 2 1 1 110 10 70870698 70870856 CTAGGACTGACTGCCACAG 60 70870928 70870948 TCTGGAACGAAGTCTTCTCAG 60 Novel Rattus norvegicus 81 AC098022.1 ENSRNOG00000048170 ENSRNOT00000074095 1 1 1 89 7 20075981 20075999 AGAGGAAAGATGGAGCTGC 60 20076082 20076100 ATGCTTTATCCTTTCCCGC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000056499 ENSRNOT00000090344 3 1 1 60 4 38173033 38173051 AGGTGTGACTACAGCAGTC 59 38173074 38173093 ACTGAGAGTAGATTCAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056357 ENSRNOT00000079611 1 1 1 60 10 25516048 25516066 ATACTTTCCCAGAAGGCGG 60 25516006 25516024 TGGATGATCCTCACTCTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058930.1 ENSRNOG00000056692 ENSRNOT00000079014 3 1 1 86 7 144368213 144368232 CTTCATGACACCTTCATGCC 59 144368142 144368164 CAAGGTTGTACTGCTGCAG 59 Novel Rattus norvegicus 81 AABR07009715.1 ENSRNOG00000031378 ENSRNOT00000049885 2 1 1 60 2 109317593 109317616 CCTGTATCTCATAAAGTACGATGG 59 109317633 109317653 ATCCTTGTTCAGCTCTAGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052147 ENSRNOT00000084444 1 1 1 60 10 66988255 66988275 ACTAACACTGCAACAGTACAC 59 66988215 66988233 TTGTCATGTCATCCTTGCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067042.4 ENSRNOG00000053567 ENSRNOT00000081728 2 1 1 81 9 27678093 27678113 GAGACTTGTAAGGGCTGCA 60 27678030 27678050 ATCTGTGTCTTGCTTCAACAG 59 Novel Rattus norvegicus 81 AABR07067042.4 ENSRNOG00000053567 ENSRNOT00000081728 3 1 1 82 9 27678094 27678114 AGAGACTTGTAAGGGCTGC 59 27678030 27678050 ATCTGTGTCTTGCTTCAACAG 59 Novel Rattus norvegicus 81 AABR07067233.1 ENSRNOG00000059387 ENSRNOT00000081277 1 1 1 80 9 35925609 35925631 AGATTTCACCTCACATGCG 58 35925674 35925693 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055808 ENSRNOT00000083797 2 1 1 60 8 6876592 6876612 AAAGGTTACCTATGTGCTCAG 58 6876552 6876575 GTTAGGCTACTAAACATTCAGGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680442 ENSRNOG00000042736 ENSRNOT00000073764,ENSRNOT00000064626 3 2 2 67 10 87819559 87819577 ACTTGCTGTGAAACAAGCT 58 87819608 87819626 CTGCAGCCAATGATCACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC124874.3 ENSRNOG00000058855 ENSRNOT00000044263 3 1 1 69 13 82267414 82267432 CTCTTTCTCCACATCCTCG 57 82267361 82267379 TCACACCAGTCAGAATGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012826.1 ENSRNOG00000055404 ENSRNOT00000091973 1 1 1 67 2 209779347 209779366 TCAGAGATACGTTGCCACC 60 209779397 209779415 TATGAAGGGTAGCCTCCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07067403.1 ENSRNOG00000056370 ENSRNOT00000081559 1 1 1 70 9 43488601 43488619 TGAGTCCCTCTTCATCCTG 58 43488544 43488570 AAGAGGATTCCACAGATAACTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07073173.1 ENSRNOG00000054734 ENSRNOT00000082841 1 1 1 60 5 152466385 152466405 GGAGAATCTGAAGAGGACCTG 60 152467766 152467784 TCTCAGACTCCACCAAAGC 59 Novel DesignNoJunction Rattus norvegicus 81 Spn ENSRNOG00000036711 ENSRNOT00000055013 2 1 1 125 1 198576786 198577167 ATTAAGCTGGTCCCAACTCC 60 198576680 198576698 ATCGTCATCGTATTCGGCA 59 Novel InUTR Rattus norvegicus 81 AABR07037436.1 ENSRNOG00000052565 ENSRNOT00000083810 2 1 1 60 X 20734042 20734064 TAGACCTCAGTAACTTGACACTC 59 20734004 20734022 GTGTCTTGCACAAGACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000052830 ENSRNOT00000088511 2 1 1 60 8 118440378 118440399 GACCTAGGAGTTGGAATAGGAG 59 118440339 118440359 CTGCAATACCAGGTTGATGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058998 ENSRNOT00000084716 1 1 1 60 8 1160635 1160654 GCAGTATCGTAGCCAATGAG 59 1160594 1160613 CCAAGCCATTCCAATTAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059193 ENSRNOT00000091547 1 1 1 60 13 64233791 64233809 ACAAGCTCTCAAGGTCCAC 60 64233830 64233851 CCCTAAATTCCTGATGTTTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07011956.1 ENSRNOG00000060006 ENSRNOT00000091605 2 1 1 122 2 177829220 177829239 CCAAACAAGTGAAGGAACTG 57 177829324 177829343 ATGACTCCTGTCTCTTCCC 58 Novel Rattus norvegicus 81 U1 ENSRNOG00000061033 ENSRNOT00000083313 3 1 1 60 8 67919710 67919728 CCTGTGACTTCTCCAAAGG 58 67919752 67919770 AGCATAGACCCAATCCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041247.1 ENSRNOG00000030645 ENSRNOT00000041969 1 1 1 60 X 124147549 124147570 AAGCATTCATGTTCTTGAGTGG 60 124147590 124147609 AACAATCTGGTTGGATGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0050.7 ENSRNOG00000053720 ENSRNOT00000089726 2 1 1 60 20 4983366 4983385 TCGTTGGTGATAAACACCTG 58 4983325 4983343 AGTCTGATAACTGCCGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054262.2 ENSRNOG00000056526 ENSRNOT00000087754 2 1 1 79 3 145648645 145648663 AATATCTTCAGTGCTGGGC 58 145648708 145648726 ACCACAGAACCAACAGGAG 60 Novel DesignNoJunction Rattus norvegicus 81 LOC102549726 ENSRNOG00000054031 ENSRNOT00000087471,ENSRNOT00000077098 2 2 3 61 20 4871819 4871840 TCATCTCATTGTCTAACAAGCC 59 4871532 4871797 TTGAGTAGCAGCTAAGGCC 60 Novel DesignNoJunction Rattus norvegicus 81 LOC102549726 ENSRNOG00000054031 ENSRNOT00000087471,ENSRNOT00000077098 3 2 3 79 20 4871834 4871858 GTGACTAGAATGTCATGATCATCTC 59 4871532 4871797 TTGAGTAGCAGCTAAGGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07037878.1 ENSRNOG00000032797 ENSRNOT00000047875 2 1 1 60 X 34714603 34714621 CAACATTTGGGCTCATCCT 58 34714561 34714580 AACTCCTTTCCGAAGGTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000051651 ENSRNOT00000081581 3 1 1 60 8 109746320 109746339 CATCTCAGAAGCTAAGCAGG 58 109746360 109746380 AATATGTGGTGCTTTCTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007997.1 ENSRNOG00000061053 ENSRNOT00000084896 1 1 1 81 2 38217685 38217707 TCACCTCACACCAGAATGG 59 38217751 38217770 GGAGTGTTCCTCTTTCTCCA 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000056584 ENSRNOT00000084606 1 1 1 61 8 102277729 102277752 GGATACCCTATCTACTGAAATTGG 58 102277772 102277790 CATCCTTTCTCAGGGACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024757.1 ENSRNOG00000050966 ENSRNOT00000072221 2 1 1 80 16 14864550 14864573 GAGATTTCACCTCACATGCG 59 14864489 14864508 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000052284 ENSRNOT00000087562 2 1 1 60 8 73362420 73362441 AACGATACAGAGAAGGTTAGCA 59 73362381 73362399 TGCTTCATGAATTTGCGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059364 ENSRNOT00000088486 1 1 1 60 8 79444909 79444929 GGAACGATACAGAGAAGATGC 59 79444951 79444969 AGCTTCAGGAATTTGCGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052988 ENSRNOT00000092206 3 1 1 61 8 95657794 95657812 GTGTCAGTAGGTGGCAGAG 60 95657751 95657770 TGTTCGTAGATCAGAACCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000055321 ENSRNOT00000088929 1 1 1 60 8 75832514 75832532 AAAGGAGCACTCGTAAGCA 59 75832556 75832574 AAGCACCTACCTAGTCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA8 ENSRNOG00000054710 ENSRNOT00000086582 1 1 1 60 8 72701701 72701724 GTGCGATAGAAATTCACTATCTGG 60 72701664 72701684 CAGGTTTAACATGCACAAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055232 ENSRNOT00000087185 2 1 1 60 8 41669852 41669871 GTGTGGTATATGCTTGCCTC 59 41669893 41669912 GGGCCGTAATGTATCATTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094221.1 ENSRNOG00000054338 ENSRNOT00000079863 1 1 1 81 20 1045445 1045467 TCACCTCACACCAGAATGG 59 1045382 1045401 GGAGTGTTCCTCTTTCTCCA 59 Novel Rattus norvegicus 81 AABR07044268.1 ENSRNOG00000059122 ENSRNOT00000074691 2 1 1 72 20 628726 628751 CTCTGCTATACCACTTCTACCC 60 628783 628802 CCACATAGCTGATGCTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054887.1 ENSRNOG00000061217 ENSRNOT00000090602 2 1 1 80 3 173166289 173166311 TGAATCCTTCTCAGAAGAGTCTC 59 173166028 173166251 CCCAAATGTAGCCTATAGCAC 59 Novel Rattus norvegicus 81 AABR07026596.2 ENSRNOG00000055140 ENSRNOT00000088012 3 1 1 60 16 85305670 85305688 TCTTCTCCTTTCTCAGGGC 59 85305710 85305730 ATAAGTCTGCAAAGAACCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053667.1 ENSRNOG00000057409 ENSRNOT00000086998 2 1 1 85 3 119372669 119372687 CACTGAGCCATCTTTCCAG 58 119372602 119372621 CTACACTCTGAACCCTCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056303 ENSRNOT00000079927 1 1 1 60 3 123381618 123381639 ATACAGAGAAGATTAGCATGGC 58 123381659 123381678 GGAACGCTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056609 ENSRNOT00000079958 3 1 1 60 3 177005381 177005403 TACTCTAGGTATGTTGACTCCAC 59 177005421 177005441 ACAACTATTCAGGCAAGTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC095852.2 ENSRNOG00000051712 ENSRNOT00000087837 2 1 1 60 3 153521761 153521781 CAGTACCATACAGTACAGTGC 58 153521798 153521821 GTACTGTACTGTATTGTACTGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045809 ENSRNOT00000071208 1 1 1 60 16 4974801 4974822 CCACATTACCCTGAACATATCC 59 4974762 4974780 AGGCCTAACCAAGCTTAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA28 ENSRNOG00000051755 ENSRNOT00000079071 3 1 1 60 16 62218598 62218616 AAAGTGAGGCTGATTGAGC 58 62218639 62218658 GGAAGAGAACATGCGATAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC125757.1 ENSRNOG00000058467 ENSRNOT00000087795 1 1 1 78 5 2888557 2888575 TTGACCTTTCACCACAGCA 60 2888307 2888325 ACAAGTGCTGCCAAATGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07031272.1 ENSRNOG00000051767 ENSRNOT00000078083 3 1 1 93 18 6828616 6829558 ATGGATGAACATTCGACTTCTG 59 6828544 6828564 TATCCAAACCAAGGTCCTCTG 60 Novel Rattus norvegicus 81 AABR07046731.1 ENSRNOG00000055458 ENSRNOT00000087006 1 1 1 134 5 3899329 3899347 AATAACCCTCTGAGTGCGG 60 3897713 3897731 CTTGAGTAGTCGGAGCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AC114452.1 ENSRNOG00000054395 ENSRNOT00000080427 2 1 2 80 14 36590951 36590970 CAATGCCCATATTGTCCCAG 59 36590449 36590908 TGGCAGATTCTTGACCCAG 60 Novel Rattus norvegicus 81 AABR07062670.1 ENSRNOG00000053605 ENSRNOT00000077476 1 1 1 80 6 2527319 2533741 CAAAGAGCAGCTCAACTCC 59 2523897 2523915 GTGTCCTTCTTGAACCTGC 59 Novel Rattus norvegicus 81 AABR07062670.1 ENSRNOG00000053605 ENSRNOT00000077476 3 1 1 81 6 2527318 2533740 AAAGAGCAGCTCAACTCCT 59 2523895 2523914 CTGTGTCCTTCTTGAACCTG 59 Novel Rattus norvegicus 81 AABR07000145.1 ENSRNOG00000040316 ENSRNOT00000087543,ENSRNOT00000062051 2 2 2 80 1 1441915 1441935 CAATCTTTCTCTGAGTCTGGG 58 1440628 1441878 CTAAAGGAGTGTACATCTTCTAGC 59 Novel Rattus norvegicus 81 AABR07046819.1 ENSRNOG00000053781 ENSRNOT00000080473 1 1 1 80 5 8047829 8047849 ACTAAGAAAGATGCATGTGCC 59 8043910 8047791 GAGACAGTTGTCATTTGTACTCC 60 Novel Rattus norvegicus 81 AABR07031526.1 ENSRNOG00000053150 ENSRNOT00000083801 1 1 1 80 18 17876100 17878481 TTCCTTCTCCTGGTTCTGG 59 17876038 17876057 TTCGGCCTTAAGATGAGAGG 59 Novel Rattus norvegicus 81 AABR07047044.3 ENSRNOG00000061815 ENSRNOT00000086850 3 1 1 76 5 17113874 17123496 TACATCGCAGTGACAAGTG 58 17113816 17113834 ACAATACTTGGCACACCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07060593.2 ENSRNOG00000055304 ENSRNOT00000088685 3 1 1 94 4 83199052 83199070 TATTCAGCCTAAGCTGGCC 60 83199126 83210516 AATTTCCTTGCTGTTCACCTG 60 Novel Rattus norvegicus 81 AABR07029768.2 ENSRNOG00000055459 ENSRNOT00000085491 2 1 1 85 10 49335102 49335121 ATGAACCGGAATGAACAGGA 60 49333875 49335054 TGTGACCTGATGTCACCAC 60 Novel Rattus norvegicus 81 AABR07060769.1 ENSRNOG00000052931 ENSRNOT00000088910 1 1 1 81 4 93013087 93013106 GAGCTTGTCCTGTATCAGGA 59 93013149 93033357 AACTCCACCCTTCTTGATGG 60 Novel Rattus norvegicus 81 AABR07029895.1 ENSRNOG00000055441 ENSRNOT00000090175 1 1 1 60 10 57952034 57952053 CTCGCGTTAAAGTCCAAGTC 59 57929747 57929766 TTAAATCATCTCTGCCGTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07047212.2 ENSRNOG00000061754 ENSRNOT00000077918 1 1 1 80 5 24223107 24225345 ACCAGCAATTAATCAGATGCG 60 24223047 24223065 CAGTGTCTGCTACTGTCCA 59 Novel Rattus norvegicus 81 AABR07047213.1 ENSRNOG00000055469 ENSRNOT00000079997 3 1 1 75 5 24280104 24280122 CTACCGCTAACTTGTCTGC 58 24275454 24275473 TCACCCATTGAAGTAAAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07047256.1 ENSRNOG00000059459 ENSRNOT00000079809 3 1 1 81 5 25339605 25340939 AGTACAGCCAAGATCCCAC 59 25340981 25341002 CTGGTACTAACTTCTGTCATGC 59 Novel Rattus norvegicus 81 AABR07047309.1 ENSRNOG00000061158 ENSRNOT00000086860 2 1 1 105 5 27673678 27690325 TTGTCAAGGCTTCTCTTCAG 58 27673592 27673611 TTACCTGAGTCTGGGAAGTG 59 Novel Rattus norvegicus 81 AABR07061237.1 ENSRNOG00000055832 ENSRNOT00000088100 2 1 1 81 4 111238464 111238484 GGAAATGGGAACGAGATACCT 60 111238521 111242919 GGAATATGTTTCATAGTAGCCACTC 60 Novel Rattus norvegicus 81 AABR07000493.1 ENSRNOG00000053291 ENSRNOT00000085786 1 1 2 81 1 14938553 14949524 GAATTCAAGCATGCAATGGT 58 14949568 14949586 ACACGTAGGTTGAGATCCA 58 Novel Rattus norvegicus 81 AABR07030276.1 ENSRNOG00000051945 ENSRNOT00000086543 2 1 1 61 10 79210687 79210706 ATCAACTTTGACGTTTGCCA 59 79208817 79210663 ATAGCGACAGTGCTCTACG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07048046.1 ENSRNOG00000060050 ENSRNOT00000078601 3 1 1 62 5 58717988 58718006 GGTGCGTTAAGATGGAGGT 60 58718032 58721874 CTCAGAGAAACACCACCGT 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07015994.1 ENSRNOG00000051567 ENSRNOT00000079143 3 1 1 80 14 89947707 89947725 TGCCAATCACTATGAGCCT 59 89898023 89947665 AGGATTGACTTGTCTGTCTCC 60 Novel Rattus norvegicus 81 AABR07061382.2 ENSRNOG00000054709 ENSRNOT00000091643 3 1 1 109 4 120130204 120132212 TGAGAGCAGGAGAAGATGC 59 120130113 120130131 CATTGAACCATTCGGTGGC 60 Novel Rattus norvegicus 81 AABR07048322.1 ENSRNOG00000059020 ENSRNOT00000081402 3 1 1 81 5 73297556 73326542 CAGACAATGGAGATGCCTG 58 73297493 73297513 CACCTGATCTCTTTCTTTGCA 59 Novel Rattus norvegicus 81 AABR07016310.2 ENSRNOG00000053463 ENSRNOT00000077759 2 1 1 60 14 96538000 96538020 TCCTCAGAGAAACAAGAAACC 58 96534411 96534430 AGTCAGGAAGAATTTCTGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07016310.2 ENSRNOG00000053463 ENSRNOT00000077759 3 1 1 60 14 96537999 96538020 TCCTCAGAGAAACAAGAAACCA 60 96534411 96534430 AGTCAGGAAGAATTTCTGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07061400.1 ENSRNOG00000053471 ENSRNOT00000083513 1 1 1 64 4 121701599 121703142 CTCAATACCAGTGTGCAGG 58 121703170 121703188 AGACATGTCAGCTGATGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07000670.1 ENSRNOG00000060376 ENSRNOT00000089045 3 1 1 89 1 22757723 22757743 CGGTTCTGAATGAACATTTCG 58 22757471 22757672 TTGTGTATTTGCTCTCGGG 58 Novel Rattus norvegicus 81 AABR07030566.2 ENSRNOG00000053962 ENSRNOT00000081928 2 1 1 80 10 93172836 93181091 GAAAGCCATTTCAGAGAATGTC 58 93181131 93181150 TCTTTCTTGGTCAGCTTGAC 58 Novel Rattus norvegicus 81 AABR07016572.1 ENSRNOG00000061005 ENSRNOT00000091905 1 1 1 80 14 104709202 104709221 GGTGTCACAAACCTTCAAGG 59 104709264 104714090 ATCATCACAGGACCTGCAC 60 Novel Rattus norvegicus 81 AABR07030568.2 ENSRNOG00000052490 ENSRNOT00000080878 3 1 2 81 10 93229720 93232204 TTCCAGCTGACTCTTCTGG 59 93232247 93232267 GAAATGTCTGGCTTACCAGTC 59 Novel Rattus norvegicus 81 AABR07061807.2 ENSRNOG00000052522 ENSRNOT00000077582 2 1 1 102 4 146300251 146300270 TTCCATAGGAAGACACAGCA 59 146293042 146300090 GGGAAGAGAATCTGTTAAGATACC 59 Novel Rattus norvegicus 81 AABR07049032.1 ENSRNOG00000054520 ENSRNOT00000083921 1 1 1 62 5 100753050 100753068 GATTCTTGAGGTCAAGCGA 58 100757606 100757624 CAATGGAGCTGGTTGTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049134.4 ENSRNOG00000052948 ENSRNOT00000079931 3 1 1 135 5 107289760 107289778 TTTCCTTTGCTGGAACCTC 58 107289877 107291658 CAGAAGTCCAGAGGGAGAG 59 Novel Rattus norvegicus 81 AABR07030690.2 ENSRNOG00000061583 ENSRNOT00000083213 3 1 2 60 10 99706353 99706371 CTCCCGTATTAACATGGGC 58 99668374 99668392 ATGACTTCTGAGTCCAGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC128967.2 ENSRNOG00000054781 ENSRNOT00000091730 2 1 1 87 4 156963354 156963374 CCTGATGGTTCATCAATGCAG 60 156965848 156965866 CTCTTCCTGCAGGACTGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030706.2 ENSRNOG00000059380 ENSRNOT00000082818 2 1 1 91 10 100912504 100913756 TATCCGAGTCCTCACAGGA 59 100912431 100912450 GATGGTTTGAGGGCTAACAG 59 Novel Rattus norvegicus 81 AABR07049288.1 ENSRNOG00000054667 ENSRNOT00000087340 1 1 1 124 5 114037379 114037397 GTTTCCATTGCTTCCGGAC 60 114114161 114114179 CCACTTCTTTGGTCTCTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030714.1 ENSRNOG00000054938 ENSRNOT00000077545 3 1 1 84 10 101113035 101113053 TATCAGCCCAACAGGAGAG 59 101113095 101123582 GATCGAGGAGAAATAAGATACAGAG 59 Novel Rattus norvegicus 81 AABR07049292.1 ENSRNOG00000058472 ENSRNOT00000088984 3 1 1 81 5 114338447 114338465 CCTGTTAGAGAATGAGCCC 57 114205282 114338405 TGTAGATTTCCTTCTATCTGCG 58 Novel Rattus norvegicus 81 AABR07062069.2 ENSRNOG00000061632 ENSRNOT00000087235 1 1 1 80 4 160343978 160343996 GTCCATCCCAGGAGAAGAC 59 160341908 160343935 TCCTTCTGTGATCTGTAGCC 59 Novel Rattus norvegicus 81 AABR07062157.1 ENSRNOG00000057273 ENSRNOT00000079638 3 1 1 64 4 162999665 162999683 AGAACAGCTGTACAGAAGC 58 162999710 163008805 TCTTTGTTTGTCCGTTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030910.1 ENSRNOG00000058129 ENSRNOT00000082454 1 1 1 81 10 108668315 108668334 AAACAAGTGCACTGTAGCAG 59 108667852 108668271 TGGAGGTGCTCACATTCTG 60 Novel Rattus norvegicus 81 AABR07030911.2 ENSRNOG00000056589 ENSRNOT00000078433 1 1 1 90 10 108728498 108728516 TCTACACCCAACAAGCTGG 60 108726672 108728444 AATTCTCCACCAGCAGACC 60 Novel Rattus norvegicus 81 AABR07017266.1 ENSRNOG00000051924 ENSRNOT00000080450 3 1 1 80 15 20232176 20232196 GAGAAACGTTTCACAAGACCT 59 20232238 20232986 AGGTAAGGCCGCAATACTC 60 Novel Rattus norvegicus 81 AABR07062350.1 ENSRNOG00000053476 ENSRNOT00000081475 1 1 1 110 4 170476688 170476706 GATTCCTCAGTAGCCACCC 60 170473542 170473560 TCAGTGGTTCAGGAAGTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049669.1 ENSRNOG00000055693 ENSRNOT00000092111 2 1 1 74 5 132436991 132437012 GCAACATTATGGCTATACAGAC 57 132438459 132438479 GCTCTTTCATCTCCATCTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07045658.1 ENSRNOG00000055472 ENSRNOT00000086208 1 1 1 80 20 55724651 55729674 AGGAGATCATTAGCTGATGAGTG 60 55729708 55729732 CCATGATACATCAATAGGAATCTGG 59 Novel Rattus norvegicus 81 AABR07017513.1 ENSRNOG00000060872 ENSRNOT00000080915 2 1 1 106 15 24879551 24879570 AGACTGAACTTGAACTGGGA 59 24879637 24888361 GGTAACCTATTCCAGGGTCTC 59 Novel Rattus norvegicus 81 AABR07031612.1 ENSRNOG00000051417 ENSRNOT00000091979 2 1 1 80 18 22405699 22405717 TGATGTAGCAACACTGCCA 60 22405235 22405658 ATGAAGCACCTGAGTTTAACAG 59 Novel Rattus norvegicus 81 AABR07017770.2 ENSRNOG00000061293 ENSRNOT00000089143 2 1 1 91 15 30883560 30883802 TTTGTCTGGATGTAATGTGGC 59 30883855 30883873 ATGAACACTCCAGGGTGAC 59 Novel Rattus norvegicus 81 AABR07031674.5 ENSRNOG00000061675 ENSRNOT00000080852 1 1 1 80 18 25249783 25249802 CACAGAACTCTCACAAAGCA 59 25249632 25249740 TTGTCTTGAGCAAGATGCC 59 Novel Rattus norvegicus 81 AABR07031674.5 ENSRNOG00000061675 ENSRNOT00000080852 2 1 1 80 18 25249784 25249803 CCACAGAACTCTCACAAAGC 59 25249633 25249741 TGTCTTGAGCAAGATGCCA 60 Novel Rattus norvegicus 81 AABR07062544.1 ENSRNOG00000053068 ENSRNOT00000080067 3 1 1 63 4 182329578 182329598 GGAGATAGAGAAGTGGGAAGG 59 182329623 182330269 TGCCTTCTGTCTTCTGGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07017815.1 ENSRNOG00000060777 ENSRNOT00000081380 1 1 1 83 15 31311443 31319303 AATGTTTGGAGGAAGCAATGG 60 31319348 31319366 TTCACAGTCAGAGAAGCCC 59 Novel Rattus norvegicus 81 AABR07017815.1 ENSRNOG00000060777 ENSRNOT00000081380 2 1 1 84 15 31311442 31319303 TAATGTTTGGAGGAAGCAATGG 59 31319348 31319366 TTCACAGTCAGAGAAGCCC 59 Novel Rattus norvegicus 81 AC114389.2 ENSRNOG00000056441 ENSRNOT00000087503 2 1 1 85 1 48267904 48267923 ACAAATTCCATGTGAGTGCC 59 48266295 48267856 GTTTCAGAAGCTGCCTTGG 60 Novel Rattus norvegicus 81 AABR07001518.1 ENSRNOG00000055141 ENSRNOT00000081808 1 1 1 80 1 49132535 49133881 TCAGAAACACAGGATGCAC 58 49133922 49133943 GATTTCTGTGACTTTGCAAACC 59 Novel Rattus norvegicus 81 AABR07031759.1 ENSRNOG00000059937 ENSRNOT00000079229 1 1 1 60 18 32992379 32997310 GCCATAAAGATACAGCTTACAC 57 32997331 32997349 TTTGCTCAGACTGCTAAGG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07018050.1 ENSRNOG00000054986 ENSRNOT00000085916 1 1 1 80 15 37345780 37345801 CATCAAGACAACTTATGGTCCA 59 37343450 37345740 TTGCATGGTCTGAATCTGAG 58 Novel Rattus norvegicus 81 AC118094.1 ENSRNOG00000058154 ENSRNOT00000087125 3 1 1 81 5 157135474 157135493 GTAAACGGATGCATGATGCA 59 157135534 157136078 CTTCTTGGAGCTTCCATTTCTC 59 Novel Rattus norvegicus 81 AABR07018262.2 ENSRNOG00000054573 ENSRNOT00000085802 2 1 1 80 15 49552958 49552976 GAAGGTGGGTCAAAGTACG 58 49547656 49552915 CTGCATTAATGCACACTTGG 58 Novel Rattus norvegicus 81 AABR07050321.1 ENSRNOG00000057262 ENSRNOT00000087457 1 1 1 82 5 161085467 161087498 CAGAACAGATGCGTCTTTCC 59 161085404 161085425 GTCTGAACTCAGGAATTGACAC 59 Novel Rattus norvegicus 81 AABR07050321.1 ENSRNOG00000057262 ENSRNOT00000087457 3 1 1 85 5 161085472 161087502 AATGCAGAACAGATGCGTC 59 161085405 161085425 TCTGAACTCAGGAATTGACAC 58 Novel Rattus norvegicus 81 AABR07063642.1 ENSRNOG00000059067 ENSRNOT00000088515 1 1 1 97 6 39128154 39128172 ATGTCTGGGAATGGTTTGG 58 39128232 39134838 CAAAGGTACCTGGCTTATCC 58 Novel Rattus norvegicus 81 AABR07063649.3 ENSRNOG00000058529 ENSRNOT00000083922 3 1 1 82 6 39504686 39504704 CACACTGAAGCAACTGACC 59 39504750 39515326 TGCTGATAAGCTTGTGGTG 58 Novel Rattus norvegicus 81 AABR07002010.1 ENSRNOG00000056327 ENSRNOT00000087034 1 1 1 81 1 64818706 64829986 GGAGTAAAGTAAGGGATGTTCTG 59 64818647 64818667 TCAGAGGGATAACTGAATCGT 58 Novel Rattus norvegicus 81 AC094126.1 ENSRNOG00000055715 ENSRNOT00000087064 2 1 1 84 5 164883512 164883530 TGGAACCAAGACCTGTCAC 60 164883021 164883464 CAGGGTCTCTTCAGCTCTG 60 Novel Rattus norvegicus 81 AABR07063724.1 ENSRNOG00000057498 ENSRNOT00000090534 2 1 1 207 6 44009277 44009295 CCCAAACTTGCGGAAATCC 60 44007981 44009107 ATTAAAGGAGTCAGCAGCCT 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07063724.1 ENSRNOG00000057498 ENSRNOT00000090534 3 1 1 208 6 44009277 44009295 CCCAAACTTGCGGAAATCC 60 44007980 44009106 AATTAAAGGAGTCAGCAGCC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07063740.1 ENSRNOG00000052618 ENSRNOT00000077838 2 1 1 80 6 44586752 44614729 TTTACAAGTGGCACCTTTCAC 59 44614770 44614789 GAATGAGTCAGGATTGCCAC 59 Novel Rattus norvegicus 81 AABR07063741.1 ENSRNOG00000053810 ENSRNOT00000089052 1 1 1 60 6 45023557 45024524 GGATTTGTGAGTCACTATCCA 58 45024543 45024564 GAGTAACTGCTCTCAATTGGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032417.1 ENSRNOG00000061266 ENSRNOT00000083596 2 1 1 80 18 64654741 64658478 ATCTTCAAGCTGCAGAGGA 59 64658520 64658540 TGCCTCCTTGTTATTGATCAC 58 Novel Rattus norvegicus 81 AABR07032417.1 ENSRNOG00000061266 ENSRNOT00000083596 3 1 1 80 18 64654742 64658479 TCTTCAAGCTGCAGAGGAG 59 64658520 64658541 TTGCCTCCTTGTTATTGATCAC 59 Novel Rattus norvegicus 81 AABR07032422.1 ENSRNOG00000055882 ENSRNOT00000077969 2 1 1 60 18 64792694 64794071 AACTGGTCCTTGAATGCCT 59 64792652 64792672 AGGAGAAGCAGTTAGAATGTC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07002674.1 ENSRNOG00000059266 ENSRNOT00000090105 1 1 1 93 1 80191600 80191618 GTTTGGTATCAGGCAAGCG 60 80190672 80191545 CATCTCACCTCTTCTCCTGAC 60 Novel Rattus norvegicus 81 AABR07063746.1 ENSRNOG00000054844 ENSRNOT00000081221 2 1 1 81 6 45649321 45649886 TCATCTGCTCCAAATCTACAC 58 45649929 45649947 GTGGTGCTCTTGACTTCTG 59 Novel Rattus norvegicus 81 AABR07018764.1 ENSRNOG00000060781 ENSRNOT00000079421 2 1 1 60 15 72057973 72078623 TCAGTTATATCAGCCAGTCAC 57 72078643 72078663 TATCTGCATTTCCTGGTACTC 57 Novel DesignNoJunction Rattus norvegicus 81 AC134759.1 ENSRNOG00000057198 ENSRNOT00000088115 2 1 1 75 1 82371650 82371668 CTTCAGCTGACCTGTTCTC 58 82372846 82372864 TTGTCGTCTTCTTTCTGCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07019019.1 ENSRNOG00000057930 ENSRNOT00000089703 3 1 1 135 15 83942054 83945355 TTGTGGAGTGAAGCTATGC 58 83941937 83941958 ACTTAGGTAGTCTCTACGTGAC 59 Novel Rattus norvegicus 81 AC111292.2 ENSRNOG00000055447 ENSRNOT00000085531 2 1 1 188 3 4007731 4012303 GGAACACAGAAGTCCTTGC 59 4012455 4012473 TCCAACTTCAGGGTGTCTG 59 Novel Rattus norvegicus 81 AABR07019086.1 ENSRNOG00000053968 ENSRNOT00000088613,ENSRNOT00000088122 3 2 2 80 15 87487128 87491038 GTTACCAGATTGCCACACTG 59 87487067 87487087 TCTCTTGAAGCAGCTATCTGG 60 Novel Rattus norvegicus 81 AABR07051308.1 ENSRNOG00000058862 ENSRNOT00000079208,ENSRNOT00000083718 1 2 2 80 3 4734834 4735902 GATCATGAGGAAGGTGACCA 59 4735945 4735963 GTCCTCTTCCTTACTCGCT 59 Novel Rattus norvegicus 81 AABR07032640.2 ENSRNOG00000061667 ENSRNOT00000079857 1 1 1 81 18 75694844 75694862 TAAGGAGGCAAGCAGTGAG 59 75693408 75694800 CGAATCTTGAGCCTTCTTCC 59 Novel Rattus norvegicus 81 AABR07051400.2 ENSRNOG00000059495 ENSRNOT00000085689 1 1 1 80 3 9333285 9333680 ATACTGGAGCCAATGGACC 59 9333223 9333242 AAGTGTTGAAACTGCAGGTC 59 Novel Rattus norvegicus 81 AABR07072853.2 ENSRNOG00000056129 ENSRNOT00000078431 1 1 1 110 3 9945846 9945865 GATCGTCTCAACACGTTTGG 60 9942984 9945773 ACCATTGCATTTGCACCTG 60 Novel Rattus norvegicus 81 AABR07051515.1 ENSRNOG00000058364 ENSRNOT00000080459 1 1 1 80 3 14660158 14700283 TGCAGATCAGGAGTTGGAG 59 14660096 14660114 GAGTTCTATGGAGCTCCCG 59 Novel Rattus norvegicus 81 AABR07019437.5 ENSRNOG00000057052 ENSRNOT00000087221 2 1 1 85 15 105481063 105481871 CTTCAATGTGTATGCTCCGT 58 105481916 105481937 GATCAACAGCTTAACGATTTCC 58 Novel Rattus norvegicus 81 AABR07064724.3 ENSRNOG00000057000 ENSRNOT00000077355 3 1 1 85 6 91688845 91688864 TCATGTTGATGTACGACGAC 58 91684651 91688799 CGAAGTGTGAACCTTCATCTC 59 Novel Rattus norvegicus 81 AABR07032843.1 ENSRNOG00000057359 ENSRNOT00000088232 2 1 1 91 18 85642565 85643899 AAAGGACAGGGAAATATGCA 57 85643953 85643971 TAGAGTCCAGTCCAGAGTG 57 Novel Rattus norvegicus 81 AABR07019442.2 ENSRNOG00000059922 ENSRNOT00000090685 3 1 1 80 15 105942205 105942227 TCAGGACAGAATTAGGAAGATGG 60 105942267 105942936 GGGAAGGAGTGTGACTCTG 59 Novel Rattus norvegicus 81 AABR07071904.2 ENSRNOG00000061879 ENSRNOT00000089191 3 1 1 80 1 94834266 94834286 ATCTTCAAGTTGGAGCATGGA 60 94834325 94836521 ATACATGCTCAGATCTGGAAGG 60 Novel Rattus norvegicus 81 AABR07033283.1 ENSRNOG00000059856 ENSRNOT00000085016 1 1 1 79 11 15377893 15377911 AGCTAAACACTCTGGACGG 59 15375947 15375965 CATAACGGTGTTCGAACGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07020404.1 ENSRNOG00000058698 ENSRNOT00000080690 1 1 1 60 13 24516795 24520522 CCATCTCCAGTTAATTCAAGGT 58 24516756 24516776 AGGATTCCATTCATCTTCCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051813.1 ENSRNOG00000053236 ENSRNOT00000088694 1 1 1 80 3 22780928 22782957 GAATCCTACCTGGCCAGAC 60 22783001 22783019 GTAAGAGGCTGGCTCTGTC 60 Novel Rattus norvegicus 81 AABR07065049.2 ENSRNOG00000053831 ENSRNOT00000084251 3 1 1 61 6 105833824 105833843 ATCGAAGGATTAGAACCAGC 58 105823696 105823714 CTCCTCCTGGTGTAGTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AC094784.1 ENSRNOG00000059931 ENSRNOT00000084426 2 1 1 122 11 30977552 30978838 AGTCTTCGGTCTACAGAGAC 58 30978921 30978941 GGTCACAGTCTGTCTTTATCC 58 Novel Rattus norvegicus 81 AABR07051957.1 ENSRNOG00000053695 ENSRNOT00000078384 3 1 1 80 3 30280789 30283064 AAAGAAGCCAGGTTTGGGT 60 30280727 30280745 CCCAGTTTGGTTGACAGTG 59 Novel Rattus norvegicus 81 AABR07051982.2 ENSRNOG00000060164 ENSRNOT00000078770 1 1 1 142 3 30894415 30894436 ACTCCCAATCTTAGAAGAGGTG 59 30892835 30892853 CAACCTGGAAGGACTCTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065124.2 ENSRNOG00000061785 ENSRNOT00000077712 3 1 1 98 6 110909899 110913919 GAAATCTGGTTGAACTACTCAGC 60 110909823 110909841 GGGTCAAGACTGGTACAGG 59 Novel Rattus norvegicus 81 AABR07003349.1 ENSRNOG00000055821 ENSRNOT00000086165 2 1 1 65 1 106862818 106862836 GTCAAACAACAGTCCCTGG 59 106861357 106862789 CAGCTCCCTTGTAAATGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065190.1 ENSRNOG00000054202 ENSRNOT00000091539 3 1 1 62 6 114631026 114631044 CAGCATATTCCATGCCCTG 59 114599047 114599070 TGTCATGAGTATATTCTGGGTCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07020987.1 ENSRNOG00000059225 ENSRNOT00000091737 3 1 1 80 13 50809395 50809413 TATCCTCTCCCTGGAAGGA 58 50809456 50810027 GGTGGAATTCTACCCTTCCT 59 Novel Rattus norvegicus 81 AABR07052085.2 ENSRNOG00000052827 ENSRNOT00000080064 3 1 1 80 3 35805050 35808097 TTGCTATAAAGGAGAAGACCCA 59 35808136 35808156 TTGCCAGTAGTCTATAGTGGT 58 Novel Rattus norvegicus 81 AABR07003354.1 ENSRNOG00000052081 ENSRNOT00000089175 1 1 1 80 1 107149576 107149596 AAGAAGAACACAAGGCATGAC 59 107144614 107149535 TTCATTCGGTGCTTTGAAGG 59 Novel Rattus norvegicus 81 AABR07052195.1 ENSRNOG00000051723 ENSRNOT00000084104 1 1 1 93 3 41634433 41642436 GGTTAAGTGGAGAGCTGGA 59 41634358 41634382 CCATCTCTTTATCTCATATTCGTCC 59 Novel Rattus norvegicus 81 AABR07021213.1 ENSRNOG00000055995 ENSRNOT00000086787 2 1 1 84 13 60825108 60825127 GCCAGTGATATGGAGTCTCC 60 60824903 60825062 CCTTGTATTCGATGCCACTG 59 Novel Rattus norvegicus 81 AABR07065274.1 ENSRNOG00000060324 ENSRNOT00000081529 3 1 1 81 6 118508322 118518755 ATGAGAAAGTGGCTTCATTCTC 59 118518794 118518815 CATGTAGTGAGTACAAGCTCCT 60 Novel Rattus norvegicus 81 AABR07052388.1 ENSRNOG00000054733 ENSRNOT00000077132 2 1 1 80 3 50657397 50657416 GACAATTGCAAGATGCAGAC 58 50657456 50657758 ACATTAATTCCGCAGATCTTCC 59 Novel Rattus norvegicus 81 AC113858.1 ENSRNOG00000053686 ENSRNOT00000078479 1 1 1 61 13 68937803 68937821 ATGCTCACCAGACCTTCTG 59 68937846 68942324 GTGGAGACCTGAGAAGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07003449.1 ENSRNOG00000051655 ENSRNOT00000089769 2 1 1 60 1 110026784 110028035 TCTCCATCAGTTGGAATGTCC 60 110028055 110028075 AAATCTGATTGGCAAGAGCTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07021411.2 ENSRNOG00000052913 ENSRNOT00000083498 1 1 1 83 13 70840678 70840696 AACACTGAGACAAAGTGCT 57 70840741 70841176 CTTCTTACCCTTGTTGAAAGC 58 Novel Rattus norvegicus 81 AABR07021419.1 ENSRNOG00000052817 ENSRNOT00000088938 2 1 1 70 13 71145690 71145708 TCCCAATGTCTACTGTGCC 59 71147599 71147617 GAGTCAAGTCCCTCTGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07052458.1 ENSRNOG00000058327 ENSRNOT00000092139 2 1 1 84 3 55021847 55021871 CTTCAAGATATGTGGAATCTTGGAG 60 55013346 55021807 CCATTGGTACCTTCTTCATGG 59 Novel Rattus norvegicus 81 AABR07065343.1 ENSRNOG00000058233 ENSRNOT00000087375 3 1 1 101 6 121991280 121991298 CAAAGATGCAGAAGCTTGG 57 121991363 122000767 CTTCTGATCTGCACCTTGG 58 Novel Rattus norvegicus 81 AABR07052521.1 ENSRNOG00000052533 ENSRNOT00000088745 1 1 1 84 3 59272198 59272216 CTTGTGAGGAGAGTGGAGG 59 59268830 59272152 GGGTACTTGACCTGAATTGAG 59 Novel Rattus norvegicus 81 AABR07021494.1 ENSRNOG00000051559 ENSRNOT00000089910 2 1 1 80 13 74763222 74763242 GCTCAACATTTATGCTCACCT 59 74763283 74764029 GATTCCAAAGGAGTGCTCTG 59 Novel Rattus norvegicus 81 AABR07021717.1 ENSRNOG00000057638 ENSRNOT00000090606 3 1 1 95 13 87438520 87442513 CAGGATACAGACTGAGGCT 58 87442572 87442590 ACCACCAGTCCTTGATCTG 59 Novel Rattus norvegicus 81 AABR07052589.1 ENSRNOG00000054867 ENSRNOT00000081267 2 1 1 93 3 64853424 64853442 AGAAAGCACAACTCCTCCA 59 64853499 64856313 AGTTGTTGGGCTTTCTGGT 60 Novel Rattus norvegicus 81 AABR07065429.1 ENSRNOG00000055861 ENSRNOT00000088940 3 1 1 85 6 128344591 128345291 ACCAAGTTGATGGTACTTGG 58 128345339 128345357 AGTACAAGGAGGAATGGGA 57 Novel Rattus norvegicus 81 AABR07052608.1 ENSRNOG00000051580 ENSRNOT00000089321 2 1 1 106 3 65954408 65954426 CTCTGTCCAGTCAGTTGGA 59 65954496 65992061 AGAATCACCACTAGCTGCT 58 Novel Rattus norvegicus 81 AABR07052730.2 ENSRNOG00000053273 ENSRNOT00000086513 2 1 1 72 3 71097715 71099268 TGTTCCAGGTGTTGGTCTG 60 71097661 71097683 GGCTCAATAGAACTGATGAACTG 60 Novel DesignRelaxed Rattus norvegicus 81 AC128915.1 ENSRNOG00000053197 ENSRNOT00000085177 1 1 1 146 13 98559816 98559834 GTACAGAGTCCATGCCAGG 60 98560443 98560461 GATGCCTTTCGCCTAAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07034795.1 ENSRNOG00000052746 ENSRNOT00000091222 1 1 1 80 11 89832358 89834257 GGTAATAAAGCTGAAACACGG 58 89834296 89834317 GATCATTGAGGTCTTCTACTCC 58 Novel Rattus norvegicus 81 AABR07065601.1 ENSRNOG00000051890 ENSRNOT00000083112 2 1 1 81 6 136942517 136942540 GAGGTGATTCTGTCTTTGTTAAGG 60 136942579 136942758 ATCCTAGAAGTTGCTGGACC 59 Novel Rattus norvegicus 81 AABR07004241.1 ENSRNOG00000055614 ENSRNOT00000081182 2 1 1 86 1 132343962 132348771 CCATTACTCTAGGTATTGTATGAGG 58 132343900 132343919 GTGTCTACAGCTCAATTCCA 58 Novel Rattus norvegicus 81 AABR07035008.1 ENSRNOG00000053067 ENSRNOT00000081463,ENSRNOT00000081902 2 2 3 86 12 3223496 3223514 TGAGGTGTAGGCTTGACAG 59 3223558 3301971 CAGTAGAAGTCTTTAAGACAGATGC 60 Novel Rattus norvegicus 81 AABR07022053.1 ENSRNOG00000056789 ENSRNOT00000084790 2 1 1 82 13 104469600 104469621 AAGGGAAACTAAAGCAAACGAG 60 104469664 104470644 TGACAGCCTCTTGAATCGT 59 Novel Rattus norvegicus 81 AABR07052897.3 ENSRNOG00000060635 ENSRNOT00000085939 3 1 2 81 3 83082222 83134231 CAGGATTTCCAGGAACTTCAC 59 83082161 83082180 TCATTTGCTTCATCCAGCAG 59 Novel Rattus norvegicus 81 AABR07004254.1 ENSRNOG00000053587 ENSRNOT00000086737 1 1 1 85 1 134029111 134030285 GGTCTCCATATTCCTATAGGCA 59 134029047 134029065 TGTAGCATGGTGGGTTGAG 60 Novel Rattus norvegicus 81 AABR07065814.5 ENSRNOG00000055537 ENSRNOT00000084386 2 1 1 67 6 142405223 142405346 AAGGTTTGCACTGTGAGGT 60 142405174 142405192 CAATGACCCTTTAGGCTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07004364.1 ENSRNOG00000060303 ENSRNOT00000086092 2 1 1 83 1 139197600 139199112 AGACAGTGCCTAGAAAGAGTC 59 139197537 139197555 TTCCTTAGGGCAGGTTTCC 59 Novel Rattus norvegicus 81 AABR07024457.1 ENSRNOG00000059374 ENSRNOT00000080560 2 1 2 86 16 450876 451583 TGGCAAACATGAAGAAACAG 57 450809 450828 ATTTCTTTCTTGGTGGTGCT 58 Novel Rattus norvegicus 81 AABR07035307.1 ENSRNOG00000060644 ENSRNOT00000081526 3 1 1 80 12 10017435 10019456 TTCCAGAATTCAGATGACGC 58 10017374 10017392 AATCCTCTCGACTCCACTG 59 Novel Rattus norvegicus 81 AABR07053198.1 ENSRNOG00000054398 ENSRNOT00000087858 1 1 1 60 3 96097656 96097674 TCACCTCTTTGTGCTTCTG 58 96129253 96129271 ATCCTTAGGGCCATCTTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053198.1 ENSRNOG00000054398 ENSRNOT00000087858 3 1 1 61 3 96097661 96097679 TCTTTGTGCTTCTGCACAG 59 96129259 96129277 TGTCAAATCCTTAGGGCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035309.1 ENSRNOG00000054511 ENSRNOT00000089547 1 1 2 105 12 10136853 10136871 TACTTCTCAACCACCCAGC 59 10130842 10136784 CCAAAGCTCCTTCTTGGAC 59 Novel Rattus norvegicus 81 AABR07035309.1 ENSRNOG00000054511 ENSRNOT00000089547 3 1 2 107 12 10136854 10136873 CATACTTCTCAACCACCCAG 58 10130842 10136784 CCAAAGCTCCTTCTTGGAC 59 Novel Rattus norvegicus 81 AABR07053450.1 ENSRNOG00000056480 ENSRNOT00000086990 2 1 1 82 3 107406274 107406292 AGCTAATAGCTCTCGAGCT 58 107403112 107406231 CATGTGGAATCATTATCTCAGC 57 Novel Rattus norvegicus 81 AC117065.1 ENSRNOG00000052121 ENSRNOT00000077316 3 1 1 88 12 16240740 16240758 GAGGCTTGGAAAGCAAGAC 59 16240556 16240688 CTAGAGCACTCGGCTTCTC 60 Novel Rattus norvegicus 81 AABR07004549.1 ENSRNOG00000059330 ENSRNOT00000086488 1 1 1 60 1 147424575 147435610 GAACTACCTCATCCCGAAGG 60 147424534 147424552 GTCATGCAGCACTGATGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07066748.1 ENSRNOG00000051413 ENSRNOT00000081772 1 1 1 80 9 14480194 14480213 GGAAAGGCAAACAGTCATCG 60 14480252 14485734 CATTCATTCCTAGATGTTGAGGC 60 Novel Rattus norvegicus 81 AABR07004733.2 ENSRNOG00000058110 ENSRNOT00000083929 1 1 1 134 1 153446207 153461777 CTTTCCTCAGAGCAATGCTG 59 153446092 153446110 TTTCTTTGCTTGCACAGCA 59 Novel Rattus norvegicus 81 AABR07004733.1 ENSRNOG00000056844 ENSRNOT00000080895 3 1 1 65 1 153456499 153457372 GGTCCAAGACCTGGAAGAG 59 153457400 153457419 TTATTTGGTAGATGGGCGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053635.2 ENSRNOG00000058578 ENSRNOT00000087002 1 1 1 85 3 117818300 117818318 TGTCCTCAAAGAGCATGGG 60 117817941 117818256 CCTTCTTGTCCTATCATTTACTGC 60 Novel Rattus norvegicus 81 AABR07066828.1 ENSRNOG00000056706 ENSRNOT00000086341 3 1 1 81 9 18085968 18098663 GTTCTGCCCTAAAGGAGCA 60 18098705 18098726 GCTCTCCAATAAAGCTCTACAC 59 Novel Rattus norvegicus 81 AABR07024814.2 ENSRNOG00000058160 ENSRNOT00000086688 2 1 1 65 16 17941336 17941355 AGAAGCAGAACATTGAATGC 57 17961899 17961917 GAGGACTTCAGGAAAGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035779.1 ENSRNOG00000055147 ENSRNOT00000090947 1 1 1 80 12 22315483 22317708 TACTTCAAGGTACAGGAGCA 58 22317751 22317769 GCAGCGAATATTGTTGTGG 58 Novel Rattus norvegicus 81 AC130741.1 ENSRNOG00000056213 ENSRNOT00000081674 3 1 1 76 16 19807083 19807215 AGGTCTTACAGAAACGGTG 57 19807025 19807043 GAAGATACTGTGGAGGAGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07035780.3 ENSRNOG00000058398 ENSRNOT00000084705 3 1 3 92 12 22357215 22357233 CATCCAGTGCCAGAATTCC 59 22357288 22357707 CACTGCAGAGTGATTTCGAC 59 Novel Rattus norvegicus 81 AABR07024955.2 ENSRNOG00000061399 ENSRNOT00000083625 2 1 1 102 16 22562844 22562862 CTCTTGCCAGCTTTCAAGG 59 22562017 22562781 GATCTCCTTCTTCTCAACTTGC 59 Novel Rattus norvegicus 81 AABR07035780.2 ENSRNOG00000058123 ENSRNOT00000082092,ENSRNOT00000092040 2 2 2 89 12 22369854 22369875 CTGGCTTTGTGTTCAATAAGGA 59 22369925 22370340 TCTTACCTGCCGGAATGAG 59 Novel Rattus norvegicus 81 AABR07066875.1 ENSRNOG00000061311 ENSRNOT00000088374 3 1 1 81 9 20728678 20730147 TTAACTTCAGGTACCGGGTG 60 20728616 20728634 CAAACAGGTGCCTTTGGAG 59 Novel Rattus norvegicus 81 AABR07035782.1 ENSRNOG00000057201 ENSRNOT00000087948 2 1 1 80 12 22386805 22386824 GTGACTTTGGTTATGGAGGA 57 22386866 22388593 CTAAGCTGGATGCTTCTAGC 58 Novel Rattus norvegicus 81 AABR07071969.1 ENSRNOG00000056322 ENSRNOT00000089770 3 1 1 100 1 178607811 178607829 TCTCAGTCCAGATGCTTCC 59 178596630 178607750 GTGGGTTTAATTGAATAGGCGA 59 Novel Rattus norvegicus 81 AABR07067034.1 ENSRNOG00000052150 ENSRNOT00000088992 2 1 1 159 9 27210685 27213024 TGGATCATCCCACATGGAC 59 27210544 27210563 GTAAATGGGTTTCCAGAGGG 58 Novel Rattus norvegicus 81 AABR07025303.1 ENSRNOG00000059212 ENSRNOT00000079403 2 1 1 81 16 32656088 32656107 CACCACATCTCAGAAAGTGG 59 32656148 32656307 CCATTAAATCTGGAACCAACAC 58 Novel Rattus norvegicus 81 AABR07053881.1 ENSRNOG00000058229 ENSRNOT00000077944 3 1 1 80 3 132172911 132172931 GCTGATGAAAGATCAACTCCC 59 132096989 132172871 TATTCGGCCATAGTGTACCTC 59 Novel Rattus norvegicus 81 AABR07035868.1 ENSRNOG00000056105 ENSRNOT00000078623 3 1 1 81 12 26242359 26246062 GTAGCTCTGAGTGTTATACTCCA 59 26246103 26246121 TCAGCTGGTCTTTGGATGG 60 Novel Rattus norvegicus 81 AC128610.1 ENSRNOG00000051795 ENSRNOT00000087917 2 1 1 80 1 185578913 185578931 AGATCCATGTCTTGTGGGC 60 185578974 185626760 CCACATTCCCTTTGTTCCAG 59 Novel Rattus norvegicus 81 AABR07025386.1 ENSRNOG00000052230 ENSRNOT00000080111 3 1 1 107 16 36297249 36297267 TCCGTTGAAGATGGGTGAG 59 36295562 36297178 GTTAGCTTCTCCGGACCTC 60 Novel Rattus norvegicus 81 AABR07005569.1 ENSRNOG00000057326 ENSRNOT00000077794 2 1 1 80 1 187973702 187974423 CTACTCTGGCCAGGTATTCC 59 187974465 187974484 GAAGAATGGTCGTTTCTGGC 60 Novel Rattus norvegicus 81 AABR07025662.1 ENSRNOG00000059162 ENSRNOT00000089914 2 1 1 81 16 44809930 44809949 AAGCATTCATGTGGAACCTC 59 44783534 44809887 GCCTTGTGTCATCAGTTCAG 59 Novel Rattus norvegicus 81 AABR07036024.1 ENSRNOG00000052944 ENSRNOT00000081483 3 1 1 81 12 30946799 30948808 GACGGGAGGTCTTAAACCC 60 30948853 30948871 GGAGAGCAGGCAGATATCG 60 Novel Rattus norvegicus 81 AABR07067388.2 ENSRNOG00000061446 ENSRNOT00000083294 2 1 1 85 9 42268962 42268980 AGAAAGGAGATGCAGAGCA 59 42216499 42268913 AGTCATCATGGGCTCACTG 60 Novel Rattus norvegicus 81 AC111428.1 ENSRNOG00000055430 ENSRNOT00000082569 3 1 1 82 3 148057942 148061792 GAACTACAACCTCTAAACACAGG 59 148061832 148061852 GTAGCAAATTTCCCAGGTCAG 59 Novel Rattus norvegicus 81 AABR07026002.3 ENSRNOG00000056149 ENSRNOT00000088102 1 1 1 80 16 58707728 58709424 CAGAACCTTCAAATCTGAGTGTC 60 58707670 58707688 CTCCATGGCAGACGTAGAG 60 Novel Rattus norvegicus 81 AABR07036318.2 ENSRNOG00000056008 ENSRNOT00000086718 1 1 1 96 12 38117928 38117946 TATGAGCAAGAACGAGCGA 59 38118004 38120632 AGTATTGTGCAACTGTGACTC 59 Novel Rattus norvegicus 81 AABR07036376.1 ENSRNOG00000060770 ENSRNOT00000087812 2 1 1 65 12 40971021 40971039 AATTAAGGCTGCAGCAAGC 60 40978288 40978306 GATAAGTGAGCTTCCCGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07067501.1 ENSRNOG00000057874 ENSRNOT00000089189 1 1 1 80 9 49510111 49510715 AAGCTGGTTTGAGTCTCAG 57 49510759 49510777 CCAATCTGTGAGACTCTGC 58 Novel Rattus norvegicus 81 AC128986.1 ENSRNOG00000061174 ENSRNOT00000079892 2 1 1 60 3 156726025 156726044 GTTTCTGTTCCACAGGAGAG 58 156723130 156723148 TCTAGAAGGCACAGTAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026125.1 ENSRNOG00000053207 ENSRNOT00000082833 1 1 1 89 16 64984117 64984135 GACTTGGATAGGACTGGCC 60 64982386 64984064 CAAAGAAGCCACCTTTGCA 59 Novel Rattus norvegicus 81 AABR07067749.1 ENSRNOG00000051735 ENSRNOT00000088574 3 1 1 106 9 60881860 60883673 TTCATGATGATCAGGTCAGGA 59 60881774 60881792 GAAAGTGTTGCAGGAAGCT 59 Novel Rattus norvegicus 81 AABR07067775.2 ENSRNOG00000058413 ENSRNOT00000078208 3 1 1 81 9 63362280 63364517 CACTTATCACTATGAAGTGCAC 57 63362220 63362238 ATGCTCTGCTTCATGTTCC 58 Novel Rattus norvegicus 81 AABR07036507.1 ENSRNOG00000056419 ENSRNOT00000088173 1 1 1 86 12 45482695 45482713 CGAAAGCCAAGATGCAAGG 60 45482758 45487386 CTCTGATCCGCCTAATTAATTCTG 60 Novel Rattus norvegicus 81 AABR07067871.1 ENSRNOG00000057686 ENSRNOT00000083802 3 1 1 112 9 69695915 69695933 ACACTTCAGGCATCTGACC 60 69696008 69697278 CCATTCTTGTTACCTGCTGC 60 Novel Rattus norvegicus 81 AC094001.2 ENSRNOG00000054222 ENSRNOT00000088592 1 1 1 60 1 216936885 216936903 AGGAGATTTCTGCCCTGTG 59 216934548 216934567 GAGTTGAGGACTCTTTGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054680.1 ENSRNOG00000058758 ENSRNOT00000087486 1 1 1 60 3 166823154 166823172 GACTGTGAACCTGTCTGTC 58 166823194 166823214 ACTCCACTCGTATGAATGACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC095937.1 ENSRNOG00000060364 ENSRNOT00000081566 2 1 1 80 1 217931498 217931516 TTTCCTGTCTGGATGTGCA 59 217925638 217931456 TCCTAGGTGTCATGAATCCAC 59 Novel Rattus norvegicus 81 AABR07037104.1 ENSRNOG00000060484 ENSRNOT00000084383 2 1 1 81 X 12882423 12882444 GGATTGAAGATATCACCAACTG 57 12882486 12885188 AACCAGTTCCATGGATGTC 57 Novel Rattus norvegicus 81 AABR07054822.1 ENSRNOG00000052166 ENSRNOT00000087924 2 1 1 81 3 170773587 170773605 ACGCTTCTCCTCGTATCTG 59 170772523 170773542 ATCCTGCATCCTCATCCTG 59 Novel Rattus norvegicus 81 AABR07068053.1 ENSRNOG00000058100 ENSRNOT00000078057 2 1 1 84 9 80068360 80068379 CATCCTTTGGACTCCATCTG 58 80068424 80068784 CAGTCTACAGATGAGTCTAGC 57 Novel Rattus norvegicus 81 AABR07022113.1 ENSRNOG00000053904 ENSRNOT00000083559 1 1 1 80 13 108601146 108601168 GCTCAACTCTAGAGTAATACTCC 58 108594377 108601106 TTCAACCTTGCTTGTTCCA 58 Novel Rattus norvegicus 81 AABR07022202.1 ENSRNOG00000054878 ENSRNOT00000082516 1 1 1 164 13 112760483 112761227 TCACAGAAGATGGTGAAATGG 58 112761352 112761371 GCAGGAAACAATTAAGTGGG 57 Novel Rattus norvegicus 81 AABR07037607.1 ENSRNOG00000058086 ENSRNOT00000083399 1 1 1 80 X 25122059 25249902 GGTCAAACGTAACAAGAAATGG 59 25249942 25249961 CTGTAGTACGGATGGGTCTC 59 Novel Rattus norvegicus 81 AABR07026539.2 ENSRNOG00000060874 ENSRNOT00000077531 1 1 1 77 16 82430271 82430289 TTTACACTCCGCTCTCCAG 59 82430425 82430443 ATTAGCAGAGGCATGGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07055812.1 ENSRNOG00000055912 ENSRNOT00000084358 2 1 1 130 7 10265082 10265100 TTTGTACAATCGAGGGACC 57 10266038 10266059 CTTGTTGATCTCATCAGTAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026557.2 ENSRNOG00000061488 ENSRNOT00000081647 2 1 1 134 16 83203352 83203370 TGTGCCACAGTTTGTTCTG 59 83198831 83203255 CTTGGAGAGGAGTTCTTTGC 59 Novel Rattus norvegicus 81 AABR07006654.1 ENSRNOG00000051821 ENSRNOT00000088213 1 1 2 81 1 244421283 244436944 CTTCCAAGAAGTGCTGGGA 60 244421220 244421239 AGCTTACCAGTTAGAGTGCA 59 Novel Rattus norvegicus 81 AABR07056156.1 ENSRNOG00000061013 ENSRNOT00000081988 3 1 1 131 7 20629387 20629405 ATGAGTGTAGGAGAGCCCA 60 20629497 20713760 CAGACTGATTCTTGATGTAGCC 59 Novel Rattus norvegicus 81 AABR07068590.1 ENSRNOG00000057630 ENSRNOT00000077292 1 1 1 85 9 110399611 110401436 GATGACATTGGAGTATTTCTAGGG 59 110399549 110399567 ATTGAACTCTGGACCTCCG 59 Novel Rattus norvegicus 81 AABR07026971.1 ENSRNOG00000054646 ENSRNOT00000081789 1 1 1 96 17 7875652 7875670 GAATTGGAAGCAGACAGGT 58 7875225 7875243 AATGGAACTGGGCTAGCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056423.1 ENSRNOG00000057870 ENSRNOT00000085739 3 1 1 92 7 24715176 24715194 CTACCAGTCTCTTGGGACC 59 24707470 24707490 CCTTGATACTGGATCACTCGA 59 Novel DesignNoJunction Rattus norvegicus 81 AC130862.4 ENSRNOG00000059363 ENSRNOT00000088098 1 1 1 85 X 105536537 105536555 TATCTGTGGATCTCGCTCC 58 105536601 105537311 CTTCTTGCAGATTTGATTCTGG 58 Novel Rattus norvegicus 81 AABR07026975.1 ENSRNOG00000057274 ENSRNOT00000081536 1 1 1 100 17 8106197 8106218 GGAATTATCACCAGAAATGTCC 57 8106276 8118119 GGATCTGTCTTTACTAAACCGT 58 Novel Rattus norvegicus 81 AABR07056442.1 ENSRNOG00000060955 ENSRNOT00000077424 3 1 1 82 7 25763391 25764002 ATTCCAAGGCTGTAGGTGG 59 25763327 25763347 AACGTGCAGGATAGAGAAGAG 60 Novel Rattus norvegicus 81 AC139608.1 ENSRNOG00000054147 ENSRNOT00000078596 3 1 1 82 17 9470366 9470385 CTCTCAAGCCTTCAGATCAC 58 9470430 9471108 GCAACACATTGTTACGCAC 59 Novel Rattus norvegicus 81 AC094241.1 ENSRNOG00000051982 ENSRNOT00000085823 2 1 1 80 1 257041633 257043999 GAAGTCATTCTGAGGCAGGA 60 257041572 257041590 ATTCCTGCTTCTCAGCTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07042654.1 ENSRNOG00000057797 ENSRNOT00000085554 1 1 1 95 19 1714573 1714591 GCTGGTATTCATCCAACCT 57 1714647 1715265 CAATTCTGCTTATGGAAGTTGG 58 Novel Rattus norvegicus 81 AABR07068712.2 ENSRNOG00000058356 ENSRNOT00000083914 1 1 1 80 9 116290999 116291612 AGTAGTAGCAAGAGAACTCTTACTG 60 116290943 116290962 GAAGTCCTAAGAGCAGAGCA 59 Novel Rattus norvegicus 81 AABR07042690.1 ENSRNOG00000061663 ENSRNOT00000080904 1 1 1 70 19 3734258 3742489 GAATGAATGGCTTCAGAAGACC 60 3734209 3734229 ACATGCCAGTATTTAGAAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07068810.1 ENSRNOG00000059433 ENSRNOT00000078089 1 1 1 80 9 120345113 120345134 GATTACTACTGGATACCAAGGC 58 120345173 120349515 TTCTGCTGTTTCCTACATCAC 58 Novel Rattus norvegicus 81 AABR07027029.1 ENSRNOG00000053786 ENSRNOT00000087925 2 1 1 67 17 11654751 11654774 CTTCTCCGTGACTTAAGAATAGTC 59 11651352 11651370 AAATCATGGGCTAGGCTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AC096317.1 ENSRNOG00000055885 ENSRNOT00000077734 3 1 1 168 1 261923688 261923708 AGTGTCAAGACTTCAGACCAG 60 261922751 261923558 GATGAGTCCCTTTCGAGCA 60 Novel Rattus norvegicus 81 AABR07027080.1 ENSRNOG00000060331 ENSRNOT00000081655 3 1 1 83 17 13413614 13413633 TGGTTCCTTCATTGTGACCT 59 13413677 13426351 AGAGGCAGCCTATATTCATGG 60 Novel Rattus norvegicus 81 AABR07056637.1 ENSRNOG00000056797 ENSRNOT00000079620 1 1 1 62 7 34176287 34177890 GAGGCATCGTCTAACAAGG 58 34177916 34177934 GTTTCTGCCAAGTGCTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07006889.1 ENSRNOG00000053185 ENSRNOT00000084817 1 1 1 80 1 262929401 262929419 ACTTGTATGCTCCGAAGGA 58 262929462 262931411 TAAGTTGCTCAGCTTCTTCC 58 Novel Rattus norvegicus 81 AABR07069008.1 ENSRNOG00000052530 ENSRNOT00000082366 1 1 1 80 8 5177644 5178382 CCTCAAGCATGTACTGCAC 59 5177582 5177603 GGATGTACAAACTGGTAATCCT 58 Novel Rattus norvegicus 81 AC106681.1 ENSRNOG00000055220 ENSRNOT00000089176 2 1 1 70 19 10266731 10266749 CCTACTACCTCTGCCTCCA 60 10261439 10261457 TTGTAGAACCGGGTCTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056705.1 ENSRNOG00000060894 ENSRNOT00000084659 1 1 1 80 7 37404491 37406715 ATCTCGCTTTGTGGTTCCT 59 37406753 37406777 CAATACCAAGATCTTCAGATGATCC 60 Novel Rattus norvegicus 81 AC096326.1 ENSRNOG00000060966 ENSRNOT00000086048 2 1 1 97 1 265421210 265421228 CTCTACCCTCAAGTGTCCT 58 265429562 265429580 AAGTTGTCCTTGGTCTCTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07069218.1 ENSRNOG00000052076 ENSRNOT00000081372 2 1 1 61 8 12794660 12822959 AATCACGGTCATCACAAGC 59 12794617 12794640 GTTGATACAGAGAATCCAAATGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056802.1 ENSRNOG00000060920 ENSRNOT00000080263 2 1 1 82 7 41798840 41798858 GGTCGAAGCGTCATATCAG 58 41764200 41798796 AGAGAAGTTACCTCCACAGAC 59 Novel Rattus norvegicus 81 AABR07043001.2 ENSRNOG00000060505 ENSRNOT00000080200 1 1 1 84 19 16168706 16168725 AACATGAAACAAGTGAGCCT 58 16168168 16168660 GTCTGATGTGTTCCTCTGTG 58 Novel Rattus norvegicus 81 AABR07006904.1 ENSRNOG00000055137 ENSRNOT00000078951 2 1 1 80 1 270475861 270478941 TCCTCATTCTCTGGCTTCC 59 270475799 270475819 TTCCTCCAGGAAAGGAAAGAC 60 Novel Rattus norvegicus 81 AABR07027309.1 ENSRNOG00000060680 ENSRNOT00000082678 1 1 1 93 17 23795803 23803933 GACAGGATCTAGATCCTGACTG 59 23803987 23804005 AGCAGGAGTTATCTGCTGG 59 Novel Rattus norvegicus 81 AABR07069473.1 ENSRNOG00000056108 ENSRNOT00000083919,ENSRNOT00000078748 2 2 3 87 8 23524876 23524900 GGCTGAAGATTTACTTCTAGAAGTG 60 23524945 23534892 GAGCATCTCAGAGCCTGAG 60 Novel Rattus norvegicus 81 AABR07057171.1 ENSRNOG00000061104 ENSRNOT00000078560 2 1 1 96 7 58622799 58622817 GTGTAACCTGTTCGCTACG 59 58622877 58623773 GACAGACAGACCACTCCTG 59 Novel Rattus norvegicus 81 AABR07069490.2 ENSRNOG00000058106 ENSRNOT00000082246 2 1 1 80 8 24108469 24114785 CAGATCCTAAGTGGAATTCAGG 58 24114825 24114844 CTGTATTTATGGGAGCTGCA 58 Novel Rattus norvegicus 81 AABR07006957.1 ENSRNOG00000061600 ENSRNOT00000089277 2 1 1 80 1 273059545 273059563 TTTCTCAGACAGGACTGGG 59 273059607 273060295 TCCTCTCCAAAGTGTGCTC 59 Novel Rattus norvegicus 81 AC115255.1 ENSRNOG00000052176 ENSRNOT00000084663 3 1 1 80 1 274135150 274135168 AACTAAACCACAAGGCCAG 58 274133638 274135107 CTAGGCTCTAAAGCATTCCG 58 Novel Rattus norvegicus 81 AABR07043445.1 ENSRNOG00000061812 ENSRNOT00000085366 1 1 1 81 19 28558478 28563264 CAGCATCATCAGGTCTCAG 58 28563306 28563327 AGCAACTTATTCTTCAGGAGTC 58 Novel Rattus norvegicus 81 AABR07043525.1 ENSRNOG00000055482 ENSRNOT00000088267 3 1 1 82 19 29169403 29169423 GTTTCTCGATCTTGGAGAGGA 59 29137185 29169359 TGATGTTGAATGGGCACTG 59 Novel Rattus norvegicus 81 AABR07043601.4 ENSRNOG00000058833 ENSRNOT00000090322 2 1 1 60 19 30775793 30775813 CTCAGATCCAAGAGAAACGAG 58 30776725 30776743 CTGAAGATAGGAGCACGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069791.3 ENSRNOG00000056347 ENSRNOT00000080549 3 1 1 60 8 40037646 40037666 CTTCAGTCCTCAAGTTGTCTC 58 40037362 40037381 TCAAGACAGGGTTGGAAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027581.1 ENSRNOG00000057433 ENSRNOT00000084015 1 1 2 80 17 37687587 37689159 GAAGTAGAGGGAGAAGGTGTC 59 37689196 37689219 CATTTCAGTAGGAAGTACTTCTGC 60 Novel Rattus norvegicus 81 AABR07057586.1 ENSRNOG00000057489 ENSRNOT00000091480 1 1 1 81 7 79178451 79179276 AAACGTCCACGAAAGAGAC 58 79179320 79179339 TGCTAGTCATGGAATAGCCA 59 Novel Rattus norvegicus 81 AABR07028908.2 ENSRNOG00000055317 ENSRNOT00000078959,ENSRNOT00000081689 2 2 2 81 10 107629 109350 TCGACAAGACAATCTGCCA 59 109395 109413 TTCAAATCCTGCACCAAGG 58 Novel Rattus norvegicus 81 AABR07043701.2 ENSRNOG00000058049 ENSRNOT00000088764 2 1 1 77 19 36173641 36174952 GATCCATGAACAAGAGCCC 58 36174993 36175011 ACATGACCTCTTTCTCCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07069987.1 ENSRNOG00000057045 ENSRNOT00000086935 1 1 1 79 8 44367505 44367526 CCAGCAAATCTTAATCCCAGTC 60 44366806 44366824 TACTCAGAGGAGCCTGGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07028917.1 ENSRNOG00000053864 ENSRNOT00000085385,ENSRNOT00000088497 1 2 2 80 10 196628 197044 CAGTGGATTCAGGAACGAG 58 196566 196585 CCAGAAGATGTCAGTCATCC 58 Novel Rattus norvegicus 81 AABR07073391.1 ENSRNOG00000058361 ENSRNOT00000078268 3 1 1 106 8 46501110 46502492 TCAGCATCGAAGATAGACAC 57 46503408 46503427 CAAGATCCAAGTACAGGGAC 58 Novel Rattus norvegicus 81 AABR07070069.1 ENSRNOG00000053546 ENSRNOT00000089282 2 1 1 80 8 47557188 47557206 AATGGCAGCTTCTTTCCTC 58 47557249 47560346 CAATGTGTCTTCAGAGGCTC 59 Novel Rattus norvegicus 81 AC129395.2 ENSRNOG00000057329 ENSRNOT00000085015 1 1 1 81 10 6889379 6889397 CTCAGAAGCCAGGAGAGTG 60 6889442 6889969 ACAGGAGCACTGAAATCCA 59 Novel Rattus norvegicus 81 AABR07043748.2 ENSRNOG00000055745 ENSRNOT00000092177,ENSRNOT00000085034 2 2 2 80 19 38365659 38365974 TCATCGTTCTGAATGTTACAGC 59 38365600 38365621 CCAGTAGTTCATTCCTCAAGGT 60 Novel Rattus norvegicus 81 AC098959.1 ENSRNOG00000054105 ENSRNOT00000089322 1 1 1 84 10 14804466 14804484 CTGTTCAACTGCTTCTCGC 60 14802874 14804418 AGCCAGCTGGGAATTAGTG 60 Novel Rattus norvegicus 81 AABR07070099.1 ENSRNOG00000058295 ENSRNOT00000082176 1 1 1 80 8 52235309 52235327 TGTCACCCTGTCATATGCC 60 52233182 52235269 CTCTTAAGATGCTCTAGACCCTC 60 Novel Rattus norvegicus 81 AABR07029220.1 ENSRNOG00000053667 ENSRNOT00000084188 2 1 1 60 10 16192353 16192371 ACCTGCTGGTTCTATGCTC 60 16191658 16191677 CAGTAAGTGTCTTCACCAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07041247.3 ENSRNOG00000052259 ENSRNOT00000077131 1 1 1 86 X 124111983 124112002 TGGAGACTTACTCAGAACCC 59 124111397 124111934 AGGAAAGTACAGTCTGGGC 59 Novel Rattus norvegicus 81 AABR07007715.1 ENSRNOG00000061142 ENSRNOT00000081057 1 1 1 80 2 25331411 25331430 TATAGCAGCAGATGGGAAGG 59 25331473 25343913 TTGTGAGCATCTCAACCGA 59 Novel Rattus norvegicus 81 AABR07070161.4 ENSRNOG00000055224 ENSRNOT00000080908 2 1 1 82 8 55530131 55530264 TCTTGCATATCCAGCTTAAGG 58 55530069 55530090 GGTGACTGTTCCATAGAATCTC 58 Novel Rattus norvegicus 81 AABR07007717.2 ENSRNOG00000057200 ENSRNOT00000089946 3 1 1 80 2 25547332 25547353 ATCAGAGAAACACTACTGAGGT 59 25546606 25547292 TTGTGCAGTTCAACTGTAGC 59 Novel Rattus norvegicus 81 AABR07041724.2 ENSRNOG00000061916 ENSRNOT00000080023 1 1 1 80 X 137709493 137709513 TCTTTAAAGCACAGAACTGCC 59 137706350 137709453 CTCTGAAGACATTCGACACTG 59 Novel Rattus norvegicus 81 AABR07058360.2 ENSRNOG00000053271 ENSRNOT00000083791 2 1 1 176 7 111697217 111697235 ACCACCAATGCCTTAACAG 58 111675347 111697078 GAGCTTTAGGAGACCATCTC 57 Novel Rattus norvegicus 81 AC119356.1 ENSRNOG00000058744 ENSRNOT00000086947 1 1 1 80 2 28346845 28348252 TCAGTTGATCTCAGGTTTCAG 58 28348293 28348312 CACAGAGATGCATACTGGTG 59 Novel Rattus norvegicus 81 AABR07042440.2 ENSRNOG00000057466 ENSRNOT00000080296 2 1 1 80 X 155796126 155796145 ACAGGCAGCTCAAGTAAGAG 60 155794458 155796083 TCCTCAACATTTGGCATGC 59 Novel Rattus norvegicus 81 AABR07007799.1 ENSRNOG00000061406 ENSRNOT00000086415 1 1 2 80 2 28841478 28841498 AGGAATGACAGTGAACAACTC 58 28836931 28841438 TGCAATGAAGTCCTTCAAGAC 59 Novel Rattus norvegicus 81 AC112534.1 ENSRNOG00000054883 ENSRNOT00000086970 2 1 1 72 7 126382983 126383583 TCACTCCAGAGACAAAGCC 59 126383619 126383637 TCTCATTCTGCTCAGCTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058985.1 ENSRNOG00000053300 ENSRNOT00000088476 1 1 1 80 4 84367 86126 GGCTTTGTCAATGACTCTCAG 59 86168 86186 CTTCTGCTGCATCTGAAGC 59 Novel Rattus norvegicus 81 AABR07028113.1 ENSRNOG00000060370 ENSRNOT00000082440 1 1 1 80 17 57472557 57472780 GAAGACTCAGTTTCACTGCC 59 57472820 57472841 CCTCACTTCTACAGATGAAGAC 58 Novel Rattus norvegicus 81 AABR07028186.1 ENSRNOG00000053465 ENSRNOT00000089697 1 1 1 93 17 59365322 59365508 AAGAATGGGTACAGGCGTC 60 59365563 59365583 ATCTACGTAAGTTCACTGCCA 59 Novel Rattus norvegicus 81 AABR07044559.1 ENSRNOG00000056023 ENSRNOT00000084010 2 1 1 83 20 10595763 10595781 CTCATTGATGGGCTGAGTG 58 10595826 10596548 GCCTACGAGTCTGTTAATCTG 58 Novel Rattus norvegicus 81 AABR07007986.1 ENSRNOG00000053187 ENSRNOT00000078915 3 1 1 81 2 37222295 37223635 CATGTTGCATCACATTCACAC 59 37223675 37223696 GTTGTCTCTGCTTGTTTATACG 58 Novel Rattus norvegicus 81 AABR07028258.1 ENSRNOG00000058781 ENSRNOT00000091239 2 1 1 85 17 62657993 62658011 AGTTTAGAACCCAGTCACG 57 62657536 62657947 CAGAAAGTCATGTTTCGATCTC 58 Novel Rattus norvegicus 81 AABR07059372.1 ENSRNOG00000060864 ENSRNOT00000082294 3 1 2 81 4 16827535 16827553 TTTGAGCCTTCACTGTCTG 58 16827598 16828002 AGATATGTGGTACAGCTGC 57 Novel Rattus norvegicus 81 AABR07059399.1 ENSRNOG00000054238 ENSRNOT00000085432 2 1 1 72 4 17666259 17668580 AAATGGAAAGACCTATGAGGG 58 17668613 17668632 AGCGTACACGTAGAGATCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044671.1 ENSRNOG00000061116 ENSRNOT00000081523 3 1 1 92 20 16641974 16652533 TGAGCATGTATACGACGCA 59 16641900 16641921 CTGAACTGCTTCTTCATTACCA 59 Novel Rattus norvegicus 81 AABR07008014.1 ENSRNOG00000053767 ENSRNOT00000082443 3 1 1 63 2 38913443 38913461 CAGGAGTTAAGAGGCTCAC 57 38909657 38909677 TTAAAGAGACAACCTGCTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07070774.1 ENSRNOG00000055032 ENSRNOT00000088991 2 1 1 74 8 84044435 84044453 GAATGCAGCTTCACATCTG 57 84002084 84002104 GTTGTCACTGTTATCACTGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07059641.1 ENSRNOG00000052257 ENSRNOT00000084091 1 1 1 80 4 29623277 29624098 ATGTCAAAGATCAGGGCTC 57 29623215 29623233 TCTACCACATCTCCCTGAG 58 Novel Rattus norvegicus 81 AABR07059807.1 ENSRNOG00000054988 ENSRNOT00000078563 3 1 1 81 4 36726753 36726774 AGGAATATCACCTCTTCACGTC 60 36726815 36728954 GGAATTCACTGGTCTTGGGA 60 Novel Rattus norvegicus 81 AABR07028669.1 ENSRNOG00000061219 ENSRNOT00000083008 2 1 1 60 17 79978394 79978413 AAGTGGATGGAACAGAGTGG 60 79964682 79978373 AATCTTTGCCGTTTCGAAGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07059875.2 ENSRNOG00000054496 ENSRNOT00000091342 3 1 1 83 4 39644735 39644754 AGAAACAGGGAATGTGTTGC 59 39644588 39644689 GTGACAGATGGCAGTTTGG 59 Novel Rattus norvegicus 81 AABR07071385.1 ENSRNOG00000056504 ENSRNOT00000077851 1 1 1 63 8 112996286 112996305 TCAGTATCATCCCTGCTCTC 58 112993116 112993134 CTGTATGGAACCAAGGGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07060222.1 ENSRNOG00000051677 ENSRNOT00000087972 3 1 1 88 4 63078380 63083916 TGGCTGAGATAAATGTGGAC 58 63078311 63078332 CTTTATAAGAGTTGCCATGGTC 57 Novel Rattus norvegicus 81 AABR07071395.1 ENSRNOG00000052395 ENSRNOT00000082061 2 1 2 66 8 114039216 114039234 AGAGTGCAGTTTCGATGGA 59 114038312 114038333 AGGGAGGAAGAAATGATTTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07071487.1 ENSRNOG00000053472 ENSRNOT00000083444,ENSRNOT00000082424 2 2 2 119 8 118463907 118463925 GATGTCCTTTCCGACTGTG 58 118464870 118464888 CAGAATTGGTGTGGCTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008462.1 ENSRNOG00000060305 ENSRNOT00000081572 2 1 3 80 2 59850555 59855175 GAACACCAGCTCAGAATTCC 59 59855218 59855236 TGCTTTCACCTTTGGTCTC 58 Novel Rattus norvegicus 81 AABR07073453.1 ENSRNOG00000051701 ENSRNOT00000079538 2 1 1 100 8 119372025 119376810 CTCAGACAGGACCGAAGAG 59 119376874 119376892 TGAGAATGCTGTGACCCTC 59 Novel Rattus norvegicus 81 AABR07045399.2 ENSRNOG00000054538 ENSRNOT00000082658 1 1 1 86 20 46164634 46166344 CTGTGGAGGTTCTTCAGCA 60 46166394 46166412 CTGTGGAAGTCCTCTGTGG 60 Novel Rattus norvegicus 81 AABR07008491.1 ENSRNOG00000059296 ENSRNOT00000082976 3 1 1 83 2 61496064 61507496 AGAAGACTAAAGGGTTCATGTG 58 61507538 61507558 TGATAAGGTAAATGGTAGCCG 58 Novel Rattus norvegicus 81 AABR07071549.1 ENSRNOG00000052055 ENSRNOT00000088777 2 1 1 89 8 121583529 121583548 ATTCCACAGGACGAGAAGAG 59 121583600 121586497 AGATTCTCTGCACCTACGG 59 Novel Rattus norvegicus 81 AABR07043825.1 ENSRNOG00000060265 ENSRNOT00000082679 1 1 1 95 19 42516281 42516301 AATCTCTTCCTCAGGTTTGTG 58 42456190 42516224 CTTCTTCAGGGCGAAAGTC 59 Novel Rattus norvegicus 81 AABR07043825.1 ENSRNOG00000060265 ENSRNOT00000082679 3 1 1 98 19 42456199 42516233 AACTTCAGTGACTTTCGCC 58 42456119 42456137 GTAGCATTACTTCCACGGG 58 Novel Rattus norvegicus 81 AABR07060560.2 ENSRNOG00000053029 ENSRNOT00000091322 1 1 1 82 4 80484385 80486382 AACTAATCGGGAGGAGCTG 59 80486428 80486446 TTTCCCATCACAGAGGAGC 59 Novel Rattus norvegicus 81 AABR07008788.1 ENSRNOG00000057307 ENSRNOT00000083980 3 1 1 153 2 73912287 73956522 AAATGTTGTTCAGGACTCAGC 59 73956635 73956655 GCCAACAACTTGACATTTGAG 59 Novel Rattus norvegicus 81 AABR07043883.1 ENSRNOG00000054393 ENSRNOT00000085347 2 1 1 80 19 45850155 45850563 GAAATAAGAAACGGAAGCACC 58 45850095 45850114 TACAACATCACAGAGGAGCT 59 Novel Rattus norvegicus 81 AABR07071622.1 ENSRNOG00000059167 ENSRNOT00000080854 2 1 1 81 8 124650275 124658987 ATTACATGGAGAAGCTGTGAC 58 124650214 124650236 CTTCTGGTCTTCCTTACTTATCC 58 Novel Rattus norvegicus 81 AABR07071659.1 ENSRNOG00000051659 ENSRNOT00000078088 2 1 1 60 8 126171970 126176405 GACCAGCGATAGATTGGTC 58 126171928 126171949 GCTCCTATTTAATTCGCTCCTC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07044001.2 ENSRNOG00000055320 ENSRNOT00000087103 2 1 1 84 19 52058110 52058128 GAAGACAGCTGGTTCTCAC 58 52058174 52059578 ATCTTTCTGACCCTTTGTCAG 58 Novel Rattus norvegicus 81 AABR07058722.1 ENSRNOG00000058598 ENSRNOT00000077173 3 1 2 81 7 134986626 134988451 GTCAATTTAGACTGAGATCTCTTCC 59 134988490 134988508 GAACTGGATTGGCTTGGTG 59 Novel Rattus norvegicus 81 AABR07058758.1 ENSRNOG00000054356 ENSRNOT00000091363 2 1 1 80 7 136490759 136490779 GAGTTAGACGTATTGGATGGC 59 136462238 136490720 GTAAACTCCATGGCCTTAAGTG 59 Novel Rattus norvegicus 81 AABR07044079.1 ENSRNOG00000051742 ENSRNOT00000088854 2 1 1 82 19 56403815 56404127 TGATTAAAGATTGGGTGGCCT 60 56403753 56403771 AATCAGGAAGGCAGTGACC 60 Novel Rattus norvegicus 81 AABR07008991.1 ENSRNOG00000057131 ENSRNOT00000079647 2 1 1 82 2 82506470 82507300 GAGATCAGAATATTCTTGCAGAGC 60 82506411 82506434 CGTACGTAGACTTCAACTTAAAGG 60 Novel Rattus norvegicus 81 AABR07044081.1 ENSRNOG00000061594 ENSRNOT00000088543 2 1 1 80 19 56541202 56541458 AATATGGATCAGCATGGAGGA 59 56541500 56541518 GACGCTCTCAATTCTGTGG 59 Novel Rattus norvegicus 81 AABR07058786.1 ENSRNOG00000054027 ENSRNOT00000077802 1 1 1 99 7 137482048 137482066 TCTCCTGGCATCTTTAGGT 58 137480351 137481985 ATAAATGCACCTCCAAGGG 58 Novel Rattus norvegicus 81 AABR07009002.1 ENSRNOG00000059117 ENSRNOT00000087644 1 1 1 72 2 82771684 82772676 TTGTTGTGACACATGAGGC 59 82772711 82772730 GAATTCTTACACTGGAGGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07009028.1 ENSRNOG00000051925 ENSRNOT00000080377 3 1 1 61 2 84160023 84160042 GATGCTGACACCAACTTGTC 60 84127615 84160000 TAGTGTCTTCGCCTCAACTG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07044148.1 ENSRNOG00000061610 ENSRNOT00000083636 1 1 1 85 19 59656399 59660409 CTCCTAAGGACAAGAACTTTCC 59 59660455 59660473 CTTTACCAAAGGTGTCGGG 59 Novel Rattus norvegicus 81 AABR07072667.1 ENSRNOG00000060506 ENSRNOT00000077394 1 1 1 80 19 59690891 59700239 CTTCTTCTAGAAACGGACAGAC 59 59690832 59690850 AACACGGGTGATTTCACTG 58 Novel Rattus norvegicus 81 AABR07072667.1 ENSRNOG00000060506 ENSRNOT00000077394 2 1 1 80 19 59690891 59700238 TTCTTCTAGAAACGGACAGAC 58 59690831 59690850 TAACACGGGTGATTTCACTG 58 Novel Rattus norvegicus 81 AABR07044173.1 ENSRNOG00000055152 ENSRNOT00000077683 1 1 1 80 19 61511738 61511756 ATGCTGGGATGTATCCTGG 59 61511800 61536444 TCTAGGCTTCTGTTCCCTG 58 Novel Rattus norvegicus 81 AABR07058955.1 ENSRNOG00000053626 ENSRNOT00000087494 1 1 1 80 7 145370517 145370536 TTCAAAGGAGTCAAGTTCGC 59 145370578 145371381 CAGGAACTCCTTCAAGTCAG 58 Novel Rattus norvegicus 81 AABR07009600.1 ENSRNOG00000056127 ENSRNOT00000086516 2 1 1 98 2 105476142 105476163 TCCTGCTTCTTAAATGAACCCT 60 105475789 105476089 GACAGCATATCCTTATTGTATAGCC 59 Novel Rattus norvegicus 81 AABR07009634.2 ENSRNOG00000052903 ENSRNOT00000091882 2 1 1 101 2 106593242 106593263 GGAATTGCATAACTACAAGGAC 58 106660534 106660555 CTCCACTTGACAAGATGTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AC116283.1 ENSRNOG00000059157 ENSRNOT00000087200 2 1 1 81 2 123454837 123464467 GGCAAACTGAACCAAAGCA 60 123454774 123454794 CTTTCAATGTAGCATGAGCCT 59 Novel Rattus norvegicus 81 AABR07010330.2 ENSRNOG00000060192 ENSRNOT00000078133 2 1 1 81 2 132348346 132352881 GGAAGGTCCTACAGATTCAG 57 132348284 132348302 TTGTGGTGGATTTATGGGC 58 Novel Rattus norvegicus 81 AABR07010587.1 ENSRNOG00000054842 ENSRNOT00000078574 3 1 1 80 2 141637402 141637421 ACTGACATCACACTAGTGCT 59 141637464 141639970 CTTCTTGGCTGTCTTCTCC 58 Novel Rattus norvegicus 81 AABR07010592.1 ENSRNOG00000053561 ENSRNOT00000083742 2 1 1 80 2 142167881 142167900 ACGCTAACATTGTTCTGTGG 59 142167943 142168058 ATCTGCCTTTCTGCTCTGG 60 Novel Rattus norvegicus 81 AABR07011434.1 ENSRNOG00000058603 ENSRNOT00000083999 1 1 1 63 2 162021747 162022789 TTTCCTTCTTACAGCAGCA 57 162022816 162022834 ATCAGGCTTCATACTTGCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07011545.1 ENSRNOG00000049459 ENSRNOT00000073022 3 1 1 85 2 163341515 163341533 TTCCGAATGGAGTCCTTGG 59 163321983 163341472 CTACGTCTATAATATTTCCAGGCAC 59 Novel Rattus norvegicus 81 AABR07012053.2 ENSRNOG00000053765 ENSRNOT00000090222 3 1 1 121 2 184123024 184123045 ATTGACAGTGGTACCTTATGTG 58 184111943 184121818 AATCCCATTTCCCTTCTGC 58 Novel Rattus norvegicus 81 AC098750.2 ENSRNOG00000054024 ENSRNOT00000085471 2 1 1 99 2 188597364 188597382 CCTAATCAAACACCTGCCC 59 188596447 188596465 TCTGTAGGCTTTGTGGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012711.1 ENSRNOG00000054483 ENSRNOT00000084047 2 1 1 81 2 203049464 203049488 AGAGGAGTTTCTACTGAAGTATCAC 60 203049527 203049970 TAGAGGCTCAGCTTTGTCC 59 Novel Rattus norvegicus 81 AABR07014306.2 ENSRNOG00000057919 ENSRNOT00000090859 1 1 1 109 14 8895754 8895772 TATGAGATGGACCTCGGTG 58 8894487 8895681 TTCACCATCCAGTGAGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014306.1 ENSRNOG00000051571 ENSRNOT00000084014 1 1 1 80 14 8903634 8912491 CCATTCGAGGATCTTCAACG 59 8912533 8912552 GACATTGTGCTTTGTAAGCC 58 Novel Rattus norvegicus 81 AABR07013304.1 ENSRNOG00000055380 ENSRNOT00000077485 3 1 1 226 2 232650763 232650782 CAGGAACAAAGTTCCCACAG 59 232637260 232648327 CTCCTTTCTTGCAGTCCTG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07013718.1 ENSRNOG00000054185 ENSRNOT00000084675 1 1 1 80 2 252869515 252872353 TTCTGACTCAAGCGGTCTC 60 252869453 252869473 TTGTTTGATGTCCGGTTACTC 59 Novel Rattus norvegicus 81 AABR07013724.1 ENSRNOG00000057103 ENSRNOT00000080920 1 1 1 80 2 253691752 253691770 AGATGATGACTCAGCATGG 57 253691814 253698806 TAGGTGTCTTGACATGCTG 57 Novel Rattus norvegicus 81 Mroh4 ENSRNOG00000005382 ENSRNOT00000076443 3 1 4 82 7 115868316 115873155 AGAAACACTCCAGATAACTTGG 58 115868255 115868273 TTAACCACCATGTCCTCCC 59 Novel Rattus norvegicus 81 AABR07072200.1 ENSRNOG00000059704 ENSRNOT00000079379 3 1 1 60 10 101989814 101989833 TACACTGAAAGCCAAGAGTG 58 101989858 101989876 ATTCCAGAGCCTTAGAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000041737 ENSRNOT00000063490 2 1 1 60 1 70440761 70440782 CTGATTAGTTCTTGGATGGGAG 58 70440722 70440743 TACATCAGTAGATCCCTGAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA11 ENSRNOG00000052201 ENSRNOT00000087193 3 1 1 63 3 103986631 103986651 TGGCTCCTCTGTTTATAACAC 58 103986676 103986694 ACTTTGTAGCCCTCCTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053152.1 ENSRNOG00000041826 ENSRNOT00000063579 1 1 1 60 3 94352225 94352246 GGAGTGTTTGCTGTATAATTGG 58 94352186 94352204 CAAGTCATGCCTACTGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034131.1 ENSRNOG00000058877 ENSRNOT00000083966 1 1 1 70 11 54829718 54829736 TGAGGTCATGGCAGATCTG 59 54829785 54829803 AAGGAAAGAGGAGAAGGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AC112355.1 ENSRNOG00000057744 ENSRNOT00000083920 3 1 1 80 X 53046034 53046057 AGATTTCACCTCACATGCGA 60 53046098 53046118 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 AABR07028530.1 ENSRNOG00000047547 ENSRNOT00000072769 1 1 1 60 17 73695581 73695599 AATGCCTCCATGAGATCCA 59 73695623 73695641 TCCTTCCACCCTTGATCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072995.1 ENSRNOG00000056668 ENSRNOT00000086134 1 1 1 60 4 56675658 56675678 TCAGATACCTCATAAGAGCCT 58 56675618 56675636 CTACTTTCTCCCTGCTCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039139.1 ENSRNOG00000050331 ENSRNOT00000074830 3 1 1 72 X 69152302 69152320 GCTGGTGCTAAATTGGGAG 59 69152244 69152262 GATATTGTCCACTGGGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07008513.1 ENSRNOG00000056876 ENSRNOT00000078624 2 1 1 70 2 62904470 62904490 CAGTAAGTAAATCTGGGTGGG 58 62904522 62904540 TAGCGTCAGAATCACCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Chd9 ENSRNOG00000049302 ENSRNOT00000076814,ENSRNOT00000078786 3 2 4 80 19 17428778 17431014 AGCTCATGAATCTGGAACAC 58 17428717 17428736 GAAGAAGGCTGAACAGTTCC 59 Novel Rattus norvegicus 81 AC109542.1 ENSRNOG00000054931 ENSRNOT00000079280 1 1 1 63 1 214446736 214446754 AAGGAACTCAGGACACTGC 60 214446689 214446707 TTTCAAAGCGTGGTTGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AC109542.1 ENSRNOG00000054931 ENSRNOT00000079280 3 1 1 64 1 214446737 214446755 CAAGGAACTCAGGACACTG 58 214446689 214446707 TTTCAAAGCGTGGTTGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07024869.1 ENSRNOG00000059970 ENSRNOT00000083624 3 1 1 70 16 20108505 20108524 ATTTACGGAAAGTCAGGGCA 60 20108449 20108468 GCACAGGTTTCTAGTCTACC 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000076887 2 1 5 93 6 114780409 114966731 GAATACTCTAAATACAGTCTCCACG 59 114770908 114780361 GACACATTGAGTTCCTAAAGGT 58 Novel Rattus norvegicus 81 LOC100912565 ENSRNOG00000050595 ENSRNOT00000089382,ENSRNOT00000059320 2 2 4 88 5 77902271 77902289 TAAATGGAGAGTGCAGGGA 58 77749597 77902221 TGTATTCCCTCCGTCATACTC 59 Novel Rattus norvegicus 81 AC117925.8 ENSRNOG00000061902 ENSRNOT00000079376,ENSRNOT00000084381 2 2 2 85 4 114818607 114818766 TGAACTCTGGTGGTTCTGG 59 114818540 114818559 TGAGTTTAGCTCTTCGGTGG 60 Novel Rattus norvegicus 81 AC117925.8 ENSRNOG00000061902 ENSRNOT00000079376 1 1 2 139 4 114818850 114819358 ATCCCATCTGCTTCGAGAG 59 114818588 114818606 TGAGGACAGTCCAAAGCAG 60 Novel Rattus norvegicus 81 AABR07034833.1 ENSRNOG00000055204 ENSRNOT00000090447 2 1 1 68 12 54648 54667 TGTAAGTTCAGCTCCCAGAG 59 53885 53903 AAGTCTCCCTGGGTAAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07008911.1 ENSRNOG00000056969 ENSRNOT00000087246 3 1 1 118 2 78283287 78283305 TGATCTGTATGCCAACCCA 59 78283134 78283152 CTCAACAACAGCACATCCC 59 Novel DesignNoJunction Rattus norvegicus 81 SCARNA6 ENSRNOG00000054636 ENSRNOT00000084592 1 1 1 60 14 65281456 65281475 TTCACAGCTGACTGCTATCC 60 65281497 65281516 CATCCACCACTCATCAAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307100 ENSRNOG00000038436 ENSRNOT00000023150,ENSRNOT00000058552 2 2 5 97 2 123761678 123762138 CATTACAAGATGCCAACGTG 58 123762198 123762216 CATGATGAGCTCAGCATCC 59 Novel Rattus norvegicus 81 AABR07001519.1 ENSRNOG00000055547 ENSRNOT00000086127 1 1 4 80 1 49290238 49425763 GGATGTCAGGAACCCTGTC 60 49290176 49290195 ACACAGTACAAGTGGAAGCA 60 Novel Rattus norvegicus 81 AABR07032277.2 ENSRNOG00000057224 ENSRNOT00000080030 3 1 1 85 18 59328744 59328765 TCCTGAAGTGGAATAATCTTGG 58 59328811 59328831 TGAACAGAAACACAGTCCC 58 Novel Rattus norvegicus 81 SNORA64 ENSRNOG00000059404 ENSRNOT00000081773 3 1 1 61 10 14089019 14089037 TAGGCTTTACCCGTGTGAC 59 14089061 14089080 CAAGTACTGGAGGAACTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061780.1 ENSRNOG00000054430 ENSRNOT00000081511 1 1 1 60 4 143911871 143911889 TGCTGAGAGCTTCTCTGAC 59 143911912 143911931 CTGCCTCATGTCACAAACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058301 ENSRNOT00000082519 3 1 1 60 1 246926779 246926799 TCAAGGGTATACGAGTAGCTG 59 246926819 246926839 CTTTCTTGAGAGCTTGTTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002973.1 ENSRNOG00000050148 ENSRNOT00000074615 3 1 1 80 1 90949328 90949348 CCTTTCTCTGTCTGTCACC 58 90949266 90949286 TAGTGATGCCCTAAAGAATCC 57 Novel Rattus norvegicus 81 AC124205.2 ENSRNOG00000059975 ENSRNOT00000085007 1 1 1 80 5 140275568 140459759 TGTGACACAGGATGTGGAG 59 140275506 140275526 CTCAACTCAGGATCCTTAGCA 59 Novel Rattus norvegicus 81 AABR07000629.1 ENSRNOG00000049569 ENSRNOT00000071903 1 1 1 97 1 20332054 20332075 TCCTGTCCTAATAAGAACTGGG 59 20331977 20331995 ATAAGAAAGCAGCCGAGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07041229.1 ENSRNOG00000056845 ENSRNOT00000087749 1 1 1 83 X 123024315 123024333 TCATAGGGCAAGCCATGAC 60 123025458 123025482 CTTCTTCCTCATCAACTATGTTGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07041229.1 ENSRNOG00000056845 ENSRNOT00000087749 3 1 1 85 X 123024310 123024328 GGAAATCATAGGGCAAGCC 59 123025458 123025479 CTTCCTCATCAACTATGTTGTC 57 Novel DesignNoJunction Rattus norvegicus 81 LOC100363178 ENSRNOG00000043375 ENSRNOT00000085178,ENSRNOT00000021288 1 2 2 100 2 208543591 208545141 CTTTCACCTGGCACTTCAG 59 208550238 208550258 ACACAAACGATCAGAATGGAC 59 Novel Rattus norvegicus 81 AABR07044711.1 ENSRNOG00000026519 ENSRNOT00000039144 1 1 1 60 20 18046174 18046192 GACGTGCATGAGGTTAGGA 60 18046346 18046366 TCATCATCTTCTGAGCTAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 Fam9b ENSRNOG00000037455 ENSRNOT00000076290 3 1 3 100 X 73501494 73501512 CACACCAACAGAGGAAGAG 58 73501575 73502392 TCAGATGTTGAACTTCAGCA 58 Novel Rattus norvegicus 81 AC133273.1 ENSRNOG00000002486 ENSRNOT00000003363 3 1 1 71 10 34593465 34593483 CTATTCTGAGAGCAAGGGC 58 34593520 34593538 ATCAGAGGGTTGAGCATGG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000060400 ENSRNOT00000085105 2 1 1 60 5 88341896 88341914 TTGCTGTGCTACACAAGTG 59 88341854 88341875 CACTTGAGTGTAGATGTAGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041604.1 ENSRNOG00000038118 ENSRNOT00000058004 2 1 1 60 X 134618362 134618381 GCTAACATCAAATGGGTGAC 57 134618403 134618422 GTGAAGATGCCAGTAGACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021688.1 ENSRNOG00000050203 ENSRNOT00000070867 3 1 1 60 13 85549820 85549838 GGGACTCTTGTTACAAGCG 59 85549778 85549796 AAATGCAGAATCTCAGGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052258 ENSRNOT00000082069 1 1 1 60 13 31370621 31370639 GAGAAGATTAGCATGGCCC 58 31370663 31370681 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058514.2 ENSRNOG00000037185 ENSRNOT00000056134 2 1 1 60 7 121773746 121773766 GATCACTGTCACTTCTGAGGT 60 121773876 121773894 GGTTGATCTGGAAGTAGCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065772.2 ENSRNOG00000051653 ENSRNOT00000081996 2 1 1 110 6 140642199 140642218 GACATCAGTCTCAGCTTGGT 60 140641994 140642012 TTTCAGAGACCTTCCAGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07003241.3 ENSRNOG00000055194 ENSRNOT00000080896 1 1 1 60 1 99888420 99888441 CTTCATCTTCAGTTTCCTCAGC 59 99889270 99889288 AAAGGCGTACTGTAGCTCC 60 Novel DesignNoJunction Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000085052 2 1 6 80 10 74883441 74883461 ACACTATGAGAACTACAGGGC 59 74883503 74883711 GATCTGTCCTTGCGATTCC 58 Novel Rattus norvegicus 81 AC115214.1 ENSRNOG00000057588 ENSRNOT00000082583 2 1 1 86 7 13055337 13055355 CTCTGGAAGCACTACCCTG 60 13055411 13055429 GAGGACAAGATGGACCCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AC110682.1 ENSRNOG00000056669 ENSRNOT00000091392 2 1 1 77 18 8503639 8503657 AAATCTGACCTGGCAAGAG 57 8497637 8497655 ATGTTTGTTCCTCAGCACC 58 Novel DesignNoJunction Rattus norvegicus 81 AC110682.1 ENSRNOG00000056669 ENSRNOT00000091392 3 1 1 77 18 8503638 8503656 AATCTGACCTGGCAAGAGG 59 8497636 8497655 CATGTTTGTTCCTCAGCACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07000410.1 ENSRNOG00000059898 ENSRNOT00000078330,ENSRNOT00000086689 2 2 2 86 1 11984282 11985883 AGAAAGCAGGGTTTCACCA 60 11984214 11984232 AATGTGCTATCACCTGCCA 59 Novel Rattus norvegicus 81 AABR07000433.1 ENSRNOG00000055660 ENSRNOT00000082324 2 1 1 74 1 12400880 12400898 ATGACCAAAGTGAACAGGG 58 12403155 12403173 ATCTTCGATCAGGAGTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07016841.2 ENSRNOG00000055948 ENSRNOT00000088780 1 1 1 60 15 1161403 1161422 ATGCCAGCATGATGAATGTC 59 1152900 1152921 AATTAGGTCCACATCTCTACAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07031588.1 ENSRNOG00000055148 ENSRNOT00000091842 1 1 1 65 18 21111560 21111579 CTGTGACAGACGTCTTACTG 58 21113406 21113427 GGTTCTTCAACAACTCTAAGTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07049701.1 ENSRNOG00000060975 ENSRNOT00000088365 3 1 1 71 5 133892896 133892916 AGACTCAAGAGCTTCCTTCTC 59 133890126 133890144 TTCTTGTCCACTCAGTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002882.1 ENSRNOG00000055119 ENSRNOT00000089810,ENSRNOT00000084953 2 2 2 80 1 88265243 88266843 TAAGGAAAGCAAAGGCTGG 58 88266882 88266905 GATGACTCTTCTTCATAGAGTTCC 59 Novel Rattus norvegicus 81 AABR07032851.1 ENSRNOG00000051901 ENSRNOT00000082803 2 1 1 103 18 85816869 85816888 ATTGGAGCTATTGTCGTGTG 58 85814317 85814335 TTCTTCTTGAAGGTGTGGC 58 Novel DesignNoJunction Rattus norvegicus 81 LOC100911851 ENSRNOG00000061155 ENSRNOT00000087733,ENSRNOT00000085965 1 2 3 80 11 27569639 27574164 GGAAGGAGAACTACAAGCTC 58 27574206 27574225 CCAGGGCTTAGAAGTTTGAC 59 Novel Rattus norvegicus 81 AABR07066020.1 ENSRNOG00000060878 ENSRNOT00000085492 1 1 2 83 9 605115 605252 ATCTCCAGCTTGTGTATGAG 57 605051 605070 GGTCAATGTACTTCTTGGCT 58 Novel Rattus norvegicus 81 AABR07065387.1 ENSRNOG00000061041 ENSRNOT00000088112,ENSRNOT00000078853 2 2 3 85 6 125302280 125302301 GCCTTCTATATTGTGAGATGGA 58 125298540 125302235 GGCCTTTCATTCCATATCCC 59 Novel Rattus norvegicus 81 AABR07035065.1 ENSRNOG00000061479 ENSRNOT00000086043,ENSRNOT00000080405 1 2 2 82 12 3807737 3807755 CACCTATCCAGAGCATGAG 57 3807801 3807927 GGGAGTATGCCTTCATGAC 58 Novel Rattus norvegicus 81 AABR07004549.1 ENSRNOG00000059330 ENSRNOT00000086488 1 1 1 60 1 147435594 147435612 AGGAACTACCTCATCCCGA 59 147424536 147424554 CATGCAGCACTGATGTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053681.3 ENSRNOG00000061882 ENSRNOT00000085809 3 1 1 60 3 120257555 120257574 TCATGCATCTCATCATTGCT 58 120259534 120259553 AACTCAGCTCTAGGAATGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07024833.1 ENSRNOG00000058158 ENSRNOT00000089685 1 1 1 60 16 18598121 18598139 ACACAGTCATCTGCAGAGG 59 18601921 18601941 CATCAAACTTTGCCTTCTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07067076.1 ENSRNOG00000058900 ENSRNOT00000077497 3 1 1 61 9 29366497 29366516 TCTTTATGCTGATGAGGGCA 59 29403356 29403375 TACAAGATGGCCTCTTGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07054481.1 ENSRNOG00000052767 ENSRNOT00000080025 1 1 1 123 3 155687631 155687649 AGAAGATCTTCGCTGGTCG 60 155679346 155679364 ATAGACATGGCACTGCCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07027190.1 ENSRNOG00000053225 ENSRNOT00000085742 1 1 1 68 17 18866592 18866610 GAACTACATCTGAGGGCCC 60 18866923 18866941 ACTTTGGGAGAACTCTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027235.2 ENSRNOG00000060732 ENSRNOT00000090749 1 1 1 67 17 20636849 20636867 ATTAGAGGAGTTCAGCGGC 60 20668849 20668867 GAGAGTTCTGGGTTCGGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AC106606.1 ENSRNOG00000058736 ENSRNOT00000084033 2 1 1 60 1 273969834 273969852 TTCCTGACCGATTTCAGGG 59 273968424 273968442 TAATGCAGACCGCTAACAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07043701.2 ENSRNOG00000058049 ENSRNOT00000088764 2 1 1 60 19 36173618 36173637 TCGCCTCCTTTATGTGACAG 60 36174952 36174971 TGGATTTGGCCTGAAGTAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07029217.3 ENSRNOG00000054877 ENSRNOT00000086196 3 1 1 65 10 15170424 15170442 ACTGACCTACGATTGGCAG 60 15175427 15175445 CAACTGGTGTTGAGAAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07007663.1 ENSRNOG00000052958 ENSRNOT00000089639 2 1 1 60 2 22867890 22867911 ATGTCTTTGGTACTTGTTTGCC 60 22864579 22864597 AAATCCACAGAGGTGAGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07070131.1 ENSRNOG00000053537 ENSRNOT00000083973 3 1 1 95 8 53832027 53832045 CACAGCCTCTCAACTTCAG 58 53837429 53837448 TCATATGTTTGTCTCGGGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07028262.1 ENSRNOG00000057362 ENSRNOT00000083057,ENSRNOT00000078651 1 2 2 80 17 62682428 62682447 CATTTAGCTCCCAGTCACGA 60 62673390 62682385 AGTCACGTTTCGAGCTCTC 60 Novel Rattus norvegicus 81 AABR07070801.1 ENSRNOG00000061011 ENSRNOT00000085513 3 1 1 63 8 84893249 84893267 AGAGCCCTATGAAAGGAGC 59 84886664 84886683 TCCTCTTCCTCTTCCTCCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AC103129.1 ENSRNOG00000051835 ENSRNOT00000081126 3 1 1 60 7 140008677 140008696 GTCTCCAGTGTTTCTTCCAG 58 140010230 140010248 TGAGAAAGTCTTCTGCGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07012728.2 ENSRNOG00000061513 ENSRNOT00000079009 2 1 2 82 2 204040888 204040906 CTCGTGCAGACAACATCTG 59 204040951 204042859 AGAGAAGAGGCCATTCTGTG 60 Novel Rattus norvegicus 81 AABR07013729.1 ENSRNOG00000051456 ENSRNOT00000080332 2 1 2 80 2 254034641 254034659 CGTGGAGACACAGAATCTG 58 254034700 254038820 TCCAACTGTTCCTTAAGTTTGG 59 Novel Rattus norvegicus 81 LOC679475 ENSRNOG00000042970 ENSRNOT00000065242 1 1 1 240 2 193100914 193100932 TTCTTCCTGCTGTAGCCTG 59 193083973 193100710 AAGTGATGCTTGGCTACTG 58 NA DesignNoJunction Rattus norvegicus 81 Frmpd4 ENSRNOG00000004118 ENSRNOT00000039796 1 1 1 80 X 28162951 28162971 CAAGATTGAAGTCCAATCCAG 57 28163012 28166520 CTTTAACAGTTTCCGACACC 57 NA Rattus norvegicus 81 RGD1562962 ENSRNOG00000039192 ENSRNOT00000045023 2 1 1 60 X 112555255 112555274 TTCTGGATATGGTGGAGCTG 59 112555297 112555315 CGTTTGTCCTTCTGAGGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olfm3 ENSRNOG00000017969 ENSRNOT00000024243 3 1 1 80 2 217963526 217963544 AACTGGATGTCCCAAACTC 57 217963585 217971911 AATCTGAGTTAAGGTATCTGGC 58 NA Rattus norvegicus 81 Olr1670 ENSRNOG00000049000 ENSRNOT00000044420 3 1 1 60 20 386713 386733 CAGTCCAGCTTTATTTCTTCC 57 386753 386773 ATAAGAGCCAGGAGGATACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910420 ENSRNOG00000048940 ENSRNOT00000072457 1 1 1 60 20 753313 753332 CCAGTTCTTCTGTGATGTCC 58 753272 753296 CCCAGAATAGTCATTAGAACAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Iqsec2 ENSRNOG00000058975 ENSRNOT00000085263,ENSRNOT00000078210,ENSRNOT00000080331,ENSRNOT00000079802 2 4 5 80 X 22279976 22280475 CAGAGATGTGTTGGACTGTG 59 22280517 22280536 GATTGGAACTTCCTGAGTGC 59 NA Rattus norvegicus 81 Prmt6 ENSRNOG00000017187 ENSRNOT00000023079 2 1 1 217 2 213177266 213177284 TTTGCCATGGAGGACTGAG 60 213175149 213175168 TTCATGTATAGCCAAGGCGA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Arhgef16 ENSRNOG00000046803 ENSRNOT00000072786,ENSRNOT00000082847 3 2 2 80 5 171627703 171628558 ATCAGCAACAAAGGAGAACTG 59 171627643 171627662 TTGCAGTGTGATCTCATCAG 58 NA Rattus norvegicus 81 Cldn19 ENSRNOG00000007922 ENSRNOT00000047151 3 1 1 80 5 138302981 138302999 TGTCTCATGGTACGCTACC 59 138303042 138304560 GGACCAAATTCATACCTGGC 59 NA Rattus norvegicus 81 Mir6314 ENSRNOG00000050085 ENSRNOT00000071550 2 1 1 64 2 211682744 211682763 TATAAGGTCGCAGCCTTCAG 60 211682790 211682808 ACCATTGAGACCACAGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gzmb ENSRNOG00000045973 ENSRNOT00000059660 2 1 2 80 15 36470545 36470692 CTGTTAAAGCTGAAGAGTAAGGC 60 36470487 36470505 TTTCACTTTGACGTTGCGT 59 NA Rattus norvegicus 81 Chchd7 ENSRNOG00000031769 ENSRNOT00000047889 2 1 1 80 5 16847059 16847079 TAACTATGACAGGGAAAGGTG 57 16847119 16847688 TGGATCATGACAGAATTCCAG 58 NA Rattus norvegicus 81 Tmem89 ENSRNOG00000031141 ENSRNOT00000049240 1 1 1 60 8 117661265 117661283 TAAGGTGGCTAAGGGTCAG 58 117661694 117661712 TCGTTTCCAGTGTTTGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Syap1 ENSRNOG00000004304 ENSRNOT00000006584 2 1 1 80 X 33559677 33560134 AATCAAGAGGACGAAGAGGA 58 33560175 33560195 TAAGTTACAGGCATCAAAGGC 59 NA Rattus norvegicus 81 Mrp63 ENSRNOG00000010855 ENSRNOT00000064635 2 1 2 135 15 38097013 38097031 TCTAAGGGAACCTCTCCGT 59 38097321 38097339 CTTGGAAAGACACAGTCCG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tmem202 ENSRNOG00000026112 ENSRNOT00000030199 3 1 1 80 8 64304994 64305214 CTGAAATACCAACAGCCTACC 59 64304934 64304953 AGCCTCACTCAAATACTGCT 59 NA Rattus norvegicus 81 Pear1 ENSRNOG00000014243 ENSRNOT00000019502 1 1 1 80 2 187116893 187116914 TCACTACTATTCCAACCCTAGC 59 187116751 187116853 CTGCCTGGAATCTTGTTAGG 58 NA Rattus norvegicus 81 RGD1565653 ENSRNOG00000007803 ENSRNOT00000010249 1 1 1 60 8 119285694 119285715 CCACAAGACCACTATCTTTACG 59 119285736 119285754 GTGCTTCAGTTCGAACACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr143 ENSRNOG00000003543 ENSRNOT00000004758 1 1 1 80 X 23680150 23680170 CCACATACTTGCCACTTATGC 60 23680209 23682331 GTAAAGAGGCCACTGAAATCAC 60 NA Rattus norvegicus 81 AABR07006258.1 ENSRNOG00000028444 ENSRNOT00000039369 1 1 1 60 1 226252402 226252422 GAAGAAATCATCTAGGCGTCC 59 226252442 226252462 GGTCAAACGGCTGAATAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565536 ENSRNOG00000028910 ENSRNOT00000092158,ENSRNOT00000045362 3 2 2 83 3 110552679 110552697 GACCCTCTGTGACATCCAC 60 110552083 110552633 CTTTGACATCACACCTTCGG 59 NA Rattus norvegicus 81 RGD1563714 ENSRNOG00000031494 ENSRNOT00000050195,ENSRNOT00000089166 3 2 2 80 5 136074065 136074896 AGACTATTGGGATCCTGGC 59 136074003 136074021 ACATCAGGCTGTGAATCAC 58 NA Rattus norvegicus 81 Kbtbd11 ENSRNOG00000012333 ENSRNOT00000016420 2 1 1 67 16 79698553 79698572 GGATGGTACCATCTACTGTG 57 79698505 79698523 CCTCAGTGTCCTGAGAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC686660 ENSRNOG00000049480 ENSRNOT00000071063 3 1 1 60 1 170205993 170206013 ATCTTGGTTACTAAAGCCCGT 60 170206035 170206053 CCACGACTTTCAGTGTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crabp2 ENSRNOG00000022101 ENSRNOT00000025183 1 1 1 80 2 187325746 187325767 ACGGAGATTAACTTCAAGATCG 58 187325805 187326015 CCATTTCACCAAACTCTTACAG 58 NA Rattus norvegicus 81 Smcp ENSRNOG00000009326 ENSRNOT00000012371 3 1 1 125 2 192776116 192780486 CCTGATCAGAAACTCCAACTC 59 192776011 192776029 GTGATTTCTGCAGACAGCA 59 NA InUTR Rattus norvegicus 81 LOC686143 ENSRNOG00000023511 ENSRNOT00000032698 1 1 1 80 2 193184722 193184743 ATGTCAAATACCAAGTTCCGTG 59 193184526 193184655 CTGGACATTTCACATAAGTCTGG 60 NA Rattus norvegicus 81 Olr1246 ENSRNOG00000049805 ENSRNOT00000073541 2 1 1 60 8 42339179 42339200 TTATGTACCTAAAGCCCTCCTC 59 42339220 42339239 AAGACAGAAGACACTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mapk1ip1 ENSRNOG00000016935 ENSRNOT00000022714 3 1 1 60 1 211195604 211195626 GAGACATCAAGACTCTAACTCAC 59 211195566 211195587 GTATTGTGTCCTTGTTGTTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ripk3 ENSRNOG00000020465 ENSRNOT00000027759 1 1 1 80 15 34474045 34474291 TCTTCTGTCAAGTTATGGCTC 58 34473985 34474004 CACAAATCCTAGGTTCTCCA 57 NA Rattus norvegicus 81 Nmb ENSRNOG00000011011 ENSRNOT00000014639 2 1 1 80 1 142723130 142723148 ATCTGCTCAGGATCCTCCT 60 142721518 142723086 GCCTCCTGTACTGGATTGG 60 NA Rattus norvegicus 81 Rn60_2_0072.1 ENSRNOG00000050870 ENSRNOT00000074476 1 1 1 60 2 7230420 7230440 GGACAACTTTGCTTTACATGG 58 7230380 7230401 ATCTGATTCTCCTCTCAGTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Si ENSRNOG00000031067 ENSRNOT00000046681,ENSRNOT00000088131 3 2 2 80 2 170286474 170286496 GAATTACGGGTCATTAGACACTG 59 170285388 170286436 GTGACTTGTGCATCATATGGG 60 NA Rattus norvegicus 81 Id4 ENSRNOG00000016099 ENSRNOT00000021550 2 1 1 268 17 16694812 16694830 CTACATCCTGGACCTGCAG 60 16693618 16693637 TAATTTCTGCTCTGGCCCTC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ak8 ENSRNOG00000012761 ENSRNOT00000017029 1 1 1 80 3 7341750 7390753 CTACAGTCCCAACAGGGTG 60 7390797 7390815 GGGTCTGTCCTTCTCAGTG 59 NA Rattus norvegicus 81 Spata13 ENSRNOG00000013707 ENSRNOT00000018407 1 1 1 80 15 41048587 41050457 GCCATCAATGAGCTCATCAG 59 41050500 41050518 TTCCTGGTCATCCATGGTC 59 NA Rattus norvegicus 81 Itpr3 ENSRNOG00000052795 ENSRNOT00000090925 3 1 1 80 20 5688295 5690755 GAGATCCTGCAGTTCATCC 58 5690797 5690817 CACAAACTCCTTCTTGAAGAC 57 NA Rattus norvegicus 81 Slc6a9 ENSRNOG00000019484 ENSRNOT00000048770,ENSRNOT00000085527 1 2 2 80 5 136697900 136698047 CAAGTCTTCAGGGAAAGTGG 59 136698089 136698108 GTCACTCCACGAACAAACAG 60 NA Rattus norvegicus 81 Usp47 ENSRNOG00000026754 ENSRNOT00000065712,ENSRNOT00000087461 2 2 2 80 1 176899029 176899050 GACACGTACCTTGATATTCCAC 59 176899090 176904992 ATGCAATGCTTCTTCCACAC 60 NA Rattus norvegicus 81 Rn60_X_0551.1 ENSRNOG00000051362 ENSRNOT00000076572 1 1 1 61 X 54821365 54821383 TTGGGAGATCAAAGCACCT 59 54821402 54822102 GGATTACTGGTATAGAGTTAACCTC 58 NA DesignNoJunction Rattus norvegicus 81 Serpinb6b ENSRNOG00000016420 ENSRNOT00000059921 3 1 1 80 17 32774929 32774947 AAAGGGAACTGGAAGAAGC 58 32771560 32774886 AGGTTTCTCCTCATTCTTGG 57 NA Rattus norvegicus 81 Fbxo11 ENSRNOG00000016396 ENSRNOT00000021998 1 1 1 80 6 11663845 11664241 TGCATGACTTCTACAGATGTC 58 11663785 11663804 GATGGCACTTCTTAATGCAG 57 NA Rattus norvegicus 81 Ms4a3 ENSRNOG00000036625 ENSRNOT00000028493 2 1 1 80 1 227981225 227982441 GTTCCTCATCAAATGGCCTG 59 227981164 227981182 TGACTGAGAGCGAAATGGT 59 NA Rattus norvegicus 81 Olr1118 ENSRNOG00000030856 ENSRNOT00000046875 1 1 1 60 8 17860255 17860275 CCCTTATCTTCAGCTTGTTCC 59 17860215 17860236 ATGAGCAGATTTCCTAGTACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hk3 ENSRNOG00000026235 ENSRNOT00000031935,ENSRNOT00000079850 1 2 2 80 17 10139646 10143947 TAGCTTAGAACTGGCACAGG 60 10143989 10144008 AGAAGACTGGCTTGGATCTG 60 NA Rattus norvegicus 81 Rn60_X_0594.8 ENSRNOG00000051097 ENSRNOT00000076662 3 1 1 60 X 58595032 58595051 TAATGAGGACTGGGACTTGG 59 58594991 58595014 GTCATCAGTATCTTAAGGATTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nudt3 ENSRNOG00000061176 ENSRNOT00000083169 1 1 1 80 20 7160493 7160512 CACAGGACGTATGTGTACGT 60 7157249 7160452 TCTCTTCCTTCCGATGTTCAC 60 NA Rattus norvegicus 81 Atg2a ENSRNOG00000060707 ENSRNOT00000090100 2 1 1 80 1 221621575 221621594 GTCTCAGAGTACCTTCTCCA 58 221621637 221622017 CCTGTCTCATCCTTAGCCT 58 NA Rattus norvegicus 81 Cyp7a1 ENSRNOG00000009488 ENSRNOT00000012819 3 1 1 80 5 19366457 19368328 ATAAGGAGAAGGAAAGCTGGT 59 19366397 19366418 AGATCCAAATTTCAGAGCACAG 59 NA Rattus norvegicus 81 LOC103692171 ENSRNOG00000054176 ENSRNOT00000083560 3 1 1 84 4 114815323 114815342 CAGTGAACTTGGTGACTTCC 59 114815389 114815553 GACATTGTAGCTGCCATGC 60 NA Rattus norvegicus 81 Olr92 ENSRNOG00000015811 ENSRNOT00000021169 1 1 1 60 1 168455723 168455741 TCCAAACACAGGTCATCAG 57 168455681 168455699 CAAGCAATCATCACCACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC682666 ENSRNOG00000039592 ENSRNOT00000060688 3 1 1 158 18 28522915 28524279 GATGATGCACCAGGATGGT 60 28524401 28524419 ATCGCTAGCAGGACAAAGG 60 NA InUTR Rattus norvegicus 81 Mrgprx4 ENSRNOG00000014242 ENSRNOT00000019061 3 1 1 60 1 103380072 103380090 GGCAGACTCCTTCTTCCTC 60 103380030 103380050 GAAGTTCATGATCCGCATCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snrpc ENSRNOG00000000493 ENSRNOT00000000586 3 1 1 90 20 7417370 7418918 ACGATTCTCCGTCTGTGAG 59 7418970 7418990 TGTTCTTCCATCCATTTCTGG 58 NA Rattus norvegicus 81 Gnb2l1 ENSRNOG00000049070 ENSRNOT00000072179 2 1 1 60 12 35906013 35906032 TACCAAGGATGTGCTGAGTG 60 35905972 35905991 AGATCCAGAGACAATCTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sptlc1 ENSRNOG00000010882 ENSRNOT00000014546 3 1 1 81 17 11866146 11874597 CACATTTGATGTCCATCTGGA 58 11874637 11874658 GCCATAGGAGTAAATGATAGCT 58 NA Rattus norvegicus 81 Rn60_17_0356.1 ENSRNOG00000045721 ENSRNOT00000074800 2 1 1 82 17 35435123 35435143 AAATGAAGGGATTCCTTGGAC 58 35435185 35437554 TTGTCAAGCCTATAAGGTCAG 58 NA Rattus norvegicus 81 Olr376 ENSRNOG00000013192 ENSRNOT00000017604 1 1 1 60 1 230629646 230629664 CTACGTCTGCATCATCAGG 58 230629688 230629706 GGCTTTCCACTTTCCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nr2e3 ENSRNOG00000050690 ENSRNOT00000073122 1 1 1 80 8 64797617 64797878 CTCTTCAAACCTGAAACACGA 59 64797557 64797575 CTTAAGCATCACCTGGGAC 58 NA Rattus norvegicus 81 Rn60_X_0595.2 ENSRNOG00000051308 ENSRNOT00000076448 1 1 1 60 X 58804730 58804751 TTTAGATTCAGGAAAGGCAGAC 59 58804691 58804712 TTCTACATTCTCAAGAGTCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cts8 ENSRNOG00000040000 ENSRNOT00000061486 3 1 1 80 17 3385912 3385932 CTGATCCCAGTTTGGATTCTG 59 3385974 3386262 TCTGTCCTTCTTCCTCCAG 58 NA Rattus norvegicus 81 Sirt2 ENSRNOG00000020102 ENSRNOT00000084839,ENSRNOT00000064153 1 2 2 80 1 86961746 86961765 CATCTGCCACTACTTCATCC 58 86961806 86966513 TCCAGAGTGTCAATATTCTGC 58 NA Rattus norvegicus 81 Pnma2 ENSRNOG00000009815 ENSRNOT00000013001 1 1 1 80 15 43586282 43586579 ACATAAACAGGAGTCCTTGC 58 43586622 43586640 TAATCAGTGGGTAGGTGGT 57 NA InUTR Rattus norvegicus 81 Insig2 ENSRNOG00000002478 ENSRNOT00000003391 2 1 1 80 13 37279646 37279664 CCAGATGTGATCACCAGCA 60 37271797 37279603 TAGTCCAATCACAGCTGAGG 59 NA Rattus norvegicus 81 Fam122a ENSRNOG00000051051 ENSRNOT00000076544 1 1 1 60 1 242373357 242373375 ATGCAGATAAGCCACTCCT 59 242373315 242373333 ATTTCTCCACGTCGTTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sema3c ENSRNOG00000006526 ENSRNOT00000009132 2 1 1 80 4 14324422 14324440 GAATGTGCTCCCAAGTCTC 58 14321179 14324380 CAGTTTAACCTCCTTCCTCCT 59 NA Rattus norvegicus 81 Plcl1 ENSRNOG00000032659 ENSRNOT00000051463,ENSRNOT00000090621 3 2 2 83 9 62311728 62311746 AAAGGAAGGCTTGAAGGGA 59 62311790 62347596 TCTCCTTGTCCCTTCAATACAG 60 NA Rattus norvegicus 81 Prl7a4 ENSRNOG00000029126 ENSRNOT00000040600 2 1 1 80 17 39096716 39096737 GACTGTTAAATAATGCCACCAG 58 39096775 39097547 CATTGACTGTATATTTCCTGCG 58 NA Rattus norvegicus 81 Nrn1 ENSRNOG00000050767 ENSRNOT00000073967 1 1 1 95 17 27969343 27969361 GACTGTTTGCTCAAGCTGG 60 27926265 27969284 ATCCTCCCAGTATGTGCAC 59 NA Rattus norvegicus 81 Zfp777 ENSRNOG00000033639 ENSRNOT00000038517 2 1 1 92 4 77700169 77704260 GTCTCTATGGACTATGCAATATCC 59 77700100 77700118 CTCAGAGTCCTCTTGCTCC 59 NA Rattus norvegicus 81 Edrf1 ENSRNOG00000017728 ENSRNOT00000089957,ENSRNOT00000023877 2 2 2 80 1 205734235 205734255 AAAGATGCTCCTTGTGAACTG 59 205734295 205736861 GCTATTCTGACTGCTCATCTG 59 NA Rattus norvegicus 81 Rn60_17_0453.2 ENSRNOG00000060574 ENSRNOT00000077821 1 1 1 80 17 45211090 45211109 TAATTCACAGGAAGGCAAGG 58 45211149 45211318 TATGTTTGTCTCCTGGTAACAG 58 NA Rattus norvegicus 81 Cystm1 ENSRNOG00000018775 ENSRNOT00000068085 3 1 2 151 18 29191787 29191805 ACCTTATCCACAACAGCCA 59 29191917 29221868 AAATGTACACTGTGGTCTTAGG 58 NA Rattus norvegicus 81 Kank1 ENSRNOG00000016023 ENSRNOT00000021496,ENSRNOT00000080689 1 2 2 80 1 243386253 243386916 CACCGGTCTCTATGTATGTCC 60 243386955 243386976 TTCGAATCTTTATTCCCATCGC 59 NA Rattus norvegicus 81 Zfp161 ENSRNOG00000016719 ENSRNOT00000022396 2 1 1 151 9 117737828 117739078 CTGCTTATATCTGGCTTGCC 59 117741035 117741055 CAGCGTCTTATGATCATCGTC 59 NA InUTR Rattus norvegicus 81 Lypd3 ENSRNOG00000019999 ENSRNOT00000027100 3 1 1 92 1 81501830 81501848 ATTCAGCTACAGCAGTGCA 60 81501904 81502214 ATACGCACTCTCATTGCCT 59 NA DesignNoJunction Rattus norvegicus 81 RGD1308195 ENSRNOG00000031437 ENSRNOT00000036549 1 1 2 105 7 115978561 115981669 TGGAGCTAGCTGTAACACAG 60 115978475 115978493 ATGATGACACAGTGGGTGG 60 NA Rattus norvegicus 81 Pml ENSRNOG00000008400 ENSRNOT00000043434 1 1 1 80 8 63031841 63031859 ATTCCTCGACAGTACTCGC 59 63020591 63031798 CAGTAGATGTTAGTCTGCGC 59 NA Rattus norvegicus 81 Pex5 ENSRNOG00000010407 ENSRNOT00000014028,ENSRNOT00000085675,ENSRNOT00000014030 3 3 3 80 4 156412930 156412951 GAGTATCTGGAACAGTCTGAGG 60 156412454 156412890 TTCATCGTACCATCGGTCAG 60 NA Rattus norvegicus 81 LOC100360439 ENSRNOG00000029560 ENSRNOT00000043110 2 1 1 75 12 13461896 13461915 GATATGATCCGGGAGGTGTG 60 13461840 13461858 TGTCCTTGGACACCTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr736 ENSRNOG00000052729 ENSRNOT00000080981 2 1 1 60 3 79017631 79017653 CTCCTCAATCCTCTCATCTACTC 59 79017593 79017614 GATTCTTCATGGCTTTCTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr46 ENSRNOG00000031171 ENSRNOT00000000552 3 1 1 81 20 5453145 5454481 CTCTCGAACTGGGAGACAC 60 5453082 5453101 CATGAGCTTCTTTGTCACCC 59 NA Rattus norvegicus 81 Them6 ENSRNOG00000005929 ENSRNOT00000007773 1 1 1 60 7 115956851 115956870 AGTAGTACAGCACTTGTGCA 59 115958529 115958547 CTTCAAGTCTTCTGGCAGC 59 NA DesignNoJunction Rattus norvegicus 81 Agap3 ENSRNOG00000012764 ENSRNOT00000064386,ENSRNOT00000084777,ENSRNOT00000087120 3 3 3 88 4 7217200 7217220 AATCCTTGAACAAGGAGTGGA 59 7212054 7217150 CATGTAATCGTGCAGGCTG 59 NA Rattus norvegicus 81 Nipsnap1 ENSRNOG00000008374 ENSRNOT00000011158 2 1 1 81 14 85127725 85127743 CACCTGGATGAGGACTACC 59 85127788 85132179 ATAGGTGTACTGCCTGGTC 59 NA Rattus norvegicus 81 Dmrt1 ENSRNOG00000016075 ENSRNOT00000021779,ENSRNOT00000085356 2 2 2 106 1 243518367 243542071 CAGTGGCAGATGAAGACCT 59 243542141 243542159 ATCTGGGACATGCTCTGAC 59 NA Rattus norvegicus 81 Olr132 ENSRNOG00000029051 ENSRNOT00000050248 2 1 1 60 1 169074683 169074704 CGGATCTTGGAGTAACATTGAC 59 169074722 169074743 TGATTTAACCACAGTACACCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cstb ENSRNOG00000001201 ENSRNOT00000001593 2 1 1 81 20 10966662 10967167 CTTCATCAAGGTTGATGTCGG 59 10966601 10966621 CAAAGGCTTGTTCTCATGAGG 60 NA Rattus norvegicus 81 Mir433 ENSRNOG00000036497 ENSRNOT00000054605 2 1 1 60 6 133712348 133712368 GGTGAGCCTGTCATTATTCAG 59 133712390 133712408 GCCCATCATGATCCTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3580 ENSRNOG00000048556 ENSRNOT00000070841 2 1 1 60 X 151295663 151295684 CCTGCTTGTACTTATTCTGGTG 59 151295624 151295647 TACTCTACTCATACTACCCTAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910672 ENSRNOG00000049310 ENSRNOT00000064455 1 1 1 60 2 115093067 115093088 GACCAAGGGAAAGTATCATCAG 59 115093106 115093127 TAAGAGGATTCAACATAGGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565368 ENSRNOG00000050630 ENSRNOT00000047820 1 1 1 60 8 45561862 45561880 CATGTTTGTGATGGGTGTG 57 45561903 45561922 ATTGCTGACAATCTTGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trpm6 ENSRNOG00000013053 ENSRNOT00000017892 2 1 1 80 1 234514265 234514283 TCCGGAGAAACAAACACCA 60 234504912 234514224 AGGTTCTAAACCTATCTGGCTG 60 NA Rattus norvegicus 81 Usp29 ENSRNOG00000015956 ENSRNOT00000055721 3 1 1 81 1 69995418 70003525 TAGAAACCTGGGACTTGGG 59 69995355 69995374 TATGAGGTTGAGTCCTCGTC 59 NA InUTR Rattus norvegicus 81 Vps18 ENSRNOG00000013689 ENSRNOT00000018717 1 1 1 81 3 111097630 111097648 ATGAGGACTCATTGTCCCG 59 111097690 111098768 GCATTTACATACCCAGAATGGG 60 NA Rattus norvegicus 81 Rn60_1_1855.1 ENSRNOG00000051128 ENSRNOT00000076828 3 1 1 84 1 178475075 178475470 GAAGAAGAGACGACCAAGAG 58 178475010 178475029 GAAATGCACCATTAGGACAC 57 NA Rattus norvegicus 81 Olr1228 ENSRNOG00000048344 ENSRNOT00000072062 1 1 1 60 8 42018250 42018268 TCTTCTATGGATCTGGGCT 57 42018292 42018310 TGACCTACAGTCTCAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gcdh ENSRNOG00000003307 ENSRNOT00000004570 2 1 1 80 19 26002950 26002968 GCTCACTGAGATCACACTG 58 26002552 26002907 ATTTCTGGAGTAGCCTTGTC 57 NA Rattus norvegicus 81 Arhgap31 ENSRNOG00000003088 ENSRNOT00000004138 2 1 1 80 11 64677894 64689990 CTATGAGAAATTCACGGAAGC 57 64690031 64690050 AGCTCCTGGATAACATTCTG 57 NA Rattus norvegicus 81 Glmp ENSRNOG00000019281 ENSRNOT00000026153 3 1 1 83 2 187700449 187700467 AACTTCTGTGCCTTCAACC 58 187700514 187700632 AAGCATTGACCAGCAAAGG 59 NA Rattus norvegicus 81 Scd2 ENSRNOG00000046005 ENSRNOT00000075397 2 1 1 80 1 264063369 264063387 CCACAGGACTTACAAGGCT 59 264063430 264065131 TACACATCGTTCTGGAATGC 58 NA Rattus norvegicus 81 H2afb3 ENSRNOG00000029736 ENSRNOT00000043727 1 1 1 60 X 88602402 88602420 GACTTGGCAGTCTACAGCA 60 88602442 88602462 GTGAGATGGTGATGAATTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361087 ENSRNOG00000042929 ENSRNOT00000032218,ENSRNOT00000067037 3 2 2 81 13 88638291 88638309 TAACAAGACTGCTGAGGCC 60 88637361 88638248 TTGGACTGACCTTTCATCCTC 60 NA Rattus norvegicus 81 Ankrd6 ENSRNOG00000007110 ENSRNOT00000088179,ENSRNOT00000081748 1 2 3 80 5 48057257 48058373 AGAAACGTCAGATGTCATTGG 59 48057197 48057215 CCGAAAGTCTCAACTCCAG 58 NA Rattus norvegicus 81 Zpld1 ENSRNOG00000039517 ENSRNOT00000060577 2 1 1 80 11 47948645 47948665 TGGATTATTGCTACACAACCC 58 47948705 47957054 GATCTTTGTCACAGCTAAGGA 58 NA Rattus norvegicus 81 Nhlh1 ENSRNOG00000005166 ENSRNOT00000006862 3 1 1 195 13 90440089 90442857 AGAGTCCTTCTAGGCTCCA 59 90439912 90439930 AGTTGAGCATCATGGTGGA 59 NA InUTR Rattus norvegicus 81 Rn60_X_0632.2 ENSRNOG00000051148 ENSRNOT00000076552 1 1 1 60 X 62517143 62517161 TAAATGGCGGAGGAGATGG 59 62517182 62517203 GTAAAGCCAAACTCAAATGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Jade3 ENSRNOG00000039837 ENSRNOT00000061140 3 1 1 81 X 1939421 1939442 GCTATGACCTAGATGACATGGA 59 1935726 1939379 TCAATTGGGCCATAACCCA 59 NA Rattus norvegicus 81 AABR07019903.1 ENSRNOG00000040105 ENSRNOT00000061683 3 1 1 80 13 6712698 6712718 TTTGGACTACTGAAGGCTCAG 60 6712596 6712659 AGTCTGTTTCCTTGAATTTCCG 59 NA Rattus norvegicus 81 Slc15a2 ENSRNOG00000002305 ENSRNOT00000003189 2 1 1 80 11 66935108 66935691 CATGAAAGCTGTGCTGACC 60 66935735 66935753 AAGGCATGGTAGACAGAGG 59 NA Rattus norvegicus 81 AABR07020786.1 ENSRNOG00000039928 ENSRNOT00000049137 2 1 1 87 13 40300458 40300476 CTACAGCAGATCCTCGGAC 59 40300527 40300546 CTAACTTACCACTTGGTCGC 59 NA DesignNoJunction Rattus norvegicus 81 Bmf ENSRNOG00000007529 ENSRNOT00000010381 2 1 1 86 3 110307446 110319512 ATATGCAACAACACCAGCA 58 110307378 110307396 TTTCTCGTCTGTTCAAGGC 58 NA Rattus norvegicus 81 Prl4a1 ENSRNOG00000016436 ENSRNOT00000022028,ENSRNOT00000087424 3 2 2 90 17 38712548 38713753 CCCAACAGTTCCAACTGGA 60 38712476 38712494 ATTTCAGCCCACAGATGGT 59 NA Rattus norvegicus 81 Gnpda1 ENSRNOG00000047213 ENSRNOT00000071560 2 1 1 80 18 31481916 31483453 GATGCTAAAGAGGTGATGATCC 59 31481857 31481876 GTTCACACCCTCTTCAATGG 59 NA Rattus norvegicus 81 Prl2c1 ENSRNOG00000039058 ENSRNOT00000059738 1 1 1 82 17 38850115 38851000 CATCATCAACAGAATGCTTCAG 58 38850054 38850075 CATTGGATTTGAAGATTGGCAG 59 NA Rattus norvegicus 81 Ap1m1 ENSRNOG00000014454 ENSRNOT00000019350 1 1 1 80 16 19292241 19292263 CACAATATCCTTCATTCCACCAG 60 19291942 19292203 CAGATCAAAGGCTTCACATGG 60 NA Rattus norvegicus 81 LOC679565 ENSRNOG00000022709 ENSRNOT00000029408 1 1 1 60 5 847593 847613 CTGAGTCTGAGGAAGAAGAGG 59 847553 847571 TCACTGCCACTCTGTTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prkar1a ENSRNOG00000049876 ENSRNOT00000071153 3 1 1 83 10 97951769 97952451 AGGAGAAATGGATGTGTATGTC 58 97952494 97952513 TAAATCAAAGCCAGCTCTCC 58 NA Rattus norvegicus 81 Olr185 ENSRNOG00000017344 ENSRNOT00000023283 1 1 1 60 1 169913508 169913531 CTTATATGCTGTCTTCCATCTTCC 59 169913548 169913568 ACACGTATTAAGAGCCTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atxn7l4 ENSRNOG00000010415 ENSRNOT00000076183,ENSRNOT00000014054 2 2 4 102 6 52663089 52663107 GACTGTCCAGTGATGAAGG 58 52663173 52667416 AATGAGCAGAACGCAAGAG 59 NA Rattus norvegicus 81 Copa ENSRNOG00000006247 ENSRNOT00000008518 1 1 1 80 13 90501736 90501756 TACACATGGCTTAGATGAGGA 58 90501794 90502017 GGATCAATATCTGGGATTGTCTC 59 NA Rattus norvegicus 81 LOC498122 ENSRNOG00000048861 ENSRNOT00000071453 3 1 1 156 11 86303221 86303239 ACTACTATGTCCATGGCGA 58 86300358 86300376 ATGAGGGTGTGCTTCTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Tcea1 ENSRNOG00000022323 ENSRNOT00000010893 1 1 1 80 5 14514105 14514123 GTGCAAACTCGTAGTGCTG 60 14512552 14514061 TCAACAGAACTTCCACCGA 59 NA Rattus norvegicus 81 Rerg ENSRNOG00000027592 ENSRNOT00000030850 3 1 1 88 4 171072453 171072472 AATCAACCTACCGACACCAG 60 171070868 171072402 CTGGATGGTGTCTTCCTGG 60 NA Rattus norvegicus 81 Selplg ENSRNOG00000000699 ENSRNOT00000000888 1 1 1 78 12 48578423 48578441 AAAGGCAGAGACCTCACAG 59 48578509 48578527 TGAGGTCTCTGCCTTTGTG 60 NA DesignNoJunction Rattus norvegicus 81 Efna4 ENSRNOG00000020588 ENSRNOT00000086916,ENSRNOT00000027935 2 2 2 118 2 188657365 188657383 CTTCGAGTTCTTGCCTGGA 60 188656576 188656936 CTGACTCGGATCTGTCCTC 59 NA Rattus norvegicus 81 C2cd3 ENSRNOG00000017608 ENSRNOT00000023802 3 1 1 80 1 165452552 165452571 CTATGGAGAGTCTGATGCAC 58 165452613 165453194 ACATTGGGATCAGTGATCCT 59 NA Rattus norvegicus 81 Prkdc ENSRNOG00000025028 ENSRNOT00000035247 3 1 1 80 11 89459587 89463676 GTTACATCTGACGAAGCACTG 59 89459527 89459547 TATTTGTCCTCCCAGAGATCC 59 NA Rattus norvegicus 81 Arl6 ENSRNOG00000001689 ENSRNOT00000002293 1 1 1 80 11 42875530 42875550 GCAGTGACTTCTGTGAAAGTG 60 42875589 42878985 ATCACTAGCACAAATATGCCAC 59 NA Rattus norvegicus 81 Trim41 ENSRNOG00000002388 ENSRNOT00000003246 1 1 1 80 10 34161497 34161516 TAGGAAGCATCTAGAGGCTG 58 34158402 34161455 GACTTCATCTGGCTCTTCAG 58 NA Rattus norvegicus 81 Rnf14 ENSRNOG00000045637 ENSRNOT00000075159 2 1 1 80 18 31457053 31458173 CTCCTGGTCAGGTCAAAGAG 60 31458213 31458234 GATCCAAAGTAGACTGGAGGAG 60 NA Rattus norvegicus 81 Zfand5 ENSRNOG00000018107 ENSRNOT00000024583 3 1 1 89 1 238848203 238850289 AGAGCCAGTTGTCACTCAG 59 238850342 238850360 TTTGGTTTGGGCAACTCAG 59 NA Rattus norvegicus 81 Olr1185 ENSRNOG00000039892 ENSRNOT00000061271 2 1 1 60 8 21164813 21164833 AGTTGCTTCACTGATGTACAC 59 21164855 21164873 CAGGCTGTAGATGAAGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gzmn ENSRNOG00000029860 ENSRNOT00000050660 2 1 1 81 15 35152092 35152556 CACTGGAAGCTCAATGACAG 59 35152030 35152048 TTCCACAGGGATGATCTGC 60 NA Rattus norvegicus 81 Epm2aip1 ENSRNOG00000043006 ENSRNOT00000056050 2 1 1 60 8 119524778 119524798 TCTGACCATTATCAACCTGAC 58 119524819 119524838 CAGAATTGCCGACATGAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911576 ENSRNOG00000050800 ENSRNOT00000060515,ENSRNOT00000086177 2 2 2 82 14 88573311 88573329 AGATGACTCTGCTGAGGAG 58 88573375 88573498 CATCCTTCAACTCCAGCTG 58 NA Rattus norvegicus 81 Prl3d4 ENSRNOG00000016792 ENSRNOT00000022512,ENSRNOT00000087291 2 2 2 80 17 42921196 42921927 TCAACAGGACTCAGACTAAGG 59 42921136 42921156 ATGACTGCAAGTCTTTGAGTC 59 NA Rattus norvegicus 81 Sec13 ENSRNOG00000010628 ENSRNOT00000014377 2 1 1 81 4 145693865 145693886 AAGTCATTATCTGGAAGGAGGA 59 145693410 145693824 ACAGAGTTCACTGAGGAGTC 59 NA Rattus norvegicus 81 Olr1124 ENSRNOG00000046796 ENSRNOT00000050430 1 1 1 60 8 18796204 18796223 AAATGCCATCATCAGAAGGA 57 18796246 18796264 ACCAACAAATGAGACCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dpysl2 ENSRNOG00000009625 ENSRNOT00000012996 2 1 1 80 15 43487537 43496170 GAAGAAGGGAACTGTGGTG 58 43487475 43487496 CAGTTCTTGCTCCAATAATGAG 58 NA Rattus norvegicus 81 RGD1559536 ENSRNOG00000039250 ENSRNOT00000060113 3 1 1 83 X 42952703 42953619 GTTCAGGCGTCCAGTAGAG 60 42953666 42953684 CCATTGGTTGCACAGACTG 60 NA Rattus norvegicus 81 Olr818 ENSRNOG00000049389 ENSRNOT00000007229 1 1 1 60 4 72603581 72603601 CTGGTGGTAATGTCCTATGAC 58 72603623 72603641 TGACAGAGTATCGGAGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr148 ENSRNOG00000016993 ENSRNOT00000022789 1 1 1 60 1 169305662 169305681 TCAACCATACTGTCATAGCC 57 169305704 169305722 ACAATAGCCACACTACGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sox7 ENSRNOG00000012049 ENSRNOT00000016503 1 1 1 80 15 47293951 47293969 GATGAGAGGAAACGTCTGG 58 47294013 47297511 CTTCCATGACTTTCCCAGC 59 NA Rattus norvegicus 81 Lyrm2 ENSRNOG00000043105 ENSRNOT00000065926 1 1 1 80 5 48048398 48048417 GATTCTGACCGGAAATACCT 57 48048460 48048850 GATTGTATCCTCCTCGGTG 57 NA Rattus norvegicus 81 Tmem79 ENSRNOG00000019414 ENSRNOT00000026414 2 1 1 82 2 187704360 187704378 TGCTTTCCACCTATCTGCC 60 187702399 187704317 GTATATCAGCCGAGATATGGCA 60 NA Rattus norvegicus 81 Hmbox1 ENSRNOG00000013326 ENSRNOT00000038336 3 1 1 80 15 48268740 48278050 AATTAATGAGGAGGGACAGCA 59 48268680 48268699 CAACTGCTTGGGAAATCCTC 59 NA Rattus norvegicus 81 Hdhd3 ENSRNOG00000015195 ENSRNOT00000020380 2 1 1 189 5 78359254 78361538 CAGGATCTTGTGCTGAAAGAC 59 78359085 78359103 TCAGTAGACGCATCTGGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC681338 ENSRNOG00000032947 ENSRNOT00000047517 1 1 1 60 9 60923371 60923389 AACTTACGTGCCTGTTACC 58 60923329 60923350 TTAGTTCTCATCCACTTTGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC121415.1 ENSRNOG00000007402 ENSRNOT00000009702 1 1 1 60 2 178212696 178212715 AGAAGGCAAAGAACTCTCAC 58 178212655 178212673 GCCATGTGAATCTCAGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_15_0083.1 ENSRNOG00000008664 ENSRNOT00000011480 2 1 1 71 15 4130907 4131039 ACAACTCCAGCAAAGAAGG 58 4131074 4131092 ATCTTCATCCTCATCGCGG 60 NA DesignNoJunction Rattus norvegicus 81 Cry1 ENSRNOG00000006622 ENSRNOT00000009124 2 1 1 80 7 24622842 24623175 GGAGACTATATTAGGCGTTATTTGC 60 24623213 24623231 TTCTGGTGCATTCCAAGGA 59 NA Rattus norvegicus 81 RGD1563917 ENSRNOG00000017273 ENSRNOT00000029635 1 1 1 80 9 92765585 92765603 ACCAAGCTGTTTCCTTTCC 58 92764577 92765541 GGCTTCGTAAGAATCAGCA 58 NA Rattus norvegicus 81 AABR07018269.1 ENSRNOG00000031720 ENSRNOT00000041154 3 1 1 81 15 49666827 49666845 CAAAGCTGACCAAATGGCA 59 49666145 49666782 ACCATGACACCTAGGTCTG 58 NA Rattus norvegicus 81 Mapk13 ENSRNOG00000000515 ENSRNOT00000000621 2 1 1 80 20 6023749 6023904 GTCTAAAGTACATCCACTCAGC 59 6024506 6024525 GCTCACAGTCTTCATTCACG 59 NA Rattus norvegicus 81 Rinl ENSRNOG00000025354 ENSRNOT00000036907,ENSRNOT00000078156 3 2 2 80 1 86979515 86980096 TAAGCACTCAGATCCTCGTC 59 86980139 86980157 TAGAGCTGGTTCACCACAG 59 NA Rattus norvegicus 81 LOC102546937 ENSRNOG00000049468 ENSRNOT00000044160 2 1 1 80 19 28594228 28594250 CAACTTAGTGATGGAGAACACTG 60 28593537 28594190 AGCAGGTTTCTAGAGAAGGTC 59 NA Rattus norvegicus 81 Il25 ENSRNOG00000016804 ENSRNOT00000022563 2 1 1 94 15 33596779 33598966 AGCTATGAGTTGGACAGGG 59 33599023 33599042 GATCCTGTCTGTAGGCTGAC 60 NA Rattus norvegicus 81 Kcnj9 ENSRNOG00000007645 ENSRNOT00000080638 3 1 2 112 13 90704016 90704034 GAAGGTGGAGGAAGAAGGG 59 90703281 90703941 GTTTGCCTGTAACCTTGGAC 60 NA Rattus norvegicus 81 RGD1560755 ENSRNOG00000059911 ENSRNOT00000078964 2 1 1 85 16 70906206 70906224 TCCTCCTCATCCTCTACCC 59 70906270 70907482 CAGGATAGAATTCATCCCTGGA 59 NA Rattus norvegicus 81 Desi2 ENSRNOG00000004524 ENSRNOT00000005967,ENSRNOT00000087964 1 2 2 80 13 96141614 96141637 GAATGAATACACCTCATCTATCGG 59 96141674 96147412 CCACCATAAGCGAATTCTCTG 59 NA Rattus norvegicus 81 Ubn1 ENSRNOG00000003019 ENSRNOT00000061236 3 1 1 80 10 10714341 10714361 TGCAGTTTAGACAAGCTTCAG 59 10713670 10714299 TCAACTTCCGCTTCTTTGG 58 NA Rattus norvegicus 81 Noc3l ENSRNOG00000013965 ENSRNOT00000019056 1 1 1 80 1 257488721 257488741 GTTTAAGGACATCACTCCCTC 58 257488469 257488682 TGGGTTTCTTTACGAATCTTGG 59 NA Rattus norvegicus 81 Fntb ENSRNOG00000007660 ENSRNOT00000010588 3 1 1 80 6 99927191 99935683 AGAGGTGGATGTAAGAAGTGC 60 99935725 99935743 CCTTCGAAGAGGTCAGGAG 59 NA Rattus norvegicus 81 Dtwd2 ENSRNOG00000059142 ENSRNOT00000088900 2 1 1 80 18 43905158 43905176 CATATCTGCCAGTTCGTCC 58 43901814 43905114 GCAACACTTTGCTTTCCTC 58 NA Rattus norvegicus 81 Defb15 ENSRNOG00000048359 ENSRNOT00000058066 2 1 1 72 16 75107887 75107905 CCTTCAGGTCATGAAGACG 58 75105467 75107851 AAATGCATTCTTGGCTGGG 59 NA DesignRelaxed Rattus norvegicus 81 Phyhip ENSRNOG00000049071 ENSRNOT00000074912 2 1 1 60 15 52156875 52156895 CCATCACAAGGAGTACTTCCA 60 52158272 52158292 GTAAGGCTGTAGTACATTCCC 58 NA DesignNoJunction Rattus norvegicus 81 Rn60_20_0013.2 ENSRNOG00000053091 ENSRNOT00000079038 1 1 1 60 20 1578367 1578385 CTTTGCTTCATCACCACCA 58 1578325 1578343 ATCCATCTCCAGTCCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dmxl1 ENSRNOG00000024671 ENSRNOT00000031812 2 1 1 80 18 44564456 44565184 AAGAATCTCAGCAGGAAACAG 58 44565226 44565244 AAGCAAAGAGAAGAGGCAC 58 NA Rattus norvegicus 81 Pkm ENSRNOG00000011329 ENSRNOT00000015332,ENSRNOT00000083666 1 2 2 80 8 64490594 64490615 AAGGAGATGATTAAGTCTGGGA 59 64490654 64493331 GATAGTCTCTGCATGGTACTC 58 NA Rattus norvegicus 81 Tppp ENSRNOG00000028261 ENSRNOT00000039166,ENSRNOT00000081225 3 2 2 94 1 31871822 31880989 CAAGATCAAAGGGAAGTCCT 57 31871747 31871765 TGCTCTTATCCTTGAACCG 57 NA Rattus norvegicus 81 Vwa5a ENSRNOG00000046414 ENSRNOT00000000211 2 1 1 80 3 159019761 159020248 ATCATGCAGGCTCTTCTATCC 60 159020288 159020308 CAAAGACAGCAGGATTCACAG 60 NA Rattus norvegicus 81 Fggy ENSRNOG00000008907 ENSRNOT00000011767 3 1 1 80 5 114546503 114560511 TCACGAAGGAAATTGTTCAAGG 60 114560551 114560570 AGACAACCAGAGAACAGGTG 60 NA Rattus norvegicus 81 Arhgef7 ENSRNOG00000012934 ENSRNOT00000043449,ENSRNOT00000017947 3 2 2 80 16 83043406 83043426 CATGAGTATTCCAAGGAGCTG 59 83043122 83043364 TGCTGAACTCAACTTCTCG 58 NA Rattus norvegicus 81 Rn60_20_0009.7 ENSRNOG00000058671 ENSRNOT00000079140 1 1 1 60 20 1612357 1612380 CACTCAATCCACTTATCTACACTC 59 1612320 1612338 TTCCTATTCAGAGCACGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxo4 ENSRNOG00000015622 ENSRNOT00000020925 3 1 1 80 2 53807332 53807354 GTTGAGTTTGATGTCTTCTGAGG 60 53803561 53807293 ACTCCAGATCCAATACCGTC 59 NA Rattus norvegicus 81 Rn60_15_0609.1 ENSRNOG00000029520 ENSRNOT00000045917 2 1 1 60 15 57187913 57187933 GTGAAAGTGAAGAGAAACTGG 57 57187873 57187894 CACTCCTTTGAAGAAACTACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clec4d ENSRNOG00000010181 ENSRNOT00000013536 2 1 1 80 4 156260369 156260389 TCTTATGAGAAGGTGGAAGGT 58 156260429 156262148 CCCAACTTTCCAGAATACCAC 59 NA Rattus norvegicus 81 Imp3 ENSRNOG00000017460 ENSRNOT00000023456 2 1 1 60 8 61607057 61607075 CAGAAGCTGCTGAAACAGG 59 61607099 61607117 CGTGAAGGTTATGGTCGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC288913 ENSRNOG00000049931 ENSRNOT00000072494 3 1 1 112 19 25356317 25358369 AGTTGAAGAAGAGCCTGGA 58 25356223 25356241 CTTTGATGCTCCCTTCAGC 59 NA Rattus norvegicus 81 Tmem199 ENSRNOG00000009896 ENSRNOT00000013220 2 1 1 80 10 65776468 65776951 ACAGAAATGGCCTCGAGAG 60 65776406 65776425 CCTTACCATGACGTACAGCT 60 NA Rattus norvegicus 81 RGD1560108 ENSRNOG00000032042 ENSRNOT00000051855 3 1 1 115 1 222673112 222673397 CTCACCAGACGATGACCTC 60 222673475 222673494 CCTCTTCCTTTACGTCTGGG 60 NA Rattus norvegicus 81 Olr767 ENSRNOG00000045977 ENSRNOT00000047051 3 1 1 60 3 102773650 102773672 GTCATCCTGATCTTAGTAACCAC 59 102773612 102773631 CCAACAAGAAGTACATGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1746 ENSRNOG00000050443 ENSRNOT00000068508,ENSRNOT00000000996 2 2 2 60 20 1889944 1889965 AACTCTTCATCTTCATGTCCCT 59 1889985 1890004 AAGGCCATCACTGTTAGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ears2 ENSRNOG00000025353 ENSRNOT00000071946 2 1 1 80 1 192014506 192014524 TGTTTCTGTTCACCACAGC 59 192008457 192014462 TCGATTGTCATACCGAGGT 58 NA Rattus norvegicus 81 Icam4 ENSRNOG00000042078 ENSRNOT00000067741 1 1 1 80 8 22048070 22048202 AGGATCACTGCTTTCAAACG 59 22048243 22048263 GCATCTCAGAGTGTACTTGTG 59 NA Rattus norvegicus 81 Defb43 ENSRNOG00000038759 ENSRNOT00000059212 2 1 1 80 15 46196814 46201120 CCATACTTCCTCTGGCCAG 60 46201163 46201182 CTTTGCACTTCATCCTGCAG 60 NA Rattus norvegicus 81 Kcnh6 ENSRNOG00000008078 ENSRNOT00000010816 3 1 1 80 10 94226589 94226610 TTTCCTGAAACTTCAGTGACTC 59 94226651 94227424 GTAGCTTAGGGTCTGAGCA 59 NA Rattus norvegicus 81 Grin2b ENSRNOG00000008766 ENSRNOT00000011697 3 1 1 80 4 169752537 169873127 TGGCGGATAAGGATGAGTC 59 169752475 169752493 TGATGTTGAGCATGACGGA 59 NA Rattus norvegicus 81 Rab3d ENSRNOG00000011582 ENSRNOT00000015609 2 1 1 152 8 22926885 22926903 GGATCAAGCTGCAGATCTG 58 22926203 22926312 TAATCTGCGTAGCCCAGTC 59 NA Rattus norvegicus 81 Slc22a8 ENSRNOG00000018086 ENSRNOT00000024488 1 1 1 80 1 224813210 224813233 GTCTATATGATCTTCCGATTCCTG 59 224813269 224813778 CCATTCCACATTCAAGATAACG 58 NA Rattus norvegicus 81 Lce1l ENSRNOG00000042105 ENSRNOT00000065884 3 1 1 101 2 193165026 193165696 CTGAACAGATTTACAGACTTCCTC 59 193164948 193164967 TTTAGGAGTCTGGCACTTGG 60 NA InUTR Rattus norvegicus 81 Mir653 ENSRNOG00000036462 ENSRNOT00000054572 3 1 1 61 4 28658934 28658955 AACATTCTCTACTGAACCAAGC 59 28658894 28658915 CTTGCAATAGTGAAACAAACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nr3c1 ENSRNOG00000014096 ENSRNOT00000044287 1 1 1 80 18 31732446 31733553 CATGCATGAGGTGGTTGAG 59 31732384 31732405 TCTGGGAATTCAATACTCATGG 58 NA Rattus norvegicus 81 LOC367117 ENSRNOG00000031132 ENSRNOT00000046322 2 1 1 80 8 86284747 86286967 GCAGCTGTGTTTATCAATGAC 58 86284687 86284706 GTGGTAGCACACTATTGTCC 58 NA Rattus norvegicus 81 Rasgrp2 ENSRNOG00000021098 ENSRNOT00000028646 1 1 1 80 1 221786643 221786662 TCGTACACAACTTCCAGGAG 60 221786705 221786924 TGTAGATGCCCAGGATCAG 59 NA Rattus norvegicus 81 Camk2d ENSRNOG00000011589 ENSRNOT00000016026,ENSRNOT00000015564,ENSRNOT00000068198 3 3 3 81 2 231045156 231045177 GGTATCTTTCTCCAGAAGTCCT 59 231045219 231056620 ATGTAGAGGATGACGCCAC 59 NA Rattus norvegicus 81 Olr1020 ENSRNOG00000049559 ENSRNOT00000040812 3 1 1 60 7 7311021 7311041 CGGTTCTTAATGAGCATTCTC 57 7310981 7311002 GAGCTGCACAAGAATTATAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563905 ENSRNOG00000049382 ENSRNOT00000071025 1 1 1 66 1 100676004 100676022 CTCTCCATTCTCAGGCTCG 60 100676055 100676073 CTTATGCCCATATGCCTGC 59 NA DesignNoJunction Rattus norvegicus 81 RGD1563905 ENSRNOG00000049382 ENSRNOT00000071025 2 1 1 67 1 100676004 100676022 CTCTCCATTCTCAGGCTCG 60 100676056 100676074 CCTTATGCCCATATGCCTG 58 NA DesignNoJunction Rattus norvegicus 81 Prl6a1 ENSRNOG00000017089 ENSRNOT00000022944 3 1 1 84 17 42708112 42708893 GTGTATTTCTGGAGGATGTGC 59 42708048 42708066 GTAAATGGTGATCGGTGGC 59 NA Rattus norvegicus 81 Rn60_20_0009.3 ENSRNOG00000054154 ENSRNOT00000090533 2 1 1 60 20 1515615 1515633 CCACCTACCTGAAACCTCC 59 1515573 1515591 ATAACAGCAGCTACCACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cabp2 ENSRNOG00000018339 ENSRNOT00000071109 2 1 1 89 1 219333329 219333910 CACAGCAAATCAGTGGTGG 60 219333963 219333981 CAATCATGTCTGCCGTCTC 59 NA Rattus norvegicus 81 Olr1306 ENSRNOG00000039236 ENSRNOT00000060093 2 1 1 60 8 43283138 43283158 TGGTCTAGTGTCTCTTGTCTG 59 43283098 43283118 GATTGTGATTCGCGTATAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss12 ENSRNOG00000015353 ENSRNOT00000021116 3 1 1 80 2 227697830 227700171 TGGGAATAAAGAGACCCTCTC 59 227700213 227700231 TTGTTCCCACCAATGATCC 58 NA Rattus norvegicus 81 LOC100912634 ENSRNOG00000032845 ENSRNOT00000064243 1 1 1 80 17 42849852 42850513 CCTTATACAACAGGACTCAGG 58 42849792 42849810 AGTCTTTGAGTCCAGACCA 58 NA Rattus norvegicus 81 LOC100910553 ENSRNOG00000049652 ENSRNOT00000074265 2 1 1 60 15 35534768 35534787 CCAAGGGAAAGTGTCATCTG 59 35534808 35534828 GATCAAAGGATTCAGCATGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001099.1 ENSRNOG00000017963 ENSRNOT00000024149 2 1 1 116 1 37886580 37886598 ATGTGGCCGTTGATTTCTC 59 37886033 37886500 CAGCAAGACCCAAGAACAC 59 NA Rattus norvegicus 81 Fam98c ENSRNOG00000024036 ENSRNOT00000056964 1 1 1 81 1 88095580 88095935 TCAACAAGGTGCTTATGGGT 60 88095518 88095536 CTCTTCCAGGTAGGCATGG 60 NA Rattus norvegicus 81 Abcb1a ENSRNOG00000008012 ENSRNOT00000043822 1 1 5 80 4 22156218 22157078 CAATGAACTTGATGCAAACGTG 60 22156159 22156177 ACAAAGTAGGGCCACTCTG 59 NA Rattus norvegicus 81 Jrkl ENSRNOG00000047133 ENSRNOT00000072420 2 1 1 60 8 11887615 11887633 CAAGCAGCTCTGATTCCAC 59 11887573 11887593 TACATGGACGGCTTCATAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hectd1 ENSRNOG00000006905 ENSRNOT00000008459 2 1 1 80 6 72563474 72565504 GTAGCAAAGACTCTGTTACGG 59 72563414 72563433 TCGAGCTTTATCCAATGGTG 58 NA Rattus norvegicus 81 Olr1418 ENSRNOG00000061794 ENSRNOT00000050448 3 1 1 60 10 44025799 44025822 GCTATCTATAACTACATGCTCCCT 60 44025762 44025780 ACACCACCATGTCCTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Obp1f ENSRNOG00000045757 ENSRNOT00000045436 2 1 1 80 X 45283226 45283245 TTGGACAGTGAATGTCAGAC 58 45282292 45283186 TCTACCAGAGTAGTCAGTAGTG 58 NA Rattus norvegicus 81 Cox14 ENSRNOG00000061425 ENSRNOT00000091207 1 1 1 60 7 141380424 141380442 TACCATTACCTCCAGCTGC 59 141380465 141380484 CTGAGGTCTTCTGCTCTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cflar ENSRNOG00000012473 ENSRNOT00000016730 3 1 1 84 9 65563144 65563162 GGAACACCATGGCATTCAG 59 65568454 65569180 CTCTTCATGTATGTGCGGAG 59 NA Rattus norvegicus 81 LOC100909958 ENSRNOG00000048702 ENSRNOT00000071050 3 1 1 60 8 42833347 42833367 GTTTCTTGTACACAGTGATGG 57 42833386 42833407 TACCTTAGAGGGAAGCATATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-M3-1 ENSRNOG00000000763 ENSRNOT00000080622 1 1 2 60 20 1814896 1815078 GAAAGTATGAAAGCACTGAGTG 58 1814857 1814875 GGAGGTAACACGGTTATGG 58 NA DesignNoJunction Rattus norvegicus 81 Slc16a6 ENSRNOG00000000245 ENSRNOT00000088215,ENSRNOT00000045902,ENSRNOT00000078059 3 3 3 93 10 97738229 97741255 CTTTCGCACCAGCTATCAC 59 97738154 97738173 CAGACCATGACATTCAGCTG 59 NA Rattus norvegicus 81 Pus3 ENSRNOG00000012994 ENSRNOT00000017648 1 1 1 80 8 36767318 36767338 AGACAGACTTCCAACTATCAC 57 36767378 36767503 CAGGTCCAGAGAAATTACCTG 58 NA Rattus norvegicus 81 Olr1460 ENSRNOG00000046759 ENSRNOT00000040720 1 1 1 60 10 44805341 44805359 TACTTGCTCCTCTCACCTG 58 44805381 44805401 GTACACAAAGCTTCCAGTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1142 ENSRNOG00000045713 ENSRNOT00000050754 2 1 1 60 8 19274524 19274544 CAGCCTTTCATCTTTACCCTG 59 19274566 19274584 GCAGGTTTCCTATGGTGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ffar2 ENSRNOG00000021021 ENSRNOT00000028532 2 1 1 60 1 89269101 89269122 CTCTGCTATTCTACTTCTCCTC 57 89269062 89269080 AGTAGCAAACCTTTCCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Epcam ENSRNOG00000015667 ENSRNOT00000021135 3 1 1 80 6 11294719 11298023 GCTCAGAAAGACTGTGTCTG 59 11294658 11294676 AGTACACTGGCATTCACCA 59 NA Rattus norvegicus 81 Nol7 ENSRNOG00000017904 ENSRNOT00000024122 2 1 1 80 17 24018993 24019011 GGAACATGAACAACCTGCT 58 24019054 24019530 TTAGTCTGACCGACAGACTG 59 NA Rattus norvegicus 81 Egr3 ENSRNOG00000017828 ENSRNOT00000024067 3 1 2 108 15 51757035 51757053 TTGCCTGACAATCTGTACC 58 51757124 51758436 CCATCACATTCTCTGTAGCC 58 NA Rattus norvegicus 81 Hnrnpa3 ENSRNOG00000027006 ENSRNOT00000035567 1 1 1 111 10 80953436 80953458 GACCTACTCGTGTGAGGTG 60 80953532 80953551 ACCAGGCTTTACAGAATCCT 59 NA Rattus norvegicus 81 Pigb ENSRNOG00000059622 ENSRNOT00000088562 1 1 1 80 8 79710365 79712419 CAGTGTTCAATTACTGATCTGG 57 79710306 79710324 AGGGAGTAAAGCCTTAGGT 57 NA Rattus norvegicus 81 Neurod1 ENSRNOG00000005609 ENSRNOT00000007662 1 1 2 60 3 66417567 66417585 CCAGGGTTATGAGATCGTC 57 66416042 66417544 GGTCATGTTTCCACTTCCTG 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Pitpna ENSRNOG00000003846 ENSRNOT00000005368,ENSRNOT00000090554 3 2 2 80 10 63753430 63753453 GAGTACATGAAGGAAGACTTTCTC 59 63753490 63756364 TTTATGCACATTCTCCTGGGT 60 NA Rattus norvegicus 81 Efr3b ENSRNOG00000012950 ENSRNOT00000068214 3 1 1 80 6 28404828 28405074 TGTCTTCATGAAGAAGCACTC 58 28404768 28404787 TGCTTCTGGATGTTTGTCTC 58 NA Rattus norvegicus 81 Prss35 ENSRNOG00000025184 ENSRNOT00000034683 1 1 1 93 8 94424127 94424145 GACACAGCAAGCTTCTCAG 59 94437772 94437790 AAAGACAGGGTCCATCCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Smek3 ENSRNOG00000032858 ENSRNOT00000040923 3 1 1 71 X 57867538 57867557 CATCCATGTTTCAAGCACAG 58 57867987 57868008 AAGGTCTGAACATACTCAACTG 58 NA DesignNoJunction Rattus norvegicus 81 Prl3b1 ENSRNOG00000017185 ENSRNOT00000023086 3 1 1 80 17 42776098 42777141 AACCATGCTTCTCTGGGAC 60 42776036 42776055 AATTTGGTGCAGAAGTCACC 59 NA Rattus norvegicus 81 Far2 ENSRNOG00000001851 ENSRNOT00000002528 2 1 1 80 4 182551792 182551812 AGATCTGATTCCAGTTGACAC 58 182551851 182552517 GTTGACTTAGGTCTATGAACGG 59 NA Rattus norvegicus 81 Zfp874b ENSRNOG00000051377 ENSRNOT00000077781 3 1 1 92 1 37861689 37863702 TGACATGAAGGAAATGCTGTC 59 37861617 37861636 TACAGATTCCACTGAGCAGG 59 NA InUTR Rattus norvegicus 81 Olr1158 ENSRNOG00000026232 ENSRNOT00000032963 1 1 1 60 8 19916795 19916816 CCAATGATGTCCTGCTTTACTG 60 19916756 19916778 ATCCCAGACAGAGGAATAATACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncoa1 ENSRNOG00000004068 ENSRNOT00000091659,ENSRNOT00000068531 2 2 2 80 6 28710625 28710846 ACTTGTACAGGGAGGTGGA 60 28710563 28710583 TCTTCCATCATCAAAGGTGGT 60 NA Rattus norvegicus 81 AABR07067765.1 ENSRNOG00000054379 ENSRNOT00000091519,ENSRNOT00000085744 1 2 2 80 9 61954438 61956559 GATTCCTCGTTCTAGTATAATGCC 59 61954381 61954405 TTATGGTAAGTGTAAGGGTATCCAG 60 NA Rattus norvegicus 81 Adamts12 ENSRNOG00000018865 ENSRNOT00000025693 2 1 1 80 2 61282370 61282388 CCCAAGACACTGGTTTCCT 60 61282432 61292843 AACAGAGCACTCACTCCAG 59 NA Rattus norvegicus 81 Pdrg1 ENSRNOG00000008845 ENSRNOT00000012141 1 1 1 80 3 148490502 148490520 GTGATGGTTTGCTTTGGGA 59 148488502 148490458 GTGCTCCTGATCTTTCTGG 58 NA Rattus norvegicus 81 Mpp6 ENSRNOG00000021579 ENSRNOT00000029332,ENSRNOT00000089973 2 2 2 80 4 79923570 79924450 TTGGATGTTAATCCACAAGCAC 60 79924489 79924509 CTCTGGAGCAGCAATAAACAC 60 NA Rattus norvegicus 81 Csnk2a1 ENSRNOG00000005276 ENSRNOT00000007558 3 1 1 81 3 147743573 147743592 ACATTGTGAAAGACCCTGTG 58 147744097 147744889 TGGTACAATTGCTTGAAGTCTG 59 NA Rattus norvegicus 81 Ncbp1 ENSRNOG00000023605 ENSRNOT00000030825 2 1 1 80 5 61764894 61765994 ATCTTCCTACAGCATCACCAG 60 61766036 61766054 AGGATCTAACTCTGCCGTG 59 NA Rattus norvegicus 81 Setx ENSRNOG00000013491 ENSRNOT00000017984 1 1 1 80 3 7717497 7720233 TCATCTCTATGAAAGCACAGG 58 7720275 7720293 CCACATTCTCTTCCAGCAG 58 NA Rattus norvegicus 81 Cdh17 ENSRNOG00000015562 ENSRNOT00000021612 2 1 1 80 5 25425820 25425840 TAGCGAGGATACTGCTATAGG 58 25425880 25429207 AGTGAATAACTCACAGTCAGG 58 NA Rattus norvegicus 81 Dhrs9 ENSRNOG00000058568 ENSRNOT00000080525 3 1 1 94 3 55638575 55641847 CAATGACAGCTTAAGGCGG 59 55641904 55641923 TTATTGGATCTGCCAGTCCT 59 NA Rattus norvegicus 81 Dcaf4 ENSRNOG00000008399 ENSRNOT00000011378 1 1 1 80 6 107023663 107023793 GCTTCAGTACAGGTTTGTCTC 59 107023832 107023853 CACTGTTGGTCCAATATGACTG 59 NA Rattus norvegicus 81 Coq4 ENSRNOG00000026691 ENSRNOT00000038602 2 1 1 80 3 8351352 8351372 GATCTAAGTAAGCTCCAGAGC 58 8351411 8356056 AGAGACTTTATTCGCATTCAGG 59 NA Rattus norvegicus 81 Pdzrn3 ENSRNOG00000057556 ENSRNOT00000090506 1 1 1 80 4 133720704 133720722 TTGCACATGGATATGCTCG 58 133719890 133720660 CTCATGCTTCTTCTGCTGC 59 NA Rattus norvegicus 81 LOC100364596 ENSRNOG00000026697 ENSRNOT00000039568 1 1 1 105 X 62282368 62282549 GTAAGAAGGCCCAAAGTGC 59 62282616 62282636 TCTTCTTTGTTGGTGGTACAG 58 NA Rattus norvegicus 81 Nt5c ENSRNOG00000003650 ENSRNOT00000004853 2 1 1 81 10 104053266 104053287 TGGGAGACCTCATTGATGAC 59 104053095 104053114 CAGCAGGTGAACAAGATGTG 60 NA Rattus norvegicus 81 Snx5 ENSRNOG00000006077 ENSRNOT00000074606,ENSRNOT00000008934 1 2 2 80 3 138385450 138385470 CTTTCTTCTCACCCTGTTCTC 58 138384536 138385408 CCGCCTAACACTTAGATCC 57 NA Rattus norvegicus 81 Aldh3b1 ENSRNOG00000017512 ENSRNOT00000023789,ENSRNOT00000085312 3 2 2 80 1 219155228 219155247 GCAATTGAGTTCATCAACCG 58 219152521 219155185 CACCTGTTTGATGACCTGG 59 NA Rattus norvegicus 81 Actl6a ENSRNOG00000011553 ENSRNOT00000015460 1 1 1 80 2 119118954 119118974 ACAGAGTTGATGTTTGAGCAC 59 119119016 119121068 ACCATTAGCAAATGCCGTC 59 NA Rattus norvegicus 81 Actl6a ENSRNOG00000011553 ENSRNOT00000015460 3 1 1 80 2 119115574 119115745 CTGCCCTAAGGTTGATTTCC 59 119115787 119115806 CCATCGATCTCCATCATCGT 60 NA Rattus norvegicus 81 S100a1 ENSRNOG00000012410 ENSRNOT00000017000 3 1 1 88 2 189900800 189903086 TCCTGGATGTCCAGAAGGA 60 189900730 189900748 CTCCTGGAAGTCCACTTCC 59 NA Rattus norvegicus 81 RGD1566326 ENSRNOG00000045620 ENSRNOT00000051901 2 1 1 60 3 85545111 85545130 CATCAAGCACTCAAAGAGCA 59 85545150 85545171 CTTCTGATTGTTCTCCTTCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Camkk1 ENSRNOG00000018242 ENSRNOT00000025009 2 1 1 80 10 59604114 59604132 GTAGAGGTGACTGAGGAGG 58 59604174 59604617 CATAGACTTGACCAGGATCAC 58 NA Rattus norvegicus 81 Msh4 ENSRNOG00000010431 ENSRNOT00000014106 1 1 1 80 2 260080207 260080225 CCAACATCAGTGAGTTCCT 57 260078470 260080164 GCTGTGATATCATTCCTGCT 58 NA Rattus norvegicus 81 Mcpt4 ENSRNOG00000024785 ENSRNOT00000027895 3 1 4 81 15 34780560 34780578 TTTAAGGGACAGCTGTGGT 59 34780618 34781195 GACAGTGATTTCTCCATTACAGTG 60 NA Rattus norvegicus 81 LOC100363193 ENSRNOG00000038299 ENSRNOT00000058309 2 1 1 80 X 54294641 54294659 ACCCAATGGTACTTGAGGT 58 54294703 54295350 CCAATCCATTGGCTACAGG 58 NA Rattus norvegicus 81 AABR07030773.1 ENSRNOG00000050974 ENSRNOT00000075199 2 1 1 82 10 103565620 103565639 CCACAGCCAGTTACATTCAG 59 103565682 103568000 AAAGACAATTAGCCGAGTCTG 59 NA Rattus norvegicus 81 Gsto2 ENSRNOG00000012801 ENSRNOT00000017186,ENSRNOT00000076251 1 2 4 80 1 267625418 267625437 ATCTACAGCATGAGGTTCTG 57 267625479 267627770 GATGATTTCATGCCTGATGC 58 NA Rattus norvegicus 81 Ece1 ENSRNOG00000014241 ENSRNOT00000067616,ENSRNOT00000077742 3 2 2 80 5 156301239 156301999 GACAGCAAGAACATAGCCAG 59 156302042 156302060 CATCCATTTCAGGGTGCTC 59 NA Rattus norvegicus 81 Bola1 ENSRNOG00000021185 ENSRNOT00000028767 3 1 1 166 2 198338793 198339082 CAAGTACAAAGCGGATGCT 59 198338645 198338663 CAGTTCCAGTACCTCAGGG 59 NA InUTR Rattus norvegicus 81 Crk ENSRNOG00000025792 ENSRNOT00000006407 3 1 1 60 10 63841134 63841152 AATGCCTACGACAAGACAG 58 63852454 63852473 TCTTCGTAACCTTTACCAGC 58 NA DesignNoJunction Rattus norvegicus 81 S100a6 ENSRNOG00000011647 ENSRNOT00000015612 1 1 1 80 2 190007981 190008290 CTCACCATTGGTGCTAAGC 59 190008331 190008352 TACTTCCTGATCCTTGTTACGG 60 NA Rattus norvegicus 81 Ebf3 ENSRNOG00000016102 ENSRNOT00000021702 3 1 1 80 1 209554207 209554716 GTGGAGTGAGCTGATAACC 58 209554145 209554163 AGGGTCACTTCAACAACTC 57 NA Rattus norvegicus 81 Vom1r22 ENSRNOG00000025949 ENSRNOT00000038190 2 1 1 60 1 61626105 61626123 ATCTCCACAGAGTTGGCAG 59 61626063 61626081 TGGTAGACACTCAGGAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif4e1b ENSRNOG00000025480 ENSRNOT00000037527 1 1 1 80 17 10370730 10371379 TGTTCAAGGAAGGCATCCA 59 10370668 10370686 GTTTGGCAAGACTGAGCAG 60 NA Rattus norvegicus 81 Dixdc1 ENSRNOG00000010260 ENSRNOT00000039045,ENSRNOT00000083102 3 2 2 80 8 55128646 55129703 CAGATACAGACAGAGGAATGC 58 55128586 55128604 TATTGCTGCACAAGTGCTC 59 NA Rattus norvegicus 81 LOC680959 ENSRNOG00000030346 ENSRNOT00000045382 2 1 1 60 X 60391885 60391903 AATTAAGCGAAACTGGCGG 59 60391927 60391945 CTTGAATCTTCTCCGCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-M5 ENSRNOG00000033136 ENSRNOT00000052311 3 1 1 80 20 2039875 2039895 AGGACATTTCCAAGAATTCCC 58 2039666 2039833 AGACATGAGTGCCATCCTC 59 NA Rattus norvegicus 81 Gdnf ENSRNOG00000012819 ENSRNOT00000041288 1 1 1 86 2 56892573 56892591 GTAAGACGCTTCTCGAAGC 59 56892640 56909747 GCATATTGGAGTCACTGGTC 59 NA Rattus norvegicus 81 Zfp18 ENSRNOG00000003981 ENSRNOT00000005518 2 1 1 80 10 52336323 52341959 CTACAGGAGGAACAGTGGAG 59 52342001 52342020 TTTCCCATAGGTTTCCAGCA 59 NA Rattus norvegicus 81 Ssr1 ENSRNOG00000014165 ENSRNOT00000084090,ENSRNOT00000077994,ENSRNOT00000019040,ENSRNOT00000089736 2 4 4 80 17 27498393 27498414 ACCGTAGAAGATCCAATAATCG 58 27498455 27500582 CTCTTCTGCCAAGTCTGTG 58 NA Rattus norvegicus 81 Rn60_X_0634.2 ENSRNOG00000051252 ENSRNOT00000076647 3 1 1 60 X 63329798 63329818 TTTGGGAGCACTTTGATAAGG 59 63329758 63329776 TCAGGGAAGCAGTACTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnbp ENSRNOG00000010239 ENSRNOT00000013884 3 1 1 80 4 119750485 119750504 CCTGACATCTGTTATCGCTG 59 119750269 119750442 GCAGTTATAGCAGGCATCC 59 NA Rattus norvegicus 81 Olr1315 ENSRNOG00000048263 ENSRNOT00000050312 1 1 1 60 8 43470009 43470027 CTATGACCGCTTTGTTGCC 60 43469967 43469988 TCTGTGGCTTATTATGACTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r59 ENSRNOG00000030886 ENSRNOT00000047760 3 1 1 60 1 75166653 75166674 GGGTCATTTCTTAGCATTACCC 59 75166695 75166713 CCCACATCATGATGGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr508 ENSRNOG00000053924 ENSRNOT00000080756 1 1 1 60 3 73838890 73838909 TTGATTTCCTCCCTTGTGGT 59 73838849 73838870 TGAGAACAGCTATGAGAATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr264 ENSRNOG00000054146 ENSRNOT00000089570 2 1 1 60 1 172665150 172665171 TCCTTAAAGTCATCCTCTTCAC 58 172665111 172665130 TTCCCAGACATAGTCAACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apoo ENSRNOG00000046918 ENSRNOT00000073955 2 1 1 80 X 63542291 63544453 TGAAGATCGATGAGCTCTCAC 60 63544494 63544513 CTTCAAGTTGAGTCCTTGGC 59 NA Rattus norvegicus 81 Tipin ENSRNOG00000043068 ENSRNOT00000066973 3 1 1 82 8 69753493 69754151 CCTGATGAAGGATCAGGGA 58 69754194 69754215 GCATCTAGCTTGGGTATATTCC 59 NA Rattus norvegicus 81 Olr514 ENSRNOG00000046997 ENSRNOT00000040055 2 1 1 60 3 73949916 73949936 TTTATCCTCACAGCAGTTCTC 58 73949876 73949895 TTGAGAAAGCCTTGTACCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911373 ENSRNOG00000015798 ENSRNOT00000084658,ENSRNOT00000021299 3 2 2 80 9 64520278 64520298 TAGAGATTGCACAAGATGGAG 58 64513776 64520236 GGTCAGAATAAGGCTCTGG 57 NA Rattus norvegicus 81 Hbq1b ENSRNOG00000028114 ENSRNOT00000035459 3 1 1 81 10 15600506 15600525 TTCTCTGTCTGCTCTCAGTG 59 15600336 15600464 CAGACAGTGGCTAAAGAACTG 59 NA Rattus norvegicus 81 Pxdc1 ENSRNOG00000017093 ENSRNOT00000060143 1 1 1 80 17 30991113 30993373 GAGCATTTGTTTGAGAATGGTG 59 30993413 30993432 CAAGTTGGTGACGTAAGCTG 60 NA Rattus norvegicus 81 Drd4 ENSRNOG00000017927 ENSRNOT00000024137 2 1 1 103 1 214278693 214280198 TTTGTCTACTCCGAGGGTG 59 214280265 214280283 CACAGGTTGAAGATGGAGG 58 NA Rattus norvegicus 81 Drd4 ENSRNOG00000017927 ENSRNOT00000024137 3 1 1 103 1 214278692 214280198 CTTTGTCTACTCCGAGGGTG 60 214280264 214280282 ACAGGTTGAAGATGGAGGC 60 NA Rattus norvegicus 81 Nbeal1 ENSRNOG00000021525 ENSRNOT00000023678 3 1 1 80 9 67106009 67106030 CACTGATGAGATACTGAGTGTG 58 67106070 67106450 ATAATCACACTGCCATCCCT 59 NA Rattus norvegicus 81 Ptchd1 ENSRNOG00000003675 ENSRNOT00000044129 3 1 1 80 X 42595961 42608790 CATGCTAGGTCATGGATTATACG 59 42608827 42608848 TCTTTAACATGTTGGTCCTCTC 58 NA Rattus norvegicus 81 Cyp2j10 ENSRNOG00000042224 ENSRNOT00000079786,ENSRNOT00000045686 1 2 4 80 5 115084462 115086881 AAATGGCAAAGTACCGAGAC 59 115084401 115084419 CAAAGAAGAGGTCCAGGGT 59 NA Rattus norvegicus 81 RGD1566120 ENSRNOG00000026596 ENSRNOT00000036822 1 1 1 80 10 39739421 39739442 ATACAAAGAACACCGAAGACAG 59 39739483 39743057 GCTCCCAATCCAAACAGTC 59 NA Rattus norvegicus 81 Trim13 ENSRNOG00000009075 ENSRNOT00000012035 3 1 1 131 15 41927567 41934488 GGAACAAAGGATGTGATGGAG 59 41934579 41934599 CTCTAAGAGCCCTTCTAAGCA 59 NA InUTR Rattus norvegicus 81 Olr1740-ps ENSRNOG00000059858 ENSRNOT00000072074 2 1 1 60 20 1826592 1826610 TACATGCAGTTCCCACCTC 59 1826634 1826652 GTAGGCGGCAAAGATTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fastkd3 ENSRNOG00000027422 ENSRNOT00000034410,ENSRNOT00000079186 3 2 2 83 1 37736240 37736260 GGCAGTAAACACTTACTTGGA 58 37734735 37736196 ATAGGGAACCTGAACAACCT 58 NA Rattus norvegicus 81 Zfp322a ENSRNOG00000017318 ENSRNOT00000023268 1 1 1 81 17 44026312 44031287 GGTTCTTGTTAAGAAAGCCG 57 44031331 44031349 ATGTAGACAGACGACAGGT 58 NA InUTR Rattus norvegicus 81 Glra1 ENSRNOG00000013588 ENSRNOT00000063889,ENSRNOT00000092189 1 2 2 80 10 40875373 40877726 TCCTCTACAGCATCAGAATCAC 60 40875314 40875335 TACATGTCTGTACATCCATCGG 60 NA Rattus norvegicus 81 Eps15l1 ENSRNOG00000013502 ENSRNOT00000018960 3 1 1 80 16 19142512 19142950 AGTCTTACTACAAGCAGGTGG 60 19142989 19143010 CTGACTTCTTCAGAAACAGTGC 60 NA Rattus norvegicus 81 LOC100910274 ENSRNOG00000048155 ENSRNOT00000050785 1 1 1 60 3 79187127 79187146 TGCTTTGTGCTATTTCTGCT 59 79187169 79187187 CCACCATGAGAAGATTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf215 ENSRNOG00000004940 ENSRNOT00000006827 3 1 1 81 14 84369889 84369988 GTGTAGTCCGAGAGTTGGAC 60 84370030 84370050 AGCTTGGTGACATTTGAAGAG 59 NA Rattus norvegicus 81 Heyl ENSRNOG00000015318 ENSRNOT00000020929 2 1 1 93 5 140930962 140932062 GCGCAGAGGGATCATAGAG 60 140932118 140932137 CTGTTTCTCAAAGGCAGTGG 60 NA Rattus norvegicus 81 Lrp2 ENSRNOG00000056184 ENSRNOT00000082624 3 1 1 80 3 55740179 55740199 GTCTTCTGGAGTGACTTACTG 58 55739213 55740137 ACTGTCATGGACCACTCTC 59 NA Rattus norvegicus 81 Pkp3 ENSRNOG00000015152 ENSRNOT00000020864 1 1 1 80 1 213895616 213895711 CAAGTGTGAGGACAAGAGTG 59 213895752 213895772 GGTGGCATCTCATCATATAGG 58 NA Rattus norvegicus 81 Olr1750 ENSRNOG00000043481 ENSRNOT00000075060 2 1 1 60 20 1945708 1945729 AACTCCTTCTCTTAACCCTCTC 59 1945750 1945768 GAGTGCCCTCTTTACTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myh11 ENSRNOG00000057880 ENSRNOT00000084608,ENSRNOT00000087567 3 2 2 80 10 814391 814410 AAATTTCAGAAGCCCAAGCA 59 814451 816473 TGCATTATAGTCCACCTTCCC 60 NA Rattus norvegicus 81 Gmds ENSRNOG00000017605 ENSRNOT00000023691 2 1 1 80 17 33843969 33843988 GTAGGCAGATGTAAGGAGAC 57 33844030 33937475 TAGAAAGTCCACTTCAGTCG 57 NA Rattus norvegicus 81 Mcrs1 ENSRNOG00000054838 ENSRNOT00000082470 3 1 1 80 7 140912351 140912370 ACTTCTCAGATGCAGAGGAC 59 140911911 140912038 CTGTCAGCTCATGTTCCAG 58 NA Rattus norvegicus 81 Foxn2 ENSRNOG00000040110 ENSRNOT00000061693 1 1 1 80 6 12188478 12188499 TGCGTTGATCCAGAATATAAGC 59 12188537 12193959 TAAAGAAGCACTTTGTGGAGAG 59 NA Rattus norvegicus 81 Ctsw ENSRNOG00000027096 ENSRNOT00000037404 1 1 1 80 1 220846492 220846510 ACGGCTACAGGAAGAAGAC 59 220846099 220846448 TGGCCAAACTCTTCCTCTG 60 NA Rattus norvegicus 81 Fkbp3 ENSRNOG00000004629 ENSRNOT00000006531 1 1 1 80 6 86812583 86814270 CAAGGTTATCAGAGGATGGGA 59 86812523 86812544 CATTCTGGTTCAATCTCCAGTC 59 NA Rattus norvegicus 81 Arhgef9 ENSRNOG00000007733 ENSRNOT00000076965,ENSRNOT00000063861,ENSRNOT00000084678,ENSRNOT00000042654 1 4 5 80 X 64307683 64311422 CCAAGACCACAGTGATTACAG 59 64307623 64307641 TTGCGTTCATTGATCTGCT 58 NA Rattus norvegicus 81 Meis2 ENSRNOG00000004730 ENSRNOT00000077091,ENSRNOT00000051638 1 2 2 97 3 107754150 107754170 TGACCTCGTGATTGATGAGAG 60 107745382 107754091 AGGATGAAGGGTTGTGGTC 59 NA Rattus norvegicus 81 Pcp2 ENSRNOG00000000993 ENSRNOT00000001313 3 1 1 107 12 2173670 2173688 CTCATGGATATGCTGGCCA 60 2172551 2173599 CTGCATTCCATCCTTGGGA 60 NA Rattus norvegicus 81 Gpx3 ENSRNOG00000052564 ENSRNOT00000079830 3 1 1 80 10 40254100 40254121 ATTTCCAGCTCTTTGAGAAAGG 59 40254162 40254491 GAGGGCAGGAGTTCTTCAG 60 NA Rattus norvegicus 81 LOC100910646 ENSRNOG00000045695 ENSRNOT00000067009 1 1 1 80 X 74846208 74846227 GTTGCTCAGAAGACTACAGC 59 74844931 74846165 TCTGAAGACTCTCCAGCTC 58 NA Rattus norvegicus 81 Glp1r ENSRNOG00000001152 ENSRNOT00000001527,ENSRNOT00000079509 1 2 2 80 20 9620344 9620363 TTCACAGAGCTCTCCTTCAC 60 9621874 9624412 CATCTGGACCTCATTGTTGAC 59 NA Rattus norvegicus 81 Glp1r ENSRNOG00000001152 ENSRNOT00000001527,ENSRNOT00000079509 2 2 2 80 20 9621870 9624408 CTTTGTCAACAATGAGGTCCA 59 9624450 9624468 TCCCTCTGGATGTTCAAGC 59 NA Rattus norvegicus 81 Sec24d ENSRNOG00000014872 ENSRNOT00000064809 3 1 1 80 2 227465481 227465499 GTCCTTTACCTCCTGGACC 59 227465542 227477175 GTCCCGGAAATCTTTGAGGA 60 NA Rattus norvegicus 81 Lox ENSRNOG00000014426 ENSRNOT00000074226,ENSRNOT00000019844,ENSRNOT00000083881 2 3 3 83 18 47505055 47505425 TTCTAAAGGTCAGTGTAAACCC 58 47504993 47505011 TGTAGCGAATTTCACAGCG 59 NA Rattus norvegicus 81 Olr288 ENSRNOG00000021485 ENSRNOT00000029171 1 1 1 60 1 212679460 212679483 CACAGAGAACTTGGTCATTATCAC 60 212679423 212679441 CATAGGCTTGTGCAGTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mob1a ENSRNOG00000059474 ENSRNOT00000090987 1 1 1 80 4 115033137 115036299 CCTTCTAAGATTGGTGTCCC 58 115036342 115036360 ATAAACCCTGAAGAGACGC 57 NA Rattus norvegicus 81 Cgn ENSRNOG00000020952 ENSRNOT00000028440 2 1 1 80 2 195927474 195928215 ATGGTGCAGTTCAAATCCAC 59 195927413 195927431 CTTCATATGGTCCGCACTG 58 NA Rattus norvegicus 81 Iqcb1 ENSRNOG00000038868 ENSRNOT00000066616 1 1 1 80 11 66865832 66869911 ATGCAACTAAGGGTGAAGAG 58 66865771 66865789 CTCCCAATAGCCAGAAGAG 57 NA Rattus norvegicus 81 Fat2 ENSRNOG00000012575 ENSRNOT00000058665 3 1 1 80 10 40621221 40623211 CATTCTGACAGTTATGGTGCG 60 40621161 40621180 CCATCCTCCACATGAATGGT 60 NA Rattus norvegicus 81 Fbxw17 ENSRNOG00000030027 ENSRNOT00000044073 1 1 1 80 17 15085053 15085073 TTGAGTTCCGTGTGAAATCTG 59 15084704 15085012 GCTGATCTATCGTTCCTGTG 58 NA Rattus norvegicus 81 AABR07054522.1 ENSRNOG00000047718 ENSRNOT00000072211 3 1 1 84 3 158944522 158944543 CTGGTTTGGATTGTCCAGAG 59 158944457 158944475 CCAATGTTTCCCACCACTG 59 NA Rattus norvegicus 81 Atg16l2 ENSRNOG00000019413 ENSRNOT00000026286 1 1 1 80 1 166411735 166413449 TAGTGCCGGCTTATAACCA 59 166411673 166411692 CCTTTGGTTCTGACTTCAGC 59 NA Rattus norvegicus 81 Exosc10 ENSRNOG00000010719 ENSRNOT00000014629 2 1 1 80 5 165380404 165380425 ATCCCTAGATGAACTTGTGGAG 59 165380464 165380796 TATGAGTGGTGCTCTAAGTCC 59 NA Rattus norvegicus 81 Mir425 ENSRNOG00000035484 ENSRNOT00000053607 2 1 1 60 8 117354828 117354846 TGGAATGACACGATCACTC 57 117354870 117354888 GACACGATATTCCCGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spice1 ENSRNOG00000039024 ENSRNOT00000086286,ENSRNOT00000064385 2 2 2 80 11 61279410 61279430 GCTGGAATAAATCAAGACCCT 58 61278299 61279372 GTCTACTTCATTAAGAGCCTGAG 59 NA Rattus norvegicus 81 Ubtf ENSRNOG00000020937 ENSRNOT00000064283,ENSRNOT00000048418 2 2 2 80 10 90253004 90253025 AAGAACATGACTAAGCTTCGAG 59 90252855 90252963 GTCTTCCTCTGACTCCGAC 59 NA Rattus norvegicus 81 Plekho2 ENSRNOG00000029242 ENSRNOT00000042633 3 1 1 80 8 71099307 71104584 AGGGAACAAGGTCAGTGAC 59 71099245 71099266 CCTTCATTGAGAGCTTTGATCC 60 NA Rattus norvegicus 81 Medag ENSRNOG00000000906 ENSRNOT00000001205 1 1 1 80 12 6721308 6740291 CAGTTACATCAAGAGATACGTGG 59 6721250 6721269 ATGGGTTTGCTCAGTATCGT 60 NA Rattus norvegicus 81 Rmdn3 ENSRNOG00000011690 ENSRNOT00000016356 2 1 1 80 3 110953222 110960888 AGTGAAGGAGGTTATACGACAG 59 110953163 110953183 ATCTTCAGCATCCTCACTCTC 59 NA Rattus norvegicus 81 LOC100911440 ENSRNOG00000049944 ENSRNOT00000077776,ENSRNOT00000025240 1 2 2 80 1 214412030 214412048 TCGGCTTCAGTCACTTGAG 60 214411876 214411987 TGTCTCCAGATCTTCCTTGC 60 NA Rattus norvegicus 81 Cdh20 ENSRNOG00000014556 ENSRNOT00000019907 2 1 1 80 13 24889355 24893095 TTGCTATGGAAATGAACAACCC 60 24893132 24893154 GAGCATTGTCATTCACATCTAGG 60 NA Rattus norvegicus 81 G3bp1 ENSRNOG00000013186 ENSRNOT00000018149 2 1 1 80 10 40834675 40834694 AAGAAAGACAGCAGTCACCA 60 40834735 40836761 CCTCCAAGTCATTGCTAACAG 59 NA Rattus norvegicus 81 G3bp1 ENSRNOG00000013186 ENSRNOT00000018149 3 1 1 80 10 40829003 40829021 AACTCTTCCTATGCCCACG 60 40829065 40830190 CCTGTGGATTTCCTTCTGC 59 NA Rattus norvegicus 81 Prepl ENSRNOG00000007326 ENSRNOT00000082353,ENSRNOT00000061826,ENSRNOT00000009660 1 3 3 80 6 8333845 8333863 CTGCATAGTGGTGAAGCTC 58 8332136 8333801 TCCTTCACCCATTCAAAGC 58 NA Rattus norvegicus 81 Eaf2 ENSRNOG00000002350 ENSRNOT00000003208 3 1 1 80 11 66882224 66882246 CCTCTTGTGAAGGAAATCTTGAG 60 66882280 66900535 GTGGAGTTGAACCTTCTATATTTGG 60 NA Rattus norvegicus 81 RGD1306750 ENSRNOG00000042018 ENSRNOT00000067909 3 1 1 85 4 166801497 166801517 GATACCAGCAACCAAGAAGAG 59 166800339 166801453 CCCATTTACTTTCTGACATTGC 58 NA InUTR Rattus norvegicus 81 Tcerg1 ENSRNOG00000018849 ENSRNOT00000025467,ENSRNOT00000086979 3 2 2 80 18 36835813 36835832 CTAATATGCCACCAATGCCT 58 36835875 36838896 GCATGAATGGTGGTCTCTG 59 NA Rattus norvegicus 81 Tex2 ENSRNOG00000013659 ENSRNOT00000055114 2 1 1 80 10 94758772 94758790 CACAGATCCCACAAAGCTC 59 94741502 94758732 CATCCATCCCTTCAGTATTTCAG 59 NA Rattus norvegicus 81 RGD1564149 ENSRNOG00000012714 ENSRNOT00000017141 3 1 1 80 20 12928442 12932592 GTATTAAGGAAGACATGGTGGAG 59 12928384 12928405 TAAGCATCATGTTCTGCATGAG 59 NA Rattus norvegicus 81 Catsper3 ENSRNOG00000011374 ENSRNOT00000015163 1 1 1 80 17 8925257 8925275 AGAGTCAAGTCCAGCTCAC 59 8923492 8925219 CTTATCCCTTCTCTTATATTGGCTG 59 NA Rattus norvegicus 81 RGD1561931 ENSRNOG00000021589 ENSRNOT00000035653 3 1 1 62 X 74968377 74968396 AAGCTGAGGACTAACTTCAG 57 74955705 74968353 TCAAATGTTGTCCAACAGGA 58 NA DesignRelaxed, InUTR Rattus norvegicus 81 Dleu7 ENSRNOG00000009181 ENSRNOT00000065838 3 1 1 85 15 45369235 45369254 GTAAGTGTGACTGCCAACTG 59 45361357 45369188 ATTCCACGCTATCCTGTAGG 59 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000052387 3 1 5 227 1 80531419 80533392 ATCGAGCTTCGAGACTGTG 60 80531026 80531226 AGACACTGTCTTTGGAATCTC 58 NA DesignRelaxed Rattus norvegicus 81 RGD1304929 ENSRNOG00000022760 ENSRNOT00000039518 2 1 1 80 15 57098069 57098090 CCCATCTTCAACCTGTTAAGTG 59 57098131 57098445 CTCCTGGATGTCCTTCACC 60 NA Rattus norvegicus 81 Spint1 ENSRNOG00000012811 ENSRNOT00000088870,ENSRNOT00000017223 3 2 2 80 3 111057714 111057960 GTCAGTGTTAAGAGAAACCATCC 60 111057999 111058018 TCTTGTCAGTTGGAACAGGT 59 NA Rattus norvegicus 81 Lefty2 ENSRNOG00000060325 ENSRNOT00000080574,ENSRNOT00000088654 2 2 2 228 13 99173785 99174499 CAGAACTTTCGAGAGGTGG 58 99174691 99174709 CATCCTCACGGACTCTCAG 59 NA DesignRelaxed Rattus norvegicus 81 Lefty2 ENSRNOG00000060325 ENSRNOT00000080574,ENSRNOT00000088654 3 2 2 229 13 99173784 99174498 CCAGAACTTTCGAGAGGTG 58 99174691 99174709 CATCCTCACGGACTCTCAG 59 NA DesignRelaxed Rattus norvegicus 81 Fhl3 ENSRNOG00000007541 ENSRNOT00000010007 1 1 1 86 5 142693726 142693744 TACTGTGTTCCCTGCTACG 59 142693792 142693908 AAACAGTTCCCTTGAATCGTG 59 NA Rattus norvegicus 81 Fam101b ENSRNOG00000006674 ENSRNOT00000008982 1 1 1 113 10 64197031 64199660 GGAAATAAAGTATACCTCCTCAGTC 59 64196942 64196960 ATACAGGTGACTGTCTGGC 59 NA Rattus norvegicus 81 Pithd1 ENSRNOG00000010873 ENSRNOT00000014458 3 1 1 84 5 154325202 154331791 GATGAGACTGTACAAGAACATTCC 60 154325141 154325161 ATCTCGGTTCAGACTAAAGGT 59 NA Rattus norvegicus 81 Egf ENSRNOG00000053979 ENSRNOT00000089504 3 1 1 80 2 68877600 68877618 TACCAGACGATGACAGGAC 59 68877659 68882306 CGCAGTCATCTTCATAGTTCAG 59 NA Rattus norvegicus 81 Neb ENSRNOG00000006783 ENSRNOT00000059461 3 1 1 80 3 37679085 37679703 TCAGCCTCCTTCAATACCAG 59 37679024 37679042 GCAGTATTTCTGGCGTGTC 59 NA Rattus norvegicus 81 Phlpp1 ENSRNOG00000002821 ENSRNOT00000003840 2 1 1 80 13 26280171 26280192 AGAGCCAGACTTACTACATCTG 59 26280233 26303201 GTGATGCAACCTTGGAGAC 59 NA Rattus norvegicus 81 Snx8 ENSRNOG00000001258 ENSRNOT00000001696 2 1 1 81 12 16385122 16385140 CCATGTCTACCTGCCTCTC 59 16385185 16388195 CTTGCTCATCTCCTTGTGC 59 NA Rattus norvegicus 81 Chid1 ENSRNOG00000019351 ENSRNOT00000026215,ENSRNOT00000044390 1 2 2 80 1 214057524 214061510 AAACATGTAGGCCTCATTCAC 59 214057464 214057482 GATGACCAGAATGACCAGC 58 NA Rattus norvegicus 81 Aqp3 ENSRNOG00000009797 ENSRNOT00000013803 2 1 1 80 5 57425495 57425513 CAGCTGGTATCTTTGCCAC 59 57425047 57425451 CTGCTGTGCCTATGAACTG 59 NA Rattus norvegicus 81 Ppp1cb ENSRNOG00000004612 ENSRNOT00000006190 2 1 1 80 6 23563750 23563770 TGAAATCTTTCTTAGCCAGCC 59 23561537 23563714 GTATACTGTCCATGAATATCTCCAC 59 NA Rattus norvegicus 81 S100a3 ENSRNOG00000012008 ENSRNOT00000078351,ENSRNOT00000016034 1 2 2 89 2 189995076 189995094 TACAAGATCTGCCAGTCGG 59 189995556 189995574 ATTGTAGTCACACTCCCGG 59 NA DesignNoJunction Rattus norvegicus 81 Nucks1 ENSRNOG00000047287 ENSRNOT00000075674,ENSRNOT00000079707 2 2 2 80 13 48703494 48703515 GGTTAAGAAGTCCAAACCTGAG 59 48703556 48704587 ACTGGACTTGGTGTCACTG 60 NA Rattus norvegicus 81 Brms1l ENSRNOG00000008249 ENSRNOT00000076169,ENSRNOT00000010948 1 2 3 91 6 76701666 76702744 AATTAGGAAGGCAATGGCT 57 76705063 76705081 CAGATCTAGCACTGTGCAG 58 NA Rattus norvegicus 81 Pof1b ENSRNOG00000004795 ENSRNOT00000006415 2 1 1 80 X 84129787 84133866 CTAAACACAGATCAGGAATGCT 59 84129728 84129746 TGGTGAGTGGATGATCTGG 59 NA Rattus norvegicus 81 Olr396 ENSRNOG00000025931 ENSRNOT00000030984 3 1 1 60 3 15749707 15749727 AGAGTACTGTGTTTGAGTTCC 58 15749749 15749767 ACATTCTGATGCTCTGGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1304728 ENSRNOG00000014027 ENSRNOT00000018808 2 1 1 80 10 58742807 58742827 ATTTGAAGGATCTCCCATCAC 58 58741085 58742765 AATGGACATCTGAAGCCTG 58 NA Rattus norvegicus 81 LOC302228 ENSRNOG00000047403 ENSRNOT00000071967 2 1 1 60 14 96300845 96300863 CTGCCAACAAATCCCTCTC 59 96300884 96300905 GTCCGTAGACACATTCAATTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sstr5 ENSRNOG00000018834 ENSRNOT00000080944 3 1 2 90 10 14847948 14848770 CAAGATGAAGACAAGAGTGGG 59 14847878 14847896 TTCAAATCCTGCTGGTCTG 58 NA Rattus norvegicus 81 Adprh ENSRNOG00000027260 ENSRNOT00000038439 2 1 1 96 11 64866740 64867422 CAACACTGGTCCTACTTCGA 60 64867481 64867499 CAAAGGGTTTCGGGAAGAC 59 NA Rattus norvegicus 81 Rn60_5_0814.13 ENSRNOG00000051116 ENSRNOT00000076260 3 1 1 65 5 77898556 77898574 GAACCTGAGCAGAGAAACG 59 77898509 77898527 CATCGAGGTTGGATTGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ceacam18 ENSRNOG00000022701 ENSRNOT00000038229 2 1 1 80 1 99563717 99563735 CAGGCAACTACACTGTCCA 60 99563775 99566308 CTCTCAACTTTATGATCTCGAGC 59 NA Rattus norvegicus 81 AABR07040288.1 ENSRNOG00000047560 ENSRNOT00000049969 1 1 1 60 X 96991682 96991701 TTTCTTGGGTTCTTGTTGCT 58 96991835 96991853 ACTGGGTCATCTGGATGTC 59 NA DesignNoJunction Rattus norvegicus 81 Adamts19 ENSRNOG00000019577 ENSRNOT00000026543 2 1 1 80 18 54026672 54027797 GCAAGTGTCCTGGAATATGTG 59 54027839 54027857 TATAGGCCTGACATTGCCA 59 NA Rattus norvegicus 81 Wbp1 ENSRNOG00000008720 ENSRNOT00000082996,ENSRNOT00000039966 1 2 2 85 4 113952880 113953039 ATGAACTCTGGTGGTTCTG 57 113952813 113952831 GAGTTTAGCTCTTCGGTGG 58 NA Rattus norvegicus 81 Magea4 ENSRNOG00000054784 ENSRNOT00000087679 3 1 1 62 X 152196416 152196570 CATAAAGGTATATGACTTGGTGGAC 60 152196588 152196608 GTAGTGAATGCCTTCATTTGG 58 NA DesignNoJunction Rattus norvegicus 81 Wrnip1 ENSRNOG00000017040 ENSRNOT00000023332 1 1 1 80 17 32948960 32950181 TCTCAGCAGGACACTTTCC 59 32948898 32948918 GAAGGAAGGATTCTCAGTGGT 60 NA Rattus norvegicus 81 Ccdc152 ENSRNOG00000039473 ENSRNOT00000060492 3 1 1 80 2 53117344 53117363 GCAAGAGCTCAGACTAAGTC 58 53116411 53117301 ATGCTGAAGCTTCCTTCTG 58 NA Rattus norvegicus 81 Ace ENSRNOG00000007467 ENSRNOT00000074007 2 1 2 80 10 94194017 94194790 CGCAGTATAATGGGTACAAAGAC 60 94194830 94194848 GTTCCAGGTCTTCCTCCAG 59 NA Rattus norvegicus 81 Cdc27 ENSRNOG00000005904 ENSRNOT00000007963 2 1 1 80 10 92561991 92562012 GAAATGCATTTCCAGAAAGCAC 59 92559141 92561950 TGCATGCTGAACTACTCCA 59 NA Rattus norvegicus 81 Ccdc167 ENSRNOG00000000531 ENSRNOT00000000639 1 1 1 80 20 8370007 8370763 CCTCGAAATATGAGAAGGAGC 58 8369947 8369965 CTATGAAGATGGCCACCGA 59 NA Rattus norvegicus 81 Phyhipl ENSRNOG00000000274 ENSRNOT00000000299,ENSRNOT00000058151 1 2 2 86 20 19352584 19357846 GACTATGTTAGAGATCACTATGGG 58 19357891 19357909 TTTCCCACTGATGGGAGAG 59 NA Rattus norvegicus 81 Olr1274 ENSRNOG00000047291 ENSRNOT00000073665 3 1 1 60 8 43043836 43043856 ACCCATGTACTTCTTCCTCAG 59 43043796 43043816 AATGACAGTAGATTGGCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0814.15 ENSRNOG00000051164 ENSRNOT00000076437 1 1 1 86 5 77836232 77836251 CGATGTTCTTCAGGAAAGGT 58 77831715 77836183 TTGTTGGACCTTTGCACTG 59 NA Rattus norvegicus 81 Rn60_5_0814.15 ENSRNOG00000051164 ENSRNOT00000076437 3 1 1 88 5 77836232 77836251 CGATGTTCTTCAGGAAAGGT 58 77831713 77836181 TCTTGTTGGACCTTTGCAC 59 NA Rattus norvegicus 81 Rasgrf1 ENSRNOG00000014025 ENSRNOT00000082757,ENSRNOT00000018794 1 2 2 80 8 97386334 97386357 GAAGGCAGATAAGAATGAAAGGAC 60 97386391 97390662 GAAGCGATCAAGTTACTGATATGG 60 NA Rattus norvegicus 81 Rasgrf1 ENSRNOG00000014025 ENSRNOT00000082757,ENSRNOT00000018794 2 2 2 80 8 97399102 97399121 ATCTCCCATATTATCCGCGA 58 97399162 97404690 GTACTGAGTTACCTTTGGCTG 59 NA Rattus norvegicus 81 LOC688282 ENSRNOG00000045889 ENSRNOT00000074899 3 1 1 82 10 106800187 106803759 CAGACAGAAGGCATCACCA 60 106803803 106803823 CGGATGTCACAGGTTATAAGC 59 NA Rattus norvegicus 81 RGD1306072 ENSRNOG00000025796 ENSRNOT00000030658 3 1 1 84 19 25283138 25283394 CAGTCTCAATCGACTGATTATGAG 59 25283437 25283455 AGTCAGGTAAGGCAGAGAC 58 NA Rattus norvegicus 81 Orc6 ENSRNOG00000024043 ENSRNOT00000039467 1 1 1 80 19 27462194 27462213 TGGATTAAGAGACCTGGCTG 59 27461765 27462154 GACTCATAGCTTTGCAGTATCC 59 NA Rattus norvegicus 81 Pet100 ENSRNOG00000050169 ENSRNOT00000071928 3 1 1 81 12 2170676 2171441 TGTTTCGGATGTCACTCTACC 60 2171483 2171502 ACATAGTCCTCGAACCACTC 59 NA Rattus norvegicus 81 Ren ENSRNOG00000002937 ENSRNOT00000003951 2 1 1 80 13 50507672 50507691 GGGACTGAATTCACCATCCA 60 50506861 50507630 GATTCCACCCACAGTTACCA 60 NA Rattus norvegicus 81 Rn60_5_0814.25 ENSRNOG00000051326 ENSRNOT00000077037 3 1 1 60 5 77475057 77475077 TTTGAATGTACTGAGTGTGGG 58 77475017 77475039 TCTGATGGATAACTAGGTGTGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Exoc3l1 ENSRNOG00000015641 ENSRNOT00000021015 3 1 1 80 19 37248644 37249746 TTACAAGCAGTACCAGCTG 58 37248582 37248600 CAGGTTCACATATGCCTCC 58 NA Rattus norvegicus 81 Ankrd52 ENSRNOG00000030597 ENSRNOT00000047462 1 1 1 80 7 2808854 2809203 TGAAGAAGGTCACACTCCA 58 2809247 2809265 ATGGTGGAGAGGATCAAGG 59 NA Rattus norvegicus 81 Dgkh ENSRNOG00000010065 ENSRNOT00000058079 3 1 1 80 15 60843984 60844003 AGACTCTGTTGCAAATCACC 59 60840793 60843942 CAGAGTATCTTGGCAGACGA 59 NA Rattus norvegicus 81 Slc5a4 ENSRNOG00000049734 ENSRNOT00000072183 1 1 1 80 20 13442932 13442952 GATTTACACTGACACCCTCCA 60 13440753 13442890 CCGACTTCAACAAATGCGT 60 NA Rattus norvegicus 81 Vom2r25 ENSRNOG00000046431 ENSRNOT00000071085 1 1 1 80 8 3862504 3862524 CCAAAGAACCAGAAATTGTCC 58 3861048 3862464 GCATACAGACTGAGGAATCTC 58 NA Rattus norvegicus 81 Optc ENSRNOG00000003059 ENSRNOT00000064556 3 1 1 60 13 50744438 50746110 AAAGGATGTACGTCGAATGGA 60 50744398 50744416 ATGAGGTTCTGAGGGAAGG 58 NA DesignNoJunction Rattus norvegicus 81 Aig1 ENSRNOG00000010753 ENSRNOT00000046539 1 1 1 80 1 7999770 8038455 CTTCATTGATCTGGTTATCCAGG 59 7999712 7999730 CTGCCTCTGGTCAGAAGAC 60 NA Rattus norvegicus 81 Ap2a2 ENSRNOG00000019534 ENSRNOT00000064254,ENSRNOT00000085125 3 2 2 80 1 214605093 214605773 GCAAGCTCAGATGTACAGAC 59 214605816 214605834 TGTTCCGACAGCAATTCAC 59 NA Rattus norvegicus 81 Ralgds ENSRNOG00000010219 ENSRNOT00000013809,ENSRNOT00000084092 1 2 2 80 3 7124790 7125260 CCATGAAGGACTATCTATATGGGAG 60 7125566 7125584 ACTTGATCTGGGCGATGAC 60 NA Rattus norvegicus 81 Gxylt1 ENSRNOG00000005234 ENSRNOT00000058349,ENSRNOT00000081104 2 2 2 82 7 134475291 134480539 TCTTGCCATTGATACTGAAAGG 59 134475230 134475248 GATGTCATCAACAGGTCGC 59 NA Rattus norvegicus 81 Tnfrsf10b ENSRNOG00000038483 ENSRNOT00000077758,ENSRNOT00000066128 2 2 2 82 15 51461132 51461150 ACAGAACTCAGAGTTCGCC 60 51461195 51462873 GATCAACTTCAGGGCATCAG 59 NA Rattus norvegicus 81 Cd300ld ENSRNOG00000042251 ENSRNOT00000066523 3 1 2 83 10 103545482 103546089 TGAACCTTCAGCCAGATCC 59 103546135 103546154 CATATTGGCACTGCACTGTC 60 NA Rattus norvegicus 81 RGD1559578 ENSRNOG00000024233 ENSRNOT00000037415 2 1 1 80 10 98093706 98093724 ATCAACATGCACAAGTGCT 58 98091276 98093662 CAACCTTCGCATCTCTGTG 59 NA Rattus norvegicus 81 Ccdc109b ENSRNOG00000009433 ENSRNOT00000012587 3 1 1 80 2 230201339 230201358 ACGTTCTTCCTTACGTTTGC 59 230200177 230201299 GGATTCGTAAGTGTAGTTCTGC 59 NA Rattus norvegicus 81 Pdk2 ENSRNOG00000004172 ENSRNOT00000005641 2 1 1 80 10 82850703 82850723 TCATGAAAGAGATCAACCTGC 58 82844009 82850661 TCTGGACATACCAGCTCTG 59 NA Rattus norvegicus 81 Slc27a6 ENSRNOG00000058193 ENSRNOT00000077443 3 1 1 80 18 53660227 53662709 ACACTTTCAGGTGGAAAGG 58 53662750 53662771 CTTCCTGTATAAAGTCCAACCT 58 NA Rattus norvegicus 81 Ttc32 ENSRNOG00000049088 ENSRNOT00000073663 1 1 1 80 6 34155199 34159854 GTCACAGGAGCAAATGTAGC 59 34159895 34159915 AATCAACGCTGAAGTACTTGG 59 NA Rattus norvegicus 81 Armc7 ENSRNOG00000042691 ENSRNOT00000004843 3 1 1 60 10 104036918 104036937 GGACTTATTCCTCGATTCGC 59 104036957 104051004 CCCAATAGCAAACTTGATGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Smarcc2 ENSRNOG00000031135 ENSRNOT00000028244 3 1 1 80 7 2877974 2877993 CTCCAGTTTCAGGAAGAGGT 59 2878033 2879573 ATCTAGGAAACATTTGATCGGC 59 NA Rattus norvegicus 81 Zmym1 ENSRNOG00000013855 ENSRNOT00000064015 1 1 1 81 5 145114414 145114432 CGAAAGCCATGTGTTACCG 60 145111080 145114370 TGGGTGGTTTAGTGGATGTC 60 NA Rattus norvegicus 81 Gm2a ENSRNOG00000052219 ENSRNOT00000078910 1 1 1 80 10 40443865 40443883 TGTCGTTCCTGGAGATGTG 59 40443927 40449013 GTGAGCTCCACCTTCTGAG 60 NA Rattus norvegicus 81 Flrt3 ENSRNOG00000004874 ENSRNOT00000006454 1 1 1 83 3 134685278 134685297 CGAGAGCAAGAGAAAGAACC 59 134684607 134685233 CTTCAATATCAGGGCCACAG 59 NA Rattus norvegicus 81 Nfia ENSRNOG00000006966 ENSRNOT00000087089,ENSRNOT00000086628,ENSRNOT00000080577,ENSRNOT00000004017 2 4 4 80 5 116637620 116652350 AAGAGTGTCACAAACACCA 57 116652391 116652412 CTGTAGTATGAGGAACTTTCCA 57 NA Rattus norvegicus 81 Rabl6 ENSRNOG00000016795 ENSRNOT00000065410 1 1 1 80 3 2808600 2808621 AGAATGACTCAGATCTCTTTGG 58 2807877 2808562 GTTTGCTGTCTTTATCTTCCTC 58 NA Rattus norvegicus 81 Samt3 ENSRNOG00000029010 ENSRNOT00000040231 1 1 1 80 X 54554462 54555957 TATACAAAGGTTTGCTGTGGC 59 54555996 54556017 TCAAACACCAAAGCTATTAGGC 59 NA Rattus norvegicus 81 Rn60_X_0637.3 ENSRNOG00000051241 ENSRNOT00000076267 2 1 1 60 X 63102328 63102347 TTTCCGTCTTCCACTACGAG 60 63102287 63102305 GTCTTGGCAAGTGAGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kiss1 ENSRNOG00000047481 ENSRNOT00000076506,ENSRNOT00000077054 2 2 2 143 13 50532092 50532110 TTCCAGAATGATCTCGCTG 57 50529857 50529875 GCATTAACGAGTTCCTGGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rps24 ENSRNOG00000010189 ENSRNOT00000064788,ENSRNOT00000013588 2 2 2 80 16 758274 758292 ATGACACGGTAACCATCCG 60 758333 758434 GAAGGACATCAATGACCATCTG 59 NA Rattus norvegicus 81 Olr12 ENSRNOG00000033009 ENSRNOT00000047063 1 1 1 60 1 149578600 149578619 CTATTCTTCGCATCCGTACC 58 149578559 149578580 TGAGATGAGCATGTAGAGAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Htr5b ENSRNOG00000002549 ENSRNOT00000003441 2 1 1 105 13 37491662 37491681 GGAAGATATACAAAGCCGCC 59 37480871 37480889 GTCTCAGACTCCTGAGGTG 59 NA DesignNoJunction Rattus norvegicus 81 Plb1 ENSRNOG00000026037 ENSRNOT00000061176 2 1 1 80 6 25432405 25432573 GGAAGAACATGCTAGAACCTG 59 25432345 25432364 GGTTTGGACACATGATAGGG 58 NA Rattus norvegicus 81 Prdm6 ENSRNOG00000030486 ENSRNOT00000047755 1 1 1 80 18 48521100 48521120 AGTGCTTTAAGACTTTCACGC 60 48521162 48530860 CACACTGGTAGGGTCTGTC 59 NA Rattus norvegicus 81 RGD1310951 ENSRNOG00000016780 ENSRNOT00000022866 2 1 1 83 5 76926907 76984315 CATTCCAGCTTATTCTACTAAGCTC 60 76984356 76984374 ACTGCACTGGTACACAGAC 60 NA Rattus norvegicus 81 Mamstr ENSRNOG00000024580 ENSRNOT00000029167,ENSRNOT00000029220 2 2 2 83 1 101625821 101625839 CAAGAGTCTCCAGTCCCTC 59 101625886 101626072 TAAGCTCTGAGACCGTCAG 59 NA Rattus norvegicus 81 Adgrg6 ENSRNOG00000011411 ENSRNOT00000030511 1 1 1 80 1 8628547 8628565 AGCCATTTCTCCCTCTGTC 59 8627503 8628503 TCGTTACAAAGGCATGTCC 58 NA Rattus norvegicus 81 Adgrg6 ENSRNOG00000011411 ENSRNOT00000030511 3 1 1 80 1 8599718 8600374 CAACTCAGATTGGAGTAAGACAG 59 8599660 8599682 GAGCTTGACGATAAAGATTTCCC 60 NA Rattus norvegicus 81 Irgm ENSRNOG00000031138 ENSRNOT00000045545 2 1 1 82 10 34218917 34221543 CTGGATCAGGGTTTGAGGAG 60 34218854 34218872 AGCAAGAAGGTCCTGTGTC 60 NA InUTR Rattus norvegicus 81 LOC681193 ENSRNOG00000048562 ENSRNOT00000071028 2 1 1 98 1 214454218 214454236 CCGGGATATACCACCACTG 59 214453948 214453966 CGAACTGGGATGATCATGG 58 NA DesignNoJunction Rattus norvegicus 81 Dnali1 ENSRNOG00000024957 ENSRNOT00000029388 1 1 1 80 5 143061549 143061567 TCAACTTCCTGTGTCCCAG 59 143060304 143061505 TTCTACCCACTCCCTTGGA 60 NA Rattus norvegicus 81 Reg1a ENSRNOG00000006486 ENSRNOT00000057869 1 1 1 90 4 109500106 109500125 CTACAAATCCTGGGACACTG 58 109500175 109500379 TCTCCATTTCTTGTATCCTGAG 57 NA Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000075971,ENSRNOT00000035976,ENSRNOT00000036233,ENSRNOT00000073253 3 4 5 82 5 101801092 101855462 GGGAAGCTGTTAAGAGTCTC 58 101855505 101855525 GAGATGTCTATTGAGCTGACG 58 NA Rattus norvegicus 81 LOC100910150 ENSRNOG00000033015 ENSRNOT00000040657 1 1 1 80 18 52465397 52487495 TATCAGGGCTGGTTCTTGC 60 52487537 52487557 GACAGACACAAAGTCACACTG 60 NA Rattus norvegicus 81 Mtf1 ENSRNOG00000050240 ENSRNOT00000072841 2 1 1 80 5 142335046 142335065 TGCCAAGAAACATTGAAGGT 58 142335106 142350646 GGTACCGCTTTACTTCTTTCC 59 NA Rattus norvegicus 81 Emp2 ENSRNOG00000002664 ENSRNOT00000003615 2 1 1 80 10 5455770 5460794 CAACCATTGACAATGCCTG 58 5460838 5460856 TACAGTTTGTGCTGTTGGT 58 NA Rattus norvegicus 81 Olr257 ENSRNOG00000051603 ENSRNOT00000090373 1 1 1 60 1 172551289 172551307 CCAAAGTCCACCTTCTCCA 59 172551247 172551267 TTACCACCATGTAGAACACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ly6h ENSRNOG00000007334 ENSRNOT00000056554,ENSRNOT00000076014,ENSRNOT00000076009 1 3 3 161 7 116606958 116606976 TACTGGCCTTGCTTCTCTG 59 116606140 116606393 AATGATCCTTCCTGCTGCT 59 NA Rattus norvegicus 81 Fam186b ENSRNOG00000054250 ENSRNOT00000082521 3 1 1 81 7 140950889 140950907 TTGGTGACTCCCACTTCAG 59 140949966 140950845 CCGAGATATCCTCCTGAGTC 59 NA Rattus norvegicus 81 Fbxo16 ENSRNOG00000014003 ENSRNOT00000018762 1 1 1 80 15 48705772 48705790 TTCAAGCAGCAGTTTCGAG 59 48705833 48723100 CAGGGACATCAATGACTGTG 59 NA Rattus norvegicus 81 Espnl ENSRNOG00000024717 ENSRNOT00000033629 3 1 1 81 9 98480220 98481807 CCAGAAGATCAGGACCAGAG 59 98481851 98481869 GAGTCTGCGAATACCTCCA 59 NA Rattus norvegicus 81 Mettl5 ENSRNOG00000008469 ENSRNOT00000011303 2 1 1 80 3 56102332 56104158 AGATTATCGCAGAGCTTCGA 59 56101799 56101817 GGTCCACTTCAATGTCCAC 59 NA Rattus norvegicus 81 Twist2 ENSRNOG00000020355 ENSRNOT00000027597 3 1 1 290 9 98924514 98924534 CAATAAGATGACCAGCTGCAG 60 98967980 98967998 AAGGATGTGAACCTGGCTC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rn60_X_0614.1 ENSRNOG00000029559 ENSRNOT00000049652 3 1 1 60 X 60761762 60761784 CAAGGGAAGGTAATCATTTGGTC 60 60761804 60761822 CCTGGAAATGTATTGCCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0636.1 ENSRNOG00000051274 ENSRNOT00000076406 2 1 1 60 X 62926161 62926179 TGCAAGGAGATCTGCTCTG 60 62926119 62926137 TGCCAAAGTGACAGTAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cntn6 ENSRNOG00000032517 ENSRNOT00000051645,ENSRNOT00000088070 3 2 2 80 4 136889459 136891533 GGGCTATGAGGTCTTATACTG 57 136891574 136891593 GTTGTGACATTTCCACTGAC 57 NA Rattus norvegicus 81 Rn60_5_0814.28 ENSRNOG00000051270 ENSRNOT00000076132 2 1 1 60 5 77396723 77396744 ATTTGAATGTACTGAGTGTGGG 59 77396684 77396705 CTGATGGATAACTAGGTGTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr227 ENSRNOG00000049285 ENSRNOT00000073451 1 1 1 60 1 148863128 148863146 CCTGCTGATCCTTTGTTCC 59 148863170 148863188 TGCTGATGGAATCTTGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0654.1 ENSRNOG00000051187 ENSRNOT00000076870 1 1 1 60 X 64487266 64487286 GGTAAGTGAAGCCTATCTGGT 59 64487226 64487244 TTTGGCATGGATAGCACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Otud7b ENSRNOG00000042068 ENSRNOT00000078288,ENSRNOT00000046739 3 2 2 80 2 198291941 198291961 TGATCAAACTTGCCTCAAGTG 59 198292001 198292409 CTTCTGAACTCTCCACTCCTC 60 NA Rattus norvegicus 81 MGC116202 ENSRNOG00000015625 ENSRNOT00000020927 1 1 1 80 19 37240470 37240488 AGGAACCAATGCCAATGAG 58 37240326 37240426 TAATGATGCCAACTGCCTG 58 NA Rattus norvegicus 81 LOC100911988 ENSRNOG00000045903 ENSRNOT00000045739 1 1 1 60 8 18062782 18062803 AACCTCATCATTATCTTGGCTG 59 18062743 18062764 AGAAGTACATTGGAGTATGGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adam28 ENSRNOG00000014518 ENSRNOT00000058715 2 1 1 80 15 50370947 50370967 AGCCATATTTGTGGTGATTGC 60 50361760 50370905 GGTGGTAGCCTCTGAACTC 60 NA Rattus norvegicus 81 Gpr153 ENSRNOG00000010718 ENSRNOT00000014444 1 1 1 80 5 169460400 169460832 ACTCAGACAACGAGACCAG 59 169460875 169460894 AGTCACCTCCATAGTCAAGG 59 NA Rattus norvegicus 81 Rn60_6_1181.1 ENSRNOG00000027960 ENSRNOT00000039048 3 1 1 92 6 107572771 107575371 CCCAAGGACACCTTAGGTC 59 107572697 107572715 TTCAGGAAAGAGGCCATGG 60 NA Rattus norvegicus 81 Lrrc61 ENSRNOG00000008234 ENSRNOT00000010864 1 1 1 92 4 78187268 78188680 CACGTGAGGTATCACTGGG 60 78188736 78188754 GTGAGCAGCTCTAGGAGTG 60 NA InUTR Rattus norvegicus 81 Use1 ENSRNOG00000016619 ENSRNOT00000022650 1 1 1 84 16 19763264 19763576 TGGAGAAGTATGTGGGTGC 59 19763699 19763717 TCACTGATCACTTCCGAGG 59 NA Rattus norvegicus 81 LOC100909613 ENSRNOG00000050749 ENSRNOT00000048907 1 1 1 60 3 103462913 103462932 CCTGGGATTCACAAACTCCT 60 103462950 103462973 GAACATTGAGGATACCAGAAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clnk ENSRNOG00000051169 ENSRNOT00000076730,ENSRNOT00000088197 2 2 2 80 14 76757761 76759582 GGAATCAGAATATGCAGATACACG 60 76759621 76759639 GAGACAGAAGGCTTGGGAG 60 NA Rattus norvegicus 81 Dtymk ENSRNOG00000018904 ENSRNOT00000025644,ENSRNOT00000085029 2 2 2 105 9 100929097 100929115 AAATCGGCAAGCTTCTGAG 59 100927054 100929029 ATTAATGGCACTTGTTCCCA 58 NA Rattus norvegicus 81 Sumf1 ENSRNOG00000006813 ENSRNOT00000009008 2 1 1 80 4 140204682 140220223 TCGCTCTCACTAAGATGGT 58 140204620 140204638 CTCCATCCTGCTTGATCTG 58 NA Rattus norvegicus 81 Hsf4 ENSRNOG00000015253 ENSRNOT00000065013 1 1 1 80 19 37227962 37227980 TAATCCAGTGCCTGTTTGG 58 37228023 37228480 CATCTAGCATTAGGGACAGC 58 NA Rattus norvegicus 81 Olr44 ENSRNOG00000018512 ENSRNOT00000024965 2 1 1 60 1 167732464 167732483 GCCCAGATGTTCTTTATCCA 58 167732423 167732442 CCATTGATAACAGGATGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aip ENSRNOG00000022289 ENSRNOT00000000599,ENSRNOT00000091542 3 2 2 81 1 219363605 219364108 ATCGAGATGCTGAAGGTGG 60 219363542 219363560 CTGCCTTTGCTTTCTCCTC 59 NA Rattus norvegicus 81 AABR07054332.1 ENSRNOG00000005116 ENSRNOT00000006859 2 1 1 109 3 148283639 148283661 TGGTGTTAAGTCCAAGGAGG 59 148283733 148283751 GCTTGCCAATCTTGTTCCC 60 NA Rattus norvegicus 81 Parp4 ENSRNOG00000051196 ENSRNOT00000076460 1 1 4 80 15 36871625 36874454 CCACGGAGTTCATTATGTCTG 59 36874494 36874514 ACAGGAAACTAAGATAGCGGA 59 NA Rattus norvegicus 81 Prickle2 ENSRNOG00000012364 ENSRNOT00000016628 2 1 1 80 4 124301640 124301660 AGATGGGAAGATCTACTGTGG 59 124298456 124301601 GCAAAGATGATCTCATCACAGG 60 NA Rattus norvegicus 81 Bbs5 ENSRNOG00000007127 ENSRNOT00000009396 3 1 1 80 3 55888359 55892942 ATAATGGAGACAGAGGCAGAC 59 55892981 55893002 AAAGATTGACTCTGGGTAATGC 59 NA Rattus norvegicus 81 Olr392 ENSRNOG00000018112 ENSRNOT00000024351 3 1 1 60 2 209582447 209582465 AACCATGCTCTCCACACTC 60 209582405 209582423 AGACCTCCAGAAAGGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564730 ENSRNOG00000030045 ENSRNOT00000047012 1 1 1 60 9 99365038 99365057 GAGGTATGGACCTACAAGCA 59 99364997 99365015 CAAGCTTGTCCTTGGACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Maged1 ENSRNOG00000006756 ENSRNOT00000009870,ENSRNOT00000076311,ENSRNOT00000076858,ENSRNOT00000084632 1 4 5 100 X 63806376 63806394 AGATGTGGCCCTTCTTCAG 59 63806046 63806217 CTCTCAGCATTTCTGAGCG 59 NA Rattus norvegicus 81 Maged1 ENSRNOG00000006756 ENSRNOT00000076938,ENSRNOT00000009870,ENSRNOT00000084632 2 3 5 61 X 63803806 63803825 ATTGAGTTTGAGCTGCTGAC 59 63803764 63803782 ATCCTGGACCAAGGATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ano4 ENSRNOG00000006841 ENSRNOT00000089269,ENSRNOT00000009084 2 2 2 80 7 29546266 29546285 CTGGAGTTCTGGAAGAGACG 60 29537543 29546227 TATTTCTTCCTCCTCTTCTTCCC 59 NA Rattus norvegicus 81 Zfp174 ENSRNOG00000007655 ENSRNOT00000010059 3 1 1 88 10 11933232 11933250 TCTCATGAGCAGCTGAGTC 59 11929888 11933181 ATTCTGGAGGACTCTGTCTC 58 NA Rattus norvegicus 81 Mtpap ENSRNOG00000016578 ENSRNOT00000022462 1 1 1 81 17 56057609 56058158 GACTGCCAACAATAGTATTGC 58 56057548 56057569 CAAAGCTCTTACTCTTGAATCC 57 NA Rattus norvegicus 81 Bicc1 ENSRNOG00000000614 ENSRNOT00000000754,ENSRNOT00000080846 3 2 2 80 20 18921689 18921709 AGAAACCATCAAGGAACTGAG 58 18921751 18927694 AATGAGGAGCCCTCATAGG 58 NA Rattus norvegicus 81 LOC100911679 ENSRNOG00000047767 ENSRNOT00000070843 3 1 1 81 2 194558554 194558572 TGGAGTGGAAGTCAATGGT 59 194558616 194718242 AAGCACTCTTGCATAGAAGC 59 NA Rattus norvegicus 81 AC095078.1 ENSRNOG00000015799 ENSRNOT00000021167 3 1 2 82 4 117584812 117589364 GTAGTTGAGGGTTCAGGGA 58 117584748 117584766 ATAAGGAGCCATGGGAGAC 59 NA InUTR Rattus norvegicus 81 Mir291b ENSRNOG00000056886 ENSRNOT00000092137 2 1 1 68 1 64537911 64537929 GAAGTTGGAACACAGGGTC 58 64537861 64537879 AAATGGATGCACTTTCCCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctxn1 ENSRNOG00000001057 ENSRNOT00000001399 3 1 1 215 12 2534363 2534384 GAGTCCCAAGAAAGAGAAAGAG 59 2534963 2534981 CAACAGAACCAACACCACG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Vom2r59 ENSRNOG00000045674 ENSRNOT00000042692 3 1 1 95 12 4004148 4019987 ATTACAGAGACTCCCAGGTC 58 4020044 4020063 GCAGTCAAAGCAACATATCC 58 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000092100 1 1 11 80 6 98912435 98912455 GTTGCTGACATCATAGAAGGA 58 98912494 98920915 CTTCTCAATATGAAAGTGCAGG 58 NA Rattus norvegicus 81 Cdk5rap3 ENSRNOG00000048747 ENSRNOT00000071719 3 1 1 80 10 84785629 84786215 ACACCTATTTAGTGGAACTCTC 57 84785570 84785588 TGGCAATCTGCTTCTTCAG 58 NA Rattus norvegicus 81 Bard1 ENSRNOG00000014960 ENSRNOT00000087870,ENSRNOT00000020414 3 2 2 80 9 78315481 78315499 ACTGCTCAGCAAACTTGAG 58 78314753 78315440 GGAACAATGACATGAGTTACTG 58 NA Rattus norvegicus 81 Rn60_5_0814.30 ENSRNOG00000051103 ENSRNOT00000076250 1 1 1 60 5 77359413 77359431 AACTCTAGATGTGCTGCTG 57 77359371 77359390 TTCTCCTGTCTCAACTTTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnt1 ENSRNOG00000017283 ENSRNOT00000061773,ENSRNOT00000023542 1 2 2 80 3 3363174 3363192 CACCAGAACACCCTTTCCT 60 3363232 3363348 GATGAGGTACACAATATCGTTGG 59 NA Rattus norvegicus 81 Muc20 ENSRNOG00000001776 ENSRNOT00000002418 1 1 1 92 11 71227331 71227349 TAACCAAGACCACAGCCTC 59 71227402 71232623 CATTTATACCTGGATCGTGCTC 59 NA Rattus norvegicus 81 Zfp800 ENSRNOG00000007662 ENSRNOT00000010223 1 1 1 80 4 55521367 55521388 TTTGTTACAGCAACCAGTACAG 59 55509961 55521327 AGTTGTTTGGTTCCTGATCG 59 NA Rattus norvegicus 81 Dkkl1 ENSRNOG00000020686 ENSRNOT00000028082 1 1 1 80 1 101208972 101208990 TCAGGAACAGAACCAGGAG 59 101208785 101208929 TGGTTGTCAGTCATCTTGTC 58 NA Rattus norvegicus 81 AABR07047232.1 ENSRNOG00000048316 ENSRNOT00000075288 2 1 1 81 5 24926180 24926896 GCTTCCTGGAGGAGATCAG 59 24926117 24926138 GTCCTCCAAACGCTTAATTCTC 60 NA Rattus norvegicus 81 Rn60_5_0814.17 ENSRNOG00000051345 ENSRNOT00000076612 3 1 1 60 5 77794969 77794988 AATCTAGATGTGCTGCTGTG 58 77794928 77794948 ATTCTCCTGTCTCAACTTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hipk2 ENSRNOG00000007034 ENSRNOT00000064891 2 1 1 80 4 66470436 66470454 ATGAGACAGCAACCAACCA 60 66464192 66470393 ACAGGTGGAGACATTTCTCG 60 NA Rattus norvegicus 81 Nr1i2 ENSRNOG00000002906 ENSRNOT00000003934 3 1 1 81 11 65053973 65055397 ATATCCCACTTCAGGGAGC 59 65055442 65055460 ACCTCAGGATGCACATCTC 59 NA Rattus norvegicus 81 Map2k1 ENSRNOG00000010176 ENSRNOT00000013933 2 1 1 96 8 69141770 69143618 CCTACATGTCGCCTGAGAG 60 69141692 69141710 CTTCCAACTGCCATCTCCA 60 NA Rattus norvegicus 81 Rab19 ENSRNOG00000009030 ENSRNOT00000012280 2 1 1 84 4 67174020 67174038 ATTCGAGTCTGTCCCTCAC 59 67174086 67175293 TGATTTGTTCCCGATCAGC 58 NA Rattus norvegicus 81 Scgb2a2 ENSRNOG00000020305 ENSRNOT00000072584 3 1 2 80 1 225828093 225828111 GCTGTGAAGCAATTCAAGC 58 225825562 225828049 TATTGCCTCCATCATCACG 57 NA Rattus norvegicus 81 Fgfbp1 ENSRNOG00000003095 ENSRNOT00000004128 1 1 1 60 14 71649310 71649328 TCTTTCCTTCTCCTGGCTG 59 71649351 71649370 CATTCTTGGCTGTCTTTCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam134b ENSRNOG00000010589 ENSRNOT00000063951,ENSRNOT00000089551,ENSRNOT00000089805 2 3 4 80 2 78252695 78252957 CTTTGTCCTAAGATTAGCCTCAC 59 78252995 78253015 AGTCCAAGAGACTTCTGACAC 60 NA Rattus norvegicus 81 Nudcd2 ENSRNOG00000060914 ENSRNOT00000086814 2 1 1 80 10 25893313 25895545 TCCAGAAAGAGAATCCTGGG 59 25895587 25895606 TTGAGAAATCTGGTCCACCT 59 NA Rattus norvegicus 81 Srfbp1 ENSRNOG00000014808 ENSRNOT00000020030 2 1 1 86 18 47475654 47475672 AGCTGATTCCAGAAGCCAG 60 47475721 47476803 GTTCTCTGGGATCCCTTCTG 60 NA Rattus norvegicus 81 Mrgpre ENSRNOG00000054917 ENSRNOT00000077911 1 1 1 60 1 216971013 216971035 GGAATCCCTTCTCCATCTATCTC 60 216970975 216970993 CAGCAGAGGAAGATGAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vsig2 ENSRNOG00000033490 ENSRNOT00000042679 1 1 1 80 8 40010414 40010434 ATAACTTTGCCTTGGAGTGGA 60 40010473 40010756 CGTTGGTGAAGTACAGAATAGG 59 NA Rattus norvegicus 81 Tars2 ENSRNOG00000057194 ENSRNOT00000087052 3 1 1 80 2 197873313 197873333 GAGATCATAACTGCTGCACAG 59 197873151 197873273 GTGGTTATCCTTGAAGAGCTG 59 NA Rattus norvegicus 81 Sec61a1 ENSRNOG00000013743 ENSRNOT00000018454 1 1 1 80 4 120464740 120464831 TTAGTATGCTGCCAGATTCC 58 120464679 120464697 CAGAATCACTCGCATCCAG 58 NA Rattus norvegicus 81 Insr ENSRNOG00000029986 ENSRNOT00000041155,ENSRNOT00000067448 1 2 2 80 12 1717038 1720299 AGATGCCACCAATCCTTCC 60 1716976 1717000 GGCTTCCACTTTAAGATAATCTGAG 60 NA Rattus norvegicus 81 Igtp ENSRNOG00000027008 ENSRNOT00000077764 3 1 2 70 10 43633055 43637223 GCCACAAATGATACGGAAGG 59 43637256 43637274 TAAACAATGGCGGCTTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Rbm26 ENSRNOG00000009836 ENSRNOT00000013255,ENSRNOT00000013297 2 2 2 80 15 89270277 89270295 CTGGCATGGAATAAACCCG 59 89268523 89270235 TTCCTGAAATTCCTCTTCGTC 58 NA Rattus norvegicus 81 Ankdd1a ENSRNOG00000015554 ENSRNOT00000073571,ENSRNOT00000033512,ENSRNOT00000075734 1 3 3 80 8 71038935 71039768 AATGGACATTAGGCAGCAG 58 71038873 71038891 GCAATGAGGAGCATCTCTG 58 NA Rattus norvegicus 81 Mrto4 ENSRNOG00000017979 ENSRNOT00000024326 2 1 1 80 5 157815870 157815890 CTGTCTGACTATGAAGTGTGC 59 157815698 157815830 CTCATACCCAAACAGCTTCAG 59 NA Rattus norvegicus 81 AABR07058745.1 ENSRNOG00000050884 ENSRNOT00000071423 2 1 1 80 7 136053994 136054013 AGGGACAACTGGAATCTCAG 59 136054053 136062286 TTTGTTGAAGTTGTAGCCTCTG 59 NA Rattus norvegicus 81 Dynlrb2 ENSRNOG00000012450 ENSRNOT00000016713 1 1 1 80 19 49019905 49019923 TGGAGGAAACCCTCAAGAG 59 49019967 49027295 GGATTGGAATGCCTTCTGC 59 NA Rattus norvegicus 81 LOC100912259 ENSRNOG00000048722 ENSRNOT00000071597 3 1 1 60 4 170104331 170104349 CGAGAAGCATCTGACTGAG 58 170104289 170104307 CTCAGCGATAGCATGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ercc4 ENSRNOG00000048121 ENSRNOT00000004563 1 1 1 82 10 2023254 2024276 GGTCAGAATTCAGGTTGGC 59 2023190 2023208 TCTGGGACACGGTAAACTC 59 NA Rattus norvegicus 81 Gsk3b ENSRNOG00000002833 ENSRNOT00000003867,ENSRNOT00000077612 2 2 2 80 11 65119824 65135284 GGCGAGAAGAAAGATGAGGT 60 65119763 65119781 ATAGTGTCTGGCGACTCTG 59 NA Rattus norvegicus 81 Fam221a ENSRNOG00000009447 ENSRNOT00000012677,ENSRNOT00000067125 3 2 2 81 4 79035879 79035897 TTTCAGTCATGGACCATCC 57 79035942 79037284 CTTGGACCTACTGCTAGTG 57 NA Rattus norvegicus 81 Kat7 ENSRNOG00000022664 ENSRNOT00000031252,ENSRNOT00000082160 2 2 2 81 10 83097338 83098168 CTCCATCAAAGAAATTAGCCAGG 60 83097279 83097297 CTTGAGCATCTGAAGGGCT 60 NA Rattus norvegicus 81 Ggct ENSRNOG00000034084 ENSRNOT00000043752 3 1 1 82 4 85188004 85189385 TCTCTGGATGAACAAGAAGG 57 85187941 85187959 ATGTCCTTCCCTTGTTGAG 57 NA Rattus norvegicus 81 Fgf21 ENSRNOG00000020990 ENSRNOT00000028490 2 1 1 80 1 101595858 101596396 TCTCTATGGATCGCCTCAC 58 101595796 101595815 TGGTACACATTGTATCCGTC 58 NA Rattus norvegicus 81 Zeb1 ENSRNOG00000017863 ENSRNOT00000024336,ENSRNOT00000046013 2 2 2 80 17 54670697 54670717 TACACCTTTGCATACAGAACC 58 54668772 54670656 CTGTGTCACATGTCTTTGCT 59 NA Rattus norvegicus 81 Dlx3 ENSRNOG00000004278 ENSRNOT00000005797 1 1 1 94 10 82938402 82938422 AAGTCGGAATATACCTACGGG 59 82938478 82939540 TCCTCTTTCACCGACACTG 59 NA Rattus norvegicus 81 Sec11a ENSRNOG00000011029 ENSRNOT00000015218 2 1 1 80 1 142740017 142740036 CGAGGCCTCTATAAACAAGG 58 142734268 142739974 AATGTACGGAACAAACCCT 57 NA Rattus norvegicus 81 Pdap1 ENSRNOG00000000990 ENSRNOT00000001310 2 1 2 81 12 11247503 11247522 GACGACTAAGAAGGTGACAC 58 11247563 11249142 CTGCTTCTCTATTTCTTCTCGT 58 NA Rattus norvegicus 81 Rnaseh2b ENSRNOG00000009192 ENSRNOT00000012231 2 1 1 80 15 45453281 45453299 ATGTTAATGTTGGAGCCCG 58 45453341 45455798 CATAGTCTTCTTCCTTGTCCC 58 NA Rattus norvegicus 81 Arf1 ENSRNOG00000060229 ENSRNOT00000080028 2 1 1 92 10 45564484 45564503 AATATCAGCTTCACCGTGTG 58 45564225 45564429 GAAGATCAAGCCTTGGGTG 59 NA Rattus norvegicus 81 Plch1 ENSRNOG00000009955 ENSRNOT00000057724 1 1 1 80 2 154283532 154292304 AAGCTGCATTATAGTAACGGG 58 154283472 154283490 CTCCTTCAACAGTGAGTCC 58 NA Rattus norvegicus 81 Gal3st4 ENSRNOG00000001375 ENSRNOT00000001855 1 1 1 80 12 19590121 19590140 CTCAGAGTTCGGATACCCAG 59 19584475 19590081 TGACCTGAAGTACCTCTTTGAG 60 NA Rattus norvegicus 81 Vom1r74 ENSRNOG00000054932 ENSRNOT00000086592 2 1 1 60 4 87815423 87815441 AGTCTATCTTGGTGCTGGT 58 87815465 87815483 GAGATGATGAAGTCCACCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc9 ENSRNOG00000048848 ENSRNOT00000075700 1 1 1 80 1 78215200 78215420 CCTCGTGCCTATAGTGACC 59 78215138 78215156 GGACTGAGAGGATTTGGGA 58 NA Rattus norvegicus 81 Gpr137 ENSRNOG00000021145 ENSRNOT00000028707 3 1 1 81 1 222195350 222195488 AACGTATCTGACCAGGCAG 60 222195287 222195305 CCCACACGAAGAGGATGAG 60 NA Rattus norvegicus 81 Gsdmd ENSRNOG00000007728 ENSRNOT00000075917 3 1 1 80 7 116893148 116893168 CAGCTACTAGTAGACATCGGG 59 116893210 116893302 CAGACCCTGCTCTAGTGAG 59 NA Rattus norvegicus 81 Wnt9a ENSRNOG00000003066 ENSRNOT00000058327 2 1 1 65 10 45681294 45681312 AACCTCAAGTACAGCAGCA 59 45681341 45681360 CTCGCAGATCCTGCTAGAC 60 NA DesignRelaxed Rattus norvegicus 81 Lyrm9 ENSRNOG00000037204 ENSRNOT00000056192 3 1 1 84 10 66108655 66108673 TTACTTACTGCGTTGCTGC 59 66108721 66110744 AACTTGGAAACTCTGCCTG 58 NA Rattus norvegicus 81 Pipox ENSRNOG00000008798 ENSRNOT00000012154 3 1 1 80 10 64961677 64961697 AGTAGGGCTCTTAGACAAGAC 59 64961738 64962048 AGCTGACGAATTACATGCTG 59 NA Rattus norvegicus 81 RGD1564606 ENSRNOG00000029670 ENSRNOT00000048598 2 1 1 60 2 38230934 38230953 TATCCTCGAAAGAGTGCACC 60 38230973 38230994 GGAATTTGATGATGGCATAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nid2 ENSRNOG00000000341 ENSRNOT00000000383,ENSRNOT00000082196 2 2 2 80 15 4923230 4923251 CCTTTATCCCAGCAAATTTCAC 58 4921856 4923189 AGGATGTCACGACTGAGTC 59 NA Rattus norvegicus 81 Rn60_X_0691.3 ENSRNOG00000051099 ENSRNOT00000075910 1 1 1 60 X 68175197 68175216 AACACTTCCTTCGTTGAGAC 58 68175156 68175176 GGACTACAAACACTACTCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr331 ENSRNOG00000030201 ENSRNOT00000044115 2 1 1 60 1 229480366 229480385 CTTCCTCAGCAATCTGTCCT 60 229480405 229480426 CATCTTTGGGACTGTAGAAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc9b1 ENSRNOG00000042985 ENSRNOT00000031348 1 1 1 80 2 240568890 240570018 TTTCCAAGTAGAGATCAGGAGAG 59 240570057 240570076 GCCTAAGACAGCAGAAACAC 59 NA Rattus norvegicus 81 Fech ENSRNOG00000018053 ENSRNOT00000024328 1 1 1 80 18 59964488 59969486 CAACCAGAAAGGAGGAAGC 59 59964426 59964445 GTCTTGAACTTCTCCAAGGG 58 NA Rattus norvegicus 81 Raph1 ENSRNOG00000014722 ENSRNOT00000036194 1 1 1 80 9 67341274 67341293 AGTGACAAGGAAGATCAGGA 58 67333764 67341234 ATCCAAACTCTGAGTAAGTCTG 58 NA Rattus norvegicus 81 Rn60_X_0674.1 ENSRNOG00000051153 ENSRNOT00000076788 3 1 1 60 X 66474537 66474557 CACCATAAACTGCTTAGACCC 59 66474577 66474597 TTCCATGATGCCAAAGTTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Anapc16 ENSRNOG00000000576 ENSRNOT00000000702 2 1 1 80 20 29547560 29553095 AGAGATACTAGAAGATGGCTCTG 59 29547502 29547521 ACCTGTTTAAGTGTGGATGC 59 NA Rattus norvegicus 81 Gemin5 ENSRNOG00000002645 ENSRNOT00000044299 3 1 1 80 10 43581016 43583033 TCCATTAGATACAAGCTGCC 58 43580955 43580974 ATCTTCATTTCCAAGAGCCA 57 NA Rattus norvegicus 81 Klhl26 ENSRNOG00000020088 ENSRNOT00000027241 3 1 1 99 16 20724127 20726387 TACTTTAGGGCCATGTTCAC 58 20726449 20726467 AATCGATGATGTGACGCAG 58 NA Rattus norvegicus 81 Rn60_X_0650.1 ENSRNOG00000057091 ENSRNOT00000086663 3 1 1 97 X 64915724 64915742 CTACCGGGATGATAACGGA 58 64914925 64914943 TGGGTAGGCATTCTTCGTC 60 NA DesignNoJunction Rattus norvegicus 81 Rarb ENSRNOG00000024061 ENSRNOT00000033048 2 1 1 80 15 10246874 10255695 GGGTAAATACACCACGAATTCC 60 10255735 10255754 GCCAGCTCACTGAATTTGTC 60 NA Rattus norvegicus 81 Dnal1 ENSRNOG00000042333 ENSRNOT00000076055,ENSRNOT00000036430 2 2 2 91 6 107607362 107607381 ATAGAGAAGATGGACGCGTC 60 107609343 107609799 GAAAGCTTCCCTCATGATTGAC 60 NA InUTR Rattus norvegicus 81 Olr774 ENSRNOG00000046079 ENSRNOT00000046265 1 1 1 60 3 102995663 102995682 CTTGTTGCTTCTCATCTCCT 58 102995622 102995642 ACCTGAAGAATGTTTCCAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pgpep1 ENSRNOG00000019639 ENSRNOT00000026597 2 1 1 107 16 20529831 20530220 ATGCTGGCAGATACCTGTG 60 20530291 20530309 CAGCATTGTAAGGCTTGCC 60 NA Rattus norvegicus 81 Aqp1 ENSRNOG00000011648 ENSRNOT00000087191,ENSRNOT00000015692 1 2 2 140 4 85560617 85560635 TTGAGATCATTGGCACCCT 59 85560739 85561013 CAGTGTAGTCAATGGCCAG 58 NA Rattus norvegicus 81 RGD1564804 ENSRNOG00000027455 ENSRNOT00000009044 1 1 1 82 5 138277334 138277355 AGCAAATGCTACTAACAAGCTG 60 138276155 138277291 CATCTTCCAGCACCTTCCT 59 NA Rattus norvegicus 81 Cd28 ENSRNOG00000010283 ENSRNOT00000013701 2 1 1 113 9 67566736 67566754 TCAGACGTCTCCTAAGCTG 59 67566829 67571163 TTCCTTCTGCTATTTGTCCAG 58 NA Rattus norvegicus 81 Efcab2 ENSRNOG00000042201 ENSRNOT00000084718,ENSRNOT00000029723 2 2 2 122 13 96304072 96335197 AGAGTACAGAGGCAATAGTGG 59 96379673 96379691 ATCGAATGTACCCAGTGGG 59 NA Rattus norvegicus 81 AABR07030122.1 ENSRNOG00000030217 ENSRNOT00000049614 3 1 1 60 10 68588887 68588906 TTATGCCCGAGATGAAACTG 58 68588926 68588947 TGCTTTGTACACATAAGCACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr92 ENSRNOG00000022857 ENSRNOT00000029980 3 1 1 80 14 100381555 100381577 ATAGATGGTATAGGTGGACTTGG 59 100381615 100383714 CACCTTTACAGTTCCATCTCG 59 NA Rattus norvegicus 81 Dzip1 ENSRNOG00000010311 ENSRNOT00000038596 3 1 1 80 15 104157385 104158581 TTCTCCAAGGACTATGAAATGC 59 104157326 104157346 CTTCTCTTCCTCTTTCCATCG 58 NA Rattus norvegicus 81 Riok1 ENSRNOG00000014049 ENSRNOT00000084417,ENSRNOT00000018936 3 2 2 80 17 27449253 27449271 CTGGTACTTGGACGACTCG 60 27446471 27449209 TGTCGATTTGCCTGATGGT 60 NA Rattus norvegicus 81 Ube2e1 ENSRNOG00000008794 ENSRNOT00000011653 2 1 1 80 15 8175743 8175764 TATGAAGGTGGAGTCTTCTTCC 59 8175803 8176467 TGTACGAAACGTAACCTTTGG 59 NA Rattus norvegicus 81 Etv1 ENSRNOG00000006867 ENSRNOT00000065396,ENSRNOT00000091263 3 2 2 85 6 58469732 58471089 GGCTCATGATTCAGAAGAACTC 59 58481276 58481296 CATCATTGTCAGGTACCTGAG 58 NA Rattus norvegicus 81 Fcer1a ENSRNOG00000009177 ENSRNOT00000058090,ENSRNOT00000083561 2 2 2 80 13 91732554 91735120 TGAACGTGATGCAAGAGTG 59 91732492 91732510 GGCATCTGATGTCAAAGGA 58 NA Rattus norvegicus 81 RGD1563307 ENSRNOG00000028984 ENSRNOT00000030832 3 1 1 60 1 89645973 89645991 TGCTGACGACTTAGGAGAG 59 89645931 89645951 ATAGTACTGCAAGGGATTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Coro6 ENSRNOG00000014496 ENSRNOT00000019759,ENSRNOT00000086706 1 2 2 80 10 62694592 62694611 CTGGGTCATATCTTCACCAC 58 62694135 62694549 TTCTTCGAAGTTGTTCGGG 58 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000075869,ENSRNOT00000090799 1 2 6 80 5 47931466 47933460 TCTACTGAAACAGCCTATTCC 57 47933501 47933520 TTGTCTCCAACTGAAATCCA 57 NA Rattus norvegicus 81 Eva1b ENSRNOG00000024818 ENSRNOT00000064972 3 1 1 63 5 144160738 144160756 GATGACTCCAGCCTGTCAG 60 144160782 144160801 TCTCAGGGTTAGCTAGGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dll4 ENSRNOG00000014011 ENSRNOT00000018970 3 1 1 81 3 111137278 111137297 ACATTATGAGTGCCAACCAG 58 111137338 111137713 AAGACATATAGGCTGATCACAG 58 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000051634,ENSRNOT00000085050,ENSRNOT00000090937,ENSRNOT00000087524,ENSRNOT00000090936,ENSRNOT00000082545 1 6 8 80 20 1960695 1960715 TCTATGTTCACCAAGATCTGG 57 1960549 1960653 CTCTAGGGTCTTCCTCCAC 58 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000051634,ENSRNOT00000085050,ENSRNOT00000090937,ENSRNOT00000087524,ENSRNOT00000090936,ENSRNOT00000082545,ENSRNOT00000089485 2 7 8 61 20 1960488 1960506 GATGTCCTGACTCTTGCCA 59 1959900 1960464 AAAGTCTCAATGGTTCGGTG 59 NA DesignNoJunction Rattus norvegicus 81 Ms4a1 ENSRNOG00000020945 ENSRNOT00000028433 3 1 1 80 1 227431321 227431339 TCTTCCAGAAGCTCGTGAC 60 227430004 227431279 GAACCACATTAGATTTGGGCC 60 NA Rattus norvegicus 81 Npvf ENSRNOG00000010806 ENSRNOT00000014437 3 1 1 82 4 80393423 80393442 CAGTGAATTGCTCTATGCCA 58 80391865 80393378 TGAACACCCGTTTCCTAGG 59 NA Rattus norvegicus 81 Sdr9c7 ENSRNOG00000004459 ENSRNOT00000005919 2 1 1 80 7 71161701 71162590 CTCTGATAGCATCAGGCGA 59 71162631 71162652 ATGGATGTCTTGTAGTTTCCTG 58 NA Rattus norvegicus 81 Acot6 ENSRNOG00000029637 ENSRNOT00000058101 3 1 1 80 6 107585400 107585418 TTTGAGCCAAGTGCATCTG 59 107585459 107589781 ATATTTGGACCTTTCACCTGTG 59 NA Rattus norvegicus 81 AABR07055532.1 ENSRNOG00000032529 ENSRNOT00000045741 1 1 1 80 7 5423746 5423766 CATCTACATCAAACCTTCAGC 57 5423808 5423827 AATGGGTTCAAGGAAGTGG 58 NA Rattus norvegicus 81 Sae1 ENSRNOG00000015128 ENSRNOT00000020402 1 1 1 80 1 78281212 78286753 TGACTTTGTCAGGTACTGC 57 78281150 78281168 TTCACAATTTCCTGTGCCA 58 NA Rattus norvegicus 81 AABR07057787.1 ENSRNOG00000047389 ENSRNOT00000074064 3 1 1 118 7 87919479 87919497 ACTTCACAGCGATGAGAGG 60 87919360 87919397 TAGAGCCATGTTTGCCCTC 60 NA Rattus norvegicus 81 Ticam2 ENSRNOG00000042070 ENSRNOT00000059466 3 1 1 136 18 40572028 40572049 CGATCTACGACAGTAACATCCT 60 40569627 40571931 AGGAGAAAGCAGTCAGCTG 60 NA InUTR Rattus norvegicus 81 Cep104 ENSRNOG00000025000 ENSRNOT00000031138,ENSRNOT00000077307 1 2 2 80 5 171276126 171276144 TTACTTGCCAGAACTGGAG 57 171276186 171277680 CTTAAACAAGGCCATTTCCTG 58 NA Rattus norvegicus 81 Tmem160 ENSRNOG00000015304 ENSRNOT00000020609 2 1 1 82 1 78419095 78419113 ATGGACTTCTGGCATCAGG 60 78419159 78420101 CAGGAAGAAGCCATAGGCA 60 NA Rattus norvegicus 81 Nupl2 ENSRNOG00000010435 ENSRNOT00000013865 1 1 1 80 4 7524721 7524739 AGGTTTGGGAGTCTTCAGG 59 7521022 7524679 CTGTGAAACCTGAAATGTTGG 58 NA Rattus norvegicus 81 Elmsan1 ENSRNOG00000010653 ENSRNOT00000088712,ENSRNOT00000014158 3 2 2 80 6 107640427 107640445 CACTCACCTTTGGTGACCT 60 107639253 107640386 TCTGAGAAGTCTTAACGTCCAC 60 NA Rattus norvegicus 81 LOC100912697 ENSRNOG00000009354 ENSRNOT00000012388 2 1 1 60 3 2396607 2396627 ACTAACTGCGAATTCAACGTG 60 2396649 2396667 ACTGGTGTAGTGCTGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnip2 ENSRNOG00000018018 ENSRNOT00000068278,ENSRNOT00000024709,ENSRNOT00000024750,ENSRNOT00000090765 3 4 4 80 1 262914154 262914175 CCATAGATGATAGACTGAGCTG 58 262914215 262914425 CAAGCATTTCCTCCTTTGTG 58 NA Rattus norvegicus 81 AC098125.3 ENSRNOG00000055683 ENSRNOT00000087591 1 1 1 62 1 229938522 229938540 CAGAAGGTCTTCTTTGCCA 58 229938566 229938587 AAGCAGCAACTTGTCAAGC 60 NA DesignNoJunction Rattus norvegicus 81 Rars2 ENSRNOG00000008643 ENSRNOT00000011688 2 1 1 80 5 50075580 50078291 GATTGCCTGTCAGCTTTCC 59 50078335 50078353 TTTGAAACTGGAACAGCCG 59 NA Rattus norvegicus 81 Tsfm ENSRNOG00000048843 ENSRNOT00000071543 1 1 1 80 7 70318090 70318110 GGAGAAAGACTAAAGAAGGCT 58 70317186 70318048 CTGTCTCGCAGTTTACCTC 58 NA Rattus norvegicus 81 Acot2 ENSRNOG00000010134 ENSRNOT00000013515 2 1 1 73 6 107463728 107463746 AAGAAGCCGTGAACTACCT 59 107466075 107466093 TTTGGAAATCCCAAGCAGC 59 NA DesignNoJunction Rattus norvegicus 81 Prox1 ENSRNOG00000003694 ENSRNOT00000004905 2 1 1 86 13 108406769 108406787 GAGGAACTGTCCATCACCA 59 108406836 108438727 CTCTGGAACCTCAAAGTCGT 60 NA Rattus norvegicus 81 Bend7 ENSRNOG00000022712 ENSRNOT00000032173 1 1 1 80 17 77486479 77496756 TCCTCAGATCCAGAAGTGC 59 77486417 77486440 GTTTGACAATATAGAGTCCAGCTG 60 NA Rattus norvegicus 81 Actrt3 ENSRNOG00000027908 ENSRNOT00000030700 2 1 1 95 2 116416753 116417616 TCCATCAGCTATCCAGTGG 59 116417673 116417693 GTTCAGGTTCAGGTTGTAGTC 59 NA Rattus norvegicus 81 Actg2 ENSRNOG00000029401 ENSRNOT00000042699 3 1 1 80 4 115224377 115224776 ATGACCCAGATCATGTTCGA 59 115224316 115224334 AGATGCATAGAGCGAGAGC 60 NA Rattus norvegicus 81 Zc3h12b ENSRNOG00000011508 ENSRNOT00000076903,ENSRNOT00000081354 1 2 3 82 X 65068708 65068727 AGGCCATAAAGACATCACTG 58 65068770 65070959 TATCTTGATCTGTAATCGGCG 58 NA Rattus norvegicus 81 Tns1 ENSRNOG00000014182 ENSRNOT00000035277 3 1 1 80 9 81202014 81204863 GTACTCGATGCCAGATAATAGTC 59 81201956 81201975 GGCTTGTACCAATACTTGGA 58 NA Rattus norvegicus 81 Wdr34 ENSRNOG00000015636 ENSRNOT00000021132 1 1 1 80 3 8599776 8599794 AAGTACCTGTTTGCTGTGC 59 8599572 8599733 CAGTTGTACATCACCTTCCC 58 NA Rattus norvegicus 81 Slc12a8 ENSRNOG00000001792 ENSRNOT00000002439,ENSRNOT00000040167,ENSRNOT00000086495 1 3 3 81 11 70381895 70381916 CAGACTTCTAGGAGTGAATCAC 58 70359774 70381855 GAAAGAAATCTTCTCCGTTCG 57 NA Rattus norvegicus 81 Vom1r83 ENSRNOG00000058204 ENSRNOT00000077129 3 1 1 60 4 88185622 88185641 CATAGCAGCAACAACATGAG 58 88185663 88185682 GAATCAAGATGGTCTGGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lcn10 ENSRNOG00000028074 ENSRNOT00000028997 3 1 1 81 3 2897113 2897131 AGTCTGCGAGAATTCCTGG 60 2897176 2897669 CACAGGAATCGTCTTTCGG 59 NA Rattus norvegicus 81 Izumo2 ENSRNOG00000045902 ENSRNOT00000070899,ENSRNOT00000073798 1 2 2 80 1 99447877 99447896 TCGATCAACTGGAAACAGTG 58 99447938 99449090 GAGGACCATCTGTCCTAGAG 58 NA Rattus norvegicus 81 Potea ENSRNOG00000056767 ENSRNOT00000086783 2 1 4 82 14 85883639 85886712 GAAAGAAGGAGTGAAGCAGAG 59 85886756 85886774 CTGTGGCAGCTCTAGAGTC 60 NA Rattus norvegicus 81 Bag3 ENSRNOG00000020298 ENSRNOT00000027616 1 1 1 80 1 199958353 199958373 CAGATAAACAGTGTGGACAGG 59 199958415 199959925 GAGACTGAGATCGCTCAGG 59 NA Rattus norvegicus 81 Cd40 ENSRNOG00000018488 ENSRNOT00000055148 3 1 1 80 3 161530536 161533116 ATACCCTCTGTGGTTTCCAG 59 161533156 161533177 CAAAGATGGTGATGAGGATGAC 59 NA Rattus norvegicus 81 Psx1 ENSRNOG00000043179 ENSRNOT00000066033 2 1 1 60 3 574295 574314 GATGGAAGGAAGACATGCTG 59 574254 574273 TTGGTGGATGTTGTCATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc26a3 ENSRNOG00000006878 ENSRNOT00000009473 2 1 1 80 6 50737093 50737115 GATAAAGGAATGGCTTCTCAGTG 60 50737154 50739193 GCAAATGCTAAACCTTGCAG 59 NA Rattus norvegicus 81 Kremen2 ENSRNOG00000004122 ENSRNOT00000005718 3 1 1 90 10 13079134 13079864 AACTTCTGTAGGAACCCGG 59 13079062 13079080 GGATATCACAGTAGCGCCA 59 NA Rattus norvegicus 81 Thrb ENSRNOG00000006649 ENSRNOT00000008989,ENSRNOT00000008752,ENSRNOT00000061402,ENSRNOT00000085322 1 4 4 80 15 8895308 8898163 GATGTCTTCAGATCGCCCA 60 8895246 8895264 TGTTCAAAGGCCAACAGGA 60 NA Rattus norvegicus 81 Mt1 ENSRNOG00000038047 ENSRNOT00000057898 1 1 1 86 17 78793394 78793412 CAGATCTCGGAATGGACCC 60 78793462 78793480 ATTTGCAGTTCTTGCAGCC 60 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Fcf1 ENSRNOG00000004723 ENSRNOT00000006297 3 1 1 80 6 108802043 108802064 ATCCCTTGTATAACCGATTGTG 58 108802105 108805105 TTTGGCGATTCTTAGTGCC 59 NA Rattus norvegicus 81 Cd72 ENSRNOG00000017485 ENSRNOT00000060442 3 1 1 80 5 58944942 58944962 TATTGGATTGAGCAGATGAGC 58 58943670 58944900 ATGAGAATCGGACCTCCTC 58 NA Rattus norvegicus 81 Lrrc46 ENSRNOG00000009902 ENSRNOT00000013542 3 1 1 80 10 84974093 84974112 AAGGGATTACCTGTATCGGG 59 84973562 84974050 TGCGCTGGATCTTATTCGA 59 NA Rattus norvegicus 81 Samd10 ENSRNOG00000036719 ENSRNOT00000029386 1 1 1 128 3 177093168 177093186 GACAAGCTGCAGAGAATGG 59 177092901 177093076 GTTTCCGAAGGAAGCTTGG 59 NA Rattus norvegicus 81 Fam76a ENSRNOG00000011254 ENSRNOT00000077360,ENSRNOT00000066549 2 2 2 81 5 151107319 151112101 GACGATCGAAAGAAGGTGGA 60 151107257 151107276 CTCTGGTCTTCTGAAGGACG 60 NA Rattus norvegicus 81 Ptgr1 ENSRNOG00000015072 ENSRNOT00000020335 2 1 1 80 5 76118428 76120930 TAGCTAAGCTCAAGGGCTG 59 76118366 76118389 CGAATCCAAGCTTCTTAAGATAGG 60 NA Rattus norvegicus 81 Il3ra ENSRNOG00000001325 ENSRNOT00000001792 2 1 1 60 12 18537795 18537813 CACTCTGCAGATCAACCAG 58 18537571 18537678 TGTCTCATATACCATCTCAAGC 58 NA DesignRelaxed Rattus norvegicus 81 Tor1a ENSRNOG00000006894 ENSRNOT00000064660 3 1 1 80 3 9803651 9806498 ACATCACCCTGTATAAGGACC 59 9803591 9803611 CAAAGATGAAGATGGACCGAG 59 NA Rattus norvegicus 81 Zfp652 ENSRNOG00000017001 ENSRNOT00000022811 1 1 1 80 10 83561531 83561550 TCTTTCAAGCGCAGTATGTC 59 83561593 83562047 GTCGCAGTTCTCACATCTG 59 NA Rattus norvegicus 81 Gng10 ENSRNOG00000025040 ENSRNOT00000020707 3 1 1 137 5 76182232 76185944 TGGAGAGGATCAAGGTCTC 58 76186044 76186063 AAAGTAAAGCACAGGACCTG 58 NA Rattus norvegicus 81 Cwc25 ENSRNOG00000004091 ENSRNOT00000005426 2 1 1 80 10 85691751 85692216 GCTTACAGGTGAGGGACTC 60 85691689 85691708 GGGAATGGTTCTTTACTGCC 59 NA Rattus norvegicus 81 Olfm4 ENSRNOG00000013280 ENSRNOT00000047572 1 1 1 80 15 62407027 62407045 TTACCCGAGACTACGACTG 58 62407088 62412300 GGAAAGTGACTGAGACAGAG 58 NA Rattus norvegicus 81 Olr646 ENSRNOG00000049365 ENSRNOT00000074443 2 1 1 60 3 77018412 77018435 CTCCTAAGTTGATTATTGACTCCC 59 77018453 77018472 ATGCAACCTTCAAATGACAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eef2k ENSRNOG00000016448 ENSRNOT00000022726 2 1 1 80 1 190817934 190817952 AGGTTCTGATCAAGATGGC 57 190819631 190820058 AGTTGGAGAGTTTCTTCGTC 58 NA Rattus norvegicus 81 Ift20 ENSRNOG00000008891 ENSRNOT00000011795 1 1 1 81 10 65807941 65807962 ACCTCCTGATTGACACTATCAC 60 65808004 65808147 ATGTCCTTGGCCATAGCTG 60 NA Rattus norvegicus 81 RGD1560289 ENSRNOG00000022155 ENSRNOT00000029055 2 1 1 80 4 123804617 123804637 TATTATTGAGTTGCCTGACCC 58 123804678 123805603 ATCCTTTCGGCTTCTATGTG 58 NA Rattus norvegicus 81 Htr7 ENSRNOG00000018827 ENSRNOT00000025450,ENSRNOT00000078150,ENSRNOT00000025493 2 3 3 93 1 254670995 254671014 CTTCTGCAACGTCTTCATCG 60 254558985 254670939 GATCCCAAGGTACCTGTCG 60 NA Rattus norvegicus 81 Tom1l2 ENSRNOG00000003590 ENSRNOT00000083093,ENSRNOT00000067866 3 2 2 80 10 46621008 46621026 TCTTCCTCCGCTATGAGAG 58 46617381 46617858 CTTCACTTAGTACTCCATTGCT 58 NA Rattus norvegicus 81 Rn60_13_0801.3 ENSRNOG00000051352 ENSRNOT00000076569 1 1 1 60 13 75165423 75165441 TATGCCAAGGACCCTTCTC 59 75165381 75165399 GGACAAAGCCTAGAATCGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013464.1 ENSRNOG00000023965 ENSRNOT00000041583 1 1 1 80 2 238340223 238369513 ACTGAGAAGCAAACAGATTGAC 59 238340164 238340183 TTGGCTGAAATCTGATGCAC 59 NA Rattus norvegicus 81 Fgf12 ENSRNOG00000001931 ENSRNOT00000002650 2 1 2 80 11 75955068 75955086 ATTTCCTGCAGATGCATCC 58 75955124 75980380 GAATTAGATTGAAGAGGGTGTAGTC 59 NA Rattus norvegicus 81 Lcn8 ENSRNOG00000017161 ENSRNOT00000023062 3 1 1 80 3 2873090 2873108 TCAAAGGAGGGTAGAAGGC 59 2873151 2873593 CTTCCTGAGCTGTTGTACAC 59 NA Rattus norvegicus 81 Dnase2 ENSRNOG00000023830 ENSRNOT00000014887 2 1 1 80 19 26024165 26024186 AGTGTAATTCTCACTTCTCGAG 58 26024227 26024968 GGAGTACAGGTCATCTCCA 58 NA Rattus norvegicus 81 Olr651 ENSRNOG00000047268 ENSRNOT00000048750 1 1 1 60 3 77110154 77110175 TCTCTACTCTTTAAGGAACCAC 57 77110115 77110133 GACACAAGTGAACAGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1311933 ENSRNOG00000012581 ENSRNOT00000016989 3 1 1 80 1 31416644 31416662 AGAAGTTATGGGATGCCCA 58 31416700 31424101 GGTCAGAATAGAAGTCATATCTGTC 59 NA Rattus norvegicus 81 Xkr6 ENSRNOG00000011634 ENSRNOT00000015540 1 1 1 84 15 46946358 47143230 GTGTGGAGGTATATCCGCA 59 47143278 47143296 TCATAGCCCAGTAGAAGCG 59 NA Rattus norvegicus 81 Slc43a2 ENSRNOG00000003835 ENSRNOT00000005100 3 1 1 80 10 63689949 63691005 AAGTAACCCAGACTCGCTC 59 63691048 63691067 GTAAACGTCATGCACATCCC 60 NA Rattus norvegicus 81 Mpp4 ENSRNOG00000010486 ENSRNOT00000014094,ENSRNOT00000038132 3 2 2 80 9 65945892 65945910 GCTATGTCGTGTGGTACGA 60 65944483 65945849 AACATAAACTGTCGTCTGGC 59 NA Rattus norvegicus 81 Apoc3 ENSRNOG00000047503 ENSRNOT00000074942,ENSRNOT00000090985 3 2 2 60 8 50530565 50530585 GAGTCTGATATAGCTGTGGTG 58 50529555 50529574 CTTTCAGGGATTTGAAGCGA 59 NA DesignNoJunction Rattus norvegicus 81 Tp53i13 ENSRNOG00000022615 ENSRNOT00000010691 2 1 1 98 10 62650826 62650844 TCTCCTGAGTCTTCACGAG 58 62651099 62651327 CTTGGTAACACCTGTGGAG 58 NA Rattus norvegicus 81 Elf5 ENSRNOG00000008282 ENSRNOT00000011035 1 1 1 81 3 93360024 93360042 GAGGAGTTCATTGAGGCAG 58 93360087 93363469 AGGAATAACCTTGTGAGCG 58 NA Rattus norvegicus 81 Pon2 ENSRNOG00000009112 ENSRNOT00000036460 3 1 1 82 4 30349412 30351677 TGAGCTCCTTCCAAGTGTG 60 30349348 30349366 GGTCGGAGAAGTAGTGGTC 59 NA Rattus norvegicus 81 Apoa4 ENSRNOG00000055909 ENSRNOT00000080658 3 1 1 80 8 50538237 50538259 CATTAAACATGCCGATGACCT 59 50538298 50538319 TCTGTTTCCTTGGTTAGATGTC 58 NA Rattus norvegicus 81 Tmem67 ENSRNOG00000016187 ENSRNOT00000021839 1 1 1 80 5 25697299 25697318 AACATCATTACCTTTGGGCT 58 25696549 25697256 AGCTACTGTCTTGGTTCAC 57 NA Rattus norvegicus 81 AABR07012299.1 ENSRNOG00000029177 ENSRNOT00000044052 3 1 1 136 2 192416713 192433862 TGAACCTTGTTCACCTCCA 59 192433962 192433980 CTGGACACTTTGGAGGAGG 60 NA Rattus norvegicus 81 AABR07053533.1 ENSRNOG00000049007 ENSRNOT00000071591 3 1 1 80 3 112607876 112607894 AAGCCATTGAACTTCAGCC 59 112607232 112607833 AGCTCAAATGAGAAACCTGG 58 NA Rattus norvegicus 81 Rad18 ENSRNOG00000005907 ENSRNOT00000066468 1 1 1 80 4 144596537 144600112 TGCATCCTAAATCAGCTGC 58 144596475 144596493 GTTTACTTGCTTCAAGGCG 58 NA Rattus norvegicus 81 Zmiz2 ENSRNOG00000025923 ENSRNOT00000052002 3 1 1 80 14 86521420 86521645 GTTTCACTCCTGGGTATGC 58 86521689 86521707 GTGTGAAGTCAGTTGAGGG 58 NA Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000076004,ENSRNOT00000076246,ENSRNOT00000076993,ENSRNOT00000004972 2 4 5 81 X 71311061 71311525 TCCACTGAGAGCATTCCAG 59 71310998 71311016 GGAATGGCACAAAGTCCTC 59 NA Rattus norvegicus 81 Drosha ENSRNOG00000013451 ENSRNOT00000048026 3 1 1 80 2 62913350 62913368 GACCACTTTGCAAATGCAG 58 62913412 62920169 GCTTGATTGCCTCTTCTCC 59 NA Rattus norvegicus 81 Pard3b ENSRNOG00000024345 ENSRNOT00000040778 1 1 1 80 9 69130289 69130309 AAGCAGAAAGAGGAACATGAG 58 69130350 69230686 CTTCTTTCCGAATCTCAGCA 58 NA Rattus norvegicus 81 Rbm22 ENSRNOG00000019235 ENSRNOT00000026087 2 1 1 80 18 55834265 55834283 CGGAGGATAAGACGATCAC 57 55834325 55836120 AGAAATGATTCCTGAGGTCTG 58 NA Rattus norvegicus 81 LOC498316 ENSRNOG00000048659 ENSRNOT00000073985 2 1 1 132 13 109646499 109648747 GGTGTTACTAAAGGACCGC 58 109648843 109648861 TTCTCGTTCAGCTCTTCCA 59 NA InUTR Rattus norvegicus 81 Olr184 ENSRNOG00000017341 ENSRNOT00000023279 3 1 1 60 1 169903406 169903424 CACTGGTGTTTCTCCTCCT 59 169903364 169903383 TAAGTGTGAGGGATGATGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taar5 ENSRNOG00000039869 ENSRNOT00000061209 1 1 1 60 1 22547771 22547792 ATTTCAATTCAGCCTGTAACCC 59 22547732 22547754 GCCTTCCTAAACCATCTATACGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taar5 ENSRNOG00000039869 ENSRNOT00000061209 2 1 1 60 1 22547751 22547772 CCCATCATCTATGTCTTCTCGT 60 22547712 22547730 GGCTCAGGAGGAGTTTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prdm8 ENSRNOG00000002004 ENSRNOT00000002746,ENSRNOT00000071706 1 2 2 80 14 13056813 13056833 TTGGTATGGGAAAGAACTGAC 58 13056377 13056771 GTGTAAGGAGATGACCCGT 59 NA Rattus norvegicus 81 Nudt22 ENSRNOG00000021158 ENSRNOT00000028734 1 1 1 80 1 222247956 222247979 GGAATTATTATCTGAGTGGAGGAC 59 222247672 222247918 GTCTCTGTACCCTCTGTGTC 59 NA Rattus norvegicus 81 Akr1c13 ENSRNOG00000050040 ENSRNOT00000029049 3 1 1 80 17 69641012 69641522 GACACATGGGAGATGTTGG 58 69641564 69641584 CTGCTTGTGGTTAAAGTTGGA 59 NA Rattus norvegicus 81 Olr1617 ENSRNOG00000046129 ENSRNOT00000040603 1 1 1 60 15 27280555 27280578 GTTCTCATCTCACAGTAGTTTCAC 60 27280593 27280615 GGGCTCACATACATTATCATCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psmd6 ENSRNOG00000006751 ENSRNOT00000009249 3 1 1 80 15 12408475 12411512 GATAGGTGACAAGGAGGGAG 59 12411554 12411573 ATATCTAGTCGGTGACCCAG 58 NA Rattus norvegicus 81 Mlh3 ENSRNOG00000006699 ENSRNOT00000033493 1 1 1 80 6 109087847 109087866 CGACCTTGTTCTTCCTTTCC 59 109086647 109087804 GCAGCATCTACAGCATCTC 59 NA Rattus norvegicus 81 Pikfyve ENSRNOG00000015158 ENSRNOT00000020447 1 1 1 80 9 71982412 71991278 TCCATTTCCTTTCGATCCAG 58 71991321 71991339 GGCTCTTTCTCACAGACAG 58 NA Rattus norvegicus 81 AABR07064392.1 ENSRNOG00000046896 ENSRNOT00000072117 1 1 1 87 6 78817531 78817549 CGTTCGGTTCCTAACTGTG 59 78816815 78817483 TATAATGGTGTACCCAGCTCTG 60 NA Rattus norvegicus 81 Batf ENSRNOG00000008588 ENSRNOT00000011563 1 1 1 86 6 109562844 109562862 TTACAACCATGCCTCACAG 58 109562912 109565174 CATCATCGGATGAGTCCTG 58 NA InUTR Rattus norvegicus 81 Fn3k ENSRNOG00000036659 ENSRNOT00000054915 3 1 1 82 10 110640963 110641893 GGCTACAGGTGAAGATCCC 60 110641938 110641957 GTTTCCAGACCAGAGGTCTC 60 NA Rattus norvegicus 81 Gpr165 ENSRNOG00000012995 ENSRNOT00000067298 2 1 1 80 X 65799244 65799634 GAATTTGGCAACACAACAGAG 59 65799673 65799694 GTCAAGGTATTTCCATGTGGAC 59 NA Rattus norvegicus 81 AABR07060778.1 ENSRNOG00000005630 ENSRNOT00000007437 3 1 1 60 4 93405928 93405947 TTGTTGGCAAGAAATGTGCT 59 93405887 93405905 TTCACCACCATCCGATACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Actb ENSRNOG00000034254 ENSRNOT00000042459,ENSRNOT00000080216 3 2 2 80 12 13718146 13718165 GGTCAGGTCATCACTATCGG 60 13718207 13718316 GGATTCCATACCCAGGAAGG 60 NA Rattus norvegicus 81 Trmt11 ENSRNOG00000014240 ENSRNOT00000019436,ENSRNOT00000083276 2 2 2 80 1 29445144 29457383 CCTTTGTTGGAACAGGTGG 59 29457424 29457445 TGTTGTAGTCTATGTCTGTCCC 59 NA Rattus norvegicus 81 Trmt11 ENSRNOG00000014240 ENSRNOT00000019436,ENSRNOT00000083276 3 2 2 80 1 29443793 29443812 TGGAGGACTATGGTTTGGAC 59 29443854 29445014 GTCCATCTGCAATCCATCTG 59 NA Rattus norvegicus 81 AC105693.1 ENSRNOG00000058416 ENSRNOT00000079544 1 1 1 80 2 143984451 143987234 CTTATCAACACTCAGACTTCCG 59 143987274 143987293 TGTTCAGTTCGTAGTAGGCA 59 NA Rattus norvegicus 81 Olr201 ENSRNOG00000017387 ENSRNOT00000023349 2 1 1 60 1 170174852 170174872 TTGTATTCCTGCTGAAGAGAC 58 170174812 170174831 CAGTATGAGTGTGGGATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sptbn2 ENSRNOG00000058842 ENSRNOT00000088288 1 1 1 80 1 219992614 219994959 GACAAAGTGGACAAGGAAGG 59 219995002 219995020 GTCCTCCAGCTTCTCTGAC 60 NA Rattus norvegicus 81 Nucb2 ENSRNOG00000020456 ENSRNOT00000027752 1 1 1 80 1 185120766 185122212 TAGAGGAGATAAGGAGCGG 57 185120704 185120722 TCAGTTCATCCAGTCTCGT 58 NA Rattus norvegicus 81 Nucb2 ENSRNOG00000020456 ENSRNOT00000027752 3 1 1 80 1 185120767 185122215 ACATAGAGGAGATAAGGAGCG 59 185120707 185120725 GTTCATCCAGTCTCGTCCT 59 NA Rattus norvegicus 81 Egln3 ENSRNOG00000005053 ENSRNOT00000007219 2 1 1 96 6 75055998 75056017 GGTTATGTTCGTCATGTGGA 58 75055128 75055939 CTCCATGTAACTTGGCGTC 59 NA Rattus norvegicus 81 Mapkbp1 ENSRNOG00000007018 ENSRNOT00000009430 1 1 1 80 3 111808825 111808843 TTTAACATTAGCAGCGGGA 57 111808886 111809034 TGTCTGCACCTTAATGAGAG 57 NA Rattus norvegicus 81 Utp11l ENSRNOG00000007174 ENSRNOT00000009882 1 1 1 94 5 142669973 142669995 CGATAGGGTCTATAATAGACCCA 58 142667652 142669919 CTTTGGCTATCCGCTTGAG 59 NA Rattus norvegicus 81 Grpel2 ENSRNOG00000042682 ENSRNOT00000065046 1 1 1 86 18 57042621 57043528 GGATTTAACACTGAGATACCAGAG 59 57042558 57042576 ATCTTCGCATCTTCCACAC 58 NA Rattus norvegicus 81 Cd46 ENSRNOG00000007917 ENSRNOT00000057151 3 1 1 80 13 113798012 113802936 CAGTTTACAGTGAATCAGGATATCC 60 113795589 113795608 TCAAAGCAATGATCCATGCA 59 NA Rattus norvegicus 81 Olr282 ENSRNOG00000047675 ENSRNOT00000044753 1 1 1 60 1 173455578 173455598 GAATCCACTAATCTACAGCCT 57 173455538 173455557 CCATAATTTCAACACAGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000076519,ENSRNOT00000075974,ENSRNOT00000075878,ENSRNOT00000091249,ENSRNOT00000077505 2 5 9 86 4 14070569 14070590 CGAAGTGTTGAAACTTTCTGAG 58 14070635 14071125 CCTGGTTCAACTAATTCATGC 58 NA Rattus norvegicus 81 Vom2r30 ENSRNOG00000038479 ENSRNOT00000046047 2 1 1 80 1 74596524 74596544 AGGATTGAATTGGATGTCGTC 59 74594765 74596485 TAGGAAATCTGAAGGAAACGTG 59 NA Rattus norvegicus 81 Ier3ip1 ENSRNOG00000030004 ENSRNOT00000050772 1 1 1 112 4 132141670 132142355 ATTGTAGCAGAGCAGGGAC 60 132151550 132151568 CATCCAGCTACCTCTTGGT 59 NA Rattus norvegicus 81 Nr4a1 ENSRNOG00000007607 ENSRNOT00000010171 1 1 2 80 7 142918578 142919389 CTCATCACTGATCGACATGG 58 142919432 142919450 TTCCTTCAGACAGCTAGCA 58 NA Rattus norvegicus 81 Klk1c9 ENSRNOG00000032857 ENSRNOT00000091964,ENSRNOT00000071416 3 2 5 83 1 100134799 100134915 CCCTTATATGGGAATTCCCTG 58 100134959 100134978 CTTTGTAGGCTTTGATGCAC 58 NA Rattus norvegicus 81 LOC100911833 ENSRNOG00000037188 ENSRNOT00000081488,ENSRNOT00000079192,ENSRNOT00000084717,ENSRNOT00000044408,ENSRNOT00000019969,ENSRNOT00000087441 1 6 6 80 4 154712897 154712915 AAACATTGTCTCTGCTGCT 58 154712957 154713241 TCAAGATATCACCCATCACAG 57 NA Rattus norvegicus 81 Efhd2 ENSRNOG00000013783 ENSRNOT00000018864 2 1 1 101 5 160410285 160411462 CTTCCGGGAGTTCCTTCTG 60 160410202 160410222 GAGACATCAATCTCGGAGAGG 60 NA Rattus norvegicus 81 Kb15 ENSRNOG00000009105 ENSRNOT00000038242 1 1 1 80 7 143211821 143212666 TGGTACCAGACCAAGTATGAG 59 143211761 143211782 GATCTCCATCTTGGTAGTACGG 60 NA Rattus norvegicus 81 Hyal2 ENSRNOG00000031420 ENSRNOT00000081353,ENSRNOT00000017461 3 2 2 87 8 116327688 116327706 CTCTACCATCGGTGAGAGC 59 116327755 116328262 GCAGTTCTCCATACTTGAAGC 59 NA Rattus norvegicus 81 LOC103690317 ENSRNOG00000060185 ENSRNOT00000086886 3 1 1 80 7 140202500 140202519 CCCATGGATCTGTACTTGAG 58 140198624 140202457 GACATCCAAGTCGTCACTG 58 NA Rattus norvegicus 81 Pgf ENSRNOG00000005650 ENSRNOT00000007790 3 1 1 80 6 108999025 109003098 CTCAACAGAAATGGAAGTGGT 59 108998965 108998983 ATGTACACCAGCTTCTCCA 58 NA Rattus norvegicus 81 Appbp2 ENSRNOG00000027654 ENSRNOT00000033684 1 1 1 80 10 72527340 72527358 CTGCCTTCAGTTGTGTACC 59 72522829 72527296 ACATGAAGCAACCTCACAC 58 NA Rattus norvegicus 81 Phyhd1 ENSRNOG00000016794 ENSRNOT00000022552 3 1 1 85 3 8832804 8835814 ACTCAAGAAGTTCCAGGAGG 59 8835862 8835880 CAATCCTCTGCTGCATGAC 59 NA Rattus norvegicus 81 Mettl10 ENSRNOG00000017137 ENSRNOT00000023121 1 1 1 60 1 204836773 204836793 ATAACCTCCTGTAATTGGACC 57 204831911 204836754 GTTCAAATCCTTCACTGAATGC 59 NA DesignRelaxed Rattus norvegicus 81 Klhl41 ENSRNOG00000007461 ENSRNOT00000009969 2 1 1 80 3 55914711 55914833 TATGCTATGATCCTGTGGCT 58 55914875 55914894 GTGAGATCACATTATGGCCA 58 NA Rattus norvegicus 81 Slc9c2 ENSRNOG00000026797 ENSRNOT00000076128,ENSRNOT00000035113 3 2 4 96 13 79042690 79042708 AGGCAAATTTCTGGACGTG 59 79046178 79048932 GTTCAATGAGGCCTAGTTCTC 59 NA Rattus norvegicus 81 Epm2a ENSRNOG00000040242 ENSRNOT00000061930 3 1 1 81 1 5449249 5505162 CACTGGGAAGGAAATGGAC 58 5505205 5505225 GGAGACAATAAACACCATCCA 58 NA Rattus norvegicus 81 Bend5 ENSRNOG00000008025 ENSRNOT00000010628 2 1 1 80 5 131290467 131305094 CTAGACAATGGCAAGGTCCA 60 131305135 131305155 TCCTTGGGTAACTTGTAGCTG 60 NA Rattus norvegicus 81 Pou4f2 ENSRNOG00000012167 ENSRNOT00000016422 3 1 1 105 19 33160693 33160711 AGAGCTTGTCTTCCAACCC 60 33161212 33161230 TACTCTGGGAGACGATGTC 58 NA DesignNoJunction Rattus norvegicus 81 Rab5b ENSRNOG00000006130 ENSRNOT00000061878 3 1 1 80 7 3108397 3109796 GGAGTATGAAGAGGCTCAGG 59 3108336 3108356 ACGTTCATAGCAGTCTTAGCT 59 NA Rattus norvegicus 81 Nhsl2 ENSRNOG00000037951 ENSRNOT00000076442,ENSRNOT00000057718 2 2 4 96 X 71971511 71972296 TACTGTGATACACAGGTCCA 58 71972355 71972373 CTTCACTGGTGAATGGGAG 58 NA Rattus norvegicus 81 Sugp2 ENSRNOG00000020269 ENSRNOT00000027457 3 1 1 81 16 20921849 20925626 CTGCTTACTGGTTTCTGTCTG 59 20921788 20921806 TTCAGTCGCTGTGACTCTG 60 NA Rattus norvegicus 81 Zc3h7a ENSRNOG00000002420 ENSRNOT00000003309,ENSRNOT00000084151 1 2 2 80 10 4566838 4566858 ATTGCTCAACAATCCAGACAG 59 4566895 4567474 CATGATCTGATTACCAAGTACCTG 59 NA Rattus norvegicus 81 Olr614 ENSRNOG00000049509 ENSRNOT00000043599 3 1 1 60 3 76368056 76368076 GCTCTATACAGTCCTGATTCC 58 76368016 76368034 ATCTTTGTTCCGTAGGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mtap ENSRNOG00000006615 ENSRNOT00000029486,ENSRNOT00000090739 2 2 2 89 5 107747693 107747711 GAAGTCATTGCAGTGCCAG 60 107747761 107748550 TAGCCATTTCTATGAGGACCTC 59 NA Rattus norvegicus 81 LOC100363642 ENSRNOG00000046832 ENSRNOT00000072047 3 1 1 60 X 73602260 73602280 TTTCCTAGCATATTTCCACCC 58 73602220 73602239 TTTGGAACTCAGGTTCAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r29 ENSRNOG00000048033 ENSRNOT00000075596 2 1 1 60 1 68222069 68222087 CTCACCAGAATCTCAAGCC 58 68222111 68222129 AAATGCCAGGAAGGTACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Elk3 ENSRNOG00000004367 ENSRNOT00000005911 2 1 1 74 7 34093431 34102292 TTTCTTCAGTGCACAGACG 58 34093375 34093394 CTCCAGAAATGTATGCTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Col1a2 ENSRNOG00000011292 ENSRNOT00000016423,ENSRNOT00000089292 3 2 2 80 4 31565933 31565951 TCTAGAAAGAACCCTGCCC 59 31565992 31566582 GTCAATCCAGTAGTAATCGCTC 59 NA Rattus norvegicus 81 Atp5c1 ENSRNOG00000019223 ENSRNOT00000064802,ENSRNOT00000041346 1 2 4 80 17 72218773 72219502 CAACCCTGAAAGACATTACCA 58 72219543 72219562 CTGCCACCATCTTCATAGAC 58 NA Rattus norvegicus 81 Mien1 ENSRNOG00000007227 ENSRNOT00000009485 1 1 1 80 10 86392431 86392450 GAGATTGAGATCAATGGGCA 58 86392281 86392390 AGCTTCCATGAGATCTTTCTC 58 NA Rattus norvegicus 81 Rabgap1l ENSRNOG00000002736 ENSRNOT00000075887,ENSRNOT00000087506 1 2 4 80 13 78196586 78198065 TGAGAAACTAATGCAGGAACAG 59 78196527 78196547 GATGCGTACATATGAGCTTCC 59 NA Rattus norvegicus 81 Nat9 ENSRNOG00000003264 ENSRNOT00000004372 2 1 1 90 10 103733123 103733142 AGGTCTGACCAAGTTTGAGG 60 103732588 103733072 CATAGCCACCTGCTTAAAGTG 59 NA Rattus norvegicus 81 Zfp142 ENSRNOG00000022414 ENSRNOT00000067080,ENSRNOT00000084964 1 2 2 80 9 81846862 81847938 CCTTCTCGACTCAAGTACCA 59 81846801 81846819 CTTGCACTTGTACCCACAC 59 NA Rattus norvegicus 81 Mir3592 ENSRNOG00000035625 ENSRNOT00000053748 3 1 1 60 6 133884224 133884242 GTTGTCCGTGAATGATTCG 57 133884182 133884202 CTTGAAGAGAAGTTGTTCGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pde4c ENSRNOG00000019518 ENSRNOT00000026457 3 1 1 80 16 20443896 20444312 CATAGACATGGTACTGGCCA 59 20443835 20443853 TTCTTGGTCTCCACCATGG 59 NA Rattus norvegicus 81 Mphosph6 ENSRNOG00000050087 ENSRNOT00000072416 3 1 1 80 19 50358445 50360119 CCTGAAGTTGAGAAGTTAATGC 58 50358386 50358404 GACCTCTACAGTCTCCTCC 58 NA Rattus norvegicus 81 Ksr2 ENSRNOG00000028630 ENSRNOT00000046190 2 1 1 80 12 44636810 44688767 GCCAATTTCTCTGCAAACAC 59 44636749 44636769 TTTGATGGAATTGCCAAGGTC 60 NA Rattus norvegicus 81 Sf3b2 ENSRNOG00000020412 ENSRNOT00000068497 1 1 1 80 1 220653106 220655679 CTATCCCTGAGAGCTGTCC 59 220653044 220653062 AAAGTGGCTTCCCAGTCTC 60 NA Rattus norvegicus 81 Ecm1 ENSRNOG00000021166 ENSRNOT00000028740 3 1 1 80 2 197856151 197856170 ATCCAGAACATGACTGTCCG 60 197855780 197856109 GAAAGCCAGTTTCTCCTCCT 60 NA Rattus norvegicus 81 Tmem201 ENSRNOG00000023152 ENSRNOT00000047763 3 1 1 80 5 166688400 166688947 GGCTTTCAAGAGAATGGAGAC 59 166688340 166688358 TACACTGCTCACCACATGG 60 NA Rattus norvegicus 81 Tac1 ENSRNOG00000007374 ENSRNOT00000009888,ENSRNOT00000034719,ENSRNOT00000052333 2 3 3 81 4 33639425 33639443 GTTTGCAGAGGAAATCGGT 59 33639487 33640445 CATTGCCTCCTTGATTTGGT 59 NA Rattus norvegicus 81 LOC683674 ENSRNOG00000024567 ENSRNOT00000039191 2 1 1 82 12 13302907 13302925 ATCTTTAGTGCCAGCCCTC 60 13302969 13306891 ATGAGGTCATCTGATGACAGG 59 NA Rattus norvegicus 81 Bcl9l ENSRNOG00000012420 ENSRNOT00000064041 1 1 1 84 8 48832366 48832384 CTCAGATGACGAGTTGCTG 58 48832432 48832654 GTTGTTGCTGATACCTGGC 59 NA Rattus norvegicus 81 LOC100910849 ENSRNOG00000047082 ENSRNOT00000075353 2 1 1 123 11 72934703 72934721 CAGTCACCTGAGGTCATGG 60 72932754 72932772 AGAAGGTAGAGCCAGAGGT 59 NA DesignNoJunction Rattus norvegicus 81 Tas2r105 ENSRNOG00000005664 ENSRNOT00000007481 2 1 1 60 4 165828409 165828427 TTTGCCTTTCTCTTGTGGT 58 165828367 165828386 TCACAGTGAATGAGAAGGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911674 ENSRNOG00000005408 ENSRNOT00000007490 2 1 1 191 10 45065461 45071528 CCTCAACGGATGTCATGAC 58 45064554 45064572 TTCTGGATGTACCAGCAGG 59 NA Rattus norvegicus 81 Hagh ENSRNOG00000014743 ENSRNOT00000020192 1 1 1 80 10 14218976 14219000 CTACATGTACCTGATCATTGATGAG 59 14219034 14219720 GTTTCTATAACCTTCTGTGGCTG 60 NA Rattus norvegicus 81 AABR07062108.1 ENSRNOG00000031180 ENSRNOT00000050332 2 1 1 60 4 161278131 161278151 AACTGCAAATCACCAAAGGAG 60 161278091 161278109 TCATCATTGAGCCACTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir211 ENSRNOG00000035648 ENSRNOT00000053771 1 1 1 60 1 125042158 125042176 CTTTGCCTAGGCCTCTGAG 60 125042200 125042218 GTAGAGGTGACCACTGAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001592.3 ENSRNOG00000059551 ENSRNOT00000075019 2 1 1 60 1 54035201 54035219 AAACTCCCATTTGAGGCTG 58 54035159 54035177 AAGTCCCTAACACAACCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp770 ENSRNOG00000043037 ENSRNOT00000067646 2 1 1 60 3 105662488 105662507 AGAATCCTCTTGATGTCCAC 57 105662447 105662466 TCTTCACACTCTGAACACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Camkv ENSRNOG00000058938 ENSRNOT00000090239 2 1 1 80 8 116726903 116727147 CATCTCCCATGAATGGATTTCTG 60 116727187 116727205 TTCTTCTCGATCTGGGCAC 60 NA Rattus norvegicus 81 Grb7 ENSRNOG00000006990 ENSRNOT00000009299 1 1 1 80 10 86407940 86407960 CTGGTTTCATGGACGAATCTC 59 86408001 86408123 ACCAGGAATACACCATCCAC 60 NA Rattus norvegicus 81 LOC103690997 ENSRNOG00000060271 ENSRNOT00000078636 1 1 1 60 1 60332709 60332730 TCATTATCTCCAAAGGACTCCC 59 60332670 60332689 TTGAATAACTGGTTCCACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hdac11 ENSRNOG00000006824 ENSRNOT00000008962 1 1 1 80 4 122793070 122795937 TGCTAAAGAGGCCATCAGG 60 122795981 122795999 TTCCTCTCCACCTTCTCCA 60 NA Rattus norvegicus 81 Cxxc4 ENSRNOG00000045764 ENSRNOT00000072196 1 1 1 80 2 239415058 239415079 GCAACTAATTAAAGGCAGACTG 58 239415117 239417631 CTCCAACTGTTACAACAGTCTC 59 NA InUTR Rattus norvegicus 81 Usp6nl ENSRNOG00000017644 ENSRNOT00000046266 1 1 1 80 17 75777937 75778047 GTGTTTCCTTGACCGAACTC 59 75777876 75777894 GTGAGAATTCGCTCTCCCT 59 NA Rattus norvegicus 81 Lrrc51 ENSRNOG00000020124 ENSRNOT00000027261 3 1 1 81 1 167000680 167005711 GATTCAAGATCTGATAAGCGAGG 59 167000621 167000639 CTGGGTCAGTGACTTTCCT 59 NA Rattus norvegicus 81 LOC100174910 ENSRNOG00000013738 ENSRNOT00000018368 2 1 2 97 18 52033277 52036400 TATTCACAAAGCACCCATGC 59 52032622 52032640 AAGTGTGATGTCCACCTCC 59 NA Rattus norvegicus 81 LOC100174910 ENSRNOG00000013738 ENSRNOT00000018368,ENSRNOT00000077491 3 2 2 98 18 52036435 52036457 CCTTTGGACTCTTGAGAAATCTC 59 52032621 52032639 GAAGTGTGATGTCCACCTC 58 NA DesignNoJunction Rattus norvegicus 81 AC097129.1 ENSRNOG00000031408 ENSRNOT00000048768 2 1 1 93 4 119583582 119587501 ACTGTCCAGGATCCATGAC 59 119583507 119583528 GTCTTTAATCATGCAGGAGGAG 59 NA Rattus norvegicus 81 Srrm2 ENSRNOG00000058561 ENSRNOT00000091287 3 1 1 80 10 13148418 13148729 AAACACAGGTCTCCTACTCC 59 13149931 13149949 AGCTGGTGTTGTACTTCGA 59 NA Rattus norvegicus 81 Olr292 ENSRNOG00000057889 ENSRNOT00000083924 3 1 1 60 1 212886221 212886240 TCTATACCTACATTCGCCCT 57 212886263 212886281 ATGGACACCACCTTATCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr832 ENSRNOG00000048539 ENSRNOT00000049091 3 1 1 60 4 148711528 148711548 TGTTTCATACAAGCCTTCGTC 59 148711488 148711506 CAGCCATGAGAAGAGAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dennd4b ENSRNOG00000022373 ENSRNOT00000049810 2 1 1 80 2 189639414 189639610 CACCCTCCCTAGAAATTCTG 57 189639650 189639671 CCATGATTTCCTCATCATACAC 57 NA Rattus norvegicus 81 Dmrta1 ENSRNOG00000024093 ENSRNOT00000038972 1 1 1 131 5 108278852 108278870 ATGACTGTAGCTGCTCTGG 59 108281474 108281494 GCATGACTCACAGTTACTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Lrfn3 ENSRNOG00000020839 ENSRNOT00000028275 2 1 1 80 1 88820048 88823499 TCCTCGTTTACAGGATGATCC 59 88819988 88820006 ACAGATCATAGGTACGGCC 59 NA Rattus norvegicus 81 Olr213 ENSRNOG00000048519 ENSRNOT00000046171 2 1 1 60 1 170840577 170840595 TTTGCCTACATGAGACCCA 59 170840535 170840555 ACACAGAGACAACCTTATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scx ENSRNOG00000021812 ENSRNOT00000029768 1 1 1 224 7 117519615 117519633 TACATTTCTCACCTGGGCA 59 117519818 117520724 GTCTTTGCTCAACTTTCTCTGG 60 NA DesignRelaxed Rattus norvegicus 81 LOC100364190 ENSRNOG00000006617 ENSRNOT00000008688,ENSRNOT00000067874 1 2 2 82 4 76995628 77019825 CACTTGGATTCAGCCAGTG 59 77019870 77019889 GCTGAGTTTCTGTTGACTCC 59 NA Rattus norvegicus 81 Dnaaf1 ENSRNOG00000015590 ENSRNOT00000079580,ENSRNOT00000020917 1 2 2 80 19 52240450 52240468 CAGTGGAAGATGCAGACCT 59 52240511 52242699 GAGATGTGACCTCTTCAGGG 60 NA Rattus norvegicus 81 Nim1k ENSRNOG00000016353 ENSRNOT00000021964 2 1 1 141 2 52492488 52492506 TAGCAGAGCCATAGGAACG 59 52465409 52492383 AGATGACAGCTCATCCTCG 59 NA InUTR Rattus norvegicus 81 Vom1r2 ENSRNOG00000034119 ENSRNOT00000052300 3 1 1 60 1 86362705 86362726 AGAAACGTGTCCATTAGTACCA 60 86362747 86362765 GACTGATGGTGATTGCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Car11 ENSRNOG00000021017 ENSRNOT00000028540 1 1 1 80 1 101685245 101685263 TGTTTGGAGCTCGAGATGG 60 101685307 101685537 AGTGGATTAGCTGCACCTC 60 NA Rattus norvegicus 81 Nap1l5 ENSRNOG00000007808 ENSRNOT00000010263 2 1 1 86 4 89150635 89150653 GAGGAAGAAGAGGAGGCTG 59 89150308 89150586 CAGTCTCAAGTCTGTCAGCT 60 NA InUTR Rattus norvegicus 81 Vrk3 ENSRNOG00000026517 ENSRNOT00000035748 3 1 1 85 1 100776906 100776924 TCAAGTGGCTTTATGGGTC 57 100776971 100780464 GTCCTGATACTTCTGCTTCTG 58 NA Rattus norvegicus 81 Nhp2 ENSRNOG00000004247 ENSRNOT00000064984 2 1 1 80 10 34978260 34978278 AGGTGTACTGCCATCTTCC 59 34978321 34978733 CACCCAAGTCCGTCTTAGAG 60 NA Rattus norvegicus 81 LOC100362149 ENSRNOG00000029627 ENSRNOT00000041813 2 1 1 60 3 22964575 22964595 ATCGTTTCCAGATGAGAATCC 58 22964616 22964635 ACAATCTCTGAAGGACTGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbak ENSRNOG00000001099 ENSRNOT00000077986,ENSRNOT00000001455 1 2 2 83 12 13430076 13438069 TATCAAAGGGCCCACTGTC 59 13438116 13438134 TCCTCTCCTCAGAGTCCAG 59 NA Rattus norvegicus 81 Eif4g1 ENSRNOG00000001738 ENSRNOT00000041777,ENSRNOT00000040029 1 2 2 80 11 83911082 83911213 CTGCAATTATCTTTGAGACTCC 57 83911023 83911043 TCAGGTATTTCTGAAGCAGTC 58 NA Rattus norvegicus 81 Slc52a2 ENSRNOG00000032561 ENSRNOT00000047380 3 1 1 90 7 117606902 117606920 ACCTACCTGATGACACTGG 58 117606974 117607097 GTACCCATGAAAGCACCAC 59 NA Rattus norvegicus 81 Ankrd13d ENSRNOG00000028247 ENSRNOT00000025641 3 1 1 81 1 219530137 219530155 CAGTCGACTCACTTCTCCT 59 219523841 219530095 CCAGATACCACATTTGTTCCTC 59 NA Rattus norvegicus 81 Qsox2 ENSRNOG00000018574 ENSRNOT00000061735 2 1 1 80 3 3677979 3677997 ATCGACTTCCTGCAGAACC 60 3677739 3677938 GATGTCACTGGACTGAATAGGA 59 NA Rattus norvegicus 81 RGD1561699 ENSRNOG00000047839 ENSRNOT00000068306 3 1 1 86 14 15424608 15425381 GAATCAAGTCCTAGGGTGC 58 15424540 15424559 AGGGAATCCAAGTCTTTCTG 57 NA Rattus norvegicus 81 Vprbp ENSRNOG00000013841 ENSRNOT00000079801,ENSRNOT00000018932 1 2 2 80 8 115589170 115589650 TATCTTGCTGTCATTGAGAACC 59 115589690 115589709 CCTACCCACTTCATAAAGCC 58 NA Rattus norvegicus 81 Olr635 ENSRNOG00000055872 ENSRNOT00000084374 1 1 1 60 3 76790636 76790656 TGTATCCACTCTTCAGCACAG 60 76790678 76790696 CATTTGGTCCACAGAACGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr635 ENSRNOG00000055872 ENSRNOT00000084374 2 1 1 60 3 76790624 76790643 TGGGTAGGGTCTTGTATCCA 60 76790664 76790684 AGAACGGTAATCTTAAGGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ciita ENSRNOG00000002659 ENSRNOT00000003572,ENSRNOT00000085310,ENSRNOT00000085479 3 3 3 80 10 5239743 5239972 CGAACTCAACTCAGAGACAG 58 5239682 5239702 TCATCCATTTCCATATCCTGC 58 NA Rattus norvegicus 81 Ddhd1 ENSRNOG00000009481 ENSRNOT00000032704 1 1 1 80 15 19981022 19985349 GGGATGAGCTAGTTAAAGGC 58 19980961 19980980 CTTCAAAGTCTGGATTCCGG 59 NA Rattus norvegicus 81 Bbs9 ENSRNOG00000015189 ENSRNOT00000020481 1 1 1 80 8 23782363 23786981 CGACTAGTTGTGGACTGGA 59 23787023 23787043 AGATGCTGACTGGTTTAAAGG 58 NA Rattus norvegicus 81 Iqcc ENSRNOG00000048553 ENSRNOT00000074345 2 1 1 80 5 147820342 147820454 TTAACAGTCGGAAGGAGTACC 59 147820282 147820303 TAGTAGGCTTGTCTCTGATCTG 59 NA Rattus norvegicus 81 Tle2 ENSRNOG00000005874 ENSRNOT00000084006,ENSRNOT00000061279 3 2 2 85 7 10997906 10997924 AAGAGGAGCATCCTAGCAG 59 10997137 10997857 CTCACTGTCATAAGGCCCT 59 NA Rattus norvegicus 81 Vom1r98 ENSRNOG00000052138 ENSRNOT00000086882 2 1 1 60 4 121913023 121913042 ACTTTCTCCAAAGGCAACTC 58 121913062 121913083 GCTCATAAACATTAGAAGGGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Catsper2 ENSRNOG00000023064 ENSRNOT00000030019 3 1 1 80 3 113370366 113370861 CCATGTTGTCTCTGCTTCC 59 113370304 113370322 AGACCCTTAGCAGTTGGAG 59 NA Rattus norvegicus 81 Derl3 ENSRNOG00000028243 ENSRNOT00000038623 2 1 1 81 20 13705833 13705851 TGGAGGCTCATCACTACCT 60 13705651 13705788 AGTAGCGGAACACGAAGAG 60 NA Rattus norvegicus 81 AABR07051241.1 ENSRNOG00000046756 ENSRNOT00000074026 2 1 1 60 3 2513295 2513313 TGCCTGTCCCTTTACTGTC 59 2513341 2513360 GACAAGTAAGCAAGCAGACC 59 NA DesignNoJunction Rattus norvegicus 81 Card9 ENSRNOG00000051470 ENSRNOT00000091484 2 1 1 80 3 3802860 3802878 ATGTACAAGGACCGGATCG 59 3801648 3802816 CCTTGAGGTCATAGCCTGG 60 NA Rattus norvegicus 81 Pqlc2 ENSRNOG00000017706 ENSRNOT00000083341,ENSRNOT00000023896 3 2 2 84 5 157750887 157750905 GAGTGAGGGCAGCTATCTG 60 157749862 157750842 GATGGAGATAATGGTGTCAAGC 59 NA Rattus norvegicus 81 Sult2b1 ENSRNOG00000021046 ENSRNOT00000067430,ENSRNOT00000028570 2 2 2 87 1 101717013 101717319 AAAGGAGAAGTGCAGTTTGG 59 101716945 101716966 AGGTGATAAACAGGAAGTTCTC 58 NA Rattus norvegicus 81 Eml6 ENSRNOG00000037462 ENSRNOT00000056706 1 1 1 80 14 114179296 114180707 CAGCAAATACATTCAGGTGTC 58 114179236 114179254 GCTTCTGTTACCTGCTTCC 59 NA Rattus norvegicus 81 Upk1a ENSRNOG00000024331 ENSRNOT00000033621 1 1 1 80 1 89061338 89062520 TTTACCAAGGGTTGCTTCG 58 89061276 89061294 GATTGCAAAGCCAAACCAC 59 NA Rattus norvegicus 81 Zbtb24 ENSRNOG00000000308 ENSRNOT00000057175 3 1 1 83 20 46179084 46179103 TTTACCTGTGATCAGTGTGG 58 46179149 46179944 TAGTGAGTGGCCTGTATGG 59 NA Rattus norvegicus 81 Adad2 ENSRNOG00000015690 ENSRNOT00000021072 3 1 1 80 19 52261046 52261176 CAGCATAGAGACAATCCTGAC 58 52261222 52261241 GAATTCTCACTCAGGAGTCG 58 NA Rattus norvegicus 81 Ppbp ENSRNOG00000002829 ENSRNOT00000003794 2 1 1 80 14 18852710 18852731 AATCCCACTGAACTCTATCTCC 59 18852527 18852669 AGTGTGGCTATCACTTCCA 58 NA Rattus norvegicus 81 RGD1566239 ENSRNOG00000019990 ENSRNOT00000063780 2 1 1 128 16 20672608 20673165 GTCTAGACCAAGCTCACCG 60 20673257 20673275 CTTCCACTGCCAGTACCTC 60 NA Rattus norvegicus 81 Srsf2 ENSRNOG00000000248 ENSRNOT00000067739 1 1 1 91 10 105794950 105794968 AGAGTCCAAGTCTAGGTCG 58 105793832 105794895 TTGCCGATCCATCATTCTC 58 NA InUTR Rattus norvegicus 81 Kcng4 ENSRNOG00000015746 ENSRNOT00000021271 2 1 1 94 19 52280114 52280132 CCTCTCCGTTCTCTTCGTG 60 52273738 52280056 TAGCGCATTCTCCCTTGTC 60 NA Rattus norvegicus 81 RGD1566270 ENSRNOG00000048003 ENSRNOT00000048356 1 1 1 60 3 58009211 58009230 CATCAAGCACTCAAAGAGCA 59 58009170 58009190 TTTCTGATCGTTCTCCTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr516 ENSRNOG00000049954 ENSRNOT00000073426 1 1 1 60 3 74014131 74014151 CTATGCTTTCATCCTGTTGTC 57 74014091 74014110 GACTTTCCTTCTCCCTTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr531 ENSRNOG00000057929 ENSRNOT00000090836 1 1 1 60 3 74544676 74544696 CTTCTTCTGTGACATACCTCC 58 74544636 74544660 CTCATTAATAGAAGTGTCTCCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1312005 ENSRNOG00000022429 ENSRNOT00000029239,ENSRNOT00000079217 2 2 2 68 18 54118345 54121597 TCTCTGGACATCTGAAGGA 57 54121628 54121647 AGCCTGGAGTATACATGTCC 59 NA DesignNoJunction Rattus norvegicus 81 Fancd2 ENSRNOG00000061085 ENSRNOT00000082618 1 1 1 80 4 145521255 145521958 CAAGCCAGAAATCAATGTCTC 58 145522000 145522018 CGTTATGTTGTCTTGCCAC 57 NA Rattus norvegicus 81 Galnt3 ENSRNOG00000005727 ENSRNOT00000007615 3 1 1 80 3 52177335 52177356 GAAGGCATGTGTCTATAAAGGT 58 52176402 52177295 TAGAGAAGTTGGTCCTTCCG 59 NA Rattus norvegicus 81 Rgs7 ENSRNOG00000021984 ENSRNOT00000065041 2 1 1 80 13 93116973 93116993 AGAGTTATGACAAGACCACAC 58 93115217 93116931 GCTTGTAAATGTGCTCCTG 57 NA Rattus norvegicus 81 Wdr4 ENSRNOG00000001181 ENSRNOT00000068289 3 1 1 95 20 10248062 10248080 TCTGGAGACGTCTACTCCT 59 10247393 10248003 ACTCACAGCCACATCTAGC 60 NA Rattus norvegicus 81 Chdh ENSRNOG00000015859 ENSRNOT00000021407 1 1 1 80 16 6107007 6107025 GCTGAAACTGAGAAGCACC 59 6107069 6107625 TCCTCGACATCGGTTTCTG 60 NA Rattus norvegicus 81 Mysm1 ENSRNOG00000026299 ENSRNOT00000039554 3 1 1 80 5 113919769 113919788 GATAAAGTCCGAGTGACCGA 59 113918439 113919726 CCTTGTTCTCATGGACTGC 59 NA Rattus norvegicus 81 Alkbh1 ENSRNOG00000012264 ENSRNOT00000016389 2 1 1 80 6 111459221 111461327 CTGTCCTTCAGCTTTGGAC 59 111459159 111459177 CATAAACATGGCTGTGGGA 58 NA Rattus norvegicus 81 Tubb6 ENSRNOG00000018371 ENSRNOT00000024947 1 1 1 114 18 63131113 63131131 AAGTGATCAGCGATGAGCA 60 63131205 63132710 ACGTACTTCTTAGAGGATGACTC 59 NA Rattus norvegicus 81 Cox16 ENSRNOG00000047115 ENSRNOT00000008954 1 1 1 80 6 105209964 105214127 GGAGTTCCCATGTTGTTGC 60 105209902 105209921 TGTCACAGCATCATATCGGA 59 NA Rattus norvegicus 81 Lamb2 ENSRNOG00000047768 ENSRNOT00000072098,ENSRNOT00000083578 2 2 2 80 8 117269290 117269676 CCTTCAAGACATTTCGTCCTG 59 117269718 117269736 AATATCGGTAGACACGCCA 59 NA Rattus norvegicus 81 Ism2 ENSRNOG00000050312 ENSRNOT00000074480 3 1 1 81 6 111310570 111312220 GGATATGCTTGATTCAGATGTG 57 111310510 111310531 TTGGCTCAGATACTTAGTTAGG 57 NA Rattus norvegicus 81 Cnga4 ENSRNOG00000017609 ENSRNOT00000023751 2 1 1 80 1 170244337 170244358 CTGGTAAAGAAGTACATGAAGC 57 170244399 170245076 CTGAAGATGCTGGTACCAG 58 NA Rattus norvegicus 81 Zdhhc22 ENSRNOG00000011285 ENSRNOT00000015046 2 1 1 80 6 111013713 111015555 GGAGCTGGGAATGTAATCGA 60 111013652 111013673 AGGGAAATGCAAAGAAAGTAGG 59 NA InUTR Rattus norvegicus 81 Alx1 ENSRNOG00000004390 ENSRNOT00000006007 2 1 1 80 7 44767507 44767530 ATTACCCGGATGTATATGTCAGAG 60 44764695 44767469 TTTGAAACCAAACCTGGACC 59 NA Rattus norvegicus 81 Olr1624 ENSRNOG00000045711 ENSRNOT00000041733 3 1 1 60 15 26780922 26780940 TCACGGAATTCATCCTCCT 58 26780880 26780898 GTGAAGACCAGGAGTTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp574 ENSRNOG00000055761 ENSRNOT00000079847 1 1 1 60 1 81955560 81955578 CTCTGCATTCATGTCCCTG 58 81955600 81955620 CGGTGATAAAGGAACTTGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ngb ENSRNOG00000011719 ENSRNOT00000016057,ENSRNOT00000081727 1 2 3 89 6 111128697 111128715 GGACCTGTCTTCACTGGAG 59 111127274 111128643 CACCTACTGTCGAGAAGGAG 59 NA Rattus norvegicus 81 Dcdc5 ENSRNOG00000022178 ENSRNOT00000041494,ENSRNOT00000089524 2 2 2 80 3 97401052 97401070 TTCCTCTGTGTTTCAGGCT 59 97401113 97402873 TAAATCAGCCTTGGCAACAC 59 NA Rattus norvegicus 81 RGD1565059 ENSRNOG00000021324 ENSRNOT00000086472 3 1 1 84 2 154491172 154505261 TCATGGAAACAAGAGCCGT 60 154491106 154491124 TCTGTAGCCACACCTTACC 59 NA Rattus norvegicus 81 Cd320 ENSRNOG00000006901 ENSRNOT00000009067 2 1 1 82 7 18703754 18704969 GGAAGAGTGTAGAATTGAGCC 59 18705013 18705031 TGATGTTGTCACAGGAGCA 59 NA Rattus norvegicus 81 Pgm2l1 ENSRNOG00000017079 ENSRNOT00000022963 2 1 1 80 1 165278531 165278549 CTTCGAACAAGTGGGACAG 59 165278593 165280570 TAAGGCAGTGTCACTCTGG 59 NA Rattus norvegicus 81 Akr1b1-ps2 ENSRNOG00000023285 ENSRNOT00000018151 1 1 1 60 4 148952004 148952023 CTGCTGTTAACCAGATCGAG 59 148951963 148951983 CAGTACTCAATCAGCTTCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1396 ENSRNOG00000048331 ENSRNOT00000045600 1 1 1 60 10 34713723 34713744 ACCCTTTGATCTATACCCTGAG 59 34713765 34713783 CCTAGCACCTTCCACAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1311517 ENSRNOG00000020199 ENSRNOT00000027347 2 1 1 82 5 173556914 173558769 TGCCACAGTCTTCAGTGAG 60 173558815 173558833 GGAGAAGGCAGAAGGATCC 60 NA Rattus norvegicus 81 Olr598 ENSRNOG00000045832 ENSRNOT00000039963 2 1 1 60 3 76052682 76052701 AATGGTAGACGCTTTGACAC 59 76052724 76052742 ATTGGACCGACAGAAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910887 ENSRNOG00000050926 ENSRNOT00000072979 3 1 1 60 13 9480114 9480134 CTCAGCCATCATTCTGTTGAC 59 9480150 9480174 GAAGAAATACATAGGTGTTTGGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC679195 ENSRNOG00000029868 ENSRNOT00000045263 2 1 1 60 13 37697419 37697437 ATCAACAAGTCCACACCCT 59 37697377 37697397 CAGGCATGTTCCCATTATCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr108 ENSRNOG00000015909 ENSRNOT00000021296 1 1 1 60 1 168639808 168639829 TATTTACTACGGTCCTTTGCTG 58 168639849 168639868 AGAACTTCTGTGGCTGATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mff ENSRNOG00000015428 ENSRNOT00000077859,ENSRNOT00000020705,ENSRNOT00000089142 2 3 3 86 9 90886981 90891871 CAAAGCGAAGAGATCCGAG 58 90891921 90891939 GACCAACTGTCCATTCTGG 58 NA Rattus norvegicus 81 Olr162 ENSRNOG00000047589 ENSRNOT00000075826 2 1 1 60 1 169683496 169683516 CCAGCCTATGTACCATTTCCT 60 169683536 169683556 AGTAGTTGCCAGACCTATGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Muc1 ENSRNOG00000020539 ENSRNOT00000027850 3 1 1 80 2 188545328 188545349 TTAATTCTTCCCTGGAAGACCC 60 188545389 188545507 AAACCTGCAGAAACAATCCG 60 NA Rattus norvegicus 81 AABR07052768.2 ENSRNOG00000055669 ENSRNOT00000068048 2 1 1 60 3 74567488 74567508 TATTTCTTCCTCACCCATCTG 57 74567448 74567467 TAGGTGTGATGACAGTTGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mfsd12 ENSRNOG00000039858 ENSRNOT00000061191 1 1 1 80 7 11219186 11219206 GGCTTATTGTGAACCTGTCTC 59 11219039 11219144 TGGCAATGAACTTCTTGGG 58 NA Rattus norvegicus 81 Ier3 ENSRNOG00000000827 ENSRNOT00000080822 2 1 3 71 20 3439751 3439769 CCTCGAGTGGTGAGTATCG 59 3439698 3439718 CTAGTTGTTCCCAAAGGTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnga3 ENSRNOG00000051950 ENSRNOT00000085720,ENSRNOT00000081651,ENSRNOT00000081250,ENSRNOT00000084742 3 4 5 81 9 43834354 43834373 AAGTATCCAGCCAGGAAAGG 60 43834417 43844722 TCCTTCTTCCTGCCTTTCC 59 NA Rattus norvegicus 81 AABR07030053.1 ENSRNOG00000048453 ENSRNOT00000071102 2 1 1 95 10 64930082 64930101 AGCAAGGACTAGAGCTTCTC 59 64930160 64930178 CCTTCCTTCTGGTCACCTG 60 NA DesignNoJunction Rattus norvegicus 81 Gmps ENSRNOG00000051151 ENSRNOT00000076292,ENSRNOT00000084238 3 2 3 80 2 154567243 154567264 AGACAGTGTAGACAAAGTAGCT 59 154567303 154569735 GATTCATTGGCTATACCTGCA 58 NA Rattus norvegicus 81 Tcof1 ENSRNOG00000026108 ENSRNOT00000045041 1 1 1 80 18 56115529 56115547 ATCATCTGTTGCAAGCAGG 59 56112688 56115489 GATGAGTCAGGAAATTCTTCTGG 59 NA Rattus norvegicus 81 Muc15 ENSRNOG00000004703 ENSRNOT00000079600,ENSRNOT00000006256 1 2 2 80 3 101908250 101910819 GAAACGAACCAGTTCTGCG 60 101910857 101910881 CTCGGTTGTAGTAACTAGAATTTCC 59 NA Rattus norvegicus 81 Zbp1 ENSRNOG00000006314 ENSRNOT00000008365,ENSRNOT00000081036 2 2 2 81 3 171278617 171278635 ATCCACCGTAGGTCAAAGG 59 171277526 171278573 CTTCAGAACTTGCACCTGTG 60 NA Rattus norvegicus 81 Mfsd2b ENSRNOG00000023508 ENSRNOT00000032664 2 1 1 81 6 28959008 28959288 TAACCATACTGGTCTCGGC 59 28958945 28958964 AATGCAGATGTCCTCTTCCC 60 NA Rattus norvegicus 81 Irak2 ENSRNOG00000021817 ENSRNOT00000029819 1 1 1 80 4 145647548 145649916 CCTCAGGAAGCTACAGAGAC 59 145649954 145649977 ATACAGTAGGATGTTCTCCATCAG 60 NA Rattus norvegicus 81 Ccz1b ENSRNOG00000001032 ENSRNOT00000001365,ENSRNOT00000080567 2 2 2 80 12 12646595 12646613 ACCGAATGGAAGAAAGCCT 59 12646654 12649874 GTTCTAGTCCACTCCAGATGAG 60 NA Rattus norvegicus 81 Dusp13 ENSRNOG00000013112 ENSRNOT00000067781 2 1 2 115 15 2741196 2741970 AACCACAAGGGATGGACTC 59 2742049 2742067 CAGCAATCGCTGTAGTGAG 59 NA InUTR Rattus norvegicus 81 Rn60_4_1636.2 ENSRNOG00000055662 ENSRNOT00000084019 1 1 1 60 4 163559451 163559470 GACACCGCAATGTGATAGTC 59 163559491 163559511 AATTCTTGATGGGTTACCGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trrap ENSRNOG00000025244 ENSRNOT00000076323,ENSRNOT00000030545,ENSRNOT00000091346 2 3 3 80 12 11604477 11604498 GAGATCTTCCAGACTACAGTCC 60 11603808 11604438 GAAGGAGTTGGCAACAATCTG 60 NA Rattus norvegicus 81 Cyp7b1 ENSRNOG00000009730 ENSRNOT00000013116,ENSRNOT00000082084 1 2 2 80 2 102726668 102726686 AATTGTTCAGGAGAGGCAG 57 102726141 102726624 AAGCCAAGATGATGTGCTC 58 NA Rattus norvegicus 81 RGD1560186 ENSRNOG00000031098 ENSRNOT00000049634 2 1 1 60 13 110372244 110372263 CCACCTTCAGAAGTTGACCT 60 110372285 110372304 ACACTTTCTCTTGCACTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zc3h14 ENSRNOG00000004083 ENSRNOT00000040440,ENSRNOT00000039509,ENSRNOT00000078050 3 3 3 95 6 122763601 122764880 ATTTCACCTTGCAAAGCCT 58 122764938 122764957 TGCTTTAGTACACTTTGCGT 58 NA Rattus norvegicus 81 Grin2a ENSRNOG00000033942 ENSRNOT00000044626 3 1 1 80 10 6082910 6111286 CAGTTTGTTGGTGATGGTGAG 60 6111326 6111346 CACCTCATTCTTCTCGTTGTG 59 NA Rattus norvegicus 81 Cst8 ENSRNOG00000004989 ENSRNOT00000006667 3 1 1 81 3 143135780 143155906 ACTTCCCTGGAATGTGTCAG 60 143155950 143155968 TAGATGTAGCCAGCAAGGC 60 NA Rattus norvegicus 81 Olr562 ENSRNOG00000037834 ENSRNOT00000057479 2 1 1 60 3 75465840 75465859 TCTCAATTGGTGATTGGCTC 58 75465882 75465900 GTGATGTCTGCCCTATCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tcp10b ENSRNOG00000013374 ENSRNOT00000018015,ENSRNOT00000077340 2 2 2 87 1 53541007 53541025 CAAAGAGGCTTTGGCAGAC 60 53541075 53542759 TGGAAGACCAGATATCAGCC 59 NA Rattus norvegicus 81 LOC257650 ENSRNOG00000028430 ENSRNOT00000038939 2 1 1 85 10 86223350 86226915 TCCTTCCCTGCTAGATGTG 59 86226961 86226982 CTCCAAATCCAGAACATAAAGC 58 NA InUTR Rattus norvegicus 81 Olr556 ENSRNOG00000043492 ENSRNOT00000066249 3 1 1 60 3 75323167 75323185 TCCTTATGTTGGGAGGCAC 59 75323209 75323227 ACATAGCGATCATAGGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crebzf ENSRNOG00000018987 ENSRNOT00000025653 1 1 1 91 1 156294989 156295007 GGATAAGGTGTCGGTGGAG 60 156294705 156294723 GGCAGGAAGGAAATCACCT 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rgs3 ENSRNOG00000024501 ENSRNOT00000080744,ENSRNOT00000059183,ENSRNOT00000059181 3 3 3 80 5 78504609 78504627 GAGTGTGAAGCTACAGGAG 57 78510572 78516415 AATAAGCACTCTGCCTTCTC 58 NA Rattus norvegicus 81 Cdk12 ENSRNOG00000006000 ENSRNOT00000082668,ENSRNOT00000008256 2 2 2 80 10 86180023 86184294 ATTTCAAGAAGGACAAAGGTGC 60 86184334 86184353 AACCTGATTCTAGCAGTCCC 59 NA Rattus norvegicus 81 Olr493 ENSRNOG00000032730 ENSRNOT00000045888 3 1 1 60 3 74790166 74790186 CTTGTTCTTGTGTCCTACCTG 59 74790126 74790144 CCTCAGCAGAGTTCATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif4ebp2 ENSRNOG00000055391 ENSRNOT00000082448 2 1 1 68 20 31072126 31072144 CTCAGGACTACTGCACCAC 60 31058367 31072095 AAATGATTCGTGTTCCTCCC 58 NA DesignRelaxed Rattus norvegicus 81 Rprm ENSRNOG00000005109 ENSRNOT00000006784 1 1 1 60 3 39596306 39596324 TGCAGATCGCTGTAATGTG 58 39596264 39596282 CCAAGGAAGAAGATGCCGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr420 ENSRNOG00000007965 ENSRNOT00000010473 3 1 1 60 3 21016793 21016814 TTTCTTCTGTGACCTCTATCCT 58 21016835 21016853 GGTGTTGAGTTCAATGCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gk2 ENSRNOG00000029397 ENSRNOT00000044244 3 1 1 60 14 13751620 13751638 TATACAATGCCGTGGTGTG 58 13751657 13751680 TTATTGAGACTCTCCACAGTAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lpar2 ENSRNOG00000010758 ENSRNOT00000083537,ENSRNOT00000068554 3 2 2 135 16 21347352 21347370 TCATGGTAGCCGTCTACAC 59 21345352 21347255 CCCAGAATGATGACAACTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gnat1 ENSRNOG00000017589 ENSRNOT00000023791 2 1 1 80 8 116436377 116436510 AAGCAGATGAAGATTATCCACC 58 116436318 116436337 AGTGTTGCCATAGATGATGG 58 NA Rattus norvegicus 81 Pkib ENSRNOG00000000811 ENSRNOT00000057364,ENSRNOT00000082043 1 2 3 120 20 40667642 40701728 CACAGATTTACTCTGTGATGAGG 59 40701808 40701826 CTCTGGATGTCGGGTAAGG 59 NA InUTR Rattus norvegicus 81 Zmym6 ENSRNOG00000013865 ENSRNOT00000019135,ENSRNOT00000079732 2 2 2 80 5 145168814 145168833 CCCTCCAGGAACACTAACAG 60 145170001 145182619 CGGTTTGCTTCCATTTCCA 59 NA Rattus norvegicus 81 Mir216b ENSRNOG00000036371 ENSRNOT00000054490 2 1 1 62 14 113101117 113101138 GATGTCACTGAAGAAATCACAC 58 113101159 113101179 ATGCTTGATGTTGTCAGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000023617,ENSRNOT00000090492,ENSRNOT00000088239 3 3 7 80 9 43621063 43623578 GGCTATACAATCTGACAGCA 58 43623621 43623639 GCTTATAACTCTCCACGGC 58 NA Rattus norvegicus 81 Mbip ENSRNOG00000008610 ENSRNOT00000011419 3 1 1 80 6 77240171 77243487 ACAGGACAGCTTAACCTCAG 60 77240110 77240128 CTGGGATGTTGAGAGGCTC 60 NA Rattus norvegicus 81 PVR ENSRNOG00000019202 ENSRNOT00000064305 3 1 1 80 1 80828806 80831009 TTCCCTACCTTATCCACCC 58 80828744 80828763 GTCAGGTTCACGTTAGTGAG 58 NA Rattus norvegicus 81 Edn3 ENSRNOG00000007477 ENSRNOT00000009826 1 1 1 80 3 172857702 172857724 CACTTATAAGGACAAGGAGTGTG 59 172857764 172875987 TAGGGCACAGTCTGTTCAG 59 NA Rattus norvegicus 81 Gmfb ENSRNOG00000047250 ENSRNOT00000075602 2 1 1 60 15 23603586 23603604 CAGATGATGTACGCTGGGA 59 23601472 23603563 ATACCTTAGTTAGCTCGGCG 60 NA DesignNoJunction Rattus norvegicus 81 Rn60_2_2049.2 ENSRNOG00000053381 ENSRNOT00000087001 1 1 1 60 2 185447636 185447656 TTTAACATGACTGATCGGGAC 58 185447596 185447616 GCATATCGTGAAACTTTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cfl1 ENSRNOG00000020660 ENSRNOT00000015962 3 1 1 81 1 220872493 220872708 AAACTGACAGGAATCAAGCAC 59 220872751 220872769 CTAGTTTCTCTGCCAGGGT 59 NA Rattus norvegicus 81 LOC685184 ENSRNOG00000024700 ENSRNOT00000034341 2 1 1 80 3 54735967 54739309 TAAACGAGAACAAGATCACACC 59 54739347 54739368 CGTTGTGGATTAAGAATTCTGC 58 NA Rattus norvegicus 81 Or7e24 ENSRNOG00000046041 ENSRNOT00000072834 2 1 1 60 8 20398020 20398041 AATTACCTGCTTCAAGGATGTG 59 20397981 20398000 AAGAAGTTGTGAAGGGTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr414 ENSRNOG00000033799 ENSRNOT00000052047 1 1 1 60 3 20882974 20882994 CCATCTCCTATACTGGTTGTC 57 20882934 20882953 TCCAGATCACCAAACATCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Enam ENSRNOG00000003672 ENSRNOT00000049462 3 1 1 81 14 21197992 21201153 TCAGCAATGAAGAAGGAAATCC 59 21197932 21197955 ATCTCTTCTGAGTAATAAGGACGG 60 NA Rattus norvegicus 81 Abhd17c ENSRNOG00000012683 ENSRNOT00000017362 3 1 1 86 1 146253429 146253447 CCTCTGATGTCTGGATTGC 58 146249906 146253381 AGATATCTTGTCAATGCTGGG 58 NA Rattus norvegicus 81 RGD1310717 ENSRNOG00000017039 ENSRNOT00000022992 3 1 1 81 1 169348302 169350260 CTGATGGCAGGTACTTTGAC 59 169348240 169348258 TTCCACTGCTCATAGTGCT 59 NA Rattus norvegicus 81 Cers4 ENSRNOG00000001072 ENSRNOT00000001418 3 1 1 80 12 4446767 4446785 GCACCTCTATCCTCTACCA 58 4445222 4445934 AATTCAGGGTCTGATGTGG 57 NA Rattus norvegicus 81 Wnt10b ENSRNOG00000061238 ENSRNOT00000081468 2 1 1 292 7 140452884 140453010 TCGGGCTCTAAGCAATGAG 60 140450794 140450812 AGAAGGAGAACGCACTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Sytl2 ENSRNOG00000049878 ENSRNOT00000042163 3 1 1 80 1 156342187 156343646 CTGAAGAGGAAGACAGCAC 58 156342125 156342144 CTCCGGAACATATTGGAGAG 58 NA Rattus norvegicus 81 Tmem11 ENSRNOG00000005377 ENSRNOT00000007158 3 1 2 200 10 47131706 47131724 ATTGTGGGCAGTAGAGTCC 59 47118013 47131542 CTGACAGGCTAACCCTCTC 59 NA InUTR Rattus norvegicus 81 Trap1 ENSRNOG00000005418 ENSRNOT00000008966 3 1 1 80 10 11742681 11743568 ATTAACACTTTGCAGGCCA 58 11743609 11743630 GATGTAACGGTAGAATTCCTCG 59 NA Rattus norvegicus 81 Rccd1 ENSRNOG00000042059 ENSRNOT00000029471 1 1 1 85 1 142111268 142111286 TTGGAATGAGTCAGGGCAG 60 142110956 142111221 CATTCAATTCTGTGGCTTCCT 59 NA Rattus norvegicus 81 Mrpl42 ENSRNOG00000042740 ENSRNOT00000066322 2 1 1 81 7 36583691 36588007 CACACCCAACCTATCCCTC 60 36583628 36583652 CTTCTAACTTGGTTCTCAGTATCTG 59 NA Rattus norvegicus 81 Hoxd13 ENSRNOG00000001588 ENSRNOT00000002155 2 1 1 61 3 61591084 61591102 AGGTGTATTGTGCCAAGGA 59 61591126 61591979 CCCTGGAAAGGATGATTTCC 58 NA DesignNoJunction Rattus norvegicus 81 RGD1304587 ENSRNOG00000002944 ENSRNOT00000004011 3 1 1 177 10 45559722 45559740 AGAACTACCTGGGCAACTC 59 45559880 45560045 ACGTTCTTGTAACCAAGTGC 59 NA Rattus norvegicus 81 Cldn12 ENSRNOG00000039862 ENSRNOT00000061199 3 1 1 139 4 25686409 25686428 CAGGCTGTTTGGAGAAACAC 60 25689207 25689225 GAAGAGGCCTGCTACAGAG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mre11a ENSRNOG00000009506 ENSRNOT00000012940 3 1 1 80 8 13329686 13330922 TGCAGAGAAGAATGTTCAGC 59 13330964 13330983 TCTTCCTTGTCCACAAACTC 58 NA Rattus norvegicus 81 G6pc2 ENSRNOG00000050620 ENSRNOT00000091674 2 1 2 62 3 55466596 55466614 CGTGGTCAGCTTGAATGTG 60 55466640 55466714 AAGGTGAATGCAAACAGGA 58 NA DesignNoJunction Rattus norvegicus 81 Smpd3 ENSRNOG00000000257 ENSRNOT00000031977 1 1 1 89 19 38241069 38241087 ATCTGTTGAAGGGCAATGG 58 38240757 38241015 AATTCTTCCACCTCAGCCT 59 NA Rattus norvegicus 81 Adam23 ENSRNOG00000012424 ENSRNOT00000040525 1 1 1 80 9 70232882 70238892 TCACAAGACGTATAAGAAGCAC 59 70238930 70238951 GAATCTACAAGGTTGACCACAG 59 NA Rattus norvegicus 81 Cabs1 ENSRNOG00000001950 ENSRNOT00000002670 1 1 1 197 14 21747164 21747185 CAAAGAAGAACCAGATGAACTC 57 21746398 21746420 GCTAACCAACTGTCTAAGAAGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fam124b ENSRNOG00000058883 ENSRNOT00000072054 2 1 1 118 9 90788618 90805176 ATTCTACTGCAGGTCCAGC 60 90788518 90788536 GAGATGGAGCTCAACCTGG 60 NA Rattus norvegicus 81 Ppp2r5b ENSRNOG00000021025 ENSRNOT00000028542 1 1 1 80 1 221598534 221598733 CACTGGAATCAAACCATCGT 59 221598473 221598491 CTCATCAAACAGCTTCCCA 58 NA Rattus norvegicus 81 Hiat1 ENSRNOG00000050407 ENSRNOT00000075340,ENSRNOT00000088123 1 2 2 80 1 69817727 69817746 GTCTAGCATCACCTTTCCAG 58 69817789 69818578 ATTCCCTGAACAACACCCT 59 NA Rattus norvegicus 81 Rn60_12_0368.1 ENSRNOG00000046100 ENSRNOT00000074696 1 1 1 60 12 34868465 34868485 AACTCCCTTTCAAACATGGTC 59 34868425 34868443 TTGGTGTTGTTAGTGGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrgbp ENSRNOG00000045955 ENSRNOT00000073679 3 1 1 98 3 176088302 176088323 CAAGTTCAGCCAGAATATTGGG 60 176088382 176089244 ATCTCAGACTCGTGCAGTG 60 NA Rattus norvegicus 81 Abcf3 ENSRNOG00000001710 ENSRNOT00000002327 3 1 1 80 11 84036506 84036737 CAGTCCTCGACAGTAAATGC 59 84036445 84036463 CTTCTCTGAACGCTTCTCC 58 NA Rattus norvegicus 81 Acvrl1 ENSRNOG00000028713 ENSRNOT00000008673,ENSRNOT00000081047 1 2 2 95 7 142779168 142779393 ACATCCTAGGCTTCATCGC 60 142779452 142779470 CATAGAGGGAGCCATGCTC 60 NA Rattus norvegicus 81 Pga5 ENSRNOG00000047279 ENSRNOT00000072343 2 1 1 80 1 226725873 226728206 TTCTACTTGAGCAGCAAGG 58 226725811 226725831 AAGCTCTCCATGGTAATAGGA 58 NA Rattus norvegicus 81 Csn1s1 ENSRNOG00000055596 ENSRNOT00000088491,ENSRNOT00000087923 3 2 2 80 14 21996853 21997901 GTTCAGATGAGACATCCTATGAG 58 21995115 21995134 GCCATATTGGGAGAGTTGTG 59 NA Rattus norvegicus 81 Tmem59l ENSRNOG00000022432 ENSRNOT00000038139,ENSRNOT00000082319 1 2 2 80 16 20694972 20694990 TGATCATCCTGTGGCTGAG 59 20695034 20695170 GTTCTGCAGTTAGAGGCTG 58 NA Rattus norvegicus 81 Ssuh2 ENSRNOG00000005734 ENSRNOT00000007591 3 1 1 85 4 144309337 144309355 CAACAAGACATGTGCCACC 60 144308537 144309289 CAAACAGGCTGTTCTTCCAC 60 NA Rattus norvegicus 81 Prpf18 ENSRNOG00000018396 ENSRNOT00000091554,ENSRNOT00000024872 2 2 2 80 17 77613569 77615390 ATTGAGGAGTTAGAGGCACTG 60 77615430 77615450 CAGGAACTTGGTGATGATGTC 59 NA Rattus norvegicus 81 Olr601 ENSRNOG00000005863 ENSRNOT00000007679 2 1 1 60 3 76085112 76085130 TCATTCCCATGCTGAATCC 58 76085070 76085088 AGAGCCTCTTTCACATCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam109b ENSRNOG00000042522 ENSRNOT00000066149 2 1 1 256 7 123574150 123574168 CTTTGCAGATCCAGAGGCT 60 123576334 123576352 CACACTCCTCTTGTTCAGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC682905 ENSRNOG00000004661 ENSRNOT00000006169 3 1 1 80 18 86279506 86279555 CGCCAGAGTTATCAGACCA 59 86279444 86279462 TCCTTGGTGGTGATCTTGG 59 NA Rattus norvegicus 81 Mafb ENSRNOG00000016037 ENSRNOT00000021452 2 1 1 60 3 156340638 156340656 CGACTGAACAGAAGACCCA 59 156340596 156340614 ATCTGCTGGTAGTTGCTCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fshb ENSRNOG00000004898 ENSRNOT00000006512 2 1 1 82 3 98091322 98091340 TAGAGAAGGAAGAGTGCCG 59 98089740 98091276 ATACACCAGATCCCTGGTG 59 NA Rattus norvegicus 81 Ppp1r37 ENSRNOG00000017692 ENSRNOT00000023867 2 1 1 80 1 80444141 80444552 TGGATGAAGATGGTGCCTC 60 80444079 80444100 TGTTGAAAGAGATGTTGAGGTG 59 NA Rattus norvegicus 81 Olr664 ENSRNOG00000047937 ENSRNOT00000046926 3 1 1 60 3 77585234 77585253 TTGACTCAATCAACGACAGC 59 77585276 77585294 GCAAAGATCTGTGTCATGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mfsd8 ENSRNOG00000012729 ENSRNOT00000087535,ENSRNOT00000050764 1 2 2 83 2 127723011 127723029 ATATGTCCATGTGCCAGCT 59 127721796 127722964 GCTACATTTCCTGCTCCGA 60 NA Rattus norvegicus 81 LOC103690255 ENSRNOG00000053006 ENSRNOT00000078723 1 1 1 60 4 72292749 72292770 CTTTCAATTACCCTTCTGTCGT 59 72292791 72292809 TACAGCCAGCATCTCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cbfa2t3 ENSRNOG00000014723 ENSRNOT00000019820,ENSRNOT00000081800 2 2 2 80 19 55453586 55453606 GAAGAGTTTCATTCCAAGCTC 57 55449868 55453546 AAGATTAGCCTTCAGAAAGGG 58 NA Rattus norvegicus 81 Tkt ENSRNOG00000016064 ENSRNOT00000021862 1 1 1 80 16 6631101 6631781 GCCAATACAAAGGGCATCTG 60 6631823 6631842 CTGGAAATCCTCGTTGTTGC 60 NA Rattus norvegicus 81 Ptprq ENSRNOG00000056915 ENSRNOT00000081885 3 1 1 80 7 50014134 50014152 TACCGTGTGAAAGTGTCAG 57 50003495 50014093 GCTTATAGACTCATCTTGTCCT 57 NA Rattus norvegicus 81 Izumo1r ENSRNOG00000019894 ENSRNOT00000051471 3 1 1 92 8 13418191 13418764 TACTTTGAGTGCATGCCCT 59 13418117 13418137 GAAGTTAAAGAGCAAGGGCTC 59 NA Rattus norvegicus 81 Slc16a10 ENSRNOG00000000588 ENSRNOT00000000718,ENSRNOT00000087226 3 2 2 101 20 45189915 45193524 TTTGTAAGCTCCATCGAGC 58 45189832 45189850 GTAGTGTCCCAGAATGACC 57 NA Rattus norvegicus 81 Etv3l ENSRNOG00000043511 ENSRNOT00000057490 3 1 1 93 2 186905557 186905575 GATCCAGATGAAGTGGCTC 58 186905631 186905858 TGTAGTAATACCTGAGGGCC 58 NA Rattus norvegicus 81 Vcp ENSRNOG00000034242 ENSRNOT00000046102 3 1 1 80 5 58439633 58441017 GGAGATGTCATCAGCATCC 58 58439571 58439589 CACTGTGTCATCAATGGGT 58 NA Rattus norvegicus 81 Pak3 ENSRNOG00000004676 ENSRNOT00000006459,ENSRNOT00000089141 3 2 2 80 X 114992189 114992209 TGTACAGGAATACAGATCGGC 60 114992248 114998952 TCACAATGCTTCTTAGCTTCTC 59 NA Rattus norvegicus 81 Rn60_18_0774.2 ENSRNOG00000053391 ENSRNOT00000091156 3 1 1 60 18 78283065 78283087 CGATACTGCTCTGTATTCTTCTC 59 78283106 78283125 GGAGACTTACTCAAGCCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tas2r124 ENSRNOG00000021430 ENSRNOT00000030813 1 1 1 60 4 166912235 166912254 CCAGAGAAGATAGAGACCCT 57 166912275 166912295 GAGACCATAATTCCTAAGGCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam96b ENSRNOG00000011865 ENSRNOT00000015811 1 1 1 80 19 552060 552078 GCTCCATTAATGACCCGGA 60 552122 552381 GGTCGCTAACCTGAATTCG 59 NA Rattus norvegicus 81 Hephl1 ENSRNOG00000056092 ENSRNOT00000081616 2 1 1 80 8 13621887 13621908 AGAAGTACCTCAACAAAGATCC 58 13620612 13621847 CATTAATGGCGTGCATTCTG 58 NA Rattus norvegicus 81 Lhx3 ENSRNOG00000018427 ENSRNOT00000025047,ENSRNOT00000045587 3 2 2 102 3 3657616 3657634 GCAAGTGTCTCAAGTGCAG 60 3656846 3657551 CCGAAGCGCTTAAAGAAGTC 60 NA Rattus norvegicus 81 LOC100910419 ENSRNOG00000038741 ENSRNOT00000059172 2 1 1 80 19 41540822 41540841 CGGGAGGAGAAGTATAAAGC 58 41540414 41540779 GAAATATGTCCCGCAGGAG 58 NA Rattus norvegicus 81 Kmo ENSRNOG00000003709 ENSRNOT00000005005 2 1 1 80 13 93691110 93692402 GGAAGATCAGATCGTGTCCA 59 93692443 93692463 GGAATTGCAGACTTCTTTCCC 60 NA Rattus norvegicus 81 Ctrc ENSRNOG00000013745 ENSRNOT00000081899,ENSRNOT00000018393 1 2 2 80 5 160397235 160397253 GACTGGTGGTTCATCAAGG 58 160395331 160397191 AGAATCTCCGTTACAGGCA 58 NA Rattus norvegicus 81 Stmn2 ENSRNOG00000011705 ENSRNOT00000015720 3 1 1 80 2 95443547 95443567 GTCTATGCTGTCACTGATCTG 58 95439718 95443505 ACCTCCATGTCATCGTAGG 59 NA Rattus norvegicus 81 Olr1498 ENSRNOG00000055339 ENSRNOT00000082426 2 1 1 60 10 60542258 60542278 ATCATTCTCCTGGTTCAACTG 58 60542218 60542239 TGCTAAGAAACAAGTACATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mbp ENSRNOG00000016516 ENSRNOT00000089879 1 1 5 90 18 79352051 79372052 GGCCAGTAAGGATGGTGAG 60 79372106 79372124 ATCACTGTCTTCTGAGGCG 60 NA Rattus norvegicus 81 Zfp362 ENSRNOG00000043364 ENSRNOT00000007761 2 1 1 100 5 146969345 146973908 AAAGGACCCTCTAGGATGG 58 146969122 146969141 TTAATCAGGACCAGGTTGTC 57 NA Rattus norvegicus 81 Car5a ENSRNOG00000019098 ENSRNOT00000025848 3 1 1 82 19 54755047 54755065 GTCCTGCAGATACCTCTGG 59 54742584 54755001 CACCACTGATCCCTGACTC 60 NA Rattus norvegicus 81 Cog4 ENSRNOG00000017745 ENSRNOT00000023927 2 1 1 80 19 43377154 43381760 AATTGAACCAAGGGAGCTG 58 43377092 43377113 AGGAAGCGTAAGTACAATTCAC 59 NA Rattus norvegicus 81 AABR07017681.1 ENSRNOG00000049482 ENSRNOT00000073984 1 1 1 67 15 30019004 30019022 CTAGGCCTTCACCTGTCTG 60 30018818 30018836 CTTTGTTTCACCTGCTGCT 59 NA DesignNoJunction Rattus norvegicus 81 Nell1 ENSRNOG00000015675 ENSRNOT00000056030 1 1 1 80 1 105611630 105611648 CTTGCCCTCCTTTGAACTG 59 105611692 105630674 AGTTATGACCTGGGCAGAC 59 NA Rattus norvegicus 81 Uck1 ENSRNOG00000011467 ENSRNOT00000015792 3 1 1 80 3 11276058 11276223 TGACCCACTCAAGGTTACC 59 11275996 11276016 TGTAGAATACCAAGATGCCCT 59 NA Rattus norvegicus 81 RGD1564212 ENSRNOG00000042119 ENSRNOT00000060357 3 1 1 103 15 30462686 30462704 TTCACTAGTGGTCCTGTGG 59 30462950 30462968 GAGAAGTCTTGGCTCCCTC 60 NA DesignNoJunction Rattus norvegicus 81 Cd5l ENSRNOG00000023068 ENSRNOT00000057022 2 1 1 80 2 186692839 186692857 TTCAGGACTGCCCTTTCAG 60 186692900 186693506 CAAAGGGATCTTCGCATTCC 59 NA Rattus norvegicus 81 Olr559 ENSRNOG00000045869 ENSRNOT00000037577 1 1 1 60 3 75390284 75390305 TAGGATTCTGTACAGCATTTGG 58 75390325 75390344 TATAGCACAAGCCAGAAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r35 ENSRNOG00000050881 ENSRNOT00000074735 3 1 1 102 12 21988367 21988385 GAGAAGTTGGCGATGTTGC 60 21988192 21988210 ACAGAGAATCTGGGTTGCA 59 NA DesignNoJunction Rattus norvegicus 81 LOC679582 ENSRNOG00000042286 ENSRNOT00000068623 2 1 1 80 13 109675927 109675946 GCAGTATCCCAGAAGGATCC 60 109675988 109677088 ACAGGGTGATACTGCTTCAG 60 NA Rattus norvegicus 81 Shmt1 ENSRNOG00000005275 ENSRNOT00000007092 3 1 1 80 10 47036943 47037966 ATTCTACAGAAAGGGTGTGC 58 47036882 47036900 GAGTTGATGAGGGACTCCA 58 NA Rattus norvegicus 81 Slc27a2 ENSRNOG00000010128 ENSRNOT00000067700,ENSRNOT00000013605 1 2 2 80 3 119050622 119052060 CCTGAGAATACAAGATACCATTGAG 59 119052098 119052116 GGGTTAAAGCCCTCTTCCA 59 NA Rattus norvegicus 81 Enthd2 ENSRNOG00000028161 ENSRNOT00000038993 3 1 1 80 10 109277681 109278409 AGCTTTCTACATAGGCTCCC 59 109277620 109277639 CTCTTCAAACAGGTAGCCTG 58 NA Rattus norvegicus 81 Pdp2 ENSRNOG00000012343 ENSRNOT00000016462 2 1 1 89 19 599454 601399 GGACGAGGATACTAGGCTG 59 599383 599402 ATTGAAGATCCGGTAGGACG 59 NA InUTR Rattus norvegicus 81 Capn6 ENSRNOG00000004882 ENSRNOT00000006638 2 1 1 80 X 115054133 115054152 TGATGACCCTCTGATGAACC 59 115052729 115054094 GTGAAGATGTACTGAGGATTCTG 59 NA Rattus norvegicus 81 LOC100910467 ENSRNOG00000048508 ENSRNOT00000072814 1 1 1 60 15 35942974 35942993 ATTGATCTCTGCCATTCCAC 58 35943016 35943034 TCTCTGCCACAAAGTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igip ENSRNOG00000049067 ENSRNOT00000073131 3 1 1 60 18 29124480 29124501 CCATATTTGCTGTCATGTTCTC 58 29124522 29124540 GCTTGGTTTCCACATGGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spry2 ENSRNOG00000010058 ENSRNOT00000013342 1 1 1 169 15 90174611 90175647 TGCTGTTGGAGGAGTTCAG 60 90174460 90174478 CTGGGTAAGGGCATCTCTG 60 NA InUTR Rattus norvegicus 81 Tlx3 ENSRNOG00000004976 ENSRNOT00000006676 3 1 1 126 10 18130543 18130561 AAATCGGAGGACCAAGTGG 60 18129513 18129531 CTGGATGGAGTCGTTGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Pop7 ENSRNOG00000025310 ENSRNOT00000001913 2 1 1 91 12 22259897 22260115 GGGAAGAAGGACTTAGAGCA 59 22260169 22260187 GTTTCCGAAGGGTGTACTC 58 NA InUTR Rattus norvegicus 81 Rpa3 ENSRNOG00000008309 ENSRNOT00000011123 2 1 1 80 4 34280184 34281086 AATTGATGGAGCCACTGGA 59 34280122 34280141 ATAGTATGGTTGCCTTGGCT 59 NA Rattus norvegicus 81 Lrrc57 ENSRNOG00000009143 ENSRNOT00000049756 1 1 1 80 3 112384032 112384052 CAGATTCGGAGTATACCTGAC 58 112367785 112383993 GATCTGAGATATCTGGTTCTGG 58 NA Rattus norvegicus 81 Matn2 ENSRNOG00000006060 ENSRNOT00000008361 2 1 1 80 7 73205397 73205417 CTATGCAGAAGACTTCAGCAC 59 73205456 73206558 TCAGAGTCTTCTAGAGCTTCAC 59 NA Rattus norvegicus 81 Mslnl ENSRNOG00000039339 ENSRNOT00000060286 1 1 1 80 10 15115380 15115471 CAAACTTGCTCAGATCTACCC 59 15115512 15115531 AGGGAGTAGAGGTAGACCAG 59 NA Rattus norvegicus 81 Wdr62 ENSRNOG00000049708 ENSRNOT00000047120,ENSRNOT00000081282 1 2 2 80 1 91016021 91016039 ATGAGCTGATCAAGGTGGA 58 91016083 91018089 GCAAAGTCACTCCTGTCTC 58 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000057062,ENSRNOT00000089339,ENSRNOT00000087088,ENSRNOT00000022292,ENSRNOT00000066004,ENSRNOT00000079954 2 6 7 81 2 186232238 186232259 CACCGAAGCCATTAAACTAGAC 60 186164889 186232198 GTCTTGCAGACAAGTAACCTG 59 NA Rattus norvegicus 81 Plekhg6 ENSRNOG00000019528 ENSRNOT00000026441 3 1 1 80 4 157890993 157891373 GACACAAGGAGATGAATCGC 59 157890932 157890951 TCAGGTAGATCAGCTCAGTG 59 NA Rattus norvegicus 81 Efcab11 ENSRNOG00000053317 ENSRNOT00000082444 3 1 1 80 6 123894057 123894076 AACAAAGGCTACTTAAGCCG 59 123889190 123894014 CGCTTCTATCTTGGAGGGT 59 NA Rattus norvegicus 81 Olr697 ENSRNOG00000029675 ENSRNOT00000046271 3 1 1 60 3 78216249 78216269 CTGTTTGTCACATTCTTGCTC 58 78216209 78216228 CCATTATGAGCAGATTGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asphd1 ENSRNOG00000027213 ENSRNOT00000055016 3 1 1 89 1 198381380 198381398 TTTCCGTTCTACTGCCTGG 60 198379969 198381327 GAGGGATCTTCAGACCCAG 59 NA Rattus norvegicus 81 AABR07042599.1 ENSRNOG00000050134 ENSRNOT00000071393 1 1 1 80 19 212503 212525 CAACTTAGAGATGGAGAACACTG 59 212564 213216 AGCAGGTTTCTAGAGAAGGT 58 NA Rattus norvegicus 81 RGD1310507 ENSRNOG00000009434 ENSRNOT00000083855,ENSRNOT00000056483 2 2 3 80 8 111744889 111746494 AGAACACAGATGGAAAGAACC 58 111744829 111744847 TACCATCAAGGCAGAGGAG 59 NA Rattus norvegicus 81 Rnf148 ENSRNOG00000042462 ENSRNOT00000064228 3 1 1 63 4 50688226 50693855 GTCAGATGTCACAGTTAATGGA 58 50688184 50688202 AGACCTATGAGCTGAAGGG 58 NA DesignNoJunction Rattus norvegicus 81 Cyp2s1 ENSRNOG00000020743 ENSRNOT00000028177 2 1 1 80 1 82596475 82596645 CCCTACTCCTTAGGTAAGCG 59 82596414 82596435 CAAGATGGAAGTGAAGAAGAGC 59 NA Rattus norvegicus 81 Maml2 ENSRNOG00000005879 ENSRNOT00000036338 1 1 2 80 8 12161675 12241777 CACAGACAGGATCAACACTC 58 12241819 12241838 AGTGTTTGGATTTGAGCAGG 59 NA Rattus norvegicus 81 Fam92b ENSRNOG00000021714 ENSRNOT00000035651 1 1 1 80 19 53745392 53745410 CGGTGGAGGTATACTCCAG 59 53744233 53745348 TCTTGGCTCTGAAGTCCTG 59 NA Rattus norvegicus 81 Fam120b ENSRNOG00000058790 ENSRNOT00000082790,ENSRNOT00000084017 2 2 2 94 1 57351364 57358591 AATCTTAAAGGTTGCCAGGA 57 57358645 57358666 GGGTGTTACTACACTCTATCTC 57 NA Rattus norvegicus 81 Olr434 ENSRNOG00000008003 ENSRNOT00000010520 3 1 1 60 3 21363370 21363390 TGACCCTCTTCCTGATATTCC 59 21363412 21363430 ATTCCCACATTTCCCAGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxo24 ENSRNOG00000024922 ENSRNOT00000038397 2 1 1 80 12 22147394 22147999 ACCCTCTATATCACGGACCA 60 22148041 22148060 AAGGGTCCCAAAGAGATCAC 60 NA Rattus norvegicus 81 Olr715 ENSRNOG00000057668 ENSRNOT00000084255 3 1 1 60 3 78595339 78595358 CTCTTATTGGTGGTGTCCTG 58 78595298 78595318 CAGAGATCACTTGAAGCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col27a1 ENSRNOG00000007657 ENSRNOT00000010333 1 1 1 80 5 79165941 79167439 ATGGCGGATGGTATCTACTG 59 79167480 79167500 ATGTGTAAAGTTGCAGGAGAC 59 NA Rattus norvegicus 81 Kif4a ENSRNOG00000038035 ENSRNOT00000078233 1 1 1 80 X 70520310 70521704 GGAAGTAGACACTCAAGAGCA 60 70521746 70521764 TGACGGAGAGCATGTTGAG 60 NA Rattus norvegicus 81 Ntf3 ENSRNOG00000019716 ENSRNOT00000087115 2 1 3 91 4 158637987 158703961 TCTGCCACGATCTTACAGG 59 158637914 158637932 ATGTTGTTGCCTTGGATGC 59 NA Rattus norvegicus 81 Cacna1d ENSRNOG00000013147 ENSRNOT00000048459,ENSRNOT00000040759,ENSRNOT00000047737,ENSRNOT00000051371 3 4 4 80 16 6245552 6245571 GCTTTGATGTCAAAGCCCTC 60 6241228 6245511 CAACTTGTAAACTGGGCACTC 60 NA Rattus norvegicus 81 Ache ENSRNOG00000050841 ENSRNOT00000089392 2 1 3 83 12 22473604 22473623 ATACGTGAGCCTGAACCTG 60 22473538 22473557 GAGAAACGATTCCAGAAGCG 59 NA Rattus norvegicus 81 Dnajb12 ENSRNOG00000030408 ENSRNOT00000044805 3 1 1 80 20 29460919 29460939 ACACAGACATGTACCACAGAG 60 29460978 29462011 TCTCCAGGGATTTCATAGTCTC 59 NA Rattus norvegicus 81 Slc25a45 ENSRNOG00000030616 ENSRNOT00000051979 1 1 1 80 1 221243361 221243383 CTACGTTGGGAATGTACTTTGTC 60 221243423 221243560 TGGCTGAACTGGGATTCTG 60 NA Rattus norvegicus 81 Vgll4 ENSRNOG00000007822 ENSRNOT00000010338 2 1 1 89 4 146839025 146839045 GCTGTTTATGAAGATGGACCT 58 146806750 146838975 GAAGCTTCACCTTCATAGCA 58 NA Rattus norvegicus 81 RGD1559726 ENSRNOG00000034073 ENSRNOT00000047841 1 1 1 60 18 84162524 84162543 GAGACAAAGGATCTGGAGGG 60 84162589 84162611 AATCTAGACCATTCTCTGAGGTG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000072962,ENSRNOT00000070848,ENSRNOT00000067689,ENSRNOT00000073853,ENSRNOT00000060253,ENSRNOT00000060250 3 6 10 82 15 32855314 32855333 GAATCCTCCTGCTGAAAGTG 59 32855377 32855973 AGTCACGCTCTTTCAATCTC 58 NA InUTR Rattus norvegicus 81 LOC100910838 ENSRNOG00000024641 ENSRNOT00000029041 3 1 1 88 12 22033369 22033387 GATCCACCATGATCGAGGA 59 22033438 22034203 CTGTGAAATCTCCATTCCGG 59 NA Rattus norvegicus 81 Zbtb16 ENSRNOG00000029980 ENSRNOT00000045356 1 1 1 80 8 52988474 52993732 TCACATACAGGTGACCACC 59 52988412 52988430 CTTGTGGCTCTTGAGTGTG 59 NA Rattus norvegicus 81 Pcdhb15 ENSRNOG00000020054 ENSRNOT00000027164 3 1 1 60 18 30551623 30551641 TCAGTCACCTGAAGACACC 59 30551664 30551683 TAAGTCCCTAGCAGACACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ice2 ENSRNOG00000010160 ENSRNOT00000013742 3 1 1 80 8 75660348 75661839 ATTATGTAGCTTGCAGGAAGG 58 75661879 75661899 TCTGAGGTCTTGTAGATCAGG 58 NA Rattus norvegicus 81 Morn4 ENSRNOG00000027156 ENSRNOT00000037490 3 1 1 84 1 261324587 261325175 GATGGGTCAAGGTATGAGG 57 261324521 261324542 CAAAGGTCATGTTGTCATATCG 58 NA Rattus norvegicus 81 LOC100909526 ENSRNOG00000048864 ENSRNOT00000043099 1 1 1 80 7 10500316 10500335 TTGGATCCTTCCCAGAAGAG 59 10499964 10500278 CAATTTGTAGCCTATAGCAGTGAG 60 NA Rattus norvegicus 81 Bcl6 ENSRNOG00000001843 ENSRNOT00000002522 1 1 1 80 11 80275659 80275677 TTCAGGCACCTTCAGACTC 59 80275718 80277875 CAGGTTACACTTCTCACAATGG 59 NA Rattus norvegicus 81 Sfxn5 ENSRNOG00000037871 ENSRNOT00000057537 3 1 1 80 4 116995322 117008828 CAGATGTCAGAGATTGAAACCTC 59 116995264 116995283 CTTGTTGTACACCACTGTCC 59 NA Rattus norvegicus 81 Olr665 ENSRNOG00000051939 ENSRNOT00000090062 2 1 1 60 3 77605594 77605612 GGCCTATGACCGTTATGTG 58 77605552 77605575 CCTGTTCATAATGGAAGAGTAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Padi2 ENSRNOG00000007574 ENSRNOT00000010183 2 1 1 80 5 159465456 159467930 CAGTACTTTCAGCGCTGTC 59 159467971 159467992 GTCAATGATGTCCTTCTCAGTC 59 NA Rattus norvegicus 81 Id2 ENSRNOG00000007237 ENSRNOT00000009491 2 1 2 140 6 44361546 44361564 GACAGAACCAAACGTCCAG 59 44360325 44361155 CCCAAATGCCATTTATTTAGCC 59 NA InUTR Rattus norvegicus 81 Ccnd1 ENSRNOG00000020918 ENSRNOT00000028411,ENSRNOT00000088588 3 2 2 84 1 218098553 218099962 CTGGATGCTAGAGGTCTGC 60 218098487 218098505 AGACAAGAAACGGTCCAGG 60 NA Rattus norvegicus 81 Mylk2 ENSRNOG00000008235 ENSRNOT00000011255 3 1 1 80 3 148392356 148392457 TCATGGAGTACATTGAGGGC 60 148392500 148392518 CCATGGTATCCACTTCCGT 59 NA Rattus norvegicus 81 Slc39a3 ENSRNOG00000045524 ENSRNOT00000073221 1 1 1 73 7 11548373 11548391 TTTAATGCACTGCTGCCTG 59 11550197 11550215 TAGTCAGTGCTGATGTGGC 60 NA DesignNoJunction Rattus norvegicus 81 Syt9 ENSRNOG00000019613 ENSRNOT00000026607 1 1 1 80 1 171658502 171658520 CACTTCTTCGACTTGGCTG 59 171658562 171715880 GTCCACATTATCGTTGGTGAC 59 NA Rattus norvegicus 81 Sub1 ENSRNOG00000050563 ENSRNOT00000074446 1 1 1 81 2 62029775 62029793 TTCTAGAGCACTGGCATCC 59 62025159 62029736 GACATATCTCATCTTTCCAATCTGG 60 NA Rattus norvegicus 81 Tmem198 ENSRNOG00000020061 ENSRNOT00000027208 2 1 1 80 9 82678949 82678967 TGACCCTGCTTATAGACGC 59 82679010 82679309 AAGCTCTGGATGTAACTCGG 60 NA Rattus norvegicus 81 RGD1565635 ENSRNOG00000016417 ENSRNOT00000021981 2 1 1 66 18 750863 750881 GATGTGATGCAGGAAACCT 58 751085 751105 CAAGGATACAGTCTTCTTGCT 58 NA DesignNoJunction Rattus norvegicus 81 LOC100910581 ENSRNOG00000024505 ENSRNOT00000035372 3 1 1 102 12 21727858 21727876 GAGAAGTTGGCGATGTTGC 60 21727683 21727701 ACAGAGAATCTGGGTTGCA 59 NA DesignNoJunction Rattus norvegicus 81 AABR07017599.1 ENSRNOG00000047018 ENSRNOT00000072403 1 1 1 84 15 29064790 29161835 AGCTACACTGGGTTAGCAG 59 29161883 29161901 TTGAAAGAGGCTTTGGCTC 58 NA Rattus norvegicus 81 Cpa3 ENSRNOG00000011181 ENSRNOT00000014970 1 1 1 80 2 105047784 105047803 GGTATTCCGTGTGAAACTCC 59 105044947 105047742 CAGAAGTCAAGCTCAATGGT 58 NA Rattus norvegicus 81 Pm20d1 ENSRNOG00000039745 ENSRNOT00000009838 1 1 1 80 13 48582190 48582457 ATTGTAAGCAGGGTAATGGAG 58 48582499 48582517 TGCATTGAACATGGTGAGG 59 NA Rattus norvegicus 81 Cdx4 ENSRNOG00000002974 ENSRNOT00000003973 2 1 1 64 X 74171844 74171862 AGAGCTGGCAGTTAACCTG 60 74172983 74173001 CTCTGCGATTCTGAAACCA 58 NA DesignNoJunction Rattus norvegicus 81 Cdx4 ENSRNOG00000002974 ENSRNOT00000003973 3 1 1 64 X 74171843 74171861 CAGAGCTGGCAGTTAACCT 60 74172982 74173000 TCTGCGATTCTGAAACCAG 58 NA DesignNoJunction Rattus norvegicus 81 Nudt5 ENSRNOG00000017741 ENSRNOT00000023892,ENSRNOT00000082669 3 2 2 101 17 76399818 76401197 TTTCAGAGGAGTTGATCTCAG 57 76394927 76394946 TAAGCTTCACTGTTTCCCAG 58 NA Rattus norvegicus 81 Zfyve1 ENSRNOG00000008614 ENSRNOT00000011662 2 1 1 80 6 107077935 107077955 AAGAGGAGGAAGATGACAGAG 59 107056456 107077898 CTCTTCATTTGTTACCTGGATCTC 59 NA Rattus norvegicus 81 Cox7b ENSRNOG00000054689 ENSRNOT00000090007 2 1 1 81 X 77065513 77069155 CTAAGTCGTCTCCAAGTTCG 58 77069198 77069217 TGTCATGGAAAGTAGGTGTC 57 NA Rattus norvegicus 81 Rpusd4 ENSRNOG00000011567 ENSRNOT00000015670 3 1 1 105 8 36474697 36474715 ACATCAGCTCCGAGTTCAC 60 36474783 36476305 GCCAGCAGAAAGTTTCTGAG 60 NA Rattus norvegicus 81 LOC102551435 ENSRNOG00000029529 ENSRNOT00000002334 1 1 1 86 11 83979254 83985183 GTATCCTCGTGCTAGGCTG 60 83979186 83979205 AGTAATCCACACTGGTCACG 60 NA Rattus norvegicus 81 Gucd1 ENSRNOG00000049952 ENSRNOT00000072696 1 1 1 80 20 14101739 14101954 AGTGGAGAAATGCACAGTG 58 14101998 14102016 GAGTTCACCAAGACGATGG 58 NA Rattus norvegicus 81 Chtf18 ENSRNOG00000019174 ENSRNOT00000026139 2 1 1 80 10 15096303 15096891 TGCTCAGTGATGACTTTACCA 60 15096243 15096261 GCCTCTCATGACCAAACAC 59 NA Rattus norvegicus 81 Fam60a ENSRNOG00000049943 ENSRNOT00000083310,ENSRNOT00000089160,ENSRNOT00000071930 3 3 3 80 4 183408873 183408892 GACTCTGTCTGGAAACAGGA 59 183406538 183408830 TGAGCATCAGAATTGTGGC 59 NA Rattus norvegicus 81 Adipoq ENSRNOG00000001821 ENSRNOT00000089988,ENSRNOT00000002492 3 2 2 95 11 81333957 81333977 GATATCCTGGTCACAATGGGA 59 81332018 81333900 TAGGACCAAGAACACCTGC 59 NA Rattus norvegicus 81 Tcea3 ENSRNOG00000011794 ENSRNOT00000015776 2 1 1 80 5 154630042 154633458 TTGTACCTATAACCAGGTGCA 59 154633499 154633518 CGATTCCCACATTCATTGCA 59 NA Rattus norvegicus 81 Cwc22 ENSRNOG00000012651 ENSRNOT00000037684 2 1 1 80 3 64750843 64750861 CAGGAAGCAGGAAGTAGTG 58 64749326 64750800 TGATTTCTGTCCTCCTTCCT 58 NA Rattus norvegicus 81 Ccdc132 ENSRNOG00000009894 ENSRNOT00000067087 3 1 1 80 4 28474667 28475823 TTGGAGCAAATTGAGGAACAG 59 28475862 28475883 AACCTTGGTGTAATGGTTAACG 59 NA Rattus norvegicus 81 Traf1 ENSRNOG00000048914 ENSRNOT00000072400 1 1 1 80 3 14017210 14017230 GGATCTGTCCTAAATGCAGAG 58 14009610 14017168 CAGGGAGAACCTTCTCCTG 59 NA Rattus norvegicus 81 Zfp316 ENSRNOG00000001094 ENSRNOT00000052327 2 1 1 100 12 13354973 13354991 CTCTTTGGAGGAGTGGGAG 59 13355054 13355499 TTGGGTATCCCAAGGAAACC 60 NA Rattus norvegicus 81 Amtn ENSRNOG00000003776 ENSRNOT00000065778 1 1 1 80 14 21294233 21295804 GACCTGCCATTGTTCAACC 60 21294171 21294189 TTGTCCATTCAGTGGTCCC 60 NA Rattus norvegicus 81 Itgb3bp ENSRNOG00000009116 ENSRNOT00000012947,ENSRNOT00000090393 1 2 2 84 5 118510129 118510149 GGAACTTATCAATTGAGCCCA 58 118500888 118510086 TTCTTGTTCCATTTGATGGTCC 59 NA Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000073636 1 1 8 163 3 100788154 100788172 TTTGATGAGACCGGGTTCC 60 100788299 100815572 CTCACCTGGTGGAACTCAG 60 NA Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000077703 1 1 8 80 3 100770323 100815562 TAAGCCGCAAAGAAGTTCC 59 100815603 100815624 GCAACCGAAGTATGAAATAACC 58 NA InUTR Rattus norvegicus 81 Tnfrsf11b ENSRNOG00000008336 ENSRNOT00000011344 3 1 1 80 7 93802167 93802186 TCCAGCTACTTAAGCTGTGG 60 93800430 93802125 CACAGAGGTCAATGTCTTGG 59 NA Rattus norvegicus 81 Ppil3 ENSRNOG00000013636 ENSRNOT00000018284 2 1 1 80 9 65326867 65326885 ACTGCATACAGATGTGGGA 58 65325169 65326825 AGAGCCAAGAAATTCTCACAG 58 NA Rattus norvegicus 81 Mif4gd ENSRNOG00000003837 ENSRNOT00000005198 2 1 1 80 10 104160869 104163118 TGCACTCAAAGATCCAGGT 59 104160807 104160825 AATACGCAGTCCTGCAGAG 60 NA Rattus norvegicus 81 Cyb5d2 ENSRNOG00000024553 ENSRNOT00000036942 1 1 1 80 10 59355140 59355159 CCTCCTCTGAGATATTGACG 57 59348572 59355097 TTCCAATCAGTCTTCCGAC 57 NA Rattus norvegicus 81 Zscan20 ENSRNOG00000005886 ENSRNOT00000008887 1 1 1 85 5 146768502 146768520 CAGTAGACAAGCCCAGGAG 60 146767297 146768453 TTGAAGCTGGAACTCCCAG 60 NA Rattus norvegicus 81 LOC100912283 ENSRNOG00000049757 ENSRNOT00000074839 3 1 1 81 10 70655930 70658457 ATAAACACGGCGTGAAGAC 59 70658502 70658520 GAATCGTCCTCCAGTTCCT 59 NA Rattus norvegicus 81 Cyp2d2 ENSRNOG00000008988 ENSRNOT00000012413 3 1 1 80 7 123654980 123655619 AGCTTATACAAGCTTCGAAGC 59 123654920 123654939 CCCGTTGATCACAACTACAG 59 NA Rattus norvegicus 81 Haus1 ENSRNOG00000046666 ENSRNOT00000073597 2 1 1 80 18 74191650 74191668 TCCAGAACATGGACTTCCT 58 74191240 74191606 TGGATGAAAGTTGCTCCTC 58 NA Rattus norvegicus 81 Rnf166 ENSRNOG00000013777 ENSRNOT00000018591 2 1 1 84 19 55294666 55294684 GAAAGTGGACAAAGCCACC 59 55293084 55294619 CAGTGTCACCTTCTTGTTGC 60 NA Rattus norvegicus 81 Ube2d1 ENSRNOG00000000611 ENSRNOT00000000750 2 1 1 80 20 18574806 18575958 ACCACCAAAGATTGCTTTCAC 60 18575995 18576018 CTCAGGATGTCAAGACAAATACTC 59 NA Rattus norvegicus 81 Mmp9 ENSRNOG00000017539 ENSRNOT00000023965,ENSRNOT00000088776 1 2 2 80 3 161416521 161416541 CATGTATCACTACCACGAGGA 59 161416582 161417390 TTAGAGCCACGACCATACAG 59 NA Rattus norvegicus 81 Acad11 ENSRNOG00000010940 ENSRNOT00000038383,ENSRNOT00000081281 1 2 2 80 8 112626283 112626733 TCAAGAGAACACAGGAATACC 58 112626773 112626793 GGGAGATTAGGATCAATTCCC 58 NA Rattus norvegicus 81 Acad11 ENSRNOG00000010940 ENSRNOT00000038383,ENSRNOT00000081281 2 2 2 80 8 112659205 112659970 CTCCCTCTGTATCCAGACAC 59 112660008 112660031 AAGGCCTTATTAACTCTACTCCAG 60 NA Rattus norvegicus 81 Hist1h2bl ENSRNOG00000059382 ENSRNOT00000072195 1 1 1 60 17 44738115 44738133 CGTGAACGACATCTTCGAG 59 44738073 44738091 CTTGTTGTAATGCGCCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr466 ENSRNOG00000060260 ENSRNOT00000077607 3 1 1 60 3 73274863 73274882 CCTTATGTGTTTGGCTTCCT 58 73274905 73274923 AAGACAGGTGGAAAGTGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acsf3 ENSRNOG00000015077 ENSRNOT00000020313 2 1 1 80 19 55630224 55630243 CTGGAGGCTATAAAGTCAGC 58 55630285 55630723 CAATTACAGCGACATCTGTG 57 NA Rattus norvegicus 81 Cxcl17 ENSRNOG00000037814 ENSRNOT00000057433 1 1 1 84 1 82269991 82270777 CTGCAAAGATTGGTCCCTG 59 82269925 82269943 ATGATCACAGGGACACTGC 60 NA Rattus norvegicus 81 Mettl3 ENSRNOG00000013111 ENSRNOT00000017720 1 1 1 80 15 28715027 28715045 CCTCAGATGTTGACCTGGA 59 28714103 28714983 CCTGACTGACCTTCTTGCT 59 NA Rattus norvegicus 81 Mettl3 ENSRNOG00000013111 ENSRNOT00000017720 3 1 1 80 15 28713985 28714003 ATGGGACCAAGGAAGAGTG 59 28713368 28713944 TGTTGATAATCCGTCTGAAGTG 59 NA Rattus norvegicus 81 Cacnb1 ENSRNOG00000004518 ENSRNOT00000006098,ENSRNOT00000082974 2 2 2 83 10 85958386 85958405 AGTCTCAATCCAAACACCTC 58 85957918 85958343 GGATTATGTCAAACATTTCGGG 58 NA Rattus norvegicus 81 Cacnb1 ENSRNOG00000004518 ENSRNOT00000006098,ENSRNOT00000082974 3 2 2 84 10 85958386 85958406 AAGTCTCAATCCAAACACCTC 58 85957918 85958343 GGATTATGTCAAACATTTCGGG 58 NA Rattus norvegicus 81 Med22 ENSRNOG00000005059 ENSRNOT00000006720 2 1 1 81 3 4866569 4866588 ATAACAAGCGGCTCAAAGAC 59 4865355 4866525 TCATCCTCAATCTTGGCCG 60 NA Rattus norvegicus 81 Ubiad1 ENSRNOG00000009575 ENSRNOT00000012692 1 1 1 80 5 165258445 165258463 CTGAAACTGGAGCACTTGG 59 165249762 165258404 CTTGAATCCAATTCCTCCTGTG 59 NA Rattus norvegicus 81 Cox8b ENSRNOG00000014656 ENSRNOT00000019679 1 1 1 80 1 213648932 213650092 CACTTCTGCCATGGATCAG 58 213648870 213648888 TGGGATAAGACCCATCCTG 58 NA Rattus norvegicus 81 Rft1 ENSRNOG00000021805 ENSRNOT00000035542 1 1 1 80 16 6717241 6718982 GTAGTGAATGTCAGACTAACACTG 59 6719021 6719039 ACTCAGACAAGCTCTTCGG 59 NA Rattus norvegicus 81 AABR07060952.1 ENSRNOG00000061169 ENSRNOT00000058282 2 1 1 80 4 101639707 101640093 CTGGATCCAGGAAACTAGAGG 59 101640134 101640153 GAGACTGATTGTCCAATGGC 59 NA Rattus norvegicus 81 Arhgap8 ENSRNOG00000033570 ENSRNOT00000017420 3 1 1 80 7 125753359 125753380 AGGCATTGTATGTTGTACATCC 59 125747957 125753320 CAAACTTGTGACTGATGAGGG 59 NA Rattus norvegicus 81 Rcor3 ENSRNOG00000046445 ENSRNOT00000073588 2 1 1 80 13 110863879 110863899 GTTGGGATGAGAGTCGGAG 60 110856290 110856313 GTCTTTATCTGTGTACTTGGTAGC 59 NA Rattus norvegicus 81 Morc4 ENSRNOG00000060846 ENSRNOT00000089115 1 1 1 80 X 111144436 111144758 GAGATGACCTAGAAAGGGCTC 60 111144376 111144395 GAGGGAGGACAGAAGTAAGG 59 NA Rattus norvegicus 81 Ndp ENSRNOG00000046042 ENSRNOT00000074275 1 1 1 80 X 6273888 6281569 ATGTAGCTCAAAGATGGTGCT 60 6281611 6281629 AAGGACACCAAGGGTTCAG 60 NA Rattus norvegicus 81 Polr2j ENSRNOG00000001430 ENSRNOT00000001941 3 1 1 86 12 23588301 23590062 GGAACATCATTAAATCGCAGCT 60 23588236 23588254 TGATCTTGTGCTCCAAGGG 60 NA Rattus norvegicus 81 Tdrkh ENSRNOG00000020860 ENSRNOT00000028299,ENSRNOT00000081335 1 2 2 80 2 195671127 195671148 GAGTGACTTTCTAAGTCTCCCA 59 195671189 195671829 TCTTCCCACTCTTCACCTG 59 NA Rattus norvegicus 81 Hist1h1a ENSRNOG00000017175 ENSRNOT00000023054 3 1 1 60 17 43614383 43614404 CTAAGAAACCCAAGAAGACTGC 59 43614344 43614362 TTCTTCGGTGTCTTGACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc6a14 ENSRNOG00000005687 ENSRNOT00000007967 2 1 1 80 X 120631251 120633591 AGTATTGGGATAAAGTGACGCT 60 120633631 120633650 GGCAAAGTGCTAAGTACCAC 59 NA Rattus norvegicus 81 Csn1s2b ENSRNOG00000055083 ENSRNOT00000087672 3 1 1 83 14 21901551 21902860 ATCCAAGACTACGTGACCA 58 21901486 21901505 TTTCTGGTATTGCTGGAGAG 57 NA Rattus norvegicus 81 Cks1b ENSRNOG00000042561 ENSRNOT00000055533 2 1 1 80 2 188742565 188742584 CTGAATGGAGAAATCTCGGT 57 188741940 188742523 GTAAGATGTGAGGTTCTGGT 57 NA Rattus norvegicus 81 Oma1 ENSRNOG00000007214 ENSRNOT00000009516 3 1 1 80 5 122885938 122900022 GACTCATACCACAGGCTCTC 60 122900065 122900083 TGAACAGTAACCGAGGGTC 59 NA Rattus norvegicus 81 Gcc2 ENSRNOG00000000823 ENSRNOT00000001092 2 1 1 80 20 27848360 27848469 TAACAGGAAAGAGGCCCAG 59 27848511 27848531 TTCATAGAAGCAGATAAGCGG 58 NA Rattus norvegicus 81 Gen1 ENSRNOG00000004667 ENSRNOT00000006470 3 1 1 80 6 36923224 36923244 TACTCTGTTCCACAATCAGCA 60 36921995 36923186 TTCATGATCCTTAGGAGAACCTG 60 NA Rattus norvegicus 81 LOC361985 ENSRNOG00000017758 ENSRNOT00000046919,ENSRNOT00000089801 1 2 2 80 2 189400871 189400889 GGCGTCAAGTAGTAACTGG 58 189400931 189401324 AACAGCAATACGAATACCAGG 59 NA Rattus norvegicus 81 Akr1c12l1 ENSRNOG00000050243 ENSRNOT00000064884 1 1 1 80 17 69588163 69588183 CTGTGTCAAACTAAACGATGG 58 69588225 69589556 TTACTCTTGGGAACCTCGT 58 NA Rattus norvegicus 81 Cdk16 ENSRNOG00000008578 ENSRNOT00000064309,ENSRNOT00000011592 1 2 2 80 X 1712251 1712273 CTTGTAGCACTTAAGGAGATCAG 59 1711606 1712211 CTTGAGCAGAGACACTTCC 58 NA Rattus norvegicus 81 Cldn11 ENSRNOG00000010263 ENSRNOT00000014359 1 1 1 83 2 115824798 115832774 TCCTTATTCTGCTGGCTCTC 59 115824734 115824752 AGCTCACGATGGTGATCTC 59 NA Rattus norvegicus 81 Ms4a7 ENSRNOG00000020953 ENSRNOT00000028443,ENSRNOT00000091506 3 2 2 80 1 227498800 227503796 AGTTCTTGGGACTATCCAGC 59 227498739 227498758 TTGGAGTAGGAAGCTGACAC 60 NA Rattus norvegicus 81 Pparg ENSRNOG00000008839 ENSRNOT00000082969,ENSRNOT00000051858,ENSRNOT00000012137 3 3 3 80 4 147361935 147372232 TCTCACAATGCCATCAGGT 59 147372273 147372294 GTCGATATCACTGGAGATCTCC 60 NA Rattus norvegicus 81 Plxna2 ENSRNOG00000007324 ENSRNOT00000009900 1 1 1 80 13 113403045 113466664 GGCAAGCTAAAGAAGATTCGAG 60 113466703 113466723 CCCATCTTTGAACACAGAGAC 59 NA Rattus norvegicus 81 LOC100912370 ENSRNOG00000049711 ENSRNOT00000071385 2 1 1 60 3 77825679 77825700 CGTGGTTACGTTTATGAATGCT 60 77825640 77825661 CCTGAAAGTGTAAACCATAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpina3m ENSRNOG00000009921 ENSRNOT00000013175 2 1 1 80 6 127811656 127813433 CTTTAGAGGCAAATGGAAGGT 58 127811596 127811615 ACAGACCTCTTCTCATCCAC 59 NA Rattus norvegicus 81 Vamp4 ENSRNOG00000003071 ENSRNOT00000076601,ENSRNOT00000004243 2 2 2 96 13 80465786 80465807 TGATTCAGATGAAGAAGAGGAC 58 80468767 80472967 CACCTGATTCTGAACATGCT 58 NA Rattus norvegicus 81 Rasgef1a ENSRNOG00000031671 ENSRNOT00000051804 2 1 1 80 4 150138744 150138764 TTTGGAAGCCTATGACAACTG 59 150138805 150139253 TGTTTCTTCTTTACCACCCG 58 NA Rattus norvegicus 81 Abcf1 ENSRNOG00000000799 ENSRNOT00000001049,ENSRNOT00000081403 3 2 3 81 20 3316005 3316188 AATCGCATCAATAAGGCCG 59 3316231 3316251 CTTTCCCTTTCGATTTCTCCT 58 NA Rattus norvegicus 81 LOC100909524 ENSRNOG00000048988 ENSRNOT00000075378 3 1 1 80 6 129008218 129009551 CTTGTTCAAAGGCAAGTGG 57 129008156 129008174 GCCTTGTATTTGTCCAGGT 58 NA Rattus norvegicus 81 AABR07068851.1 ENSRNOG00000059237 ENSRNOT00000089735 1 1 1 80 9 121946682 121951244 AATTCAACAAAGGCAGTTCC 57 121946621 121946639 AATGCTGCTTGAGTCTACC 58 NA Rattus norvegicus 81 Ldhd ENSRNOG00000019036 ENSRNOT00000044844,ENSRNOT00000079539 2 2 2 80 19 43839961 43840297 CCGCCATTATAGGAAGAGTG 58 43839900 43839918 GTAATGATGCCCAGAGTCC 58 NA Rattus norvegicus 81 Olr436 ENSRNOG00000032273 ENSRNOT00000040012 3 1 1 60 3 72739971 72739991 TTCTTCTGTGATGAACCTCCC 60 72739931 72739953 GGATACTGAAGTCAATACTGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dynlt3 ENSRNOG00000003611 ENSRNOT00000004808 1 1 1 88 X 14635107 14635452 TACAACATCTGATGGCACC 58 14635037 14635056 ATAGGACAATTGCTACTGCA 57 NA Rattus norvegicus 81 Zfp426 ENSRNOG00000033624 ENSRNOT00000038069,ENSRNOT00000077465 1 2 2 60 8 21479630 21480224 CAAACGCAGACAGGAAGTG 60 21479588 21479607 AGTCTCCATATTGTGTCCCG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100911127 ENSRNOG00000055735 ENSRNOT00000091636 2 1 1 60 15 36157399 36157419 ATTCACGTACTTACATCCCTC 57 36157359 36157380 CACAGATGACAATTTCACTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nmu ENSRNOG00000002164 ENSRNOT00000002941 1 1 1 80 14 34375577 34378287 CAAAGTGAATGAATACCAGGGTC 60 34379859 34379877 GTTGACCTCTTCCCATTGC 59 NA Rattus norvegicus 81 Actl10 ENSRNOG00000036864 ENSRNOT00000055335 1 1 1 60 3 150056237 150056255 ATCGTGCCCAGATCTTCAG 60 150056278 150056297 CTTCTTGAGCTGTGTAACGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040947.1 ENSRNOG00000011100 ENSRNOT00000014756 3 1 1 96 X 115425507 115425574 AGAGATGGCTAGTGTCGTG 59 115425429 115425447 CATGACTGACACCAAAGCC 59 NA Rattus norvegicus 81 Olr1598 ENSRNOG00000046866 ENSRNOT00000048222 1 1 1 60 13 92358409 92358427 ATCATGGGTTTGACTTGGG 58 92358447 92358469 CACTGAGGAAGAAATACATAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cited4 ENSRNOG00000046607 ENSRNOT00000072427 2 1 1 92 5 139598089 139598107 ATACGGCTCTTTCGGATCG 60 139598163 139598181 GTAGCTGCAGACTGAAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fubp3 ENSRNOG00000009139 ENSRNOT00000021871 1 1 1 80 3 10245510 10254007 CCTTGGACGATGGAGTAGG 59 10243168 10243188 CAGGCACCTTGAATTCTTCTG 60 NA Rattus norvegicus 81 Cdh3 ENSRNOG00000020129 ENSRNOT00000027273 1 1 1 80 19 38705880 38705899 TCTTAGATCGTGAGGACGAG 59 38705941 38706879 GAGGGTTTCCATTGTCTGTG 59 NA Rattus norvegicus 81 Erc1 ENSRNOG00000009264 ENSRNOT00000091473,ENSRNOT00000012397 1 2 2 80 4 152214465 152214486 GAGAAGGAGACACATCTAACCA 59 152149593 152214426 AGCTTCTTGTTTCATCTCCAG 58 NA Rattus norvegicus 81 Bdkrb2 ENSRNOG00000047300 ENSRNOT00000071735 1 1 2 81 6 129423254 129423272 CACTGTTCTTGGAAGCGAC 59 129423315 129425978 TGAACATTTCAATGCCCAGAG 59 NA Rattus norvegicus 81 Diras2 ENSRNOG00000032328 ENSRNOT00000044842 1 1 1 60 17 12763025 12763044 CCTTCATCCTGGTCTACTCC 59 12763067 12763085 TAGATGGGCTTGAGTTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC684683 ENSRNOG00000033994 ENSRNOT00000042537 2 1 1 60 3 73335985 73336003 CTTTGTGAGTCCACTGCTG 59 73336024 73336045 CTGCTTTACGTCTTTATTCCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhdc8a ENSRNOG00000000036 ENSRNOT00000000041 2 1 1 81 13 49075642 49078741 GTCACAGCCAAAGATTATCGAG 60 49078777 49078801 CATAGTGTTGTAAGTAGTTGTGAGG 60 NA Rattus norvegicus 81 Klhdc8a ENSRNOG00000000036 ENSRNOT00000000041 3 1 1 82 13 49075589 49075607 AGGGCAAGTGGAAGAAGAG 59 49075649 49078749 GGCATACACTCGATAATCTTTGG 60 NA Rattus norvegicus 81 LOC102552732 ENSRNOG00000023397 ENSRNOT00000031916 2 1 1 80 14 22869123 22870855 GAAGCTGTAGAGGGCTCTG 60 22869061 22869081 GGTTCTTTGAGGAAACTTGGG 60 NA Rattus norvegicus 81 Phf10 ENSRNOG00000061312 ENSRNOT00000085273 3 1 1 81 1 56961649 56962523 GCACACTAGGTTTAACAGCA 59 56961587 56961606 TATTCAGCGTGTTTAGCTGG 58 NA Rattus norvegicus 81 Ssc4d ENSRNOG00000001435 ENSRNOT00000001953 2 1 1 177 12 23755362 23756928 TGAATTCTTGCATACACAGCC 59 23757599 23757617 GTCATCGTCGCATACAGTG 59 NA DesignNoJunction Rattus norvegicus 81 Ssc4d ENSRNOG00000001435 ENSRNOT00000001953 3 1 1 178 12 23755363 23756928 GAATTCTTGCATACACAGCC 58 23757601 23757619 CAGTCATCGTCGCATACAG 59 NA DesignNoJunction Rattus norvegicus 81 Rbbp5 ENSRNOG00000021289 ENSRNOT00000036110 2 1 1 80 13 49267965 49268523 TTCTGTAGCAGTGATGAAGAG 58 49268564 49268583 TTCAGGGTCTTCTACCTCAG 58 NA Rattus norvegicus 81 Ccl26 ENSRNOG00000001444 ENSRNOT00000001963 2 1 1 80 12 24159092 24161618 ATGAGGGCGTCATATTCAC 57 24161661 24161680 AAATGTATCTCTGCACCCAC 58 NA Rattus norvegicus 81 Mir181b1 ENSRNOG00000035590 ENSRNOT00000053713 3 1 1 60 13 54952939 54952957 ACATTCATTGCTGTCGGTG 59 54952978 54952999 GTTGCATTCATTGTTCAGTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nampt ENSRNOG00000009754 ENSRNOT00000013043,ENSRNOT00000086432 2 2 2 80 6 52148403 52148421 TCGAGAAGTACAGAGGCAC 59 52148459 52149854 TATATCTAAGACCTTCAGGACAGTG 59 NA Rattus norvegicus 81 Tlr6 ENSRNOG00000002161 ENSRNOT00000002933 3 1 1 86 14 45039975 45039995 ACAACATTCCCAGTAGATACC 57 45040040 45042083 AGTTCTTTCCCTTCTCAATAGG 58 NA Rattus norvegicus 81 AC125991.2 ENSRNOG00000052402 ENSRNOT00000092205 2 1 1 60 3 78982803 78982825 CTCCTCAATCCTCTCATCTACTC 59 78982765 78982786 GATTCTTCATGGCTTTCTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf114 ENSRNOG00000060821 ENSRNOT00000086459 3 1 1 80 3 164256674 164256695 CTTTGATCAGGAAGGACTTGTG 59 164256735 164258195 GCACATATGGGACAAACCAC 60 NA Rattus norvegicus 81 AABR07015081.2 ENSRNOG00000054945 ENSRNOT00000087247 2 1 1 82 14 46657955 46657973 GGATCCCTACAACTCGGTG 60 46654990 46657909 GATTGTTCACCCACACCAC 59 NA Rattus norvegicus 81 Baz1b ENSRNOG00000001453 ENSRNOT00000001975 1 1 1 80 12 24524609 24524627 AGCTTGTAGATTCCGCCTG 60 24518543 24524568 TCTCCTTTCCTACCTCAAAGTC 59 NA Rattus norvegicus 81 Car13 ENSRNOG00000021323 ENSRNOT00000038546 1 1 1 80 2 88290574 88290592 GGTTCCACCTCTTCTTGAG 58 88284208 88290530 AATCTGGCCAACTGTTGAG 58 NA Rattus norvegicus 81 Slc35f1 ENSRNOG00000000412 ENSRNOT00000000468 1 1 1 80 20 34393721 34401196 GGATTGGCAAATAGGGCTG 59 34401237 34401258 TTTATGACGACTGGCATAAAGC 60 NA Rattus norvegicus 81 Nod1 ENSRNOG00000010629 ENSRNOT00000088085,ENSRNOT00000014324 2 2 2 80 4 85125048 85127604 ACAGAGATTTGCCTCAATGGA 60 85124988 85125008 GAAACAGATGATCCGCTTCTC 59 NA Rattus norvegicus 81 Cndp1 ENSRNOG00000027739 ENSRNOT00000034970 1 1 1 80 18 81467849 81468955 GAATGAGAAGATCAACAGGTGG 59 81467790 81467809 TGAAGCTTTGACAACTCCAG 59 NA Rattus norvegicus 81 Wbscr28 ENSRNOG00000001474 ENSRNOT00000033499 2 1 1 81 12 24807197 24807215 CTGGTACTGCTGCTAACCT 59 24807260 24807994 GCATAGAACTCTGGCTGTG 58 NA Rattus norvegicus 81 Pip4k2a ENSRNOG00000016670 ENSRNOT00000022375 3 1 1 93 17 85538651 85543760 AGGATGTCGAGTTCCTTGC 60 85538576 85538594 TCAACCTCCTCTTGCTCTG 59 NA Rattus norvegicus 81 Tmem175 ENSRNOG00000000044 ENSRNOT00000000050 1 1 1 80 14 2092041 2092061 ATGCCTTACTATCCATCATCG 58 2091025 2091830 TGTCAAACTGCTGTTCTGG 58 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078316 2 1 9 60 9 81545333 81545353 GTAACTGCTCTTTCAGTGGAC 59 81545374 81545393 GGTCAGAAGAAAGCATCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zcchc12 ENSRNOG00000013162 ENSRNOT00000017567 3 1 1 150 X 122809547 122809980 TCCTAGCTGGTACCCTACTG 60 122810093 122810111 TTACCCATGCGTGAAAGGA 59 NA InUTR Rattus norvegicus 81 Tbx2 ENSRNOG00000003517 ENSRNOT00000004698 2 1 1 127 10 73280362 73280380 AAACGCATGTACATCCACC 59 73280471 73284656 GAGTTCAGGATGGTGAAGC 58 NA Rattus norvegicus 81 LOC678816 ENSRNOG00000033808 ENSRNOT00000043108 1 1 1 60 18 69818817 69818835 TAAAGTTCAAGGTCCGCTG 58 69818857 69818877 TTCTCCTTGTCTGTGATAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC678816 ENSRNOG00000033808 ENSRNOT00000043108 3 1 1 60 18 69818816 69818835 GTAAAGTTCAAGGTCCGCTG 59 69818856 69818876 TCTCCTTGTCTGTGATAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmcc1 ENSRNOG00000011614 ENSRNOT00000056393 3 1 2 85 4 148048212 148048235 CAGCTCTTCTGTGATAGAAATAGC 60 148045490 148048170 TACATAGTGAGACCCGTTCTG 59 NA Rattus norvegicus 81 Psmd5 ENSRNOG00000018809 ENSRNOT00000025433 2 1 1 80 3 13928671 13928691 CTGAGTAATGCTGAACTCCTG 59 13928329 13928629 TTTGATAGCCGCTTTAGCC 58 NA Rattus norvegicus 81 Pik3c2b ENSRNOG00000029938 ENSRNOT00000042125,ENSRNOT00000090170 2 2 2 80 13 49901997 49902017 TCAAGTATGTGTATGATGCCC 58 49902058 49903413 TGGACTCAATCAACCTTGTG 58 NA Rattus norvegicus 81 C1qtnf7 ENSRNOG00000005094 ENSRNOT00000064495,ENSRNOT00000080604 3 2 2 98 14 72017926 72017944 AGGGATGGTAGAGATGGCA 60 72012500 72012518 TCCTTTCTCACCAGCAAGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100360645 ENSRNOG00000042271 ENSRNOT00000066885 3 1 1 80 10 48881063 48881081 GCAGATTCTCGTGAAGACC 58 48881125 48881144 GCCTCACTCACTTTCATGG 59 NA Rattus norvegicus 81 LOC500948 ENSRNOG00000031660 ENSRNOT00000041021 3 1 1 81 8 16347342 16347362 GGAGCCAGATATGGATGTCTC 60 16343532 16347304 GTGTATTAGGTACAGCAATCATCC 60 NA Rattus norvegicus 81 Dusp15 ENSRNOG00000008534 ENSRNOT00000011350,ENSRNOT00000072663 1 2 2 80 3 148426052 148427535 TGGAAACTTCATTGATGCCA 58 148425991 148426010 GGTGATTCGTGGATAGAGAC 58 NA Rattus norvegicus 81 Gstt1 ENSRNOG00000049771 ENSRNOT00000001669 2 1 1 80 20 13806055 13813875 TGGCATAAGGTGATGTTCC 58 13813919 13813937 ATCCAGATCTGCCAATGTG 58 NA Rattus norvegicus 81 Olr1230 ENSRNOG00000049352 ENSRNOT00000072547 2 1 1 60 4 1418103 1418122 GATTTCCTGCAGTAACACCT 58 1418144 1418163 AATAGTTCCAACCACAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rabepk ENSRNOG00000018591 ENSRNOT00000025194 3 1 1 95 3 13852339 13855909 AAGTCATGAATCCCGAAGC 58 13852262 13852281 CAATAGCTGCTGATGATGTG 57 NA Rattus norvegicus 81 Gpr119 ENSRNOG00000024517 ENSRNOT00000033619 2 1 1 80 X 135516850 135519497 AGAAGGTAGGAAGAAAGACGC 60 135516790 135516808 CACATGTGTACAGCGTCTG 59 NA Rattus norvegicus 81 Pabpn1l ENSRNOG00000029558 ENSRNOT00000045052 2 1 1 80 19 55434030 55434050 AATGAAGATTCCAGCTTCCTG 58 55433650 55433990 CTCTAGCTCCTGGTTGTAGAC 59 NA Rattus norvegicus 81 Sept1 ENSRNOG00000017804 ENSRNOT00000055012 1 1 1 80 1 198660219 198660775 GTCCTCAAGCAGAAGATCC 58 198660157 198660177 TTCATCAGAGTCACATTCTGG 58 NA Rattus norvegicus 81 Katnbl1 ENSRNOG00000005814 ENSRNOT00000007688 3 1 1 80 3 103902965 103902985 GAATGGATTATGGGAACAGGA 58 103903026 103905864 TAAGCATCTACGTCCTTAGC 57 NA Rattus norvegicus 81 Cngb1 ENSRNOG00000031773 ENSRNOT00000060351,ENSRNOT00000085440 1 2 3 80 19 10190008 10190845 CTACGTTTACAGGGTTATCAGG 58 10190886 10190904 GACGCCCAGTAGTAAAGAC 58 NA Rattus norvegicus 81 LOC364343 ENSRNOG00000049182 ENSRNOT00000072418 1 1 1 90 15 30802336 30802448 TTCTTCTGAGAGTTGCCCA 59 30802502 30802520 TTGCATTTCAGCTGCAGAG 59 NA Rattus norvegicus 81 AABR07052798.1 ENSRNOG00000046348 ENSRNOT00000071912 3 1 1 60 3 75769011 75769031 TGCATCTTTACCGATGTTGAG 59 75769052 75769071 CCTTGTACCGATCAAATGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msrb2 ENSRNOG00000016873 ENSRNOT00000022661 3 1 1 87 17 86078693 86146026 CCCACTCTTCAGTTCTGAG 57 86146077 86146095 TTCATCTGAGCCTTTGGTG 58 NA Rattus norvegicus 81 Gpr37 ENSRNOG00000002524 ENSRNOT00000003593 2 1 1 80 4 51842547 51842567 TCATCTTCCATGAGTTGACCA 59 51823500 51842508 GAGAAGCTACCTCGATATAGGG 59 NA Rattus norvegicus 81 Usp46 ENSRNOG00000002106 ENSRNOT00000002879,ENSRNOT00000083100 1 2 2 80 14 36750880 36751280 TGTGGAAGTGGTCCTAACC 59 36751321 36751342 GATGTCGTCATCAAACAATAGC 58 NA Rattus norvegicus 81 Rgcc ENSRNOG00000042960 ENSRNOT00000068216 1 1 1 80 15 61555256 61555276 ATGAGAAGCTGAATTCTCCGA 59 61553555 61555215 CACCTAATTTGGCTTTCCGA 59 NA Rattus norvegicus 81 Cldn8 ENSRNOG00000001571 ENSRNOT00000002138 1 1 1 60 11 28527380 28527398 CCCTCTACATAGGCTGGAC 59 28527338 28527356 CAACAGAACAGTGCTCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cldn8 ENSRNOG00000001571 ENSRNOT00000002138 2 1 1 60 11 28527728 28527748 GGAAGGTTTGTGGATGAACTG 60 28527688 28527709 ATAGACCTTACACTGCATTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zhx2 ENSRNOG00000005417 ENSRNOT00000007326 1 1 1 80 7 97632095 97693037 GCAGACACTGATATGAAGCC 59 97693077 97693098 TGTTTCAGAAGGATTTCAGCAC 60 NA InUTR Rattus norvegicus 81 Pim3 ENSRNOG00000029698 ENSRNOT00000085835,ENSRNOT00000043461 1 2 2 97 7 129860683 129862039 CACTGACTTTGATGGCACC 59 129862100 129862118 GTACACCCAGAGACCACAC 60 NA Rattus norvegicus 81 Rest ENSRNOG00000002074 ENSRNOT00000002844,ENSRNOT00000002837 2 2 2 80 14 33143412 33143431 TGTGAACTGTGTCCTTACTC 57 33137671 33143369 AAATGGCTTCTCACCTGAG 57 NA Rattus norvegicus 81 LOC688321 ENSRNOG00000045751 ENSRNOT00000071293 1 1 1 80 10 109952004 109952027 GTCTACAAAGGAGATCTTTGACAG 59 109952148 109952258 CCCTTGGCTACTATCTGGG 59 NA Rattus norvegicus 81 Myeov2 ENSRNOG00000037402 ENSRNOT00000056600 1 1 1 60 9 99816010 99818199 GTAGACTTGGATGAGGCTG 57 99815968 99815986 TTTCATTGGCTGCCAAGTC 59 NA DesignRelaxed Rattus norvegicus 81 Npap60 ENSRNOG00000024560 ENSRNOT00000039549 1 1 1 115 4 128264557 128264814 TAGTGCAGGACACTAAGTTAGAC 60 128264464 128264482 TGGTGGATTGGGTACACAG 59 NA Rattus norvegicus 81 Ranbp6 ENSRNOG00000053859 ENSRNOT00000078998 2 1 1 60 1 247985330 247985351 GACTACATTCCTCTTAGATGCC 58 247985291 247985313 CATTTGTCTCACCTCATAACCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ormdl3 ENSRNOG00000030445 ENSRNOT00000049621 1 1 1 80 10 86547467 86547790 CCCATTGTGCTGTACTTCC 59 86547405 86547425 CATCAAGGACACAGTGTTGAG 59 NA Rattus norvegicus 81 Tpd52l3 ENSRNOG00000042441 ENSRNOT00000066891 2 1 1 60 1 248195966 248195984 CAGATGCCATGACAGAGAC 58 248196007 248196026 TCTGGTTCTGAAGCTAGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Drg1 ENSRNOG00000018590 ENSRNOT00000025241 2 1 1 87 14 83468924 83468942 TCGTTTGAACAGCAAACCC 59 83464681 83468874 TTCACTCTGAGGACAAGTGG 59 NA Rattus norvegicus 81 Steap1 ENSRNOG00000000017 ENSRNOT00000000018 3 1 1 82 4 25443072 25446056 CTATATTCAGAGCAAACTGGGA 58 25446098 25446117 CTACCCATTTATTCCAGGCA 57 NA Rattus norvegicus 81 Olr1581 ENSRNOG00000046418 ENSRNOT00000045565 1 1 1 60 13 91693451 91693471 TCTTCTCTGCCCTATACATCC 59 91693411 91693433 CGGATAATGGTCACAATGATGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tsnaxip1 ENSRNOG00000018954 ENSRNOT00000025686 2 1 1 80 19 37810946 37811090 ATGGGAAAGACTTTGGAGAG 57 37811132 37811151 GTCAGCATTTATCAGCTCCT 58 NA Rattus norvegicus 81 Mtmr1 ENSRNOG00000002697 ENSRNOT00000078032,ENSRNOT00000003638 3 2 2 80 18 312820 312839 GATGGAAATAAACTGGCGCA 59 309773 312778 GATGACGTCCTTCACAATGG 59 NA Rattus norvegicus 81 Olr47 ENSRNOG00000018501 ENSRNOT00000024948 3 1 1 60 1 167769724 167769743 CTACATTGGACCTCTTCCAC 58 167769683 167769701 GATGTGGGTCCGATAAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uqcc1 ENSRNOG00000048309 ENSRNOT00000072679 3 1 1 80 3 151454848 151456024 CACAAGTAAGCTGTCCACTG 59 151454787 151454808 GCTTCGATTATCTTCGTGAAGG 60 NA Rattus norvegicus 81 Zfp94 ENSRNOG00000019416 ENSRNOT00000088431,ENSRNOT00000026252 1 2 4 82 1 81124237 81124916 AAGGTTCAGGAATGAACAACC 59 81124175 81124193 GATTTGCCAGCAGGAAAGG 60 NA Rattus norvegicus 81 Hs3st2 ENSRNOG00000017659 ENSRNOT00000023773 2 1 1 103 1 191345808 191345826 TGGAGTTTATCCGAGTGCA 59 191345893 191472796 CATCAGGCTCCTGTACCAG 60 NA Rattus norvegicus 81 Ankrd29 ENSRNOG00000046744 ENSRNOT00000073811 3 1 1 60 18 3676135 3676156 GAATGAACATATACTGCACCTC 57 3676096 3676114 TCCGAGTTCATTCTTCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Thbs2 ENSRNOG00000010529 ENSRNOT00000014552 2 1 1 80 1 56658701 56658719 AAACATTGGCTGGAAGGAC 58 56657230 56658660 ACTAAGACTCTCATGTAGCCTG 59 NA Rattus norvegicus 81 Vkorc1l1 ENSRNOG00000018291 ENSRNOT00000024691 2 1 1 90 8 16329667 16333387 TATTACTTGGCATGACAGCC 58 16333440 16333458 TAGGCCAGGTACAAAGACC 59 NA Rattus norvegicus 81 Slain2 ENSRNOG00000002271 ENSRNOT00000003087 3 1 1 80 14 37828743 37828761 TCCATCCTCAACACCAGTG 59 37822826 37828702 GATGAGCTCTTGAAGTTACCTG 59 NA Rattus norvegicus 81 Mrc1 ENSRNOG00000018251 ENSRNOT00000024736 3 1 1 80 17 81378618 81378639 GTTTAAGTTTAAGCACTGGCTG 59 81378679 81383160 ATGATGGACTTCCTGGTAGC 59 NA Rattus norvegicus 81 Cops7a ENSRNOG00000016778 ENSRNOT00000022874,ENSRNOT00000038281 3 2 2 80 4 157483386 157483588 TGACTACTTAGCTGAAGCCAG 60 157483326 157483345 GTGACAACTGACAGATGTCG 59 NA Rattus norvegicus 81 Vom2r26 ENSRNOG00000009146 ENSRNOT00000003660,ENSRNOT00000046049 2 2 2 81 1 63558873 63558892 GAGTTGAATCTGCAACAGGT 59 63557447 63558832 AGGAGTTTAACTTCAAGCAGTG 59 NA Rattus norvegicus 81 Otx1 ENSRNOG00000059469 ENSRNOT00000090664 2 1 1 81 14 106863805 106863824 CTACCCAGACATCTTCATGC 58 106862393 106863762 GTTCTTGAACCAAACCTGGA 58 NA Rattus norvegicus 81 Terf2 ENSRNOG00000020435 ENSRNOT00000027695 3 1 1 81 19 39281130 39281149 CCTTATCAGCATCACCATCC 58 39276958 39281087 TTGTCTTTCGATGCTTTGGG 59 NA Rattus norvegicus 81 Laptm5 ENSRNOG00000011054 ENSRNOT00000015198,ENSRNOT00000083028 3 2 2 89 5 149063490 149063508 TTTGAGCATCCTGACCCTG 60 149063560 149065108 CTCGGCAGGTAATTCATGTG 59 NA Rattus norvegicus 81 Clcnka ENSRNOG00000052368 ENSRNOT00000089184 2 1 1 80 5 159940342 159941773 CTTCAACAGTGAACAGGAGAC 59 159940282 159940300 ATTTCAGGCAGGTCAAAGG 58 NA Rattus norvegicus 81 Olr149 ENSRNOG00000017138 ENSRNOT00000023002 3 1 1 60 1 169371667 169371685 ATTCCACCAGCAATGAACC 58 169371625 169371645 CCTTATCTCTGATCTGCTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdh15 ENSRNOG00000027954 ENSRNOT00000033352 3 1 1 80 19 55683487 55683895 CACCAAGGATGAGTTCTTTATGG 60 55683933 55683953 TCCTTGTCTTCTACCTCAAGC 60 NA Rattus norvegicus 81 Foxp4 ENSRNOG00000022804 ENSRNOT00000064229,ENSRNOT00000087107 2 2 2 80 9 15114042 15114063 TCTTTATGGACATGGAGAATGC 59 15114101 15114789 TTGAGGTGTTTGATAAACTGGC 60 NA Rattus norvegicus 81 Clhc1 ENSRNOG00000004456 ENSRNOT00000006085 1 1 1 80 14 113996704 114005081 CCAAGGACATTAACACTGATGAC 60 114005115 114005139 CTTCAGTAAGACCTCTGATTAAGTC 59 NA Rattus norvegicus 81 Clhc1 ENSRNOG00000004456 ENSRNOT00000006085 2 1 1 80 14 113994196 113994215 TTGGAGGGAATCAAATGTGG 58 113994258 113996528 AAATGTCAGCTTTGCCTGG 59 NA Rattus norvegicus 81 Ndufa4 ENSRNOG00000005512 ENSRNOT00000007567 1 1 1 90 4 38239631 38240699 AAACATCCCAGCTTGATCC 58 38239559 38239577 GATTGAACAATGCCAAGCG 58 NA Rattus norvegicus 81 Marveld3 ENSRNOG00000016291 ENSRNOT00000021866,ENSRNOT00000079730 1 2 2 81 19 41710582 41712638 GTTGGAGAGTGAACTGGCT 60 41712678 41712701 TGACTGGTAATATTCCTCTTCCTG 60 NA Rattus norvegicus 81 Marveld3 ENSRNOG00000016291 ENSRNOT00000021866,ENSRNOT00000079730 3 2 2 83 19 41710582 41712638 GTTGGAGAGTGAACTGGCT 60 41712680 41712703 TCTGACTGGTAATATTCCTCTTCC 60 NA Rattus norvegicus 81 Uqcr10 ENSRNOG00000009521 ENSRNOT00000012614 1 1 1 60 15 86123327 86123346 TATGATCACAGCAAGGAGGG 59 86123286 86123304 CCTGGTTCTCGTACTTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnase12 ENSRNOG00000042612 ENSRNOT00000064936 3 1 1 60 15 27981592 27981612 CTAACTGAAGATGTTGTGCTG 57 27981552 27981570 CACTCTGAGGGTAGTCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pnpla5 ENSRNOG00000022296 ENSRNOT00000039228 2 1 1 81 7 124996219 124996239 AGTTTCCAGATCTCTACCAGG 59 124994739 124996176 AATAGTCAGCCACCACCTC 59 NA Rattus norvegicus 81 Slc7a12 ENSRNOG00000033830 ENSRNOT00000051741 2 1 1 80 2 88560193 88591531 CTACCAAGACCTTATAAGGTGC 58 88560134 88560152 CACTGGTGTGAGAATGAGG 58 NA Rattus norvegicus 81 Vom1r24 ENSRNOG00000048370 ENSRNOT00000043828 2 1 1 60 1 68670721 68670741 TCCAGTACATCCATGATTGTC 58 68670762 68670781 TGTGAATGTGTTGAACCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nuak2 ENSRNOG00000000034 ENSRNOT00000000039 3 1 1 81 13 49101083 49103858 TCCATGAAGTGTTTGAGAACAG 59 49103897 49103918 CTGATGTAATCGTACAGATCGC 59 NA Rattus norvegicus 81 Rpgr ENSRNOG00000003013 ENSRNOT00000067603 2 1 1 80 X 14314850 14317252 AGCTTTGATGACAGATATAGGC 58 14314791 14314810 AAATTCTCCATTCCAAGCCC 59 NA Rattus norvegicus 81 Kmt2c ENSRNOG00000007997 ENSRNOT00000010349 2 1 1 80 4 6289874 6289894 TCATCGAGTACATTGGAACGA 59 6289936 6290192 CACCTCGGTTCTGAGACTC 60 NA Rattus norvegicus 81 Apeh ENSRNOG00000029572 ENSRNOT00000045410 3 1 1 80 8 116865485 116865506 CTGCTTACAATTGACAAAGACC 58 116865068 116865444 CAGGAACCCAACTTTCAGG 58 NA Rattus norvegicus 81 Pot1 ENSRNOG00000019986 ENSRNOT00000060459,ENSRNOT00000079130,ENSRNOT00000080575 3 3 3 80 4 51914436 51917439 TTCCATAGGCTGAAGATCCA 58 51914375 51914394 TTCAAATGTCAAAGACGCGA 59 NA Rattus norvegicus 81 Fbln1 ENSRNOG00000014137 ENSRNOT00000047234,ENSRNOT00000088042 1 2 2 80 7 126127691 126127710 ATGTCAGAAGAATGTGCCCA 60 126127753 126128428 CACTCATCCACGTCAACAC 59 NA Rattus norvegicus 81 Gin1 ENSRNOG00000011962 ENSRNOT00000016028,ENSRNOT00000077052,ENSRNOT00000087355 3 3 4 106 9 111208730 111208751 TTTCCTATATGGACCTCCTCAG 59 111207018 111207037 TTACAATCTCCTTTGCACCA 58 NA DesignNoJunction Rattus norvegicus 81 Ppp3ca ENSRNOG00000009882 ENSRNOT00000047975 2 1 1 81 2 242181014 242184113 GCTGATGAAGCCATCAAAGG 60 242184156 242184175 CGTTAATTCGGTCTAAGCCC 59 NA Rattus norvegicus 81 Sstr4 ENSRNOG00000004641 ENSRNOT00000006181 1 1 1 60 3 142740669 142740688 GAATCTGTTTGTCACCAGCC 60 142740711 142740729 ATAGCTGAGGATGAGGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051533.2 ENSRNOG00000043155 ENSRNOT00000048523 2 1 1 60 3 16537365 16537384 TCATATTCCTGCTGCTCTGG 60 16537148 16537166 GGAGACTGGGTCATCACAG 60 NA DesignNoJunction Rattus norvegicus 81 Mdm4 ENSRNOG00000009696 ENSRNOT00000012984 3 1 1 80 13 49805908 49805932 GAACTGAAGAAGATGATACTCACAC 60 49803824 49805874 CTATCAAGTCTTCATCTGCTCTG 59 NA Rattus norvegicus 81 Slc5a12 ENSRNOG00000028008 ENSRNOT00000046937 1 1 1 80 3 101802336 101806830 CACATTCTATTGTAGTTTGGGAGG 60 101806867 101806887 AAACCCACAATCATGACAACC 60 NA Rattus norvegicus 81 Fam19a5 ENSRNOG00000049349 ENSRNOT00000074625 2 1 1 135 7 128648582 128648600 GATTGTGACCCTAGACCGG 60 128648698 128690777 GATAATTCGAGCGTCCACAC 59 NA Rattus norvegicus 81 Dmrt2 ENSRNOG00000016301 ENSRNOT00000067372 3 1 1 189 1 243664363 243665790 CCACAGAGGACAAGAAGGG 60 243668044 243668063 CTCATCCTGTCACTGACAGG 60 NA Rattus norvegicus 81 Hrh4 ENSRNOG00000016887 ENSRNOT00000022744 2 1 1 81 18 4365648 4374687 TCTTCGTGGGTGTCATCTC 59 4374731 4374750 AACATGCAGATTCCACTTCC 59 NA Rattus norvegicus 81 Rhox11 ENSRNOG00000028044 ENSRNOT00000035449 1 1 1 62 X 124232901 124236293 GTGGATGAACAGAAAGTAAAGG 57 124236310 124236334 CTGAATCTTCCTAAGTTTAGCTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Awat1 ENSRNOG00000026231 ENSRNOT00000076053 2 1 1 82 X 70409810 70410447 CCATTACAATCCTGAAGACTAAGG 59 70410488 70410506 GAAGGTCAGGAGACCATGG 60 NA Rattus norvegicus 81 Apopt1 ENSRNOG00000011542 ENSRNOT00000015373 3 1 1 85 6 136207958 136210612 TGTGCTATAACCGAGACTGG 59 136210660 136210678 CTTGCTCCACATCCTCTCC 60 NA Rattus norvegicus 81 Efhc2 ENSRNOG00000002986 ENSRNOT00000037360 3 1 1 80 X 5994223 5994241 AGGATGTGCAAGTCTTCCA 59 5994282 6006517 TTGGTCTTTGTCTTCAAACCTG 59 NA Rattus norvegicus 81 Herc2 ENSRNOG00000013718 ENSRNOT00000090796,ENSRNOT00000019245 2 2 2 80 1 114531378 114531483 AATGCTCGCTCATTAAGACTC 59 114531523 114531543 ATCTCAAGCGTTCAATGACAG 59 NA Rattus norvegicus 81 LOC498231 ENSRNOG00000029418 ENSRNOT00000051824 1 1 1 80 13 50250733 50250752 AGAGACCAAGCAAGATTCCA 59 50247864 50250690 GGCCTAAGTCTGAAAGCCT 59 NA Rattus norvegicus 81 LOC498231 ENSRNOG00000029418 ENSRNOT00000051824 3 1 1 80 13 50250724 50250744 AGCAAGATTCCATTGTCAAGG 59 50247856 50250683 AAGAACTGGGCCTAAGTCTG 60 NA Rattus norvegicus 81 LOC691551 ENSRNOG00000028473 ENSRNOT00000039447 3 1 1 82 1 190927271 190929670 GTTTACCTCACTGTTATCATGGTG 60 190929711 190929729 TCTGCATCGACCATGTCAG 60 NA Rattus norvegicus 81 Hist1h1t ENSRNOG00000061863 ENSRNOT00000081345 3 1 1 60 17 43675526 43675545 CAAGCTTAGCAAGAAGGCAG 60 43675485 43675503 AGAAGCAGATTTCTTGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Senp17 ENSRNOG00000030159 ENSRNOT00000043708 2 1 1 90 4 161090341 161090359 GCAAACATCCTGGACAGTG 59 160865751 160865769 TTTCTTGCTCTGGGAGAGC 60 NA DesignNoJunction Rattus norvegicus 81 Senp17 ENSRNOG00000030159 ENSRNOT00000043708 3 1 1 92 4 161090343 161090361 ATGCAAACATCCTGGACAG 58 160865751 160865769 TTTCTTGCTCTGGGAGAGC 60 NA DesignNoJunction Rattus norvegicus 81 LOC654482 ENSRNOG00000043410 ENSRNOT00000068290 3 1 1 81 8 6223079 6223100 CTTTGTCAGTATGAAGATGTGC 58 6220630 6223037 GTTTCCGAACACTCACCAG 59 NA Rattus norvegicus 81 Mtfmt ENSRNOG00000014602 ENSRNOT00000019671 3 1 1 80 8 70981046 70981064 CTCTGGATGGAGAACACCG 60 70981107 70982409 TCCCATCACTTTCGGATCTG 60 NA Rattus norvegicus 81 Crygn ENSRNOG00000009226 ENSRNOT00000012285 2 1 1 86 4 6903267 6905955 TGTAGGCATGCATGGAGAG 60 6906005 6906023 CAATCCTCCACGAACTCCA 59 NA Rattus norvegicus 81 Olr1652 ENSRNOG00000018492 ENSRNOT00000024940 3 1 1 60 17 2704728 2704748 AACCCTCTCCTATACTCTGTG 58 2704688 2704707 ACCCTGATACTAGCAGTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 P2rx6 ENSRNOG00000001873 ENSRNOT00000002558 1 1 1 80 11 87441223 87441322 AGTTCAACTTCTCCAGAACCA 59 87441362 87441382 TGGAGAGTGAATCGTAGAGAC 59 NA Rattus norvegicus 81 Faxc ENSRNOG00000010106 ENSRNOT00000013599 1 1 1 80 5 36127102 36127121 CACTGTCTTTGGACACTTGG 59 36127162 36135337 ATCAGCTCACCTTTGATTAGC 59 NA Rattus norvegicus 81 Scg5 ENSRNOG00000007542 ENSRNOT00000010679 3 1 1 81 3 105250428 105250448 CTAAGGACTTCAGTGAGGACC 60 105247247 105250385 AGACATCCGTCATCTGCAG 60 NA Rattus norvegicus 81 Bcl2l11 ENSRNOG00000016551 ENSRNOT00000051069,ENSRNOT00000022596 3 2 2 80 3 120729876 120729896 TGAGTTGTGACAAGTCAACAC 59 120729937 120749188 TTATGGAAGCCATTGCACTG 59 NA Rattus norvegicus 81 Ythdf2 ENSRNOG00000010892 ENSRNOT00000014479 3 1 1 165 5 150389973 150389991 TTACCAGTGAGGATCCGAG 58 150383804 150388801 TATGCATTATTCGGCCTTGC 59 NA InUTR Rattus norvegicus 81 RGD1563680 ENSRNOG00000004571 ENSRNOT00000006177 3 1 1 80 3 107202928 107202946 GCACCCTCATTAATGGCTC 59 107202988 107229502 TATAACAGACTTGGAGGGTGG 59 NA Rattus norvegicus 81 LOC499136 ENSRNOG00000014455 ENSRNOT00000019364 3 1 1 159 1 97785146 97785165 ACACAATGGAGTACTACGCA 59 97784023 97784041 ACACGTAGCTTAGGAGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Gpr37l1 ENSRNOG00000006237 ENSRNOT00000008282 3 1 1 110 13 51987296 51991884 CTTCATGGAGGTCTCCTCC 59 51987204 51987222 CTCTCAATGGGTCTCACCT 58 NA Rattus norvegicus 81 Klb ENSRNOG00000002834 ENSRNOT00000003811 3 1 1 78 14 44548543 44613096 GACACAACCTGATCAAGGC 59 44548483 44548501 AGCCAACCCTTCTGATGAG 59 NA DesignNoJunction Rattus norvegicus 81 Nhlrc1 ENSRNOG00000026286 ENSRNOT00000031656 1 1 1 60 17 18060373 18060393 TGATTGTTGCTGATACCTCTG 58 18060414 18060433 GGAAATTCCTCAGGTTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msmp ENSRNOG00000043023 ENSRNOT00000068105 1 1 1 85 5 59085329 59085562 TACTTCCAAGCTCAAGCTCC 60 59085263 59085281 CAATGGAAGCAGTCCTTGC 60 NA Rattus norvegicus 81 P4htm ENSRNOG00000020249 ENSRNOT00000027466 2 1 1 80 8 117370779 117382048 CCATTGCTCTTCGAAATCCC 59 117370718 117370737 TAACCCTTTCATCTGTGCCA 59 NA Rattus norvegicus 81 Cct5 ENSRNOG00000011632 ENSRNOT00000015886 1 1 1 80 2 84671449 84671471 GAGGACACCAAACTTATAAAGGG 59 84671312 84671411 AGCATTCAACACTTCTTTCGG 60 NA Rattus norvegicus 81 Col23a1 ENSRNOG00000046785 ENSRNOT00000004510 1 1 1 87 10 34921629 34923242 TTAGATGCCCTGAAGGGTC 59 34923978 34923996 CAGGCAATCCAAGTTCACC 59 NA Rattus norvegicus 81 AABR07068221.2 ENSRNOG00000049962 ENSRNOT00000064642 2 1 1 80 9 91048947 91049969 AACTTCCTCTCAGCTGTTCC 60 91048886 91048908 TCTTCTACTATGACTTCCAGCTC 59 NA Rattus norvegicus 81 Olr1597 ENSRNOG00000003555 ENSRNOT00000004719 3 1 1 60 13 92342951 92342969 AATCATCCCACGAATGCTC 58 92342909 92342929 ACCCATAAAGGAAATCACCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1600 ENSRNOG00000047062 ENSRNOT00000050469 3 1 1 60 13 92376952 92376972 TAGGCTTCTCTGTTTACCCAC 60 92376994 92377012 TACAGGCAAAGGAAGACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr686 ENSRNOG00000045702 ENSRNOT00000042640 3 1 1 60 3 78010047 78010065 CTAAAGCTTGCCTGCACTG 60 78010089 78010107 ACCCACTATTGGCAAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnmb2 ENSRNOG00000010094 ENSRNOT00000083676 2 1 4 74 2 118547192 118547211 GTTTATATGGACCAGTGGCC 59 118547245 118584893 ACACTTAGGAATATAGGAGCAC 57 NA DesignNoJunction Rattus norvegicus 81 Olr1630 ENSRNOG00000012515 ENSRNOT00000016683 2 1 1 60 15 26939387 26939406 GTGGACCCAATGAAGTAGAC 58 26939346 26939364 CAGGCAAGTTTGACCACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Alg13 ENSRNOG00000005753 ENSRNOT00000076680,ENSRNOT00000077034,ENSRNOT00000076521 2 3 4 85 X 115561441 115563049 TACGGTTCAGATACTCAAGAGTC 60 115563094 115563112 TACTGAATGGCTCAGGCAC 60 NA Rattus norvegicus 81 Alg13 ENSRNOG00000005753 ENSRNOT00000076680,ENSRNOT00000077034,ENSRNOT00000076521 3 3 4 85 X 115561442 115563049 ACGGTTCAGATACTCAAGAGTC 60 115563095 115563113 GTACTGAATGGCTCAGGCA 60 NA Rattus norvegicus 81 Hdhd2 ENSRNOG00000043171 ENSRNOT00000051857,ENSRNOT00000080784,ENSRNOT00000080660 1 3 3 80 18 73272160 73272181 CATTCTTTCTGGAAGCATTGAG 58 73272220 73274062 CATCATCCCTGCAATCATCTC 59 NA Rattus norvegicus 81 Hdhd2 ENSRNOG00000043171 ENSRNOT00000051857,ENSRNOT00000080784,ENSRNOT00000080660 2 3 3 80 18 73272157 73272176 AGACATTCTTTCTGGAAGCA 57 73272219 73274059 CATCCCTGCAATCATCTCC 58 NA Rattus norvegicus 81 Eaf1 ENSRNOG00000019559 ENSRNOT00000026525 1 1 1 80 16 7589208 7591330 CATTCGCTATGACTTTAAGCCA 59 7591370 7591389 GTGACTTCATCTCCTTTGCC 59 NA Rattus norvegicus 81 Snrpd1 ENSRNOG00000013714 ENSRNOT00000018646 2 1 1 81 18 1868733 1868754 ATTGAGTCATGAAACCGTAACC 59 1868795 1872133 CATGCTGACATCTACACCTG 59 NA Rattus norvegicus 81 Slc26a6 ENSRNOG00000020450 ENSRNOT00000027762 2 1 1 81 8 117654153 117654252 AGTGGACCTGCTAATCTGG 59 117654297 117654315 GACTATGGAGACTGCCAGG 59 NA Rattus norvegicus 81 Drd1 ENSRNOG00000023688 ENSRNOT00000030893 1 1 1 60 17 11101907 11101925 CGAGGATGACAACTGTGAC 58 11101948 11101967 GATGAGGGACGATGAAATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hif1a ENSRNOG00000008292 ENSRNOT00000049725,ENSRNOT00000077935 1 2 2 80 6 96836038 96836057 ATGGTGCTAACAGATGATGG 58 96836098 96836200 TAGTTCAAACTGAGTCAACCC 58 NA Rattus norvegicus 81 Sap30bp ENSRNOG00000005482 ENSRNOT00000007362 3 1 1 80 10 104512945 104512963 CAAGAAAGGCACCACAACC 60 104513007 104513285 TTCCTCTTCTGGGCATCTG 59 NA Rattus norvegicus 81 Ppa2 ENSRNOG00000012091 ENSRNOT00000016195 2 1 2 80 2 238566924 238577276 AGGCTCCAAGGTTCTTTCC 60 238577316 238577338 GTTTCACTCTGATCGATAAGTGC 60 NA Rattus norvegicus 81 Wdsub1 ENSRNOG00000005990 ENSRNOT00000008168 1 1 1 80 3 45930685 45930704 ATCCCTGACGAGTTCATCTG 59 45925547 45930643 CTCGTAGGAGTAGCCATCTG 59 NA Rattus norvegicus 81 Ubxn10 ENSRNOG00000027731 ENSRNOT00000000167 3 1 1 60 5 157160782 157160801 AGACGTTTCTCTGACCTCAC 60 157160741 157160763 GTACAGATTTATGAAGGATGCCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aup1 ENSRNOG00000007842 ENSRNOT00000010602 2 1 1 86 4 113889742 113889760 ATTTGCCAAGTCTTCCTGG 58 113889809 113889930 TCTCTGAATCTCCTTCTTGC 57 NA Rattus norvegicus 81 Haus1 ENSRNOG00000017067 ENSRNOT00000023101 1 1 1 80 18 74145246 74145265 CTCCAGAACATGGACTTCCT 59 74144837 74145204 GGATGAAAGTTGCTCCTCTG 59 NA Rattus norvegicus 81 Fndc8 ENSRNOG00000008264 ENSRNOT00000010924 2 1 1 80 10 70248888 70248908 ACGAGTTACTGTCTCACTGTC 60 70248948 70249480 CACGGTTGCAAACTTATAGGG 60 NA Rattus norvegicus 81 Pfn4 ENSRNOG00000050386 ENSRNOT00000074570 3 1 1 80 6 30031724 30031742 GTATCTTCTGGTGGCAACC 58 30028517 30031681 AGATACTCTCCCAGCTTCTC 58 NA Rattus norvegicus 81 Rpl35 ENSRNOG00000014272 ENSRNOT00000019162 1 1 1 80 3 23297405 23297423 TCTGAAGGTGGAACTGTCC 59 23296870 23297362 ACGACTCGTATCTTGGAGAG 59 NA Rattus norvegicus 81 Mknk2 ENSRNOG00000029028 ENSRNOT00000041106 1 1 1 80 7 11912666 11912767 GCAGATTTGAAGATGTCTACCA 59 11912808 11912826 GATTGACACAGGTCTGCAC 59 NA Rattus norvegicus 81 LOC100911064 ENSRNOG00000060632 ENSRNOT00000078704 1 1 1 60 15 36213271 36213289 TGTTGCCATCTGTAACCCA 59 36213229 36213250 AGAAGTGTAAATCTGAGAGGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 P2ry4 ENSRNOG00000002953 ENSRNOT00000045907 3 1 1 61 X 70428078 70428334 CTGGACTAAGGAAGCTAGGG 59 70428036 70428057 CCTAGTGATGTGAATAGCAAGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Dsc2 ENSRNOG00000039969 ENSRNOT00000061417,ENSRNOT00000082891 3 2 2 80 18 11846782 11847859 TTCAACAGATCCAATCCGAC 58 11846721 11846741 CGGGTTCTTTATCAACTCCTG 59 NA Rattus norvegicus 81 Hells ENSRNOG00000047692 ENSRNOT00000075680,ENSRNOT00000083183 2 2 2 80 1 257636715 257636733 TTGTTTGTGGCCCTTTGTC 59 257636774 257637944 ACAGCAAAGTAGGAATTTCTGG 59 NA Rattus norvegicus 81 Nav1 ENSRNOG00000008425 ENSRNOT00000064758,ENSRNOT00000037100,ENSRNOT00000011801 2 3 3 80 13 52363976 52412930 TCAGCCAAATGCTAGATCC 57 52363914 52363932 TTTCTTCCAGGTTCTGTCG 57 NA Rattus norvegicus 81 Itih1 ENSRNOG00000033386 ENSRNOT00000051751 2 1 1 80 16 7025087 7025517 TCAGTGACTTTGCCATAACAG 59 7025027 7025046 GGTATTGCTTCCATGCAGTC 59 NA Rattus norvegicus 81 LOC687088 ENSRNOG00000059135 ENSRNOT00000072772 2 1 1 60 1 230217220 230217241 GAATAGGACAGAAGTGACAGAG 58 230217261 230217280 CTGTAGGTGTGGGTCATCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnq2 ENSRNOG00000011624 ENSRNOT00000049961 2 1 1 80 3 176597982 176598675 CTCAGAAGAAGCAAGCCTC 58 176597920 176597940 AGATCTTCAGTCACAAACTCG 58 NA Rattus norvegicus 81 Smc1b ENSRNOG00000032570 ENSRNOT00000044883 1 1 1 80 7 126004492 126007959 AAGACGAAAGGCAGTAGCA 59 126004430 126004450 TGCTTTAAGTCACTTGACCCT 60 NA Rattus norvegicus 81 Dctpp1 ENSRNOG00000017850 ENSRNOT00000024074 2 1 1 86 1 198703827 198705709 GAACTCTTTCAGTGGAAGTCTG 59 198703762 198703780 ACTAAGCTCCTCCTGAAGG 58 NA Rattus norvegicus 81 Mir3556b ENSRNOG00000035509 ENSRNOT00000053632 2 1 1 62 13 113782640 113782661 CATAACCGATTTCAAATGGTGC 59 113782599 113782617 CTGACCGATTTCTCCTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ip6k2 ENSRNOG00000020361 ENSRNOT00000077078,ENSRNOT00000027584 3 2 2 81 8 117592546 117592564 CCTTGGAGCATGAAGTGTC 59 117592606 117598489 AGATGAATTTGTACTGGTTCCG 59 NA Rattus norvegicus 81 Zfp566 ENSRNOG00000048138 ENSRNOT00000074582 1 1 1 80 1 88416579 88420429 GCTTTCAATGGTCCTGGAG 59 88416517 88416535 TGCGCCATTTCTATCTCAC 58 NA Rattus norvegicus 81 Gab2 ENSRNOG00000011882 ENSRNOT00000016361 3 1 1 80 1 162276793 162276812 AGAAACAACACTGTCATCGA 58 162276853 162277443 GTTAAAGGTGTGGTTGATCCT 58 NA Rattus norvegicus 81 En2 ENSRNOG00000006846 ENSRNOT00000008951 1 1 1 80 4 439338 439356 CTGCACACGTTACTCTGAC 59 442528 442546 TTGTCCTCTTTGTTCGGGT 59 NA DesignNoJunction Rattus norvegicus 81 Rock2 ENSRNOG00000004496 ENSRNOT00000090816,ENSRNOT00000006403 1 2 2 80 6 42274335 42274444 AGATACCCAAGAACAACTGTC 58 42274486 42274504 AGCTGCTTCTCAAACTGTG 58 NA Rattus norvegicus 81 Rock2 ENSRNOG00000004496 ENSRNOT00000090816,ENSRNOT00000006403 2 2 2 80 6 42274519 42275871 CACTCAAGACTCAAGCTGTG 59 42275914 42275932 CATCTGTGTCACTACCACG 58 NA Rattus norvegicus 81 Ppp1r13b ENSRNOG00000012653 ENSRNOT00000082600,ENSRNOT00000067118 2 2 2 80 6 136414889 136415970 ATGAATGGCAATCTGTCTGC 59 136414828 136414846 GATGGCAGTCTGAACTTCC 58 NA Rattus norvegicus 81 Mki67 ENSRNOG00000028137 ENSRNOT00000038176 2 1 1 80 1 208008093 208008198 CCAGTACTCCAAAGAAACCT 57 208008032 208008051 TTACAATGGTACAGGGTGAG 57 NA Rattus norvegicus 81 Pax5 ENSRNOG00000024729 ENSRNOT00000033373 3 1 1 81 5 60171671 60171689 GTGTCAGCTCCATCAACAG 59 60158857 60159422 TTGAGGTGCGAAGAATTTGG 59 NA Rattus norvegicus 81 Agtr2 ENSRNOG00000050006 ENSRNOT00000074269 2 1 1 89 X 119390213 119391119 TCTGGAAGAAAGAGTGTAAGGA 59 119391169 119391187 GGTGATGTTTCTGCTGGTG 59 NA InUTR Rattus norvegicus 81 Ldlrad1 ENSRNOG00000037795 ENSRNOT00000057372 3 1 1 80 5 126818033 126818927 GAACTTGTGTCGAGATTTGC 58 126818969 126818988 GAGTAGATCCAGGAGTCTGG 58 NA Rattus norvegicus 81 Tmem59 ENSRNOG00000009778 ENSRNOT00000013224 2 1 1 80 5 126794375 126794393 GCACAGAGCTTCATAACCT 58 126794435 126796189 CGGCTTAGACTGGAATATGAC 58 NA Rattus norvegicus 81 Arl2 ENSRNOG00000021010 ENSRNOT00000028525 1 1 1 80 1 221507384 221507404 AGAAGATGTGGACACCATCTC 60 221507235 221507344 CAGATGTTCAGCTTGAATCCC 59 NA Rattus norvegicus 81 AABR07061068.1 ENSRNOG00000057187 ENSRNOT00000072325 2 1 1 60 4 103496072 103496093 AGAGTCTGCTACATAGTAATGG 57 103496114 103496132 TTTCCTGGCTTCTGAAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Reck ENSRNOG00000014863 ENSRNOT00000084031,ENSRNOT00000060264 3 2 2 80 5 59399496 59399515 GAGCTCTGTGAAGTAAACCG 59 59399557 59402202 CAATTTGCAGCCTTGAACAC 59 NA Rattus norvegicus 81 Frk ENSRNOG00000000543 ENSRNOT00000000653 1 1 1 80 20 41344897 41346737 GCCATGCTTAAAGATTCAGGT 59 41346779 41346797 GAGTTGCGGTCTATCTCCC 60 NA Rattus norvegicus 81 Sp7 ENSRNOG00000014082 ENSRNOT00000081758 1 1 2 80 7 143967292 143967310 TTGCCAGTAATCTTCGTGC 59 143960108 143967249 CATAGTGAGCTTCTTCCTGG 58 NA InUTR Rattus norvegicus 81 RGD1310257 ENSRNOG00000014186 ENSRNOT00000018989 2 1 1 63 1 75354550 75354568 ATGTCCAACAAGTCCACAG 58 75347354 75347372 GCTTGACAGTGATGAAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Creld2 ENSRNOG00000004659 ENSRNOT00000006357 1 1 1 80 7 129814229 129814249 ATTTGAGTGGTTCTGTGTACG 59 129814290 129815041 CCCTGGCATTCTTTACAGTC 59 NA Rattus norvegicus 81 Mir181d ENSRNOG00000036417 ENSRNOT00000054529 3 1 1 64 19 25290102 25290120 ATTCATTGTTGTCGGTGGG 59 25290056 25290074 CCACAGTGACATTCATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdcp2 ENSRNOG00000009221 ENSRNOT00000012427 1 1 1 80 5 126698651 126703610 GCTATGGAAGGTGTCAAGTG 59 126703651 126703671 ATACAGACTTGGGAAGTTTGG 58 NA Rattus norvegicus 81 LOC497899 ENSRNOG00000022555 ENSRNOT00000038838 3 1 1 173 10 36710610 36711487 CTGGGTTATACAGAAGCAAACC 59 36709956 36709978 CATTTCCTGTTCAACTACTTCCC 60 NA InUTR Rattus norvegicus 81 Vom1r23 ENSRNOG00000047128 ENSRNOT00000059638 3 1 1 60 1 61686791 61686811 GGGTTCTGATGCACTTAACTG 59 61686751 61686770 TGGAGTATGCCTTTGGAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000045718,ENSRNOT00000082871 2 2 6 80 10 53781375 53781393 CCTATGTGAAAGCAACCGT 58 53781436 53781550 TAACTGTGACAGTAGCTCCA 58 NA Rattus norvegicus 81 Lrp12 ENSRNOG00000004152 ENSRNOT00000005668 1 1 1 80 7 78867206 78867224 CTGCTTGTCATTGCTCTGG 59 78865639 78867165 CAACTGGGTCTCAAATGATCTC 59 NA Rattus norvegicus 81 LOC619574 ENSRNOG00000036666 ENSRNOT00000054922 3 1 1 80 10 110429239 110429682 CTATTACAGTGGAGATAGTCTGGG 60 110429182 110429201 TCCTCCAAGTTCTGTACAGC 60 NA Rattus norvegicus 81 Mrps34 ENSRNOG00000015479 ENSRNOT00000021075 3 1 1 125 10 14257551 14257654 CTTTCAAAGGGAAGAGTGAGG 59 14257741 14257759 ATCTGTCCTCTGCTTTCCC 59 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000085008,ENSRNOT00000092008,ENSRNOT00000085245,ENSRNOT00000028249 1 4 7 81 1 83764531 83765550 TTCCATTGGAAAGCGATTCTG 59 83765593 83765611 GTTCTGCAAGATGGTGGTG 59 NA Rattus norvegicus 81 Pcbd1 ENSRNOG00000000566 ENSRNOT00000000687 2 1 1 80 20 30694402 30695946 TTAACGTGTACAACAAGGTCC 59 30695988 30696006 TGGCCAGGTTTATATCCCG 59 NA Rattus norvegicus 81 Mum1 ENSRNOG00000024549 ENSRNOT00000060708 1 1 1 80 7 12344747 12344766 ATCCAGGTTAAGAGCTCAGC 60 12342981 12344705 ATTCTGAGAGGCCAAGAAGG 60 NA Rattus norvegicus 81 Phlda2 ENSRNOG00000020614 ENSRNOT00000027972 3 1 1 167 1 216703151 216703169 ATCGACTACCAGAACCGTC 59 216702704 216702723 TATCTTCGGTGAAGAACAGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100363043 ENSRNOG00000029146 ENSRNOT00000049927 3 1 1 65 15 33333517 33333535 CACTCTTGTGATCTCTGGG 57 33336745 33336763 GTGGAAGACGATTCCAGTG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ube2h ENSRNOG00000048205 ENSRNOT00000074649,ENSRNOT00000078961 1 2 2 80 4 57561514 57561534 GCAAACATGAGGTTACAATCC 58 57560184 57561474 CTTCATATGGTGTTCCTTGTG 57 NA Rattus norvegicus 81 Nhej1 ENSRNOG00000018162 ENSRNOT00000024444 2 1 1 80 9 82312725 82312743 CATTGCTTCGGATGAAGGA 58 82311886 82312681 CTGTCTTCAATCGACCTCG 58 NA Rattus norvegicus 81 Kcnk4 ENSRNOG00000021140 ENSRNOT00000028704 1 1 1 80 1 222185630 222185648 AACCACTCATCAGCTTGGA 59 222185443 222185587 TATATTGCCGTAGCCGATGG 60 NA Rattus norvegicus 81 Tbc1d22a ENSRNOG00000017057 ENSRNOT00000022945 2 1 1 80 7 127189312 127223131 AGTACACAGACCAGGAGGA 59 127223175 127223193 TATCAGCCTCAATGTTGCG 58 NA Rattus norvegicus 81 Mfap3l ENSRNOG00000011775 ENSRNOT00000015759 3 1 1 86 16 32753180 32753204 CTATCATGTTACTCTACACATCCTG 59 32752410 32753139 ATCAAGGATCTAAGTTCCTGGT 59 NA InUTR Rattus norvegicus 81 Siva1 ENSRNOG00000028640 ENSRNOT00000031788,ENSRNOT00000065213 3 2 2 84 6 137210243 137212042 GGTCTTCGAAAGAACCAAGC 60 137212087 137212107 GTTGATGGAACAACCTTCACC 60 NA Rattus norvegicus 81 LOC100909538 ENSRNOG00000048428 ENSRNOT00000074545 2 1 1 63 15 2733221 2733239 CAGGGTGGATGAAGTCTGG 60 2734068 2734087 AAATCGGTTATTTGCCGTGG 60 NA DesignNoJunction Rattus norvegicus 81 Jph4 ENSRNOG00000025589 ENSRNOT00000033722 2 1 1 77 15 33773992 33774732 ATGGAGGCACTTACCAAGG 59 33773933 33773951 GGTGGTAGGGTACACTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Jph4 ENSRNOG00000025589 ENSRNOT00000033722 3 1 1 79 15 33773992 33774732 ATGGAGGCACTTACCAAGG 59 33773931 33773949 CTGGTGGTAGGGTACACTC 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0748.1 ENSRNOG00000022251 ENSRNOT00000029030 1 1 1 60 X 73988830 73988850 AGAGACACTGACCTTCAAGAG 59 73988790 73988811 GTAAAGCAAAGCATAGACCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_8_0102.1 ENSRNOG00000008114 ENSRNOT00000010872 1 1 1 60 8 10140456 10140477 AGAGGAAATGGCTAGTGATGAG 60 10140498 10140516 ATGGCTTCTTTGGTCAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sbno2 ENSRNOG00000013987 ENSRNOT00000068197,ENSRNOT00000077146 1 2 2 80 7 12505611 12505629 GTATGATGCAGAACGGGAC 58 12505672 12505793 TCACCGTACTTGATCTTGCT 59 NA Rattus norvegicus 81 Patl1 ENSRNOG00000021052 ENSRNOT00000066247 3 1 1 80 1 228347101 228347119 CTGAATTCCAGCATCTGGG 58 228347162 228347670 CACTGTAGGCATTTCCTGAG 58 NA Rattus norvegicus 81 Ctsq ENSRNOG00000017946 ENSRNOT00000024208 1 1 1 80 17 3995054 3995755 CTACCAGAAAGGTGTTTATCATGAG 60 3995793 3995811 TCAAATCCATAGCCCACCA 59 NA Rattus norvegicus 81 Slx1b ENSRNOG00000019369 ENSRNOT00000077226 1 1 2 80 1 198112418 198116489 GGAATTAGAGGAGGCATTGC 59 198112357 198112378 TCAATGTAGTGGGCATTAAAGC 59 NA Rattus norvegicus 81 Fpgt ENSRNOG00000009548 ENSRNOT00000088561,ENSRNOT00000052396 2 2 3 83 2 261397314 261399391 GTTAATTCACTCCGGTGGC 59 261397249 261397267 TCACCAAGTGGTAAGGCTG 60 NA Rattus norvegicus 81 LOC690918 ENSRNOG00000042246 ENSRNOT00000067992 1 1 1 118 5 56798684 56798702 TAACTGGAGACGCTGAGAG 59 56799035 56799056 CGGATTTATGTCATCAGGTCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Col23a1 ENSRNOG00000003349 ENSRNOT00000064078 3 1 1 89 10 37014996 37015014 CAGGATCTTAGATGCCCTG 57 37016662 37017365 AATCCAAGTTCACCCTTGG 58 NA Rattus norvegicus 81 RGD1559972 ENSRNOG00000031273 ENSRNOT00000041326 3 1 1 60 11 82366305 82366323 CCACTTGAAGAGGAACCAG 58 82366263 82366284 CAACGTCCATAATTTATCCAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clca2 ENSRNOG00000013771 ENSRNOT00000018435 2 1 1 80 2 250980266 250980288 GTACAGATTCTAATACCTGCCAC 59 250977527 250980228 GACATTTGCCTTGTCAAAGGA 60 NA Rattus norvegicus 81 Trappc8 ENSRNOG00000022202 ENSRNOT00000021263 2 1 1 80 18 15311455 15311474 AGCCTGCAGAAGGATTAGTC 60 15311515 15319816 CAAACCATGGAGTAGTAGCAC 59 NA Rattus norvegicus 81 Snrpa ENSRNOG00000001501 ENSRNOT00000002053 3 1 1 80 1 84005465 84007718 GAGAAGATCAAGAAAGATGAGCTC 59 84005408 84005428 CACCAGGATATCCAGGATCTG 60 NA Rattus norvegicus 81 Agrn ENSRNOG00000020205 ENSRNOT00000045678,ENSRNOT00000047854 1 2 2 80 5 173595748 173595934 CTGTCAGACAGTCCTGGAG 59 173595686 173595706 CCTTTCAGTTCCAGGTAGGAG 60 NA Rattus norvegicus 81 AABR07029195.1 ENSRNOG00000003401 ENSRNOT00000004583 2 1 1 80 10 12871177 12871196 CACCTTTGACGCTATCTCCA 60 12871098 12871136 TTCACAGATTTGGTGAACACG 60 NA Rattus norvegicus 81 Carm1 ENSRNOG00000031129 ENSRNOT00000048245,ENSRNOT00000041577 2 2 2 80 8 22619280 22619298 CCTGATGGCCAAATCTGTC 59 22619340 22619549 AATGGGATTTCTATCCTGTGC 58 NA Rattus norvegicus 81 Xrcc3 ENSRNOG00000012141 ENSRNOT00000016208 3 1 1 91 6 136371786 136371874 GTCTGCAGGTTTGTGTCTC 59 136371713 136371731 CCATCAGTTGCATCAGGAG 58 NA Rattus norvegicus 81 Olr302 ENSRNOG00000045957 ENSRNOT00000051727 2 1 1 60 1 213071251 213071271 TCATCCCACCTCATTGTAGTC 59 213071290 213071311 GACTGATATAGGCACAGAACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gabra2 ENSRNOG00000002349 ENSRNOT00000064779,ENSRNOT00000003197 3 2 2 80 14 39755953 39786536 ACTGTGTTTGGAGTAACAACTG 59 39786577 39786595 ATAGGCCACTTTGGGAAGG 59 NA Rattus norvegicus 81 AABR07065656.7 ENSRNOG00000055719 ENSRNOT00000042728 1 1 1 64 6 138954280 138954301 GCCACTTATTACTGTACAACAG 57 138953964 138953983 ACACAGACAAAGAAACTCCA 57 NA DesignNoJunction Rattus norvegicus 81 Lrrc32 ENSRNOG00000015310 ENSRNOT00000020520 2 1 1 80 1 163449698 163453631 TGTAGGACGGTGAACAAGG 59 163453674 163453693 TTGGATGTCCAATGAGAGCA 60 NA Rattus norvegicus 81 Yipf7 ENSRNOG00000002224 ENSRNOT00000003024 1 1 1 80 14 62577400 62594261 CTATGGATCCAGACAACCAC 58 62577339 62577360 TCTGATGACAAGAACATCTCTG 58 NA Rattus norvegicus 81 Kif2b ENSRNOG00000002535 ENSRNOT00000003421 1 1 1 60 10 79096054 79096072 CTTACCCTCCAACTGACCA 59 79096012 79096030 TCCGAATTTGTATTGCCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1308751 ENSRNOG00000039954 ENSRNOT00000083451,ENSRNOT00000090013,ENSRNOT00000061398,ENSRNOT00000061391 3 4 4 81 17 4256428 4256725 TACAACACGAACGAAGAAGG 58 4256769 4256787 GATAGTCCTCGTTGTGCAG 58 NA Rattus norvegicus 81 Pcgf1 ENSRNOG00000008360 ENSRNOT00000011173 2 1 1 80 4 113912373 113912391 TGACCACTCTAAAGCCCAC 59 113912434 113912671 TTGTCTTTGCCAGAACTCAG 59 NA Rattus norvegicus 81 Tspan33 ENSRNOG00000007900 ENSRNOT00000010989 1 1 1 80 4 56981523 56981541 AGGAGTTCTCCTTCGTCAG 59 56981584 56996271 TGACCATGGAAATTACCCAG 58 NA Rattus norvegicus 81 Atxn10 ENSRNOG00000014637 ENSRNOT00000021071 1 1 1 80 7 126283919 126283939 TTTAAGTCTCACCTCATCCGT 59 126283979 126327319 ATCCAGCTCATTCACTTTGTC 59 NA Rattus norvegicus 81 Zfp64 ENSRNOG00000012762 ENSRNOT00000017063 2 1 1 85 3 165739859 165739877 GTCAGAAGAGACAGTGCCT 59 165728315 165739811 GAGCTGCAACTGTGATAGTC 59 NA Rattus norvegicus 81 Myh8 ENSRNOG00000050042 ENSRNOT00000057260 2 1 1 80 10 53821148 53821167 TGATGACCCACCTTCATGAG 60 53821207 53821314 CTGAGTAGGTGTAGATCATCCA 59 NA Rattus norvegicus 81 Exosc3 ENSRNOG00000012409 ENSRNOT00000016582 2 1 1 80 5 60868848 60870634 ACCAAATGTACAGGTTGGAG 58 60868787 60868807 ATACAGACCATTTCTGGTTCC 58 NA Rattus norvegicus 81 Dhx37 ENSRNOG00000022171 ENSRNOT00000030823 1 1 1 80 12 36600005 36600969 TGTCACATCGGGTTGTCTC 60 36601009 36601031 CATCTGTCATGAACTTGATCCTG 60 NA Rattus norvegicus 81 Klrc2 ENSRNOG00000052467 ENSRNOT00000080299 1 1 3 80 4 163440921 163440941 TGGATTCTTTCGAAAGAGCAG 59 163440556 163440880 AGCATCTCCGTTATCCTTGG 60 NA Rattus norvegicus 81 Lsm3 ENSRNOG00000008733 ENSRNOT00000011557 3 1 1 80 4 123162985 123165406 GAGGCAGATTACATGCTTACG 59 123165446 123165466 CAATCTCTATCGTCGTCACAG 58 NA Rattus norvegicus 81 Smpdl3b ENSRNOG00000042326 ENSRNOT00000067905 1 1 1 80 5 150929969 150931906 CAAAGAAGGTGCCTTCTATTCTG 60 150929911 150929931 TACAGATTGGTGTTGAGGACC 60 NA Rattus norvegicus 81 Cerk ENSRNOG00000017022 ENSRNOT00000022882 2 1 1 80 7 127019980 127019998 CTTATCCGGAAATGCTCCA 57 127018921 127019936 AGTGAAGCCAAACTGATCC 58 NA Rattus norvegicus 81 RGD1559786 ENSRNOG00000012724 ENSRNOT00000065275 2 1 1 81 5 127491632 127491839 GGAGAACTCTATTGAAATTCTGAGC 60 127492939 127492963 CTCTACTATTGTCTTGAACTTCTCG 59 NA Rattus norvegicus 81 Zbtb43 ENSRNOG00000017017 ENSRNOT00000022814 1 1 1 80 3 12502825 12502844 TATTCATCCCAGATAGGGCA 58 12494595 12502783 CTTGTTTAGTGTGGTTCGAC 57 NA Rattus norvegicus 81 Dkk3 ENSRNOG00000016343 ENSRNOT00000022301 3 1 1 84 1 176976048 176976066 AACTACCACAACGAGACCA 59 176974099 176976003 TGTTGGTTATCTTGTGAACCTC 59 NA Rattus norvegicus 81 LOC100909593 ENSRNOG00000047854 ENSRNOT00000078036 1 1 2 60 20 3938479 3938497 GGACACAGAAATGGCTTGG 59 3938519 3938539 AAGCATGTTTCCCATAAGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spire2 ENSRNOG00000016920 ENSRNOT00000022823 2 1 1 80 19 56161396 56161773 CTCCACTGAAGCAGGTCTC 60 56161817 56161835 CCTCCAGGATCTTCTCGTG 59 NA Rattus norvegicus 81 Prr14 ENSRNOG00000018518 ENSRNOT00000055002 1 1 1 80 1 198915583 198915603 ATTCAGCAACAAATACGGAGG 59 198915651 198915922 ATTCAAGGCACTGATTGGTC 59 NA Rattus norvegicus 81 Pced1a ENSRNOG00000021221 ENSRNOT00000082369,ENSRNOT00000055810 2 2 2 89 3 122942747 122943060 CTTCTCAATGCCAGGATGTG 59 122942677 122942695 TGTTGACCATGGGAGACAG 59 NA Rattus norvegicus 81 C1s ENSRNOG00000011971 ENSRNOT00000016330,ENSRNOT00000056058 3 2 2 80 4 157154004 157154024 CACCTTTACTTCACCCATCTG 59 157153645 157153964 GATGCCTCCTGAGATTATCTG 58 NA Rattus norvegicus 81 Mir881 ENSRNOG00000041299 ENSRNOT00000063052 1 1 1 60 X 151283957 151283978 AATATTCAGAGTGGTAGCAGTC 58 151283918 151283939 ACTCTATTCAGAAATGCCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5a1 ENSRNOG00000017032 ENSRNOT00000022892 3 1 1 80 18 74163369 74163853 GACAGTACTCTCCCATGGC 60 74163893 74163915 GCTCCAGTTTATCAAGATAACCC 59 NA Rattus norvegicus 81 Olr35 ENSRNOG00000030788 ENSRNOT00000071384 3 1 3 82 1 164705858 164706243 AACTCTAGATGTTCCAGCCA 59 164706288 164706306 CTACTGACCCATTGCAGGT 59 NA Rattus norvegicus 81 RGD1305298 ENSRNOG00000007184 ENSRNOT00000009444,ENSRNOT00000089238 3 2 3 86 6 135088718 135089318 GCCTTCAGATCAACTCCAG 58 135087759 135087779 CTGAGTCTCCATCATAAGGGT 59 NA Rattus norvegicus 81 Gabrr1 ENSRNOG00000007603 ENSRNOT00000010172 2 1 1 80 5 48400958 48401914 TCGAAAGCTATGCCTACAC 57 48401955 48401976 TCCTCTCATCTGTCTTTAAGGA 58 NA Rattus norvegicus 81 RGD1307315 ENSRNOG00000013690 ENSRNOT00000018568 1 1 1 80 6 137392027 137392767 GATTCAGACCAAGCTCTCAG 58 137392809 137392828 AGTGGTGTCTTCAGAAACAG 58 NA Rattus norvegicus 81 Zfp52 ENSRNOG00000042826 ENSRNOT00000050119 2 1 1 80 1 61406308 61418950 AGCTAAGGATCCAGAACCA 58 61418993 61419012 GCCATTTCTTCCTGTTTCTC 57 NA Rattus norvegicus 81 Clec12a ENSRNOG00000054860 ENSRNOT00000087113 1 1 1 60 4 163122245 163126754 TTAAGAACAAGGATGAGCTGG 58 163126771 163126794 GCTAGCCAATAATTGTATAGCTCC 60 NA DesignNoJunction Rattus norvegicus 81 Clec12a ENSRNOG00000054860 ENSRNOT00000087113 2 1 1 60 4 163120440 163120464 GATTCTGATTCTTCTATGCCTTCTG 60 163120481 163121030 AAAGATGCATCCTAAGGCCA 60 NA DesignNoJunction Rattus norvegicus 81 AABR07058267.1 ENSRNOG00000005486 ENSRNOT00000007587 2 1 1 80 7 107413914 107414164 CTTCAGTACCAGAAGTGCC 58 107414205 107414226 CACAACTTAAATCAAGAGGGAG 57 NA Rattus norvegicus 81 Syt10 ENSRNOG00000014296 ENSRNOT00000019406 3 1 1 80 7 130771983 130775418 TCATGGATTACGACAGGGTG 60 130771922 130771940 CTCTTCCAAGACCCTCAGC 60 NA Rattus norvegicus 81 AABR07012635.1 ENSRNOG00000053190 ENSRNOT00000087593 1 1 1 80 2 200820328 200820347 TAACAAGGAGGCTCCAAGAG 59 200806171 200820285 GGCAGCATTCTGATGTCTG 59 NA Rattus norvegicus 81 Rcbtb1 ENSRNOG00000021712 ENSRNOT00000037800,ENSRNOT00000081373 2 2 2 80 15 39645006 39645025 TGGTCAAACAAGTGGTTGAG 59 39645067 39648855 CCCAAGCAAATAACTCTCCA 58 NA Rattus norvegicus 81 Sprn ENSRNOG00000018927 ENSRNOT00000025609 2 1 1 60 1 212622187 212622205 AGGAGTCTACAGCTACTGG 58 212622145 212622163 AATACGTGGACTGTGTACG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir742 ENSRNOG00000040422 ENSRNOT00000062175 3 1 1 60 X 151260357 151260375 CACATGGTTGCTAATCACG 57 151260315 151260336 AGCTTTACTTTACCCAACATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Neu3 ENSRNOG00000018106 ENSRNOT00000024420 2 1 1 80 1 164810064 164814474 TGAGCTGAGAAGTCATGGA 58 164810002 164810023 TAATCCTGTTCTGTTCTTCCTG 58 NA InUTR Rattus norvegicus 81 Reep1 ENSRNOG00000008481 ENSRNOT00000064772 2 1 1 86 4 99681305 99681326 GTCAAATGGATGATGTACTGGA 58 99681372 99696932 GAATGGAAACCAGCAAAGGA 59 NA Rattus norvegicus 81 Wars ENSRNOG00000004359 ENSRNOT00000006128,ENSRNOT00000050350,ENSRNOT00000080163 1 3 3 80 6 132777441 132777460 CTTTCCCGAAGATCTTCCGA 60 132777175 132777398 TTCTGAAGTACGGGTCCTG 59 NA Rattus norvegicus 81 Robo2 ENSRNOG00000029598 ENSRNOT00000090497,ENSRNOT00000066439 1 2 3 82 11 11516875 11585030 ATTCGGACTGACGGATCTC 59 11516811 11516829 TTGGAGACGATGACGTCAG 60 NA Rattus norvegicus 81 Slc25a46 ENSRNOG00000017091 ENSRNOT00000023032 2 1 1 80 18 24371278 24381689 TCGAAACAGTACAGAGTGAG 57 24371217 24371235 CTATCACCCGTCCAATTCC 58 NA Rattus norvegicus 81 Zc3hc1 ENSRNOG00000010154 ENSRNOT00000013604 3 1 1 80 4 57692207 57693191 TGACAACTATGTGCTTGACAG 59 57692147 57692166 CATCGATTTGGAAATCGAGC 58 NA Rattus norvegicus 81 Olr937 ENSRNOG00000049098 ENSRNOT00000050023 1 1 1 60 7 8810428 8810448 GAAATCTCGCTGACATCTACC 59 8810388 8810409 TATTCATGGTCACTATGCTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir676 ENSRNOG00000061112 ENSRNOT00000090243 2 1 1 61 X 70207031 70207049 GACTCTGCAACCTTAGGAC 58 70207074 70207092 CATAGCTCGACAAGCTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd13c ENSRNOG00000011340 ENSRNOT00000015170 3 1 1 81 2 264809250 264814658 AGGTATCAATATCAGGCTTGAC 58 264814700 264814718 GAAGATGAAGCTCAGGTCC 58 NA Rattus norvegicus 81 AC094246.1 ENSRNOG00000022718 ENSRNOT00000031545 2 1 1 83 1 255710786 255710829 GGACATTTACTACATCAGGCTG 59 255710873 255710891 GTGAACTGGTTGATGGCAG 59 NA Rattus norvegicus 81 Nkain2 ENSRNOG00000029608 ENSRNOT00000047224 3 1 1 80 1 27561987 27562005 CTAGTCCTCTGGGTGACCT 60 27749859 27936943 AAGGTCTGTTTCCCTACTGAG 59 NA Rattus norvegicus 81 Pdcd4 ENSRNOG00000014779 ENSRNOT00000020155 1 1 1 80 1 274631219 274632762 CCAAAGAAAGGTGGTGCAG 59 274632806 274632824 TTTCACATCCACCTCCTCC 59 NA Rattus norvegicus 81 Pdcd4 ENSRNOG00000014779 ENSRNOT00000020155 3 1 1 80 1 274634568 274634586 TGAGAAGACGTTAACACCC 57 274634629 274640028 AAATCCCTTAACATCTCCGC 58 NA Rattus norvegicus 81 Fam43a ENSRNOG00000001728 ENSRNOT00000002355 3 1 1 60 11 73677730 73677748 CACCACTTCCTCTGTCAGG 60 73677688 73677709 CTAATAAGCTGTGACAGTTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhl9 ENSRNOG00000006335 ENSRNOT00000008510 2 1 1 60 5 107324563 107324581 CAGTCAGACAGAACTGCCA 60 107324603 107324623 AAACTCCTCCTAACGTAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102547344 ENSRNOG00000030156 ENSRNOT00000041707 2 1 1 86 18 19275141 19275159 CTTGGACACAACAGCACAG 59 19272826 19275093 AGTATCTGGGTTTGGTGTCTG 60 NA Rattus norvegicus 81 Slc39a4 ENSRNOG00000014314 ENSRNOT00000040422,ENSRNOT00000071522 2 2 2 80 7 117678338 117678359 TCAGTACTTTGTGGACTTTGTG 59 117678179 117678298 ATCAAATCCTCCAATTCGGG 58 NA Rattus norvegicus 81 LOC498368 ENSRNOG00000002191 ENSRNOT00000002982 2 1 1 91 14 46052423 46053140 CAAAGCTATCTCTTTGATCCAG 57 46052353 46052371 CTGACAGTGTCATCCTCCT 58 NA DesignNoJunction Rattus norvegicus 81 LOC683745 ENSRNOG00000021575 ENSRNOT00000060160 2 1 1 80 13 56693421 56693440 CCTTCAGGATCATACTGGGA 58 56676781 56693380 TAAACATGTCTTGAGGCATGG 59 NA Rattus norvegicus 81 Rn60_10_0698.7 ENSRNOG00000051109 ENSRNOT00000076821 2 1 1 60 10 70097746 70097767 TGAGCCACTCATTGATTTAGAC 59 70097707 70097728 CAATGCTGATGGAAGTAATCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sept14 ENSRNOG00000038495 ENSRNOT00000068460 3 1 1 85 12 30606207 30606225 TGAATGTTTGCCCACTCAG 58 30606273 30607031 CAATTCCAGTTTCTCCCACG 59 NA Rattus norvegicus 81 Rnf217 ENSRNOG00000013323 ENSRNOT00000017831 2 1 1 80 1 28386914 28386934 GGATGCAAATATCGCTACCTC 59 28386976 28389611 GAAGAGCTTTCCAGCACAG 59 NA Rattus norvegicus 81 Krtcap3 ENSRNOG00000047941 ENSRNOT00000073236 2 1 1 113 6 26486161 26486264 GACTACTGAGCGTTACCGT 59 26485945 26485963 CAGACAAGAGCAGGTTCAC 59 NA Rattus norvegicus 81 Mlx ENSRNOG00000019983 ENSRNOT00000027116 1 1 1 80 10 88998369 88998387 GGGAGTGTAGTGTCCAGAG 59 88998430 88998709 ATCGCTGTCCTCATCATCTG 60 NA Rattus norvegicus 81 AC103169.1 ENSRNOG00000054122 ENSRNOT00000088247 1 1 1 60 7 9104618 9104639 ATTCCTGCTTCTTACCTATCTG 58 9104579 9104597 GGTGAGTGTGATGATGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lims2 ENSRNOG00000016021 ENSRNOT00000061054,ENSRNOT00000090923 1 2 2 86 18 24744870 24745415 ACTCTGAAGAACAAGTTTGTGG 59 24745461 24745480 CCTCTTCTTCAGTTCCAGGG 60 NA Rattus norvegicus 81 Ccdc86 ENSRNOG00000020925 ENSRNOT00000028405 1 1 1 80 1 227001361 227001380 CTTCCTGTAATTCCGAAGGG 58 226998671 227001318 AACCATCTGGGAGAACCTC 59 NA Rattus norvegicus 81 Olr1059 ENSRNOG00000032290 ENSRNOT00000044356 3 1 1 60 7 16364077 16364098 TGGGACTCAAACTTGATTTCTG 59 16364117 16364137 GAAGTGTCACATAGGAAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crtap ENSRNOG00000009878 ENSRNOT00000074238 1 1 1 80 8 122398415 122401658 ACTTCAAGGCCAATGACCT 59 122398353 122398371 TCATCATCTCGTCCTCAGG 58 NA Rattus norvegicus 81 Polr3c ENSRNOG00000033560 ENSRNOT00000028815 3 1 1 80 2 198843621 198843640 CAATGCTCCGAATGAGTGAG 59 198841791 198843582 ATCTGAAGATCTCATTGGAGGAC 60 NA Rattus norvegicus 81 LOC100912233 ENSRNOG00000048600 ENSRNOT00000043926 1 1 1 84 14 658742 659515 AATCAAGTCCTAGGGTGCC 59 658676 658696 GGGAATCCAAGTCTTTCTGTG 59 NA Rattus norvegicus 81 Stat5b ENSRNOG00000019075 ENSRNOT00000026354,ENSRNOT00000081247 1 2 2 80 10 88699368 88699465 CCACTTCAGAAACATGTCCC 59 88699307 88699326 GTGAACTTCTCTTCCGTGAC 59 NA Rattus norvegicus 81 Hmgb2l1 ENSRNOG00000033321 ENSRNOT00000046874 3 1 1 60 11 49708651 49708671 AGATACTGCAAAGAAACTGGG 58 49708611 49708630 CGGTTGTTTATCTTTGGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC141516.2 ENSRNOG00000057036 ENSRNOT00000089423 3 1 1 82 11 87296433 87296453 TTCATCTTTCACGGCTATGAC 59 87296497 87296939 TGTACTCGCAGTAGCACTG 60 NA Rattus norvegicus 81 Tmem204 ENSRNOG00000016494 ENSRNOT00000022142 3 1 1 82 10 14431955 14442190 ACCGTCAAACTACAGTTTGAC 59 14431893 14431911 ATGAAGGTGATCTGACCCA 58 NA Rattus norvegicus 81 Secisbp2l ENSRNOG00000008629 ENSRNOT00000011551 3 1 1 80 3 118019296 118020576 CTCCCAGGAAGATACTGGAC 59 118019235 118019257 GTCATACAGTATGGAGAGTTCTG 58 NA Rattus norvegicus 81 LOC100912481 ENSRNOG00000046950 ENSRNOT00000057382,ENSRNOT00000086607 1 2 2 80 4 24633477 24637648 GGTTGTCAAGATGAACAAGAG 57 24637690 24637708 TCACCTTTAGGCTTTCCTG 57 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000064785,ENSRNOT00000029878,ENSRNOT00000029865,ENSRNOT00000060292,ENSRNOT00000000814 2 5 5 80 13 55080674 55085391 CTACATTGATGGCTTCAAGGA 58 55080406 55080426 TTCCAGAAGTCATCAACTGTC 58 NA Rattus norvegicus 81 Rpf1 ENSRNOG00000015969 ENSRNOT00000021705 1 1 1 80 2 252379291 252380943 GCTCTTGGTGATAAGGCTC 58 252379229 252379247 GTCTACTGTGGTCTCATCG 57 NA Rattus norvegicus 81 Sectm1b ENSRNOG00000036673 ENSRNOT00000054932 3 1 1 91 10 110252810 110253057 ATAATAAAGAGTGGGACGAACC 58 110252740 110252758 GTTAGAGATGTTGCAGGCC 59 NA Rattus norvegicus 81 Rhobtb3 ENSRNOG00000012414 ENSRNOT00000016838 1 1 1 80 2 2665689 2665708 AACTGGGAGCTACCTATCTG 58 2661442 2665647 AATACTCCAACACTCCTCCA 58 NA Rattus norvegicus 81 Rab4a ENSRNOG00000017467 ENSRNOT00000049337 2 1 1 80 19 56610442 56611582 AATTGAATCAGGTGAGCTGGA 60 56611624 56611642 GACCGTAGCTGTCTCAAGG 60 NA Rattus norvegicus 81 Plekhh3 ENSRNOG00000020238 ENSRNOT00000027452 1 1 1 80 10 89077310 89077328 CTAATAGGCCCTCACACCT 58 89076829 89077266 CATGATCTCTTCCACCTGG 57 NA Rattus norvegicus 81 LOC498836 ENSRNOG00000025687 ENSRNOT00000028924 1 1 1 108 18 25370077 25370453 GTAAATGCCATGGGAAGCC 59 25369987 25370008 CATAGGAACATGTTGTGAAGGA 59 NA DesignNoJunction Rattus norvegicus 81 Qdpr ENSRNOG00000003253 ENSRNOT00000004385 2 1 1 80 14 70169282 70170169 TGCCAAATCCAAGTCACTC 58 70170213 70170231 AAGTGGCTAGAGATGGTGG 59 NA Rattus norvegicus 81 LOC100910833 ENSRNOG00000006587 ENSRNOT00000009120 2 1 1 80 6 132068908 132068927 CCATCCATGATGTCTTCAGC 59 132035615 132068865 GAGGATGGGTCTGGATGAC 59 NA Rattus norvegicus 81 Atn1 ENSRNOG00000060594 ENSRNOT00000088895 3 1 1 88 4 157268127 157268145 CACTGGAACAGCAACAGTG 59 157267925 157268078 CTTCAGGTGACTGTAGTAGTCC 60 NA Rattus norvegicus 81 Hif1an ENSRNOG00000014234 ENSRNOT00000019070 2 1 1 83 1 264312463 264315090 GCATGGAAGGGAATGTGAC 59 264315136 264315155 AGATGCATCTCTTATGGCCT 59 NA Rattus norvegicus 81 LOC690045 ENSRNOG00000061895 ENSRNOT00000081946 3 1 4 80 4 163884672 163884691 GGATCGGATGTAAACAAGCA 58 163880783 163884631 GAAGGAACTTCAGTTCTTCCT 58 NA Rattus norvegicus 81 Gnmt ENSRNOG00000016349 ENSRNOT00000022307 3 1 1 80 9 16566990 16567008 GATGCTGAAATACGCACTG 57 16567052 16567626 TTGGCTTCTTCAATGACCC 58 NA Rattus norvegicus 81 Klhl35 ENSRNOG00000017365 ENSRNOT00000023386 2 1 1 81 1 164427550 164428117 ATGACATTTACGTTTCTGGAGG 59 164428158 164428177 ACCTTGATCCAGGTGTTCAG 60 NA Rattus norvegicus 81 Evpl ENSRNOG00000009343 ENSRNOT00000012373 2 1 1 80 10 105113482 105113591 TTGAGAAAGACATCAAGCAGC 59 105113422 105113443 GCACTATCTTCTCATACAGAGC 59 NA Rattus norvegicus 81 Camk4 ENSRNOG00000020478 ENSRNOT00000078822 2 1 2 108 18 25962966 25963096 TCCCTGAGGTCAAGAAACTC 59 25963167 25963185 ATGTGGACAAAGTTGGCTG 59 NA InUTR Rattus norvegicus 81 Klf9 ENSRNOG00000014215 ENSRNOT00000019367 3 1 1 152 1 240909486 240931712 GAGTGCATACAGGTGAACG 59 240931825 240931846 CACTCCTCATGAATCTCTTCTC 58 NA Rattus norvegicus 81 Olr109 ENSRNOG00000015919 ENSRNOT00000021304 1 1 1 80 1 168643819 168644026 CACATAACTATTCAACCACCTACC 59 168643762 168643783 TGGGATACAGAACCATATCTGC 60 NA Rattus norvegicus 81 LOC100912024 ENSRNOG00000032944 ENSRNOT00000046475 3 1 1 60 5 116973376 116973396 CACGACAATACAAGATCCCTG 59 116973414 116973436 TTCCTATCCTTTACGTCCTTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttll7 ENSRNOG00000031997 ENSRNOT00000075452,ENSRNOT00000055318 1 2 2 80 2 252785133 252785154 GTGGTTTACCGAATTCCTACAG 59 252785194 252786942 GTCTTTACCACCAACTCCGA 60 NA Rattus norvegicus 81 P2ry6 ENSRNOG00000019270 ENSRNOT00000050227 3 1 1 114 1 165974712 165975733 TGAGACAGATTCTCCAAGCA 59 165974617 165974636 TGAAATCCTCACGGTAGACG 60 NA InUTR Rattus norvegicus 81 Cep19 ENSRNOG00000024924 ENSRNOT00000037795 2 1 1 80 11 71933153 71933175 GAGAATGAAGCTGAAGGAAAGAG 60 71922827 71933113 AGCTCTGGTGCAATCTGAG 60 NA Rattus norvegicus 81 Ly49s6 ENSRNOG00000053337 ENSRNOT00000083610,ENSRNOT00000077539 1 2 3 80 4 164449584 164449604 GCTCACTGTGATTGCTATTGG 60 164446015 164449543 ACACAACCACTGTTTGTCAC 59 NA Rattus norvegicus 81 Ly49s6 ENSRNOG00000053337 ENSRNOT00000083610,ENSRNOT00000077539 2 2 3 81 4 164449583 164449603 CTCACTGTGATTGCTATTGGA 58 164446013 164449541 CAACACAACCACTGTTTGTC 58 NA Rattus norvegicus 81 Ly49s6 ENSRNOG00000053337 ENSRNOT00000083610,ENSRNOT00000077539,ENSRNOT00000079975 1 3 3 66 4 164451264 164451282 CTGAGGAGACTCAAAGGCC 60 164449587 164449606 ATAGCAATCACAGTGAGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Lin7a ENSRNOG00000004527 ENSRNOT00000006083,ENSRNOT00000072526 2 2 2 85 7 49531791 49531809 GAAGTACCAGTGCACAAGC 59 49531855 49589071 ATGTATTGATACACCTCTCGGA 59 NA Rattus norvegicus 81 AABR07065789.1 ENSRNOG00000006333 ENSRNOT00000008333 3 1 1 60 6 141291313 141291333 GAACTTGCTATTTCTGATGGC 58 141291195 141291214 CTGTACCAACTGGATCTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Lmf2 ENSRNOG00000030633 ENSRNOT00000049538 2 1 1 80 7 130322916 130322938 AGGAATTCTTCCCATCTGTATCC 60 130322764 130322882 GACTCTTATCCTTTAGTCCAAACTG 59 NA Rattus norvegicus 81 Cyb5d1 ENSRNOG00000045742 ENSRNOT00000074505 3 1 1 81 10 55997029 55997049 CTACTGTTGAAACCCATCCTG 59 55996841 55996986 GCTTGCGAATGTCTTTGGT 60 NA Rattus norvegicus 81 Cyp4a1 ENSRNOG00000009597 ENSRNOT00000012888,ENSRNOT00000057095,ENSRNOT00000051385 2 3 3 80 5 134498862 134498882 CTCCTTAATGACCCTAGACAC 57 134498921 134499369 CTCTTGTAATTTCCATCCACCT 58 NA Rattus norvegicus 81 Tbc1d15 ENSRNOG00000003889 ENSRNOT00000067907 2 1 1 80 7 58168178 58172855 CTTCGATTATGGGAGGTAATGTG 59 58168120 58168141 TGATTCCAAGATAGCACAACAC 59 NA Rattus norvegicus 81 Tma7 ENSRNOG00000047225 ENSRNOT00000075819 2 1 1 104 8 117820068 117820088 GAAGATAAGGCTTTCAAGCAG 57 117816008 117820003 CTTAATTCCACCTGTAGCCA 57 NA Rattus norvegicus 81 LOC690460 ENSRNOG00000042797 ENSRNOT00000065418 2 1 1 60 20 11604817 11604837 TCCAGTGACTTGAGCTATGAC 60 11604859 11604877 CAGTGCAAGAGTCACAGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab24 ENSRNOG00000016539 ENSRNOT00000021946 1 1 3 84 17 9831363 9831509 CTGGAGAAACGGAGGAGAG 59 9831557 9831575 ATCGGGTATGGTCAACTCC 59 NA Rattus norvegicus 81 LOC100910454 ENSRNOG00000013340 ENSRNOT00000017915 3 1 1 97 9 113728182 113728202 CTTTCTAGAAACCGTGAACCA 58 113728261 113729234 TGCACATGTGCTCTTTGTC 59 NA Rattus norvegicus 81 Vom2r11 ENSRNOG00000033775 ENSRNOT00000047766 3 1 2 82 1 86733176 86733194 GAAGAACCACTGCTTGCAG 60 86733104 86733132 GGGATATACTAGCAGGCAGAG 59 NA Rattus norvegicus 81 Dcaf10 ENSRNOG00000011655 ENSRNOT00000016384 2 1 1 80 5 60932653 60932672 CTGGTTCACCTTGTCATCAC 59 60932713 60932886 GTGAAACTCCTTCTCGTTGAG 59 NA Rattus norvegicus 81 Siglec10 ENSRNOG00000037339 ENSRNOT00000081922,ENSRNOT00000015941 1 2 2 82 1 98521275 98521376 GTTGGATGGGTCTCAAGGT 59 98521211 98521231 AGATACACAAACCCTCCTGTG 60 NA Rattus norvegicus 81 Oscar ENSRNOG00000055716 ENSRNOT00000090790 3 1 1 81 1 64187193 64187361 TCAGTTCCGAAGGTTCTGG 59 64187406 64187424 CAGATGAGGACCAGTCCTG 59 NA Rattus norvegicus 81 Hus1b ENSRNOG00000052502 ENSRNOT00000084871 2 1 1 60 17 34694059 34694078 CGTGAGTGTTTATCTGCCTG 59 34694101 34694119 ATTTGCCATCCTTTCCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adam33 ENSRNOG00000021242 ENSRNOT00000051404,ENSRNOT00000028854 1 2 2 80 3 123600989 123601012 AGGATACACAGAAACCTACTACAG 60 123600769 123600951 TGATAGTGGCAATGATCCGT 59 NA Rattus norvegicus 81 Bmpr1b ENSRNOG00000016289 ENSRNOT00000021963 2 1 1 80 2 247406303 247411440 GTGTTTCTGGAGGTATAGTGG 58 247406243 247406263 TCATGTCCTCATAAGAAGGGT 58 NA Rattus norvegicus 81 Tial1 ENSRNOG00000020271 ENSRNOT00000027463 1 1 1 80 1 199847491 199847513 GATGTAGTAAACCAGTCAAGTCC 59 199847323 199847453 CATAAGTTGATCTGTCAGCCC 59 NA Rattus norvegicus 81 Prmt3 ENSRNOG00000014829 ENSRNOT00000020853,ENSRNOT00000079655 3 2 2 82 1 105164874 105164892 CCACAAAGACAGCCATGTG 60 105188625 105188837 GAATACAACCCTGTTGTGACAG 60 NA Rattus norvegicus 81 Ecel1 ENSRNOG00000019447 ENSRNOT00000026387 2 1 1 80 9 94246916 94246935 TACATGATGGTCATGGTTGG 58 94246724 94246875 GTGGACCTCAAACTCATACTC 58 NA Rattus norvegicus 81 Ebf1 ENSRNOG00000028845 ENSRNOT00000076664,ENSRNOT00000047970 3 2 4 84 10 23664289 23664970 CAGCAATGGGATAAGGACC 58 23675997 23676016 TTGGCCTTCATACACTATGG 57 NA Rattus norvegicus 81 Rprd1a ENSRNOG00000016036 ENSRNOT00000021624 3 1 1 80 18 16474360 16474381 TATTATCCATTTGGGAAGAGCG 58 16474153 16474321 TCTTATCTCCATACAGAGCGT 58 NA Rattus norvegicus 81 Pdzk1ip1 ENSRNOG00000008161 ENSRNOT00000011434 2 1 1 191 5 133896293 133897980 TCAACAAGGTCTAGGGAACC 59 133899772 133899790 GAGTATCTGCCATCCATGC 58 NA Rattus norvegicus 81 Mov10l1 ENSRNOG00000031093 ENSRNOT00000042686,ENSRNOT00000050620 3 2 2 80 7 130018354 130020042 AGATAGGAGTGAGAGTTGGC 59 130020085 130020103 GGATAAGGCATTCTGGCTC 58 NA Rattus norvegicus 81 LOC100362620 ENSRNOG00000014130 ENSRNOT00000019234 2 1 1 81 17 13588743 13588761 GAAGAGGAGTGGAGGAGAC 59 13587973 13588698 GAATATGCGGTTCTGGCTC 59 NA Rattus norvegicus 81 AABR07044412.1 ENSRNOG00000061483 ENSRNOT00000082437 2 1 1 100 20 4957416 4957436 CTTCTTTAACCGCGACCTG 59 4957332 4957351 GTTCTTCCACTTTGTCACCC 59 NA Rattus norvegicus 81 Krtap27-1 ENSRNOG00000049035 ENSRNOT00000071257 1 1 1 60 11 28629663 28629682 CGACCTGCAAGTTACATGAC 59 28629622 28629644 GGGAACTTTCAAACACTGTAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Glyatl2 ENSRNOG00000012387 ENSRNOT00000016593 2 1 1 80 1 229547293 229548599 CAGATCCAAAGTTCACAGGC 59 229548642 229548660 CTTATGCTTGACCTTGCCC 59 NA Rattus norvegicus 81 Taok2 ENSRNOG00000019964 ENSRNOT00000064985,ENSRNOT00000085304,ENSRNOT00000081291 1 3 3 80 1 198316398 198316510 TCAAATGAGAAATGGCAGGA 58 198316337 198316357 CCGGTACTGAATGGTATTAGG 58 NA Rattus norvegicus 81 Decr2 ENSRNOG00000050424 ENSRNOT00000077826,ENSRNOT00000027593 3 2 3 93 10 15463701 15463876 ATGAAGATGTTGCAGGCAC 59 15463626 15463644 TCATGTAGCTGATGAGGGC 59 NA Rattus norvegicus 81 Tubg1 ENSRNOG00000020213 ENSRNOT00000027370 3 1 1 82 10 89033663 89034505 GCCTAGAGGGATTTGTACTG 58 89034550 89034568 ATTTAGCCGTTCCAAGAGG 58 NA Rattus norvegicus 81 Olr1063 ENSRNOG00000046346 ENSRNOT00000047647 1 1 1 60 7 9263108 9263127 ATCATTCTGTTGACTCTGCT 57 9263147 9263168 TTCGGAGGAAGAAATACATAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kdm4c ENSRNOG00000006644 ENSRNOT00000009083,ENSRNOT00000080303 2 2 2 80 5 90953997 90957139 AGACTAAGAACAATCAGTGGG 58 90957180 90957199 TCCTTTCTGGGACATTAGTG 57 NA Rattus norvegicus 81 Elovl5 ENSRNOG00000006331 ENSRNOT00000010409 2 1 1 80 8 85263851 85278866 TCTATGAGTTGGTGACAGGTG 60 85278907 85278926 TATCTGATTCTCCTGCGCTG 60 NA Rattus norvegicus 81 Wfdc18 ENSRNOG00000037097 ENSRNOT00000055923 3 1 1 66 10 71008759 71008781 GGGAATGAACATTACCTATGCTC 59 71009424 71009442 CTTGGGACACTTTCCAGGT 60 NA DesignNoJunction Rattus norvegicus 81 Il2 ENSRNOG00000017348 ENSRNOT00000023327 2 1 1 101 2 123851702 123851720 TTACAGGTGCTCCTGAGAG 58 123849149 123851552 TTTCAATTCTGTGGCCTGC 59 NA Rattus norvegicus 81 Fancc ENSRNOG00000016889 ENSRNOT00000022884 2 1 1 80 17 920150 920169 ACACTTGTCTTCACTTGTCC 58 917597 920108 TTGCATCAGAATCCATCTCC 58 NA Rattus norvegicus 81 Tmed11 ENSRNOG00000000035 ENSRNOT00000000040 3 1 1 83 14 1955552 1955571 CTGGTGAACACATCATTTGC 58 1955617 1956477 TATCTAAGTGGATGCGCAG 57 NA Rattus norvegicus 81 Nme5 ENSRNOG00000020118 ENSRNOT00000027244 2 1 1 81 18 27357953 27363666 ATCCTTACATCTGGCTTGC 58 27357890 27357911 TCTTCTGTTAGAGGGAAATGAG 57 NA Rattus norvegicus 81 Ccl21 ENSRNOG00000034290 ENSRNOT00000023951 3 1 1 61 5 58198210 58198230 CTCTAAGTCTGGGAAGAAAGG 58 58198086 58198187 AGTCTGTCTGTTCAGTCCC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100362150 ENSRNOG00000046854 ENSRNOT00000048400 1 1 1 60 4 102794191 102794211 GTTTCTTGGGTTCTTGTTGCT 60 102794343 102794362 CTGGGTCATCTGAATGTCAC 58 NA DesignNoJunction Rattus norvegicus 81 Ccdc94 ENSRNOG00000029606 ENSRNOT00000050775 2 1 1 166 16 22852230 22852248 CCAAAGAAGGCAAAGACGG 60 22851469 22852100 GACCTGTCACTGTCCTCAC 60 NA DesignNoJunction Rattus norvegicus 81 Hes3 ENSRNOG00000010893 ENSRNOT00000014536 3 1 1 84 5 169466245 169466340 TACTCCCACCAGATACGGA 59 169466179 169466197 AGTTCTGGAGGCTTCTCAC 59 NA Rattus norvegicus 81 Mcoln3 ENSRNOG00000015024 ENSRNOT00000020230 1 1 1 80 2 252005135 252007433 CGAAACCATTAAGCACTACCA 59 252007475 252007493 GGGAGGTCTTTGCATTCAG 59 NA Rattus norvegicus 81 Clec2e ENSRNOG00000052128 ENSRNOT00000077791 1 1 1 80 4 162855670 162855689 TCTGCTGCTATCGAGTAGTG 59 162853044 162855630 TTTCCTTTCTCACTGACAAAGC 60 NA Rattus norvegicus 81 RGD1561410 ENSRNOG00000023774 ENSRNOT00000051577 1 1 1 60 7 64293616 64293635 CAGAGAAGATTCCTCAGCAG 58 64293657 64293676 GCGTATTTGCAGGTAAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ly6g6c ENSRNOG00000000843 ENSRNOT00000001119 1 1 1 80 20 5059368 5059728 GTGTACCTTGGGAAGATGTG 58 5059771 5059789 TTCATTGAAGACCTCCCGA 58 NA Rattus norvegicus 81 Olr569 ENSRNOG00000046501 ENSRNOT00000007665 2 1 1 60 3 75772041 75772060 AATGGTAGACGCTTTGACAC 59 75772083 75772101 ATTGGACCGACAGAAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3564 ENSRNOG00000046739 ENSRNOT00000072413 3 1 1 60 19 54632033 54632052 GTCTTCTGTATCCCTCAAGC 58 54632075 54632093 CCCTCTTTGCATTTCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gas2l2 ENSRNOG00000047546 ENSRNOT00000071218 2 1 1 80 10 70643028 70644031 CATCTTCATCCGGATCCTC 57 70642966 70642986 TTATCCAGATAATGACCCAGC 57 NA Rattus norvegicus 81 LOC102555083 ENSRNOG00000050661 ENSRNOT00000074262 3 1 1 82 7 117975595 117978078 GGAAGTGATCACTCAGAATGC 59 117975533 117975552 GCTTCGTCTGAGATTAAGGG 58 NA Rattus norvegicus 81 Vom1r107 ENSRNOG00000042090 ENSRNOT00000065474 3 1 1 60 7 18068482 18068503 GATGCTTAAACACAGAGTCACC 60 18068521 18068542 CATAAGCCAGTTTAATGAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr192 ENSRNOG00000017366 ENSRNOT00000023325 3 1 1 80 1 169991111 170005092 TAAGGTACTGCGTCCATGG 59 169991049 169991069 TGATGTCATCACAGGAGAGTC 59 NA Rattus norvegicus 81 AABR07009572.1 ENSRNOG00000013038 ENSRNOT00000049719 3 1 1 60 2 103750930 103750948 CCAGGAGAGCACAATTGGA 60 103750972 103750990 CCTTGTGTCATCTACGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc1a6 ENSRNOG00000007509 ENSRNOT00000009931 2 1 1 80 7 13731978 13735306 ATCACCACAATCAGCATCAC 59 13731917 13731935 CACCATGGTAACCAGTCCT 59 NA Rattus norvegicus 81 Mypn ENSRNOG00000000383 ENSRNOT00000090083,ENSRNOT00000057872 2 2 2 80 20 27054536 27055183 AAGTGCACCATCTGTACCA 59 27055226 27055245 CGGATGTAATCGTCACTCAC 59 NA Rattus norvegicus 81 Pycrl ENSRNOG00000054724 ENSRNOT00000087328 2 1 1 86 7 116952150 116952415 TATGGAGGAGCTGTTACCC 58 116952082 116952101 ATAACCATAGCTCCCTCCTG 58 NA Rattus norvegicus 81 Ifi35 ENSRNOG00000020678 ENSRNOT00000028067 2 1 1 83 10 89365668 89365782 TGACCAACATCCAGGTGTC 60 89365829 89365847 CCTCACTCAGCCTAAGTCC 59 NA Rattus norvegicus 81 Dvl3 ENSRNOG00000001708 ENSRNOT00000002323 2 1 1 81 11 84059526 84059544 TTGGCTCCATCATGAAGGG 60 84059368 84059483 ATCTCATTTACCTGCAACAGC 59 NA Rattus norvegicus 81 Eif4a1 ENSRNOG00000030628 ENSRNOT00000049048 2 1 1 80 10 56275234 56275412 CGTCATCGAGAGTAACTGG 58 56275172 56275190 TAAATACCACGGAGGAGGG 58 NA Rattus norvegicus 81 Gxylt2 ENSRNOG00000005621 ENSRNOT00000007419 2 1 1 80 4 133244108 133247334 CCAGTTCAAGAACAGCCTG 59 133247373 133247396 GCATTCTTATACTTCTGGTACAGC 60 NA Rattus norvegicus 81 Nrbp2 ENSRNOG00000029535 ENSRNOT00000051294,ENSRNOT00000078846 2 2 2 81 7 117150460 117150546 CCCATGAGGAGAAGATCCA 58 117150397 117150416 CAATACTTGTGCAGCTTGAC 58 NA Rattus norvegicus 81 LOC100911247 ENSRNOG00000025487 ENSRNOT00000038294 1 1 1 60 7 60987595 60987613 AGACCTTCTACCTCACCCT 59 60987553 60987571 ACTTGTGAGAAACGATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adm ENSRNOG00000027030 ENSRNOT00000036718 3 1 1 87 1 175445712 175445730 TGATGTTATTGGGTTCGCT 57 175445779 175445957 CACTTATTCCACTTCTTTCGG 57 NA Rattus norvegicus 81 Zfyve16 ENSRNOG00000013055 ENSRNOT00000089325,ENSRNOT00000017705 1 2 2 80 2 22084639 22084660 ATTAGTCTTCTACCAGATGACG 57 22083267 22084598 TACTACAGGCACTGATCCA 57 NA Rattus norvegicus 81 Skint1 ENSRNOG00000043194 ENSRNOT00000087012,ENSRNOT00000064863 2 2 2 80 5 131920215 131933400 AATACAGCAAACTCAGAGCT 57 131933442 131933461 GAGTTCTAAGTTTCCACCCA 57 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000089326 3 1 18 65 1 43508705 43508723 AGTCCGTCAGAACACTAGG 59 43508750 43518467 TTCTGGTGGTTAGTTCGATCC 60 NA DesignNoJunction Rattus norvegicus 81 Col25a1 ENSRNOG00000050706 ENSRNOT00000074816,ENSRNOT00000071463,ENSRNOT00000075728 2 3 3 85 2 235682173 235682801 GGCCTTCTATCATAGGCCC 59 235684906 235684924 CTTTGGTCCAGGAAGTCCA 59 NA Rattus norvegicus 81 Trappc6b ENSRNOG00000004103 ENSRNOT00000005568 3 1 1 82 6 80147647 80147668 CTTCAGGACAACAAATTTCGAC 59 80143555 80147605 AACGCTAGATACTTGGATGC 58 NA Rattus norvegicus 81 AABR07065782.1 ENSRNOG00000033376 ENSRNOT00000064361 1 1 1 60 6 141198538 141198556 CTGTTGGAATCTGGAGGAG 57 141198496 141198514 CTGCACAGGAAAGTCTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdc42ep1 ENSRNOG00000008517 ENSRNOT00000011270 2 1 1 152 7 120068068 120068086 AGCTTTGATAGCACTCCGG 60 120069569 120069587 TCGGTCTTGAGAATGGTCC 59 NA DesignNoJunction Rattus norvegicus 81 Tctn1 ENSRNOG00000028523 ENSRNOT00000030604 1 1 1 80 12 39791091 39791109 CTCCTAAACTGCTGCACCT 60 39791153 39791297 ATCCTCATTCGTCACCACC 60 NA Rattus norvegicus 81 Tmem138 ENSRNOG00000020693 ENSRNOT00000028092 3 1 1 80 1 226628530 226628548 GACCTGTTCGTCAATTCCT 58 226628237 226628489 AATATCCTGGATGATGAACAGC 58 NA Rattus norvegicus 81 Alox12b ENSRNOG00000022210 ENSRNOT00000039535 1 1 1 80 10 55745898 55745916 TACCACTTCCCAGCTTACC 59 55745959 55749554 ATCTGCTGTTGTCTTTCCTG 58 NA Rattus norvegicus 81 Glrx2 ENSRNOG00000003385 ENSRNOT00000060062 1 1 1 80 13 60536565 60536583 GTGGAGTTGGATATGGTGG 58 60536626 60537790 CCTGGGAACAGTTCTTTCTC 58 NA Rattus norvegicus 81 Slc25a48 ENSRNOG00000012040 ENSRNOT00000016138 1 1 1 80 17 8596527 8603489 TCTGGACACAGTCAAGACTC 59 8596466 8596484 CTCTTGTACACCATGCGGA 60 NA Rattus norvegicus 81 Duxbl1 ENSRNOG00000025408 ENSRNOT00000088284 2 1 2 110 16 3762776 3764793 TCACACCCAGAAAGCTCTC 59 3762095 3762115 GAATAATCCTCCTTCTCCGGG 60 NA InUTR Rattus norvegicus 81 Duxbl1 ENSRNOG00000025408 ENSRNOT00000052224 2 1 2 90 16 3759679 3761997 CTCTGAGTCTCAAATAATGACTTGG 60 3759613 3759632 CTCTTGGCTTTCTTCAGAGC 59 NA Rattus norvegicus 81 Itgb7 ENSRNOG00000012208 ENSRNOT00000016642 1 1 1 80 7 143827525 143827769 CGCAGAGTTTGACTATCCCT 60 143827464 143827484 GTGACAGCAAAGATAGGTTGG 59 NA Rattus norvegicus 81 LOC100910051 ENSRNOG00000047332 ENSRNOT00000071649 2 1 1 60 2 115207437 115207456 AACACCCATGTACTTCTTCC 58 115207479 115207497 GACAGTAGATTGGCAGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ly6g6d ENSRNOG00000000844 ENSRNOT00000001120 1 1 1 100 20 5064201 5064219 ATCACCTGTGGTGAAGGTG 60 5062036 5062054 TAGTGATGGCTCAAGGTCG 59 NA DesignNoJunction Rattus norvegicus 81 Crb1 ENSRNOG00000010903 ENSRNOT00000032122 2 1 1 80 13 56314152 56317176 AGGGTTTGAATGTATCGCCA 60 56314091 56314114 CTGGTAATATTCCCATTGCTTCTG 60 NA Rattus norvegicus 81 Nfil3 ENSRNOG00000011668 ENSRNOT00000015525 3 1 1 180 17 12261220 12274492 CTGGCAACCTTGGATAACC 59 12274636 12274654 CAGCTGCATCAGAAAGGAC 59 NA InUTR Rattus norvegicus 81 LOC100363136 ENSRNOG00000001570 ENSRNOT00000002137 2 1 1 60 11 28672597 28672615 GAGCTTCTACACTTCAGGG 57 28672555 28672574 ACGGACTCCATAACTCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 ST7 ENSRNOG00000056243 ENSRNOT00000080880 1 1 1 80 4 45001312 45001330 TTCTTCCTCGTGCTCTTCC 59 45001374 45120590 AAACATGCTCACTGTGCTC 59 NA Rattus norvegicus 81 Rasd2 ENSRNOG00000014761 ENSRNOT00000020017 2 1 1 86 19 14658780 14658798 GTACCAGCTGGACATCCTG 60 14658847 14661588 ATGAAGACGTCTCCTGTGAG 59 NA Rattus norvegicus 81 LOC100363384 ENSRNOG00000001566 ENSRNOT00000002131 3 1 1 60 11 28870064 28870082 GCTATGGTACCAGCTATGG 57 28870022 28870040 AAAGAGGGACGGAAGTAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kdm3b ENSRNOG00000050200 ENSRNOT00000070930 2 1 1 80 18 27595333 27597222 TGTCTATAAGTGAGACTGGTGAG 59 27597259 27597280 GTGGTGTCGAATTATCCATCAG 59 NA Rattus norvegicus 81 Bod1l1 ENSRNOG00000050437 ENSRNOT00000070998 3 1 1 80 14 73762128 73762147 AGTGCATAGCCAAAGTACTG 58 73762190 73762288 ACACTTATTTCCTGGGCTC 57 NA Rattus norvegicus 81 AABR07009931.1 ENSRNOG00000011640 ENSRNOT00000015479 2 1 1 60 2 117666628 117666648 AGGTAATGAGTGTGCTTATGG 58 117666588 117666606 GGCATCTGGCATTTCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ubp1 ENSRNOG00000009729 ENSRNOT00000013050 2 1 1 80 8 122229208 122229226 TGTGAATAACAGCCCTTCC 57 122229270 122231139 GAAGAATTGCTGTCTGGGA 58 NA Rattus norvegicus 81 Rgs2 ENSRNOG00000003687 ENSRNOT00000005156 1 1 1 83 13 60846999 60847017 TCACCACAGAAACTGTCCT 59 60846690 60846957 GTCTATGTTTATCTCTTTGGGAGC 59 NA Rattus norvegicus 81 Rbm33 ENSRNOG00000006718 ENSRNOT00000033377 2 1 1 80 4 606550 606568 TGACCAGTTTGACAAGCCT 60 606611 611548 TCTTCAAGTTCACTGTCCCA 59 NA Rattus norvegicus 81 Rpl27a ENSRNOG00000014214 ENSRNOT00000019247 1 1 1 101 1 174134114 174134132 ATTATGGACGTTGGTCAGC 58 174134196 174135119 ACTTTGTAGTAGCCTGATCG 57 NA Rattus norvegicus 81 Cyp4f6 ENSRNOG00000048450 ENSRNOT00000060210 2 1 1 80 7 14602678 14603656 TGAACATCATGCACATCCA 57 14603697 14603718 GATGGATATCTCGGAAAGTCTG 58 NA Rattus norvegicus 81 LOC100912418 ENSRNOG00000048642 ENSRNOT00000074198 3 1 1 60 4 170117285 170117303 GCAAAGGTCTGGGTAAAGG 59 170117243 170117263 TGGATGTTATCTCGGAGAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pqbp1 ENSRNOG00000007766 ENSRNOT00000010536,ENSRNOT00000077268 2 2 2 80 X 15451692 15451884 TTTGACCCTTCTTGTGGAC 58 15451928 15451946 GTTGGGATCATGTGGTGAG 58 NA Rattus norvegicus 81 Fkbp1b ENSRNOG00000047143 ENSRNOT00000071784 1 1 1 80 6 29981938 29985519 CTACACAGGGATGCTCCAG 60 29985560 29985581 TTGCCAATTCTGAACTTGAAGG 60 NA Rattus norvegicus 81 Rbpj ENSRNOG00000007797 ENSRNOT00000010277 2 1 1 87 5 4878667 4878685 GACTTGTGCATTGCCTCAG 60 4878734 4878756 CTCCTTCTACCAGGTATCTGG 59 NA Rattus norvegicus 81 Ifna2 ENSRNOG00000058365 ENSRNOT00000045433 1 1 1 60 5 107416598 107416617 CCTCACACTCATAACCTCAG 58 107416557 107416575 GTCTCCTCATTTGTGCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102553002 ENSRNOG00000031459 ENSRNOT00000006118 3 1 1 87 1 65701531 65701549 CTGCAGTTATCTCCCAGCT 59 65694794 65701480 AGAATCCAACCTGGATGGC 60 NA Rattus norvegicus 81 Lcorl ENSRNOG00000003787 ENSRNOT00000072746 2 1 1 88 14 69818193 69819139 GCAGTCAGTGATTGTATGCC 59 69819190 69819208 TTATCAGTGTGGGACTGGC 59 NA Rattus norvegicus 81 Cnot4 ENSRNOG00000010795 ENSRNOT00000040969 2 1 1 80 4 62591369 62592778 CTTCACATCAGAAACAATCCC 57 62591309 62591328 TCTGGCTGTTTAGAAGAACC 58 NA Rattus norvegicus 81 Mapkapk5 ENSRNOG00000001345 ENSRNOT00000001817,ENSRNOT00000065314 1 2 2 80 12 40520679 40520699 GTTTGCTAAAGTTGACCAAGG 58 40520741 40521525 TGTGCTTCCAGTACCTGAG 59 NA Rattus norvegicus 81 Mapkapk5 ENSRNOG00000001345 ENSRNOT00000001817,ENSRNOT00000065314 2 2 2 80 12 40520681 40520701 TTGCTAAAGTTGACCAAGGTG 59 40520743 40521527 TCTGTGCTTCCAGTACCTG 59 NA Rattus norvegicus 81 Klk11 ENSRNOG00000018742 ENSRNOT00000025055 1 1 1 81 1 99712269 99713918 AATTATCTACAGAACCCAGGGA 59 99713960 99713978 GCAAGTGCAATGAATCGGA 59 NA Rattus norvegicus 81 Slc2a13 ENSRNOG00000015741 ENSRNOT00000021153 2 1 1 80 7 132681564 132681584 CATTGACGAGGAGTATGACAG 58 132581215 132681523 CAGATTATAGGTCCAGCTGC 58 NA Rattus norvegicus 81 Cyp4b1 ENSRNOG00000055078 ENSRNOT00000013321 3 1 1 80 5 134514946 134514965 TCATTTACTGGCTCACTCCA 59 134514753 134514905 TGATGACCTCATCTGTATGGT 58 NA Rattus norvegicus 81 Dgcr6 ENSRNOG00000001880 ENSRNOT00000002574 2 1 1 87 11 87080937 87080955 CTTCTGGAGATCCAGCACC 60 87078096 87080887 GAGTCTGTCTGAGCACTCTG 60 NA Rattus norvegicus 81 Rps2-ps6 ENSRNOG00000022934 ENSRNOT00000002656,ENSRNOT00000007876 3 2 2 60 9 17212365 17212384 TGCCCATTAAGGAGTCTGAG 59 17212324 17212345 ACTTCATCCTTTAGAGATGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Drgx ENSRNOG00000020045 ENSRNOT00000027186 2 1 1 80 16 8829547 8829566 TACCCAGATGTCTTCACCAG 59 8829609 8832367 GTTCTGGAACCAAACCTGC 59 NA Rattus norvegicus 81 Kif22 ENSRNOG00000020281 ENSRNOT00000027525 2 1 1 80 1 198466963 198467056 TTGGTCAAGGTAGAACAGC 57 198466901 198466920 ACCAGCCAAATCAATAAGGT 58 NA Rattus norvegicus 81 Fam71b ENSRNOG00000021425 ENSRNOT00000031580 1 1 1 80 10 31509161 31509181 TGAACAGTTGCATCAGTAACC 59 31509222 31510349 GGATTTCTGAGACGAGTGTG 58 NA Rattus norvegicus 81 U8 ENSRNOG00000056054 ENSRNOT00000083120 1 1 1 60 10 55656480 55656499 CTGCTGATTAGCATTTCCGT 59 55656520 55656540 ATCAGATAGGAGCAATCAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ldlrad4 ENSRNOG00000016879 ENSRNOT00000022717,ENSRNOT00000083414 2 2 2 121 18 64015931 64015949 CACGTTCCTTCATCAACCG 59 64033404 64040276 ACACATGATCTCTGAAGCCC 60 NA Rattus norvegicus 81 RGD1307916 ENSRNOG00000042494 ENSRNOT00000064853 1 1 1 95 4 156944580 156944598 CAGATGCCGATGTTCTCTG 58 156824501 156944521 TGAAGGAGACTTCTTGCCC 59 NA Rattus norvegicus 81 Slc28a3 ENSRNOG00000018853 ENSRNOT00000025745 3 1 1 80 17 6489705 6492118 CCGACCAGAGTTTACTGGA 59 6492158 6492180 CCTAGTCCTTAGAATTAAGAGCC 58 NA Rattus norvegicus 81 RGD1566099 ENSRNOG00000043374 ENSRNOT00000066601 3 1 1 80 13 55883300 55883318 TGGCTATGTGGTTCTCACC 59 55881719 55883257 CCATATGGACAGTGTCTGCA 60 NA Rattus norvegicus 81 Figla ENSRNOG00000015877 ENSRNOT00000021272 2 1 1 81 4 117681078 117681097 TATCCTTAAAGGTGCCACGG 60 117681141 117683204 AGGGCCTTGTTTCTCTGAG 59 NA Rattus norvegicus 81 Thap7 ENSRNOG00000037967 ENSRNOT00000057751 2 1 1 102 11 87400556 87401711 GGGAATCAGTGGGTATCAC 57 87400472 87400490 ATAACCATGCACCTTGGTC 58 NA Rattus norvegicus 81 Naa50 ENSRNOG00000039017 ENSRNOT00000068345 3 1 1 80 11 61512198 61513915 ACATCTATCTGCATGTCCAG 57 61512137 61512158 TAGTCTCGATAATCTCAAAGCC 58 NA Rattus norvegicus 81 Luc7l ENSRNOG00000020488 ENSRNOT00000060078 3 1 1 81 10 15555423 15561808 AAGAAGCAGAGGAAGAATACAG 58 15561850 15561868 GAACAAACCTCGCAAACAC 58 NA Rattus norvegicus 81 Nup210 ENSRNOG00000005390 ENSRNOT00000008888 3 1 1 80 4 122726953 122729456 GCAGAAGACATCACTACAGG 58 122726892 122726912 GGTAGAGACAATCTGAATGCC 59 NA Rattus norvegicus 81 Rpl6 ENSRNOG00000025936 ENSRNOT00000034951 1 1 1 81 12 40880915 40880933 CAGGTATTCCCGATCTGCT 59 40880757 40880872 CTTCTCAACCTTTGTCTTGGC 60 NA Rattus norvegicus 81 AABR07021086.1 ENSRNOG00000022174 ENSRNOT00000032908 1 1 1 80 13 56262895 56262914 GTATCCATTGTGGATCTGGC 59 56262957 56262989 TTTAGTAGGCCCTACCACC 58 NA Rattus norvegicus 81 Tmem109 ENSRNOG00000028017 ENSRNOT00000038807 1 1 1 86 1 226927092 226927110 TCATCAGCCATCTCTGTGG 59 226926585 226927042 GAGTTGTTCACCATCCAGC 59 NA Rattus norvegicus 81 Mt1 ENSRNOG00000025764 ENSRNOT00000038212 1 1 1 80 19 11302283 11302301 GCAAGAAGCAGGTCTTCTG 59 11302220 11302245 GAAAGAAAGAAGAGGAAGATGTCAG 60 NA Rattus norvegicus 81 Trim68 ENSRNOG00000047229 ENSRNOT00000075222 1 1 1 80 1 167837165 167837639 ATGATGCAGGGTATTCAGGA 59 167836584 167836602 CAGCTCCAAGGAGATTGGT 59 NA Rattus norvegicus 81 Ms4a2 ENSRNOG00000020993 ENSRNOT00000028491 2 1 1 80 1 227960129 227960479 TCTTTCATCACAGAACTGGTG 58 227960069 227960088 ATAGATAATGAGCAGCACGG 58 NA Rattus norvegicus 81 Ptprn2 ENSRNOG00000005003 ENSRNOT00000006942 2 1 1 80 6 144740837 144740856 TGATCTTCAAAGTGAGTGCC 58 144740897 144878102 GCTCATCTTTGTTGTCAACTG 58 NA Rattus norvegicus 81 Tmem116 ENSRNOG00000027480 ENSRNOT00000067503 2 1 1 80 12 40586376 40588933 AGTCTGCAGAGGTAAAGTCAC 60 40586316 40586335 CAAGTGCCTTTATGAGCCAG 59 NA Rattus norvegicus 81 AABR07046635.1 ENSRNOG00000047780 ENSRNOT00000033772 3 1 1 105 5 230929 230947 TTCACTCAGGAAGAGTGGG 59 231012 231232 CCCAATTGTAACCTATAGCAGTG 59 NA Rattus norvegicus 81 Tcte1 ENSRNOG00000019961 ENSRNOT00000027031 3 1 1 80 9 17855638 17855657 CTCTTTCTCTTCACCTACCG 58 17851207 17855598 CAGTCTGAAGATCTTGAGAGTG 58 NA Rattus norvegicus 81 Ndufa8 ENSRNOG00000005668 ENSRNOT00000084069,ENSRNOT00000044885 1 2 2 83 3 15366353 15366372 GGCAAAGTTTGACGAATGTG 59 15363190 15366309 TTCACTTTGGTGACCTTAGAC 58 NA Rattus norvegicus 81 Tmub1 ENSRNOG00000013383 ENSRNOT00000088357,ENSRNOT00000061992 2 2 2 264 4 7259226 7259517 AAAGAACCCAGTTTCCAGG 58 7259745 7259763 TACTGGATCTGGCAGTACC 58 NA DesignNoJunction Rattus norvegicus 81 Rgl3 ENSRNOG00000013027 ENSRNOT00000091027,ENSRNOT00000017493 1 2 2 84 8 22992551 22992569 TTTCAGGAAACTGTCGCAG 58 22989038 22992503 CTCAGTGGTCTCTTCCTGG 59 NA Rattus norvegicus 81 Rgl3 ENSRNOG00000013027 ENSRNOT00000091027,ENSRNOT00000017493 2 2 2 85 8 22992551 22992569 TTTCAGGAAACTGTCGCAG 58 22989037 22992502 CCTCAGTGGTCTCTTCCTG 59 NA Rattus norvegicus 81 Lrrc8d ENSRNOG00000002121 ENSRNOT00000002888 1 1 1 96 14 5089015 5101011 GATCATGGGAATGTTTACCCT 58 5088939 5088957 ATCCATAAACACGTCCCAC 58 NA InUTR Rattus norvegicus 81 Nckap5l ENSRNOG00000056678 ENSRNOT00000086276,ENSRNOT00000081434 1 2 2 83 7 141092658 141093220 ACTGAACCAGAAGGACCTG 59 141092593 141092611 CTGAGCATCTGATTCTGCC 58 NA Rattus norvegicus 81 RGD1311703 ENSRNOG00000053659 ENSRNOT00000090773 2 1 1 81 1 185563538 185568983 ACGACGATCTTGGATCTAGC 60 185563476 185563498 CCCATAAGTCTCAAGAACTTCTG 59 NA Rattus norvegicus 81 AABR07071393.1 ENSRNOG00000046440 ENSRNOT00000072842 2 1 1 60 8 113704437 113704455 GATCTGGGAGCATCTGGAG 59 113704395 113704415 CTGGTCAACTTCAAAGCAGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Porf1 ENSRNOG00000003891 ENSRNOT00000005162 2 1 1 60 6 114476650 114476668 GGGATTTGCTGATGTACCA 58 114476608 114476627 CCAGGTTGATCCTCTTACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crebbp ENSRNOG00000005330 ENSRNOT00000007079 3 1 1 80 10 11714730 11714750 CTTTGTCTATACCTGCAACGA 58 11714790 11716148 CAAAGGTCATAGTCCTCACAC 59 NA Rattus norvegicus 81 Cyp27b1 ENSRNOG00000046214 ENSRNOT00000072176,ENSRNOT00000084933 1 2 2 80 7 70337182 70337200 AAAGGTGTCTGTCCAGTCC 59 70337243 70337512 GAGAGCGTATTGGATACCGT 60 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000026637,ENSRNOT00000026559,ENSRNOT00000042790,ENSRNOT00000044163,ENSRNOT00000083811 2 5 6 80 9 17347358 17348155 ACTATGCAGATCATGCGGA 59 17348199 17348217 TTCACATCTGCTATGCTGC 58 NA Rattus norvegicus 81 Kcnj3 ENSRNOG00000005369 ENSRNOT00000007335 1 1 1 91 3 41020579 41020597 ACTCACTCTCATGTTCCGG 59 41020652 41029577 GTGTCTGCCGAGATTTGAG 59 NA Rattus norvegicus 81 Atp6ap1 ENSRNOG00000054352 ENSRNOT00000081914 1 1 1 80 X 156414534 156414554 GCTTTCTACCTACTTAGACCC 57 156412471 156414493 TCAATGCTTAGCTTGTCCTG 58 NA Rattus norvegicus 81 Iqca1 ENSRNOG00000019592 ENSRNOT00000026491,ENSRNOT00000056724 1 2 2 80 9 97274495 97284143 GTATTCCTGGGTATGAAACCAC 59 97274436 97274457 CAGATTTGACACTTGTTCTGAC 58 NA Rattus norvegicus 81 Dnm1l ENSRNOG00000001813 ENSRNOT00000002482,ENSRNOT00000002477,ENSRNOT00000002478 2 3 3 80 11 88870130 88870340 TTAGAAATGCTACTGGCCC 57 88870383 88870402 GCTTAATCTGACGTTTGACC 57 NA Rattus norvegicus 81 Cd2 ENSRNOG00000015821 ENSRNOT00000021268 2 1 1 80 2 203674507 203679562 GGACTTGAGGATTCTAGAGATGG 60 203674449 203674467 AAGACTTCACAGGTCAGGG 59 NA Rattus norvegicus 81 LOC100912195 ENSRNOG00000033844 ENSRNOT00000048996 2 1 1 110 1 116566378 116566715 ATAGGCCCAGGAGAAATGG 59 116566286 116566304 TTTGATGGTATCTTGCGGC 59 NA InUTR Rattus norvegicus 81 LOC689600 ENSRNOG00000057651 ENSRNOT00000084905 2 1 1 96 X 153456904 153456922 CAGGAATTTCACACGGCTG 60 153456676 153456848 CTGGTTTCTTAGTTACCTTGACC 59 NA Rattus norvegicus 81 Zscan18 ENSRNOG00000026861 ENSRNOT00000036880 3 1 1 80 1 65852200 65852219 CCTGAGAATTGCAAGAAAGC 58 65852261 65852820 GGAACACAACATCATTCCTG 57 NA Rattus norvegicus 81 Fam171a2 ENSRNOG00000021041 ENSRNOT00000028563 2 1 1 87 10 90385255 90385788 ATCTACTACTGCCGACGAC 59 90385186 90385204 GATCTCGTTTGTTGTCCGA 58 NA Rattus norvegicus 81 Styk1 ENSRNOG00000010347 ENSRNOT00000013833 1 1 1 80 4 165530490 165530509 CCAGCATCCTACAGTATCTG 57 165529485 165530448 TCATGATGTTGTACATGGCA 58 NA Rattus norvegicus 81 Gripap1 ENSRNOG00000009071 ENSRNOT00000012646 1 1 1 80 X 15534120 15534138 GCTTCGAGAACTGCATGAG 59 15533920 15534076 CTTGTTCGAGCCTTCTCCT 59 NA Rattus norvegicus 81 Lrrc75a ENSRNOG00000027286 ENSRNOT00000030379 1 1 1 69 10 48933952 48933970 TTCACAGTGGAGGAGACAC 59 48930920 48930938 AGAAAGGAGGGCCTTAAGG 59 NA DesignNoJunction Rattus norvegicus 81 Bcl7c ENSRNOG00000018916 ENSRNOT00000025618 2 1 1 123 1 199157655 199157772 CTGGATCTCAATGATGAGAACAG 59 199157554 199157572 GAGGTCCAGTTGGTGATCC 60 NA Rattus norvegicus 81 Ciapin1 ENSRNOG00000016234 ENSRNOT00000021769 3 1 1 80 19 10605825 10605843 TTGTGGATCCTGCTACTGC 60 10605885 10607537 CTGAGTCAATGAGATCCATGC 59 NA Rattus norvegicus 81 Olr990 ENSRNOG00000050851 ENSRNOT00000043749 2 1 1 64 7 5655690 5657533 GATGACCAACAACTGCAGG 59 5657559 5657579 GTTATGCTCAGTGAGTAGGTG 58 NA DesignNoJunction Rattus norvegicus 81 Tfe3 ENSRNOG00000009605 ENSRNOT00000012829 1 1 1 80 X 15583041 15583586 GGTACTCAAGGTTCAAACCC 59 15582980 15582998 TACTGTTTCACCTGTTGCC 58 NA Rattus norvegicus 81 Hoxc13 ENSRNOG00000028679 ENSRNOT00000033300 2 1 1 81 7 144532478 144532496 ACAGTCAGGTGTACTGCTC 59 144532541 144537725 TGTAGAGGAACCACGTCTG 59 NA Rattus norvegicus 81 LOC680039 ENSRNOG00000027623 ENSRNOT00000029191 1 1 1 80 14 79313078 79313096 TTGCAAAGCAGGTTGTCAG 59 79313137 79318386 TTCAGTACAGGAAACTCTTCCA 59 NA Rattus norvegicus 81 Fam216a ENSRNOG00000031731 ENSRNOT00000050398 2 1 1 80 12 39687177 39688493 TTGCTACCAGTTTCTTCTAAGG 58 39688531 39688552 CATGCACTCATTCAGTAGATCC 59 NA Rattus norvegicus 81 Zfp317 ENSRNOG00000006684 ENSRNOT00000034254,ENSRNOT00000078593 2 2 2 80 8 19888838 19888858 CACCTAGAGCAAGAAGAGGAG 60 19888897 19890698 AGATGTAGTTTCCCAATCTGGA 59 NA Rattus norvegicus 81 Ccl22 ENSRNOG00000016535 ENSRNOT00000022167 1 1 1 60 19 10681072 10681090 TCTCGTCCTTCTTGCTGTG 60 10679886 10679904 CACATTGGCACCATAGGGA 60 NA DesignNoJunction Rattus norvegicus 81 Ddx54 ENSRNOG00000001377 ENSRNOT00000001859 1 1 1 80 12 41477765 41477889 AATGAACAGCTCAAGACTTCC 59 41477705 41477725 GACATTCTGTAGCAGGTAGAG 58 NA Rattus norvegicus 81 Mybl1 ENSRNOG00000021669 ENSRNOT00000067977 3 1 1 80 5 9303060 9304177 CTTATTGAATCGGATCCTGTAGC 59 9304217 9304235 AGACTTGACAGGAGAAGCA 58 NA Rattus norvegicus 81 Rpl10l ENSRNOG00000032720 ENSRNOT00000047597 1 1 1 60 6 88232146 88232164 AGATCCGCATCTTTGACCT 59 88232104 88232122 CCACAGAGTGGAAACTCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspan5 ENSRNOG00000015913 ENSRNOT00000021381 1 1 1 84 2 244213858 244216064 AGGAATACTGGCAGTGCTG 60 244216112 244216130 CTTGCATTGGAGTCTGTGC 60 NA Rattus norvegicus 81 Lrrfip2 ENSRNOG00000021047 ENSRNOT00000056060 3 1 1 80 8 119481004 119482105 ACCTTGGAACAAAGTATCAGC 59 119482145 119482165 TTCAATCTTCTCAGCGTTCTC 59 NA Rattus norvegicus 81 Dlk2 ENSRNOG00000018949 ENSRNOT00000025638 3 1 1 95 9 17062804 17063358 GTTCTGTGACAAAGATGAGCA 59 17062729 17062747 ACACAGTGGTACTCACCAC 59 NA Rattus norvegicus 81 Adra1d ENSRNOG00000021256 ENSRNOT00000028877 2 1 1 196 3 124144127 124144145 GAACACAGAGTAGCAAGGG 58 124130887 124130905 CTTGAAGACACCCTCTGAC 58 NA DesignNoJunction Rattus norvegicus 81 Tubb2b ENSRNOG00000017445 ENSRNOT00000083705,ENSRNOT00000023582 2 2 2 85 17 31442646 31442665 GGAAGTTACCATGGAGACAG 58 31442710 31442965 CGAGGCACATATTTATTACCAG 57 NA Rattus norvegicus 81 Itgb1 ENSRNOG00000010966 ENSRNOT00000014785 3 1 1 80 19 61716888 61716907 ACTGCTGGTTCTATTTCACC 58 61716950 61718273 TAGGACAGTCTGGAGTCTC 57 NA Rattus norvegicus 81 Rn60_1_1348.1 ENSRNOG00000051253 ENSRNOT00000075872 3 1 1 86 1 133713445 133714454 AATCTAAAGGCTACAACAGCTG 59 133713380 133713398 TGGTAGGCACAGTGATGTG 60 NA Rattus norvegicus 81 Ptger3 ENSRNOG00000010325 ENSRNOT00000014126,ENSRNOT00000014034 3 2 2 81 2 263896109 263940271 CCGCTATTGATAATGATGCTG 57 263940314 263940332 CCTTCTCCTTTCCCATCTG 57 NA Rattus norvegicus 81 Sh2b3 ENSRNOG00000028198 ENSRNOT00000030583 2 1 1 130 12 40262085 40262181 CTTTGTGTTGAAGGTGCAG 58 40262350 40262368 GTAACTCTGTGTCCAGGTG 58 NA Rattus norvegicus 81 Olr1012 ENSRNOG00000054207 ENSRNOT00000074567 2 1 1 60 7 7069466 7069486 TCATGTATGCTAACCCTTCTG 58 7069506 7069526 AGAATAGCTACTCCTTTGGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir6324 ENSRNOG00000046478 ENSRNOT00000075626 2 1 1 60 11 36383573 36383592 ATCCAACTGAGTCAGTAGGC 59 36383532 36383551 GTCAGTGAAATTGCTCAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nexn ENSRNOG00000012512 ENSRNOT00000083344,ENSRNOT00000016967,ENSRNOT00000066780 2 3 3 80 2 257472569 257472587 CATGCTCGCTTCTGATGAG 59 257472265 257472526 CCTTTAACTGTCCCTGTGAG 58 NA Rattus norvegicus 81 Arhgef25 ENSRNOG00000005034 ENSRNOT00000006800 3 1 1 80 7 70472735 70472754 GGAAACTTTGTCTCAAGCTC 57 70472514 70472694 TCACTCAGGACAAACATACTC 58 NA Rattus norvegicus 81 Sav1 ENSRNOG00000005264 ENSRNOT00000007314 3 1 1 95 6 92377380 92380193 CCCTGTGAAATACGACCAC 58 92377303 92377321 TCCTTCATGAAGAGCAGCT 59 NA Rattus norvegicus 81 Tesk1 ENSRNOG00000053729 ENSRNOT00000080909 3 1 1 80 5 58940938 58941078 CCGTACTGAGGACTTTGGT 59 58941122 58941140 AGAAGCAGGAAAGGTAGCG 60 NA Rattus norvegicus 81 Gpd1 ENSRNOG00000056457 ENSRNOT00000087662 1 1 1 81 7 141373340 141373358 ATGCAAACACCCAACTTCC 59 141373401 141374714 CCACTATATTCTTCAAGGCCC 58 NA Rattus norvegicus 81 AABR07033162.1 ENSRNOG00000030674 ENSRNOT00000052022 3 1 1 80 11 8268905 8268924 CAGTACCAGAAGAGGGTCAC 60 8268969 8268987 CTGTTCTTTCCTGCCATCC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100362040 ENSRNOG00000030738 ENSRNOT00000042161 1 1 1 80 9 100699057 100699384 ATACAGAAGTCAGTAAAGGCTAGAG 60 100699001 100699021 TCTACCTACTCCCACTCTCAG 60 NA Rattus norvegicus 81 LOC100362040 ENSRNOG00000030738 ENSRNOT00000042161 3 1 1 80 9 100674279 100675068 AAAGATCCTAGAGGTAACCTTGG 59 100674221 100674239 GAATGGGCTGGGAATTGAG 59 NA Rattus norvegicus 81 Kdm2b ENSRNOG00000025702 ENSRNOT00000044071 1 1 1 80 12 39153511 39153529 AGTCCATCAACCTGCTCAC 60 39153571 39160710 CCTTATTGCAGTCCGATAGGT 60 NA Rattus norvegicus 81 Abhd16a ENSRNOG00000056637 ENSRNOT00000086950,ENSRNOT00000077082 3 2 3 99 20 5080207 5080225 CAAGATCTACCGGGAGAGG 59 5080288 5081178 ATACGAATCCCAGGAGCTG 59 NA Rattus norvegicus 81 Cep63 ENSRNOG00000008410 ENSRNOT00000056531,ENSRNOT00000031313,ENSRNOT00000084413 1 3 3 80 8 111078410 111079530 ACTCAGTAGAAAGGTCTCTGG 59 111078350 111078369 GCACATTATCCAAGACTCCC 59 NA Rattus norvegicus 81 Ssr4 ENSRNOG00000053172 ENSRNOT00000083557 2 1 1 80 X 156997792 156997811 AGATGCCGTCATTTCTACAG 58 156996749 156997749 AGAGCCATATTCTGGACCC 59 NA Rattus norvegicus 81 Tada3 ENSRNOG00000008597 ENSRNOT00000011827 1 1 1 80 4 145322956 145322976 CATGTCTGGGAAAGAATCAGG 59 145322399 145322915 GTATGTGGCACACTGAAAGG 59 NA Rattus norvegicus 81 C1galt1 ENSRNOG00000007804 ENSRNOT00000078680,ENSRNOT00000010375 2 2 2 83 4 33929642 33929660 ACATTCAGACGACAGTGGA 59 33929704 33933646 GTGTTCTCATCTTTATGTTGGC 58 NA Rattus norvegicus 81 AABR07036374.1 ENSRNOG00000001347 ENSRNOT00000001818 1 1 1 128 12 40535054 40535072 AGGATGTCCTCCTGTTTGC 60 40535162 40535216 TCTTACTGATCGTCTCATGCA 59 NA Rattus norvegicus 81 Heatr5b ENSRNOG00000025926 ENSRNOT00000035905 3 1 1 80 6 1352515 1352534 TCCTAGTCAACTGTACCGAG 58 1345859 1352472 ACCACATATACCTCTGCCC 59 NA Rattus norvegicus 81 Efna5 ENSRNOG00000034177 ENSRNOT00000045096 3 1 1 80 9 110062704 110062725 ACTATAGGTGTTCATGATCGTG 58 110057260 110062663 ATGTACGGTGTCATCTGCT 59 NA Rattus norvegicus 81 Zfp951 ENSRNOG00000043048 ENSRNOT00000044065 3 1 1 81 14 6284039 6284058 CTGGATCCTTCCCAGAAGAG 59 6283780 6283996 CCCAGTAAGAGCCTATAGCA 58 NA Rattus norvegicus 81 Tm2d3 ENSRNOG00000011290 ENSRNOT00000015287 2 1 1 80 1 126588328 126588346 TGCCTCCTGTACTTATGGG 59 126588390 126591517 TGGAGGTCTTGATCGACAC 59 NA Rattus norvegicus 81 Ppp2r5e ENSRNOG00000005045 ENSRNOT00000006755,ENSRNOT00000077715 1 2 2 80 6 98462210 98462231 TAGTGACAGCAATGAATTCGAC 59 98454369 98462172 TCATATACAAGCTGTAGGTGGG 60 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000083500,ENSRNOT00000020775,ENSRNOT00000085762 3 3 7 80 19 15166510 15166528 AAGAGCTCTTGGAGACCAC 59 15168576 15170417 CAAACGGATAGCTCTGCCT 60 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000024622 1 1 7 80 19 15309151 15309170 CATTTCTGAGAGTGGTGTGG 59 15309211 15310320 AGAGTAGCAATCATTTGAGCC 59 NA Rattus norvegicus 81 Sbspon ENSRNOG00000007258 ENSRNOT00000009530 3 1 1 80 5 2835815 2835834 TGCCTTCAACAAGAAGAGGA 59 2835875 2837479 TCCATACAGTATCCAGCATCC 59 NA Rattus norvegicus 81 Metrnl ENSRNOG00000046202 ENSRNOT00000072190,ENSRNOT00000088495 1 2 2 80 10 110905682 110906719 CAGTGACTTTGTTGTCCGAG 59 110906762 110906780 ACCCGTAGGTGAATGACTG 59 NA Rattus norvegicus 81 AABR07065778.2 ENSRNOG00000047308 ENSRNOT00000074472 1 1 1 60 6 141008186 141008204 CCAAGAACACCCTGTACCT 59 141008144 141008163 AAATAAGTGGCAGTGTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctla2a ENSRNOG00000039971 ENSRNOT00000061422 3 1 1 80 17 4170818 4170943 GTGACTTGACTACAGAAGAATTCAG 60 4170981 4170999 TGGGCAAATCATGAGTCGT 60 NA Rattus norvegicus 81 LOC100910735 ENSRNOG00000037744 ENSRNOT00000043279 2 1 1 80 12 42345132 42349221 ATGTCCTAGGTCATGTAAGCA 59 42349263 42349281 CCAGGTACATGCACTTCCT 59 NA Rattus norvegicus 81 AABR07065827.1 ENSRNOG00000049315 ENSRNOT00000070923 1 1 1 80 6 143065504 143065605 CAGTAACTGCAGGAGTCCA 59 143065442 143065460 TCTTCACTGAAGAGCCAGG 59 NA Rattus norvegicus 81 AABR07065827.1 ENSRNOG00000049315 ENSRNOT00000070923 3 1 1 80 6 143065501 143065602 TAACTGCAGGAGTCCACTC 59 143065439 143065459 AAATCTTCACTGAAGAGCCAG 58 NA Rattus norvegicus 81 Rab40c ENSRNOG00000020067 ENSRNOT00000027266 3 1 1 82 10 15282813 15282832 AAAGGCGAGATTCTGGAGAG 60 15257865 15282774 GTAGTCTTATAGTCTATTCCGTTGC 59 NA Rattus norvegicus 81 Arhgap20 ENSRNOG00000025624 ENSRNOT00000035989,ENSRNOT00000059078 3 2 2 81 8 56198608 56198626 AGCAGAAAGGAGGAGAAGC 59 56198671 56224738 AGAATGGCTGTCTCTGGTG 59 NA Rattus norvegicus 81 Ncaph2 ENSRNOG00000009598 ENSRNOT00000084776,ENSRNOT00000055808 1 2 2 80 7 130334180 130334200 TTCTTTAGTGCAGGAAGATGG 58 130334241 130334339 AGTGACAGGAACTCATCCTC 59 NA Rattus norvegicus 81 Pcgf3 ENSRNOG00000000062 ENSRNOT00000000071 2 1 1 80 14 2283258 2283277 GGAGAACAATACCTGTCCCA 59 2280245 2283215 ATGGTTCTGTCATGACCGA 59 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000084571,ENSRNOT00000090638,ENSRNOT00000047472 1 3 6 80 1 41725997 41726442 TGTCATCACAGAGTGGAGG 59 41725935 41725953 TTGAAGTGGCTGAGACTCC 59 NA Rattus norvegicus 81 Dnajc10 ENSRNOG00000006803 ENSRNOT00000009839 3 1 1 80 3 67572195 67572216 TTGATTTCTATGCTCCTTGGTG 59 67572256 67573340 TCCCTTTGATCATCCTAGCC 59 NA Rattus norvegicus 81 Ahnak2 ENSRNOG00000028545 ENSRNOT00000039631 2 1 1 60 6 137339617 137339635 GAAGGGTATGTCGTGTTGG 58 137339575 137339593 GCATCTTGAACTTGCTGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptpru ENSRNOG00000013515 ENSRNOT00000091637,ENSRNOT00000036148 1 2 2 80 5 149961102 149961123 GACATGATCTTTCTCAAGTGGG 59 149960782 149961063 AATGCTTTGGTAGCTGATCTC 59 NA Rattus norvegicus 81 Tpgs1 ENSRNOG00000008296 ENSRNOT00000011010 1 1 1 68 7 12917635 12917653 CAATTTCCCAGACAGTGGC 59 12917585 12917603 AAATCCTCCTCGCTCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100359978 ENSRNOG00000029776 ENSRNOT00000044381 3 1 1 60 6 142992937 142992955 CTGAATAGTCGGCTCACAG 58 142992895 142992914 TGATCTTCAGGAATGCTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trhde ENSRNOG00000005278 ENSRNOT00000007461 2 1 1 80 7 57341334 57341354 ACTTCAGAGTCAACTATGACC 57 57341163 57341293 TGACAGAAAGTACCTCATGG 57 NA Rattus norvegicus 81 Sh3tc1 ENSRNOG00000007993 ENSRNOT00000010784 2 1 1 81 14 80204993 80205343 CCCGAGTACTTGGAGAACTG 60 80205385 80205405 AAAGTCTTAAACGTCACCACG 59 NA Rattus norvegicus 81 Strap ENSRNOG00000007134 ENSRNOT00000009923 1 1 1 80 4 171734424 171734443 ATTACCTGTTGACTGGAGGA 58 171734485 171736059 TAATTTCCTTGGGTTCTGCT 57 NA Rattus norvegicus 81 Sh2d4b ENSRNOG00000042623 ENSRNOT00000032309 3 1 1 80 16 17642157 17642176 GGAAAGTGGAGATGGAGGAC 60 17642215 17658000 CTTCCTCTTTCCTCTTGAATTCC 59 NA Rattus norvegicus 81 Testin ENSRNOG00000018028 ENSRNOT00000024467 1 1 1 82 17 4223842 4224486 CGGTAGTGGCATCTATTATGAG 58 4224529 4224547 CTTCAAAGCCATAGCCGAC 59 NA Rattus norvegicus 81 Sult6b1 ENSRNOG00000049335 ENSRNOT00000075000 2 1 1 80 6 1480875 1480895 CAAGAATTCTGACAACTCACC 57 1477754 1480834 ACATCACCAATATCTTGGCT 57 NA Rattus norvegicus 81 Tom1 ENSRNOG00000014093 ENSRNOT00000018880 2 1 1 80 19 14410731 14413481 AACTCCTGAGCAGATTGGG 59 14413524 14413543 GTCAGCATCTCTGACATCAC 59 NA Rattus norvegicus 81 Alg10 ENSRNOG00000014511 ENSRNOT00000019672 2 1 1 80 7 131332678 131332696 TCTTCTCTTCAGTGTTGGC 57 131332738 131334289 CTTGAAGAAGCCTTGTTTCTG 58 NA Rattus norvegicus 81 AABR07047593.1 ENSRNOG00000006971 ENSRNOT00000009146 2 1 1 97 5 38922698 38922739 AATTTGGGCAGGTTCAGTC 58 38922619 38922637 GTTCAATCAGAGCCACTGC 59 NA DesignNoJunction Rattus norvegicus 81 Elf2 ENSRNOG00000010815 ENSRNOT00000047635,ENSRNOT00000015067 2 2 2 84 2 140316009 140322475 AAAGAAGAAAGTTGGCCGT 58 140315943 140315961 GGCTTTCTTCTTGACTCCT 57 NA Rattus norvegicus 81 Fbl ENSRNOG00000019229 ENSRNOT00000026021 2 1 1 80 1 85110543 85110565 GAAGAGGACCAACATTATTCCTG 59 85110603 85111572 ACATCCACCATTGCAATAAGC 60 NA Rattus norvegicus 81 Mff ENSRNOG00000048016 ENSRNOT00000020712,ENSRNOT00000089451 2 2 2 86 9 88496647 88501536 CAAAGCGAAGAGATCCGAG 58 88501586 88501604 GACCAACTGTCCATTCTGG 58 NA Rattus norvegicus 81 Ces5a ENSRNOG00000025710 ENSRNOT00000049452 2 1 1 80 19 12126985 12133552 GAAATCACAGAGATCGCTGG 59 12133596 12133614 AAGCTGGCTTTGTGTTCTG 59 NA Rattus norvegicus 81 Zfp53 ENSRNOG00000042347 ENSRNOT00000015343 1 1 1 255 1 61375989 61376008 TCAGAGGGTTCATACTGGAG 58 61377453 61377477 GGTATACTTTAGCATGGTTTCTCAG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Lysmd2 ENSRNOG00000010642 ENSRNOT00000014301,ENSRNOT00000083410 3 2 2 86 8 82574859 82576117 AGAAGAGAACAGGGATGAAGAG 59 82576164 82576182 TCTGTGATCTGGCTCAGTC 59 NA InUTR Rattus norvegicus 81 Naa38 ENSRNOG00000009823 ENSRNOT00000013071 1 1 1 60 10 55998317 55998338 GATCGTGACTGTAATGTCATCC 59 55998358 55998536 ATGAATCAGAAGGCTTGAGG 58 NA DesignNoJunction Rattus norvegicus 81 LOC100360411 ENSRNOG00000039601 ENSRNOT00000060703 2 1 1 96 16 15106093 15106112 TACAGCCGTGGTTCTACAC 59 15106015 15106034 AAAGAGTGTATGCCCAGTCC 60 NA Rattus norvegicus 81 Rbm25 ENSRNOG00000002874 ENSRNOT00000003834 3 1 1 80 6 107156302 107156321 GAACTTGAGGAAATCAGGCA 58 107156364 107157793 CTCTTGTTCCATCCTCTGG 57 NA Rattus norvegicus 81 Neu1 ENSRNOG00000032942 ENSRNOT00000049344,ENSRNOT00000083987,ENSRNOT00000083430 1 3 6 60 20 4611845 4611863 GTTCATCGCTATGAGGAGG 58 4612225 4612243 AATGAAAGCCGTAGAGGAC 57 NA DesignNoJunction Rattus norvegicus 81 Aspn ENSRNOG00000050431 ENSRNOT00000074041 3 1 1 83 17 15511747 15511767 TCCTTTCGATTTGTTTCCGAC 59 15509661 15511707 GATGTCAAACCTAGATCAGAACAG 59 NA Rattus norvegicus 81 Mrpl51 ENSRNOG00000019165 ENSRNOT00000025970 2 1 1 97 4 157706593 157706611 AGAGTAATGGCAGGGAGTG 59 157706672 157706778 AATAGTGGAACGCCCAGAG 60 NA InUTR Rattus norvegicus 81 Mir487b ENSRNOG00000036489 ENSRNOT00000054597 1 1 1 60 6 133877134 133877153 AGAGTGGTTATCCCTGTCCT 60 133877176 133877194 AAGTGGATGACCCTGTACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Foxp3 ENSRNOG00000011702 ENSRNOT00000015641,ENSRNOT00000077391,ENSRNOT00000091146 3 3 3 84 X 15755724 15755746 GAGGACACTCAATGAAATCTACC 59 15755517 15755680 GATGGCATTCTTCCAGGTG 59 NA Rattus norvegicus 81 Plcb4 ENSRNOG00000033119 ENSRNOT00000042853,ENSRNOT00000049855,ENSRNOT00000045393 2 3 3 80 3 128929360 128929379 TGATCGGACATTTGATCCCT 59 128929420 128930509 CCTGATATAACCTGCACTGAG 58 NA Rattus norvegicus 81 Tmem212 ENSRNOG00000012608 ENSRNOT00000016858,ENSRNOT00000074723 1 2 2 80 2 113606048 113606957 ACTCAGAGACACTTGTGGG 59 113605986 113606004 GGCTACTGCGAAATGAAGG 59 NA Rattus norvegicus 81 Rassf3 ENSRNOG00000005388 ENSRNOT00000007295 1 1 1 80 7 63516509 63518761 CACGAAATTGGAGAGTGGG 59 63516447 63516465 TTCGTCCTCTTCCTTGTCC 59 NA Rattus norvegicus 81 Cdkl4 ENSRNOG00000040266 ENSRNOT00000061975 3 1 1 80 6 3247160 3251197 GCACGAATTCTAATTCCAGGAG 60 3247101 3247119 TCCCACAAGAAGTTCAGGG 59 NA Rattus norvegicus 81 Mael ENSRNOG00000003790 ENSRNOT00000005060 3 1 1 80 13 84451711 84451732 AGAAATACTCAGAAATGGCTCG 59 84450356 84451672 ATACGAGTTTCTGCTTCTCTG 58 NA Rattus norvegicus 81 Ralgps2 ENSRNOG00000004736 ENSRNOT00000077169,ENSRNOT00000036200 3 2 2 81 13 74490422 74490440 CTTCATGCTCTCATGGCTG 59 74485279 74490378 GACTTAATAACGCCCACGTC 59 NA Rattus norvegicus 81 Tceb1 ENSRNOG00000031730 ENSRNOT00000050236,ENSRNOT00000090313,ENSRNOT00000082813 1 3 3 122 5 2051973 2054773 CACAATGGATGGAGAGGAG 57 2054856 2054877 CCTGATGTTAATGCATGTTCTC 58 NA InUTR Rattus norvegicus 81 Arhgap39 ENSRNOG00000016566 ENSRNOT00000052227 1 1 1 80 7 117800342 117800360 CCCAAGTTCCACTCCTACC 59 117795473 117800299 TATGTGCTGTGTCACTTTGG 59 NA Rattus norvegicus 81 Asic4 ENSRNOG00000019985 ENSRNOT00000027135 2 1 1 80 9 82667660 82667864 TTGACTACATCTATGAGGTCTCC 59 82667904 82667922 CAGTGGACGTCCTAAGTGG 60 NA Rattus norvegicus 81 AABR07033357.1 ENSRNOG00000047243 ENSRNOT00000072550 1 1 1 89 11 18454194 18454227 CATCAATGTCTTGGCCGTC 59 18454280 18454298 TTGGTGAGGTCGATGTCTG 59 NA Rattus norvegicus 81 Dok7 ENSRNOG00000022419 ENSRNOT00000035385 2 1 1 82 14 80940795 80940814 CCTGTTTGACTGCATTGTCC 60 80937822 80940750 CAGAACTTGGGTCTGGGAG 60 NA Rattus norvegicus 81 Slco5a1 ENSRNOG00000008966 ENSRNOT00000011940 1 1 1 80 5 5920969 5935706 AATGTCAGAGACCTACCGA 57 5935750 5935768 GGCTGTGTATGACAGACTC 58 NA Rattus norvegicus 81 AC128212.1 ENSRNOG00000054355 ENSRNOT00000082247 1 1 1 119 8 130569866 130569887 TTCCTGCTAGTTGTGGCTC 60 130569765 130569783 CTCGCTCAGTAGAGTTGGG 60 NA Rattus norvegicus 81 Klhl8 ENSRNOG00000002214 ENSRNOT00000003026,ENSRNOT00000081600 1 2 2 80 14 7190508 7200509 TCACTCTAAAGGTCGGCTC 59 7200553 7200571 ACATGGCTCTGAAGTAGGG 59 NA Rattus norvegicus 81 RGD1563157 ENSRNOG00000032523 ENSRNOT00000041376 1 1 1 60 6 42947378 42947397 GGAGCTGTTGAAACAACTGG 60 42947420 42947438 TTTGGCTATGCGAAACTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdh18 ENSRNOG00000009949 ENSRNOT00000013343 2 1 1 80 2 138829940 138830050 CAGGAGCTATAGATATGCCCT 58 138829880 138829899 TCTCCTGCTTCACTATCTCC 58 NA Rattus norvegicus 81 Krt12 ENSRNOG00000011986 ENSRNOT00000079297,ENSRNOT00000016337 1 2 2 80 10 87329939 87331032 GGATAGCCAAGGTGATGGT 59 87329877 87329896 TTAGAGGAGTCGACTGATGG 58 NA Rattus norvegicus 81 Zfp280b ENSRNOG00000028441 ENSRNOT00000081733 2 1 1 60 20 13569772 13569790 CAGATGTTCAGGAAGCCCA 60 13569730 13569748 GAATCACCACCTTCGTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps5 ENSRNOG00000019453 ENSRNOT00000026528,ENSRNOT00000088367 2 2 2 83 1 65663874 65663892 CGGACATCAAGCTCTTTGG 59 65661740 65663830 CCTTCACAGCAATGTAATCCTG 60 NA Rattus norvegicus 81 Slco1c1 ENSRNOG00000009740 ENSRNOT00000013230 2 1 1 80 4 175750049 175751632 TGGCTTTGTGAATCTAGACCA 60 175751673 175751692 ATTAGGTAACCAAGCCACCA 59 NA Rattus norvegicus 81 Plag1 ENSRNOG00000008846 ENSRNOT00000011721 1 1 1 89 5 16794220 16794753 AATTACAAAGGCACATGGCT 59 16794150 16794168 TCAGATGGTCTTTCCGGTG 59 NA Rattus norvegicus 81 Ogfrl1 ENSRNOG00000014142 ENSRNOT00000019062 3 1 1 80 9 29635061 29640396 ACATCTGAATGAGTCTCAGCA 59 29635001 29635020 AAACTCTCGTACCCAAGCTC 60 NA Rattus norvegicus 81 Htr2b ENSRNOG00000017625 ENSRNOT00000023829 1 1 1 82 9 93113993 93116197 AATTTCAATAGGCATCGCCA 58 93113930 93113948 GCTCACAGGTGATGTTGTG 59 NA Rattus norvegicus 81 Zfp606 ENSRNOG00000019127 ENSRNOT00000025981,ENSRNOT00000073006 1 2 3 83 1 66233735 66237018 GCTGTCCAGAGTGGATGAG 60 66233670 66233690 CATTGCTGGATTGTTCTTCCT 59 NA Rattus norvegicus 81 Cit ENSRNOG00000001143 ENSRNOT00000086716,ENSRNOT00000041281,ENSRNOT00000057036 3 3 3 80 12 46345325 46345346 TTACAGTATCCTCATCGGAACC 60 46345154 46345285 TTCTTGTCCAGGAACTCCTC 59 NA Rattus norvegicus 81 Olr1416 ENSRNOG00000046967 ENSRNOT00000052223 3 1 1 60 10 43946716 43946738 GCTATCTATAACTACATGCTCCC 58 43946678 43946698 ACACTACCATGTCCTTCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037356.1 ENSRNOG00000048990 ENSRNOT00000072722 1 1 1 81 X 19386396 19386417 AGGCAACAGAAGGAGAAGAG 60 19386334 19386352 GGACCCACATCATCCTCAG 60 NA Rattus norvegicus 81 LOC100361328 ENSRNOG00000049135 ENSRNOT00000071724 1 1 1 80 9 23316072 23319194 GGACATGCATGTTGAAACTC 58 23319236 23319255 AGAAGGTTGGTGATTACCAG 57 NA Rattus norvegicus 81 Ndufb2 ENSRNOG00000026616 ENSRNOT00000030892 1 1 1 80 4 67383940 67383959 GTGGACAGATGAAGAACTGG 58 67384002 67385198 TCACCTTGCTCTCGTACAG 59 NA InUTR Rattus norvegicus 81 Mir196a ENSRNOG00000035614 ENSRNOT00000053737 1 1 1 63 7 144584265 144584286 GTTTCATGTTGTTGGGATTGAG 59 144584309 144584328 GACTGATGTAACTCAGGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bpifa3 ENSRNOG00000013778 ENSRNOT00000018512 3 1 1 81 3 149607253 149610697 TAGCGAGAATTATTGCACAGG 59 149610740 149610758 TTCAGACGGTCCAGAAGAC 59 NA Rattus norvegicus 81 LOC100363408 ENSRNOG00000047988 ENSRNOT00000073652 1 1 1 87 1 198120569 198120587 TAAGTTCGAGGGAAAGCCA 59 198120893 198120911 CTCAAAGGCATGGATGTGC 60 NA DesignNoJunction Rattus norvegicus 81 Ankrd31 ENSRNOG00000025321 ENSRNOT00000032960 1 1 1 80 2 27666383 27666403 ATGACAAAGCAGTTGGTTCTC 59 27666445 27668649 CACTGATGGTCTGATGCAC 59 NA Rattus norvegicus 81 Sdcbp ENSRNOG00000009683 ENSRNOT00000013563 1 1 1 80 5 19495824 19496467 ATTGGCTTGAAGGATGCTC 58 19496511 19496529 AAAGGCAGGCATGATTGTG 59 NA Rattus norvegicus 81 Dcdc2b ENSRNOG00000048876 ENSRNOT00000071940 2 1 1 80 5 147814222 147814523 GTGGGACTGTACACAAACTC 59 147814161 147814180 CATAGTAGTGGCCATTCACC 58 NA Rattus norvegicus 81 Sox17 ENSRNOG00000027357 ENSRNOT00000033116 1 1 1 103 5 14893660 14893678 AATGCCTTTATGGTGTGGG 58 14893745 14894200 TTCCAGGATTTGCCTAGCA 59 NA Rattus norvegicus 81 Tmem117 ENSRNOG00000006068 ENSRNOT00000008159 3 1 1 87 7 136316937 136380881 TATCGTGATGCAGGACTGG 59 136380932 136380950 GAACTGCATGTGAGGAGTG 59 NA Rattus norvegicus 81 Krt24 ENSRNOG00000010970 ENSRNOT00000014851 3 1 1 86 10 87192782 87193518 CTTCCGAATGAAGTATGAGCA 58 87192716 87192734 ATTTCGTCCAGCACTTTCC 59 NA Rattus norvegicus 81 Zfp870 ENSRNOG00000030416 ENSRNOT00000042638 2 1 1 91 7 15163537 15163748 CCTCTATAGGAAACAAGTTGAGC 59 15160880 15160898 GAACTTCTCCACCAGTTGG 58 NA Rattus norvegicus 81 Usp51 ENSRNOG00000021434 ENSRNOT00000029397 2 1 1 158 X 19270223 19270242 GACTTTCTAGATCAAGCGCG 59 19271101 19271119 TTCTCGATGCATTCTCAGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Usp51 ENSRNOG00000021434 ENSRNOT00000029397 3 1 1 158 X 19270224 19270242 ACTTTCTAGATCAAGCGCG 58 19271101 19271120 ATTCTCGATGCATTCTCAGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Iqcf5 ENSRNOG00000013164 ENSRNOT00000017570 1 1 1 148 8 115213531 115213549 TGATGGGAACATCTAGCCC 59 115214501 115214519 GAATGATCCACGCGTTGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fbrs ENSRNOG00000042728 ENSRNOT00000055003 1 1 1 80 1 198935486 198935504 CTGCAGCCAATCCTTTCAC 60 198935548 198936632 GCCCAAAGGGATCAATGTG 59 NA Rattus norvegicus 81 Slc22a14 ENSRNOG00000042259 ENSRNOT00000055928 2 1 1 80 8 127858817 127860177 TACTGTTCAAGAGACTCCCTG 59 127858757 127858775 ACACATTGACTCCTCAGCC 60 NA Rattus norvegicus 81 Magix ENSRNOG00000010092 ENSRNOT00000013553 1 1 1 80 X 15672447 15672469 GCAGATATAGAAGTTGCAGACAG 59 15672507 15673933 CGTGTCAGATCTTTGATGCTG 60 NA Rattus norvegicus 81 Atf7ip ENSRNOG00000008870 ENSRNOT00000011803 2 1 1 80 4 170520294 170520317 CTGATGAAGAGGATATTTCGTGTG 60 170520356 170522956 TTTCTCCCTCTGGAGAGCT 60 NA Rattus norvegicus 81 Gapdhs ENSRNOG00000021009 ENSRNOT00000028518,ENSRNOT00000067813 1 2 2 80 1 89186887 89187604 GGCATCAATGGATTTGGAC 57 89186825 89186843 ATTCACTGCTACTACCCGA 58 NA Rattus norvegicus 81 Tmem200c ENSRNOG00000049880 ENSRNOT00000072916 1 1 1 162 9 117044773 117044791 GTTCTTTGTGTCTCCCGAG 58 117047692 117047710 TATCCTCAGTAGGCCACCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rb1cc1 ENSRNOG00000006833 ENSRNOT00000061884 2 1 1 80 5 13070594 13070614 CGAAGAGTCTCTTATGATGCC 58 13067118 13070555 GCAACTTCATACATTTCCACTG 58 NA Rattus norvegicus 81 Shank3 ENSRNOG00000052296 ENSRNOT00000085191 2 1 1 80 7 130506245 130506265 AGTCTGTAGATGTGGAAGGTG 59 130506307 130506407 CGTTCACTCCGTTTACCTC 58 NA Rattus norvegicus 81 LOC286960 ENSRNOG00000013245 ENSRNOT00000017852 3 1 1 82 4 69209716 69209735 CAGATCCTGTGCATCTACAG 58 69209144 69209671 GTGCTGGGTATTTACCACC 58 NA Rattus norvegicus 81 Myom1 ENSRNOG00000057701 ENSRNOT00000085362 2 1 1 80 9 119452115 119452229 GGAAGATAGCTTTATCCGCC 58 119452269 119452290 AGTAACAGACAAAGGAGTACAG 58 NA Rattus norvegicus 81 Myom1 ENSRNOG00000057701 ENSRNOT00000085362 3 1 1 80 9 119388192 119396158 CGTCTTTGTTCGAGATGCTG 60 119396199 119396219 TTGTTAGCATCCAAAGACACC 59 NA Rattus norvegicus 81 Nup88 ENSRNOG00000006126 ENSRNOT00000009015 1 1 1 80 10 57584010 57584029 CCAGACTCCTTTGAGAAGCA 60 57583737 57583971 CTTCTCAGATGACTTGAGAAGTG 59 NA Rattus norvegicus 81 Cars ENSRNOG00000020651 ENSRNOT00000050721 2 1 1 80 1 216778484 216779447 CCCTGAATGTTCTCCCTCC 60 216778422 216778443 CAATCTTCTGGACGAAGTTCAC 60 NA Rattus norvegicus 81 Flot2 ENSRNOG00000009681 ENSRNOT00000078757,ENSRNOT00000014104,ENSRNOT00000014118,ENSRNOT00000088721 2 4 4 81 10 65307778 65307796 CACCAAGATTGCTGACTCC 59 65307630 65307735 CTCAGCTGTCTTGATGTTGAC 59 NA Rattus norvegicus 81 LOC100910606 ENSRNOG00000048998 ENSRNOT00000072522 3 1 1 60 5 137497791 137497811 ATTCTGGATATGGGCTATGTC 57 137497833 137497851 CACAGACCAGATGTACCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uggt1 ENSRNOG00000014901 ENSRNOT00000020558 3 1 1 80 9 42774705 42774725 CTGGCTATGGTGTAGAATTGG 59 42773467 42774663 TTACCTCGGTCCCTTTCAC 59 NA Rattus norvegicus 81 Ppargc1a ENSRNOG00000004473 ENSRNOT00000006071 3 1 1 80 14 63095901 63100909 TGGAGTGACATAGAGTGTGC 60 63100949 63100970 TTCAGAAAGGTCAAGTTCAGGA 60 NA Rattus norvegicus 81 Sntg1 ENSRNOG00000007294 ENSRNOT00000009679 3 1 1 80 5 10243711 10263521 GAAGACTGTGCATGTGCTC 59 10263562 10263583 GTAGTTGAGGTGTAATCCACTG 59 NA Rattus norvegicus 81 Lrrc18 ENSRNOG00000020080 ENSRNOT00000027204 1 1 1 88 16 9253710 9256995 CCAGGAAGAATGGAGTGTG 58 9257047 9257065 TTTGGGTTCTCATGCAGAC 58 NA InUTR Rattus norvegicus 81 Fmo3 ENSRNOG00000003620 ENSRNOT00000004864 3 1 1 80 13 80845743 80846478 AAGACTCCTTTCCAGGTCTG 59 80845682 80845700 CTTTCCATGTTCCTGGCTC 59 NA Rattus norvegicus 81 Cd68 ENSRNOG00000037563 ENSRNOT00000056918 1 1 1 80 10 56269598 56269749 TTGGATTCAAACAGGACCGA 60 56269537 56269558 GGAAGGACACATTGTATTCCAC 59 NA Rattus norvegicus 81 Fam193a ENSRNOG00000013832 ENSRNOT00000018616 2 1 1 80 14 81568519 81568538 AGAGTTGCGTAAAGTTGCTG 59 81564848 81568478 TTCATTGTCATCTGCTCATCC 59 NA Rattus norvegicus 81 LOC684299 ENSRNOG00000039663 ENSRNOT00000060827 3 1 1 82 9 23559742 23561851 GAAGGAAGGGTTCTGACAC 58 23559678 23559697 TTGTCCAAGTCAGACTTGTG 58 NA Rattus norvegicus 81 Tnrc6c ENSRNOG00000022395 ENSRNOT00000040629 2 1 1 80 10 106745285 106745305 ATTAACCTCGCCAATTAACCC 59 106745346 106747405 TGTAAACGTTGGTATGCCAG 59 NA Rattus norvegicus 81 Fdx1 ENSRNOG00000012123 ENSRNOT00000016263 1 1 1 96 8 56378347 56386899 GATGGATTTGGTGCGTGTG 60 56378269 56378293 CATCAGTAATGGCATCTAACTTCTC 60 NA Rattus norvegicus 81 RGD1564405 ENSRNOG00000008382 ENSRNOT00000011083 3 1 1 82 5 3676089 3676465 AACCTCAGAACCTCAGTTCTG 60 3676509 3676527 GCTCGTGTCTACAACTTGC 59 NA Rattus norvegicus 81 Nuf2 ENSRNOG00000002711 ENSRNOT00000003650 1 1 1 80 13 87824013 87825324 GGACCATGATTGAAGATTGC 57 87823952 87823970 TGTCTTGATTAATGGCGGT 57 NA Rattus norvegicus 81 Mtl5 ENSRNOG00000014671 ENSRNOT00000019861 2 1 1 81 1 218635681 218635701 AAGTTCTCATCATCCCAGGAG 59 218635744 218637407 GCTGACAAATCACCATGGG 59 NA Rattus norvegicus 81 Ifngr2 ENSRNOG00000002032 ENSRNOT00000002779 3 1 1 80 11 31701928 31704879 AGTACAGCTACGTCGATGG 59 31704921 31704941 TGAAGTCACATTTCGTCTCTG 58 NA Rattus norvegicus 81 Zfp398 ENSRNOG00000006703 ENSRNOT00000008743 2 1 1 80 4 77535727 77536085 CTCATCTCCATGGATTATGCC 58 77536125 77536145 GTCATCTGTACTGTGTTCTCC 58 NA Rattus norvegicus 81 Ckap2l ENSRNOG00000026143 ENSRNOT00000039794 2 1 1 82 3 121804885 121804903 TACTGGCAAGTAAAGGCCC 60 121799989 121804839 CAGCTCCTGTATTGGTGCT 60 NA Rattus norvegicus 81 Ifng ENSRNOG00000007468 ENSRNOT00000009919 1 1 1 80 7 61338924 61338945 TCACTAACTTCTTCAGCAACAG 59 61338986 61341290 TCTGTGGGTTGTTCACCTC 60 NA Rattus norvegicus 81 Rbp3 ENSRNOG00000051911 ENSRNOT00000090679 2 1 1 80 16 10284442 10284461 CTGGACAAGATCTACAACCG 58 10284504 10285934 GCCATATCGTTCACCTGTG 59 NA Rattus norvegicus 81 LOC100359539 ENSRNOG00000008450 ENSRNOT00000011163 2 1 1 60 19 25392533 25392554 ACTTATTAGCAGAGATGAGGGT 59 25392575 25392593 CAGGTGCTTGAACATCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100359539 ENSRNOG00000008450 ENSRNOT00000011163 3 1 1 60 19 25392228 25392246 CGCTGTTTCTATGGCTTCC 59 25392269 25392288 GGAGACTGTACATTTCGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnksr3 ENSRNOG00000018052 ENSRNOT00000024418,ENSRNOT00000082931 2 2 2 83 1 43825007 43831778 TCTGCGCACTGAATTATGG 58 43824942 43824960 TCTGCAGATTATGGGAGGA 58 NA Rattus norvegicus 81 Npl ENSRNOG00000002775 ENSRNOT00000003713 3 1 1 80 13 70943683 70946826 AGTTACCAGTTCCGCATCC 60 70939666 70939684 CATGATGGCTTTGGTCTGC 60 NA Rattus norvegicus 81 Rn60_1_1361.1 ENSRNOG00000051102 ENSRNOT00000076782 2 1 2 60 1 134999674 134999694 TGGAACACATCAATCTACACC 58 134999716 134999734 CCAGGAAAGTCAAACTCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eva1c ENSRNOG00000002072 ENSRNOT00000002838 1 1 1 82 11 31069364 31075200 TTGCTTACATTCGAGCCCA 60 31075246 31075264 ACACAGTGTGAGGAACAGG 60 NA Rattus norvegicus 81 Kcng3 ENSRNOG00000004535 ENSRNOT00000006094 3 1 1 131 6 6842164 6842182 ATCGTGTCTATGGTGGTGC 60 6795686 6842069 TTCAATTATCCCGGAGGGC 60 NA Rattus norvegicus 81 Slc38a4 ENSRNOG00000006653 ENSRNOT00000085620,ENSRNOT00000009187 3 2 2 80 7 138472659 138472802 GTATTCAATTCCCGCACGG 59 138472597 138472616 GTAGATGGGAAGGACCTCAG 59 NA Rattus norvegicus 81 Sorbs2 ENSRNOG00000013391 ENSRNOT00000029628 2 1 1 80 16 49630215 49630234 GCTGGAACTCAGAGAAAGTG 59 49628296 49630174 GTTCTTCTTGAAGTTCCCACG 60 NA Rattus norvegicus 81 Polr2k ENSRNOG00000010408 ENSRNOT00000013869 3 1 1 146 7 74990054 74990072 ATGTTCAACCACCAAAGCA 58 74990517 74992339 AAACCACCAATCTCTTAGTCC 58 NA Rattus norvegicus 81 Chadl ENSRNOG00000024631 ENSRNOT00000000205 2 1 1 80 7 122923494 122923919 ACCTGGAGCAGATTTCTCC 59 122923432 122923450 GAAGTTGGTTCTGCTGCAG 60 NA Rattus norvegicus 81 Stard7 ENSRNOG00000013479 ENSRNOT00000088834,ENSRNOT00000066114 2 2 2 84 3 119719203 119723823 CAAGTCATTTGATGAGAATGGC 58 119723868 119723886 ACTGACACAGTATCGAGGG 59 NA Rattus norvegicus 81 Dgkk ENSRNOG00000039323 ENSRNOT00000060247 1 1 1 80 X 16460833 16462367 TTACACCTGAAACGATACGCT 60 16460773 16460794 GAGAAATCTTTGCGTCTAGTCC 59 NA Rattus norvegicus 81 Foxi1 ENSRNOG00000006293 ENSRNOT00000009058 3 1 1 109 10 19163958 19163976 ACAACAAGAGCAAAGCTGG 59 19162246 19163885 GTAATTCCCTTTGCCTGGG 59 NA Rattus norvegicus 81 Arhgap11a ENSRNOG00000008115 ENSRNOT00000010994 3 1 1 80 3 105291741 105292407 GTGTTTCTCTTAGGGCAAGTG 59 105291681 105291702 TTGTCTGAAGAAGATTTGGTGC 60 NA Rattus norvegicus 81 Cntnap5b ENSRNOG00000032206 ENSRNOT00000047108 2 1 1 80 13 22563211 22578103 CATCTTAGGCAAAGTTACAGAGAC 60 22578142 22578160 AGGCATCCAATGAAACCCA 60 NA Rattus norvegicus 81 Pigp ENSRNOG00000039850 ENSRNOT00000077233,ENSRNOT00000068743 2 2 2 80 11 34595205 34597630 TCTCAGTTTGGCTTCATACTC 58 34595145 34595166 CCAGTAAGTTAAGCCTAAGGAG 58 NA Rattus norvegicus 81 Fgf11 ENSRNOG00000014882 ENSRNOT00000020152 3 1 1 82 10 56406877 56406895 CAGGGTTTCTACCTCCAGG 59 56406603 56406832 AGATTGAAGTGGGTGAAGGA 59 NA Rattus norvegicus 81 AC118147.2 ENSRNOG00000060693 ENSRNOT00000087411 3 1 1 80 1 88144467 88145622 CCTGCAAAGTTACAATAGGGA 58 88144407 88144428 GAGTTGAGCATGTATTTGATGG 58 NA Rattus norvegicus 81 Psmg1 ENSRNOG00000001643 ENSRNOT00000002242 3 1 1 80 11 36331853 36331874 ATTCAAAGATACCGTCTACTGC 58 36330394 36331812 CAGTAGCTCAGAACTGCTG 58 NA Rattus norvegicus 81 Lamp5 ENSRNOG00000005457 ENSRNOT00000007274 2 1 1 80 3 129019859 129019877 TCTCATGGCAGAGTTTGCA 60 129019920 129020311 TGCTCTGTGATCAGATCCAC 60 NA Rattus norvegicus 81 Mier2 ENSRNOG00000000175 ENSRNOT00000067771,ENSRNOT00000090048 3 2 2 80 7 13045676 13045694 CATCTCTGAGCAGGAGAGC 60 13045737 13046142 TTGGCTATCTGCTCCTTGTC 60 NA Rattus norvegicus 81 Ube3d ENSRNOG00000010802 ENSRNOT00000014600,ENSRNOT00000080195 1 2 2 80 8 94008008 94069194 AGGAATAAAGAGCTTGCCAG 58 94007947 94007965 CTCCAAACAGGTTGTGGAG 58 NA Rattus norvegicus 81 Jph2 ENSRNOG00000008170 ENSRNOT00000010939 3 1 1 162 3 159754059 159754077 CCAGAAGGCTGAGATTGCT 60 159713797 159715484 CTTCTGATACTCCGGACCTG 59 NA Rattus norvegicus 81 U2af2 ENSRNOG00000015914 ENSRNOT00000021391 2 1 1 80 1 72316549 72316568 AGTATGGGCTGGTCAAATCC 60 72313007 72316507 CCACAAAGATCTTTCCGCAG 60 NA Rattus norvegicus 81 Tmco1 ENSRNOG00000003928 ENSRNOT00000082991,ENSRNOT00000005277 3 2 2 80 13 85472107 85473886 AGAAGATAGAGCGACAAGAAGAG 60 85476280 85476300 TCGCAAACATGGATTTCATCC 60 NA Rattus norvegicus 81 Zfp455 ENSRNOG00000031576 ENSRNOT00000042058,ENSRNOT00000070821 2 2 2 80 2 87003455 87003473 GCCTGTTCAGTGGAATCTG 59 87003514 87004027 TTAGAGAAAGTTAGACCCAGGA 58 NA Rattus norvegicus 81 Olr662 ENSRNOG00000048178 ENSRNOT00000047726 3 1 1 60 3 77493467 77493486 GTTTCCTCATGCTGATGGTC 59 77493426 77493444 GCACTGTGGTTTCTTAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rxrg ENSRNOG00000004537 ENSRNOT00000077227,ENSRNOT00000006117 3 2 2 80 13 85855064 85858004 CATGAAGAGGGAAGCTGTG 58 85858048 85858066 CCAGTACTGGCACATTCTG 58 NA Rattus norvegicus 81 Ankrd12 ENSRNOG00000012733 ENSRNOT00000017613 1 1 1 80 9 113616437 113616455 CATGAAGCGTAAACTGCCT 59 113616499 113622885 TGTCCTGGGTCTGAATCTG 59 NA Rattus norvegicus 81 Gltp ENSRNOG00000001192 ENSRNOT00000001581 3 1 1 95 12 47667715 47681128 CTTCTTCGATTGCCTTGGG 59 47682855 47682873 GGGTCAGTGTCATAGACGG 60 NA Rattus norvegicus 81 Gal ENSRNOG00000015156 ENSRNOT00000020425 3 1 1 80 1 218653306 218654570 TTCTTGCACCTTAAAGAGGC 59 218653245 218653264 CTGCTCTAGGTCTTCTGAGG 59 NA Rattus norvegicus 81 Zc3h10 ENSRNOG00000040281 ENSRNOT00000061995 1 1 1 185 7 2970390 2971631 TACCTCAGTCACCAAGAGTG 59 2970224 2970242 ACAGATGGCATCTGAGGTG 60 NA InUTR Rattus norvegicus 81 Pnlip ENSRNOG00000017725 ENSRNOT00000024065 2 1 1 80 1 279804860 279807180 TTTCTGCAAATAAGTGCTTCCC 60 279807219 279807239 TCTTCCCAGGGTATTTGTCAG 60 NA Rattus norvegicus 81 Fbxo39 ENSRNOG00000014953 ENSRNOT00000020071 2 1 1 80 10 58877483 58877503 CTGGACGTTAAGTTTGTGGAG 59 58877544 58878134 AATTCTCACCTTCAGTGTGC 59 NA Rattus norvegicus 81 Nop56 ENSRNOG00000007128 ENSRNOT00000009564 1 1 1 80 3 122807119 122807140 GGCTTTCTTTCTATGAGACTGG 59 122807181 122807385 CTTCCTCTGCCTGTACCAC 60 NA Rattus norvegicus 81 RGD1310819 ENSRNOG00000018366 ENSRNOT00000068496 1 1 1 80 9 44195093 44195920 CCATCAGAACTTGGCTCAG 58 44195031 44195049 TCGGAACTAGCATAGCTGG 59 NA Rattus norvegicus 81 Nifk ENSRNOG00000025701 ENSRNOT00000061619 2 1 1 83 13 34274583 34276476 CTGAGGCTAACCAGGATCC 59 34276520 34276541 CGTCATTGATTTCCATCAACTG 58 NA Rattus norvegicus 81 Bbs7 ENSRNOG00000015816 ENSRNOT00000021453 3 1 1 80 2 123312350 123313102 TAATGGAGACGGAGGTGAC 59 123312288 123312307 GCTGTGATCTGAATAAGCCC 59 NA Rattus norvegicus 81 Erp29 ENSRNOG00000001348 ENSRNOT00000001822,ENSRNOT00000081016 2 2 2 80 12 40624635 40624653 GTTTAAGCGTCTGGCTGAG 59 40624694 40625103 TTGTCACCATAGTCTGAGATCC 59 NA Rattus norvegicus 81 Isl2 ENSRNOG00000015336 ENSRNOT00000021074 2 1 1 110 8 60121651 60121969 AACAGCTGGTCTCCTTCTC 59 60122040 60122061 GACTAGGTACCATACTGTTGGG 60 NA Rattus norvegicus 81 Vsig10 ENSRNOG00000022698 ENSRNOT00000079177,ENSRNOT00000038293 2 2 2 85 12 44968641 44968659 GACACATTCACAGGGTGAC 59 44967598 44968594 GTCACTGTCATCCTGAAACTC 59 NA Rattus norvegicus 81 Adgrb3 ENSRNOG00000012045 ENSRNOT00000016194 2 1 1 80 9 31442104 31442125 TCCCATACGAAATGCTTATGTG 59 31440468 31442068 GGATTCCATGACTATTTCTCTAGG 58 NA Rattus norvegicus 81 Tmem8b ENSRNOG00000015664 ENSRNOT00000021227 1 1 1 80 5 59186269 59191040 TGTTCTTCTCCACGTTCTACC 60 59191081 59191100 ACTGAAGCACATCGTAGTCC 60 NA Rattus norvegicus 81 Gldn ENSRNOG00000024082 ENSRNOT00000033900 2 1 1 80 8 58908452 58908472 CAATGATGATACCTTGGTGGG 59 58908514 58909088 GACGTGATCATGGGTTCTG 58 NA Rattus norvegicus 81 LOC499602 ENSRNOG00000013692 ENSRNOT00000068405 2 1 1 80 2 127811077 127811202 AGGAGACCATCATTATTGGAGG 60 127811241 127811261 AGCAACAATGAAGCCATTCTG 60 NA Rattus norvegicus 81 LOC499602 ENSRNOG00000013692 ENSRNOT00000068405 3 1 1 80 2 127811076 127811201 CAGGAGACCATCATTATTGGAG 58 127811241 127811260 GCAACAATGAAGCCATTCTG 58 NA Rattus norvegicus 81 Wdfy3 ENSRNOG00000061121 ENSRNOT00000088047 2 1 1 80 14 9300803 9300823 GTGACCGCTATTTATGAACTG 57 9300863 9302151 CGATTTCGAGTCTTTACATGG 57 NA Rattus norvegicus 81 Colq ENSRNOG00000019615 ENSRNOT00000026550 2 1 1 80 16 7627664 7629569 ACCCTTAGCACATCATACGG 60 7627603 7627621 TCACGTGAAGTATCGGCAG 60 NA Rattus norvegicus 81 Cyb561d2 ENSRNOG00000021887 ENSRNOT00000031739,ENSRNOT00000082320 3 2 2 81 8 116296768 116297217 TGGCTCCAGTCTATTCTCC 58 116296077 116296096 GAACATCAGGAGTGCTTCAG 59 NA Rattus norvegicus 81 AABR07002241.1 ENSRNOG00000015707 ENSRNOT00000021046 2 1 1 80 1 69514821 69521267 CTTCTGCTACTGATATGGATCAG 58 69521307 69521325 TCTGAATGCATTTGTCCCG 59 NA Rattus norvegicus 81 RGD1565616 ENSRNOG00000021237 ENSRNOT00000028842 2 1 1 80 3 123273553 123274429 AGTATGGCAGATGGATGGT 58 123273491 123273511 AAAGGTATTTCTGGAAGTGGG 58 NA Rattus norvegicus 81 Olr1082 ENSRNOG00000058943 ENSRNOT00000079450 2 1 1 60 7 13553217 13553236 CCTCTCACCTTTCCATTGTC 58 13553176 13553194 GAACTGACGTACACTCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dusp27 ENSRNOG00000003722 ENSRNOT00000004965 1 1 1 80 13 84306054 84312197 CTATAGAGGGAAAGTCCTGGTC 59 84305995 84306014 AAGATCATCAGGTAGGCGAC 59 NA Rattus norvegicus 81 Krt16 ENSRNOG00000014441 ENSRNOT00000019477 2 1 1 83 10 88151125 88151574 AGAGCAAGATCGTTAGAGC 57 88151060 88151078 TGAAGTCATTAGCTGCCAG 58 NA Rattus norvegicus 81 RGD1563365 ENSRNOG00000008696 ENSRNOT00000011511 3 1 1 80 7 26476782 26476802 TCAACTCTAAGCCTCATTCCA 59 26474448 26476741 GAACCTGGTCTAACAAAGGG 58 NA Rattus norvegicus 81 Csrp2bp ENSRNOG00000007160 ENSRNOT00000091529,ENSRNOT00000009437 2 2 2 80 3 138546101 138548403 CTGATTCAGACGTGCATGG 59 138548447 138548465 AAACTTCTGGTACAGCAGC 58 NA Rattus norvegicus 81 Slamf8 ENSRNOG00000008736 ENSRNOT00000011869 3 1 1 80 13 90971178 90974471 CTCAAGGTGTACGATGCAG 58 90971116 90971134 GGTATTGAGAGGTTGAGCC 58 NA Rattus norvegicus 81 Acap1 ENSRNOG00000015674 ENSRNOT00000021357 1 1 1 80 10 56501269 56501287 CTGGAACTGCTTTGAGGAC 59 56501066 56501225 CCTCGATCACATTGACCTG 58 NA Rattus norvegicus 81 Dctn6 ENSRNOG00000013254 ENSRNOT00000017756 2 1 1 80 16 61800744 61807504 GATGTAACCATAGGTCCTAGGA 58 61807545 61807563 TTCGCCGATAATGATTGGG 58 NA Rattus norvegicus 81 Dnajc25 ENSRNOG00000015340 ENSRNOT00000020702 1 1 1 96 5 76167981 76167999 ATGTCCCAGTCTCAGTTCG 59 76168056 76171172 GCTTGTAGACCTCGTAATTCTC 59 NA Rattus norvegicus 81 Dnajc25 ENSRNOG00000015340 ENSRNOT00000020702 3 1 1 97 5 76168060 76171174 ATTACGAGGTCTACAAGCAG 57 76171234 76171252 CTCGTTCTTCATCCACCTG 58 NA Rattus norvegicus 81 Tmem131 ENSRNOG00000017265 ENSRNOT00000023550 3 1 1 80 9 43367898 43369841 CTCCTCAGGGAGGATACAG 58 43367836 43367855 CTTCCCTTGAGACAGTTCAC 58 NA Rattus norvegicus 81 Ccdc18 ENSRNOG00000024545 ENSRNOT00000036442 3 1 1 81 14 2582951 2583662 CTGAATTGAGGATTAAGCTTGC 58 2582891 2582909 TGAGACAACTGGTTCACAG 57 NA Rattus norvegicus 81 Lrrc8c ENSRNOG00000002122 ENSRNOT00000002896 3 1 1 109 14 5290025 5315876 GGATGTACTTTACAAGTCATGC 58 5289937 5289957 GTATTGATCACAGTCTGGGAG 58 NA Rattus norvegicus 81 Krt34 ENSRNOG00000051302 ENSRNOT00000076980,ENSRNOT00000018048 3 2 3 82 10 87953597 87953615 CTAAGTCTGAGAACGCCAG 58 87952707 87953551 AGTCTGGTACTTGGTCCTG 58 NA Rattus norvegicus 81 Tlr10 ENSRNOG00000038722 ENSRNOT00000059124 2 1 1 86 14 45076167 45081674 CTCATCAGAGGAACTTTGACC 59 45081719 45081740 GCACAAAGATGGACTTATAGCT 59 NA Rattus norvegicus 81 Schip1 ENSRNOG00000009276 ENSRNOT00000085876,ENSRNOT00000057473 3 2 2 80 2 172349939 172349957 AAGCTTCTTTGACGATGGC 59 172322176 172349897 CTTTGTAGTCTCGAGGAAAGG 58 NA Rattus norvegicus 81 Tfcp2l1 ENSRNOG00000002414 ENSRNOT00000003280 2 1 1 80 13 34653471 34653490 GATGATTTGGTCCAGGTCTG 58 34653533 34655658 CTTTGGCCTCACATTCCTG 59 NA Rattus norvegicus 81 Krt31 ENSRNOG00000030344 ENSRNOT00000018176 1 1 1 83 10 87960849 87960867 GACCAGGTGTCAGTACGAG 60 87960694 87960802 TTCAGCTCCTCAGTCTGTG 59 NA Rattus norvegicus 81 Angpt1 ENSRNOG00000005854 ENSRNOT00000007979 2 1 1 80 7 81360310 81360328 ATTTCAGCACAAAGGACGC 60 81342625 81360266 CATCAAACCACCAACCTCC 59 NA Rattus norvegicus 81 LOC685782 ENSRNOG00000024884 ENSRNOT00000039260 2 1 1 60 X 99250884 99250904 CTGTTCATCAGAGACACTGGA 60 99250922 99250944 CAGTACATATCTGGGAAAGACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Oas1h ENSRNOG00000057769 ENSRNOT00000085747 3 1 1 81 12 41220193 41220212 AAAGTTCCTGTGGAATCGTC 58 41217293 41220153 CTTCTCCTTACACAGTTGATACC 59 NA Rattus norvegicus 81 AABR07048397.1 ENSRNOG00000038905 ENSRNOT00000022054 2 1 1 81 5 76749220 76749240 TGACCTACTCGTGTGAAGAG 59 76749284 76749302 CTCTTTGGTTCCACCACAC 59 NA Rattus norvegicus 81 Cops4 ENSRNOG00000023650 ENSRNOT00000003046 1 1 1 80 14 10732674 10732694 CTTACATAAACCGAGCTTCCT 58 10732479 10732635 GTGCATAGCAAACCTTATAGTG 58 NA Rattus norvegicus 81 Prdx3 ENSRNOG00000010958 ENSRNOT00000015186 1 1 1 80 1 282247688 282249538 TAGCACCAGTTCTTCATTCC 58 282247627 282247645 TCTCCATTGACAACAGCAG 58 NA Rattus norvegicus 81 Ccdc42 ENSRNOG00000004075 ENSRNOT00000005423 3 1 1 80 10 55176671 55176934 TCATCTTCTGGGAATCTCGC 60 55176976 55176995 CCATCTTAATGGTGCCAAGC 60 NA Rattus norvegicus 81 Ric8a ENSRNOG00000013256 ENSRNOT00000018470 1 1 1 80 1 213611635 213611653 ATGACAGAGGAGCAGAAGG 59 213611697 213612082 TTGGATGAGTCTGTGCCTG 60 NA Rattus norvegicus 81 Pla2g2c ENSRNOG00000016647 ENSRNOT00000087072,ENSRNOT00000043029 2 2 2 92 5 157172163 157175035 ATCTTCTGCTGGACAACCTC 60 157175090 157175108 ATAGGAGAAGAAGGCGCTG 59 NA Rattus norvegicus 81 Pla2g2c ENSRNOG00000016647 ENSRNOT00000087072,ENSRNOT00000043029 3 2 2 92 5 157172163 157175034 ATCTTCTGCTGGACAACCT 59 157175090 157175108 ATAGGAGAAGAAGGCGCTG 59 NA Rattus norvegicus 81 Ddx5 ENSRNOG00000030680 ENSRNOT00000048490 1 1 1 80 10 94985244 94985480 ATGGGCCTATTTGCTTGGT 60 94985182 94985203 CTCTACAATATTCAGCAGCGAC 59 NA Rattus norvegicus 81 Tas2r119 ENSRNOG00000011963 ENSRNOT00000015904 3 1 1 60 2 85305785 85305806 CATCTTTACTGTTGCTGTTCTG 58 85305824 85305845 CATCTGCCTGCTATAATTCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phf3 ENSRNOG00000011756 ENSRNOT00000015638 3 1 1 80 9 37088575 37088594 TGAGTCCAGAAGAACTAGCG 59 37085934 37088535 TCTCGATCATCTCTATGGTGTG 59 NA Rattus norvegicus 81 Akr7a3 ENSRNOG00000017899 ENSRNOT00000024160 1 1 1 80 5 157810073 157812346 TGTACATGGACCGCTACTG 59 157812388 157812408 GGCCATAGGTAGTCTTCAGAG 60 NA Rattus norvegicus 81 Slc39a5 ENSRNOG00000033361 ENSRNOT00000045547 3 1 1 81 7 2817185 2817205 CTTTATCAGATTGACAGCCGT 59 2816968 2817142 TATGAAGCAGGGCAGACAG 60 NA Rattus norvegicus 81 Sidt2 ENSRNOG00000017871 ENSRNOT00000024240,ENSRNOT00000035310 3 2 2 80 8 50239768 50239786 TTTGCCTGGGCATATTCCT 59 50239382 50239725 TCTTCTTCCTTTGCCTCCAG 60 NA Rattus norvegicus 81 RGD1562638 ENSRNOG00000022181 ENSRNOT00000039592 1 1 1 88 16 68586564 68588814 ATTTCCCAGTTGGTGTGGA 59 68588866 68588884 AGGCATCTTCCTGAAAGGG 59 NA InUTR Rattus norvegicus 81 Ccdc130 ENSRNOG00000008319 ENSRNOT00000011150 1 1 1 82 19 25369943 25370971 CTCCGATCTACAGGTTCCG 59 25369879 25369897 ATAGTCACAGTTGGCAGGG 59 NA Rattus norvegicus 81 RGD1563072 ENSRNOG00000021609 ENSRNOT00000029395 3 1 1 80 5 146340452 146341805 ATGCACAAGTAAGTATGCCC 58 146341847 146341866 GCGACCTTAACTATTGACCC 59 NA InUTR Rattus norvegicus 81 Brca1 ENSRNOG00000020701 ENSRNOT00000083111,ENSRNOT00000028109 3 2 2 81 10 89402947 89403467 GCTATTCTTGGGTGATCAAGTC 59 89401980 89401999 GTCACAACGTCTCCTTTGAC 59 NA Rattus norvegicus 81 RGD1561106 ENSRNOG00000048318 ENSRNOT00000044849 2 1 1 60 X 14733528 14733546 AACTTCTCACGCTACTTCC 57 14733486 14733506 GAAATATCTCAGCATTGCGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sec31a ENSRNOG00000002251 ENSRNOT00000091367,ENSRNOT00000003072,ENSRNOT00000033489 2 3 3 80 14 10907296 10908993 GGACCAGACACTTTCTCCA 59 10909035 10909055 CCTTCAGAGTAGTTCCTCGTC 60 NA Rattus norvegicus 81 Crybb2 ENSRNOG00000050023 ENSRNOT00000072683 3 1 1 82 12 49584801 49585807 GACCCATCAAAGTGGACAG 58 49585851 49585871 GACAATCTCCATCTTCTTGCC 59 NA Rattus norvegicus 81 Prdm1 ENSRNOG00000000323 ENSRNOT00000048270,ENSRNOT00000076541,ENSRNOT00000075979 1 3 3 80 20 49477823 49484445 GCAAAGAGGTTATTGGTGTGG 60 49477763 49477781 TGTAGACTTCGCCGATCAG 59 NA Rattus norvegicus 81 Prdm1 ENSRNOG00000000323 ENSRNOT00000048270,ENSRNOT00000076541,ENSRNOT00000075979 3 3 3 82 20 49484492 49484510 TACTTCTGTTCAAGCCGAG 57 49477826 49484447 CACCAATAACCTCTTTGCTG 57 NA Rattus norvegicus 81 Iqcf3 ENSRNOG00000022445 ENSRNOT00000081138,ENSRNOT00000039696 1 2 2 80 8 115255795 115255813 GGAAGGAGACAAAGAGCAG 58 115252684 115255754 ACTTCAGGTTTAGGTTTCTCAG 58 NA Rattus norvegicus 81 Prex1 ENSRNOG00000006952 ENSRNOT00000009517 2 1 1 80 3 163377158 163382183 CAAGCGGAAATCTAGGGTC 58 163377096 163377114 CTGAAGATGTACAGGGAGC 57 NA Rattus norvegicus 81 RGD1564447 ENSRNOG00000032401 ENSRNOT00000049001 1 1 1 60 7 94777878 94777900 GTGAAGAAACCTCATCGTTACAG 60 94777919 94777938 GATAGCGTCTGATTTCTCGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gprasp2 ENSRNOG00000037658 ENSRNOT00000004260 3 1 1 60 X 106361037 106361055 CCTTACCTAATGCCGTCAC 58 106361075 106361097 GACTTCGTAACACTTGTAGACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563606 ENSRNOG00000002975 ENSRNOT00000003981 1 1 1 60 X 16946523 16946541 AAGCCTCTAATGTCACCAC 57 16946565 16946583 CTCTTGTTGCATCGAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Banf2 ENSRNOG00000006032 ENSRNOT00000007946 2 1 1 80 3 138174172 138183560 TCAACAAGGCCTATGTCCT 58 138183604 138183622 AGCAGATGATCCACCTCTG 59 NA Rattus norvegicus 81 Rbms2 ENSRNOG00000003076 ENSRNOT00000088619,ENSRNOT00000048848 3 2 2 80 7 2558712 2558730 CACAGAGAAGTGTGAAGCC 59 2558562 2558668 TCAGAAGGTGCTGCTACTC 59 NA Rattus norvegicus 81 Olr390 ENSRNOG00000017664 ENSRNOT00000023742 2 1 1 60 2 199529072 199529093 GCCAACTTCAACTATGACAGAC 60 199529033 199529053 ACACCAATATGTCCATGTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf122 ENSRNOG00000023473 ENSRNOT00000031701 3 1 1 80 16 64771798 64778113 TGCTACTTCATCAGCAAACTC 59 64771481 64771499 AGCATCACCTTTAAGCACC 58 NA Rattus norvegicus 81 Cyb561d1 ENSRNOG00000052232 ENSRNOT00000087329 2 1 1 104 2 210991305 210991323 CTTTCTGACAGTGCTGTCC 59 210990317 210990336 AAGAGTAGGATCGCTTCAGC 60 NA DesignNoJunction Rattus norvegicus 81 Ube2s ENSRNOG00000016930 ENSRNOT00000022977 1 1 1 81 1 72580545 72581164 CTGTTGAAGTCATGAACTCCA 58 72581207 72581225 GTCAGTGTTGTCACCTCCT 59 NA InUTR Rattus norvegicus 81 Tigd4 ENSRNOG00000010741 ENSRNOT00000014409 1 1 1 60 2 183599261 183599280 GGTGGTATCGAATTGCTCAG 59 183599303 183599321 TTTAGACGCAGCATTGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vimp ENSRNOG00000012576 ENSRNOT00000016916,ENSRNOT00000081746 1 2 2 80 1 126986771 126986790 GACCTTCTACTTCATCGGTC 58 126986831 126988731 CTGTCAGAGGGTTATAACCAC 58 NA Rattus norvegicus 81 Rpl39 ENSRNOG00000038654 ENSRNOT00000059010 1 1 1 60 X 33722052 33722072 TTCAGAATCAAGCGATTCCTG 59 33722012 33722031 TCCATTGAGGAATAGGACGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bcas1 ENSRNOG00000012906 ENSRNOT00000055111,ENSRNOT00000087579 3 2 2 80 3 167981681 167989376 GGAAGAAGTCAGTTAAGGAGGA 59 167976632 167976651 TTACAGTCTCTACTGGTGGC 59 NA Rattus norvegicus 81 Trpv1 ENSRNOG00000019486 ENSRNOT00000026493,ENSRNOT00000026456 2 2 2 80 10 59810588 59810606 TATTTCCGAGTCACCGGAG 59 59810647 59812798 CTGCAGGAAATATTGAATCCCT 59 NA Rattus norvegicus 81 Pidd1 ENSRNOG00000049179 ENSRNOT00000072774 1 1 1 80 1 213984945 213984963 GGGACCTCATGACTTCCTG 60 213984806 213984903 CATAAGCTCACATTCTGCTGG 60 NA Rattus norvegicus 81 Gatc ENSRNOG00000001161 ENSRNOT00000001536 3 1 1 80 12 46995210 46995231 CTGTGCAGAAGAACTACTACAG 59 46995270 47038026 GGCAAAGGAATATTACCTGGG 59 NA Rattus norvegicus 81 Mesp2 ENSRNOG00000014925 ENSRNOT00000020047 1 1 1 80 1 141551533 141551551 CAGAGCCTAGGAACAAGAC 57 141551594 141552363 CAGAAAGACTCTGGTACACC 58 NA Rattus norvegicus 81 Chia ENSRNOG00000033162 ENSRNOT00000086321,ENSRNOT00000041562 1 2 2 80 2 208787620 208795908 GGCCTACTATGAGATTTGTACC 58 208795948 208795967 TAGGCATAGGGAACTTCCTG 59 NA Rattus norvegicus 81 Nsf ENSRNOG00000003905 ENSRNOT00000006361,ENSRNOT00000087824 2 2 2 80 10 91925997 91926490 CGTTATTGGAATGACCAATCG 58 91925937 91925958 ATCTCCATCTTAACTTCCAGTC 57 NA Rattus norvegicus 81 Lhx5 ENSRNOG00000001392 ENSRNOT00000001883 2 1 1 83 12 41668767 41668786 TCGACGAGAACAAGTTTGTG 59 41668097 41668722 AGGATGACACTGAGTTGAGG 59 NA Rattus norvegicus 81 Slc10a5 ENSRNOG00000032426 ENSRNOT00000045438 1 1 1 60 2 93670011 93670032 AAGCAAGGAAGTCATTTCTCAG 59 93670052 93670071 GTAAACGACAGCATTTCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912586 ENSRNOG00000034110 ENSRNOT00000066758 1 1 2 115 10 87721757 87721775 CTGCATTTCTAGCTGCTGC 60 87695183 87695201 TAGAAATGCAACAGCTGGG 58 NA DesignNoJunction Rattus norvegicus 81 Hsd17b7 ENSRNOG00000002826 ENSRNOT00000003812 1 1 1 80 13 88303375 88303396 CAGAATGACAAGATTACTGCTG 58 88300166 88303336 TTCCCGAATCAGGATAAAGTG 58 NA Rattus norvegicus 81 Eno3 ENSRNOG00000004078 ENSRNOT00000005612 2 1 1 80 10 57283402 57283518 CCAGCTTATGAGGATTGAGG 58 57283560 57283579 CATTTGGCCTTTGGATTACG 58 NA Rattus norvegicus 81 Dcakd ENSRNOG00000021682 ENSRNOT00000080077,ENSRNOT00000031498 1 2 2 81 10 91098712 91100969 TACTTCCTCCGAGGGTACC 60 91098649 91098668 GCTTCATGTACTTGAGCAGC 60 NA Rattus norvegicus 81 Slc25a38 ENSRNOG00000018552 ENSRNOT00000025142,ENSRNOT00000083329 1 2 2 80 8 128801419 128802269 ACCCTCATTCTCAAGACCC 59 128802313 128802331 AGCCATCAGAGTTCTACGG 59 NA Rattus norvegicus 81 Lrrc71 ENSRNOG00000014937 ENSRNOT00000020147 3 1 1 80 2 187105564 187105583 AAGATAAGCAAGGGCAAAGC 59 187104454 187105521 AACAACCAGCTGTTCTGAC 58 NA Rattus norvegicus 81 Pc ENSRNOG00000019372 ENSRNOT00000026316,ENSRNOT00000082388,ENSRNOT00000087432 3 3 3 80 1 219856720 219857182 GTCTTCAAGTTCTGTGAGGTG 59 219857223 219857242 GTTTGGCAGGTAGTTAAGGG 59 NA Rattus norvegicus 81 Zfp167 ENSRNOG00000004104 ENSRNOT00000043784 1 1 1 81 8 131940116 131947037 CCTATCTGGGTAAGAACAGGA 58 131947078 131947098 GTGTCAAGTGAATGTGATCCT 58 NA Rattus norvegicus 81 Tfip11 ENSRNOG00000000663 ENSRNOT00000000828 3 1 1 82 12 50323349 50323367 CACACCCTTCTGTCAAGGA 59 50321881 50323306 CATGTAGGCACCAACATTAGAG 59 NA Rattus norvegicus 81 Pfkfb1 ENSRNOG00000000165 ENSRNOT00000000178,ENSRNOT00000081239,ENSRNOT00000033656 3 3 3 80 X 23101789 23101808 CACTACCCTGAGGAATTTGC 59 23097043 23101748 CAGATCCTCATAGGACTCTCC 59 NA Rattus norvegicus 81 Ccdc185 ENSRNOG00000022104 ENSRNOT00000037997 1 1 1 60 13 101161529 101161547 AGATCCCATCTTCCAGGAG 58 101161487 101161506 ATAGCAGCGGTTTATCTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560784 ENSRNOG00000032522 ENSRNOT00000049864 3 1 1 60 X 14889719 14889737 GGAAAGCCGCAACATAGAC 59 14889677 14889698 CGAATCCCTAAGTAAACCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hormad2 ENSRNOG00000037865 ENSRNOT00000080078,ENSRNOT00000057529 2 2 2 81 14 84650310 84650331 ACCTCTATCTCGTGTATAACGT 58 84647898 84650270 AACTGAGGTCATCCAAATAGC 58 NA Rattus norvegicus 81 Scn4a ENSRNOG00000012134 ENSRNOT00000016841 3 1 1 81 10 94540136 94540157 CATTGATGACTTCACATTCCTC 58 94539656 94540094 AAACTCTGTCACATACGCC 58 NA Rattus norvegicus 81 Zglp1 ENSRNOG00000042601 ENSRNOT00000068598 1 1 1 80 8 22082052 22082070 AGGACTCCACTCTGGAGAG 60 22081811 22082011 GGTGCCATATTTCTTGTACCTG 60 NA Rattus norvegicus 81 Lipt1 ENSRNOG00000018464 ENSRNOT00000024896 1 1 1 90 9 44466669 44466687 CAAGTGCTCTAGGTCCCAC 60 44466741 44469368 GGAATTAGCATGCTGCCAC 60 NA InUTR Rattus norvegicus 81 Polr2a ENSRNOG00000028834 ENSRNOT00000068013 1 1 1 80 10 56350768 56350787 TCCATTGCAGATTCCAAGAC 58 56350575 56350730 CTCAATGACCTCTATTACATCCTG 59 NA Rattus norvegicus 81 Pfdn5 ENSRNOG00000012985 ENSRNOT00000017794 3 1 1 80 7 143925361 143926966 TGACGAGTTCTATGTATGTCC 57 143927008 143927026 CCACGTAGTAACCAGTTCC 58 NA Rattus norvegicus 81 Paox ENSRNOG00000018838 ENSRNOT00000064501 2 1 1 82 1 212601204 212601225 GAGTTTATGGAGACTCTGTCAG 58 212601267 212602080 AATTGTGGGTTTCCTGTCAC 59 NA Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000001115,ENSRNOT00000077809,ENSRNOT00000080174 2 3 5 80 20 4816883 4816904 AGATTTCCTACTTAAGCCAGAG 57 4816164 4816842 CATTCATGCTGGACCTCTG 58 NA Rattus norvegicus 81 Defb22 ENSRNOG00000007525 ENSRNOT00000009913 2 1 1 94 3 147962146 147965792 CTTGGTCACAGGTAACTGGT 60 147962071 147962089 CAGGGTCTGTCTGGTACTC 59 NA Rattus norvegicus 81 Htr3b ENSRNOG00000006920 ENSRNOT00000009574 3 1 1 80 8 53258230 53258250 TTTCTGTGACCTCCACTTACC 60 53250068 53258191 TGCGAATCACTACATTAAACCG 60 NA Rattus norvegicus 81 Abra ENSRNOG00000007999 ENSRNOT00000010539 1 1 1 115 7 80796065 80796083 TAGACACAGAGGACAGTGG 58 80793181 80795986 GTATCTGTTTGCCTGGGAG 58 NA Rattus norvegicus 81 Proser3 ENSRNOG00000024625 ENSRNOT00000032363 2 1 1 80 1 89004454 89004472 GTACCACTGAGGGACAGAG 59 89002043 89004411 GGTTTATGTACTTGGCCACC 59 NA Rattus norvegicus 81 Tmem167b ENSRNOG00000042160 ENSRNOT00000023728 1 1 1 61 2 211349065 211350216 TTACAAAGCTGCTGTGATTGG 60 211349024 211349042 TTACGATGCAGGCAATTGC 60 NA DesignRelaxed Rattus norvegicus 81 Aptx ENSRNOG00000006582 ENSRNOT00000046463,ENSRNOT00000090891 3 2 2 80 5 57001657 57001676 TAGAAGCTGTTGTGATTGGT 57 56999847 57001616 CTTTCAACTGTACTTGCTGTC 58 NA Rattus norvegicus 81 Fstl4 ENSRNOG00000006565 ENSRNOT00000067809 1 1 1 80 10 38419453 38419471 ACCTCCTGAGATTTGACGA 58 38419515 38476852 GTTGAATCACCTGGAAGGC 59 NA Rattus norvegicus 81 Fstl4 ENSRNOG00000006565 ENSRNOT00000067809 2 1 1 80 10 38419453 38419472 ACCTCCTGAGATTTGACGAC 60 38419515 38476852 GTTGAATCACCTGGAAGGC 59 NA Rattus norvegicus 81 Lysmd4 ENSRNOG00000050624 ENSRNOT00000075131 3 1 1 90 1 128200419 128202369 CAGTATGGCTGCAAAGTCG 59 128202418 128202441 CTGGAATCTTGATCGATTTCAGAG 60 NA Rattus norvegicus 81 Fam47a ENSRNOG00000003836 ENSRNOT00000005141 1 1 1 60 X 45965529 45965547 GTTTGTGAAGGAAGGGCTG 59 45965568 45965589 GATCATACCTTTACTAGGCGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dcaf12l2 ENSRNOG00000031533 ENSRNOT00000047171 2 1 1 60 X 130824162 130824182 TCTACCACCACATCATCACTG 60 130824122 130824143 CGGATATCATAGAAGAGCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rad21 ENSRNOG00000004420 ENSRNOT00000006209 3 1 1 80 7 91522378 91524490 CACTGCCAGACTTAGATGAC 58 91522317 91522340 CTCTCATGGTTATCTCTTCTACTC 58 NA Rattus norvegicus 81 Usp27x ENSRNOG00000002844 ENSRNOT00000003800 3 1 1 60 X 15989293 15989311 TCTGGAAACCCATCTCCTC 58 15989335 15989353 GAGCATGAATCCACACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-CE3 ENSRNOG00000031607 ENSRNOT00000050099 3 1 1 97 20 4932633 4932652 CATTATTGGAGCTCTGGTGC 59 4932195 4932397 GAGCTGTCAACTAACCTGGA 60 NA InUTR Rattus norvegicus 81 Galp ENSRNOG00000022129 ENSRNOT00000034854 2 1 1 81 1 71354727 71354745 TTATTCCCGCTCTCCAAGG 59 71352667 71354682 CACTATGCGCAGATCTCCA 60 NA Rattus norvegicus 81 Rab21 ENSRNOG00000003923 ENSRNOT00000005258 1 1 1 80 7 58273669 58274619 ACCTTGCTATATGGGATACAGC 60 58273610 58273629 TAGCTCCATTCGAATCTCGG 60 NA Rattus norvegicus 81 Sar1b ENSRNOG00000004820 ENSRNOT00000006567 3 1 1 93 10 37236865 37242262 CATTTGCAAGCCCGAAGAG 60 37242317 37242337 CTAACAGCCTTTCATGGTCTG 59 NA Rattus norvegicus 81 Hmg20a ENSRNOG00000016905 ENSRNOT00000022976 2 1 1 81 8 61136602 61136623 CCATTTCCAGAAATCACAAGGA 59 61136665 61141131 CTTCATCAAGGTAGCGCTG 59 NA Rattus norvegicus 81 Vav2 ENSRNOG00000007422 ENSRNOT00000009893,ENSRNOT00000081376 3 2 2 80 3 5830864 5830884 TTTCAGTTCTTCTGCAAGACG 59 5829402 5830823 TGGCTTGATGTTTGACATGG 59 NA Rattus norvegicus 81 Spink12l1 ENSRNOG00000051016 ENSRNOT00000074521 3 1 1 83 2 36093345 36093363 TCTCAGCAACATGAAGCCA 60 36093410 36094991 TGGCTCACAGCATCTACAG 60 NA Rattus norvegicus 81 Slc25a11 ENSRNOG00000003815 ENSRNOT00000005144 1 1 1 80 10 57266557 57266575 GAGCTGTTGTCGTCAATGC 60 57266411 57266514 CAGAGAAGTAGCCTGAGTCC 59 NA Rattus norvegicus 81 Chrna5 ENSRNOG00000013610 ENSRNOT00000065771,ENSRNOT00000088304 1 2 2 80 8 59582909 59584576 CTGGTTGAAGCAGGAATGG 59 59584614 59584638 GGAACACGTATAATCTTTATCCCAC 60 NA Rattus norvegicus 81 Dnai2 ENSRNOG00000024523 ENSRNOT00000038852 1 1 1 80 10 103287035 103287054 ATGGACATCACCAGAAAGGA 59 103287097 103292220 CTTGGTTGGCAAGGTAGAC 59 NA Rattus norvegicus 81 Serpinf2 ENSRNOG00000003233 ENSRNOT00000004322 1 1 1 80 10 62266307 62268851 CCTGAGATACAGGTGGCTC 59 62266245 62266264 GTTCCACCCAAAGTAAGTGG 59 NA Rattus norvegicus 81 LOC100912488 ENSRNOG00000048854 ENSRNOT00000040431 1 1 1 60 8 42323551 42323570 GCGATTTCTCTGTTCTTTGG 58 42323590 42323611 ATTCAGCAGAAGATGGTTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ficd ENSRNOG00000059799 ENSRNOT00000082809 1 1 1 116 12 48662167 48662931 ACTGGAGCCACAGATTCTG 59 48662069 48662087 CATTTGGGTTCAGCCACTG 59 NA InUTR Rattus norvegicus 81 Fam64a ENSRNOG00000008040 ENSRNOT00000010975 2 1 1 94 10 58614402 58614420 GGAAACTCCAGAGCCAGAG 60 58614478 58616134 AGGACTCCTGGATCCTCTG 60 NA Rattus norvegicus 81 S100pbp ENSRNOG00000007099 ENSRNOT00000009436 2 1 1 80 5 147336898 147340923 TCTTACCACACGAAATTATGCC 59 147336839 147336858 TTGTTTCTGTCAACCCACTG 59 NA Rattus norvegicus 81 Ctdspl ENSRNOG00000046257 ENSRNOT00000075793 3 1 1 170 8 127712685 127716174 ATACACCAGGTGTACGTGC 60 127719867 127719886 GGATTCTCTGAAGAGTCGGG 60 NA InUTR Rattus norvegicus 81 Esyt1 ENSRNOG00000060753 ENSRNOT00000082107 3 1 1 80 7 2934912 2935007 TGGATCAGGTTCTACAGTGG 59 2934851 2934871 CCAAGTAGACAACAAGGATGG 59 NA Rattus norvegicus 81 Atf6b ENSRNOG00000000431 ENSRNOT00000084938 1 1 5 60 20 4420936 4420955 TCTATGTTGTCTCCTTCCGA 58 4421108 4421126 GTCTTGTTGTGGCTGATGG 59 NA DesignNoJunction Rattus norvegicus 81 Pold2 ENSRNOG00000014098 ENSRNOT00000084633,ENSRNOT00000019288 3 2 2 80 14 86112389 86112623 TGACGGAGTAAGGTTCCTG 59 86112327 86112346 TCTAAATGGTCCTCCATGCT 59 NA Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000011226,ENSRNOT00000090161 1 2 4 80 8 39186416 39187752 CAAACCACTTAACAGAGGAGC 59 39186356 39186379 TGCTTAGAGAATCCACTAGAAGAC 60 NA Rattus norvegicus 81 Kdm2a ENSRNOG00000019145 ENSRNOT00000054850 3 1 1 80 1 219578560 219578917 AGTGCTTAGCACCTAGACTG 59 219578499 219578520 AGTCCTGTGTCTCTTCATTCTG 60 NA Rattus norvegicus 81 Sec14l4 ENSRNOG00000004555 ENSRNOT00000087383,ENSRNOT00000006116 1 2 4 80 14 84316024 84316770 GAGGCTGGTGTCTATGTCC 60 84316814 84316832 CACTTCAACCGTGAAGCTG 60 NA Rattus norvegicus 81 Sapcd2 ENSRNOG00000013069 ENSRNOT00000017466 2 1 1 81 3 2596061 2596156 TTCTCACTCAGGAGGTGAC 58 2596201 2596219 AACAGCTGCTTGATGAGTG 59 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000080108,ENSRNOT00000077863 3 2 6 110 5 158125983 158126002 GTGTACTCAGCAGTTTACGC 59 158126075 158127824 GATCTCCCTGAGTAGCTGC 59 NA Rattus norvegicus 81 Ufsp2 ENSRNOG00000012087 ENSRNOT00000016723 3 1 1 80 16 49471333 49471351 GTCTGCTCATGGTTCAGAC 58 49471067 49471289 ATCAACTAGAGCCTGCTGG 59 NA Rattus norvegicus 81 Echdc1 ENSRNOG00000011622 ENSRNOT00000015440 2 1 1 83 1 30906419 30915730 GAATGCTTTCTCAGGTGCC 59 30906354 30906372 ATGAGGCCTTTCCCTTCTG 59 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721,ENSRNOT00000080289,ENSRNOT00000072848,ENSRNOT00000077561 1 6 8 81 20 4365725 4365829 AGACTCGAGGAGAGGAAGG 60 4365874 4365892 TTTCCGCTTCCTCTGACTG 60 NA Rattus norvegicus 81 Samhd1 ENSRNOG00000006418 ENSRNOT00000008961,ENSRNOT00000067748 3 2 2 81 3 153224177 153224195 CCTGTACGAGATAGTGGCT 58 153222821 153224133 AAGATGGTGACAGTCTCTGG 59 NA Rattus norvegicus 81 Mir26a ENSRNOG00000035582 ENSRNOT00000053705 1 1 1 60 8 127714452 127714475 CTTGTTCAAGTAATCCAGGATAGG 59 127714492 127714512 CAAGTAACCAAGAATAGGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561161 ENSRNOG00000039582 ENSRNOT00000085826,ENSRNOT00000060673 2 2 2 80 2 45192568 45192587 CTCTGTTTGTGACCGTTGAG 59 45192630 45206815 AATTCACCCACACCTGGAG 60 NA InUTR Rattus norvegicus 81 RGD1561444 ENSRNOG00000026979 ENSRNOT00000031893 2 1 1 80 8 23439176 23439196 GACCCAAATACAAGATGGGAC 59 23439237 23446010 TCTTCGTAAGATACCTGGCT 58 NA Rattus norvegicus 81 RGD1561444 ENSRNOG00000026979 ENSRNOT00000031893 3 1 1 80 8 23439176 23439195 GACCCAAATACAAGATGGGA 57 23439237 23446010 TCTTCGTAAGATACCTGGCT 58 NA Rattus norvegicus 81 Mrps22 ENSRNOG00000047984 ENSRNOT00000070953 3 1 1 80 8 106609712 106610223 AGAACCTTAAGACCATGTACAG 58 106609653 106609671 TGGAATCTGGCTCAAACTG 58 NA Rattus norvegicus 81 Olr1308 ENSRNOG00000005997 ENSRNOT00000007862 2 1 1 60 8 43349795 43349814 AATATTGTCTCACCCATGCT 57 43349834 43349855 TCTTCACTTCCTTATTCCTCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prpf4 ENSRNOG00000014777 ENSRNOT00000019910 3 1 1 81 5 78276255 78276274 TATTGAAGGCCATACAGTCC 57 78276318 78279042 ACGGTCATAACAGGTTGTG 58 NA Rattus norvegicus 81 Itga1 ENSRNOG00000053550 ENSRNOT00000086114 3 1 1 80 2 47153790 47161285 CAGTCCACGAACACATTCC 59 47153728 47153747 TGGACACATTCAGAGTGAGG 60 NA Rattus norvegicus 81 Sfxn4 ENSRNOG00000036572 ENSRNOT00000054674 1 1 1 80 1 282225967 282225985 CCATCGAGGAATTGAGGTG 58 282219230 282225926 TCTTTAATAGCCTTTCTCCCAG 58 NA Rattus norvegicus 81 RGD1560789 ENSRNOG00000020641 ENSRNOT00000035386 3 1 1 60 8 43534484 43534536 GGTAAAGCTGAAGACAAGGAG 59 43534444 43534462 TGTCCTTAACCAGGTGACC 59 NA DesignNoJunction Rattus norvegicus 81 Sacm1l ENSRNOG00000005149 ENSRNOT00000007223 2 1 1 80 8 132607229 132618253 ATCTGAAGCTGCATATTACACC 59 132618289 132618312 GGTCAATGATGAGTACATCATCTG 60 NA Rattus norvegicus 81 Cyp21a1 ENSRNOG00000000428 ENSRNOT00000031548 3 1 2 80 20 4487970 4488088 CCTTTCTCAGGTTCTTCCC 58 4487908 4487927 CCTGCATTACGATATGGTCC 58 NA Rattus norvegicus 81 Kank2 ENSRNOG00000010643 ENSRNOT00000045488,ENSRNOT00000014135 1 2 2 80 8 22800761 22800780 CCTCATATCAGCATGCTTGG 59 22799854 22800719 TAAGCCACTTTCAGTTCTCG 58 NA Rattus norvegicus 81 Dbndd2 ENSRNOG00000014571 ENSRNOT00000019688 2 1 1 88 3 160936348 160936369 ATTTATTGACCTTGCGGATCAG 59 160936418 160937843 CATCCACTCCAGACCTCTG 59 NA Rattus norvegicus 81 Cenpk ENSRNOG00000039740 ENSRNOT00000060962 1 1 1 80 2 34333970 34335211 ATGAAATGTTAGAGGTCCCAC 58 34335251 34335271 TCTTCAAGAAAGTCTCACTGG 58 NA Rattus norvegicus 81 LOC102550797 ENSRNOG00000047861 ENSRNOT00000075593 1 1 1 80 8 40879641 40880375 GCAACATCTGGTCTCAGGA 59 40879579 40879599 AGCAACCTATTCTTCAGGAGG 60 NA Rattus norvegicus 81 Bcar3 ENSRNOG00000013737 ENSRNOT00000065111 3 1 1 80 2 226672902 226672920 AACTGAAGGACACCATGGG 60 226672962 226674403 CTAACCTTGTGATCTGAGGCA 60 NA Rattus norvegicus 81 Ptk6 ENSRNOG00000012987 ENSRNOT00000017337 2 1 1 80 3 176700044 176700063 AAGGAACGTTCTCGTTACTG 58 176699488 176700001 TAGATGTCCTCCTTGACGA 57 NA Rattus norvegicus 81 Padi1 ENSRNOG00000007067 ENSRNOT00000009921 2 1 1 80 5 159358301 159371102 GATGTGTACAGTGATGTGCC 59 159358240 159358262 GTAGACCATGTAGATCTTCACCT 59 NA Rattus norvegicus 81 Olr1327 ENSRNOG00000052227 ENSRNOT00000092067 2 1 1 60 8 43747953 43747974 ATGTCCTATCAAGTCTGTTCCT 59 43747994 43748013 CACCAATCAAAGCCATACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fer1l4 ENSRNOG00000019467 ENSRNOT00000026451 2 1 1 80 3 151594031 151594225 TGGAAATAACTGCTTTCCACTC 59 151593972 151593991 CCATCCCTAAGTCCATCCTG 59 NA Rattus norvegicus 81 Fer1l4 ENSRNOG00000019467 ENSRNOT00000026451 3 1 1 80 3 151570325 151570493 ATCCCATCTTTGGAGAGGTC 59 151570264 151570284 CATGGTCAAATATGGCCACAG 60 NA Rattus norvegicus 81 Egfl8 ENSRNOG00000000436 ENSRNOT00000068712,ENSRNOT00000000499 1 2 2 80 20 4379800 4379996 TCAAAGAAAGTTTGGGAGTGTG 59 4379741 4379760 ACACTGGTTGACTGTAGGAC 59 NA Rattus norvegicus 81 Adgra2 ENSRNOG00000012991 ENSRNOT00000017776 1 1 1 80 16 69107618 69118386 TGGAGAAGTTGGACCTGAG 59 69107556 69107574 ATCGTTTCAGCTCTCCCAG 60 NA Rattus norvegicus 81 Akna ENSRNOG00000008005 ENSRNOT00000010516 2 1 1 80 5 79196416 79197010 CTGCTATCCAGGAGGATAAGG 59 79196356 79196377 TGTATCTATTTCTGGCCATGGA 59 NA Rattus norvegicus 81 Aknad1 ENSRNOG00000028025 ENSRNOT00000033443 3 1 1 80 2 211551299 211554877 CAAATACAGGTGCAGCCTG 59 211555082 211555102 CAAATCCAAGCACCCTTTCTC 60 NA Rattus norvegicus 81 Ppp2cb ENSRNOG00000015182 ENSRNOT00000020663 2 1 1 81 16 62277582 62277603 GAAACATTTAACCATGCCAACG 60 62275808 62277544 CATGGCACCAATTATATCCTTCC 60 NA Rattus norvegicus 81 Ascc3 ENSRNOG00000037604 ENSRNOT00000057016 2 1 1 80 20 55405684 55405702 CTACATCAGCCGAGGAGAG 59 55405744 55409741 ACAATTCTAGCTGCATTCTGG 59 NA Rattus norvegicus 81 Ccr8 ENSRNOG00000026759 ENSRNOT00000029766 3 1 1 60 8 128781762 128781780 CCCTCATGAGTGTGGACAG 60 128781803 128781822 CTCACTTTGATGGCATGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564370 ENSRNOG00000033652 ENSRNOT00000043491 3 1 1 60 20 42842775 42842794 CTGCATCATCAAGGGAAAGG 59 42842817 42842835 AGTGGTGCATAGCTTCCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1702 ENSRNOG00000050738 ENSRNOT00000041697 2 1 1 60 20 1111152 1111171 GACCACTTCACTATGCTACC 58 1111193 1111212 GCTATTCCTGCAAGAGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc3 ENSRNOG00000001217 ENSRNOT00000001632 2 1 1 60 20 11490249 11490269 ATGTAGTGTACTACGTACGCC 60 11490291 11490309 TTGAGGTACTCCAGGTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500567 ENSRNOG00000026676 ENSRNOT00000030881 3 1 1 83 5 153976730 153976749 GCATCAGAGGAATGTCAAGG 59 153976795 153977552 CTTGCTCCAGAGATCCCTC 59 NA Rattus norvegicus 81 LOC100910382 ENSRNOG00000046733 ENSRNOT00000074181 1 1 1 60 20 915293 915314 CATCCTTCTCTGTCACAATTCC 59 915335 915353 ATGTAGCCACTTTGAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sobp ENSRNOG00000000316 ENSRNOT00000000348 3 1 1 82 20 47893698 47893716 AAAGGACCATGGCAATGTG 59 47860757 47893653 TTGACACCTCATCTTCTGCT 59 NA Rattus norvegicus 81 Nrd1 ENSRNOG00000007111 ENSRNOT00000010462,ENSRNOT00000010440 3 2 2 80 5 128656356 128656375 CCAGTTCTTCATCCATCCAC 58 128656417 128659612 GCAAGCTGATACTCACTGTC 59 NA Rattus norvegicus 81 Gm10100 ENSRNOG00000033928 ENSRNOT00000045125 1 1 1 127 20 11612394 11612412 CAGTTGCTCTTCAGGTTGC 60 11612503 11612521 CAGGAACACATATGGCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defb2 ENSRNOG00000038147 ENSRNOT00000058056 1 1 1 76 16 75227604 75241243 GTTGCTGGAATTCTAGGACC 58 75227547 75227566 TTGAGACAGAACCCTTTCTC 57 NA DesignNoJunction Rattus norvegicus 81 Scn9a ENSRNOG00000006639 ENSRNOT00000065126,ENSRNOT00000079020 2 2 2 80 3 52599716 52599737 CCCATTAAATCTCTACGGACAC 59 52597803 52599675 GACCACTACCCTCATTCCT 58 NA Rattus norvegicus 81 Cyp4v3 ENSRNOG00000042426 ENSRNOT00000019302 1 1 1 80 16 50126710 50132474 CCTTCATGTTTGAGGGTCAC 59 50132516 50132535 GGACTTCTGGATTAGAGCCC 60 NA Rattus norvegicus 81 AABR07050407.1 ENSRNOG00000025261 ENSRNOT00000045406 3 1 1 102 5 164033209 164059613 GGATGCAGGGTTTCTTAACC 59 164059676 164059696 ATTACATCCATGTACAGTGCC 58 NA InUTR Rattus norvegicus 81 Defal1 ENSRNOG00000029462 ENSRNOT00000049394 3 1 1 81 16 75367198 75367791 AAGATTTACGCGTAAGAAGGAC 59 75367833 75367851 CTTGATAGCCGAATGCAGC 60 NA Rattus norvegicus 81 Cdc26 ENSRNOG00000029785 ENSRNOT00000040894,ENSRNOT00000087648 2 2 2 62 5 78262703 78262721 AGCTCGATGACATTGAGGA 59 78254611 78262677 TCTGTTTCTTACGGGCCTC 59 NA DesignRelaxed Rattus norvegicus 81 Stx16 ENSRNOG00000005281 ENSRNOT00000088286,ENSRNOT00000066279 1 2 2 80 3 172177593 172177611 GCAGCATTTCTTCGACACC 60 172177655 172178006 TCATCCGTGAAACCCTGAC 60 NA Rattus norvegicus 81 Stx16 ENSRNOG00000005281 ENSRNOT00000088286,ENSRNOT00000066279 2 2 2 80 3 172174696 172175474 GACGGAGTAGACGAAATACAG 58 172175515 172175534 ATGCTTATCATGAAGGCTGG 58 NA Rattus norvegicus 81 Ppp1r1c ENSRNOG00000024990 ENSRNOT00000034769,ENSRNOT00000081338 1 2 2 80 3 66675268 66675288 CCCTTGTGATTCTCAATGAGC 59 66719385 66722391 ATGCATTCTGGGATTCTTGTG 59 NA Rattus norvegicus 81 Aadacl3 ENSRNOG00000026613 ENSRNOT00000033150 3 1 1 87 5 162330241 162330837 TCAGTTGGATACAGAAAGTCTC 58 162330884 162330903 ATGATCTCAGAAAGTGGGTG 57 NA Rattus norvegicus 81 Nr4a3 ENSRNOG00000005964 ENSRNOT00000008302 1 1 1 80 5 63793211 63793230 ATCTGTATGATGAACGCCCT 59 63793273 63804038 GGTGGGACAGTATCTGGAG 59 NA Rattus norvegicus 81 Syf2 ENSRNOG00000060597 ENSRNOT00000091494 2 1 1 90 5 153269939 153272651 CTGAAGCGGAATGAAGCTC 59 153272705 153272723 TCTTGGCTTCCCAGTTAGC 60 NA Rattus norvegicus 81 Casp9 ENSRNOG00000012944 ENSRNOT00000017972,ENSRNOT00000088523,ENSRNOT00000085378 2 3 4 83 5 160361430 160362978 GACATGCAGATATGGCATACAC 60 160363022 160363040 AGGAAGGGCAGAAGTTCAC 60 NA Rattus norvegicus 81 RGD1559811 ENSRNOG00000013740 ENSRNOT00000018362 1 1 1 127 16 74962919 74962937 AACAAGAATTGAAGCCCGC 60 74960523 74960541 TTTGCTCACCTTGAAGGGA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Zfp703 ENSRNOG00000014199 ENSRNOT00000019002 3 1 1 115 16 69241827 69241845 GGGTCCTGAAGATGCTGAG 60 69240766 69240784 CAAAGGACTCTTCTTGGCG 59 NA DesignNoJunction Rattus norvegicus 81 Bpifa1 ENSRNOG00000013859 ENSRNOT00000018581 1 1 1 80 3 149627010 149627308 CTCCAAGTGAATATGCCCG 58 149627352 149627370 CATGGCTACAATCTCTGCG 59 NA Rattus norvegicus 81 AABR07072894.1 ENSRNOG00000055818 ENSRNOT00000085004 2 1 1 80 3 78263325 78263347 TGTACCCACTATTGCTTGCA 60 78263264 78263283 CCATACAGATTGCTCCACCA 60 NA Rattus norvegicus 81 Defb36 ENSRNOG00000007558 ENSRNOT00000009930 1 1 2 80 3 148082844 148091380 CTCACTCCAGGTGATGCTC 60 148091424 148091442 ATAGACGCTTTCCTTCCGG 60 NA Rattus norvegicus 81 Rims4 ENSRNOG00000010868 ENSRNOT00000014498 3 1 1 96 3 160242026 160244158 AAAGTCCTGCAGGTAATTGTG 59 160241950 160241968 TCAAGTCCAGTTCCTCCAG 59 NA Rattus norvegicus 81 Ppdpf ENSRNOG00000012722 ENSRNOT00000017319 3 1 1 157 3 176691483 176691573 GACTACTATCGGCGACGTC 60 176691824 176691842 AATGGGAGGGTGGATTTCC 59 NA Rattus norvegicus 81 LOC688765 ENSRNOG00000032376 ENSRNOT00000042908 1 1 1 60 16 58731251 58731269 ATCAACCACCTCAAGAGCA 59 58731209 58731227 GGTGTCTAAGGTCGGACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wfdc2 ENSRNOG00000014739 ENSRNOT00000019804,ENSRNOT00000039664 2 2 2 116 3 161021668 161024021 CCAAATTCTGAGCTTCAGCC 60 161024100 161024118 CGAAATGCAAAGGCCAGAG 60 NA InUTR Rattus norvegicus 81 Ankle1 ENSRNOG00000017156 ENSRNOT00000023065 3 1 1 85 16 19803367 19803385 CTCTACACTGCTTCCAGCA 59 19803434 19803637 CAGTGTCTGGAGACCTAGG 59 NA Rattus norvegicus 81 Atp4b ENSRNOG00000018543 ENSRNOT00000025958 2 1 1 95 16 81139506 81139524 TACAGAATTGCTCAGGCCT 59 81138524 81139448 GCAGGAACTTGACAATCCTG 59 NA Rattus norvegicus 81 Cars2 ENSRNOG00000014526 ENSRNOT00000019993 3 1 1 80 16 83290736 83290755 TGGATGCAATGTTGTCATGG 59 83290797 83297374 GACACGTTCATCTCGTTAGC 59 NA Rattus norvegicus 81 Erich2 ENSRNOG00000056087 ENSRNOT00000077551 2 1 1 80 3 56815876 56816105 GATCCAAAGGAGAAACTGATGAG 59 56820132 56820150 GGACAATCTTGGTCTCCGT 59 NA Rattus norvegicus 81 Dhx35 ENSRNOG00000015928 ENSRNOT00000021435,ENSRNOT00000084866 2 2 2 80 3 155304313 155304333 CAACCGTCATTTACAATCCCT 59 155304374 155308531 GGTTCCTAAGCTTGAACACG 59 NA Rattus norvegicus 81 Ikbkb ENSRNOG00000019073 ENSRNOT00000025851 3 1 1 80 16 74177651 74177669 TGGGAAATGAAAGAACGCC 59 74177711 74188907 AATTTGTTCACCTGTCACCTG 59 NA Rattus norvegicus 81 Bpifb3 ENSRNOG00000013398 ENSRNOT00000055349 3 1 1 80 3 149415367 149415386 TGGAGGTTGGAATACCTCTG 59 149415429 149416235 CGACCGCATTCTCAATGAC 59 NA Rattus norvegicus 81 LOC100359503 ENSRNOG00000046342 ENSRNOT00000045955 1 1 1 60 16 70644561 70644580 GTGCGAGTGGAATTTATGGA 58 70644603 70644621 CAGGGCCTTTGAAGTTTCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 L3mbtl1 ENSRNOG00000007044 ENSRNOT00000045677,ENSRNOT00000063906 3 2 2 80 3 159321937 159321956 ATAGCACAGTCAGGCTTCTG 60 159321998 159322313 ACTCGTTTATCCGGAACCTC 60 NA Rattus norvegicus 81 Dpm1 ENSRNOG00000010993 ENSRNOT00000016150 2 1 1 80 3 164969140 164969158 GGCTACGTCTTTCAGATGG 58 164968212 164969098 CACAAATGAAATCGGAACCTC 58 NA Rattus norvegicus 81 Zfp964 ENSRNOG00000042504 ENSRNOT00000066776 3 1 1 60 16 21472819 21472839 AGACTCACACTGAAGACAGAC 60 21472779 21472798 TAACACTCGAAAGATCTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nat3 ENSRNOG00000029977 ENSRNOT00000043305 2 1 1 60 16 23903651 23903672 CAATCATCTTCTTTACTGGGCT 59 23903612 23903632 TCCTCCTAACATTGTGACCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 F10 ENSRNOG00000033444 ENSRNOT00000026677 1 1 1 80 16 81812847 81813839 AATATGAAGATGGTGACCAGTG 58 81812788 81812807 ATGTATAACTCCCAAGGCCA 59 NA Rattus norvegicus 81 Defb39 ENSRNOG00000034275 ENSRNOT00000040406 2 1 1 80 16 75042633 75046167 CAGATCAACTCAGTGTCTGGT 60 75046209 75046227 ATATGGGCATCGGATGGTG 60 NA Rattus norvegicus 81 C1qtnf4 ENSRNOG00000009140 ENSRNOT00000012110 1 1 1 120 3 79717498 79717522 GTAAACATAGGCGACTTCGAC 59 79717604 79717622 TCATCAGCTTCACCGACAG 60 NA Rattus norvegicus 81 Smim18 ENSRNOG00000049689 ENSRNOT00000074543 2 1 1 60 16 62153914 62153935 GTTCATATTTACTGTGGTGTCC 57 62153953 62153974 GCAGTCAAGTACCTCATAAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909556 ENSRNOG00000045875 ENSRNOT00000072097 3 1 1 110 12 20809021 20809596 ACCCTAGTAAGGCTCCTCC 60 20808929 20808949 TAGAAGACATGGAAGGCTGTG 60 NA Rattus norvegicus 81 Atp12a ENSRNOG00000020685 ENSRNOT00000028093,ENSRNOT00000091753 1 2 2 80 15 36581668 36582521 CGGGATCAAGGTTATCATGG 58 36582562 36582582 GCCGATATGATTCCTACACTC 58 NA Rattus norvegicus 81 Arih1 ENSRNOG00000009887 ENSRNOT00000084758 2 1 2 147 8 64184098 64190009 TTTGGAATGTCCCAAATGCC 60 64179763 64183989 GTTACAGTTGTACCAGGCAG 59 NA Rattus norvegicus 81 Osmr ENSRNOG00000033192 ENSRNOT00000080677 2 1 2 84 2 56123074 56123092 ACATCTCAGCCAACAACAG 58 56121597 56123027 TCATGGACTTTACCATGTCC 57 NA Rattus norvegicus 81 Ppih ENSRNOG00000008489 ENSRNOT00000067943 2 1 2 81 5 138354326 138354344 GATTGGCTGGATGGAAAGC 59 138352975 138353584 TGGGAACATTCTCAATCTTCCT 60 NA Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000087293,ENSRNOT00000005328 2 2 5 80 X 26443840 26443954 ACTGCATTAGTGCTTACCC 58 26444267 26444286 CATGGGTTCGTAACCATAGG 58 NA Rattus norvegicus 81 Zdhhc20 ENSRNOG00000011024 ENSRNOT00000063962 2 1 2 87 15 38113513 38115028 GGGTGAATACATCAGAAGTATTGG 59 38113449 38113467 TTCACTGTCCAACAAACGG 59 NA Rattus norvegicus 81 Zdhhc20 ENSRNOG00000011024 ENSRNOT00000014820 1 1 2 163 15 38117329 38117347 ATTGGCGACAAGTCTTTGG 59 38113895 38115016 CCTCTGCAGTTTAGATCTTCTG 59 NA Rattus norvegicus 81 Mospd2 ENSRNOG00000003350 ENSRNOT00000084395 3 1 2 80 X 31179222 31179240 CAGTCTGATGCTGAAGGAC 58 31179282 31180272 AGTAAGCGATTGAGTTGTAGG 58 NA Rattus norvegicus 81 Ash1l ENSRNOG00000020386 ENSRNOT00000085690 1 1 2 80 2 188330260 188330283 GAAGAAAGAGAAGTTGGAGTACAC 60 188330319 188339651 ACGTAGACATCAACATGAATGG 59 NA Rattus norvegicus 81 Crnn ENSRNOG00000008721 ENSRNOT00000011762 3 1 1 60 2 193429284 193429304 CTGGAATATGAGTTTGCCGAC 60 193430060 193430078 CTTCATCCACAGTTGCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Rbm10 ENSRNOG00000008472 ENSRNOT00000011317 1 1 2 81 X 1766251 1769880 GAGCAAAGTGCAGAGATCC 59 1766188 1766206 AGGATTTGTTCCGCATCAG 58 NA Rattus norvegicus 81 Mier3 ENSRNOG00000013121 ENSRNOT00000087031,ENSRNOT00000017571 3 2 2 80 2 43290924 43290943 ACGCTACGATTACTTTGCTC 59 43290985 43291084 TCCATATAGTCCGTAACGCC 59 NA Rattus norvegicus 81 Gpm6b ENSRNOG00000004613 ENSRNOT00000086721 1 1 2 80 X 29639647 29639667 CTCAAAGAACCATCAGTACCG 59 29621492 29639605 CATTCGAAGCAACCTGGAC 59 NA Rattus norvegicus 81 Lrmp ENSRNOG00000029308 ENSRNOT00000049474 3 1 2 81 4 179412626 179417762 CAGAAACAAGTGAGGAACTGAG 59 179427530 179427548 GGAGGAGTGGAAACCTCAG 59 NA Rattus norvegicus 81 Far1 ENSRNOG00000013176 ENSRNOT00000076756,ENSRNOT00000018532 3 2 3 82 1 178391390 178391408 CTTGCAGATCTCGTTCCTG 58 178391451 178392029 TTTCTTGGTCTATTAACTCCGG 58 NA Rattus norvegicus 81 Stmn4 ENSRNOG00000053334 ENSRNOT00000084753,ENSRNOT00000091567 1 2 3 80 15 43020548 43020568 GAGACAGTGTAGGAGGAAAGG 60 43020610 43020949 ACCGTATCTGCCTGTTCTC 59 NA Rattus norvegicus 81 Negr1 ENSRNOG00000021410 ENSRNOT00000029312 1 1 2 92 2 263069233 263212031 GAGAAACAGTCCCTCCCTC 59 263212087 263212105 TACTTGACCTGTTGAGCCA 59 NA Rattus norvegicus 81 Rn60_X_0590.1 ENSRNOG00000051032 ENSRNOT00000076058 3 1 2 60 X 58181490 58181509 AACATTCAGGCACTAATGGT 58 58181267 58181286 TAACTGATGCATTGGACCAC 58 NA DesignNoJunction Rattus norvegicus 81 Macrod1 ENSRNOG00000021174 ENSRNOT00000091465,ENSRNOT00000028749 3 2 2 98 1 222319567 222319588 AGTATAAGAAGGACAAGCAGCT 59 222319647 222438073 AGTTGTTGGCAGCATTGAC 59 NA Rattus norvegicus 81 Mbtps2 ENSRNOG00000007644 ENSRNOT00000087898 2 1 2 80 X 40287437 40294559 GAAGAGGCTGGTATATGGC 58 40294602 40294621 CAAGAGGATTACTGGGAGGA 58 NA Rattus norvegicus 81 Mbtps2 ENSRNOG00000007644 ENSRNOT00000087898 3 1 2 80 X 40287437 40294560 GAAGAGGCTGGTATATGGCA 59 40294601 40294621 CAAGAGGATTACTGGGAGGAG 59 NA Rattus norvegicus 81 Sag ENSRNOG00000018185 ENSRNOT00000024733 2 1 3 98 9 94964407 94964425 CTAGGAGAGCTCACATCCA 58 94971878 94971931 TTCATCCTGGACACTCTGG 59 NA Rattus norvegicus 81 Pogz ENSRNOG00000053599 ENSRNOT00000084023 2 1 2 81 2 196013862 196013883 AATCAGTGATGTCATTGAGGAC 59 196013924 196019984 GACCAAAGTATTACCAGCGG 59 NA Rattus norvegicus 81 UST4r ENSRNOG00000049826 ENSRNOT00000050010 1 1 2 100 1 224340331 224340349 TATCATGGCCATGATGGCA 59 224321274 224340267 TAGCTGTTGCCCTTAACGT 59 NA Rattus norvegicus 81 UST4r ENSRNOG00000049826 ENSRNOT00000077408 3 1 2 100 1 224340331 224340349 TATCATGGCCATGATGGCA 59 224320085 224340269 ACTCTTTCCAACTTAACGTGG 59 NA Rattus norvegicus 81 Mark2 ENSRNOG00000021184 ENSRNOT00000091990 2 1 2 139 1 222530213 222531203 TTTGTCCGCAGAAATCTGTC 59 222527594 222527612 GCCTCCCGAAATTCTTCCT 60 NA Rattus norvegicus 81 Prl8a7 ENSRNOG00000016933 ENSRNOT00000022797 3 1 2 80 17 39509595 39510953 CAACATTCCTTCTGCAAACTC 58 39510995 39511013 ACATGCAGGAATTGATGCA 58 NA Rattus norvegicus 81 Dap3 ENSRNOG00000020373 ENSRNOT00000088327 3 1 2 120 2 188226433 188227395 ATGAGAAAGGCAGCATCTC 58 188226331 188226350 ATCAAATCTGGCCTTGAGAG 58 NA Rattus norvegicus 81 Cnksr2 ENSRNOG00000007014 ENSRNOT00000009802 3 1 2 94 X 39948657 39951445 CTTTAAAGGCCAGAGAAGGG 58 39951501 39951520 CATCTGCTTCCATTGTTGGA 59 NA Rattus norvegicus 81 Adgrb1 ENSRNOG00000029450 ENSRNOT00000015578 1 1 5 80 7 115787299 115787318 AACCAGACTTGTATCCTGTG 57 115790061 115792637 ATTCCATAACCTAGGGCCA 58 NA Rattus norvegicus 81 Dnajb8 ENSRNOG00000034088 ENSRNOT00000050584 1 1 1 65 4 120157484 120157502 GAACGGACATGAACGTGTG 60 120159004 120159022 GATCTTGGGATACCTGGCT 59 NA DesignNoJunction Rattus norvegicus 81 Ankrd6 ENSRNOG00000007110 ENSRNOT00000088179,ENSRNOT00000081748 3 2 3 80 5 48058407 48058425 GAATGTCTGAATCGCCTGC 59 48057249 48058365 TTCATCCACCAATGACATCTG 58 NA Rattus norvegicus 81 Npm1 ENSRNOG00000004616 ENSRNOT00000006591,ENSRNOT00000064744 3 2 2 80 10 18084110 18084785 AGGTCAAAGGGTCAAGAGTC 59 18084049 18084070 AATGTCTTCTACAGAGCTAGGT 59 NA Rattus norvegicus 81 Npm1 ENSRNOG00000004616 ENSRNOT00000006591 2 1 2 80 10 18082220 18082238 CTCTTCCCAAAGTGGAAGC 59 18081283 18082177 GATCTTGAATAGCCTCCTGG 58 NA Rattus norvegicus 81 Kcnq1 ENSRNOG00000020532 ENSRNOT00000087153 1 1 4 91 1 216566192 216575289 GGAAGACAAGGGAGACCAG 59 216575342 216575362 CCTCGTATTCCTCTTCCTCTC 59 NA Rattus norvegicus 81 Prl4a1 ENSRNOG00000016436 ENSRNOT00000087424 2 1 2 83 17 38716056 38718296 CAATGGTCCTCCTGGACAG 60 38715991 38716011 TTTAGCTCTCATAGCAGAGGC 60 NA Rattus norvegicus 81 Cyp2b3 ENSRNOG00000033164 ENSRNOT00000077725,ENSRNOT00000034845 3 2 2 80 1 83210491 83210509 TTCTCCAATGGGTTTGCCA 60 83210552 83210738 TACACCTCAGTGTTCTTGGG 59 NA Rattus norvegicus 81 Dock4 ENSRNOG00000004823 ENSRNOT00000006709 1 1 2 85 6 60774236 60776007 TGAGAAAGCTGTGAATCCC 58 60776056 60776074 TAAGTTTCCCACTGTCCGA 58 NA Rattus norvegicus 81 Dock4 ENSRNOG00000004823 ENSRNOT00000006709 3 1 2 86 6 60774235 60776007 CTGAGAAAGCTGTGAATCCC 59 60776056 60776074 TAAGTTTCCCACTGTCCGA 58 NA Rattus norvegicus 81 Esrp1 ENSRNOG00000008184 ENSRNOT00000010846 2 1 2 80 5 24599347 24602719 AAGTTACCATGCCTGTCTCC 60 24599286 24599305 CTGATAAATGGCAGCTTCGG 60 NA Rattus norvegicus 81 Hdgf ENSRNOG00000042261 ENSRNOT00000065211 3 1 2 96 2 187282004 187282026 CTGATGTCTCCCAGTCCTC 59 187282086 187282104 GCATTGCCCTTCTTGTCAC 60 NA Rattus norvegicus 81 Hdgf ENSRNOG00000042261 ENSRNOT00000017234 3 1 2 83 2 187275409 187275428 CAGAAAGAGTACAAGTGCGG 59 187275474 187281075 AGGCATCTCATCAATCCGG 60 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000089534,ENSRNOT00000037255,ENSRNOT00000015386 1 3 10 80 2 231232010 231232932 TGTCAGAGGTGACTTTGTCC 60 231231949 231231967 CTCTACGGCCTTCTACTGG 59 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000089534,ENSRNOT00000080470 1 2 10 80 2 231250894 231255694 AACAGCAACAAGATGATGAGAC 59 231250835 231250859 CTAAGACAGGAACTTCATTAACCAG 60 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000076734,ENSRNOT00000087781,ENSRNOT00000078903,ENSRNOT00000027487 2 6 7 103 1 215610835 215610853 GAACTCTGCAAACAACTGC 58 215610920 215611166 TTCATGTCTTCCAGCTCCT 58 NA Rattus norvegicus 81 Gspt1 ENSRNOG00000046271 ENSRNOT00000091610,ENSRNOT00000074487,ENSRNOT00000003213 1 3 3 88 10 4345458 4345477 TTTAAGGACAGCAGGAACCA 59 4345523 4445725 TGGTCTTACCTTCATCTCTTAAGG 60 NA Rattus norvegicus 81 Xrra1 ENSRNOG00000026503 ENSRNOT00000031908,ENSRNOT00000087818 1 2 2 80 1 164869915 164873138 CTGCCTCTAGATGTCTTTCAC 58 164873178 164873198 CACATAGACCATCTTGATGCC 59 NA Rattus norvegicus 81 Xrra1 ENSRNOG00000026503 ENSRNOT00000087818 2 1 2 80 1 164913375 164913557 AAGAGAAGAGGGTTGCGAG 59 164913599 164913619 TGCGAATGAGGATATCATCCA 59 NA Rattus norvegicus 81 Slc7a1 ENSRNOG00000000924 ENSRNOT00000082850,ENSRNOT00000001234,ENSRNOT00000089804 3 3 3 80 12 8091946 8091966 TTTGTGAAAGGCTCCATTGAG 59 8092007 8094726 CACGTTTGTGTCATTGTTCC 58 NA Rattus norvegicus 81 Ptpn6 ENSRNOG00000014294 ENSRNOT00000079947 3 1 3 128 4 157251836 157252564 TGTCTATAAAGTGGTTTCACCG 59 157251729 157251747 CTGAGAGGGAGAAGTCACC 59 NA Rattus norvegicus 81 Epb41l3 ENSRNOG00000016724 ENSRNOT00000022849 2 1 4 130 9 117636938 117647721 AGGAAGAGACTGACAGTGAG 59 117651180 117651199 TTTCACCAGCTCATCTTGAG 58 NA Rattus norvegicus 81 LOC100912391 ENSRNOG00000043233 ENSRNOT00000066095,ENSRNOT00000075589 2 2 2 80 7 15199961 15199981 GTCTTATTAATCTCCCGCTGC 59 15199808 15199920 GACACAGATGTTCCCTTTGG 59 NA Rattus norvegicus 81 Lrfn5 ENSRNOG00000005550 ENSRNOT00000007600 2 1 2 81 6 83426449 83426467 AAAGAGCACATACCAAGCC 58 83431900 83438231 TATATGGACTCCAGCCTCTG 58 NA Rattus norvegicus 81 Cryaa ENSRNOG00000047175 ENSRNOT00000071248 3 1 2 88 20 10438682 10440056 CATCTCTGAGGTCCGATCTG 60 10440107 10440125 GTACCTTCACGGTGAGGTC 60 NA Rattus norvegicus 81 Pdzd9 ENSRNOG00000016292 ENSRNOT00000079335 1 1 2 80 1 190592688 190592707 TACAGATACTGAGGGAACCA 57 190591277 190592645 ATCAGAACATCACCCTCCA 58 NA Rattus norvegicus 81 Mapk14 ENSRNOG00000000513 ENSRNOT00000000618 1 1 2 80 20 5975614 5975632 TGGATATTTGGTCCGTGGG 60 5975672 5983758 GATCAATATGGTCTGTACCAGGA 60 NA Rattus norvegicus 81 P4ha2 ENSRNOG00000033663 ENSRNOT00000077185 1 1 2 175 10 39459276 39461609 TATGAGTGATGTTGAAGCTGGT 60 39462055 39463631 TATTGGAGACCCACTTGCAG 60 NA Rattus norvegicus 81 Zfp384 ENSRNOG00000017066 ENSRNOT00000081640,ENSRNOT00000023192,ENSRNOT00000055985,ENSRNOT00000023240,ENSRNOT00000036654 3 5 6 93 4 157550395 157550419 TCACTAGAGGCTCATTTATCTACAC 60 157550464 157551050 GATATGTTTCTGATGTATATGCCCG 60 NA Rattus norvegicus 81 Extl3 ENSRNOG00000013581 ENSRNOT00000018583,ENSRNOT00000077197 3 2 2 80 15 48427741 48427761 GCTCTACAACTCCAACTACTC 58 48425582 48427700 AGGTAGGCGTAATACTTGTG 57 NA Rattus norvegicus 81 Fhl4 ENSRNOG00000006998 ENSRNOT00000009162 1 1 1 130 7 26144352 26144370 TTTAGCTGCTGCCCTAAGG 60 26141371 26141390 GTCGTGTTGAATCAGGAGTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mmd ENSRNOG00000002436 ENSRNOT00000087765,ENSRNOT00000086969 1 2 3 111 10 77755423 77763104 TTCCAGCGTTTCATGAACC 59 77765228 77765246 CAATGGCTGGAACGATGAG 59 NA Rattus norvegicus 81 Map2k7 ENSRNOG00000001047 ENSRNOT00000084460,ENSRNOT00000061821 2 2 2 80 12 2549754 2549772 GAGAAGCTGAAGAAACGGA 58 2549601 2549710 CAATGCTTTCACAATCGCC 58 NA Rattus norvegicus 81 Desi2 ENSRNOG00000004524 ENSRNOT00000005967 1 1 2 83 13 96112231 96141611 CGTCTACGACATGTACTGG 58 96141655 96141676 CTGCCATATACTTCAATTCCAG 57 NA Rattus norvegicus 81 Lgals7 ENSRNOG00000020380 ENSRNOT00000084393,ENSRNOT00000027620 2 2 2 114 1 87046662 87047023 GGCTTCAAGACTGTGATCG 59 87047101 87047119 TCTTCACAGAATGCAGCTG 58 NA Rattus norvegicus 81 Ppp3cc ENSRNOG00000009745 ENSRNOT00000082505 1 1 4 81 15 51915323 51915347 CACAGAGATGTTGGTCAATATTCTC 60 51903552 51915284 AACTGAAGTGGCTCCTTCC 60 NA Rattus norvegicus 81 Gucy1b2 ENSRNOG00000009440 ENSRNOT00000012948 1 1 3 89 15 45545051 45550201 TGTATGGATTCATCAACACCTG 59 45536002 45545001 CTTCTGCAGAAGCCTTCAG 59 NA Rattus norvegicus 81 Slc17a3 ENSRNOG00000032745 ENSRNOT00000080684 3 1 4 81 17 43537173 43537191 CCTACAAGTGAGCAGTGTG 58 43534635 43537130 TGATGGAATTCTGTGCTTTCC 59 NA Rattus norvegicus 81 Wnk2 ENSRNOG00000016684 ENSRNOT00000084304 1 1 2 81 17 16015793 16015811 AAGAGCAAATTGAAGGCGG 59 16015856 16016873 ACAAATGACCTGTGCTGGA 60 NA Rattus norvegicus 81 Ddx56 ENSRNOG00000004670 ENSRNOT00000089384,ENSRNOT00000006642 3 2 2 84 14 86377162 86379589 TCTCTAGAAAGGCTAAGAAGGTG 59 86377100 86377118 TTTGCTGTGGGTTTAGGCT 60 NA Rattus norvegicus 81 Sf3a3 ENSRNOG00000007629 ENSRNOT00000085986,ENSRNOT00000010373 2 2 3 80 5 142707165 142707183 GGTCGCTACCTTGATCTCC 60 142707222 142710283 GTATGTGATGTAATCCAGCTTCTC 60 NA Rattus norvegicus 81 Sf3a3 ENSRNOG00000007629 ENSRNOT00000010373 3 1 3 86 5 142717682 142717702 AGATTGAAGATGCTGTCTCCT 59 142721317 142722103 CATATTCTTCCTCGGTGTCAG 58 NA Rattus norvegicus 81 Hsf2bp ENSRNOG00000001193 ENSRNOT00000001580,ENSRNOT00000079207 1 2 2 80 20 10759193 10794920 GTGGCTTCTGAGTGATCCA 59 10759131 10759150 ACGTCTGGTTCTAGAACCAC 60 NA Rattus norvegicus 81 Hsf2bp ENSRNOG00000001193 ENSRNOT00000001580,ENSRNOT00000079207 2 2 2 80 20 10830405 10830425 CTGAGATTGGACTGTGAACAC 59 10820970 10830365 CAACTTCTCCTTCTTCTCCCT 59 NA Rattus norvegicus 81 Bicd2 ENSRNOG00000016031 ENSRNOT00000090647,ENSRNOT00000048653 1 2 2 80 17 15691886 15691906 TGTCCTTATCAACACTCAGTC 58 15686210 15691845 TCCACATTCTGGTTGATCTC 57 NA Rattus norvegicus 81 Nvl ENSRNOG00000003629 ENSRNOT00000004927,ENSRNOT00000086888 1 2 2 80 13 99458244 99459399 GATCCACAGTCAGCAAATCAC 60 99458184 99458205 AGTGGTTGAAACAGAATCAGAG 59 NA Rattus norvegicus 81 RGD1560146 ENSRNOG00000026169 ENSRNOT00000077492,ENSRNOT00000036030 1 2 2 80 5 115350462 115350480 GTGTAGACTGCCTCAACCT 59 115343914 115350420 TAGACATGATCTTGGGCAGAG 59 NA Rattus norvegicus 81 RGD1560146 ENSRNOG00000026169 ENSRNOT00000077492,ENSRNOT00000036030 3 2 2 80 5 115371670 115387278 CCAATGATTAGGCAGAACGA 58 115371609 115371628 CTGCCTTGAGTAATCAGTCC 58 NA Rattus norvegicus 81 Brd7 ENSRNOG00000014419 ENSRNOT00000086560 1 1 2 80 19 19673486 19677320 GGAGGAGAGTCAAGGAGGA 60 19677361 19677382 CATGACACTGGAGATCTTTGTC 59 NA Rattus norvegicus 81 Rmdn1 ENSRNOG00000025145 ENSRNOT00000092054 1 1 2 80 5 33603247 33637907 GAAGAAGATAAACAGAGACTCTGG 59 33637943 33637964 TCTATCCTCATGTATCTTGCCA 59 NA Rattus norvegicus 81 Arc ENSRNOG00000043465 ENSRNOT00000076998 3 1 2 147 7 115908655 115908673 CTACAGACACAGCAGATCC 57 115908283 115908545 CACTGGTATGAATCACTGGG 58 NA InUTR Rattus norvegicus 81 Nedd9 ENSRNOG00000014548 ENSRNOT00000078310 1 1 3 86 17 23074729 23136875 TGTCTGAGAATCTTATGGCGA 59 23136923 23136941 TCAAGATGTCTCCCTTGCG 60 NA Rattus norvegicus 81 RT1-M3-1 ENSRNOG00000000763 ENSRNOT00000080622 3 1 2 72 20 1815093 1815111 ATAGGCATGCTCTGATGCT 59 1814878 1814896 AACAGACTCAGTCCCACAC 59 NA DesignNoJunction Rattus norvegicus 81 Yes1 ENSRNOG00000037227 ENSRNOT00000056250 2 1 3 93 9 121862890 121873382 GTATCCAGGTATGGTAAACCG 58 121873437 121873455 TTCATGGAGGGATTCTGGG 59 NA Rattus norvegicus 81 Slc16a6 ENSRNOG00000000245 ENSRNOT00000088215,ENSRNOT00000045902,ENSRNOT00000078059 3 3 3 93 10 97738229 97741255 CTTTCGCACCAGCTATCAC 59 97738154 97738173 CAGACCATGACATTCAGCTG 59 NA Rattus norvegicus 81 Rai14 ENSRNOG00000028872 ENSRNOT00000040348 3 1 2 81 2 60562467 60562487 GCTCAGAAAGAAGTGGAACTC 59 60561385 60562426 GAAGACACATCACTCAACTGG 59 NA Rattus norvegicus 81 Dync1li2 ENSRNOG00000025791 ENSRNOT00000076742,ENSRNOT00000034472,ENSRNOT00000076353 1 3 4 113 19 758317 758338 GCTTCTTCAATAGTCTGTTGAG 57 760000 760019 GAACGTTTGACAACACAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Prl3a1 ENSRNOG00000017103 ENSRNOT00000023063,ENSRNOT00000077923 2 2 2 80 17 42736622 42736642 CTCTTTGACCATGCTATTGTC 57 42726718 42736581 AAATGCATACCCAAACTCCT 58 NA Rattus norvegicus 81 LOC690096 ENSRNOG00000009240 ENSRNOT00000012255 3 1 1 89 14 107349704 107349722 CCGAAAGAACAAGTACCGC 59 107349875 107349893 CTTTGAAGGATGGCACTGG 59 NA DesignNoJunction Rattus norvegicus 81 AABR07033745.3 ENSRNOG00000057967 ENSRNOT00000042713 2 1 2 80 11 38677456 38678003 ACACAATATAATGCCGACCTC 58 38677396 38677416 GCTGACATTTCCTTCTTTCTG 58 NA Rattus norvegicus 81 Cd84 ENSRNOG00000022884 ENSRNOT00000078162 3 1 2 84 13 90275160 90276015 AAGGAGAGCAGATGATGTCTC 59 90276056 90276079 ATCATAGATTCTGGACTCTGTGAG 60 NA Rattus norvegicus 81 Tpk1 ENSRNOG00000029922 ENSRNOT00000048203 2 1 1 80 4 72874363 72874381 TGGTGTGGCCTTATTCCTG 60 72794799 72874321 CACATCATTTGTGAGGTTCCA 59 NA Rattus norvegicus 81 Pttg1ip ENSRNOG00000001223 ENSRNOT00000001638 3 1 1 88 20 11763523 11763541 TGGGTGATGTTCCTCAGTG 59 11758933 11763471 GTGTACTCAGAGCAACCCA 59 NA Rattus norvegicus 81 AABR07067765.1 ENSRNOG00000054379 ENSRNOT00000091519,ENSRNOT00000085744 3 2 2 80 9 61922577 61922597 TAGAGATTGCACAAGATGGAG 58 61916075 61922535 GGTCAGAATAAGGCTCTGG 57 NA Rattus norvegicus 81 Hnrnpab ENSRNOG00000003645 ENSRNOT00000033056 2 1 2 80 10 34957454 34957472 CAACAGCAGTATGGCTCTG 59 34956305 34957412 ATTTGTACTACCCTGACCTCC 59 NA Rattus norvegicus 81 Hnrnpab ENSRNOG00000003645 ENSRNOT00000004885 3 1 2 84 10 34956316 34956600 GGCTACGACTACAGTCAGG 59 34956250 34956274 CTCAGTATGGCTTGTAGTTATTCTG 60 NA Rattus norvegicus 81 Arhgap17 ENSRNOG00000013836 ENSRNOT00000031770 2 1 3 86 1 193239867 193246176 AGAATCGTCACTGACACCA 59 193239799 193239818 TTCTTTGCTTGCCAAGTCTG 59 NA Rattus norvegicus 81 Adgrg2 ENSRNOG00000032472 ENSRNOT00000058834 3 1 3 121 X 36969077 36974124 TTGTTGTCACCATCTGATGC 59 36964783 36964807 CAGATATTTCTCTGGGATTTGACTC 60 NA Rattus norvegicus 81 Rac1 ENSRNOG00000001068 ENSRNOT00000001417 1 1 2 113 12 13101945 13101966 TGCCAATGTTATGGTAGATGGA 60 13102040 13109083 AAGAACACGTCTGTTTGCG 59 NA Rattus norvegicus 81 Nhp2 ENSRNOG00000049622 ENSRNOT00000073317,ENSRNOT00000090404 1 2 2 80 10 37069723 37069743 GTAAAGCAGAAGCAGATTCGT 59 37069783 37071923 CAAGACCATGATCCCTTTCTC 59 NA Rattus norvegicus 81 Mipep ENSRNOG00000013876 ENSRNOT00000018845 3 1 2 82 15 41104123 41104146 CAAACCTAGTAGGCTATCTACCT 59 41109164 41109182 AAGGAACTGCATGACAGTC 58 NA Rattus norvegicus 81 Aldh3b1 ENSRNOG00000017512 ENSRNOT00000023789,ENSRNOT00000085312 1 2 2 80 1 219155226 219155245 AATTGAGTTCATCAACCGGA 58 219152519 219155184 AACACCTGTTTGATGACCTG 58 NA Rattus norvegicus 81 Aldh3b1 ENSRNOG00000017512 ENSRNOT00000085312 2 1 2 132 1 219162341 219181527 GACAAGGCAGAATGGACTC 58 219162227 219162246 TTGTTGTCTCTGAGGAAGTG 58 NA Rattus norvegicus 81 Abcc9 ENSRNOG00000036960 ENSRNOT00000067489 3 1 2 93 4 176811203 176811758 AACCATAGCTCACCGTGTC 60 176811128 176811146 GTTTGGACCAGTATCGCAC 59 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000042251 1 1 6 80 6 4315605 4315626 TCTTCATTGAGATTGGAGAACC 58 4303097 4311882 CATCGTACTCCTCTGTTAATGTG 59 NA Rattus norvegicus 81 Pex19 ENSRNOG00000057116 ENSRNOT00000085377 3 1 2 80 13 90521513 90521532 GGTACTCGATCTTATGCAGC 58 90522277 90527719 GAAGGTCCAGTGTACATCTC 58 NA Rattus norvegicus 81 Gsto2 ENSRNOG00000012801 ENSRNOT00000017186,ENSRNOT00000076251 2 2 4 80 1 267625417 267625437 AATCTACAGCATGAGGTTCTG 58 267625478 267627769 ATGATTTCATGCCTGATGCT 58 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 1 10 10 73 18 30188422 30188440 GTATCCAGTGCAACACCAG 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Zp3r ENSRNOG00000025862 ENSRNOT00000035577,ENSRNOT00000049915 3 2 2 81 13 47296224 47296244 GCAAATGTTCACGATGTTCAG 59 47294582 47296181 AACATACCCTTTCGCATCC 58 NA Rattus norvegicus 81 Ceacam1 ENSRNOG00000020578 ENSRNOT00000027933 1 1 4 80 1 82331121 82338619 AAGCTGGACGTAATACATCTG 58 82329992 82330013 GAAGTTCAGGACAGAGTATGAG 58 NA Rattus norvegicus 81 Dixdc1 ENSRNOG00000010260 ENSRNOT00000083102 1 1 2 80 8 55110322 55110340 TGGATCTAGAACGGGAGCT 60 55109474 55110281 AATTTGTCACCTCATCTGTGTC 59 NA Rattus norvegicus 81 Hr ENSRNOG00000011427 ENSRNOT00000082639,ENSRNOT00000015716 1 2 2 80 15 52257009 52259309 GCTTTCTCCAGATGGTGTG 59 52259353 52259371 ACCCTGAATCCAAGTAGCA 58 NA Rattus norvegicus 81 LOC100364194 ENSRNOG00000042868 ENSRNOT00000066895 3 1 2 81 10 82492813 82492837 GTAAGAAAGACTTCTGAGTCTTTGG 60 82489529 82492775 CATGGTATTGTCTGCAGGGA 60 NA Rattus norvegicus 81 Rab8a ENSRNOG00000014621 ENSRNOT00000020748 2 1 2 90 16 19366508 19369072 TGCAGATATGGGACACAGC 60 19363173 19363192 TCGTAGACCAGCATGATACC 59 NA Rattus norvegicus 81 Gprc5b ENSRNOG00000016013 ENSRNOT00000082192 3 1 2 134 1 188693807 188693825 GCTTGGAGCAAAGATCCAG 59 188692426 188693709 CAGTTGGGATAGTCCCACC 60 NA Rattus norvegicus 81 P2rx2 ENSRNOG00000037456 ENSRNOT00000085661,ENSRNOT00000056694,ENSRNOT00000081447 3 3 5 81 12 52398988 52399108 TTCTCAAAGGGCAACATTGC 60 52399151 52399170 GACAGTATGGGTCAGAGTCC 59 NA Rattus norvegicus 81 Carf ENSRNOG00000017491 ENSRNOT00000087194 3 1 2 99 9 66902391 66903406 GTGTAGTCCTCCAGGTGTC 59 66903469 66903487 AAGACTGTAGCTACTGGCG 59 NA Rattus norvegicus 81 Atp6v0a1 ENSRNOG00000036814 ENSRNOT00000055238 2 1 2 108 10 88952678 88952696 CAACTTTGGTGGGATCAGG 59 88952767 88959739 AAAGTCAAACTCTTCTGCGT 58 NA Rattus norvegicus 81 Arhgef9 ENSRNOG00000007733 ENSRNOT00000084678 2 1 5 114 X 64251121 64275842 AACAGAAAGGTGTCAACTCTG 59 64251027 64251045 AACACTTGAGACTGAGCGA 59 NA Rattus norvegicus 81 Stt3b ENSRNOG00000011922 ENSRNOT00000017243 1 1 2 80 8 123328891 123340924 CACTTACTACTTATGGGTGAAGTC 59 123328834 123328855 ATGTAGAAATACGACAAGCAGC 59 NA Rattus norvegicus 81 Grip1 ENSRNOG00000004013 ENSRNOT00000005545,ENSRNOT00000088861 2 2 4 80 7 64769248 64775469 AGATAAATGCAGCTCATGTGTC 59 64775510 64775528 CCTCTGTGGTTTCAGTGTG 58 NA Rattus norvegicus 81 Ppp1r11 ENSRNOG00000000780 ENSRNOT00000088757 1 1 3 80 20 2095464 2096767 ACCAAGGAAGGAGAATCGG 59 2096811 2096829 GTGTCACTTGACCACTCCA 60 NA Rattus norvegicus 81 LOC102553099 ENSRNOG00000049740 ENSRNOT00000083841,ENSRNOT00000073436 3 2 2 80 11 61467130 61468656 ACATCTATCTGCATGTCCAG 57 61467069 61467090 TAGTCTCGATAATCTCAAAGCC 58 NA Rattus norvegicus 81 Asns ENSRNOG00000007546 ENSRNOT00000010079,ENSRNOT00000083481 2 2 2 80 4 33750803 33750823 CAAATACCATCACTGTACGGA 58 33750510 33750761 TCTATCTCAAAGCCTGGGA 57 NA Rattus norvegicus 81 Znfx1 ENSRNOG00000008194 ENSRNOT00000055127 2 1 2 157 3 163808771 163811819 TACCAACCACAGAGGTCCT 60 163808632 163808651 TGCCCATAGCCCTAAATCTC 59 NA Rattus norvegicus 81 Spop ENSRNOG00000004686 ENSRNOT00000077625,ENSRNOT00000006230 1 2 2 80 10 83290704 83293634 AGCTGAAATGGTGTTTGCG 60 83293678 83293696 CCAACAACAGGTAGAGCGA 60 NA Rattus norvegicus 81 Cldn6 ENSRNOG00000003648 ENSRNOT00000004845 3 1 1 65 10 13000180 13000198 TCGGACAAAGCTGACTGAG 60 13001450 13001470 AGATTTGCAGACCAGTAGAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Kdm4b ENSRNOG00000049221 ENSRNOT00000089374,ENSRNOT00000071199 3 2 3 80 9 10710531 10710552 CAGGGACTTCAACAGATATGTG 59 10707666 10710490 TTGGGTGGGATGATCTTGG 59 NA Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000018185 3 1 5 81 7 120772270 120772288 CTCGGTTGAAGAGTACGTG 58 120771876 120772227 CAAATCTCAACACCTCTTTCC 57 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000052387 2 1 5 60 1 80531023 80531222 TTCCAAAGACAGTGTCTTGC 59 80530834 80530853 CTAAGTTGGGTCTGGAGTCC 60 NA DesignRelaxed Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000057802,ENSRNOT00000040060 2 2 5 81 1 80524477 80524496 CTATGGTGTGGACAAGAAGC 59 80524299 80524436 TTCAATTCCATGTGGATCAGAG 59 NA Rattus norvegicus 81 Gria1 ENSRNOG00000045816 ENSRNOT00000081136 1 1 3 80 10 42615749 42616242 GTTGACAGAAGAACCAGTTTCC 60 42618551 42618569 GATGTTGACAGCCGTTACC 59 NA Rattus norvegicus 81 Lefty2 ENSRNOG00000060325 ENSRNOT00000088654 3 1 2 266 13 99174516 99174534 GTCAGAGACCTCCAGTCAC 59 99175019 99175041 GTCACATCGAACTTCCAGC 59 NA DesignRelaxed Rattus norvegicus 81 Clps ENSRNOG00000000510 ENSRNOT00000000611,ENSRNOT00000085996 1 2 2 80 20 5804162 5805971 TTTATCAACCTGGAGGACGG 60 5804101 5804119 CAGGATGGTGTCATGTTGG 59 NA Rattus norvegicus 81 Rpp40 ENSRNOG00000016226 ENSRNOT00000068617,ENSRNOT00000021877 2 2 2 80 17 29646263 29646283 TGTCTGTGTACAATCACAGGT 59 29646322 29647503 TTCATCAAAGTAGTGACACAGC 59 NA Rattus norvegicus 81 Gria4 ENSRNOG00000006957 ENSRNOT00000081171 2 1 3 81 8 1586748 1586767 ATGAAAGTGGGAGGAAACCT 59 1554886 1586709 GGTTTACAGGAGTTCTTAATGAGG 59 NA Rattus norvegicus 81 Zfand4 ENSRNOG00000011791 ENSRNOT00000083563,ENSRNOT00000015742 2 2 2 80 4 148233572 148247007 ATCTTTAAGTGGTGGCTCTG 58 148247050 148247068 ATTTGTTGCCCAGAAGGAG 58 NA Rattus norvegicus 81 Nfya ENSRNOG00000012702 ENSRNOT00000091532 2 1 2 81 9 14568129 14568843 CCAGCAAGTTACAGTCCCT 59 14568887 14568906 TCCTGTCTGAACGATCTGTG 60 NA Rattus norvegicus 81 AABR07015956.1 ENSRNOG00000058316 ENSRNOT00000079338 3 1 1 70 14 87701356 87701374 AGGAGCACTTAACCGAGAG 59 87701052 87701070 TCCTGAAGAGACTGCTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Cacna1g ENSRNOG00000060528 ENSRNOT00000081307,ENSRNOT00000092024 1 2 2 80 10 82185688 82185872 CATCTTCCAGGTCATCACAC 58 82185627 82185648 ATGAAGTTGTAGAAGGAGTGAG 58 NA Rattus norvegicus 81 Cacna1g ENSRNOG00000060528 ENSRNOT00000092024 1 1 2 85 10 82144138 82146405 GAGAAGGAATCTAATGTTGGACG 59 82139448 82139466 AGTAGTAGGGCTTGCACTG 59 NA Rattus norvegicus 81 Cd244 ENSRNOG00000004698 ENSRNOT00000000053 1 1 2 80 13 89988831 89988850 GGATCTTCCTCAGATGTTCG 58 89988892 89990370 AGACCTGTTGATGAACTGGA 59 NA Rattus norvegicus 81 RGD1305455 ENSRNOG00000039214 ENSRNOT00000085853 1 1 2 80 12 19581315 19581334 ACAGATGAGGTCATCTTCCC 59 19581153 19581273 GGTCACTACAATCTTGGCCT 60 NA Rattus norvegicus 81 Zfp9 ENSRNOG00000006726 ENSRNOT00000065579,ENSRNOT00000079053 2 2 3 92 4 150520268 150520286 TTTACGTAGGAGCTGTGGT 58 150518987 150519522 TCTCCTTTCCTTGCAGTCC 59 NA Rattus norvegicus 81 Hfe ENSRNOG00000016967 ENSRNOT00000022881,ENSRNOT00000022809 1 2 3 131 17 43665868 43665886 CAAGATGGAGTGGGAAGAG 57 43665981 43666937 AAAGTAGGCACTTGCTGTC 58 NA Rattus norvegicus 81 Adam22 ENSRNOG00000042478 ENSRNOT00000068410 3 1 2 93 4 22970353 22970372 TAGGAATAATTGCTGGCACC 58 22975179 22982551 CCATTTGACCTCTGTTCTCG 59 NA Rattus norvegicus 81 Ugt2b35 ENSRNOG00000001980 ENSRNOT00000002712,ENSRNOT00000092201 2 2 2 81 14 22556093 22556113 CCAATATCGCCAAATGTTGAC 58 22556153 22557558 CGAAGTCTTCAATATCCTTGGG 59 NA Rattus norvegicus 81 Smc6 ENSRNOG00000004908 ENSRNOT00000007073,ENSRNOT00000083383 1 2 2 80 6 36949335 36951673 ATAATGGAAGTGGGAAGAGTG 58 36951713 36951733 ATCCTCTGTTAGTAGCAACTG 57 NA Rattus norvegicus 81 Cd86 ENSRNOG00000038835 ENSRNOT00000003129,ENSRNOT00000078936 3 2 2 81 11 67107554 67107572 TCTCTTTCTGCTGGTCGTC 60 67107617 67117870 AGTCTTTCTGCTGGGTCTG 59 NA Rattus norvegicus 81 Ccnjl ENSRNOG00000003893 ENSRNOT00000005171 2 1 2 80 10 29151026 29151044 AGTACAACGTCACCACCTC 59 29151085 29174570 CTCTGTCCTCAAACTTACTTGC 59 NA Rattus norvegicus 81 RGD1307603 ENSRNOG00000018287 ENSRNOT00000085439 3 1 2 80 1 219310115 219310241 ACTATCTCCATATCTGTAAGGAGG 59 219310058 219310079 GAAGAGTTTCAAATGGCTTCAG 58 NA Rattus norvegicus 81 LOC100361016 ENSRNOG00000021972 ENSRNOT00000046416 2 1 1 60 X 93065479 93065498 CTAAATTGGCAAGAGTCCCA 58 93065312 93065331 TATCTGACAGTGCCATAGGT 58 NA DesignNoJunction Rattus norvegicus 81 Pld1 ENSRNOG00000028156 ENSRNOT00000091545 1 1 3 80 2 113833223 113845508 GAGTGCTTCAGCTCTTGTG 59 113845549 113845570 CACTTACAGGATCCTGAATGTC 59 NA Rattus norvegicus 81 Nfia ENSRNOG00000006966 ENSRNOT00000087089,ENSRNOT00000086628,ENSRNOT00000080577,ENSRNOT00000004017 1 4 4 80 5 116637615 116652349 CTAGTAAGAGTGTCACAAACACC 59 116652383 116652407 GTATGAGGAACTTTCCAAATCAGAG 60 NA Rattus norvegicus 81 Tbx22 ENSRNOG00000002346 ENSRNOT00000003190,ENSRNOT00000083907 3 2 2 80 X 78770641 78770661 GGGATCTGACCTATGGAAGAG 59 78770702 78771473 GAAGGAAACATACGTCTGCC 59 NA Rattus norvegicus 81 Tia1 ENSRNOG00000016813 ENSRNOT00000023103 2 1 2 80 4 118230304 118230438 ACTGACAGAACAACTAATGCG 59 118230476 118230498 TACCCTTTATCTGGAAAGACTCG 60 NA Rattus norvegicus 81 Mamstr ENSRNOG00000024580 ENSRNOT00000029167,ENSRNOT00000029220 1 2 2 80 1 101625880 101626066 GAAGAGCTGACGGTCTCAG 60 101626110 101626128 CAGAAGCATCGCTTTGGTC 60 NA Rattus norvegicus 81 Ugt2b17 ENSRNOG00000001990 ENSRNOT00000002724,ENSRNOT00000089471 1 2 3 80 14 22734017 22734039 CTTCAGCATACTGTCAACTACAG 59 22734075 22735542 ATGGCATTCTCCTTATAGGAAGG 60 NA Rattus norvegicus 81 Nt5c1b ENSRNOG00000004296 ENSRNOT00000090438 2 1 2 81 6 36091140 36091475 TCTGAGCACTCAGATGAGG 59 36091518 36091538 TCTACAGAAGTGGTGATACCG 59 NA Rattus norvegicus 81 Ly6h ENSRNOG00000007334 ENSRNOT00000056554,ENSRNOT00000076014,ENSRNOT00000076009 2 3 3 162 7 116606958 116606976 TACTGGCCTTGCTTCTCTG 59 116606139 116606392 GAATGATCCTTCCTGCTGC 59 NA Rattus norvegicus 81 Avpr1a ENSRNOG00000004400 ENSRNOT00000087045 1 1 2 84 7 67341606 67341624 TCCAAAGTTTCCCATGCTG 58 67341538 67341560 AATAAGAAGTCTCTTCGGCTC 58 NA Rattus norvegicus 81 Rn60_20_0046.8 ENSRNOG00000058238 ENSRNOT00000082815 1 1 1 73 20 2541198 2541216 ATACACATGCCATGTGGAG 58 2541021 2541039 GCATACTGGACTGAGGAGG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1307554 ENSRNOG00000018408 ENSRNOT00000077968,ENSRNOT00000024829 1 2 2 80 1 84367073 84369903 AGTGACTATGGCCACTTCTG 60 84369946 84369964 ACAGCATAATTGACGGCAG 59 NA Rattus norvegicus 81 Cul2 ENSRNOG00000015292 ENSRNOT00000079607 1 1 2 80 17 56960377 56961141 CTGAACTGCTTGCTAAGTACTG 59 56960318 56960339 GCTTGTCCTCTACTTCATTCTC 59 NA Rattus norvegicus 81 Acot7 ENSRNOG00000010580 ENSRNOT00000000079,ENSRNOT00000014213 2 2 2 80 5 169400329 169406759 TGCCTCCTATTGTGTATTTACG 58 169406800 169406818 CCATGCGTTCTAGCTTCTG 59 NA Rattus norvegicus 81 Ccdc85a ENSRNOG00000003374 ENSRNOT00000056813 3 1 2 81 14 112719622 112726627 GTGGTACATTCTCTTAAGGTTGTG 60 112719564 112719585 CTGACAGATGTTGCCTAATTCC 60 NA Rattus norvegicus 81 Rhot1 ENSRNOG00000004093 ENSRNOT00000082685 2 1 4 81 10 67638218 67639569 TTTCTTGACAACAGGCACG 59 67639614 67639632 AGACAGTAGCACCAAAGCT 59 NA Rattus norvegicus 81 Dnaaf5 ENSRNOG00000021312 ENSRNOT00000035545,ENSRNOT00000088813 2 2 2 80 12 17551288 17551307 GTATCATCAGCAGGTTCCTC 58 17547979 17551246 TCAAGAGCTCAGGATAGACC 58 NA Rattus norvegicus 81 Mxra7 ENSRNOG00000042915 ENSRNOT00000066137 3 1 2 89 10 105752611 105752629 TTTAAGTACAGCCCTGGGC 60 105751466 105752559 CAGCTCAATCCTCTGTTCCT 60 NA Rattus norvegicus 81 Chpf2 ENSRNOG00000010466 ENSRNOT00000014082 1 1 2 81 4 7112384 7112405 GATGAAGACTTCAAACCTAGGA 58 7111902 7112342 TATACCGAGTCCTGAGCAC 58 NA Rattus norvegicus 81 Chn2 ENSRNOG00000009411 ENSRNOT00000012655 1 1 2 121 4 84424009 84424819 CGATAAATATCTCTTCACTGGTCC 59 84439754 84439772 GTATTCACACCAGTGTGGG 58 NA Rattus norvegicus 81 Maged1 ENSRNOG00000006756 ENSRNOT00000076858 3 1 5 81 X 63806025 63806049 AGAGATATCATCCGAGAATACACTG 60 63805593 63805988 ACCAATTTAGCTTCTCCAGGA 59 NA Rattus norvegicus 81 Mphosph8 ENSRNOG00000051238 ENSRNOT00000028145,ENSRNOT00000076474 3 2 2 80 15 36940144 36940163 CTGTACTTTGCAAAGCAGTG 58 36940206 36942785 TGCAACTCTTGAAAGGGTC 58 NA Rattus norvegicus 81 Ccnt2 ENSRNOG00000017113 ENSRNOT00000024602,ENSRNOT00000091645 1 2 2 80 13 44504938 44504959 AAATGCACCCAGTTAGTAAGAG 59 44507346 44508911 CGTAAGATGCAAACTGTTGG 58 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000078463,ENSRNOT00000058735 3 2 11 98 6 99141820 99141838 CCCTCTTGAGTGGGATCAC 60 99141898 99142441 ATTTCTACATCTGACAGTGCG 59 NA Rattus norvegicus 81 Htr4 ENSRNOG00000019134 ENSRNOT00000025871 2 1 3 80 18 57755779 57819618 CACTCATGTGCTAAGGTATACAG 59 57819657 57819676 TCTGGGTCATTGTGTATGGG 60 NA Rattus norvegicus 81 Chm ENSRNOG00000000161 ENSRNOT00000088570 3 1 2 82 X 84767704 84768420 GACTAGATAACTGGCTGAAACTG 59 84767078 84767099 TTCAAGTATCTGTTCTTGCCAC 59 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000076913,ENSRNOT00000028219,ENSRNOT00000075879,ENSRNOT00000088037 1 4 6 80 15 36972824 36976235 CATGGGAGATGCATTTAGCC 59 36972763 36972786 CCTCTGTTGTTCATATTCATACCC 59 NA Rattus norvegicus 81 Zmynd11 ENSRNOG00000014670 ENSRNOT00000045183 1 1 2 80 17 63838774 63860386 GTTACCAGGAGATGAGATTAGCA 60 63838716 63838734 GAGACGATGAACCTCAGGT 59 NA Rattus norvegicus 81 Magi1 ENSRNOG00000022060 ENSRNOT00000083271,ENSRNOT00000037848,ENSRNOT00000071315 2 3 3 86 4 125694243 125694261 ACTGCTGACTAATGCGGAG 60 125694034 125694193 GTGGTGGTCCTTGTTTCCT 60 NA Rattus norvegicus 81 Taf9 ENSRNOG00000051258 ENSRNOT00000076294,ENSRNOT00000076434,ENSRNOT00000076484,ENSRNOT00000076061 3 4 5 89 2 30666639 30667390 GATCTAGCTCGGGAAGTCTG 60 30667441 30667460 CATCATCTGTGCGTCTTTCG 60 NA InUTR Rattus norvegicus 81 Pfkm ENSRNOG00000057988 ENSRNOT00000088376,ENSRNOT00000078579 2 2 2 80 7 139715019 139715446 GGCCAAAGGTCAGATTGAG 59 139715487 139715508 TTAGTACCAAGTTTGGAACCAC 59 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245 3 2 6 86 14 44526913 44527306 TTCAAATTCAGCGGCTCTG 59 44527353 44527374 TCAGAAACATAGATGCCATCCA 60 NA Rattus norvegicus 81 Batf2 ENSRNOG00000021018 ENSRNOT00000028527 3 1 1 61 1 221538175 221538193 CAACTCTGTGGGAGTGGAG 60 221540474 221540493 AGCTGTTTCTGAGACTCCTC 59 NA DesignNoJunction Rattus norvegicus 81 Elf1 ENSRNOG00000011762 ENSRNOT00000068269 1 1 3 82 15 61847334 61852607 ATCACCCTTACAGTCGAGG 59 61852653 61852671 ATATTGAGGAGCGCCTCAG 59 NA Rattus norvegicus 81 Synj2 ENSRNOG00000017114 ENSRNOT00000066798,ENSRNOT00000067661 1 2 3 81 1 46929512 46931334 CAGGAAAGCCCATGTTATCAG 59 46931376 46931395 TCAAGGTTCATTTCCTGGGA 59 NA Rattus norvegicus 81 Synj2 ENSRNOG00000017114 ENSRNOT00000066798,ENSRNOT00000067661 3 2 3 84 1 46929512 46931334 CAGGAAAGCCCATGTTATCAG 59 46931378 46931398 GTCTCAAGGTTCATTTCCTGG 59 NA Rattus norvegicus 81 Nr1d2 ENSRNOG00000046912 ENSRNOT00000071751 1 1 2 95 15 8746187 8746208 TTGCAAAGGGAAGTGATTGG 59 8746266 8746284 TGGCATGCTCTCAGATGAG 60 NA Rattus norvegicus 81 Tbce ENSRNOG00000029667 ENSRNOT00000040743,ENSRNOT00000079433 2 2 2 80 17 54021140 54021160 ACTAGACCTTTCTTCCAACCC 60 54021198 54021654 AGTAGGTGTTCTAATCTTGGGAG 59 NA Rattus norvegicus 81 Hnrnph3 ENSRNOG00000048193 ENSRNOT00000077525,ENSRNOT00000073617,ENSRNOT00000032600 3 3 3 110 20 27176418 27216222 GCAACATCGATACATTGAACTC 58 27216291 27216499 CCTCCTTGATTATCCATTCCA 57 NA Rattus norvegicus 81 Cep70 ENSRNOG00000022845 ENSRNOT00000056590,ENSRNOT00000081594 1 2 3 81 8 107522049 107525333 GGATAAACAGCAGTGTGGG 59 107525377 107525396 TTTATAGGTTGGTGAGACGC 58 NA Rattus norvegicus 81 Ptgis ENSRNOG00000008245 ENSRNOT00000010891 2 1 2 80 3 163969829 163972317 TGGGTGAGATGTTACCTGTG 60 163969768 163969787 ACACCACTGTGTCGTAAGAG 60 NA Rattus norvegicus 81 Piezo2 ENSRNOG00000038784 ENSRNOT00000065693 2 1 2 80 18 58366968 58368955 TTGTTTCAAGGGTTTCGTCTC 59 58366908 58366928 CAAGGTTGTATCTGTCCACAC 59 NA Rattus norvegicus 81 Rims3 ENSRNOG00000011171 ENSRNOT00000081333,ENSRNOT00000015033 1 2 2 80 5 139816389 139816407 CCAGCTGGAGGTAGAAGTG 60 139816450 139816729 TTGATATAGGTGGCTGGGAG 59 NA Rattus norvegicus 81 Esr2 ENSRNOG00000005343 ENSRNOT00000042682,ENSRNOT00000043602 2 2 4 88 6 99192274 99192293 TACCATAGACAAGAACCGGC 60 99184559 99192223 TCCTGGATCCACACTTGAC 59 NA Rattus norvegicus 81 Esr2 ENSRNOG00000005343 ENSRNOT00000042682,ENSRNOT00000043602 3 2 4 90 6 99192275 99192295 TGTACCATAGACAAGAACCGG 60 99184559 99192223 TCCTGGATCCACACTTGAC 59 NA Rattus norvegicus 81 Pitx2 ENSRNOG00000010681 ENSRNOT00000051009 1 1 2 80 2 233616179 233616197 GACGCCTCCAAACATAGAC 58 233616240 233617126 CTGGCCCTTATCTTTCTCTG 58 NA Rattus norvegicus 81 Napg ENSRNOG00000018914 ENSRNOT00000065802,ENSRNOT00000077726 3 2 2 80 18 58333471 58333489 AAAGCCAGCATGATGTACC 58 58333532 58333674 TTCTATGAGCTTTCCTGCTC 57 NA Rattus norvegicus 81 Mpo ENSRNOG00000008310 ENSRNOT00000065910 1 1 3 186 10 75089421 75094177 GCCTTTCAATGTCACAGGG 59 75094326 75095249 TGTGATGATCTGGACCATGG 60 NA Rattus norvegicus 81 Ghrhr ENSRNOG00000011808 ENSRNOT00000084855 3 1 4 80 4 85601302 85601451 ATCGAGAGTGAAGGTCCCT 60 85601489 85601513 TAGATAGGAAGAAAGAACAGATGGG 60 NA Rattus norvegicus 81 Dnajc5 ENSRNOG00000015202 ENSRNOT00000020581 1 1 2 114 3 177043142 177043592 GATGAGAGGGAGGCTACAG 59 177043670 177043688 TTTAGTTGAACCCGTCGGT 59 NA Rattus norvegicus 81 Krt81 ENSRNOG00000036871 ENSRNOT00000068748 1 1 2 80 7 143108237 143108259 GTGGCCGTAAATGTAAACTG 58 143108176 143108194 AATATTGGTCAGCCAGGGA 58 NA Rattus norvegicus 81 Krt81 ENSRNOG00000036871 ENSRNOT00000068748 3 1 2 80 7 143108234 143108256 GCCGTAAATGTAAACTGCCT 59 143108173 143108191 CCCAATATTGGTCAGCCAG 58 NA Rattus norvegicus 81 Dnal1 ENSRNOG00000042333 ENSRNOT00000076055,ENSRNOT00000036430 3 2 2 83 6 107621813 107621831 AGAAGCATTCTGCTGAGGG 60 107621877 107622953 TTACTGGAGTACCATCCAGC 59 NA Rattus norvegicus 81 Ptcd1 ENSRNOG00000000987 ENSRNOT00000060924 1 1 2 152 12 11223753 11226421 GAAGTCTTCAAGGTGTGGC 59 11226537 11226555 GATGGTCTCTTCCTGGGAC 59 NA Rattus norvegicus 81 Aqp1 ENSRNOG00000011648 ENSRNOT00000087191,ENSRNOT00000015692 2 2 2 140 4 85560618 85560636 TGAGATCATTGGCACCCTG 60 85560740 85561014 CCAGTGTAGTCAATGGCCA 60 NA Rattus norvegicus 81 Ttc39c ENSRNOG00000050949 ENSRNOT00000073509,ENSRNOT00000091424 3 2 2 80 18 4077879 4077900 CAGAATAACTCATACGTCCAGC 59 4077940 4078977 TCTTGCTACAGTCTCTGCTC 59 NA Rattus norvegicus 81 Tmem263 ENSRNOG00000006987 ENSRNOT00000009154,ENSRNOT00000083806 2 2 2 80 7 24660069 24668118 CGGTGATCATGAATCAGGC 59 24653190 24660026 CTTTCATTGACCCTTCTGGG 59 NA InUTR Rattus norvegicus 81 Fcer1a ENSRNOG00000009177 ENSRNOT00000083561 3 1 2 80 13 91736598 91737012 GCTCATATCTCTGGGTGGT 59 91735312 91735332 AGTATTCTAATCCACGGTGGG 59 NA Rattus norvegicus 81 Pla2g4cl1 ENSRNOG00000026764 ENSRNOT00000058334 2 1 2 80 1 75617133 75617155 TGAGGGTATCTAAGGAGAATGTG 59 75617195 75617868 TCCCATGTTTCCCAGTGAC 60 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000076035,ENSRNOT00000090799 2 2 6 80 5 47907011 47907031 GCACAAGTTATCCTTCCTCAG 59 47907071 47907162 TGAGCCTCTTCTAACAACCTC 60 NA Rattus norvegicus 81 Ttyh3 ENSRNOG00000055583 ENSRNOT00000079866 2 1 2 81 12 16107018 16107037 ATGCCAATTTCCAGAATCCC 59 16107081 16109722 ATGCTGGAGGTGTATGAGG 59 NA Rattus norvegicus 81 Epha10 ENSRNOG00000037340 ENSRNOT00000056496 2 1 2 80 5 142894420 142896726 TACTACGAGAAGGGTCAGAG 58 142896769 142896787 CTTCAGGTTGGTGACAGTG 58 NA Rattus norvegicus 81 Gbf1 ENSRNOG00000026048 ENSRNOT00000086041 3 1 2 81 1 265918032 265923320 GACCACATTCTTCTATGATGAAGAG 60 265923358 265923377 TGTCCCACTGTTTAAGACCT 59 NA Rattus norvegicus 81 Nfyc ENSRNOG00000010735 ENSRNOT00000056651,ENSRNOT00000078741 2 2 2 80 5 139711371 139711391 TTCCGAGTACAAGAACTACCA 59 139708846 139711331 TTCTGCACTGATCATCTTCAC 59 NA Rattus norvegicus 81 Elmsan1 ENSRNOG00000010653 ENSRNOT00000088712,ENSRNOT00000014158 2 2 2 80 6 107642172 107642835 ACCTATCACTACACAGGCTC 59 107642111 107642132 TTTCTTATAGATGGCAATGCCC 59 NA Rattus norvegicus 81 Kcnip2 ENSRNOG00000018018 ENSRNOT00000068278 3 1 4 93 1 262911974 262911992 GTTAAGGCCTCAACTCCGA 59 262912725 262913323 CATCCTCTACGCTGTCTGG 60 NA Rattus norvegicus 81 Krt5 ENSRNOG00000050420 ENSRNOT00000083956 1 1 3 80 7 143451765 143451783 AAGAACGACCAATCACGGA 59 143323596 143451721 ATCCTCGTACTTGGTCCTG 59 NA Rattus norvegicus 81 Nars ENSRNOG00000017852 ENSRNOT00000059162 2 1 3 80 18 60001430 60002478 GACATGGTTCTAGCAGAGC 58 60001368 60001388 AAATGGTTTCTCCTTGGTTCC 59 NA Rattus norvegicus 81 Nars ENSRNOG00000017852 ENSRNOT00000024264,ENSRNOT00000059162,ENSRNOT00000081014 2 3 3 80 18 59994486 59995704 CTTGTCAGATGACTTGTGTCAG 59 59994427 59994445 TTCAGTGTCCCGTATACCG 59 NA Rattus norvegicus 81 Rc3h1 ENSRNOG00000002750 ENSRNOT00000076355,ENSRNOT00000003689 3 2 5 80 13 78784577 78784595 CAGCTAAGCTTGGAACTGC 59 78784636 78785252 AGAACACTGGTTCTCCATACTC 60 NA Rattus norvegicus 81 Rc3h1 ENSRNOG00000002750 ENSRNOT00000003689 3 1 5 86 13 78775306 78775324 GATACCAACAGGTGGAGGG 60 78775372 78776014 GACTATAAGGAGGATCCCTGG 59 NA Rattus norvegicus 81 Gtf2ird2 ENSRNOG00000001482 ENSRNOT00000002030 1 1 3 84 12 25511226 25513252 ACTTGAACTCAGTAATGTGGG 58 25511162 25511180 GAAGAAATACGCTCGCTCC 59 NA Rattus norvegicus 81 Tnr ENSRNOG00000002468 ENSRNOT00000003407,ENSRNOT00000080254 1 2 3 80 13 77639573 77639594 TATAGTGAATCTCGTAGCTGTC 57 77639633 77640776 GGAGGATCAATTCCTGTAGTG 58 NA Rattus norvegicus 81 Fam76a ENSRNOG00000011254 ENSRNOT00000066549 3 1 2 93 5 151114889 151116530 CGGACACTTGGTTGTTAAGTG 60 151113337 151113356 ATTCTGAGCACACTTCTTGC 59 NA Rattus norvegicus 81 Las1l ENSRNOG00000021748 ENSRNOT00000076543,ENSRNOT00000016042 3 2 3 80 X 65092893 65093233 CAAGACTGGACGAAATGCTC 59 65092832 65092851 GAAGAGCAATTGAACAGCCT 59 NA Rattus norvegicus 81 Krt76 ENSRNOG00000031785 ENSRNOT00000048613,ENSRNOT00000091817 3 2 3 80 7 143493425 143493809 TGAAGAAGGATGTGGATGGA 59 143493364 143493384 AGTTGATTTCATCAGTCAGGC 59 NA Rattus norvegicus 81 Ltbp2 ENSRNOG00000012094 ENSRNOT00000031331,ENSRNOT00000077458 1 2 3 80 6 108511886 108511904 GCTCCTTCAACTGTCTGTG 59 108506898 108511845 TTGCACATTCATCTATGTCCAC 59 NA Rattus norvegicus 81 Sec16b ENSRNOG00000005229 ENSRNOT00000044008,ENSRNOT00000007321 2 2 2 80 13 75187898 75192649 TACTATGGAAGGAAGAAGGAGG 59 75192689 75192708 CTTACTGGCTAGGAACAAGG 58 NA Rattus norvegicus 81 Asap1 ENSRNOG00000058733 ENSRNOT00000079981,ENSRNOT00000085650 1 2 3 80 7 104734585 104741516 GCTTGATCCGAAAGAAGACTC 59 104734525 104734543 CTGCCATACTCCTTGTTGC 59 NA Rattus norvegicus 81 Asap1 ENSRNOG00000058733 ENSRNOT00000079981,ENSRNOT00000085650 2 2 3 100 7 104734578 104741508 CGAAAGAAGACTCTCAGAGC 58 104734497 104734515 CTTCTTCAGCAGAAAGCCC 59 NA Rattus norvegicus 81 Cacna2d1 ENSRNOG00000033531 ENSRNOT00000082161 3 1 4 89 4 15741019 15742420 TCAGGCCAGATCAGAACAG 59 15740434 15740453 GGTGCTATGAAAGTGTAGCC 59 NA Rattus norvegicus 81 Cacna2d1 ENSRNOG00000033531 ENSRNOT00000042914,ENSRNOT00000090240 1 2 4 82 4 15742475 15748960 GATTACAGTTTGGCCTTGGT 59 15742412 15742431 CTGGCCTGAGTTATTGTCTC 58 NA Rattus norvegicus 81 Akap11 ENSRNOG00000009987 ENSRNOT00000058148,ENSRNOT00000079978 3 2 3 80 15 60750288 60750306 GAGCTGTGCAGTGTATCAG 58 60748352 60750246 AAAGCCCAGAAATGTGATCTC 59 NA Rattus norvegicus 81 Tnrc6a ENSRNOG00000024737 ENSRNOT00000086492 1 1 2 80 1 193131915 193132415 TCCTTACTTTGATAAGGATGGC 58 193132456 193132474 GGAAGCTTCATGCTTTGAC 57 NA Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000076709 1 1 5 80 X 71311566 71311584 TACAGAAGAGAAGCGAGCG 60 71310534 71311523 CAGATCTCCTGCTCTCAGTG 60 NA Rattus norvegicus 81 Alkbh8 ENSRNOG00000024525 ENSRNOT00000084222,ENSRNOT00000003432 2 2 2 80 6 18900542 18900561 ATTCCTGCCCATATTGACTC 58 18900603 18912487 ATCCATAACAATCGCTGACC 58 NA Rattus norvegicus 81 Stat6 ENSRNOG00000025023 ENSRNOT00000039306,ENSRNOT00000085350 2 2 2 80 7 70958859 70959142 CTTCTCTGAGATGGACCGA 58 70959184 70959204 TTGAGGTTCAGAGTTTCACAC 59 NA Rattus norvegicus 81 Lcn11 ENSRNOG00000047732 ENSRNOT00000084196,ENSRNOT00000050294 2 2 2 80 3 2937959 2938578 TTGTACCTGAACAGGTGAC 57 2937897 2937915 CATCTCCTTCCTCAACGAC 58 NA Rattus norvegicus 81 Actb ENSRNOG00000034254 ENSRNOT00000042459,ENSRNOT00000080216 1 2 2 80 12 13718208 13718317 CTTCCTGGGTATGGAATCCT 59 13718359 13718378 TCTTTACGGATGTCAACGTC 58 NA Rattus norvegicus 81 Csnk1g1 ENSRNOG00000016620 ENSRNOT00000090096 2 1 2 80 8 71663005 71670026 GAAATCAGACCACATCTTCAGAG 59 71670064 71670084 ACGTCAGGTATGAGGTATTGG 59 NA Rattus norvegicus 81 Adh6 ENSRNOG00000012436 ENSRNOT00000083682 3 1 3 80 2 243559815 243559833 AAAGCCTCTCCGTTAACCC 60 243559876 243560775 CTTTACTCTTAAACCCGCCG 59 NA Rattus norvegicus 81 RGD1310852 ENSRNOG00000006370 ENSRNOT00000090270,ENSRNOT00000008382 1 2 2 80 7 97900291 97900312 GCAACGATATTGAAGTTCTCAC 58 97899431 97900251 GCAGAGCTTTCTCGTATTCC 59 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000076519,ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000077505,ENSRNOT00000008319 1 8 9 81 4 14159677 14159697 GAGGAAGTGGCAAAGAATAGC 59 14159736 14167454 CCTTGGCTAAATAACGAACTCTG 60 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000077505 3 1 9 98 4 14071767 14071786 CATTATTGGTGCTGTCCTGG 59 14071846 14076151 TCTTCAAGGACAACTTCCCT 59 NA Rattus norvegicus 81 Stard8 ENSRNOG00000033883 ENSRNOT00000043872,ENSRNOT00000081662 2 2 2 84 X 68777364 68777382 ACCTAACGCATCAGTACCC 59 68777430 68778032 GTGCCAACGAAGTTTCCTG 60 NA Rattus norvegicus 81 Zbbx ENSRNOG00000009792 ENSRNOT00000081423 1 1 2 80 2 173463296 173463316 CAACACTGTTGATCAACAAGC 59 173455793 173463255 TCTTCTGAAGGATCTGCAGG 59 NA Rattus norvegicus 81 Tsta3 ENSRNOG00000009020 ENSRNOT00000082058 1 1 2 80 7 116960398 116961963 GATTTCTGGATCCACAACGG 59 116960337 116960356 GTTCTGCACGTCAATCATCC 60 NA Rattus norvegicus 81 Mlxipl ENSRNOG00000046171 ENSRNOT00000074230,ENSRNOT00000071067 2 2 3 81 12 24595376 24599715 AATACACGTCTCCAGGCTC 59 24595313 24595333 CAGGAAGAAGGAATTCAGAGC 59 NA Rattus norvegicus 81 Mlxipl ENSRNOG00000046171 ENSRNOT00000071067 2 1 3 80 12 24606685 24606707 GTGGAGAATCTACTACAAGAAGC 59 24605886 24606268 CAACCATATACCTGCTTGGG 58 NA Rattus norvegicus 81 Erc2 ENSRNOG00000015148 ENSRNOT00000047118 2 1 3 106 16 3674812 3674833 AGAGGGACTCGAAACTAAAGTC 60 3674898 3674921 CGTTTCTTCGACTTCACTCAC 60 NA Rattus norvegicus 81 Tmem51 ENSRNOG00000014197 ENSRNOT00000089981,ENSRNOT00000019171 3 2 2 149 5 160571604 160575267 GAAGACAGCCAGGAAGAGG 60 160571473 160571493 AGTTAGCGATTCATAGGAGGG 59 NA Rattus norvegicus 81 Fam83h ENSRNOG00000030264 ENSRNOT00000082433,ENSRNOT00000048446 2 2 2 81 7 117066628 117066646 GTCTTTCAAGGGCCATCTG 59 117066375 117066586 CCACATGAAGCTATAACTACCG 59 NA Rattus norvegicus 81 Mrpl1 ENSRNOG00000002070 ENSRNOT00000002834 3 1 2 119 14 14953688 14953706 TAAATGAGGTCTGCAGGCA 59 14951619 14951639 TTCCAGCTTCGGGTAAGAG 59 NA Rattus norvegicus 81 Csnk1a1 ENSRNOG00000017106 ENSRNOT00000044346,ENSRNOT00000066133,ENSRNOT00000078783 3 3 3 81 18 56899337 56899359 CTCGAAGACCTCTTCAATTTCTG 60 56899397 56900107 TTCTACTGATCATCTGGTCAGC 60 NA Rattus norvegicus 81 Serinc4 ENSRNOG00000015499 ENSRNOT00000021008,ENSRNOT00000089433 1 2 3 80 3 113420082 113420206 CCCAGAGACAATAATCTTTCAAGG 60 113420025 113420043 TCCGGTATTTGTGGTTCCA 59 NA Rattus norvegicus 81 Serinc4 ENSRNOG00000015499 ENSRNOT00000064982 3 1 3 88 3 113420555 113420575 AATGTTACTCAGTCTGCACCT 60 113419558 113420505 TAGGAAGCCTCGTTGTGAG 59 NA Rattus norvegicus 81 Grin1 ENSRNOG00000011726 ENSRNOT00000037725,ENSRNOT00000049297,ENSRNOT00000044246 2 3 3 80 3 2514181 2514274 GTCAAGAAGGAGATTCCCAG 58 2514120 2514138 CAGTCCTACTAGCAACCAC 57 NA Rattus norvegicus 81 Wdr83os ENSRNOG00000033611 ENSRNOT00000087627 3 1 2 82 19 26195317 26195337 GTCTACTGCTCCTTTATCAGC 58 26195379 26195471 ATTGAGAGCATGAAGCTACTC 58 NA Rattus norvegicus 81 Elk3 ENSRNOG00000004367 ENSRNOT00000005911 3 1 1 63 7 34121489 34121510 GGGCTCTGAGATACTATTACGA 59 34103037 34103055 TACACAAACTTCTGCCCGA 59 NA DesignNoJunction Rattus norvegicus 81 Col1a2 ENSRNOG00000011292 ENSRNOT00000016423 1 1 2 109 4 31534282 31537249 GCAACATGCCAATCTTTCCT 60 31539048 31539066 TCAACACCATCTCTGCCTC 59 NA Rattus norvegicus 81 Col1a2 ENSRNOG00000011292 ENSRNOT00000089292 3 1 2 93 4 31536677 31537269 TACAAATGGGATCTGTACGGA 59 31539048 31539066 TCAACACCATCTCTGCCTC 59 NA Rattus norvegicus 81 Ap1ar ENSRNOG00000024492 ENSRNOT00000055607,ENSRNOT00000082173 1 2 2 80 2 232155839 232155861 GAGGCATTATGACTCTATTGCTG 60 232154421 232155803 TTCTCCTCTTGTAAGGCTAACTC 60 NA Rattus norvegicus 81 Rabgap1l ENSRNOG00000002736 ENSRNOT00000076272 2 1 4 143 13 78431958 78443054 GAAGCAGAAGAGGAACCTG 58 78431833 78431851 CACAGTCCAGCATGTTCAG 59 NA Rattus norvegicus 81 Sh3pxd2a ENSRNOG00000020353 ENSRNOT00000082799 2 1 2 130 1 267092771 267122326 CAAGAGGAAATCAGGTGCC 59 267092659 267092679 CGATGACATCTACTACCTCCC 59 NA Rattus norvegicus 81 Tac1 ENSRNOG00000007374 ENSRNOT00000009888,ENSRNOT00000052333 3 2 3 80 4 33640509 33640527 GGATTAATGGGCAAACGGG 59 33641008 33641503 CTGACCATGCCCATAAAGAG 59 NA Rattus norvegicus 81 Klhl36 ENSRNOG00000016422 ENSRNOT00000022091,ENSRNOT00000081019 2 2 2 85 19 52533160 52533178 AATGGAGCCCTGTCTTCTG 59 52533227 52535388 CCATAGGTGAACCTTGGCA 60 NA Rattus norvegicus 81 Wbp5 ENSRNOG00000034198 ENSRNOT00000050302 3 1 1 115 X 106792006 106792024 AGAGATCGACCAGATCCGT 60 106793941 106793959 CAGGCTTTGGCTCATTCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pard6a ENSRNOG00000017746 ENSRNOT00000044971 2 1 2 108 19 37668249 37669152 TGGGAGCGATCTAGTTTGAC 60 37669223 37669241 GGGATCTGGTGTACCACAC 60 NA InUTR Rattus norvegicus 81 Rspo2 ENSRNOG00000037687 ENSRNOT00000082741 1 1 3 80 7 82058595 82058613 TATGGATTACAGCCAGTGC 57 81992028 82058551 ACATAACTAGCTTCAGGCG 57 NA Rattus norvegicus 81 Tmem184a ENSRNOG00000001275 ENSRNOT00000085936,ENSRNOT00000001718 3 2 2 80 12 16918362 16918486 AGGCAAACCTATCAGGTCC 59 16918528 16918548 AAGCGTAAGAAAGTGATGGAG 59 NA Rattus norvegicus 81 Ap3s2 ENSRNOG00000043141 ENSRNOT00000068084,ENSRNOT00000082591 3 2 2 81 1 141641730 141641751 TTGTGGAGACTCTGGATAAGTG 60 141615632 141641690 AGGATGTAGTGCACCTTATCC 59 NA Rattus norvegicus 81 Mroh1 ENSRNOG00000030355 ENSRNOT00000081632 3 1 2 80 7 117505359 117508434 CTTTGACAGTCACACCTGC 59 117508478 117508496 AGGAGCAGCTCTAAGACCT 60 NA Rattus norvegicus 81 Atf2 ENSRNOG00000001597 ENSRNOT00000002174 3 1 2 80 3 60748463 60748482 TCAACAAGCAGTACCTTCAC 58 60747733 60748420 GGTACAGGAACAATTGGCC 59 NA Rattus norvegicus 81 Ednra ENSRNOG00000012721 ENSRNOT00000058162,ENSRNOT00000080095,ENSRNOT00000078395,ENSRNOT00000080317 2 4 6 115 19 33932967 33965639 ATGTGTTTAAGCTGTTGGCG 60 33965717 33965735 ATTCAGGACAGTGATGCCC 60 NA Rattus norvegicus 81 Caskin1 ENSRNOG00000003195 ENSRNOT00000004486,ENSRNOT00000043951 2 2 2 80 10 13865061 13865080 CGGGCTACAAAGGATTACTG 59 13865120 13865298 TTCAAGTACCGTGATAATGTCC 58 NA Rattus norvegicus 81 Numa1 ENSRNOG00000000417 ENSRNOT00000000474 3 1 2 81 1 167076997 167077015 GAGAGGCAGAAACTCACTG 58 167077682 167083464 TATTCAGTTCTTCCACCTGC 58 NA Rattus norvegicus 81 Megf11 ENSRNOG00000010634 ENSRNOT00000050649,ENSRNOT00000037941,ENSRNOT00000082401 1 3 4 80 8 70175533 70175971 TGAACGTGTTAGACTCCCA 58 70176009 70176033 GTCTAAGTTCAATGTAGAAGTCCTC 59 NA Rattus norvegicus 81 Aqp4 ENSRNOG00000016043 ENSRNOT00000090320,ENSRNOT00000068150,ENSRNOT00000077606 2 3 4 81 18 6777413 6777431 CTGATGTTACTGGTTCCGT 57 6776915 6777369 GCTCCGGTATAATTGATTGC 57 NA Rattus norvegicus 81 RT1-N2 ENSRNOG00000029386 ENSRNOT00000050159,ENSRNOT00000086026,ENSRNOT00000084770 1 3 3 80 20 3149123 3149142 CTCTGCAATTGTCCTCTGTG 59 3149185 3149692 TGCCTTCCTCTTTCACCTG 60 NA Rattus norvegicus 81 Stag3 ENSRNOG00000001360 ENSRNOT00000092039,ENSRNOT00000042006 2 2 2 80 12 19630138 19630159 TACTTCATAGCCCTTCTTCTCC 59 19630197 19630431 ATCAGAAATCCTCCATGTTCAG 58 NA Rattus norvegicus 81 Stk11ip ENSRNOG00000020107 ENSRNOT00000027256 2 1 2 86 9 82724732 82724933 AGGATCTTCAGCAGACTTCAG 60 82724981 82724999 AGGTTTCAGTGGTACTCCC 59 NA Rattus norvegicus 81 Ric8b ENSRNOG00000007323 ENSRNOT00000009625,ENSRNOT00000090153 1 2 2 80 7 25972147 25980642 CTCAAAGATCAGGTGTTACCAC 59 25980682 25980701 CACCAGCTTATTTCTCACGG 59 NA Rattus norvegicus 81 Ciita ENSRNOG00000002659 ENSRNOT00000003572 2 1 3 80 10 5240095 5260251 CCATGGAGGCCATACTCTG 60 5240033 5240052 GCATCACTGTTAAGGAGCTC 59 NA Rattus norvegicus 81 Tcp11l1 ENSRNOG00000042576 ENSRNOT00000060311 3 1 2 84 3 94636353 94636377 CTTCGCTATCAGCATGTAGG 58 94636288 94636306 TGCTTCTCCAACACTTCCT 59 NA Rattus norvegicus 81 Csrp3 ENSRNOG00000014327 ENSRNOT00000019311 1 1 2 98 1 104149447 104149465 ATAAGACCTGCTTTCGCTG 58 104147494 104149385 TGGCATAGCAAACTTTGCA 59 NA Rattus norvegicus 81 Pfkfb3 ENSRNOG00000018911 ENSRNOT00000025731 2 1 4 106 17 70703392 70703410 CACAGTCCTGAAACTGACG 59 70703584 70705170 TCTTTGCATCCTCTGACCT 58 NA Rattus norvegicus 81 LOC362863 ENSRNOG00000026807 ENSRNOT00000091725 1 1 3 80 7 27248816 27248834 CAGAGACCTGGACGAACTG 60 27250457 27250483 TCCATGATCATTGGATACAGCT 60 NA Rattus norvegicus 81 LOC362863 ENSRNOG00000026807 ENSRNOT00000031946 1 1 3 80 7 27288924 27289010 CCTAGGTAATCGCCAATTATCTG 59 27289111 27289130 AGCATCTCTGTCATGGATGG 60 NA Rattus norvegicus 81 LOC100912525 ENSRNOG00000027365 ENSRNOT00000038775,ENSRNOT00000058985 2 2 2 78 4 82159735 82159755 GATGAAGAAGATCCACGTGAG 59 82159186 82159204 GGTATAGGCGGTTCGAGAG 60 NA DesignNoJunction Rattus norvegicus 81 Rassf1 ENSRNOG00000021548 ENSRNOT00000037375,ENSRNOT00000037363 2 2 2 82 8 116314190 116314212 TTCATGGTAGTAGATGATCCTCG 59 116314249 116314405 GACAGTTTCCGGAAGTATATTTGG 60 NA Rattus norvegicus 81 Hoxa6 ENSRNOG00000048917 ENSRNOT00000082933,ENSRNOT00000074452,ENSRNOT00000008542 3 3 3 71 4 82176911 82176930 GTACACAAGCCCTGTTTACC 59 82175281 82175299 CCGTGACTCCCATACACAG 60 NA DesignNoJunction Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000076583,ENSRNOT00000076950,ENSRNOT00000076633,ENSRNOT00000068276 3 4 8 87 4 8223895 8223914 GCAACATATTGACTGCATGG 58 8217602 8223845 TTTATCCAAACTCCTGGGC 57 NA Rattus norvegicus 81 Kcnma1 ENSRNOG00000005985 ENSRNOT00000091318 3 1 4 80 15 1006250 1011434 ATAACGGAGTTGGTGAACGA 60 1011476 1011495 GAGGTACAGCTCTGTGTCAG 60 NA Rattus norvegicus 81 Zfp498 ENSRNOG00000042213 ENSRNOT00000076827,ENSRNOT00000039687 1 2 2 138 12 11779885 11779903 GCCAGTAGAAGTCAAGCCT 59 11779047 11779783 AAGAATGGGCAATGCTTGC 60 NA InUTR Rattus norvegicus 81 Bmp4 ENSRNOG00000009694 ENSRNOT00000012957,ENSRNOT00000083268 2 2 2 92 15 20777230 20778252 CATCACGAAGAACATCTGGA 58 20777157 20777175 CTCATTCTCTGGGATGCTG 58 NA Rattus norvegicus 81 Pds5b ENSRNOG00000001098 ENSRNOT00000064951 2 1 4 81 12 786067 786746 GCATTGTATCAATCTGAGTTGG 58 786784 786806 CCATACCTAATTTCTCTTCTGGG 59 NA Rattus norvegicus 81 Mgrn1 ENSRNOG00000003234 ENSRNOT00000004416 1 1 2 80 10 10841873 10844847 CCACGATGAACACTCTAATTCTG 60 10841815 10841833 CGTAGTCCATTGAGTGCCT 60 NA Rattus norvegicus 81 Akr1c2 ENSRNOG00000029844 ENSRNOT00000051342 3 1 2 82 17 69391736 69395070 AAAGAGAACATGAAGCTGAGTC 59 69391675 69391694 ATTCCACCAGCTATGTACCG 60 NA Rattus norvegicus 81 Rnaset2 ENSRNOG00000013190 ENSRNOT00000084628 2 1 2 80 1 53186152 53186170 ATGCCCTCAATTCCGAGAG 60 53186213 53186398 CTTGGGTAAAGCTGTTGAGG 59 NA Rattus norvegicus 81 Shprh ENSRNOG00000014450 ENSRNOT00000019893 2 1 2 82 1 5248348 5250567 TCCTGCTGATAACTCCCTG 59 5250609 5250631 CTGTGTACGGATTATAGTAGAGG 58 NA Rattus norvegicus 81 Dctn4 ENSRNOG00000019298 ENSRNOT00000026394 1 1 2 80 18 55810078 55810096 GATCGCAAGAAACTGGCAC 60 55811281 55811801 GTACTTGTCCACTACATGAATAGTG 59 NA Rattus norvegicus 81 Snai1 ENSRNOG00000009594 ENSRNOT00000012939,ENSRNOT00000077581 2 2 2 120 3 164275572 164275590 TCTGAAGATGCACATCCGA 59 164275674 164278304 GAAAGGCTTCTCACCAGTG 59 NA Rattus norvegicus 81 Ercc5 ENSRNOG00000022812 ENSRNOT00000076248,ENSRNOT00000059349 2 2 3 80 9 50929803 50930817 AAACAGACCTTGGCAAAGAG 59 50930859 50930878 TTTCAGAAGCTTCTCTGTGG 58 NA Rattus norvegicus 81 Kdm3a ENSRNOG00000007814 ENSRNOT00000045279,ENSRNOT00000077447 3 2 2 80 4 99528185 99528203 CCAAGACAGCAGAACACTC 59 99526341 99528142 CTGCTTGTGACATCCTTGAG 59 NA Rattus norvegicus 81 Fam53b ENSRNOG00000061348 ENSRNOT00000086830,ENSRNOT00000077956 3 2 2 93 1 204761788 204761806 AGAAGATCGGTGTGAAACG 58 204718390 204761731 AAGGTCTGACAGTTCTGTG 57 NA Rattus norvegicus 81 Mdc1 ENSRNOG00000032813 ENSRNOT00000081676,ENSRNOT00000046798 2 2 5 80 20 3415244 3415890 GTTCCAGAAAGTGATGAAGAGG 59 3415185 3415204 GTCACTTCCCAAACCAAAGG 59 NA Rattus norvegicus 81 Ncf1 ENSRNOG00000001480 ENSRNOT00000002028,ENSRNOT00000076916 2 2 2 80 12 25500930 25500948 CTGCATCCTATTTGGAGCC 58 25500992 25502890 TTACATACGGTTCACCTGC 58 NA Rattus norvegicus 81 Dcdc5 ENSRNOG00000022178 ENSRNOT00000089524 3 1 2 92 3 97389367 97390785 CAAAGAAACACAGCCATTTCTC 59 97390833 97390856 CGAGACTAATGATTTGACCATCTC 60 NA Rattus norvegicus 81 Wdr44 ENSRNOG00000029068 ENSRNOT00000088661,ENSRNOT00000040742 3 2 3 83 X 120959395 120960415 AGCAAGTTTCAGCCATGAC 59 120960460 120960480 AGGTCATGGTAAGTACTCCAG 59 NA Rattus norvegicus 81 Mrpl44 ENSRNOG00000015231 ENSRNOT00000020420 1 1 1 78 9 85542900 85542918 CTTCCAGAAGGAGCTGGAG 60 85544451 85544469 CCAGTTTGGCTTCTCTGAG 58 NA DesignNoJunction Rattus norvegicus 81 Micu1 ENSRNOG00000043436 ENSRNOT00000082734 3 1 2 80 20 29322182 29322202 ATAACACCCAATGAGAAGCAG 58 29330323 29336581 CCAGAATTCCTTTCCATCGA 58 NA Rattus norvegicus 81 Ugp2 ENSRNOG00000008079 ENSRNOT00000081245 3 1 2 80 14 106233393 106234245 GAGAGTAGTTCAGGATCTTAGCA 59 106233335 106233357 TCTAGTTCTTGGAGAATGACCTC 59 NA Rattus norvegicus 81 Sptlc2 ENSRNOG00000012210 ENSRNOT00000016324,ENSRNOT00000085458 3 2 2 80 6 111381614 111381632 CATCTGTAGTGTGCCTGGA 59 111379848 111381572 CCTGTGTACTTGAATGACCAG 59 NA Rattus norvegicus 81 Tln2 ENSRNOG00000018373 ENSRNOT00000024885,ENSRNOT00000081450,ENSRNOT00000064613 1 3 5 80 8 73189664 73189683 AAGACAGGACGTTGTTACGA 59 73185869 73189623 GCCAATTTAGGTCATCATCCG 60 NA Rattus norvegicus 81 Mcemp1 ENSRNOG00000028259 ENSRNOT00000084431 2 1 2 108 12 2213722 2213740 CAACCCAGAAGAATGCAGG 59 2213899 2214012 GATTGTGAGCACCTCTGGA 59 NA Rattus norvegicus 81 Smdt1 ENSRNOG00000008461 ENSRNOT00000011316 3 1 1 110 7 123579013 123579031 AGGTCAGTCATCGTCACTC 59 123580742 123580761 TGTCCCAACATAGAGAAAGG 57 NA DesignNoJunction Rattus norvegicus 81 Il17rd ENSRNOG00000021966 ENSRNOT00000077117 2 1 2 93 16 2724789 2725895 GCAACAAGATGAAGAAAGCC 58 2725950 2725969 ATAGCAGAGGAAGACCTTGG 59 NA Rattus norvegicus 81 Gtf2b ENSRNOG00000011135 ENSRNOT00000089648 3 1 2 81 2 248722155 248723258 GGTAATAGGTGTGGTAACTGTG 59 248723298 248723318 TGCTGAAAGTTCTCCATTCAG 59 NA Rattus norvegicus 81 Letmd1 ENSRNOG00000029855 ENSRNOT00000042786,ENSRNOT00000088681 1 2 2 80 7 142109764 142109784 AAGTGTCTCTTCATAGGCCTC 59 142109823 142111978 CCTAGGAAACAGGTACATTAGC 58 NA Rattus norvegicus 81 Tm6sf1 ENSRNOG00000019662 ENSRNOT00000063873 3 1 2 87 1 143661626 143679881 ACCGATCAAATTCCTGGAC 58 143679932 143679950 TTTCTTCTGACAAGGACCC 57 NA Rattus norvegicus 81 Golph3l ENSRNOG00000047620 ENSRNOT00000083069,ENSRNOT00000070919 3 2 2 80 2 197740083 197740102 ACGCTCAAACACATTAAAGC 58 197740145 197747749 GTTCCATGTCTCACCAGTG 58 NA Rattus norvegicus 81 Ptprj ENSRNOG00000034025 ENSRNOT00000077943,ENSRNOT00000049832 1 2 2 97 3 79258840 79258967 AATCCAAGTTAATCCGAGTGG 58 79257515 79258785 CTTCAGATCCTCATATTCCTCTG 58 NA Rattus norvegicus 81 LOC100359912 ENSRNOG00000021584 ENSRNOT00000031851 3 1 1 64 17 66240105 66240126 GAAAGTGAAATCACTGATGAGG 58 66240323 66240341 TCTGCAGTCTTCTTTGCAC 58 NA DesignNoJunction Rattus norvegicus 81 Igf2bp3 ENSRNOG00000009052 ENSRNOT00000084543 2 1 2 80 4 78768906 78768927 CTCATTGGTAAAGAAGGAAGGA 58 78767091 78768866 TTCCTGCAATGGAGATATCG 58 NA Rattus norvegicus 81 Rnase4 ENSRNOG00000025625 ENSRNOT00000090272 3 1 2 81 15 28023026 28023044 CTAGACTGGTCCCAGTCAG 59 28034122 28034141 ATTGGGTCCTCTGTATGTCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Prrc2b ENSRNOG00000010217 ENSRNOT00000013546 1 1 3 80 3 11234894 11234912 GAAGTCCTGACCAAGAAGC 58 11234956 11235409 TTTGACAGGTACCTGAGCA 59 NA Rattus norvegicus 81 Apcdd1l ENSRNOG00000028440 ENSRNOT00000036546,ENSRNOT00000091966 1 2 2 177 3 171885206 171890355 AAAGTGTTGTGCACCACAC 60 171885047 171885065 CTGAAATGCCGAGTGAGGA 60 NA Rattus norvegicus 81 Tox4 ENSRNOG00000012844 ENSRNOT00000081830,ENSRNOT00000017476 1 2 2 80 15 28708272 28708292 CCTGTTATCAGTAAGGACTGG 58 28708334 28708885 GGCCAAGAATACATCCCTG 58 NA Rattus norvegicus 81 Arhgef10l ENSRNOG00000050636 ENSRNOT00000075382 1 1 3 138 5 159072076 159074518 CATCAACTTCAAGGGCCAG 59 159071956 159071974 ATTGTCCTTGTCGTAGGCA 59 NA Rattus norvegicus 81 Tcte3 ENSRNOG00000015293 ENSRNOT00000078312,ENSRNOT00000047157 3 2 2 88 1 56982501 56982519 CACCCAAACGCATCAATCC 60 56976085 56982455 CTCTTAAGATCTGTGCATATGACTC 59 NA Rattus norvegicus 81 Syne4 ENSRNOG00000020830 ENSRNOT00000090545,ENSRNOT00000051422 3 2 2 113 1 90952694 90953342 AGCCTCAGGACAAGAAGAG 59 90952507 90952525 GGAGAAGGAGGAAGGTCAG 59 NA Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000035838,ENSRNOT00000089869,ENSRNOT00000078658,ENSRNOT00000087568,ENSRNOT00000078538 1 5 6 80 20 3305442 3306023 CGATGATGGAAGACAAATCTGAC 60 3306059 3306081 CACAATGGTCTTCATATCGACAG 60 NA Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000089869,ENSRNOT00000087568 2 2 6 119 20 3300785 3301071 AACAGTTAAGGACCACCCAG 60 3305191 3305209 TGGTGGAATCATTGGTCCC 60 NA InUTR Rattus norvegicus 81 Mtus2 ENSRNOG00000032410 ENSRNOT00000085869,ENSRNOT00000064721 1 2 2 80 12 8116099 8116118 AAAGATCCAGGTACTCCAGC 59 8114418 8116058 GACAGTTGTCTGGTAACAACC 59 NA Rattus norvegicus 81 Mtus2 ENSRNOG00000032410 ENSRNOT00000085869 2 1 2 85 12 8197820 8197838 AGAAGCTAAGAAGCCTGCC 60 8190004 8197771 TCTGCTTTGGGTAACCTGG 60 NA Rattus norvegicus 81 Ovol1 ENSRNOG00000020669 ENSRNOT00000028081 3 1 2 124 1 220931603 220938418 AGATCTACGTGCCAGTCAG 59 220931497 220931515 ATAGCTGGAGTCTCGAAGG 58 NA Rattus norvegicus 81 Hiat1 ENSRNOG00000050407 ENSRNOT00000075340,ENSRNOT00000088123 2 2 2 80 1 69817726 69817746 TGTCTAGCATCACCTTTCCAG 60 69817788 69818577 TTCCCTGAACAACACCCTG 60 NA Rattus norvegicus 81 Med12l ENSRNOG00000010680 ENSRNOT00000014470 1 1 4 115 2 149313114 149314182 AATGAAGATGGAGGAGCAC 57 149314259 149314279 GAAACTCAGAACCAAAGTCAC 58 NA Rattus norvegicus 81 LOC100360274 ENSRNOG00000047581 ENSRNOT00000061476,ENSRNOT00000079703 1 2 3 146 9 12477292 12587077 ACAGTTCCTACCGCATCAG 60 12587187 12587205 AGAACCTCTTTGCCTCCAC 60 NA Rattus norvegicus 81 LOC100360274 ENSRNOG00000047581 ENSRNOT00000050485,ENSRNOT00000061476,ENSRNOT00000079703 2 3 3 86 9 12476113 12476132 AAGTGTCAATTCGAGAGGGA 59 12476181 12586287 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 LOC100360274 ENSRNOG00000047581 ENSRNOT00000050485,ENSRNOT00000061476,ENSRNOT00000079703 3 3 3 87 9 12476112 12476131 GAAGTGTCAATTCGAGAGGG 58 12476181 12586287 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 Reps1 ENSRNOG00000059224 ENSRNOT00000089607 2 1 2 80 1 13212492 13262078 TGGTTCTCCAGATCATGGAG 59 13262118 13262139 GCTTCAAAGCAATGTAGAACTG 59 NA Rattus norvegicus 81 Acss3 ENSRNOG00000004448 ENSRNOT00000082141 1 1 2 80 7 49063874 49074132 GGAAATATCGTGGTAAAGTTGC 58 49063815 49063834 TAAATGCTTGAACGCTTCCT 58 NA Rattus norvegicus 81 Gfpt1 ENSRNOG00000018507 ENSRNOT00000025070 2 1 2 106 4 118871038 118874567 CTGTACAGAACAGGCAAAGAC 59 118874633 118874653 GCAAAGTAATATTCAACCGCC 58 NA Rattus norvegicus 81 Pacsin2 ENSRNOG00000009756 ENSRNOT00000013428,ENSRNOT00000088125,ENSRNOT00000013398 3 3 4 82 7 124230076 124233814 AGTTTGAGGAGTGGTCTGC 60 124230012 124230031 TGTTAGGGTGACACCATCAG 60 NA Rattus norvegicus 81 Spg21 ENSRNOG00000015019 ENSRNOT00000077163 1 1 2 80 8 71019322 71019340 TCACCTTAAGACAGGAGGC 59 71019383 71021697 TGCAGCAAATGTATCTGCAC 60 NA Rattus norvegicus 81 Naif1 ENSRNOG00000050204 ENSRNOT00000072241 1 1 1 96 3 11477621 11477639 TACCACAGAGATCCATCCC 58 11479523 11479541 GTGGTAGGTGGTCTCAGTG 59 NA DesignNoJunction Rattus norvegicus 81 Mprip ENSRNOG00000003226 ENSRNOT00000080666 2 1 3 108 10 46118789 46118807 CAAATGGGTGTCATGCGAG 60 46118879 46121875 CACATGTAGCCTTGAGGCT 60 NA Rattus norvegicus 81 Mprip ENSRNOG00000003226 ENSRNOT00000040865,ENSRNOT00000004357 1 2 3 80 10 46085366 46085384 CCTCTGCATCCTAACACCT 59 46085428 46089139 AGCATCTCTAACCACCCAC 59 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000085979,ENSRNOT00000059739 1 2 8 80 6 64838566 64838586 TCTATGCACAAACATCAGTGG 59 64838627 64839960 GAAGAATACCAGCTTCGTCC 59 NA Rattus norvegicus 81 Mcc ENSRNOG00000011271 ENSRNOT00000085714,ENSRNOT00000079667 1 2 2 95 18 35781590 35781608 TATGAGGAGCGCATCACAG 60 35762729 35781532 CTCATCTTCCTCCCTGATGG 59 NA Rattus norvegicus 81 Rufy3 ENSRNOG00000003428 ENSRNOT00000092172,ENSRNOT00000020608 1 2 3 83 14 21127747 21127765 TGGATGGAGAATGGCTCTG 59 21114321 21127700 CCCAAGAGTCTTCATGGGT 59 NA Rattus norvegicus 81 Rrad ENSRNOG00000011901 ENSRNOT00000016259,ENSRNOT00000081547 1 2 2 84 19 563182 563300 ATTTGGGAACAGGATGGAG 57 563345 563366 CCGTTATTGAGTACACAATGAC 58 NA Rattus norvegicus 81 Fam149b1 ENSRNOG00000006554 ENSRNOT00000065858 3 1 2 155 15 4392275 4395189 GGAACTTGACCAGAATGCC 59 4390232 4392157 CTACCCAGAATCCTGAGGTG 59 NA Rattus norvegicus 81 Fam149b1 ENSRNOG00000006554 ENSRNOT00000079812 3 1 2 83 15 4392282 4395195 GGATATGGTGAACTTGACCA 57 4392218 4392237 CTTCTGTTCATACAGGAGCT 57 NA Rattus norvegicus 81 Kalrn ENSRNOG00000001706 ENSRNOT00000016340 3 1 2 106 11 69837668 69837686 GGGTAGAGGATGGTGACAG 59 69837756 69856144 GTTGCCATCCTTGTCACTC 59 NA Rattus norvegicus 81 Map3k5 ENSRNOG00000031700 ENSRNOT00000067070 2 1 2 86 1 15475039 15488396 TTCAGTCCCTGAAGGTGTG 59 15488446 15488464 TGCTGTCACAGCAGTAGAC 60 NA Rattus norvegicus 81 Cyp2d3 ENSRNOG00000029179 ENSRNOT00000092017,ENSRNOT00000044470 3 2 4 123 7 123637579 123637598 GATCAATGGACTGAAGGCAG 59 123637215 123637493 AAGCACCACACCTTTAGCT 60 NA Rattus norvegicus 81 Slc28a1 ENSRNOG00000018940 ENSRNOT00000025621,ENSRNOT00000077441 2 2 2 80 1 142963145 142965386 CAGATCCAGGTCTTCCTGAG 59 142965429 142965447 GGCAAAGACATCCTTCACC 59 NA Rattus norvegicus 81 Cd5 ENSRNOG00000020872 ENSRNOT00000086669,ENSRNOT00000065376 1 2 4 107 1 226783399 226791730 GAACACTGGCTGCTTTCTG 60 226779540 226779558 AGCCACTTAGCATCACCTG 60 NA Rattus norvegicus 81 Agfg2 ENSRNOG00000001404 ENSRNOT00000077711 2 1 2 80 12 22102815 22102834 CTATTCGGACACTTCTGGGA 59 22102877 22103550 GAGACTGGCTGACAGACTG 60 NA Rattus norvegicus 81 Wdr62 ENSRNOG00000049708 ENSRNOT00000081282 2 1 2 83 1 91029646 91030652 CTAAGTGAGTCAGGGAGCC 59 91030699 91030717 TCTTGTCTCAGTGCCTTCC 59 NA Rattus norvegicus 81 Igf1 ENSRNOG00000004517 ENSRNOT00000081822,ENSRNOT00000005995,ENSRNOT00000085680 3 3 4 83 7 28468859 28468877 TGACATGCCCAAGACTCAG 60 28470323 28485474 AGTGTACTTCCTTTCCTTCTCC 60 NA Rattus norvegicus 81 Vps29 ENSRNOG00000001274 ENSRNOT00000001717,ENSRNOT00000088905,ENSRNOT00000078683 3 3 3 82 12 39693750 39693772 GAGCTATGACTATCTCAAGACTC 58 39691563 39693711 GTTCTGGGTAATTCAGACTCTC 58 NA Rattus norvegicus 81 Mroh5 ENSRNOG00000032827 ENSRNOT00000071818 1 1 2 80 7 115036738 115037052 CTTTCCCTGAAGGTCTGCT 59 115036676 115036695 AATTCTGCCATTTGCCAGAC 60 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000057062,ENSRNOT00000066004 2 2 7 80 2 186117956 186122500 CCGTTATCATGAACACGGC 59 186117894 186117912 TGGATGATTTGCTGCTGTC 59 NA Rattus norvegicus 81 Pip5k1c ENSRNOG00000020577 ENSRNOT00000061159,ENSRNOT00000088364 3 2 2 81 7 11279523 11280525 TCCGGACGATTACTTGTACTC 59 11279462 11279480 GTAGAAGACGGAGCCACTG 60 NA Rattus norvegicus 81 Oas1e ENSRNOG00000031726 ENSRNOT00000057266 1 1 2 80 12 41282914 41282932 AGGTGGAGTTTGATGTGCA 60 41284774 41284857 CATAGATTTCCGTGTTTGGGT 59 NA Rattus norvegicus 81 Numbl ENSRNOG00000020867 ENSRNOT00000057213,ENSRNOT00000090478 3 2 2 88 1 84076217 84078101 TGACAAGACCAAGGACCTG 59 84078153 84078171 AGGAGAATGCCTTGTCCAG 59 NA Rattus norvegicus 81 Mrps18b ENSRNOG00000000804 ENSRNOT00000091461 1 1 3 90 20 3346604 3346625 CAAGTTGCATGTTGACTTTAGG 59 3349786 3350387 ACGTAGTAACATACTCCCTGG 59 NA Rattus norvegicus 81 Scn8a ENSRNOG00000005309 ENSRNOT00000008160 1 1 2 82 7 142645202 142650185 CAAACACGCTAGTGCAGAG 59 142650230 142650249 AGATGAGGAAAGTGTTGGCA 60 NA Rattus norvegicus 81 Scn8a ENSRNOG00000005309 ENSRNOT00000080923 3 1 2 80 7 142645203 142650186 AAACACGCTAGTGAAGAGC 58 142650230 142650248 GATGAGGAAAGTGTTGGCA 58 NA Rattus norvegicus 81 Fam120b ENSRNOG00000058790 ENSRNOT00000082790 2 1 2 82 1 57370768 57370787 CAAGAGAAGAGCTGCAATCC 59 57370830 57382149 GTAATCCAGCTGGACAAACAG 59 NA Rattus norvegicus 81 Prtfdc1 ENSRNOG00000024874 ENSRNOT00000034907,ENSRNOT00000080193 2 2 2 83 17 87933920 87950482 CTGGCTGGAAAGAATGTTCTC 59 87932530 87932548 TTTCTCAATGCTGCTGAGC 59 NA Rattus norvegicus 81 Gabrg2 ENSRNOG00000003241 ENSRNOT00000082445,ENSRNOT00000004619 2 2 2 80 10 27142651 27145087 TCTCCAGTTATGGTTATCCTCG 59 27142592 27142610 ATGACCTTGTGTCTCCCAC 59 NA Rattus norvegicus 81 Aldh3a2 ENSRNOG00000002342 ENSRNOT00000066109 2 1 2 82 10 47529372 47529390 GTTCAACAAAGGAAGGCTG 57 47526897 47529326 ATCACAGCTGATCCTTGAC 57 NA Rattus norvegicus 81 Ralgapb ENSRNOG00000014836 ENSRNOT00000079515 1 1 3 80 3 154935133 154935151 AAGTGGAGGAAGCACAGAG 59 154935193 154936960 TCTGTAGAGCCATAATCCCTC 59 NA Rattus norvegicus 81 Ralgapb ENSRNOG00000014836 ENSRNOT00000020556 1 1 3 80 3 154905298 154905319 TTCAGTGGCTGTAAGTGAGAG 60 154910628 154910651 GTCAGTCCATAGCAAATTACTTCC 60 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000083657,ENSRNOT00000001098,ENSRNOT00000090039 3 3 6 98 20 3430210 3430228 GAGCAAATGGCCAAGAAGG 60 3429982 3430148 GATCTCTTCTGCCACCTGG 60 NA Rattus norvegicus 81 Tcf4 ENSRNOG00000012405 ENSRNOT00000080844 2 1 3 148 18 65388686 65388762 ATCAGAGTCTCCTCGGAGG 60 65388873 65389351 TTTCTTTGTCTGCACCTCCA 60 NA Rattus norvegicus 81 Mat2a ENSRNOG00000013520 ENSRNOT00000084782,ENSRNOT00000018170 3 2 2 80 4 100299540 100299559 CAACAGTCACCAGATATCGC 59 100299404 100299498 CATCAAACCCTGATCTCCTG 58 NA Rattus norvegicus 81 Tfdp2 ENSRNOG00000011241 ENSRNOT00000081204,ENSRNOT00000015015 3 2 2 80 8 104152437 104152457 GAAGTAGCTGATGAACTGGTG 59 104152496 104154706 GTTCTTCTGATCATAAGCCGAG 59 NA Rattus norvegicus 81 Strn4 ENSRNOG00000016145 ENSRNOT00000021976 2 1 2 99 1 78755918 78755936 GAATTCTTGCTGACCTCCG 59 78755998 78756343 CCAAAGGAACCTTCATGAGG 59 NA Rattus norvegicus 81 Phykpl ENSRNOG00000048357 ENSRNOT00000086443,ENSRNOT00000059104 1 2 2 146 10 34945761 34945871 AATCTGGATGGCCAGAAGG 60 34945981 34947859 GAAGGCTGCAATCTTCCTG 59 NA Rattus norvegicus 81 Ppil6 ENSRNOG00000043186 ENSRNOT00000068693 3 1 2 92 20 46236767 46236786 CATCATACCAATGGTTCGCA 59 46236841 46243611 TCCTTCAATGAGTTGCCCA 59 NA Rattus norvegicus 81 Atp7a ENSRNOG00000061367 ENSRNOT00000080141,ENSRNOT00000091527 1 2 3 80 X 77154658 77157302 GATGGCTCATAAGGTAAAGGT 58 77157342 77157362 TTTACTTGGTTCACTACTGGG 58 NA Rattus norvegicus 81 Ppfibp2 ENSRNOG00000019667 ENSRNOT00000088110 1 1 2 80 1 171921021 171921039 TCAAGCTGGTTGGTATGGA 59 171921080 171929060 TGATCACATTCAGAACTGACTC 58 NA Rattus norvegicus 81 Noa1 ENSRNOG00000002055 ENSRNOT00000067650 2 1 3 86 14 33117630 33117652 CCGTTCATATTTCTTCCTTGGAC 60 33117698 33123803 GTTACTGCAACCCAACCAG 59 NA Rattus norvegicus 81 Eif4e ENSRNOG00000052343 ENSRNOT00000090526,ENSRNOT00000089744 1 2 2 80 2 243841237 243842501 CCCTCTACAGAACAGGTGG 59 243842544 243842563 GAGATCAACCGAAGGTTTGC 60 NA Rattus norvegicus 81 Ipo5 ENSRNOG00000010989 ENSRNOT00000014859 3 1 2 81 15 106272827 106274616 TATCGCACAGACCATTCCT 59 106274661 106274679 TAGCTCATCAGCATTTGCC 58 NA Rattus norvegicus 81 Cep290 ENSRNOG00000056458 ENSRNOT00000082090 3 1 2 164 7 40223520 40223703 AAGAATGAACAGCTTCGTCAG 59 40223826 40224583 TGTTAAGGTCTGTATTTCGTCC 58 NA Rattus norvegicus 81 Slc41a3 ENSRNOG00000045821 ENSRNOT00000073268 1 1 2 81 4 123489644 123494342 GAACACTGTCCAACACTGG 59 123489581 123489599 TCCCTTCAGACCAACAAGG 59 NA Rattus norvegicus 81 Acox1 ENSRNOG00000008755 ENSRNOT00000046754 3 1 2 81 10 104732211 104732992 GAGATGGGTCATGGAACTC 57 104732148 104732168 TGTTGAGAATGAACTCTTGGG 58 NA Rattus norvegicus 81 Cacnb1 ENSRNOG00000004518 ENSRNOT00000006098 3 1 2 83 10 85964774 85964793 TGACAACTCCAGTTCCAGTC 60 85963475 85964728 TTCTGCTTCTGTTTGGCAC 59 NA Rattus norvegicus 81 Epha5 ENSRNOG00000002024 ENSRNOT00000002793 2 1 3 81 14 25796228 25796247 GAGTTTCCGACTTGAGTCCA 60 25796291 25859223 GTGACTGGAGAAGGAGCTG 60 NA Rattus norvegicus 81 St6gal1 ENSRNOG00000001823 ENSRNOT00000044591 3 1 3 82 11 80933952 80934583 CTGGGCAAGTTAGTCACCA 60 80933888 80933909 GATGGGTCCCATACAATTAGGA 60 NA Rattus norvegicus 81 Smoc2 ENSRNOG00000014166 ENSRNOT00000019317,ENSRNOT00000079718 3 2 2 80 1 56289285 56299799 GAACTGCAAAGATGTGTCCAG 60 56299841 56299859 AACACTTGCTGGAACTCCT 59 NA Rattus norvegicus 81 Pparg ENSRNOG00000008839 ENSRNOT00000082969,ENSRNOT00000051858,ENSRNOT00000012137 2 3 3 80 4 147361934 147372231 GTCTCACAATGCCATCAGG 59 147372273 147372293 TCGATATCACTGGAGATCTCC 58 NA Rattus norvegicus 81 LOC103689943 ENSRNOG00000002314 ENSRNOT00000077828 1 1 3 80 10 32902 32922 CTTTGGAAATTCTCTGGTTGC 58 32962 34050 GTTCTCCATGTACTCTTTCGT 58 NA Rattus norvegicus 81 Phka1 ENSRNOG00000003063 ENSRNOT00000076850,ENSRNOT00000075929 1 2 3 80 X 72513543 72514993 TCCTGTGCCATCAGAATCC 60 72513481 72513500 ACACATTATCTCGGACCCAG 59 NA Rattus norvegicus 81 Slc35c1 ENSRNOG00000007732 ENSRNOT00000087884,ENSRNOT00000067509 3 2 2 108 3 81363079 81366607 CATCATTGGTGGTTTCTGGC 60 81362990 81363009 ATTGAGTGAGACACAGAGGC 60 NA Rattus norvegicus 81 Erbb2 ENSRNOG00000006450 ENSRNOT00000009114 1 1 3 85 10 86383080 86383098 CACTGTACCTTGGGACCAG 60 86383146 86383642 AGACCTGCAAATCCTCTTCC 60 NA Rattus norvegicus 81 Wdr77 ENSRNOG00000016394 ENSRNOT00000076654,ENSRNOT00000086279,ENSRNOT00000022571 2 3 3 80 2 208420948 208423573 GCTTCTGATTCAGGTGCTG 59 208423615 208423635 CTCATACTTGCAGAACTTGCT 59 NA Rattus norvegicus 81 Kctd15 ENSRNOG00000021137 ENSRNOT00000028698,ENSRNOT00000078598 1 2 2 80 1 90512427 90517106 TGACTCCAGAATAAGCCGT 58 90512365 90512385 CGGTCGATGAAATAATGTTGC 58 NA Rattus norvegicus 81 Ldhd ENSRNOG00000019036 ENSRNOT00000044844 1 1 2 80 19 43839402 43839420 AAAGCGCAATGAACTTTGG 58 43838632 43839359 CCAACAATGACTCTTCCTGG 59 NA Rattus norvegicus 81 Slc8a2 ENSRNOG00000001492 ENSRNOT00000086396,ENSRNOT00000047289 2 2 2 80 1 78040219 78044907 GATGACGAGACCATGAAGAC 58 78044949 78044968 CTCGATGAAGAAGTTGTCCT 57 NA Rattus norvegicus 81 Ranbp2 ENSRNOG00000000796 ENSRNOT00000001044 2 1 2 81 20 28057757 28057777 CTAGTCCGAAATGAAGCAAGC 60 28057820 28057925 AATCCCACTGTCCTTCAGG 59 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000077517 3 1 8 88 6 128050254 128050272 CCTTCATTGCAGCTTTGGG 60 128050322 128075369 ATGGAATAGAGTGTCCCTTCC 59 NA Rattus norvegicus 81 Usp31 ENSRNOG00000025793 ENSRNOT00000055048,ENSRNOT00000082927 3 2 2 80 1 191627933 191627956 GACTACATCTATGACCTGTATGCT 60 191622355 191627899 GTTCTTACAGTATGCTGTGTAGTG 60 NA Rattus norvegicus 81 Cmpk1 ENSRNOG00000007775 ENSRNOT00000010318,ENSRNOT00000081051 1 2 2 81 5 133763559 133763577 AACAAGACCATGGATGGGA 59 133762288 133763517 GACATCGGTCAATACAGATCTC 59 NA Rattus norvegicus 81 Ccpg1 ENSRNOG00000053428 ENSRNOT00000085403 1 1 2 83 8 79685398 79685418 GAAGATGAGCTGAACAGTGTG 59 79685459 79687520 TGACTGGGTCTTGAAATCTAGAG 60 NA Rattus norvegicus 81 LOC361646 ENSRNOG00000016635 ENSRNOT00000022365,ENSRNOT00000083248 1 2 2 80 1 197259444 197259462 CTACTACATTGGCCTCACG 58 197259506 197261529 GCAGCAATATTGTTCTGGG 57 NA Rattus norvegicus 81 Prodh ENSRNOG00000000281 ENSRNOT00000002576 1 1 2 80 11 87058898 87063141 CACCATGAGCAGTTGTTCC 59 87063181 87063203 GTAGAAGGTCATCTTCATCAGTC 59 NA Rattus norvegicus 81 Erc1 ENSRNOG00000009264 ENSRNOT00000091473 3 1 2 80 4 152302703 152302723 AGCTAAGTTCCAAAGATGCTC 58 152298101 152302661 GTTTCACCTGGCCAATCTC 59 NA Rattus norvegicus 81 RGD1564074 ENSRNOG00000030938 ENSRNOT00000041922 3 1 2 82 5 124442465 124475898 CCACAATGGAAGAGGAAGG 58 124475944 124475962 TCCTGAAAGAGGTACAGCA 58 NA Rattus norvegicus 81 Ppp1r15a ENSRNOG00000020938 ENSRNOT00000079633 2 1 2 80 1 101512950 101512969 AGTACCCAGCATTGTCTACC 59 101512888 101512908 AATAGAAGGCCACTGGAAGG 60 NA Rattus norvegicus 81 Ppm1h ENSRNOG00000004314 ENSRNOT00000005798,ENSRNOT00000066381 3 2 2 81 7 66863070 66881567 CTTCAGCTCCAGAGGTCAG 60 66863007 66863026 CCATCAGTAGCCAGGATCAG 60 NA Rattus norvegicus 81 Pik3c2b ENSRNOG00000029938 ENSRNOT00000042125 2 1 2 83 13 49880250 49880268 ACTCCTGAGATCACGAGTG 59 49880314 49882762 TTCTACCACCTTCTTCTGGA 58 NA Rattus norvegicus 81 Clcnkb ENSRNOG00000009897 ENSRNOT00000013550,ENSRNOT00000050729 2 2 3 80 5 159956691 159957083 CTTCAACAGTGAACAGGAGAC 59 159956631 159956651 ATCTCTGGTAAGTCAAAGGGT 59 NA Rattus norvegicus 81 Clcnkb ENSRNOG00000009897 ENSRNOT00000013550 3 1 3 91 5 159960634 159960652 GTACTTCCTGGTGGCTCTC 60 159960132 159960579 GCCACTTATGTGCTCTGAC 59 NA Rattus norvegicus 81 Cd22 ENSRNOG00000024000 ENSRNOT00000033155,ENSRNOT00000078284 2 2 2 80 1 89315333 89316139 CAGAAGCGGAATATGGGTG 58 89315271 89315290 AACCAGCTCTGAGTAATGGA 59 NA Rattus norvegicus 81 Ubac2 ENSRNOG00000012710 ENSRNOT00000016986 3 1 2 80 15 108316051 108317748 AAGAACGACTTCCAGATTTGG 59 108317789 108317808 AAGACCACTACAGAAAGCGT 59 NA Rattus norvegicus 81 Lsg1 ENSRNOG00000001727 ENSRNOT00000081081,ENSRNOT00000002354,ENSRNOT00000090940 1 3 3 80 11 73699419 73699439 ATATTGACTCCCTTTGAACGG 58 73699478 73711557 CTGGACCACAATATCACTTCTC 59 NA Rattus norvegicus 81 Rbm28 ENSRNOG00000005468 ENSRNOT00000077079,ENSRNOT00000064007 1 2 2 162 4 56406869 56411704 GTGTAGAGTGATGCGAGAC 58 56406436 56406744 CACTATTGGTCTCTTCTGGG 57 NA Rattus norvegicus 81 Lilrb3l ENSRNOG00000053260 ENSRNOT00000080799,ENSRNOT00000080820 3 2 4 81 1 63846178 63846196 GCTATGGTTCTCCCGACTC 60 63846237 63846488 TCGATGGATTCTGAGACTATGAG 59 NA Rattus norvegicus 81 Dab1 ENSRNOG00000007410 ENSRNOT00000082021,ENSRNOT00000009977 2 2 2 80 5 124143376 124143395 TTGGGATCGATGAAGTGTCC 60 124143438 124148662 CAGCAACAACACCCTTGAG 59 NA Rattus norvegicus 81 Plcd4 ENSRNOG00000016361 ENSRNOT00000041407,ENSRNOT00000022234 2 2 2 80 9 81831247 81831266 CAACTCCTCTCACAACACCT 60 81831308 81832514 TTCAAGGCCCGTATGTATCC 60 NA Rattus norvegicus 81 Adcy4 ENSRNOG00000020401 ENSRNOT00000067536 1 1 2 82 15 34456421 34456439 AGTATTACTGTCGCCTGGA 58 34456333 34456379 GAGTACATTCTCCATTGTCTCAG 59 NA Rattus norvegicus 81 Bcl11b ENSRNOG00000005776 ENSRNOT00000007602 2 1 3 80 6 131913100 131913665 ACTCAGGTAGAAGAATCAGAGG 59 131913041 131913060 AGGCTCTTCTATCTCCAGAC 58 NA Rattus norvegicus 81 Usp32 ENSRNOG00000027711 ENSRNOT00000081649 1 1 2 80 10 72416981 72416999 ATTACATGAGCCAGCACTG 58 72397050 72416938 AACAGTAAATCACCTCAGCA 57 NA Rattus norvegicus 81 Npb ENSRNOG00000036685 ENSRNOT00000054953 2 1 1 182 10 109786350 109786368 TTTCCACAGGTTCCCATCC 60 109786588 109786607 TTACACTGGAAAGTCCCTCG 60 NA DesignNoJunction Rattus norvegicus 81 Laptm5 ENSRNOG00000011054 ENSRNOT00000015198 1 1 2 80 5 149047761 149060395 CCATCTACCATATAGTCATGAGC 58 149060435 149060453 ACCTGCAGGAGACTTTACC 59 NA Rattus norvegicus 81 Itfg2 ENSRNOG00000006264 ENSRNOT00000084173,ENSRNOT00000064174 3 2 3 80 4 161731674 161731694 CCACTAATCTTCTGAAGCTGC 59 161731540 161731632 GATCCTCAGGATCCACACC 59 NA Rattus norvegicus 81 Man2a2 ENSRNOG00000012055 ENSRNOT00000016281,ENSRNOT00000078982 2 2 2 80 1 142162683 142162701 TACCTAATGCTGGACCGAG 59 142161672 142162640 CACAGAAATTTGGCTCCTGG 60 NA Rattus norvegicus 81 Begain ENSRNOG00000004650 ENSRNOT00000041903,ENSRNOT00000082216 2 2 2 80 6 132943697 132943717 CTATCTGGAGATTGAGCTGAG 58 132942511 132943655 TAGTTGCTCTGAATCCTGC 57 NA Rattus norvegicus 81 Gdpd2 ENSRNOG00000002800 ENSRNOT00000076018,ENSRNOT00000076496 2 2 3 89 X 70565953 70566269 TTCAATGAATTCCTGTTCCGC 60 70566319 70566338 TGCATATGTGACCAGGAGAG 59 NA Rattus norvegicus 81 Osbpl6 ENSRNOG00000010812 ENSRNOT00000091211 2 1 2 80 3 63416324 63421104 CTACAACAGTTCCTTTCAGCG 60 63421145 63421164 ACTCAATGTCTGCACAAAGG 59 NA Rattus norvegicus 81 Exoc1 ENSRNOG00000002144 ENSRNOT00000091230,ENSRNOT00000059814 1 2 3 80 14 34145121 34145139 CAGCCTCTTTCCTAAGCAC 58 34144975 34145080 GTTCACAGCTAATGCATTTGTC 59 NA Rattus norvegicus 81 Strbp ENSRNOG00000010150 ENSRNOT00000087611,ENSRNOT00000066377,ENSRNOT00000090576 1 3 3 80 3 21850537 21850560 GTCTCAAGTATGAACTCATCTCAG 59 21844841 21850501 TCTGTCCATCTACTTCTACCTC 58 NA Rattus norvegicus 81 Herc2 ENSRNOG00000013718 ENSRNOT00000019245 1 1 2 80 1 114453822 114474840 AACAGATATCCAGATGATGGTG 58 114474879 114474899 TTCCTCCTTCTTCTCTTTGTC 57 NA Rattus norvegicus 81 Vcl ENSRNOG00000010765 ENSRNOT00000015179 2 1 2 85 15 3465295 3465313 GAGGTGATTAACCAGCCGA 60 3459790 3465246 ATGATGTCATTGCCCTTGC 59 NA Rattus norvegicus 81 Ceacam6 ENSRNOG00000030331 ENSRNOT00000034553 3 1 2 81 1 81689173 81689259 ATCTGAATGGGTCTCTAGGC 59 81689303 81689321 TGGATCACTATGGAAGGCA 58 NA Rattus norvegicus 81 Rassf5 ENSRNOG00000005342 ENSRNOT00000080035 3 1 2 147 13 47962096 47979433 CTTCAAAGAATGTCTGTAAGGC 58 47961153 47961171 ATGAAACCTGTGTAGGTGC 58 NA Rattus norvegicus 81 Rassf5 ENSRNOG00000005342 ENSRNOT00000008055 3 1 2 81 13 47962104 47992973 CCAACCTTCAACAAGAATGTC 58 47962043 47962063 CAATCTTCTGCTTGATCTCCT 58 NA Rattus norvegicus 81 Agxt ENSRNOG00000023856 ENSRNOT00000029127 2 1 2 80 9 100285260 100285279 TATCAGTGCCTACTCCTGGT 60 100285322 100286252 GATGTCGATGCCTTGTTGG 59 NA Rattus norvegicus 81 Map3k13 ENSRNOG00000025423 ENSRNOT00000078072,ENSRNOT00000035945 1 2 3 81 11 82753120 82753140 GCTGTCAGTCTGGTATTTCTC 59 82749914 82753079 TCATCTCCACTCTTCTGAAGG 59 NA Rattus norvegicus 81 Shkbp1 ENSRNOG00000020882 ENSRNOT00000028348,ENSRNOT00000084586 2 2 2 80 1 84161758 84161866 GCTCCATCTATTATGTAGATGTGC 59 84161701 84161719 CTCGGTAGAGCTCACTGAC 59 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000080221,ENSRNOT00000027950,ENSRNOT00000072426 3 3 7 119 15 34646202 34694159 TCAACACTGAAGGAGGAGAG 59 34646102 34646121 GGAAACCACCACAGTAATGG 59 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000079782,ENSRNOT00000079505,ENSRNOT00000049315 1 3 7 97 15 34668455 34668473 AACACCCAGGTCATCTCTG 59 34668154 34668394 TTGCGTTCCAACTTCAGGA 60 NA Rattus norvegicus 81 LOC100911976 ENSRNOG00000047254 ENSRNOT00000071054 1 1 2 80 1 100713389 100716856 AGTCCTGTTTCGAGGATGG 59 100716899 100716918 CCACCAACACCATATTCCTC 58 NA Rattus norvegicus 81 Fitm1 ENSRNOG00000019019 ENSRNOT00000025725 2 1 1 133 15 34252041 34252060 TAACTCTCGGACGATCTTCG 59 34252506 34252524 CTACACGTCGAGTAGCCAG 60 NA DesignNoJunction Rattus norvegicus 81 Rgp1 ENSRNOG00000016309 ENSRNOT00000064419,ENSRNOT00000021888 3 2 2 80 5 59081657 59081676 GTATCCTGTCTACTCCACCA 58 59081716 59081834 CACTGTAGGAGTATGATTTGGA 57 NA Rattus norvegicus 81 Arhgef1 ENSRNOG00000020130 ENSRNOT00000080840 3 1 4 155 1 81779928 81780024 ACCATTTAGAGGTGAACCCA 59 81783700 81783718 TTAGCATGTCAGCATGCAG 59 NA Rattus norvegicus 81 Cr1l ENSRNOG00000008193 ENSRNOT00000010799 1 1 3 89 13 113840134 113840152 AGAAGGCAGTTCTCAGAGC 59 113836273 113840086 GGGAGTTTACATATCACTTGAGAG 59 NA Rattus norvegicus 81 P2ry4 ENSRNOG00000002953 ENSRNOT00000045907 1 1 1 68 X 70428340 70428358 TGTCTGATGCCATCAGTCC 60 70428053 70428071 CAAGGATTCTGCACTGGTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Eln ENSRNOG00000001469 ENSRNOT00000040069,ENSRNOT00000032780 3 2 2 88 12 25002392 25005302 GAAGTATGGTGCTGGAGGA 59 25005354 25005372 CTCCAATCCCAGGAATTGC 59 NA Rattus norvegicus 81 Slc1a7 ENSRNOG00000011644 ENSRNOT00000016557,ENSRNOT00000090817,ENSRNOT00000077808 3 3 4 80 5 127579968 127596261 GTCTCCAGCTTGATGTCTG 58 127596305 127596323 GTAATATGCCACGGTGAGG 58 NA Rattus norvegicus 81 Gnal ENSRNOG00000010440 ENSRNOT00000086679,ENSRNOT00000025172 3 2 3 81 18 62852095 62852315 GCTATTGTGACAATCGTTTCAG 58 62852357 62852375 CTGACCGAAACTGGTTCTC 58 NA Rattus norvegicus 81 Rec8 ENSRNOG00000019503 ENSRNOT00000026430,ENSRNOT00000081165 1 2 2 80 15 34297862 34297882 CATATCCTAGAGCACCTACAC 57 34297922 34298324 AAGAAGCAAGCTAGGTAAGTC 58 NA Rattus norvegicus 81 Rec8 ENSRNOG00000019503 ENSRNOT00000026430,ENSRNOT00000081165 2 2 2 80 15 34297859 34297877 CAGCATATCCTAGAGCACC 57 34297920 34298321 AAGCAAGCTAGGTAAGTCAG 57 NA Rattus norvegicus 81 Nrf1 ENSRNOG00000008752 ENSRNOT00000080173 2 1 2 116 4 57419079 57443587 AGATGCTAATGGCCTGGTC 60 57443666 57443685 GATATCCTGGTGGTCACTGG 60 NA Rattus norvegicus 81 Kif26a ENSRNOG00000013661 ENSRNOT00000018278,ENSRNOT00000086868 3 2 2 81 6 136749134 136749272 ATGTACCCTACAGGGACCA 59 136749317 136749335 GCAATCATGGTGGTACAGC 59 NA Rattus norvegicus 81 Ctage5 ENSRNOG00000005101 ENSRNOT00000006995,ENSRNOT00000086221,ENSRNOT00000077435,ENSRNOT00000059318,ENSRNOT00000089010 2 5 5 80 6 80255295 80255314 CCTAGAAGACACTGCTTCCT 59 80256813 80257355 GAAGCATTTAACTTGGCTGC 58 NA Rattus norvegicus 81 Ikbip ENSRNOG00000008247 ENSRNOT00000010929 2 1 2 82 7 31792250 31792268 CCGGTTACTGCAAACAGAG 59 31792311 31802343 CGCATTTCTGATACTTGTTGGA 59 NA Rattus norvegicus 81 Ppfibp1 ENSRNOG00000031709 ENSRNOT00000044147 3 1 2 80 4 181426161 181426180 TGGAAGATTCAGAAGGGACG 60 181426223 181427888 TTCATGAATGGGAGCACGT 60 NA Rattus norvegicus 81 Rimbp2 ENSRNOG00000022893 ENSRNOT00000086078 1 1 3 80 12 31578538 31578558 TATACTCAGAGATGCAGCTGG 59 31578599 31580987 TATGGTATTCCTTGAGGGCG 59 NA Rattus norvegicus 81 Wdr20 ENSRNOG00000007333 ENSRNOT00000009709 1 1 2 80 6 135214178 135214199 TTCTTGAAGACTGTCTAGTCAC 58 135214240 135224102 ACAACAAGCCCACTTTACC 58 NA Rattus norvegicus 81 Osbpl5 ENSRNOG00000020713 ENSRNOT00000079454,ENSRNOT00000028119 1 2 2 80 1 216871418 216871732 CAATATGAGGACTACAGCCC 58 216871357 216871377 CTGTAGAGTGTGAAGAATCCC 58 NA Rattus norvegicus 81 Cask ENSRNOG00000060946 ENSRNOT00000091382 1 1 3 80 X 9891457 9949763 GGGTTAAGTACAGAAGATCTAAAGC 59 9949799 9949819 CTCCAACAGCTCTACAATGTG 59 NA Rattus norvegicus 81 Sbno2 ENSRNOG00000013987 ENSRNOT00000077146 3 1 2 81 7 12491071 12501653 TTCCTCAGGATCCTTCATGC 60 12501695 12501715 GGGATATCTGACAGGGAATCC 60 NA Rattus norvegicus 81 Slco6c1 ENSRNOG00000013792 ENSRNOT00000077596,ENSRNOT00000077480,ENSRNOT00000018503,ENSRNOT00000081815 1 4 4 80 9 104698718 104718645 TCGGTCTTAATTCATGGTGC 58 104698657 104698680 CTTTGACAGAGTAAGTAGACTGTG 59 NA Rattus norvegicus 81 Abracl ENSRNOG00000051450 ENSRNOT00000084870 2 1 1 60 1 13171424 13171442 GGTGGAGGAAATTCATCGT 58 13166111 13166131 AAACTTCACACTCAGTTTCCC 59 NA DesignNoJunction Rattus norvegicus 81 Pum2 ENSRNOG00000006180 ENSRNOT00000082598 1 1 2 156 6 33841568 33856955 GATTTGGCTCATCAGGAGG 58 33857075 33857093 GATCTGTTATAGCGGAGCC 58 NA Rattus norvegicus 81 Agrn ENSRNOG00000020205 ENSRNOT00000047854 1 1 2 80 5 173610905 173610924 CTGCAACATCTGCTTGATCC 60 173610411 173610863 CCAGGTTTGTAGTTGCTGAG 59 NA Rattus norvegicus 81 Carm1 ENSRNOG00000031129 ENSRNOT00000048245 3 1 2 90 8 22620571 22620589 GAATGCCTACTGCCTACGA 59 22620643 22620939 ATCCCTGTGTTGGCTAAGG 59 NA Rattus norvegicus 81 Cp ENSRNOG00000011913 ENSRNOT00000016083 3 1 2 92 2 104785114 104785132 AACCTGGTTACTCCACTGC 60 104785184 104788637 CCAGACTTAGTCTCTTGATTTGG 59 NA Rattus norvegicus 81 Cp ENSRNOG00000011913 ENSRNOT00000082627 2 1 2 81 2 104785122 104785140 TACTCCACTGCCATGTGAC 59 104785184 104799771 TGAGACGATGCTTGATTTGG 59 NA Rattus norvegicus 81 Mical2 ENSRNOG00000016244 ENSRNOT00000081595 3 1 2 80 1 177157024 177157045 AGAACATTAAAGAGAAGGCAGC 59 177157083 177158513 GCTTAGACAGGAGTTTATCCTG 58 NA Rattus norvegicus 81 Pknox2 ENSRNOG00000028856 ENSRNOT00000076232,ENSRNOT00000091894,ENSRNOT00000048875 2 3 5 80 8 39404676 39404694 GAGAACTTTGTCCACCAGC 59 39392766 39404634 CTTCACCATCAGATTGTCCAG 59 NA Rattus norvegicus 81 Pknox2 ENSRNOG00000028856 ENSRNOT00000076232,ENSRNOT00000091894,ENSRNOT00000048875 2 3 5 80 8 39404676 39404694 GAGAACTTTGTCCACCAGC 59 39392766 39404634 CTTCACCATCAGATTGTCCAG 59 NA Rattus norvegicus 81 Nalcn ENSRNOG00000004752 ENSRNOT00000089695,ENSRNOT00000006624 3 2 3 90 15 109738253 109738271 CAGAGGAGGAAGTCGACAG 59 109735775 109738200 TATTGGTTTGGGAGCTGAGG 60 NA Rattus norvegicus 81 Fbxw10 ENSRNOG00000003287 ENSRNOT00000091100 2 1 2 93 10 49288915 49288933 AGTTGATGCCAGAGGTGAC 60 49288989 49289049 TAAATCAGAGTCCCTCTGCC 59 NA Rattus norvegicus 81 Myo5a ENSRNOG00000058866 ENSRNOT00000079535 1 1 3 80 8 82151386 82151404 CCATCACCCTGAACAACCT 60 82151444 82153491 GACTGACATTGTACCTTATCTGC 59 NA Rattus norvegicus 81 Tmprss9 ENSRNOG00000032429 ENSRNOT00000066037 1 1 2 99 7 11695642 11695788 AGTTACAGAGATGGCAATTCC 58 11695563 11695581 AGATGTCTGCTTCCTGGTC 59 NA Rattus norvegicus 81 Zfp831 ENSRNOG00000024693 ENSRNOT00000077193 3 1 2 80 3 172723048 172724749 CACCTGAGCTTCCCTATCC 59 172724793 172724811 ACAGTTCTTTCCTCCACCG 60 NA Rattus norvegicus 81 Pfas ENSRNOG00000005193 ENSRNOT00000080769 3 1 2 81 10 55577102 55577120 CACCCTCCTGATCTAGACC 58 55576855 55577057 AAAGACGGCGATCTTTCAG 58 NA Rattus norvegicus 81 Cast ENSRNOG00000010286 ENSRNOT00000014709 2 1 5 99 2 1500247 1500268 CCAGAGTATAGGAAACTTCTGG 58 1455435 1499064 ATGTTGCATCTATAGCATGGTC 59 NA Rattus norvegicus 81 Cast ENSRNOG00000010286 ENSRNOT00000062055,ENSRNOT00000062054,ENSRNOT00000062052 1 3 5 80 2 1494398 1494416 AAGGCAGGAGAAATGTGGT 59 1493434 1494357 TTTCCATCTTTATCCTTGGCTG 59 NA Rattus norvegicus 81 Wars ENSRNOG00000004359 ENSRNOT00000006128,ENSRNOT00000050350 1 2 3 83 6 132773942 132773960 TGTGAAGTAGACGTGTCCT 58 132772510 132773898 AGTGTAATCCTTTCTGATCTGC 58 NA Rattus norvegicus 81 Spsb1 ENSRNOG00000017212 ENSRNOT00000085251,ENSRNOT00000023287 1 2 2 81 5 166915701 166923310 GAACGGACTTGATCCTGAG 58 166915638 166915656 CAGACGTTCCTTTCCTAGC 58 NA Rattus norvegicus 81 Aff2 ENSRNOG00000052572 ENSRNOT00000087617,ENSRNOT00000087990 3 2 2 80 X 153556533 153556918 CAGTATTATGCTACCGATGCT 58 153556473 153556494 TGGAATACTTCATAGCATGGTC 58 NA Rattus norvegicus 81 Jmjd8 ENSRNOG00000019729 ENSRNOT00000026789 1 1 2 80 10 15196966 15197074 CGAATCTCTAGGCAATGACAC 59 15197115 15197134 CGGTAATGTTGGAAGAGTGG 59 NA Rattus norvegicus 81 Nipal1 ENSRNOG00000025882 ENSRNOT00000034642 2 1 2 102 14 38111107 38116057 CATTACCAGAGCAGTGGGA 59 38111023 38111041 TATGAGAACGCTCAGAGCC 59 NA Rattus norvegicus 81 Fbxw12 ENSRNOG00000020720 ENSRNOT00000086509 3 1 4 109 8 117890907 117890925 GTTCCATTTGCCCAGTGTG 60 117889601 117890834 CAGTTGCAATCCCAAGGAG 59 NA Rattus norvegicus 81 Tango2 ENSRNOG00000030245 ENSRNOT00000083049,ENSRNOT00000046594 2 2 2 81 11 86839223 86839246 GGAGTATATTCAGCCAATACTGAG 59 86839286 86839838 GATGGTGTTGGTTCTGGTG 59 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000048704 2 1 8 80 1 226463362 226480826 AAGAAAGCCATCAAGTTGCC 60 226480869 226480887 AGACTCATCATGTGGCGTC 60 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000036168 2 1 8 80 1 226463308 226463326 AAGAACTCCTTGGAGACGG 59 226463369 226471448 GGAGTCCTCGAAATTGATGG 59 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000036180 3 1 8 85 1 226467055 226467073 TTCCTATCCTCCCAAGGAG 58 226467122 226471446 AGTCCTCGAAATTGAGGGA 58 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000036232,ENSRNOT00000036180,ENSRNOT00000047964,ENSRNOT00000007429 1 4 8 80 1 226463360 226467001 AGAAGAAAGCCATCAACGAC 59 226467041 226467062 GATAGGAACTCCATTTCTGCTG 59 NA Rattus norvegicus 81 Cops2 ENSRNOG00000008744 ENSRNOT00000084154,ENSRNOT00000012287 1 2 2 91 3 118111421 118112963 CTGGATAACACTATTCATGGCC 59 118111351 118111369 AGTGCAGTATATCGGGCAC 60 NA Rattus norvegicus 81 Lims2 ENSRNOG00000016021 ENSRNOT00000061054,ENSRNOT00000090923 3 2 2 112 18 24728855 24731481 TCTATGAGTTTGAGGGCCG 59 24731807 24731825 GTTCATGGCCTTGATCACG 59 NA Rattus norvegicus 81 Il9r ENSRNOG00000020630 ENSRNOT00000079290,ENSRNOT00000028008 2 2 2 80 10 15705208 15705229 TTTACCAGAATGTTCCCTCTCC 60 15705269 15705984 CTATCCAGGTCTGGAAGTCC 59 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000082775,ENSRNOT00000087711,ENSRNOT00000068238,ENSRNOT00000064344,ENSRNOT00000044638,ENSRNOT00000007218 2 6 7 85 3 48276298 48278999 GACACTACAGAGACGACCC 59 48279047 48279066 AGCAGTGACTAGAAGGTTCC 59 NA Rattus norvegicus 81 Exoc2 ENSRNOG00000060266 ENSRNOT00000092101,ENSRNOT00000090706,ENSRNOT00000077110 2 3 4 81 17 34832491 34832509 AGTCTCTGAAGAGCTGAGC 59 34832554 34835974 GATTTCAAGTCTGGCCTGC 59 NA Rattus norvegicus 81 Stk10 ENSRNOG00000004217 ENSRNOT00000047011 3 1 2 80 10 17496326 17497930 GTAGAAATAGTTCTTCCTTCCAGG 59 17510922 17510940 GCTTGGCTACAAAGTCTCG 59 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000064785,ENSRNOT00000029878,ENSRNOT00000029865,ENSRNOT00000060292,ENSRNOT00000000814 3 5 5 80 13 55080386 55080404 ATGATCTGGGAGCAGAAGG 59 55079662 55080345 ATATTCTGCACACTTGTTCCTG 59 NA Rattus norvegicus 81 Bsg ENSRNOG00000008414 ENSRNOT00000011275,ENSRNOT00000044275 3 2 2 89 7 12877160 12877178 GCTGATCTGCAAGTCTGAG 58 12876768 12877107 TTGGAGATAGTCTGGTCCC 58 NA Rattus norvegicus 81 Ctnna3 ENSRNOG00000000373 ENSRNOT00000057950,ENSRNOT00000084660 3 2 2 80 20 25064981 25120703 CATCGTGTCAGCTTTGGAC 59 25064919 25064938 TTCACTGTTTGCACTACAGC 59 NA Rattus norvegicus 81 Rpl26 ENSRNOG00000004214 ENSRNOT00000005588,ENSRNOT00000078038 2 2 2 80 10 55494368 55494386 CTACATTGAGCGAGTCCAG 58 55494430 55495384 GTGATAACCACCTTGCTGG 59 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000009741 ENSRNOT00000012681 2 1 2 88 5 134484680 134484698 CTCGAGAAGTTCCCATCCA 59 134477708 134477822 ATGCTCCAAGTGACAACTG 58 NA Rattus norvegicus 81 Tmem209 ENSRNOG00000028219 ENSRNOT00000032772,ENSRNOT00000091255 3 2 2 80 4 57805012 57805033 TTTATCAGAGTGCTATCAACCC 58 57803190 57804973 TATTTCTGCCCTTTGGAAGAC 58 NA Rattus norvegicus 81 Slc7a3 ENSRNOG00000004133 ENSRNOT00000076910,ENSRNOT00000076336 3 2 3 81 X 70974259 70974277 GTCCAGTCAACTCCATCCC 60 70973767 70974217 ACAGTTAGTAGTACAGCAAGCA 60 NA Rattus norvegicus 81 Ptk2 ENSRNOG00000007916 ENSRNOT00000011219 1 1 2 86 7 114523676 114523694 CATGCAGTCTCTGTGTCAG 58 114504783 114507019 ATAATCCCTGGTTGAGGGC 59 NA Rattus norvegicus 81 Sptan1 ENSRNOG00000015396 ENSRNOT00000045827,ENSRNOT00000082672,ENSRNOT00000079108 1 3 5 80 3 8582484 8584234 CAACATCCAGAGCAAGCAC 60 8584277 8584296 ATAACTCCACGGATTCGGTC 60 NA Rattus norvegicus 81 Prom1 ENSRNOG00000003098 ENSRNOT00000004231,ENSRNOT00000082592,ENSRNOT00000084322 1 3 5 109 14 71542388 71542406 ATCTTCCTCAACGTGGTCC 59 71572867 71579459 TCATAGATGGCGACCTCCT 60 NA Rattus norvegicus 81 Cfh ENSRNOG00000030715 ENSRNOT00000060111,ENSRNOT00000017749 3 2 3 80 13 57008468 57008486 CCTTCACAATGATTGGGCA 58 57006167 57008426 GATCTGTTGCAACACATTGAG 58 NA Rattus norvegicus 81 Mreg ENSRNOG00000015774 ENSRNOT00000085619 1 1 2 113 9 79523411 79530240 TGTGTCAGTGGTAACAATCC 58 79523317 79523335 GTCATCATCTGCCTCTGTG 58 NA Rattus norvegicus 81 Polr2m ENSRNOG00000057676 ENSRNOT00000077999 1 1 3 80 8 78009895 78019506 TCTTCTACCCAGCACAACAG 60 78009834 78009852 TCCAGGACTCTTGTGTACG 59 NA Rattus norvegicus 81 Ebf1 ENSRNOG00000028845 ENSRNOT00000076664,ENSRNOT00000076674,ENSRNOT00000071435 1 3 4 80 10 23952934 23969021 CTGGAGTGAGTTGATAACTCCT 59 23969061 23969080 AATGTGACTTCCACAACACC 59 NA Rattus norvegicus 81 Dennd1b ENSRNOG00000011063 ENSRNOT00000043907,ENSRNOT00000075072 3 2 3 81 13 56215359 56216199 CTGAGACACAAGGACAATGAG 59 56216240 56216260 CATGGTGCAAGGTGTATACTG 59 NA Rattus norvegicus 81 Csnk1e ENSRNOG00000013076 ENSRNOT00000088424,ENSRNOT00000018126 3 2 3 102 7 120654790 120654906 GCAAGCTGGCAATACTTCTC 60 120654707 120654725 TGAGGATGAGACATTGGCA 59 NA Rattus norvegicus 81 Tepp ENSRNOG00000013465 ENSRNOT00000082822,ENSRNOT00000018082 3 2 2 108 19 10131817 10136921 CACCAAAGATGATTTCAACGAG 58 10131504 10131524 GTACTTGTGACAGAGCTTCTG 59 NA Rattus norvegicus 81 Eea1 ENSRNOG00000021681 ENSRNOT00000087297,ENSRNOT00000029764 1 2 2 80 7 37141470 37141490 GTGAGAAGCTGATGGATAAGG 58 37141531 37142622 TTTCCTTCAACTGCTCTTCC 58 NA Rattus norvegicus 81 Ccl21 ENSRNOG00000034290 ENSRNOT00000023951 3 1 1 60 5 58198206 58198224 GTCTGGGAAGAAAGGAAGG 58 58198081 58198100 CTTGGAGTCTGTCTGTTCAG 58 NA DesignNoJunction Rattus norvegicus 81 Azin2 ENSRNOG00000051507 ENSRNOT00000085151 1 1 2 80 5 147138370 147138388 GAGACTGCTAAGCTTCGAC 58 147134782 147138326 ATGCACAGAACCATCTTGG 58 NA Rattus norvegicus 81 Ccdc7 ENSRNOG00000050191 ENSRNOT00000073524,ENSRNOT00000075053 2 2 3 80 19 62104070 62104757 AACTGGAGGAGATAAGTAAAGACC 60 62104013 62104033 GTGTAATGCCCAATTTGACGA 60 NA Rattus norvegicus 81 Acr ENSRNOG00000029762 ENSRNOT00000045647 3 1 2 61 7 130546889 130546907 TCCTGAAGGCAAGATTGAC 58 130547602 130547620 TGTCTCTGCACATGAGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Xkr9 ENSRNOG00000040289 ENSRNOT00000081661,ENSRNOT00000062006 2 2 2 90 5 4971314 4971334 GACTTAAAGAAAGCAGGAGGA 58 4959567 4971263 GGACAAACCAATACCTTGTG 57 NA Rattus norvegicus 81 Zfp707 ENSRNOG00000043439 ENSRNOT00000078368,ENSRNOT00000066233 1 2 2 108 7 117002973 117006988 CTACACATGTGGCATGCAG 59 117007060 117007078 TTATTCCAAGGCCCACCAG 60 NA Rattus norvegicus 81 Pla2g4a ENSRNOG00000002657 ENSRNOT00000090693,ENSRNOT00000003630 1 2 2 80 13 67143104 67165134 CGATATGCTGGACACTCCT 59 67143042 67143060 AAGTGTCTTGTTCGCTTCC 58 NA Rattus norvegicus 81 Med12 ENSRNOG00000003848 ENSRNOT00000040334 3 1 3 88 X 71193903 71193924 TTATAAGACCTCTGTGTACCGG 59 71193973 71194161 ACATTCCCTGACTCTGCTG 59 NA Rattus norvegicus 81 Tmem156 ENSRNOG00000026518 ENSRNOT00000032273 3 1 2 80 14 44908630 44908648 TCTGTTCTCTTCAGAGGGC 59 44908691 44917735 GATTGTCCAAGGATAGCCTG 58 NA Rattus norvegicus 81 Pafah2 ENSRNOG00000022288 ENSRNOT00000089070 2 1 2 81 5 152629968 152629988 TTGGACCCTTATGAAGGTCAG 60 152630031 152630970 GTGAACAAACAGACGCGAG 60 NA Rattus norvegicus 81 Calcoco1 ENSRNOG00000048982 ENSRNOT00000089290,ENSRNOT00000070855 2 2 2 80 7 144316260 144316281 GGAGTTAGAGGATGACATCCAG 60 144314478 144316220 ACCATGTCTCTAACCCTGTC 59 NA Rattus norvegicus 81 Col25a1 ENSRNOG00000050706 ENSRNOT00000071463 1 1 3 116 2 235691791 235691810 GCAGATGGTCCTATAGGACC 59 235703211 235704473 TCCATCTTTGCCAGGTAGC 60 NA Rattus norvegicus 81 Klf10 ENSRNOG00000006118 ENSRNOT00000008350,ENSRNOT00000085626 2 2 2 80 7 77159285 77159305 AGTGTCTGATACCTCAGAGGA 60 77159132 77159244 GGAGTCAAACAGAATGCTGG 59 NA Rattus norvegicus 81 Klf10 ENSRNOG00000006118 ENSRNOT00000085626 2 1 2 114 7 77158473 77158494 TTGTTCATGCACTCAGTGC 59 77158377 77158395 CAATGGGAGACAGTCTGGT 59 NA Rattus norvegicus 81 Porcn ENSRNOG00000004819 ENSRNOT00000078392 2 1 2 191 X 15040726 15041146 CATGGGACCTGACAGTCTC 60 15042902 15043006 AACTGAAGCCATGTAGGAGG 60 NA Rattus norvegicus 81 Porcn ENSRNOG00000004819 ENSRNOT00000006491 1 1 2 81 X 15038909 15039041 TCCTTCGCAACAAGAAACG 59 15040850 15040868 AAGTGGAAGGAGACAGCAC 60 NA Rattus norvegicus 81 AABR07065814.1 ENSRNOG00000042305 ENSRNOT00000065808,ENSRNOT00000072280 1 2 2 60 6 142418741 142418764 CAGACTAAAGGGTCATTGAAACTC 60 142418704 142418726 CATAGGTATCGAAGGTGAATCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc6a7 ENSRNOG00000018644 ENSRNOT00000086464,ENSRNOT00000085841,ENSRNOT00000091220,ENSRNOT00000025209 2 4 4 113 18 56316004 56325239 TACTGGAGCCGATATGTCC 58 56315909 56315927 GAGAAACACGATGACCCAG 58 NA Rattus norvegicus 81 Slc6a7 ENSRNOG00000018644 ENSRNOT00000091220 3 1 4 112 18 56307108 56307126 CACTGATGGTACACATGCG 59 56307011 56307032 TGTCTGGTCCATCATGGAC 59 NA Rattus norvegicus 81 Rnh1 ENSRNOG00000016416 ENSRNOT00000091292 2 1 3 105 1 214157220 214159067 GACCAGAAGACTACACTGTG 58 214157134 214157153 TTGGTATTGTTGGATCAGGG 58 NA Rattus norvegicus 81 Smco1 ENSRNOG00000024960 ENSRNOT00000029572 3 1 1 61 11 71757640 71757659 AACCACAACCCTGATATCCT 59 71756189 71756207 GAGCTTGGAGCTTGTTGTC 59 NA DesignNoJunction Rattus norvegicus 81 Slc23a1 ENSRNOG00000061695 ENSRNOT00000084372,ENSRNOT00000078202 2 2 2 80 18 28423981 28423999 TTTGCGTTTCTGGTTCCAG 59 28423815 28423941 GTTACCGTAGATCTCCTCTTCTG 60 NA Rattus norvegicus 81 Slc23a1 ENSRNOG00000061695 ENSRNOT00000084372,ENSRNOT00000078202 3 2 2 81 18 28423982 28424000 CTTTGCGTTTCTGGTTCCA 59 28423815 28423941 GTTACCGTAGATCTCCTCTTCTG 60 NA Rattus norvegicus 81 Osbpl8 ENSRNOG00000026962 ENSRNOT00000058589 1 1 2 81 7 54022218 54022236 TTGAGGGTGAAGAGGAGGA 60 54022279 54022528 GGAACACTAACCTGTGTACAC 59 NA Rattus norvegicus 81 Atp2b1 ENSRNOG00000004026 ENSRNOT00000041354,ENSRNOT00000066174 3 2 2 80 7 41194814 41196137 GATTGGCAAAGCAGGTCTG 60 41196180 41196199 ACCCAGAAGGTATCGATCAC 59 NA Rattus norvegicus 81 Tpd52l1 ENSRNOG00000021478 ENSRNOT00000030327 1 1 2 92 1 28564280 28569651 CGATATGAGGTACTCCATCCG 60 28572307 28572326 GTTGTCTCAACCCTCTCCTC 60 NA Rattus norvegicus 81 Magi2 ENSRNOG00000013962 ENSRNOT00000066643 2 1 2 80 4 11610443 11610464 ATAACCGTTGAGGACTTTATGG 58 11497517 11610406 GCCGTAATAGTTGTCTTCATAGG 59 NA Rattus norvegicus 81 Cyp27b1 ENSRNOG00000046214 ENSRNOT00000084933 1 1 2 84 7 70335917 70335935 CACAGTTTATGTGGCCGAC 59 70335982 70336002 AAGATGAGAACTACAGCGCT 59 NA Rattus norvegicus 81 Tsen15 ENSRNOG00000002352 ENSRNOT00000065521 1 1 2 104 13 69777981 69777999 CTACAGCTCATCTGCCTCC 60 69765630 69777919 GAGAAATATTCTGTTATGGCTGAGG 60 NA Rattus norvegicus 81 Dnm1l ENSRNOG00000001813 ENSRNOT00000002477 2 1 3 80 11 88874546 88875537 CGCGAGACAAGTTAATTCAGG 60 88877141 88877160 GACCACCATCTCCAATTCCA 60 NA Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000066528 1 1 6 80 7 132091566 132091584 AAGTGTCCCTTCTGCTAGG 59 132086608 132091522 CCAGAATCTGAGATGCTGC 58 NA Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000044092 1 1 6 106 7 132099959 132099979 CATATGCTGAAAGAGAAGGCG 60 132095048 132098936 CTGCTGTCCTCTTCATCCC 60 NA Rattus norvegicus 81 Oas1a ENSRNOG00000001369 ENSRNOT00000067176 3 1 3 82 12 41202606 41203217 ATGTCCTAGCATACCAGTCC 59 41205301 41205319 TTCGGAGATGAGGATGGTG 59 NA Rattus norvegicus 81 Mtus1 ENSRNOG00000010748 ENSRNOT00000079006 3 1 4 143 16 54293337 54298749 AAGTCTCTGTTTGTGGGCT 59 54298856 54298874 GTTCTTCCTCCTCAGGCAG 60 NA Rattus norvegicus 81 Ttc26 ENSRNOG00000027617 ENSRNOT00000031193,ENSRNOT00000078066 2 2 2 80 4 66144873 66146418 AGAGAACCCAAAGAGACCC 59 66146459 66146480 CCTGATGATATACTCCACTTGG 58 NA Rattus norvegicus 81 Nexn ENSRNOG00000012512 ENSRNOT00000066780 1 1 3 80 2 257472583 257474715 AAGGCAGAGATTAAAGACATGC 59 257472524 257472542 GAGCTTTGGGACATAAGCC 59 NA Rattus norvegicus 81 Nexn ENSRNOG00000012512 ENSRNOT00000066780 3 1 3 81 2 257472583 257474714 AGGCAGAGATTAAAGACATGC 59 257472522 257472541 GTGAGCTTTGGGACATAAGC 59 NA Rattus norvegicus 81 Rbm3 ENSRNOG00000005387 ENSRNOT00000007367,ENSRNOT00000087033 1 2 2 80 X 15099610 15099630 TCAACTTCAACACTGATGAGC 59 15099672 15099967 CCTTGACAACAACCACCTC 59 NA Rattus norvegicus 81 Clec10a ENSRNOG00000018715 ENSRNOT00000025308,ENSRNOT00000080323 1 2 2 93 10 56768863 56769031 GAAAGGCTTTACGCACTGG 60 56769088 56769106 ATCTGAGGTGAAGTGTGCA 59 NA Rattus norvegicus 81 Rapsn ENSRNOG00000011208 ENSRNOT00000081160 3 1 2 80 3 79861436 79865432 CCCAGGTCAAGGACTATGAG 59 79865475 79865493 TCCAGCCTTTGCCATAGTC 60 NA Rattus norvegicus 81 Podxl ENSRNOG00000012495 ENSRNOT00000077406,ENSRNOT00000016991 1 2 3 87 4 58839566 58875536 CCAGGATAATGGAAATAAGACTGAC 60 58839503 58839521 ATTGCTTGGCTGGTTTGTC 59 NA Rattus norvegicus 81 Srrm1 ENSRNOG00000018194 ENSRNOT00000056105 2 1 2 80 5 153685041 153685060 GGAGACATTCTCCTTCTCGG 60 153682981 153684999 TCCTCCTTCTACTACGAGGG 60 NA Rattus norvegicus 81 Pcsk1n ENSRNOG00000007112 ENSRNOT00000009794 1 1 1 64 X 15325015 15325033 GAGACTCCTGATGTGGACC 59 15324563 15324581 GAACTTCCGGTGAGGATCC 60 NA DesignNoJunction Rattus norvegicus 81 Chodl ENSRNOG00000001915 ENSRNOT00000031889,ENSRNOT00000090878 2 2 2 80 11 17549422 17549443 CCTTTACCAGTGGAATGATGAC 59 17549482 17553325 TCTGTTGGATGAATCTCTGGT 59 NA Rattus norvegicus 81 C1galt1 ENSRNOG00000007804 ENSRNOT00000078680,ENSRNOT00000010375 2 2 2 83 4 33929642 33929660 ACATTCAGACGACAGTGGA 59 33929704 33933646 GTGTTCTCATCTTTATGTTGGC 58 NA Rattus norvegicus 81 LOC100359687 ENSRNOG00000045785 ENSRNOT00000039083 1 1 2 143 8 56411933 56451242 CAAGGTACCTCGGTAGAGTC 59 56451348 56463486 TTCTTGCAGACTTTGCAGC 59 NA Rattus norvegicus 81 Tmem106b ENSRNOG00000006206 ENSRNOT00000090874 3 1 2 82 4 39519623 39519643 CCATACGTGGAGTTTACTGGA 60 39519687 39521296 AGGATGTTCTCCCTAGGGA 59 NA Rattus norvegicus 81 Adgrl2 ENSRNOG00000032660 ENSRNOT00000045905,ENSRNOT00000081945 3 2 5 83 2 258805539 258805558 CCAGATTCTAGCAGGTTGGA 59 258804342 258804670 ATCTTCATAGCCAGGTAAGTCC 60 NA Rattus norvegicus 81 Zfp955a ENSRNOG00000048577 ENSRNOT00000082664,ENSRNOT00000073235 3 2 2 80 7 15785798 15786679 CAGAGAAATCGGAGAATTCAGG 59 15786720 15786738 CTGTTGGTGGGTCTTTCCA 60 NA Rattus norvegicus 81 Ppp2r5e ENSRNOG00000005045 ENSRNOT00000006755 1 1 2 81 6 98437627 98437645 ACACAAACAGTTCCTGGTG 58 98435714 98437582 CCTAATAACCTGGGCATGG 58 NA Rattus norvegicus 81 Myc ENSRNOG00000004500 ENSRNOT00000006188 2 1 1 69 7 102586852 102586871 AATTTCCTTTGGGAGGTGGA 59 102588490 102588508 TCCTGTTAGCGAAGCTCAC 60 NA DesignNoJunction Rattus norvegicus 81 Abcb6 ENSRNOG00000018697 ENSRNOT00000025627 3 1 2 80 9 82378288 82378306 CAGCATGTTCTTCAATGCC 58 82377660 82378248 GTGACCATAATAGTGAGGATGAG 58 NA Rattus norvegicus 81 Map3k9 ENSRNOG00000007271 ENSRNOT00000009693 1 1 2 80 6 105465157 105467549 TCAGGAGATGAAGGATCCC 58 105465095 105465113 CAAGTGGAAGTGTGGAGAC 58 NA Rattus norvegicus 81 Msantd3 ENSRNOG00000008159 ENSRNOT00000011273,ENSRNOT00000083796 2 2 2 80 5 64294800 64294819 AGCTCTACTTCCTTCAGAGC 59 64294861 64303956 AAACAGCAAAGGACTCTTGG 59 NA Rattus norvegicus 81 Myo16 ENSRNOG00000016483 ENSRNOT00000022742 1 1 2 80 16 84603312 84614348 CTGTCACCAACGGTTTAGC 59 84603250 84603271 GTCTCTGAAATGATGAAGTCCC 59 NA Rattus norvegicus 81 Wdr41 ENSRNOG00000025462 ENSRNOT00000067022,ENSRNOT00000036748 1 2 2 81 2 24670392 24670412 TACACTGAACTGCTGGTACTG 60 24670455 24689819 CAGATGCAAACCTGTAGCC 59 NA Rattus norvegicus 81 RT1-Db2 ENSRNOG00000030431 ENSRNOT00000083085 2 1 2 85 20 4120112 4124691 ATCTGAGAGGATCAGTGTCTC 59 4124738 4124756 GTGACATTCACTCCTGCTG 59 NA Rattus norvegicus 81 Prkar2a ENSRNOG00000020284 ENSRNOT00000088705 1 1 2 81 8 117520061 117524681 ACACAGTAGAACAGCTTTCTC 58 117524724 117524742 CCTTGGTCAATGACATGCT 58 NA Rattus norvegicus 81 Vcan ENSRNOG00000029212 ENSRNOT00000063821 1 1 4 80 2 18522663 18552905 GCTTTAAACGACCTGATCTCTG 60 18522604 18522625 ACACATAGGAAGTCTCAGTAGG 59 NA Rattus norvegicus 81 Ntrk3 ENSRNOG00000018674 ENSRNOT00000041839 3 1 4 80 1 139898180 139943413 TACTGATTACTACAGGGTGGG 58 139898120 139898138 AACTTCCGGTACATGATGC 58 NA Rattus norvegicus 81 Atp6v0a2 ENSRNOG00000052704 ENSRNOT00000083401 2 1 3 80 12 37390229 37391582 CTAGAAATGCAGGAGCAGC 59 37390167 37390186 GTTCTTCCTCAGCTTCTCCT 59 NA Rattus norvegicus 81 Atp6v0a2 ENSRNOG00000052704 ENSRNOT00000083401 3 1 3 81 12 37390230 37391584 TTCTAGAAATGCAGGAGCAG 58 37390168 37390186 TTCTTCCTCAGCTTCTCCT 58 NA Rattus norvegicus 81 Lss ENSRNOG00000054549 ENSRNOT00000081903,ENSRNOT00000078412 2 2 4 80 20 12861795 12861813 AGCACAGAAGAACAACGTG 59 12861337 12861752 TTGAGGAGTCCATACACCAC 59 NA Rattus norvegicus 81 Ablim2 ENSRNOG00000007882 ENSRNOT00000091652 1 1 4 80 14 80054837 80056440 CGCGAGAGTATAAGATTTATCCC 59 80054779 80054797 GGTCTACATCTTTGGGCAG 58 NA Rattus norvegicus 81 Gsta1 ENSRNOG00000013484 ENSRNOT00000085195,ENSRNOT00000018325 3 2 2 80 9 27441384 27441404 AGCCATTCTCAACTACATTGC 59 27440318 27441342 GCATACATGTCGATGAGGG 58 NA Rattus norvegicus 81 Ptprf ENSRNOG00000019977 ENSRNOT00000078302 3 1 2 82 5 137084514 137084534 TGGTTCAAAGACTTCCTTCCT 59 137079263 137084470 CTGATTGGTGAACCACCTG 59 NA Rattus norvegicus 81 Slc35f2 ENSRNOG00000009014 ENSRNOT00000080227 3 1 2 80 8 58382834 58384056 GAGAGGATAATTCAGGGAGTG 57 58384098 58384116 CGTTAGACACAGCGTACAG 58 NA Rattus norvegicus 81 Foxp3 ENSRNOG00000011702 ENSRNOT00000015641,ENSRNOT00000077391 1 2 3 80 X 15756745 15756763 CTTCAGACAGCTTGTTTGC 58 15756026 15756701 TGTTGTGGAAGAACTCTGG 57 NA Rattus norvegicus 81 Foxp3 ENSRNOG00000011702 ENSRNOT00000015641,ENSRNOT00000077391 3 2 3 80 X 15756744 15756762 TTCAGACAGCTTGTTTGCT 58 15756025 15756701 ATGTTGTGGAAGAACTCTGG 58 NA Rattus norvegicus 81 Dpp4 ENSRNOG00000030763 ENSRNOT00000085426,ENSRNOT00000077788 1 2 3 80 3 48293650 48293672 CACATCTATTCCCACATGAGC 59 48293582 48293600 GTGCTCTTGAGTAAGCTGC 59 NA Rattus norvegicus 81 Spon1 ENSRNOG00000058003 ENSRNOT00000092099 3 1 2 81 1 178911762 178924160 CTGTCAATGTGAGAGCAGC 59 178924204 178924223 CCCATCATGGTTAGGAAGGA 59 NA Rattus norvegicus 81 Fars2 ENSRNOG00000016135 ENSRNOT00000080031 2 1 2 83 17 29026164 29139968 CATCCAAAGATTATGGTGTATGAGG 60 29026105 29026123 GCATTTGCCTCTTCCACAC 60 NA Rattus norvegicus 81 Pcmtd1 ENSRNOG00000005730 ENSRNOT00000061903,ENSRNOT00000007769 2 2 2 94 5 12143591 12143609 GAGTCCAGAAAGACCACGA 59 12141196 12143538 CATAATCTGTGTCAACTGATCCTC 59 NA Rattus norvegicus 81 Lrrc43 ENSRNOG00000008470 ENSRNOT00000011240 2 1 2 150 12 38520429 38524587 CGGAAGCTGGAATAAATCACG 60 38520299 38520317 CATAGCCCATGGAGAGTGG 60 NA Rattus norvegicus 81 Gsta3 ENSRNOG00000056847 ENSRNOT00000077372 1 1 2 80 9 27402399 27402418 CTTCACTACTTCGATGGCAG 59 27402458 27403400 AGATTGTTTCTCCTCTACTCCA 58 NA Rattus norvegicus 81 Hnrnpm ENSRNOG00000007921 ENSRNOT00000036172,ENSRNOT00000011047 3 2 2 80 7 18530921 18533485 ACTTCCTCATGGACTTGGT 58 18530859 18530877 CCTTTGTTCAGGTGGTTGG 59 NA Rattus norvegicus 81 Dync2li1 ENSRNOG00000005151 ENSRNOT00000006953,ENSRNOT00000068030 3 2 2 80 6 7920208 7920227 ACCCTGAGAAGAGAAAGGTG 59 7920270 7924075 TGCTGGTAAACATCAGCGA 60 NA Rattus norvegicus 81 Krt12 ENSRNOG00000011986 ENSRNOT00000079297,ENSRNOT00000016337 2 2 2 81 10 87329939 87331032 GGATAGCCAAGGTGATGGT 59 87329876 87329896 TTTAGAGGAGTCGACTGATGG 59 NA Rattus norvegicus 81 Hdgfrp3 ENSRNOG00000019740 ENSRNOT00000026754,ENSRNOT00000076414 1 2 2 81 1 143718887 143723670 CATGAAACTGCATTTCTAGGTC 58 143718827 143718846 TCCGTTTGTTTGACTTTCCA 58 NA Rattus norvegicus 81 Rgs5 ENSRNOG00000002730 ENSRNOT00000079593 3 1 2 151 13 88000955 88000976 TGAAGTCTGAATTCAGTGAGGA 59 88001088 88002684 GTGGTCAATGTTCACCTCG 59 NA Rattus norvegicus 81 AABR07067267.1 ENSRNOG00000011124 ENSRNOT00000014788 2 1 1 64 9 37057152 37057170 GGTGCTTCTCGTTTCAGTG 59 37057200 37057218 TTGGGATAGTGCTGAGGTG 59 NA DesignNoJunction Rattus norvegicus 81 Adamts10 ENSRNOG00000008857 ENSRNOT00000086336,ENSRNOT00000011849 3 2 2 81 7 18416359 18416379 CACGTAGTATACAAGCGTTCC 59 18416420 18417752 CCTTCCATGGTTTCTCATCTC 59 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000073696 2 1 6 87 13 84491837 84491860 TCTATTACTGTATCATCACCACCC 60 84491905 84522956 TAACCTTTGCGAACCAACAC 59 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000064168 2 1 6 127 13 84513678 84513696 CTTCCTGTTCTTCGTGCTG 59 84513787 84522958 GGTAACCTTTGCGAAAGGC 60 NA Rattus norvegicus 81 Acad9 ENSRNOG00000014178 ENSRNOT00000019108,ENSRNOT00000089353 1 2 2 80 2 122802604 122803029 TTACTCCGATTTGGAAAGACCA 60 122803069 122803088 GCCATACAGGTTGATGAGGA 60 NA Rattus norvegicus 81 Ankrd13b ENSRNOG00000014742 ENSRNOT00000056110,ENSRNOT00000019946 3 2 2 80 10 62687872 62687890 CCAATGTGGAGCTCATCAC 59 62687933 62688825 GTGTCTTACAGCCTTTGACC 59 NA Rattus norvegicus 81 Slc21a4 ENSRNOG00000010388 ENSRNOT00000000026,ENSRNOT00000015112,ENSRNOT00000051461,ENSRNOT00000049303 3 4 5 82 4 176271126 176271144 AGCTTCCTGCCTAAGTACC 59 176270295 176271085 GGTAAGTTATAAACACCCATGAGG 59 NA Rattus norvegicus 81 Krt26 ENSRNOG00000033617 ENSRNOT00000085677 3 1 2 80 10 87245854 87245875 GACTTAGAAATACAACGTGAGG 57 87245673 87245813 CAGAACTCCCATTTCCTCC 58 NA Rattus norvegicus 81 Il36rn ENSRNOG00000005751 ENSRNOT00000091805,ENSRNOT00000007593 1 2 2 80 3 1388404 1389496 GGTAATTAAAGGTGAGGAGATCAG 59 1389534 1389553 TGAACACCCAGGATTACAGG 60 NA Rattus norvegicus 81 Snap25 ENSRNOG00000006037 ENSRNOT00000007998 1 1 3 89 3 129776862 129778068 GTAGCAGAATCAAACATTCCAG 58 129779762 129779783 GTAAGCATCACTGGATTTAAGC 58 NA Rattus norvegicus 81 Snap25 ENSRNOG00000006037 ENSRNOT00000007998 2 1 3 96 3 129767317 129767335 TATGTTGGATGAGCAAGGC 58 129776865 129778070 GTCTGGAATGTTTGATTCTGC 58 NA Rattus norvegicus 81 Hnrnpf ENSRNOG00000014562 ENSRNOT00000083843,ENSRNOT00000019529,ENSRNOT00000091765 2 3 3 112 4 149972333 149972352 TACAGAAGGCATCTGTGGTG 60 149977046 149977064 CATAGCCTTCACCTCCCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Krt20 ENSRNOG00000027139 ENSRNOT00000034889 1 1 3 81 10 87346421 87347101 CCGTAGCTTCCAAGATGGA 59 87346016 87346034 TCCACGTTGACATTGTTGC 59 NA Rattus norvegicus 81 Slc4a1 ENSRNOG00000020951 ENSRNOT00000028445,ENSRNOT00000092102 2 2 2 80 10 90300747 90300765 TTTGCTTCTGTTCTACCCG 58 90300172 90300704 TTTACTGACAATCAGCGTGG 59 NA Rattus norvegicus 81 LOC691135 ENSRNOG00000015271 ENSRNOT00000020751,ENSRNOT00000084806 2 2 2 137 1 69615629 69618792 GGGCTGTGTAACCATTGAG 59 69618892 69626054 TACCGATAAACCAGTGAGGA 58 NA Rattus norvegicus 81 L1cam ENSRNOG00000061230 ENSRNOT00000080945 2 1 2 80 X 156926054 156926072 GACAAGGAGGACACTCAGG 59 156926113 156926626 CTCTTCATTGTCACTGTACTCG 59 NA Rattus norvegicus 81 L1cam ENSRNOG00000061230 ENSRNOT00000084390 3 1 2 80 X 156926064 156926082 ACACTCAGGTAGATTCCGA 57 156926220 156926624 CTTCATTGTCACTCTCCAGG 58 NA Rattus norvegicus 81 Otos ENSRNOG00000016567 ENSRNOT00000090382,ENSRNOT00000022220 2 2 2 140 9 99821633 99821651 GCACTTGGTAAGGATGCAG 59 99820694 99820712 GAGAAAGGCCAGTAAGGCA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Zfp472 ENSRNOG00000004572 ENSRNOT00000084634 3 1 2 92 7 15242240 15247388 AGGAAATGGAGCCAGTGAC 60 15247442 15247462 TGTAGAGCTTCTTCTGACTGG 59 NA Rattus norvegicus 81 Ptpn18 ENSRNOG00000013415 ENSRNOT00000067928 1 1 2 82 9 40972109 40972127 AGTGAGGAGCTTCTTGGAG 59 40972171 40975097 CCTTAATGTCGCTGAACTCAC 59 NA Rattus norvegicus 81 Ccdc17 ENSRNOG00000023216 ENSRNOT00000090852,ENSRNOT00000034464 3 2 2 80 5 135442343 135442484 GACTCCGGAGATTATGGCA 59 135442525 135442546 TCCTCTGTCAGTCTCTTTAGAG 59 NA Rattus norvegicus 81 Slc16a7 ENSRNOG00000007839 ENSRNOT00000058036,ENSRNOT00000078014,ENSRNOT00000077670 1 3 3 80 7 68447234 68449554 CCTGGCTGGTAAATTGCTC 59 68447172 68447193 CCTGATGATAACACGACTATCC 58 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000014230,ENSRNOT00000083233 3 4 10 81 10 87118086 87120488 GATGGAGACAGAGGAGACAC 59 87118024 87118043 GTCCTCAGGAGTAGATGTGC 60 NA Rattus norvegicus 81 Clec2l ENSRNOG00000029644 ENSRNOT00000077486,ENSRNOT00000067097 3 2 2 80 4 66418801 66420760 CCAGACACATTCACCATCTC 58 66420803 66420821 CGTCAGACACTCTGTTGAC 58 NA Rattus norvegicus 81 LOC100910137 ENSRNOG00000001160 ENSRNOT00000001534,ENSRNOT00000079043 2 2 2 81 12 46989767 46989785 TTTCTCAAAGGAGACGGCT 59 46988297 46989724 CCTTGATTGCTTTCTGGACAC 60 NA Rattus norvegicus 81 Lrrc45 ENSRNOG00000045926 ENSRNOT00000082551,ENSRNOT00000071487,ENSRNOT00000082209 1 3 3 89 10 109900902 109901401 AACTGAAAGTGGTCGGGAG 60 109901454 109901472 CTTTGAGCCGCAGTTTCTC 60 NA Rattus norvegicus 81 Bend6 ENSRNOG00000052376 ENSRNOT00000078157 3 1 2 81 9 38344792 38345758 GAAATCATAGGAGTAACGAAGC 57 38345798 38345818 ATTGAGCTTCTGTCCATATCC 58 NA Rattus norvegicus 81 Fank1 ENSRNOG00000018327 ENSRNOT00000081610,ENSRNOT00000024751 3 2 2 80 1 205911925 205911943 CAGTGGCTTAGGTTCTCCA 59 205911987 205922924 CTTTGTTGCGTAGCCTGTG 60 NA Rattus norvegicus 81 Ampd2 ENSRNOG00000019240 ENSRNOT00000026051 2 1 2 143 2 210868865 210872890 AGAAGCTCGAAGTGGTCTG 59 210868501 210868758 CTGAACAACTCCTCAGCGA 60 NA Rattus norvegicus 81 Nrsn2 ENSRNOG00000023935 ENSRNOT00000032881,ENSRNOT00000081153 1 2 2 106 3 147844223 147849279 GTTGTGTTGGAAGGTCACC 59 147844135 147844156 CGTTAACAAGCTCTAGTTTGGG 60 NA Rattus norvegicus 81 Ribc1 ENSRNOG00000003081 ENSRNOT00000091261,ENSRNOT00000004184 1 2 2 130 X 21702158 21702367 AGATATGGCTTATGGTGCCA 59 21702047 21702065 TGAATTGCTGCCTTTGCTC 59 NA Rattus norvegicus 81 Tmprss2 ENSRNOG00000001976 ENSRNOT00000066413,ENSRNOT00000002713 1 2 2 80 11 38075287 38077323 AGACATGGGATACAAGAACAG 58 38075227 38075246 TTCAGCTTCATAAAGCTCGT 58 NA Rattus norvegicus 81 LOC100910563 ENSRNOG00000002628 ENSRNOT00000080755 3 1 2 85 1 67848151 67848170 TGCTTACAGGACTGAATTGG 58 67832563 67848105 GGAAATTTGAAGGAAACGTGG 58 NA Rattus norvegicus 81 Aggf1 ENSRNOG00000029304 ENSRNOT00000085857 1 1 2 101 2 25088069 25088087 TTATCAGACATCCAGCACG 57 25087850 25088007 CTTGAACCTTTCTTCTCTTCAG 57 NA Rattus norvegicus 81 Smarca2 ENSRNOG00000011931 ENSRNOT00000080124 3 1 2 80 1 244757838 244776570 ACAAGGACAGGAAAGAATCC 58 244776612 244776631 TTGTGACAGAGAAGCATGAC 58 NA Rattus norvegicus 81 Asb8 ENSRNOG00000010099 ENSRNOT00000013704,ENSRNOT00000079377 3 2 2 79 7 139730131 139730149 GAGTTGCTCCTGGAGAAGG 60 139726049 139726068 TTCTCTGCTGCATAGTGGAG 60 NA DesignNoJunction Rattus norvegicus 81 Krt17 ENSRNOG00000026371 ENSRNOT00000005382,ENSRNOT00000084493 3 2 2 81 10 88160540 88160558 AAGAGCGAGATCTCTGAGC 59 88119257 88160495 GGGATGCTTTCATGCTGAG 59 NA Rattus norvegicus 81 Krt17 ENSRNOG00000026371 ENSRNOT00000005382,ENSRNOT00000084493 2 2 2 80 10 88160539 88160557 AGAGCGAGATCTCTGAGCT 60 88160388 88160495 GGGATGCTTTCATGCTGAG 59 NA Rattus norvegicus 81 Agap2 ENSRNOG00000025584 ENSRNOT00000084012 2 1 2 89 7 70372196 70372214 ACAACAGTCAAAGTCCCAG 58 70372267 70372286 TCATATCCTGACCAACCCA 58 NA Rattus norvegicus 81 Agap2 ENSRNOG00000025584 ENSRNOT00000031230 3 1 2 81 7 70372587 70373498 CCTTAGCACCGACTGTACC 60 70373543 70373561 CTGCTTCTTCACCATGGGA 60 NA Rattus norvegicus 81 Magi3 ENSRNOG00000019885 ENSRNOT00000088095,ENSRNOT00000026952 3 2 2 80 2 206591827 206591847 TCAGAAAGGATCGATTGACCA 59 206575542 206591785 CTTGTAGTGCATGGGATGG 58 NA Rattus norvegicus 81 Ppp1ca ENSRNOG00000018708 ENSRNOT00000025282,ENSRNOT00000091680 1 2 2 87 1 219441020 219441543 ATGATGAATGCAAGAGACGA 57 219441593 219441611 TCTACAATGGCTGCAATGG 58 NA Rattus norvegicus 81 Tcf12 ENSRNOG00000057754 ENSRNOT00000081185 3 1 3 80 8 78421174 78421195 ACACCATACTACTCATTCTCTG 57 78415909 78421135 TGCTTGTAAAGGATCTAGAGC 58 NA Rattus norvegicus 81 Arhgap22 ENSRNOG00000024728 ENSRNOT00000035915 2 1 2 91 16 9602072 9607680 CTGTTTGACAGGTTTCTGGA 58 9607734 9607752 ATGTTAGGGCCAAAGACAG 57 NA Rattus norvegicus 81 Arhgap22 ENSRNOG00000024728 ENSRNOT00000082208 3 1 2 80 16 9606670 9607679 GATACATCTGCAGGTTTCTGG 59 9607721 9607739 AGACAGTTGCCAAGTTCTG 58 NA Rattus norvegicus 81 Tnnt3 ENSRNOG00000020332 ENSRNOT00000051425,ENSRNOT00000063918 3 2 5 112 1 215672160 215673425 CAGGAGGAAGAGGAAGTCC 59 215679172 215679190 TTCTGACGCTTCTTCTGGA 59 NA Rattus norvegicus 81 Mapk8 ENSRNOG00000020155 ENSRNOT00000065216,ENSRNOT00000083933 3 2 2 81 16 9650715 9650738 CTACCTTCTCTATCAAATGCTGTG 59 9640819 9650678 ATTACTAGGCTTTAAGTCCCGA 59 NA Rattus norvegicus 81 Oxr1 ENSRNOG00000056487 ENSRNOT00000081948,ENSRNOT00000084940 2 2 5 80 7 80775933 80777742 CAGACGTCTCCAGATCACC 60 80777786 80777804 GATTCTGGCTCCAGGTCTG 60 NA Rattus norvegicus 81 Nup62 ENSRNOG00000048733 ENSRNOT00000074847 2 1 1 135 1 100811778 100811796 GTTGAAGAGTCGGTGTGAG 58 100824888 100824906 GCCTCCAAAGTTAAACCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Srebf2 ENSRNOG00000007400 ENSRNOT00000082603,ENSRNOT00000056041 3 2 2 80 7 123412247 123412767 ACTGGAGTCAGGTTCTGGA 60 123412809 123412829 AAGACAATCACACCGTTTAGC 59 NA Rattus norvegicus 81 LOC100362827 ENSRNOG00000030748 ENSRNOT00000042543 1 1 1 60 2 57728908 57728927 GCTGAAGGGAATGCTAAAGG 59 57728867 57728885 CAGATCTTCTCTGTGGCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362827 ENSRNOG00000030748 ENSRNOT00000042543 2 1 1 60 2 57728892 57728911 AAGGAAACAAAGCCAAGGTG 59 57728851 57728869 TTAGCAGACAACCTTGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cox6b1 ENSRNOG00000034161 ENSRNOT00000045155 3 1 1 61 2 211337343 211337362 AACCAGACTAAGAACTGCTG 58 211337386 211337404 GTCATTGCCTTCTCACAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr61 ENSRNOG00000012803 ENSRNOT00000017239,ENSRNOT00000090439 3 2 2 80 8 59298350 59299800 CACTTTGTTTCCAGTTCATCC 58 59298290 59298311 GTCAAAGAAGGTGTGAATACAG 57 NA Rattus norvegicus 81 Coro2a ENSRNOG00000008901 ENSRNOT00000089789,ENSRNOT00000011787 2 2 2 80 5 62164778 62165734 TGATTACAAGGTGATGGTGTG 58 62164718 62164737 TGGTGACAGTTGATTGTCCT 59 NA Rattus norvegicus 81 Akap8l ENSRNOG00000006355 ENSRNOT00000090673 2 1 2 94 7 14363847 14364172 GGTTTAGGCTTTGTCCAAGG 59 14357846 14363796 CAAGTTCCATATCCATAATCACAGG 60 NA Rattus norvegicus 81 Schip1 ENSRNOG00000009276 ENSRNOT00000057473 1 1 2 130 2 172349988 172458485 TCTGCACAGAAGAATGAGAG 57 172322176 172349897 CTTTGTAGTCTCGAGGAAAGG 58 NA Rattus norvegicus 81 Olr655 ENSRNOG00000057654 ENSRNOT00000082255 2 1 2 60 3 77153137 77153156 GCGTTTCTCACATTACAGTG 58 77196833 77196854 CGCATATACACAAATATGCAGG 58 NA DesignNoJunction Rattus norvegicus 81 Rims1 ENSRNOG00000011000 ENSRNOT00000083915 2 1 5 93 9 28732773 28732791 TGATGGATGTGGCCATCTC 60 28667071 28732719 ATACCTTTCATTGTTCGATCGC 60 NA Rattus norvegicus 81 Becn1 ENSRNOG00000020513 ENSRNOT00000027868,ENSRNOT00000082010 1 2 6 80 10 89217313 89217332 ATAGCTTCACTCTGATCGGG 59 89217147 89217270 GGTCTCCAGTGACCTTGAG 59 NA Rattus norvegicus 81 Svop ENSRNOG00000000693 ENSRNOT00000000874,ENSRNOT00000084511 1 2 2 80 12 48345339 48346500 ATTGGAAGAAATGTGCTAACCC 59 48346541 48346559 GTAAACGTAGGCTGCTTGG 59 NA Rattus norvegicus 81 Pxn ENSRNOG00000001149 ENSRNOT00000064115,ENSRNOT00000047466,ENSRNOT00000081134 1 3 3 81 12 46801167 46801915 ATCTTGGATAAAGTGGTGACAG 58 46801107 46801125 CAAAGAAGGCTCCACACTG 59 NA Rattus norvegicus 81 Trim23 ENSRNOG00000012354 ENSRNOT00000016649 1 1 2 104 2 34255467 34258835 TGGTGAAGGTTCTGGAGTG 59 34258902 34258921 GACAGTCATGACAGACTGTG 58 NA Rattus norvegicus 81 Rgs12 ENSRNOG00000030568 ENSRNOT00000081570 2 1 3 168 14 81014710 81023368 TTTCATTGACCAGCAGTCTG 59 80995558 80995576 CTCAAATGACACTGCCCAG 59 NA Rattus norvegicus 81 Unc5c ENSRNOG00000029071 ENSRNOT00000082287 3 1 2 85 2 247248625 247281849 AACCTCCGGTCTCATTGTG 60 247281898 247281916 ACCAGTAATCTTCAGGCCC 59 NA Rattus norvegicus 81 Med13l ENSRNOG00000001120 ENSRNOT00000042331 2 1 3 147 12 43462062 43462080 GGAGTGCATCCTTAACAGG 58 43457312 43459914 AAGTTTATGGCACCTGGAG 57 NA Rattus norvegicus 81 Nfrkb ENSRNOG00000008278 ENSRNOT00000011223 1 1 2 80 8 32545797 32545906 ACCAGGCTTTCTGTAAGGA 58 32545945 32546701 GAACCACATAGTCAGTTCTTACTC 59 NA Rattus norvegicus 81 Pkhd1l1 ENSRNOG00000004398 ENSRNOT00000005958 2 1 2 80 7 83501693 83502113 GCAGCAATTGAGATAAACAGAG 58 83502154 83502172 GCGGTATCCTACTCTTCCA 58 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000048130 ENSRNOT00000037662 1 1 2 80 8 118402982 118403000 ATGAGGCACGTGATCTCAC 60 118405414 118408120 CCTCTTCTGGTCTTCCAGC 60 NA Rattus norvegicus 81 Tcirg1 ENSRNOG00000017220 ENSRNOT00000023425 2 1 2 86 1 219136777 219137081 TTAGAGACCTCAACGAATCGG 60 219136711 219136729 TGAAGGTCTTCTCCAGCTC 59 NA Rattus norvegicus 81 Arhgap1 ENSRNOG00000016610 ENSRNOT00000067318,ENSRNOT00000079118 1 2 2 80 3 80575061 80575079 CAGCAGGTTCTCCAAACTC 59 80575122 80575279 GGCAGATACCTGTACAAGGA 59 NA Rattus norvegicus 81 Wnk4 ENSRNOG00000020441 ENSRNOT00000076366 3 1 3 95 10 89183379 89183398 GAAGTTGAGATGCTCAAGGG 59 89183455 89184386 AATCTCCTCAGGTACCTGAC 58 NA Rattus norvegicus 81 Iqcf3 ENSRNOG00000022445 ENSRNOT00000039696 3 1 2 127 8 115255798 115255816 GGTGGAAGGAGACAAAGAG 58 115252085 115252659 TTAAAGGAAGGAGCTTTGGT 57 NA Rattus norvegicus 81 Clasp1 ENSRNOG00000002376 ENSRNOT00000061513,ENSRNOT00000084506 1 2 5 80 13 34502020 34502040 AGAGAAGAGAAGCAAGATCCC 59 34502079 34515338 CCAAACCGATCTAATCCAATCC 59 NA Rattus norvegicus 81 Clasp1 ENSRNOG00000002376 ENSRNOT00000086641 3 1 5 81 13 34489088 34489106 TCCTCATCCTCAGGTTCCA 60 34489150 34491431 TGGCAGTACCGTCTAATGAC 60 NA Rattus norvegicus 81 Slc10a6 ENSRNOG00000002057 ENSRNOT00000002819,ENSRNOT00000088508 3 2 2 81 14 7628486 7628505 CTCTGCCTCTACGTCTACAC 59 7628546 7629169 CAAGGGTAATTCCTATGCTCTG 59 NA Rattus norvegicus 81 Slc10a6 ENSRNOG00000002057 ENSRNOT00000002819,ENSRNOT00000088508 2 2 2 80 14 7628486 7628505 CTCTGCCTCTACGTCTACAC 59 7628545 7671882 AAGGGTAATTCCTATGCTCTGG 60 NA Rattus norvegicus 81 Arhgap6 ENSRNOG00000003956 ENSRNOT00000036502 1 1 2 91 X 26357789 26357943 GTAAGACAAGAGATGAAACACC 57 26357715 26357733 GCACAGAATGAACATGTCC 57 NA Rattus norvegicus 81 Arhgap6 ENSRNOG00000003956 ENSRNOT00000051655 3 1 2 80 X 26354255 26357949 AAGCGAGTAAGACAATTGCG 59 26354194 26354213 CACATCATGAACACTGTGCT 59 NA Rattus norvegicus 81 Dcakd ENSRNOG00000021682 ENSRNOT00000080077,ENSRNOT00000031498 3 2 2 84 10 91101007 91101025 TTAACTCCATCACCCACCC 59 91098702 91100959 ATCACGTATCGGTACCCTC 58 NA Rattus norvegicus 81 Slc25a38 ENSRNOG00000018552 ENSRNOT00000025142 1 1 2 161 8 128790556 128794277 CGCTCATGTTACATCCAGTG 59 128795218 128795236 AGAACACAGACAGCATCCC 60 NA Rattus norvegicus 81 Svep1 ENSRNOG00000033110 ENSRNOT00000085698 3 1 2 81 5 75211366 75211384 GCAGAAGAAAGCATAGTGC 57 75210177 75211322 ATTCGTGAAAGACCTGACTG 58 NA Rattus norvegicus 81 Bves ENSRNOG00000043199 ENSRNOT00000076504,ENSRNOT00000066167 3 2 2 80 20 50447314 50448806 TCCTAAAGGGAAGAATGAAGGTC 60 50448842 50448864 CAGGAGAATCTATAAAGGCACAC 59 NA Rattus norvegicus 81 Ssx2ip ENSRNOG00000015425 ENSRNOT00000084034,ENSRNOT00000041186 2 2 2 80 2 252275978 252280096 ACGCCAAACTTAAGGAACAG 59 252280139 252280157 TGCACTGTAGCTGTCTGTC 60 NA Rattus norvegicus 81 Efhb ENSRNOG00000012618 ENSRNOT00000016911,ENSRNOT00000066582 2 2 2 80 9 56111 56129 ATGGCAGAGCAAATGATCC 58 56170 57790 ATGAGCTCATCGTTACTAAACC 58 NA Rattus norvegicus 81 Efhb ENSRNOG00000012618 ENSRNOT00000016911 1 1 2 83 9 118428 118959 GCTGTTCCTTCTATATGTTACCC 59 119002 119020 ACTGACTCGACGAATACGG 59 NA Rattus norvegicus 81 Gorasp1 ENSRNOG00000018047 ENSRNOT00000024408,ENSRNOT00000084950 3 2 2 88 8 128616389 128616855 CTCAAGGCTGAACAAGGAG 58 128616319 128616337 TCATGTTGAACACCTCCAG 57 NA Rattus norvegicus 81 Tdrd7 ENSRNOG00000055779 ENSRNOT00000085738,ENSRNOT00000090186,ENSRNOT00000089938 1 3 3 80 5 61604367 61604387 TAATTCCTACCGAGGCTTCAC 60 61604426 61606802 TGCCTACATACCTGATAACCAC 60 NA Rattus norvegicus 81 Skp1 ENSRNOG00000005828 ENSRNOT00000007676,ENSRNOT00000085463 1 2 2 107 10 37595145 37599644 GATGCCTACGATAAAGTTGC 57 37599714 37605553 ATTCCCAAATCTTCCAGCA 57 NA Rattus norvegicus 81 Ercc8 ENSRNOG00000009968 ENSRNOT00000077938 2 1 2 128 2 39455746 39455765 ACAATGGGAAAGTTAACGGC 59 39455856 39460696 ATACATGGCAATGGTGCAG 59 NA Rattus norvegicus 81 Ercc8 ENSRNOG00000009968 ENSRNOT00000077938 3 1 2 130 2 39455744 39455764 TCACAATGGGAAAGTTAACGG 59 39455856 39460696 ATACATGGCAATGGTGCAG 59 NA Rattus norvegicus 81 Clcn3 ENSRNOG00000010682 ENSRNOT00000083579 3 1 2 97 16 32512843 32512862 TTTACAGTGACAGACCACAC 58 32512920 32516233 AAGACAATCCCATTGTGAGTG 59 NA Rattus norvegicus 81 Gulp1 ENSRNOG00000003242 ENSRNOT00000004463,ENSRNOT00000065212,ENSRNOT00000085908 2 3 3 80 9 51469350 51469368 CTTGGCAGTACTGAAGTGG 58 51469412 51479677 GTGTCTTGCAAACTTCAGC 58 NA Rattus norvegicus 81 Fgfr3 ENSRNOG00000016818 ENSRNOT00000023144 1 1 2 80 14 82277221 82278995 ACTGTACTCAAGACTGCAGG 60 82277160 82277180 ATCCTCAAAGGTGACATTGTG 59 NA Rattus norvegicus 81 Cers3 ENSRNOG00000013823 ENSRNOT00000049340,ENSRNOT00000082458 2 2 2 85 1 127715292 127721450 CCGTCACATAATGAAGTTTACG 58 127721495 127721514 TTCTGGCGAATTCTAAACCA 58 NA Rattus norvegicus 81 Ubr4 ENSRNOG00000018183 ENSRNOT00000082138 1 1 2 89 5 157899480 157899498 TCCTAACCTGAACCAGAGC 59 157899550 157900278 GTTTCAGAACTCTCCAGGAC 58 NA Rattus norvegicus 81 Rtn4rl1 ENSRNOG00000003121 ENSRNOT00000089856 1 1 2 70 10 62053945 62053963 GCATTTCTGGAGGACACAG 59 62106143 62106161 CTCAGAGGTAGCTCTCCAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Enpp2 ENSRNOG00000004089 ENSRNOT00000051139 2 1 2 80 7 94491066 94500825 GGATCAACAGAAGCTGAAACC 60 94491006 94491027 AGGTTCAACACTTCCATTAAGG 59 NA Rattus norvegicus 81 Chrna5 ENSRNOG00000013610 ENSRNOT00000065771,ENSRNOT00000088304 1 2 2 80 8 59582909 59584576 CTGGTTGAAGCAGGAATGG 59 59584614 59584638 GGAACACGTATAATCTTTATCCCAC 60 NA Rattus norvegicus 81 Wdr75 ENSRNOG00000003825 ENSRNOT00000050275 2 1 2 88 9 52698707 52698725 GTTCACATGTGTAGCCTGC 59 52698775 52705928 ACTGTTATCTTGACCAGAGGC 60 NA Rattus norvegicus 81 Otud3 ENSRNOG00000017037 ENSRNOT00000023143 3 1 2 89 5 157347612 157347630 CAGAGTGGAGACCAGTGAG 59 157346795 157347559 TGCTTGTTTGTGACCTTCG 59 NA Rattus norvegicus 81 Mycbpap ENSRNOG00000042912 ENSRNOT00000086261,ENSRNOT00000075795,ENSRNOT00000066132 2 3 3 80 10 82245418 82245439 CTGTCAGCAATGTCTTACAAGG 60 82244763 82245378 GAGGAATGTGTTGCTTCGTC 60 NA Rattus norvegicus 81 Acp5 ENSRNOG00000046261 ENSRNOT00000092200 2 1 2 99 8 23146189 23146605 TTCCTCCAGCATGGATACG 59 23146108 23146126 GAATCTCAGGGTGGAAGCT 59 NA Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000011226 1 1 4 80 8 39191085 39191104 AGAATTTCACGCAGAACCAG 59 39190003 39191042 TCCCAAGGCAATTCTCCAG 60 NA Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000011226 3 1 4 80 8 39191218 39197580 CTCTTGGATGAAAGGGATAATCTC 59 39191161 39191182 TAAGCGCTCACGATTATTATGC 60 NA Rattus norvegicus 81 Slc12a5 ENSRNOG00000018111 ENSRNOT00000065184 2 1 2 93 3 161426095 161438676 GGAAGACGTCAAAGGTGAC 59 161438732 161438751 GTTCCTGCCATCATACTCTC 58 NA Rattus norvegicus 81 Entpd3 ENSRNOG00000018982 ENSRNOT00000025663,ENSRNOT00000082377 3 2 2 81 8 129225855 129226052 CATTTGTGGCATTTGCAGG 59 129226096 129226115 TCATTGAAGGAGGTAAGGGA 58 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000080108 1 1 6 80 5 158121982 158122140 CAGGGTCATAGGTTCACCA 59 158122183 158122202 GTTGTTGATCTCCTCCACAG 58 NA Rattus norvegicus 81 Leng8 ENSRNOG00000018642 ENSRNOT00000077964 1 1 2 91 1 73727919 73727937 CTCAAGGAGGTGCTACAGG 60 73727622 73727864 CAAGCCCAAGATTGTCCAG 59 NA Rattus norvegicus 81 Fkbp15 ENSRNOG00000024663 ENSRNOT00000002083,ENSRNOT00000067076 1 2 2 80 5 78154293 78155316 TGACTAAGGTCGAAGAGTTACAG 60 78154235 78154254 TTGTTTCCATTGTGACCGAC 59 NA Rattus norvegicus 81 Golga4 ENSRNOG00000029910 ENSRNOT00000078625,ENSRNOT00000051290 1 2 3 82 8 127243009 127243031 AACTACTGTCCTAAGATTCCCTG 59 127243073 127248302 TTCGGAGCCATGACATCAG 60 NA Rattus norvegicus 81 Dhx30 ENSRNOG00000029194 ENSRNOT00000084838 3 1 2 83 8 118174107 118182324 CAACATGGCAGCTTCTAGG 59 118174042 118174061 CCAAGAGCTCTTCCAATCAC 59 NA Rattus norvegicus 81 Dhx30 ENSRNOG00000029194 ENSRNOT00000048764 1 1 2 80 8 118174104 118183375 CTCTCGAGCTTCTAGGGAC 59 118174042 118174061 CCAAGAGCTCTTCCAATCAC 59 NA Rattus norvegicus 81 RGD1561520 ENSRNOG00000022407 ENSRNOT00000037130 3 1 1 61 2 52171450 52171468 CTTCCTCCACAAATTGGCG 60 52171285 52171304 ACTTGAGGAAATGCTCTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Myoz2 ENSRNOG00000014815 ENSRNOT00000080215,ENSRNOT00000065361 1 2 2 80 2 227181288 227188186 CTTTAACAGAGTTGCCACTCC 59 227181228 227181246 CGTTCGAAGTCTGGAACCT 60 NA Rattus norvegicus 81 Slc20a2 ENSRNOG00000019490 ENSRNOT00000084330 3 1 2 82 16 74327612 74327630 CTTCCACTTCCTGCAAGTC 59 74322813 74327567 GCTCAATAGTGAAGCCACTC 59 NA Rattus norvegicus 81 Gad1 ENSRNOG00000000007 ENSRNOT00000000008,ENSRNOT00000087712,ENSRNOT00000087134 2 3 4 84 3 56886775 56886879 TCAGAACACAGTCACTATTCC 58 56886922 56886943 CATTGCACTTTATCAGGATCAC 58 NA Rattus norvegicus 81 Pink1 ENSRNOG00000015385 ENSRNOT00000083474 1 1 2 85 5 156681757 156682198 CCTCGTTATGAAGAACTACCC 58 156681692 156681710 AGGTCATCATGGTAGCCAG 59 NA Rattus norvegicus 81 Ambra1 ENSRNOG00000017422 ENSRNOT00000045644,ENSRNOT00000085614 2 2 3 80 3 80718515 80718533 ACCTCCTCTTCTTCCTCAG 58 80718577 80732040 ACCATTGTCCTCAAAGTCC 57 NA Rattus norvegicus 81 Eya2 ENSRNOG00000019203 ENSRNOT00000030119 3 1 2 85 3 162465035 162465654 TCAACTCTCGACCCAACTG 59 162465703 162465721 CAGACCATACAGCAGGACC 60 NA Rattus norvegicus 81 Adprhl1 ENSRNOG00000019504 ENSRNOT00000026392 3 1 4 80 16 81623911 81624348 CAACCATCCTACAGGTTTCCT 60 81624390 81624408 TGTACCAGGGACTTTCCCT 60 NA Rattus norvegicus 81 Ghrh ENSRNOG00000007782 ENSRNOT00000082145,ENSRNOT00000010443 3 2 3 84 3 153451936 153451955 ACAAAGATCCAGGTTCAACC 58 153449252 153451889 GAATCCCTGCAAGATGCTC 59 NA Rattus norvegicus 81 Defa6 ENSRNOG00000029522 ENSRNOT00000050112 3 1 1 102 16 75400904 75400923 GTGTCTGTCTCCTTTGAAGG 58 75401575 75401593 CTTTAGGTCCGCAGTTTGC 60 NA DesignNoJunction Rattus norvegicus 81 Spo11 ENSRNOG00000006732 ENSRNOT00000081823 2 1 2 81 3 170994207 170996203 GTGTGCCCTCTAGTTCTGAG 60 170996246 170996265 GCTTCATTTCTTGCCAAGCT 60 NA Rattus norvegicus 81 Scrn3 ENSRNOG00000018657 ENSRNOT00000025255,ENSRNOT00000081881 2 2 2 80 3 60029779 60029797 GACAGGAATGAAGCCTGGA 59 60029836 60032578 GGAAATATTACGAACTCCTTGGAC 60 NA Rattus norvegicus 81 Dhx35 ENSRNOG00000015928 ENSRNOT00000084866 3 1 2 80 3 155346945 155346963 TATCCGTGATGACCACGAG 59 155347007 155349071 TTGTAGATAACCCAGCGGG 59 NA Rattus norvegicus 81 Tfdp1 ENSRNOG00000019222 ENSRNOT00000087192,ENSRNOT00000026150 1 2 2 95 16 81120674 81121764 TCATCCTGCAGCAAATTGC 60 81121823 81121841 GGATGACAGAGTTGGGAGG 60 NA Rattus norvegicus 81 Slc38a11 ENSRNOG00000004966 ENSRNOT00000058962 3 1 3 80 3 51382077 51382095 GCGGCTATTGTTACTGCAG 59 51372172 51382033 GAGCACACCATTGAGTTCC 59 NA Rattus norvegicus 81 Nkain4 ENSRNOG00000031834 ENSRNOT00000079283,ENSRNOT00000048807 3 2 2 82 3 176445752 176445770 GGTGGATTTGACCCATTCC 59 176444802 176445707 TATGCAGGCAAATATGCCTG 59 NA Rattus norvegicus 81 Pacsin3 ENSRNOG00000014204 ENSRNOT00000057176,ENSRNOT00000080266 3 2 2 80 3 80076616 80076635 GAATTGAGAAGGCCTATGCC 59 80076678 80077298 CATATTGTGGGCCCTTCTC 58 NA Rattus norvegicus 81 SNORND104 ENSRNOG00000051842 ENSRNOT00000077717 2 1 1 60 5 153909202 153909221 TTGACTTCCTATGCAGAGCA 59 153909161 153909179 CAGACTCCGATTTGCATCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC139445.1 ENSRNOG00000059641 ENSRNOT00000091530 2 1 1 60 X 105651452 105651471 TTGGAAGAGACAACAGATGG 58 105651493 105651512 CATTCTTGGAGTAGAGGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007924.2 ENSRNOG00000061331 ENSRNOT00000085814 2 1 1 60 2 35229204 35229222 CACGATCATCCTGATCCTG 58 35229162 35229181 GCTGAGGAAGAAGTACATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000060204 ENSRNOT00000082559 3 1 1 73 8 16713658 16713676 ATGCCAGAGTAACGGAGAG 59 16713712 16713731 TATAGGAGAGCTGAGTGGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059354 ENSRNOT00000080674 1 1 1 60 2 170631829 170631847 GCCCTCTTCCTCTTCACTG 60 170631787 170631808 TTCCAAGAATGTTATCCTCGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060836 ENSRNOT00000091638 3 1 1 67 2 198597575 198597593 TTATCCATTGCACTCCGGA 59 198597526 198597544 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA55 ENSRNOG00000058533 ENSRNOT00000083798 2 1 1 60 5 140989107 140989126 CACTCAAATCTTTCCCAGGC 59 140989149 140989167 CTATAGCACTGCCTGTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056936 ENSRNOT00000082328 3 1 1 60 2 221706030 221706049 GCTCTCAAGATTAGCACCCT 60 221705989 221706007 GTTGGCCTTGAACTCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC106292.1 ENSRNOG00000052599 ENSRNOT00000071951 1 1 1 60 11 65644860 65644878 GCCTTGAACTCAGAGATCC 58 65644818 65644836 CCACATGCCTTTAATCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057260 ENSRNOT00000088640 2 1 1 60 8 122644844 122644862 GAGATTAGCATGGCTCCTG 58 122644802 122644820 ATGGATACTGCCTTCCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058231 ENSRNOT00000079482 3 1 1 60 8 57323397 57323418 AATGGTACAGAGAAGGTTAGCA 59 57323438 57323457 TGCTTTAGGGATCTGTATGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD22 ENSRNOG00000060760 ENSRNOT00000081657 2 1 1 92 11 7583039 7583057 TCCTGTCCTAGCTCCAGAG 60 7582965 7582986 CCATTAGACAGTTCCTTCTGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD22 ENSRNOG00000060760 ENSRNOT00000081657 3 1 1 93 11 7583039 7583057 TCCTGTCCTAGCTCCAGAG 60 7582964 7582985 TCCATTAGACAGTTCCTTCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000048748 ENSRNOT00000074754 1 1 1 75 11 5746944 5746962 CTTACTGTGTTACGCCCTG 58 5746887 5746905 TTTCAATTCAGACGCAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053678 ENSRNOT00000084041 3 1 1 60 5 47735907 47735930 CAGTCAAGAGTTTATGAGTAGCTG 59 47735948 47735967 TCCTTGGAGCTTCTTTGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056286 ENSRNOT00000079873 2 1 1 60 11 27171111 27171134 GATATGACTACATCCAGTGTTCTG 59 27171074 27171098 GTTAGGCTACTAATCAATCGTTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000060852 ENSRNOT00000091123 1 1 1 60 11 70879931 70879949 TTTGGAACAGACTCCTGGT 59 70879973 70879991 AATCTGGGCAGCTTAGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051997 ENSRNOT00000087319 2 1 1 60 8 131897370 131897392 CATTACAGAGAAGATTAGCACGG 59 131897332 131897350 AACGCTTCACGAATTTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000051984 ENSRNOT00000088567 2 1 1 86 16 35199257 35199275 TTGACAAGGACGGAAGAGG 59 35199325 35199343 CAAACAGTGGTGAGATGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061435 ENSRNOT00000085580 3 1 1 60 2 176276199 176276220 GGACTATCTTCCCAGAATACAG 58 176276160 176276178 ACGCAGCAACTCATATACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000055692 ENSRNOT00000086018 1 1 1 67 16 56611597 56611618 GTCAATGAGGTTTATTCAAGGC 58 56611645 56611664 AGGGACATCGACATAAAGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000056506 ENSRNOT00000090136 3 1 1 84 8 55410605 55410624 ATCCAAGGCACGATTATTGC 59 55410540 55410563 CAGCTCTGAAGTGTACATATTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000159.1 ENSRNOG00000051899 ENSRNOT00000085174 1 1 1 60 1 1726463 1726482 CCTAGTGCCATCCTGATGAG 60 1726422 1726440 ATCTGACACTTGTAGGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053584 ENSRNOT00000078908 3 1 1 60 X 103014387 103014407 ATGTACATCAGTAGGTGGCAG 60 103014429 103014447 TTCAAAGGGTCACCTAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061823 ENSRNOT00000082503 1 1 1 60 16 18197746 18197764 GTGTGCTCGATTGAAGAGG 59 18197788 18197806 CTGCCTTACTGAAGACCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000049473 ENSRNOT00000073795 2 1 1 60 2 230213364 230213384 GATCTTAGAAGCTAAGCAGGG 58 230213406 230213424 GTAACCTCAGTTCTCCCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051475 ENSRNOT00000085518 2 1 1 60 16 76412457 76412478 TGTCTCAAGTGCATTAGTAGGT 59 76412494 76412517 GATGTTCAGAGGTCAAACATAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058164 ENSRNOT00000082335 1 1 1 60 1 118962537 118962555 ACACATGTGTCAGTAGGTG 57 118962576 118962597 TGTCAGAATACTGATCAGAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000052366 ENSRNOT00000080936 3 1 1 60 16 9834301 9834322 TTAAAGCATTACTACCTCTGCC 58 9834262 9834281 TTTGAAGCCAAGCATCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000061334 ENSRNOT00000079395 2 1 1 60 6 133828794 133828814 GACCAATGATGAGATCTGGTG 59 133828835 133828854 TATCTGTTCACAAGGCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA79 ENSRNOG00000057500 ENSRNOT00000078315 1 1 1 107 6 115337029 115337047 TATAGGCATGGCACTAGGA 57 115336940 115336961 CCGCAAATTTCAGAGAATACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045293 ENSRNOT00000070560 1 1 1 60 6 114013209 114013230 GACCATCAAATCTGATCTTGTC 57 114013170 114013188 GTGTTAACCATGCCTGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012592.1 ENSRNOG00000037223 ENSRNOT00000056241 1 1 1 103 2 198682671 198682691 TTTCATGCCTCTTAGCCAG 58 198682585 198682604 CATCCTGAAGTATCCTTGGG 58 Novel Rattus norvegicus 81 AABR07068066.1 ENSRNOG00000049222 ENSRNOT00000071274 3 1 1 61 9 80685790 80685809 AAATGCCTTCATGAGATCCA 57 80685833 80685851 CTCTTCCACCCTTGATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000061586 ENSRNOT00000077572 3 1 1 60 X 156720336 156720354 CTCCTGTTTCCCTTTCCCA 59 156720378 156720396 TCTTCCTCGTTAAGGACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000058942 ENSRNOT00000091839 1 1 1 60 X 33175814 33175836 GGTGGTGTTCTTATATCAGTCAG 59 33175854 33175874 AAGCTAGGATGAACAAAGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD33 ENSRNOG00000053764 ENSRNOT00000087746 3 1 1 60 1 101121714 101121733 CAGCTTGTGATGAGGATGTC 59 101121673 101121693 TAGAGTCGTCTCATAGTCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056971 ENSRNOT00000078432 2 1 1 60 2 108115717 108115736 GAGTTGGAATAGGAGCTTGC 59 108115676 108115694 GGAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061829 ENSRNOT00000083749 1 1 1 60 6 95871776 95871796 TCAAGGGTATACGAGTAGCTG 59 95871736 95871756 CATTCTTGAGAGCTTGTTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA31 ENSRNOG00000056042 ENSRNOT00000080428 1 1 1 60 X 85123281 85123301 GTTCTTCTGGTTTGCATTAGG 58 85123323 85123341 AAAGGCAATCAGGAAGCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056159 ENSRNOT00000088019 3 1 1 62 X 119402174 119402192 GACTGCTGTATCCCATGTG 58 119402130 119402148 CTGAGCATAGACACAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056416 ENSRNOT00000081745 1 1 1 60 2 116480676 116480694 TGTGTTGTAGGTGGCAGAG 60 116480718 116480736 TCCACAGGTCAGAACACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031674.2 ENSRNOG00000046154 ENSRNOT00000072209 1 1 1 66 18 25364163 25364186 AAGGGAAATCCTTTCAAGGAG 58 25364117 25364137 TGGTGCATCAGAAGATAAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000044954 ENSRNOT00000070221 2 1 1 60 X 21674868 21674886 CCATGCTATCTTGAACCCA 57 21674910 21674928 AGAACCAACACTGCTTAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045182 ENSRNOT00000070449 1 1 1 60 X 80217873 80217894 ACACTATCTCATGTGATCTCCA 59 80217834 80217857 CCTATCCAAGTACTAATCAGATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044504 ENSRNOT00000069771 1 1 1 60 2 63047412 63047433 GAACTCACCTGATCTTAGAAGC 59 63047452 63047472 TTCTCCCATCCATGTATTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034183.1 ENSRNOG00000054643 ENSRNOT00000077854 2 1 1 80 11 56178781 56178804 GAGATTTCACCTCACATGCG 59 56178720 56178739 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 AABR07027810.3 ENSRNOG00000053408 ENSRNOT00000080615 2 1 1 64 17 44674571 44674590 TGGACTAGAAATCCATTGGG 57 44674526 44674544 CAGATCAGTTCGTAGTCGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056424 ENSRNOT00000081890 1 1 1 60 9 51519342 51519363 ATACAGAGAAGATTAGCATGGC 58 51519303 51519322 GGAACGCTTCAAGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000159.3 ENSRNOG00000055508 ENSRNOT00000082003 1 1 1 61 1 1886090 1886108 TCCGTGCATTTGAGATGAG 58 1886132 1886152 GAGGCTTCGTAAAGAATTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07010460.1 ENSRNOG00000061443 ENSRNOT00000087798 2 1 1 81 2 136828542 136828562 ATGATCCCGGTATCTCAGG 58 136828607 136828625 AACGTTTCTTTCCCTCCAG 58 Novel Rattus norvegicus 81 Pi15 ENSRNOG00000017686 ENSRNOT00000023899 1 1 1 80 5 795579 796519 ACTGGAAGATATCGCTCTATTCTC 60 795522 795540 CTGAGGGTAAGGAAAGGCA 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061287 ENSRNOT00000080889 3 1 1 60 15 88787236 88787255 GACTGATGTGTCACATGAGC 59 88787195 88787215 TGAGCATAGACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004924.1 ENSRNOG00000050663 ENSRNOT00000075021 2 1 1 80 1 168073016 168073036 TCGTGTCAACAGTCTCTATGG 60 168073073 168073098 AACACATAGGAGAAGAGGATAAGG 60 Novel Rattus norvegicus 81 SNORA84 ENSRNOG00000055787 ENSRNOT00000090555 1 1 1 60 15 28166444 28166462 CCAGTGGATACAATGGGCT 60 28166486 28166504 CGAGAAGAAACAGCTCCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055153 ENSRNOT00000081568 1 1 1 60 X 125070520 125070539 GGACAGAGGCTATGTCTTCC 60 125070558 125070580 GGTTACTAATCATTCAGGTGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035975 ENSRNOT00000054098 1 1 1 60 16 39300287 39300305 GAATGTGCCTGATCTCGTC 58 39300328 39300347 CAAGTACTAAACAGGCCCGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056103 ENSRNOT00000085337 1 1 1 60 X 33746769 33746789 CATTTGTAGGAGAACAGAGGG 58 33746729 33746749 GTCACATCTGGTAATGTCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054722 ENSRNOT00000085308 2 1 1 67 6 75590252 75590270 CTTATCCATTGCACTCCGG 58 75590301 75590319 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060763 ENSRNOT00000086697 1 1 1 60 X 29292501 29292521 TCCCTAGAGGCATTGTAAGTG 59 29292543 29292561 CTTTCTGCCACCTATGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044385 ENSRNOT00000069652 3 1 1 60 6 29932878 29932896 ACAACTAAGCAGGGTCAGG 59 29932917 29932938 CCATCTGTTTGATGTGGATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Gsto2 ENSRNOG00000049964 ENSRNOT00000064023 2 1 1 80 1 271231990 271233238 AGCTATTCTGTAAGGTCCCA 58 271233281 271233299 CCTTCAGATCCGTACAGTC 57 Novel Rattus norvegicus 81 AABR07009786.2 ENSRNOG00000041563 ENSRNOT00000063316 1 1 1 83 2 112270937 112270958 CACGAATACTTTCTGGTATGGA 58 112270875 112270893 GCATTTCAGACAAACCGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055207 ENSRNOT00000085379 2 1 1 60 X 139701067 139701089 GGAACGATACAGAGAAGATTAGC 59 139701109 139701127 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000054106 ENSRNOT00000078342 1 1 1 60 X 145875893 145875913 GATGAAGAACATGGCTAGCTG 59 145875853 145875872 GTCCATGATCAATGTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054044 ENSRNOT00000087042 3 1 1 60 2 29930747 29930769 AGAGGAAGATGCTATGTCTAAGC 60 29930709 29930730 TTAGGCTACATTCAGATGTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA8 ENSRNOG00000059339 ENSRNOT00000089038 2 1 1 69 8 13869833 13869852 CAGTTCTTTCCTGTTGGGTG 59 13869884 13869902 AAGAAACCAACGATGCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD105 ENSRNOG00000060532 ENSRNOT00000077761 3 1 1 60 8 21906942 21906961 TCCTGTCTCATGATGATCCC 59 21906983 21907002 CGTTTACTTTGAAGCCTGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA29 ENSRNOG00000060616 ENSRNOT00000082649 1 1 1 60 10 40824909 40824930 CCCATTTGACTACCACATTTCC 60 40824949 40824969 CTATCCCATAAGCATAGCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057422 ENSRNOT00000086088 3 1 1 60 9 86318222 86318241 GAACCTCCAAACAAACATGC 58 86318181 86318199 CTACCAGACACTGAAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD70 ENSRNOG00000051367 ENSRNOT00000085368 2 1 1 60 9 66501665 66501685 GTCAATGATGCATCTTACTGG 57 66501707 66501725 AGTGGTAGTGACGAATGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000060300 ENSRNOT00000081720 2 1 1 60 4 166666774 166666794 CTTAGTGGTAGATCACTTGGC 58 166666734 166666754 TTAATTCTCACAGCTAGCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ACEA_U3 ENSRNOG00000054069 ENSRNOT00000079601 1 1 1 60 10 57319451 57319473 GTTACTAGAGAAGTTGCTCTGAC 59 57319413 57319433 ACTATGTCTCATCCTCATGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA3 ENSRNOG00000056450 ENSRNOT00000091995 2 1 1 60 3 46824619 46824637 ATCACATCCTGATAACGGC 57 46824577 46824595 GACCAGCAGATCCTTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041970 ENSRNOT00000063723 1 1 1 60 1 270635200 270635218 ATGCACCCAATCTTGTCTG 58 270635240 270635260 TTTAAGTACTAACCAGGCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC111831.2 ENSRNOG00000060905 ENSRNOT00000092218 2 1 1 89 6 8346765 8346783 CCATGATTGACAGTGCCAG 59 8346836 8353505 TCTGCTTCAGAACCTGTCG 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000055500 ENSRNOT00000078566 2 1 1 60 2 178614276 178614297 AATACAGAGAATGTTAGGCTGG 58 178614317 178614336 AAACGCTCGAAGAATTTGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062920.1 ENSRNOG00000052333 ENSRNOT00000087813 1 1 1 60 6 15190516 15190534 GCAGAAGATGGAGAAGCTG 58 15190558 15190576 CTTCCTCGAGCTCATCCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056460 ENSRNOT00000090901 2 1 1 60 2 63845639 63845660 GAGAAGATTAACATGGCTCCTG 59 63845680 63845699 GATATGGAATGCTTCACGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Haus2 ENSRNOG00000048933 ENSRNOT00000076309 1 1 1 60 3 112371783 112371801 TTACTGCTGAACCACTTGG 58 112371822 112376249 ATCTGAGATCTGCTGTAATCTC 57 Novel DesignRelaxed Rattus norvegicus 81 AABR07070816.1 ENSRNOG00000054182 ENSRNOT00000086145 3 1 2 93 8 85605735 85605754 CCTGCACATTTACGGATTGG 60 85605809 85620059 GGCTCGATTTCGTTTGATCC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA48 ENSRNOG00000055857 ENSRNOT00000077191 1 1 1 62 2 118692316 118692334 AAGAGTCACCTTGGTGGTG 60 118692272 118692290 AAGACAGCCATCTGCTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000053964 ENSRNOT00000088785 1 1 1 60 6 133794202 133794221 AAACCAAACATCTGGGAGTC 58 133794243 133794262 CTCAGACTCCCAATGTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061281 ENSRNOT00000077108 3 1 1 66 6 4557249 4557267 AATGAGGTTTCTCCGAGGC 60 4557295 4557315 GCATTCTTCTGAAATGGAAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016966.1 ENSRNOG00000051721 ENSRNOT00000087303 3 1 1 60 15 5619901 5619919 TCACTGTGATCTTGATGGC 58 5619942 5619961 GGAGGCCTCAGTAGAAAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034980.2 ENSRNOG00000057986 ENSRNOT00000073132 3 1 1 95 12 2643870 2643890 AACCTAAAGAAAGAGATGCCC 58 2643791 2643816 TTTGACTATTATGTGGGAGGAG 57 Novel Rattus norvegicus 81 SNORD113 ENSRNOG00000057088 ENSRNOT00000079443 2 1 1 60 6 133825649 133825669 GACCAATGATGAGATCTGGTG 59 133825690 133825709 TATCTGTTCACAAGGCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039541.1 ENSRNOG00000002321 ENSRNOT00000003156 3 1 1 60 X 79489589 79489607 AATGGTGGTGAGCATAGGA 58 79489629 79489649 GGTTTCCATGGACTTCTTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001035.1 ENSRNOG00000057721 ENSRNOT00000087018 2 1 1 60 1 35027347 35027366 TCCCTGTTGGCATTCTAGTG 60 35027305 35027323 CTCTGACACAACACATGCA 58 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000044660 ENSRNOT00000069927 1 1 1 60 6 116965727 116965748 CACTTTAAACATGCCTGATCTC 58 116965688 116965706 CCATCTAAGTACCCAGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053500.2 ENSRNOG00000060434 ENSRNOT00000079959 3 1 1 99 3 110508427 110572543 GGACACTGTTCTCTGGGAC 60 110572606 110572624 GTCCTGGAGGGTGATTTCC 60 Novel Rattus norvegicus 81 Cfap61 ENSRNOG00000011028 ENSRNOT00000075899,ENSRNOT00000014713 1 2 4 80 3 140323355 140323373 TCAACGACGAGGAAGACTG 60 140323415 140341059 AGACAATGACCTTCCCTTCTG 60 Novel Rattus norvegicus 81 Cfap61 ENSRNOG00000011028 ENSRNOT00000075899,ENSRNOT00000014713 2 2 4 80 3 140310627 140310646 TTCAACTCATGGACTCCCAG 60 140310689 140316289 TCATTAAAGCAGTGGTCGC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000051527 ENSRNOT00000091483 2 1 1 60 4 130896937 130896960 GGAACAATACAGAGGAAGATTAGC 59 130896900 130896921 TTCACGAATTTGCGTATCATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056206 ENSRNOT00000079530 3 1 1 77 4 87048938 87048957 AATTGCACCCACTTCAACAC 60 87048880 87048899 TGCATGTCTTCTTTGCAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060522.1 ENSRNOG00000036459 ENSRNOT00000054569 2 1 1 60 4 77479084 77479102 GATGTGGTCAGCTTCAAGG 59 77479042 77479062 AGTCAACAATTCCTAGGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054741 ENSRNOT00000089782 2 1 1 60 4 102139412 102139431 TGTGTTAGTAGGTGGCAGAG 59 102139371 102139392 GTTCATAGGACAAACCATTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053568 ENSRNOT00000089129 1 1 1 60 4 120350159 120350177 CCCTTTCCTCCAGGATGTC 60 120350199 120350219 ATCCTTGACCAAAGAACACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067583.1 ENSRNOG00000055728 ENSRNOT00000085193 3 1 1 60 9 52937878 52937897 TTTGATTTGCTTCAGTGCGT 59 52937918 52937938 GATCATCTCAATCGCCAACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029573.1 ENSRNOG00000049032 ENSRNOT00000073020 2 1 1 109 10 35146956 35146976 TATGAGCTGTGGCTTCCTC 59 35146863 35146881 GCAATGACACCAAGAAGCA 59 Novel Rattus norvegicus 81 AABR07018155.1 ENSRNOG00000038619 ENSRNOT00000058944 3 1 1 60 15 43543654 43543673 AAAGCCCAGTTTAACACCC 58 43543696 43543715 ACAAAGGAGTCAGTCTTAGC 57 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000056456 ENSRNOT00000085749 1 1 1 66 12 692835 692855 TGAAGTTGGAAGGATACAGAG 57 692883 692901 CTTCAGGAATTTGGGTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032045.1 ENSRNOG00000061132 ENSRNOT00000083407 2 1 1 81 18 44058041 44141685 GCCAACCCTGAAGATACAG 58 44057978 44057997 TTTCTCTGCAGAATTCTCGA 57 Novel Rattus norvegicus 81 SNORA62 ENSRNOG00000059571 ENSRNOT00000078656 1 1 1 60 4 171047878 171047898 TGCACACTATTAAAGCTCAGG 59 171047838 171047857 TCTGACATGCAGAAGTTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072711.1 ENSRNOG00000051964 ENSRNOT00000080235 2 1 1 80 2 235092802 235092823 AAGCTGTCTGTGATTGAAATGG 60 235088357 235092762 GAATGGGTGACCTACATCGT 60 Novel Rattus norvegicus 81 AABR07013147.1 ENSRNOG00000053852 ENSRNOT00000077434 1 1 1 61 2 224712888 224712906 GATGTTGCTTCTGTCTCCT 57 224712930 224712949 GAAGACTGATGTTCATGGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072558.1 ENSRNOG00000052378 ENSRNOT00000079561 1 1 1 86 17 45070827 45070845 TTCTCAACCTGTGGATCCC 59 45070893 45070915 AGTGGAATGGTTAGGACTCAC 60 Novel Rattus norvegicus 81 AABR07072558.1 ENSRNOG00000052378 ENSRNOT00000079561 2 1 1 87 17 45070826 45070845 ATTCTCAACCTGTGGATCCC 60 45070893 45070915 AGTGGAATGGTTAGGACTCAC 60 Novel Rattus norvegicus 81 AABR07064061.1 ENSRNOG00000045967 ENSRNOT00000072431 1 1 1 60 6 62797542 62797562 AAGGTGGTAGAGGACATTGAG 59 62797502 62797521 CATCCTGTTTAAGCCAAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC139873.2 ENSRNOG00000053098 ENSRNOT00000078792 1 1 1 80 3 73743768 73743791 CATCATCTATCTGATCACTGTGG 59 73743710 73743730 TACATGGGTGTTTGTAACCTC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000056514 ENSRNOT00000077534 1 1 1 62 17 9247727 9247746 TGTGTCAGTAGGTGGTAGAG 58 9247684 9247708 CATTCAGATGAATAGGTCAGAACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058514 ENSRNOT00000082646 2 1 1 60 17 60418370 60418388 CTTTCTCCCTCACCACTCC 59 60418328 60418347 GGAAGTAAGTCCTCTTCGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059221 ENSRNOT00000083903 1 1 1 60 2 167059682 167059701 CCTAAAGGGATTGCAAAGGT 58 167059641 167059661 CTCTTCTCTGCTACCTATGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041877 ENSRNOT00000063630 3 1 1 67 X 10380740 10380759 TATCACACTGAACATGCCCA 60 10380789 10380807 GTACTTAGCTAGGCCCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059156 ENSRNOT00000084342 2 1 1 60 17 73492696 73492714 GCTGTCGCACATGTATGTC 59 73492654 73492672 CACTGAGTGGTGACATAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013288.2 ENSRNOG00000048974 ENSRNOT00000071198 1 1 1 60 2 231874977 231874996 CCCTTCCACTTTAACATGGG 59 231875018 231875037 AAACATGGCAGCACTTACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041942 ENSRNOT00000063695 1 1 1 60 X 136888056 136888076 TGCCTGATACTGTCTTAGCTC 59 136888095 136888116 AATACGACATACTTGCAATGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004756.1 ENSRNOG00000058731 ENSRNOT00000080976 1 1 1 60 1 154627185 154627205 ATCAAGTGTAGAAAGCGTGTG 59 154627227 154627245 AGGAAAGCATGGAGTGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051833 ENSRNOT00000080178 2 1 1 60 17 48581627 48581647 ATGTGACAGAGTGGAAAGAGG 60 48581587 48581606 TTCACATGGTCATAGGCCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA62 ENSRNOG00000060358 ENSRNOT00000090349 3 1 1 80 X 11866188 11866206 GGTAGTGTGCTAAACGAGC 59 11866126 11866146 GCAAAGGTTACTATCAAACCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Chd9 ENSRNOG00000049302 ENSRNOT00000075970,ENSRNOT00000078786 2 2 4 89 19 17397468 17399493 ATATAGAGGATGACGTTTCTTCCC 60 17396113 17396132 TAGGCCAGTACACTTTGTCC 60 Novel Rattus norvegicus 81 AABR07027878.1 ENSRNOG00000052387 ENSRNOT00000091880 1 1 1 81 17 48001073 48001091 GTCTTTCCATCTGCACCAC 59 48001007 48001030 CTGAGCTTTGTAAGAGTGGTC 59 Novel Rattus norvegicus 81 AABR07057644.1 ENSRNOG00000055655 ENSRNOT00000084233 3 1 1 67 7 82284581 82284602 GGAGCATCTATGGAAGTAACCA 60 82284535 82284553 ATCAGAGAAGACTGCCTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056202 ENSRNOT00000085687 1 1 1 81 10 83735590 83735608 ACTGTCTACATGCTGGCTC 60 83735653 83735671 AACCTGGTCCCTCATTACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061722 ENSRNOT00000082292 1 1 1 60 4 175979701 175979721 CTTTCTCCCTCACTACTTCAG 58 175979661 175979679 GACCTCATCAACTGAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061871.1 ENSRNOG00000030647 ENSRNOT00000052259 1 1 1 60 4 150199655 150199677 CTCAGATGAATGATGGATCTCAG 59 150199696 150199715 ATTTCTGAATCATCCGACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060364.1 ENSRNOG00000061225 ENSRNOT00000090525 1 1 1 60 4 69970941 69970961 CAAGAAGTTAGACCACAGGGA 60 69970899 69970917 TTTGTTTAGCTCTGAGCCC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000060890 ENSRNOT00000081694 3 1 1 60 14 45812512 45812532 CACATGAGCATTAGTAGGTGG 59 45812472 45812492 GTCAGAACAGCCTCTATAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030901.1 ENSRNOG00000055889 ENSRNOT00000084845 3 1 1 85 10 108391505 108392397 CCCTCAAACGGAAGAACCT 60 108392445 108392464 CACGTATTTCCCATCAACGG 59 Novel Rattus norvegicus 81 AABR07029842.1 ENSRNOG00000050824 ENSRNOT00000070824 2 1 1 60 10 54769672 54769693 ACTCATGTAGATCCAGTTCCAC 60 54769714 54769732 CCCTTACTGAAGAGTGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC499971 ENSRNOG00000011092 ENSRNOT00000014998,ENSRNOT00000077682 2 2 2 80 4 7150806 7150824 GATGTTCAAAGTGCTGCCA 59 7150866 7151220 CGGCTCTTCCAAATACTTGTG 60 Novel Rattus norvegicus 81 AABR07004022.1 ENSRNOG00000045763 ENSRNOT00000071788 2 1 1 60 1 122662199 122662217 CAGCTCTAAGCTGGATCCA 59 122662157 122662177 CTTCTCTATTGAGCAGAGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Dlx6as ENSRNOG00000051264 ENSRNOT00000076282 2 1 2 90 4 32371500 32371518 CTCACTTAGGTCCAAGCTG 58 32336617 32336635 TTTCCCTCTGGTTCTCAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043248.1 ENSRNOG00000053919 ENSRNOT00000071451 3 1 1 81 19 26769572 26771482 AGCTCAACAACGTAATGAAGTC 59 26771521 26771542 AGGCTGAATAGTAAAGGTCTGG 60 Novel Rattus norvegicus 81 AABR07040782.1 ENSRNOG00000011067 ENSRNOT00000014702 1 1 1 99 X 110178221 110178242 TTACCTTCAGAATTACAGGGAG 57 110178142 110178161 GGAACACAGGCTTTGTAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052508.1 ENSRNOG00000061770 ENSRNOT00000088345 1 1 1 82 3 58380175 58380199 CAGATCTCATAGAATGATCACAGTC 59 58380239 58380258 GACCTGGGATTCTGGACAC 60 Novel Rattus norvegicus 81 AABR07004992.1 ENSRNOG00000052236 ENSRNOT00000086302 2 1 1 140 1 173284395 173284413 ACTCTTCCAAGGACATGGG 59 173284527 173284546 TTATCCTGTAGTTGCCCAGC 60 Novel DesignNoJunction Rattus norvegicus 81 U4 ENSRNOG00000051966 ENSRNOT00000088761 2 1 1 73 12 46862484 46862502 AATGAGGTTTATCCGAGGC 57 46862429 46862447 ATTTCAAGTCGTCATGGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061566 ENSRNOT00000086649 2 1 1 60 14 26311811 26311834 CCACTAGAGGATTACACATATGAC 58 26311852 26311871 CTACTCTTTGCCACCTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058528 ENSRNOT00000078480 2 1 1 60 1 115490140 115490163 CTGTGTCACATGAATATCACTAGG 59 115490103 115490124 ATACTGAATGTAGACATAGCCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014301.1 ENSRNOG00000047391 ENSRNOT00000071282 2 1 1 60 14 8065784 8065805 AAAGCTTCTGGATAGAATCCTC 58 8065745 8065763 GAGAGTGCCTGTCTTACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063290.1 ENSRNOG00000048177 ENSRNOT00000071311 2 1 1 113 6 27210113 27210134 GTGGCCTTAATGATGAAGGG 59 27210210 27210228 AGCAGAGATCTATGCACGG 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000054629 ENSRNOT00000077811 1 1 1 60 10 46193743 46193761 CTGACCTCTACGGTTTCCC 60 46193701 46193724 CCTCAACTACTACAAACTATGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC093965.2 ENSRNOG00000056321 ENSRNOT00000089960 3 1 1 80 10 40373860 40373883 CAAGCTTCTTCAAGAGATTTCC 58 40373801 40373819 CTCCCATCCTCCATATGGG 59 Novel Rattus norvegicus 81 Rn60_7_1407.3 ENSRNOG00000053143 ENSRNOT00000087227 3 1 1 80 7 142887900 142887920 GTAGGAACATCGTTTCTTGGC 60 142887961 142890216 GAGTCCTGGGATATCTGCTG 60 Novel Rattus norvegicus 81 AABR07008440.1 ENSRNOG00000055126 ENSRNOT00000083965 1 1 1 60 2 58647445 58647465 GAAATGCCTCTATGAGATCCA 57 58647405 58647429 CCTTCCTCCTTAATCACTAATTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035171 ENSRNOT00000053294 3 1 1 60 10 43188378 43188396 TTGGAAGTTAAGCAGGGTC 57 43188419 43188438 GATATTCCCTGGCAGTTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055733 ENSRNOT00000081390 3 1 1 60 17 88088175 88088193 ACTGGTCTTCAGCCAAGAG 59 88088133 88088153 TATAGACTAGGGAGGTGGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC103129.2 ENSRNOG00000053541 ENSRNOT00000081766 2 1 1 80 7 140137635 140139420 ACTGCCTTACCCATATCTGTC 59 140137575 140137595 TGTTACAGGGTACCTCTTCAG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000054110 ENSRNOT00000090821 3 1 1 60 17 82189672 82189692 GGTTGAAGAAGATGATGTTCC 57 82189711 82189732 TCATAAACCCTTGACCAAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053461 ENSRNOT00000091604 1 1 1 60 12 44052251 44052271 GCGATACAGAAGAGATTAGCA 58 44052292 44052311 AACGCTTCAAGAATTTGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000057704 ENSRNOT00000086024 3 1 1 62 2 227587045 227587069 CTGACAACAGACATATAGTTAAGGC 60 227587007 227587027 AAACCACAGTGGTTAGATGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035114 ENSRNOT00000053237 1 1 1 61 12 24523097 24523115 CTAAGCAGGGTCGGATCTG 60 24523140 24523158 AAGCACCTGGTATTCCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA4 ENSRNOG00000052086 ENSRNOT00000077866 1 1 1 60 3 129328815 129328833 GAGGACCAAGAAGGCTGAG 60 129328773 129328794 TTGTCTAGGAGGAGTGTATCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA84 ENSRNOG00000053824 ENSRNOT00000087965 2 1 1 60 17 15400574 15400592 CCAGTACAGTTCTCCAGTG 57 15400532 15400552 CTCCCATGCATAAATCAAAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054088 ENSRNOT00000088488 1 1 1 60 2 14966584 14966603 AGGGCTCCATATTTGAACAG 58 14966543 14966561 TCAGTGATACATCTGCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC111647.1 ENSRNOG00000039863 ENSRNOT00000061202 1 1 1 60 4 25617038 25617059 CACAGCAGACATAGATCTTCAG 59 25616999 25617019 CTTGAGGTCTATCAGTGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0691.2 ENSRNOG00000051080 ENSRNOT00000076463 2 1 1 60 X 68187632 68187652 ATAGAGGACACATGACTGGAG 59 68187592 68187613 CCATATTTGTAAGGAACATGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000052749 ENSRNOT00000090106 1 1 1 60 2 251829094 251829115 CAGATCGTATAAATCTTTCGCC 58 251829055 251829074 ACTCAGAATTGTTCCTCTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008911.1 ENSRNOG00000056969 ENSRNOT00000087246 2 1 1 61 2 78283229 78283249 TTGATGTGAAATGGCAGTCAC 60 78283135 78283206 TCAACAACAGCACATCCCT 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000059173 ENSRNOT00000083106 2 1 1 61 1 186497711 186497731 AGGCTATGTCTAAACTCAGTG 57 186497670 186497693 GGTGTTAGGCTACTAATCATTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051994 ENSRNOT00000089864 2 1 1 67 1 228262109 228262127 AATGAGGTTTATCCGAGGC 57 228262155 228262176 CCTGATATGGAATTTGCTAGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053871 ENSRNOT00000089811 2 1 1 60 1 261936143 261936161 CATTGAGGTACCACTGCTG 58 261936101 261936121 CGTAGTTATAGCCTGTCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060672 ENSRNOT00000081361 2 1 1 60 14 113503212 113503231 TGCCATGTTACATGTACGTC 58 113503171 113503189 ACTGAGCATAGCCATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058031 ENSRNOT00000081602 2 1 1 60 1 173139677 173139696 TATACGAGTAGCTGCACTCC 59 173139719 173139737 GTTGCCTGCTTCTTGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061190 ENSRNOT00000088325 3 1 1 66 2 202894245 202894264 GTCAGGTGGAAGAAGGAGAG 60 202894198 202894216 ATCATTCGCGTGTTTGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000057591 ENSRNOT00000082778 2 1 1 66 2 165813967 165813985 ATCAGACCTTGCTGCTGAG 60 165814015 165814033 CTACATCACTGTGAGGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911249 ENSRNOG00000056251 ENSRNOT00000080740 3 1 1 128 1 85253257 85253376 CAGACCTGTACAGAGCCTC 59 85253551 85253569 GGTGACATAGGCCTTCAGG 60 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000044605 ENSRNOT00000069872 2 1 1 60 1 161836652 161836672 ACAGCATGATATACCATCCTG 58 161836612 161836631 ACCCTTCTTAGTTCTGAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052895.2 ENSRNOG00000053165 ENSRNOT00000082492 2 1 1 99 3 82374444 82374463 AACCATAGCATTCTGACCTC 57 82374528 82374546 AATCACTGCTGCTAGAGTG 57 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000034513 ENSRNOT00000052636 2 1 1 60 14 59994533 59994553 TACCAGATCTCATTTGACCTC 57 59994573 59994593 CTATGAGAGTACTAACCAGCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028381.1 ENSRNOG00000055638 ENSRNOT00000080328 2 1 1 80 17 67207919 67207938 CTACAAGTGTCCTGTGAAGC 59 67207984 67208002 TACCAACTCCTTCATGCGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07004397.1 ENSRNOG00000030679 ENSRNOT00000048584 3 1 1 60 1 141214506 141214528 CCGGAAGTGGTATTATAATGCAG 60 141214547 141214566 TGTGTCATCTCGCATTAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000054743 ENSRNOT00000079198 2 1 1 60 1 116711091 116711112 GACAACAGAAAGTCAAGAACAG 58 116711052 116711071 CAGCGTAATCCTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000061349 ENSRNOT00000081921 1 1 1 60 2 84566329 84566349 CCTTCTTAACACGAAAGACAG 57 84566368 84566389 GATAGCAGTTAGATGGTGATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070416.3 ENSRNOG00000059963 ENSRNOT00000083564 3 1 1 80 8 69506163 69506189 ATGAGAAGGTCAAACCTTAGGA 59 69506104 69506125 GTTGAAGATATTTACTGGCCCT 58 Novel Rattus norvegicus 81 AABR07056767.1 ENSRNOG00000058819 ENSRNOT00000088769 3 1 1 80 7 40405588 40405611 AGATTTCACCTCACATGCGA 60 40405652 40405672 TTCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 AABR07061860.1 ENSRNOG00000043615 ENSRNOT00000068882 2 1 1 60 4 149826579 149826598 GCCTTGTTGAAGGAAGTGTG 60 149826620 149826639 CTGGCTTGAACATCTGAAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA3 ENSRNOG00000053310 ENSRNOT00000077444 3 1 1 60 4 183450207 183450226 AGTCTTGATTCACTGGTGGG 60 183450248 183450267 ATATGTTTCTGGTCTGGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051379 ENSRNOT00000085090 2 1 1 60 1 24333821 24333843 GGAACGATACAGAGAAGATTAGC 59 24333783 24333801 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128960.2 ENSRNOG00000057958 ENSRNOT00000085104 1 1 1 141 17 78911821 78911839 ATTGTGGGAGTCACACTCC 59 78911944 78911999 AATCCACTGAAGGTCGAGG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000058145 ENSRNOT00000085737 1 1 1 60 1 84797417 84797436 TATACGAGTAGCTGTGCTCC 59 84797376 84797394 GACAAATGGACCCTGAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA15 ENSRNOG00000059209 ENSRNOT00000080079 2 1 1 60 10 104714041 104714060 AAGACTCTGCCGATACACTC 59 104714000 104714018 TTCTCAGTAAGGGCTGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001037.1 ENSRNOG00000047117 ENSRNOT00000073945 2 1 1 80 1 35152080 35152103 GAGATTTCACCTCACATGCG 59 35152019 35152037 TCCTCCTTCTCCACATCCT 59 Novel Rattus norvegicus 81 SNORA2 ENSRNOG00000055831 ENSRNOT00000088005 2 1 1 60 1 110521695 110521714 ATAGCTGTTGGTTTCAAGCA 58 110521734 110521755 GAATAGCCAACAAACTACAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA74 ENSRNOG00000058995 ENSRNOT00000082932 3 1 1 60 2 2478790 2478810 TACCTAGGTTTCCTTGTACCT 58 2478750 2478768 GCTATTGGCTGCTGTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072639.1 ENSRNOG00000054284 ENSRNOT00000084366 1 1 1 66 19 37021308 37021486 TTTCAGCTAGCAATGGCAC 59 37021260 37021281 GAGTCTTTATAAGCCAAATGGG 57 Novel DesignNoJunction Rattus norvegicus 81 SNORD115 ENSRNOG00000051593 ENSRNOT00000085190 2 1 1 80 1 116994490 116994509 GGGTCTATGTCGATGATAGC 58 116994429 116994450 CTCAGCGTAATACTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sry3 ENSRNOG00000054335 ENSRNOT00000088534 1 1 1 60 Y 705581 705602 CACTATCATATACGGACAGGAC 58 705542 705560 TTTCTGGTTCTTGGAGGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056211 ENSRNOT00000089802 1 1 1 60 3 84387618 84387639 ATACACAGAAGATTAGCATGGC 59 84387658 84387678 GGAATACTTCACGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000053637 ENSRNOT00000089785 2 1 1 60 12 12727304 12727324 TAAACCTACCCTGTGTACACC 59 12727344 12727364 CCCATTCACAATACAGACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059557 ENSRNOT00000086555 3 1 1 60 5 68338909 68338929 TAAGTTGCAGAGATGGGAGAG 59 68338869 68338890 ACTGATCACTCAGATCAGATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060873 ENSRNOT00000083377 1 1 1 60 12 37657025 37657045 CAAACAAGCTCTCAAGAAGTC 58 37657064 37657085 TCTAGTCAAGAAGTCATTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057697 ENSRNOT00000080861 1 1 1 62 1 214170108 214170129 GCAGCACATACACTAAATTTGG 59 214170067 214170085 AATCCTTGTGCAAGGACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035267.1 ENSRNOG00000046209 ENSRNOT00000070896 2 1 1 60 12 9001190 9001209 CTGAACTCAGAGATTTGCCT 58 9001231 9001250 GTAGCACACGCCTTTAATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057890 ENSRNOT00000087419 2 1 1 79 1 27723225 27723243 AATGAGGTTTATCCGAGGC 57 27723285 27723304 TGATTATTGTCCAAGGGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060056 ENSRNOT00000085392 3 1 1 60 1 43982706 43982725 ATGGCACAGAGAAGATTAGC 58 43982748 43982766 ACGCTTCACAAATTTGGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059991 ENSRNOT00000078217 1 1 1 60 5 2951276 2951295 GCTCTTAGAAACATTGCAGG 57 2951235 2951254 TTTCTGCTACCAACTGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054464 ENSRNOT00000081664 3 1 1 63 5 52582801 52582820 CAGAGAAATTAGCATGGCCC 59 52582846 52582864 GCAGCTAATGTCCTGTCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000053569 ENSRNOT00000079288 1 1 1 60 10 47586477 47586495 AGAGACTTTGACAGCCCAG 59 47586517 47586537 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000056133 ENSRNOT00000084145 1 1 1 76 12 10655652 10655670 CTGGGAAGGTCTGAGACTG 59 10655594 10655612 TTCTCTGGGAACTCACCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000057115 ENSRNOT00000087409 3 1 1 60 1 88820826 88820844 ACTGAGTGCAGTATCAGCT 58 88820784 88820802 TATTGTCCTCGGACAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055478 ENSRNOT00000086437 1 1 1 60 2 169249233 169249252 ATCAGTCTTTGGTCAAGGGT 59 169249192 169249214 CTTGTTTAGAAGTTCTAGCAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060968 ENSRNOT00000077699 3 1 1 60 2 244824698 244824720 GATACAGAGAAGATTAGCATGGC 59 244824740 244824758 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0849.2 ENSRNOG00000051254 ENSRNOT00000076116 3 1 1 80 13 79913060 79913079 ACTGAATACTTGGATGGACG 57 79913121 79934302 TTTGGTCCAGATGTATCCAG 57 Novel Rattus norvegicus 81 ENSRNOG00000058420 ENSRNOT00000091110 2 1 1 80 1 214748143 214748164 TGTTCACATCCTCATCTACCAG 60 214748203 214748227 CCAAAGGGTATAATTGACCTGAC 59 Novel Rattus norvegicus 81 Txnl4a ENSRNOG00000052004 ENSRNOT00000089487 1 1 1 64 18 76737342 76737360 AGCTCTATGACCCATGCAC 60 76740331 76740351 GCCCAAATCAATCATGATGTG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000055556 ENSRNOT00000085949 2 1 1 64 2 142743360 142743379 TATGTCAGTAGGTGGCAGAG 59 142743404 142743424 GCTCTCCTACTATCATGACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000053665 ENSRNOT00000079107 2 1 1 60 12 39008101 39008119 AGAGAAGGAAACCAAGGGC 60 39008142 39008161 AATCCTGTGGAGAACTCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059397 ENSRNOT00000089397 1 1 1 64 3 20467477 20467497 CAGCACGTGTACTTAAATTGG 58 20467433 20467452 TGTGTCATCCTTGAGTAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128476.2 ENSRNOG00000057782 ENSRNOT00000080865 1 1 1 60 7 121135654 121135674 GTATCAAGTCCTTCCTGTCCT 59 121135695 121135714 CACCTGTCCTTACTTCCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000058966 ENSRNOT00000089090 3 1 1 60 2 211233231 211233249 AGCATCCTCCTTTGGAGTG 59 211233268 211233291 ACTCTATTTCTCTTAGAGCAGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC109096.1 ENSRNOG00000046560 ENSRNOT00000071617 1 1 1 117 1 220836244 220836262 CTGCTTCCTGGACTCAGAG 60 220836145 220836163 TAGCTTCTGCCAACAACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069942.2 ENSRNOG00000056097 ENSRNOT00000079094 1 1 1 60 8 42786943 42786964 CTTCTGTTCCTGAGCATCG 58 42786988 42787006 AGATGAGCAGGATCATGCC 60 Novel DesignNoJunction Rattus norvegicus 81 Rn60_18_0774.1 ENSRNOG00000061786 ENSRNOT00000088260 2 1 1 81 18 78277511 78280863 CAGGGTATGGGCAAATTGG 59 78280907 78280926 CTCTCAGTAAAGGCCTGGAG 60 Novel Rattus norvegicus 81 AABR07011697.1 ENSRNOG00000054429 ENSRNOT00000078007 1 1 1 98 2 166319733 166319753 CATGGAGTCTCAGGGTGTG 60 166319653 166319673 ACCTTCCAGTCGGATAATCTC 59 Novel Rattus norvegicus 81 ENSRNOG00000053557 ENSRNOT00000090085 2 1 1 60 10 72147988 72148008 AAGATGACTATCCGTCCTCAC 59 72148029 72148048 TTTGGATGAAACAGTGGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068285.2 ENSRNOG00000061524 ENSRNOT00000086903 3 1 1 93 9 95786919 95786942 AAGATCAAACTGACCGGCA 60 95786844 95786863 GCTGATAGGACTTCACAACG 59 Novel Rattus norvegicus 81 SNORA2 ENSRNOG00000058669 ENSRNOT00000078457 2 1 1 60 5 6800273 6800292 GTCGTACTGTAGCTGTTGGT 60 6800314 6800333 AACAAACCACAGGAAGACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004947.1 ENSRNOG00000059184 ENSRNOT00000088291 1 1 1 80 1 171485358 171486064 TGTGGAAAGAGGATCATGAG 57 171486108 171486126 TTCTCAACAGCAAAGAGGG 58 Novel Rattus norvegicus 81 Rn60_13_0847.2 ENSRNOG00000051248 ENSRNOT00000076861 2 1 1 82 13 79736654 79737032 CTCTGAATGGCTAATTGTAGCC 59 79737069 79737093 CTGATTCAGTCTAATTGGTGAAGTC 60 Novel Rattus norvegicus 81 U1 ENSRNOG00000057237 ENSRNOT00000089773 1 1 1 60 2 137252557 137252576 TACTGACCCTGAGATTTCCA 58 137252516 137252538 ACCCTACTACCACAAACTATACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053777 ENSRNOT00000080526 3 1 1 63 2 71792443 71792461 CATAGAGGTGTCCCAGGTG 59 71792487 71792506 CATAGCCTACTCTCACTTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC108631.2 ENSRNOG00000055424 ENSRNOT00000082046 1 1 1 60 1 228450852 228450872 GATGTTCAACCATCAAAGCAG 58 228450812 228450830 TTTCGGTGTGACACTCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058479.1 ENSRNOG00000047414 ENSRNOT00000071132 1 1 1 68 7 118911586 118911604 GACAGCAGGAGTCAGTCTG 60 118911640 118911658 ACACTAGTCACAGTCGCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07029192.1 ENSRNOG00000061166 ENSRNOT00000081865 1 1 1 80 10 12284300 12284323 TAAGCTCTGTGTCCTTATTGTG 58 12284241 12284259 AGTTGAGTCATCAGCAGTG 58 Novel Rattus norvegicus 81 AABR07058102.1 ENSRNOG00000059201 ENSRNOT00000079389 1 1 1 81 7 100330761 100330783 TCACCTCACACCAGAATGG 59 100330698 100330717 GGAGTGTTCCTCTTTCTCCA 59 Novel Rattus norvegicus 81 SNORA40 ENSRNOG00000060664 ENSRNOT00000080742 3 1 1 60 5 128079483 128079502 AAAGGCATGAAAGACAGGTG 59 128079522 128079543 TGTACAGTGAGTTGTTAGTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD89 ENSRNOG00000055019 ENSRNOT00000085682 2 1 1 61 9 46283326 46283344 TCAACAGTTTGCTCTCCGT 60 46283283 46283301 AGACAGTGACTCGCTTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD89 ENSRNOG00000055019 ENSRNOT00000085682 3 1 1 62 9 46283327 46283345 ATCAACAGTTTGCTCTCCG 58 46283283 46283301 AGACAGTGACTCGCTTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057698 ENSRNOT00000080280 3 1 1 62 5 152601544 152601562 ATCATTCCTGGGTCAGGAG 59 152601588 152601606 CAAGTTCTCCGGAAGAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000052644 ENSRNOT00000085529 3 1 1 60 1 36350988 36351009 TCTTGTTATTGGCAAAGCTGTC 60 36350949 36350970 TTACTTGCTCAAGTCAGAACCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD116 ENSRNOG00000060200 ENSRNOT00000080019 3 1 1 66 1 194979943 194979963 TCTCAGTCAAACATTCCTTGG 58 194979897 194979915 GATGACAATAGCGGTGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048308.1 ENSRNOG00000031590 ENSRNOT00000008002 1 1 1 95 5 71867619 71867637 GACAACTTTGGCATCGTGG 60 71867540 71867560 ATCACGCCACAGCTTAGAG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052937 ENSRNOT00000081298 1 1 1 60 1 241451146 241451166 CTGCTGTGTCACATGTATCAG 59 241451188 241451206 GTCATCTTGGGTCATGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056113 ENSRNOT00000080970 3 1 1 60 1 69630392 69630412 TGATTCGGTTAATGTGACTGG 59 69630431 69630452 GGAGAAATATGGAACAGTGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044128 ENSRNOT00000069395 2 1 1 63 20 46580488 46580506 CTCAGCAGCTAAGCAAGAC 59 46580533 46580551 CAGTTCCCAACGTCTTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD127 ENSRNOG00000055941 ENSRNOT00000080348 3 1 1 69 6 86805578 86805599 GCAACTGTGATGAAAGATTTGG 59 86805628 86805647 TTAGAGGGACTGTTGTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017104.1 ENSRNOG00000058491 ENSRNOT00000075684 2 1 1 108 15 11091311 11091332 ACAGATAGAGGCCTTATATCCA 58 11091399 11091421 CTGTGAATTCGTTTAGCTCTG 57 Novel Rattus norvegicus 81 AC129054.1 ENSRNOG00000048460 ENSRNOT00000073887 2 1 1 91 10 12565030 12565049 AACATTGTGGAGCATGTGTC 59 12562659 12564976 ATTGAGCTACCTGAGGACC 59 Novel Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000058224 ENSRNOT00000085804 2 1 1 60 1 72213440 72213458 GTGGGCAGATGTATCACTC 58 72213479 72213500 CTGAACAAATGGAGTGATCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5f1 ENSRNOG00000016000 ENSRNOT00000077057 3 1 3 100 2 208420019 208420037 ATCTTCGCAGACAATGCTG 59 208419687 208419705 GTGACACTTACCCTGGACC 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000061568 ENSRNOT00000079065 1 1 1 60 6 8579241 8579259 GAGAAGATTAGCATGGCCC 58 8579199 8579217 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056809 ENSRNOT00000083140 1 1 1 60 13 108532372 108532390 CTCAAACACAGGAGAAGCA 58 108532414 108532432 GGAATAGTATGAGCGAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017768.3 ENSRNOG00000051485 ENSRNOT00000086722 3 1 1 60 15 30853228 30853249 GCACCTATCAGACTACTTACTC 58 30853267 30853288 TCACTGAGATATTGCACATACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032255.1 ENSRNOG00000028381 ENSRNOT00000033768 2 1 1 69 18 56965395 56965414 CAATTCCCTTTGCGTGAGAG 60 56965340 56965358 TACAAGAAAGCCCACTTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07017841.2 ENSRNOG00000060250 ENSRNOT00000082666 1 1 1 92 15 31769884 31770684 GATACCTCAGAGGAACAAGCA 60 31769502 31769526 GTTGTAAGAATCCTGACGAATAAGG 60 Novel Rattus norvegicus 81 AABR07001899.1 ENSRNOG00000058436 ENSRNOT00000089298 3 1 1 80 1 61504260 61506969 GTCTCTGTTGAGAACTACTGC 59 61507009 61507029 CTCATTACCCTGACAAGAGTC 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061517 ENSRNOT00000092070 1 1 1 78 3 94518646 94518664 CTTAGAGGCATTGCAGGTG 59 94518703 94518724 GAGCATAGACATATCCTCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057525 ENSRNOT00000090274 3 1 1 62 14 58613207 58613227 GGAACGATACAGAGATTAGCA 57 58613251 58613269 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048770.1 ENSRNOG00000031344 ENSRNOT00000049192 1 1 1 60 5 90797114 90797134 ATTGAGCAGAGACAAAGACAG 58 90797074 90797094 GACATCTGAATGGCTCATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058228 ENSRNOT00000083874 1 1 1 60 2 205880393 205880414 TGATGTGTCTGATCTAGTTGTC 58 205880354 205880372 GTATGTGGAGTGGTGAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068750.1 ENSRNOG00000056482 ENSRNOT00000091931 2 1 1 60 9 117484224 117484242 AAAGGCTGGAAGAACACCA 60 117484182 117484201 CTGTACCAGTTTCTGGAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA20 ENSRNOG00000060473 ENSRNOT00000087310 2 1 1 60 1 274674902 274674921 GTGATAGGAGCGGTTATACG 58 274674943 274674962 TCATCTCCGTGTACAATAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059349 ENSRNOT00000086328 2 1 1 60 3 72157176 72157196 TACAGAGAAGATTAGCATGGC 58 72157136 72157157 CTTGAGTTCTTAGGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058901 ENSRNOT00000083478 1 1 1 60 13 39500413 39500431 TAGGTGGCAAAGAGGAGAG 58 39500371 39500394 GTCAGATGTTACAGATCAGAACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058901 ENSRNOT00000083478 2 1 1 60 13 39500394 39500412 GGGCTATGCCTATGATCAG 57 39500352 39500373 ATTGTTAGGCTACTGTTCAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057511 ENSRNOT00000082306 3 1 1 62 13 89311796 89311815 AAGGCTTATCCATTGCACTC 58 89311840 89311858 GAGTTTCCCGCATTTGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018058.1 ENSRNOG00000057750 ENSRNOT00000083365 1 1 1 60 15 37711048 37711071 CCATTGTGGAGAAGTTATCTAGTC 59 37711011 37711030 TGTGCCATGATACTATGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061001.2 ENSRNOG00000055869 ENSRNOT00000082926 3 1 1 60 4 102514760 102514779 GTTACTGTCTGCATCTCTGG 58 102514801 102514820 AATACTCTCGCTTGTCCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057483 ENSRNOT00000079839 3 1 1 60 7 31713762 31713784 GGAACTATCCAAAGATTAGCGTG 60 31713804 31713822 ACTGCTTCATGATTTGCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Herc1 ENSRNOG00000051671 ENSRNOT00000089336 1 1 1 80 8 72178921 72178939 TTGGAGACGGAGACTATGG 58 72178980 72180137 CACAAAGGACATCAACTTTCTG 58 Novel Rattus norvegicus 81 AABR07020815.1 ENSRNOG00000058034 ENSRNOT00000078185 3 1 1 60 13 42220347 42220365 TCCGACACCTTCTTCTACC 58 42220388 42220407 GAGAAGACACGTTGTAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056270 ENSRNOT00000087440 3 1 1 60 3 134461518 134461538 AGCAATACAGAGAAGACTAGC 57 134461478 134461496 TGCTTCATGAATTTGCGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000059105 ENSRNOT00000085302 2 1 1 60 6 51659467 51659485 TGAGGTTTATCCGAGGCAC 60 51659425 51659444 AACATGGATGCAGAAAGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054431 ENSRNOT00000090058 3 1 1 60 10 4544616 4544636 TTGTTGACTCCTGAGATTTCC 58 4544656 4544676 CTACCACCACAAAGTATGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0743.1 ENSRNOG00000027907 ENSRNOT00000076157,ENSRNOT00000056700 1 2 4 114 X 73466671 73467008 TCATGAAGGGTTTGATGGAC 58 73467085 73467103 AGAGTCTGCTTCATGAGGT 58 Novel Rattus norvegicus 81 AABR07064690.1 ENSRNOG00000060564 ENSRNOT00000092179 3 1 1 60 6 90683523 90683543 GGTCTGTGATGTGTATTTCCA 58 90683483 90683502 AGACATGGGTCTCAGAACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028970.2 ENSRNOG00000056130 ENSRNOT00000080445 3 1 1 100 10 1214858 1214877 TACCCACTCTGAACGAAAGG 60 1220434 1221007 CTTATTATATCCTGTGCTCACAGAC 59 Novel Rattus norvegicus 81 AC141344.2 ENSRNOG00000060478 ENSRNOT00000085003 2 1 1 60 5 154438151 154438174 CACTCAAGTTTATCAAGAAGAGGG 60 154438114 154438132 TCCTCCCTCTTTCTCTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014983.3 ENSRNOG00000052897 ENSRNOT00000081849 3 1 1 149 14 42717912 42717931 GTCTCATATTTCACAGCGCT 59 42718043 42718066 TGTCGGGTATTTATTTCTCTGC 59 Novel Rattus norvegicus 81 AC133265.1 ENSRNOG00000059203 ENSRNOT00000084514 3 1 1 100 8 46694494 46694554 GCGTCTCCAGTCTTTATTCTC 59 46694414 46694434 TTGGTGATTTCCCATCTTTGG 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000055461 ENSRNOT00000082980 2 1 1 60 3 176293421 176293439 CCAAGGTGCGATTATTGCT 59 176293379 176293398 CCGTTTCTCCTATGGATCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055104 ENSRNOT00000084472 1 1 1 60 3 142940802 142940821 GGATGTAACTGCTGTGTCAC 59 142940842 142940862 AAACATAGCCTTTCTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051987 ENSRNOT00000087696 2 1 1 60 5 58591043 58591062 CGTGTTCCCAGAAGAAAGAC 59 58591002 58591022 GAACATAACCTTCTCCTCCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057170 ENSRNOT00000082641 1 1 1 60 4 116823530 116823550 ATGTCACATGTGCATTATGGG 59 116823490 116823511 ACACATTGAGCATAGACAAAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056256 ENSRNOT00000080659 1 1 1 60 10 89539677 89539696 GAGTTGGAATAGGAGCTTGC 59 89539719 89539737 GGAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130866.2 ENSRNOG00000059679 ENSRNOT00000079511,ENSRNOT00000079547 3 2 2 80 4 113970086 113970104 ACAGATTGCGAATCCTGGA 59 113970148 113977540 TCTGCAACTCTGTGTCCTC 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000060756 ENSRNOT00000078115 1 1 1 60 3 51030735 51030753 ATGAGGTTTATCCGAGGCG 60 51030693 51030711 GTGAGGGCCTAGCTATCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045463 ENSRNOT00000070730 3 1 1 60 10 76491593 76491616 CGTTTCAATCCTATCTGATCTCAG 59 76491556 76491575 CATCTAAGTAGCAGCCAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052848.1 ENSRNOG00000061249 ENSRNOT00000077487 2 1 1 60 3 79151582 79151601 AGCCATTATTCAAGCTTGCC 59 79151539 79151559 CTGTTGGCCATCACAATCC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000056318 ENSRNOT00000083994 1 1 1 60 7 8737051 8737070 AGTTGTGACTGCTGTATCAC 58 8737087 8737111 CTGAATGTAGAAATAGCCTTTCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000052197 ENSRNOT00000085551 2 1 1 61 3 79566466 79566484 AGAGACTTTGACAGCCCAG 59 79566507 79566527 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000053065 ENSRNOT00000084026 2 1 1 60 15 4539084 4539102 CCACAGCCAATTAAAGCAC 58 4539125 4539144 GCTCTCCACAGTCATTACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000043975 ENSRNOT00000069242 1 1 1 60 3 117069805 117069823 GGTCTATGCTGTCCTGGTG 60 117069847 117069865 CAAATCCTGCTCAGCTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047693.1 ENSRNOG00000036481 ENSRNOT00000054589 2 1 1 60 5 43449226 43449246 ACCAATAGAGAAAGATGCACC 58 43449268 43449286 TGAGCCTAGCCTTTAACGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052337 ENSRNOT00000088717 1 1 1 60 20 27309078 27309098 GTTGATCTGGTTGGCTATGTG 59 27309038 27309058 GAAGGCATGTATATGGAGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059716 ENSRNOT00000085083 3 1 1 60 5 67219860 67219879 ACTGCTATGTCACATATGGG 57 67219819 67219839 TGAATGGAAACATAGCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061274 ENSRNOT00000077104 1 1 1 60 13 74169749 74169770 AAACTGGAACAATACAGAGCAG 59 74169710 74169728 CGAATTTGCGTGTCATCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD83 ENSRNOG00000061767 ENSRNOT00000088691 2 1 1 60 20 4817607 4817627 GATGTTTGCAATTGGGAAGTG 59 4817567 4817588 AAGGGTGATAGATAAGGGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD83 ENSRNOG00000061767 ENSRNOT00000088691 3 1 1 60 20 4817607 4817626 ATGTTTGCAATTGGGAAGTG 58 4817566 4817586 CAAGGGTGATAGATAAGGGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059873 ENSRNOT00000084428 3 1 1 60 19 21459617 21459637 AGCAGTACAGACAAGATTAGC 58 21459577 21459595 CACTTCACAAATGTGCACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121465.1 ENSRNOG00000048692 ENSRNOT00000072375 1 1 1 60 19 37883897 37883916 GCCTCAAAGTCAGAAATCCA 58 37883939 37883957 GCTCATGCCTTTAATCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060231 ENSRNOT00000077180 3 1 1 60 10 60674306 60674328 GAGTACAGAGAAGATTAGCATGG 59 60674268 60674286 CGCTTCACGAATTATTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005533.1 ENSRNOG00000020477 ENSRNOT00000027758 3 1 1 60 1 185171630 185171650 TACAATGAAGTTGCAGTCTCC 58 185171671 185171690 CAGGCTCTTCAATCCTTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000053555 ENSRNOT00000090324 2 1 1 64 20 10281935 10281953 GGGCAACTTCCTTGTTCTG 59 10281980 10281999 TCAGTAATTTCCCTCAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC124926.1 ENSRNOG00000058558 ENSRNOT00000085868 1 1 1 60 X 128298553 128298573 GCTTCTGGCTTAGTAGTTCTG 59 128298593 128298613 CTGGGAACTTGTTAGAATTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036964.1 ENSRNOG00000048500 ENSRNOT00000072719 2 1 1 60 X 8059532 8059553 AGGAAGATTTGCTCTTCTTTGC 60 8059493 8059512 CAAGGATCTAGCAGTTGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044850 ENSRNOT00000070117 2 1 1 60 5 28555448 28555468 TGCTAAGTAGGATGAGACCTG 59 28555408 28555428 AACTATAGCTTCACCTATGCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000052741 ENSRNOT00000087314 2 1 1 83 10 85724722 85724740 TTGCTGATGACCCACTGAG 60 85724657 85724676 TAAACAACACAGCATGTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051895 ENSRNOT00000079952 3 1 1 60 X 135846449 135846467 TTGGTCCAGGGTATACGAG 58 135846490 135846509 CTTGAGAGCTTGTTTGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA50 ENSRNOG00000061509 ENSRNOT00000081675 2 1 1 60 19 12755596 12755615 GATGTGGCTTGTTTACATCC 57 12755555 12755575 CTGCTGAAGGAATCACTAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054117 ENSRNOT00000088690 3 1 1 60 5 36591877 36591895 CTGCTATGTTGCATGAGCC 59 36591917 36591937 CACAGAGCAAATACATAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056732 ENSRNOT00000087228 2 1 1 60 18 62405895 62405914 TTTGTCTGCTCTAGATGACC 57 62405936 62405955 AGAAGATGCACAAGGAATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061078 ENSRNOT00000077825 1 1 1 73 13 109990797 109990815 GTGTTTCACTCCAGACGTG 59 109990742 109990760 TTAGGAGAGCACAGTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054720 ENSRNOT00000078621 3 1 1 60 19 34524174 34524194 ATGTATTGGTACTTGGCAGAG 58 34524215 34524234 ATGTCCACAGGTCAGAACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027744.1 ENSRNOG00000057345 ENSRNOT00000082713 2 1 1 60 17 43111009 43111033 GACTTAGGAGATAAGAAGGAAGGAG 60 43110973 43110997 CTGCTATCCTGTCAATAACTTTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029741.1 ENSRNOG00000055994 ENSRNOT00000088207 1 1 1 60 10 48890809 48890828 ACAAACCCGATATGGTTGAG 58 48890848 48890869 GTTTCTGTCTTCTTCAACTTCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018048.2 ENSRNOG00000059279 ENSRNOT00000085358 2 1 1 80 15 37276453 37276471 ACAGGATCTTGGGACACAG 59 37268176 37268457 GTGAAGCAAAGGGATTCCC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000057386 ENSRNOT00000078924 3 1 1 63 5 170919691 170919709 ATTCAGCTGATCCGATTGG 58 170919736 170919754 AAGGACACATATGGAGCGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA65 ENSRNOG00000055379 ENSRNOT00000080333 2 1 1 60 4 34530328 34530351 GTACAATACTGAACTGACAGTGAG 59 34530291 34530312 ATTCATATGTAGGACAGCCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000060766 ENSRNOT00000088684 1 1 1 60 18 31515573 31515591 TCTTGGAAGCTAAGCAGGG 59 31515610 31515633 CTACATCCTACATACCTCCTATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058914.1 ENSRNOG00000032026 ENSRNOT00000044982 2 1 1 79 7 142695728 142695746 CACTCTACAACTACCCGGC 60 142695665 142695683 AAACTTGTCAAAGGGCTCC 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000059046 ENSRNOT00000091775 1 1 1 60 15 17051126 17051147 ACAATACAGAGATTAGCATGGC 59 17051087 17051107 TGGAAGCTTCACGAATTTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000060256 ENSRNOT00000079484 1 1 1 60 1 61398193 61398212 TAGAATGGACTCCTGGTCAC 59 61398152 61398170 TTCTCCCAGTAGGAAGGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017868.5 ENSRNOG00000057857 ENSRNOT00000078174 3 1 1 73 15 32012570 32012589 TTACTCCTAGGCCTTCACCT 60 32012762 32012780 ATTTGTTTGACCTGCTGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054027.1 ENSRNOG00000047995 ENSRNOT00000070910 1 1 1 60 3 137018721 137018739 CTGTGTAGCCCTAGCTGTC 60 137018763 137018781 CTCTGAGTTTAAGGCCAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053440 ENSRNOT00000084604 3 1 1 60 X 96953046 96953069 ATGTTAGTAGGAGGTAGAGAAGAG 59 96953009 96953027 TCAGGACATCAGTGAGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096370.3 ENSRNOG00000060994 ENSRNOT00000088065 3 1 1 80 1 259685312 259685330 CCGAGAAGTGGGAATCCTG 60 259684841 259685271 CAGGGTCATAGAGTGACTTAGG 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000060313 ENSRNOT00000078449 1 1 1 60 7 98454795 98454818 GTCAAGAGTATATGAGTAGCTGAG 58 98454835 98454855 GATCTTGAGAGCTTGTTAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060083 ENSRNOT00000091214 1 1 1 60 18 40063412 40063430 ATGAGTCAGTAGGTGGCAG 59 40063454 40063472 CTCAGGTCAGAACACTGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000055100 ENSRNOT00000087935 1 1 1 60 7 45339158 45339182 GTTCTTATATCAATCAGGGACAGAG 59 45339197 45339218 GTTACCAAGCTAGGATAAACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058823 ENSRNOT00000087885 2 1 1 60 18 20841850 20841868 CACATGTGCATTTGTCGGT 60 20841890 20841910 GTCAGAACACTCAGTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032441.1 ENSRNOG00000046113 ENSRNOT00000075102 2 1 1 61 18 65750959 65750977 CTTACAAAGCTCCGCTTGC 60 65751002 65751020 GACTGCTTCCTAACGTCGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032441.1 ENSRNOG00000046113 ENSRNOT00000075102 3 1 1 63 18 65750959 65750977 CTTACAAAGCTCCGCTTGC 60 65751004 65751022 TGGACTGCTTCCTAACGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA69 ENSRNOG00000061195 ENSRNOT00000083166 1 1 1 60 X 123705909 123705928 AGAGCAGGTAGCAATTACAG 57 123705868 123705888 TTTCAGCAGGATTAATGGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065714.1 ENSRNOG00000059121 ENSRNOT00000077113,ENSRNOT00000084547 3 2 2 84 6 139865495 139911804 TTTGAAAGGTGTCCAGTGTG 59 139865430 139865448 ACAGGAGAGTTTCAGGGAC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060957 ENSRNOT00000084449 1 1 1 60 5 27757686 27757704 GTCACGTCTGAGCAAAGTG 59 27757725 27757746 GTCAGATGTTCATAGGACAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rdh5 ENSRNOG00000053850 ENSRNOT00000081756 2 1 1 81 7 3340896 3340915 TGCTGGATATCACTGATCCC 59 3340707 3340852 CCAAAGAGCCCAGTTTCTC 59 Novel Rattus norvegicus 81 SNORA36 ENSRNOG00000058062 ENSRNOT00000090209 2 1 1 60 3 138472727 138472745 TTGGTTCAGAGCAACTTCC 58 138472768 138472787 CTCAGCCAATTTCAATGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052989 ENSRNOT00000083014 3 1 1 61 18 27933515 27933533 GAGAAGATTAGCATGGCCC 58 27933472 27933491 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120262.3 ENSRNOG00000059130 ENSRNOT00000079416 1 1 1 112 1 198936726 198936744 AAATGAGGAGTGGGAGCTG 59 198936817 198936838 GGTAAAGTAGAAAGTGACAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120262.3 ENSRNOG00000059130 ENSRNOT00000079416 2 1 1 113 1 198936726 198936744 AAATGAGGAGTGGGAGCTG 59 198936818 198936839 AGGTAAAGTAGAAAGTGACAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052888 ENSRNOT00000078648 3 1 1 60 18 24205941 24205961 GTGTCAGTAGGTGACAAAGAG 58 24205901 24205919 TCCCTGGGTCAGAATACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060834 ENSRNOT00000092219 2 1 1 60 18 16703864 16703884 AGCCACACTTTAGTTGAAGAC 59 16703903 16703924 GGCTTAGGAACAAACAGTTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054178 ENSRNOT00000081350 3 1 1 71 3 70877749 70877769 TTTAGGTTTGGCTGCTTTGTC 60 70877797 70877820 CACTTAATGTAGACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000058165 ENSRNOT00000088040 2 1 1 60 6 20467590 20467611 AGTCAGTTACAGATGGAAATCC 58 20467629 20467650 GTCAAATGGAGTAGTGAGAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053570 ENSRNOT00000078965 2 1 1 61 4 8204293 8204311 CTGTCACCTCACTGATGAC 58 8204331 8204354 GGGTACATTAGACTAAACATCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135265.1 ENSRNOG00000042387 ENSRNOT00000046606 1 1 1 60 18 70960416 70960437 GCTTTAATGTGTCAGTACAGGA 59 70960456 70960476 TCATAGATACCGAAGTAGGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057723 ENSRNOT00000089109 2 1 1 60 5 86556455 86556475 TTGAGTTCTGCTTCTAGAACC 58 86556415 86556436 ACACTATTAGGAAATGGTGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000060885 ENSRNOT00000081734 3 1 1 60 X 32924651 32924669 GACGAAGACAGAAGAGGTC 57 32924692 32924711 AGGTAGGAATGCCTTAACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054766 ENSRNOT00000088295 3 1 1 62 15 76116743 76116761 TCTGTCACATGTGGGTCAG 59 76116699 76116722 GGTCAGAACACTATAGTTATAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058763 ENSRNOT00000083080 2 1 1 80 X 119811288 119811306 GCTCACTTCAGCAGTACAC 59 119811350 119811368 TAACATGTCATCCTTGCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060702 ENSRNOT00000080765 1 1 1 60 7 118580802 118580825 TTGTCAGAGAAGGTACTATGATCG 60 118580765 118580783 ATCAGCACATCCGAAATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061345.2 ENSRNOG00000057086 ENSRNOT00000087750 2 1 1 60 4 117757956 117757974 CCTAGTGTCTGGCTCTTGG 60 117757914 117757932 CAGGCAAAGGAGAAAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052060 ENSRNOT00000078488 1 1 1 60 5 70827949 70827967 CATTGTGCTTCCGTAGGTG 59 70827987 70828009 AGTAAGTGTAGACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018115.2 ENSRNOG00000036381 ENSRNOT00000017084 1 1 1 63 15 40522954 40522975 AAGAACAGTATCTCAGCTACAG 58 40522912 40522930 CTGGCTTCAAACACATCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018115.2 ENSRNOG00000036381 ENSRNOT00000017084 2 1 1 64 15 40522954 40522975 AAGAACAGTATCTCAGCTACAG 58 40522911 40522929 CCTGGCTTCAAACACATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055173 ENSRNOT00000089437 2 1 1 60 15 35649512 35649530 CCTGTCTTCAGTCAAGGGT 59 35649470 35649489 GCTTGTTTGGAGGTTCTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052698 ENSRNOT00000091422 1 1 1 60 20 867054 867077 GAGAGGGTATGTCTACACTTAGTG 60 867017 867041 CAAGGCTACTAATTACTCAGAAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC132539.1 ENSRNOG00000052063 ENSRNOT00000079648 2 1 1 85 8 119261888 119261906 TTAGAGGAGGACTGTGAGC 58 119261955 119262138 CTGAAGAAGTGCTCCTCCA 59 Novel Rattus norvegicus 81 AABR07061039.1 ENSRNOG00000058405 ENSRNOT00000092130 3 1 1 81 4 103049573 103049970 TGGATTCCTGCTTCCAGAG 59 103049510 103049529 TAGAGACTTGACCTCCAAGG 58 Novel Rattus norvegicus 81 SNORA44 ENSRNOG00000053495 ENSRNOT00000089058 3 1 1 61 15 109415296 109415314 AGAGACTTTGACAGCCCAG 59 109415337 109415357 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058090 ENSRNOT00000088128 3 1 1 62 11 68597920 68597941 ATATACCAGGATCAGGAAGGTG 59 68597964 68597982 CACATCCCATGTGCAATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054443 ENSRNOT00000090503 3 1 1 60 20 36760102 36760122 TCTCCTAGAGGCATTGTAGGT 60 36760140 36760162 GAAGACAGAGAATAGACAGAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059168.2 ENSRNOG00000061080 ENSRNOT00000077289 2 1 1 80 4 6185556 6185576 CTGTTACTCCATTAAGGCGTG 59 6185616 6187357 TATCTTCTCCCGATTGTCTGC 60 Novel Rattus norvegicus 81 AABR07065589.1 ENSRNOG00000053429 ENSRNOT00000079092 1 1 1 60 6 135877821 135877839 ATCCAAGCCACTGAACCTC 60 135877779 135877797 TGTGGTCCGAGAATACCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115273.1 ENSRNOG00000048185 ENSRNOT00000070965 2 1 1 68 19 56088735 56088753 CTTCTCTGTGTAGCCCTGG 60 56088785 56088803 GATCTCTGAGTCTGAGGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061892 ENSRNOT00000081583 3 1 1 60 11 64748619 64748637 CTCCTCTGCTAGAACCTCC 59 64748661 64748679 ACGTCTGTCTTTCAAGCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051781 ENSRNOT00000084234 1 1 1 60 19 39207210 39207231 GAAGGAATCAGGAAAGATTAGC 57 39207171 39207192 CTGCTTCATGAATTTCCATGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057820 ENSRNOT00000081557 3 1 1 75 19 27449899 27449920 CGCTTCAGAAGTACATATACGA 58 27449845 27449864 AATTTGCTGCTCATCCTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033045.1 ENSRNOG00000000713 ENSRNOT00000000903 1 1 1 60 11 2786078 2786099 CTGCTGACGATAGTTGATACTC 59 2786039 2786060 GCCAGCAATTACTATTATCCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053980 ENSRNOT00000092010 3 1 1 60 11 3269666 3269685 GAACCAGCTCTTGAGAAGAC 58 3269704 3269726 GAAAGTACTCTTACCATTGACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055052 ENSRNOT00000083053 1 1 1 60 9 115765873 115765892 TAGGTAGGTGTTCTCCTCTC 57 115765915 115765933 GTAGCCCTCTTCAGTCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044047 ENSRNOT00000069314 2 1 1 60 9 110547390 110547408 CTTTGAAGCCGTTCCACTC 59 110547348 110547366 CCCTGCTTAGCTTCTGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA31 ENSRNOG00000060362 ENSRNOT00000079960 1 1 1 60 18 30579169 30579187 AAAGGAAACCCTCCCTGTG 60 30579206 30579229 GATGTACTTCCTATGATGTACTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000058440 ENSRNOT00000084096 2 1 1 60 5 35285139 35285157 AAGGGTTTGTACAGAGTGC 58 35285181 35285199 GAGAACCCAATCTCAGGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057257 ENSRNOT00000082074 2 1 1 60 4 53658042 53658063 GATACTGTGAGCAGAGAAATGG 59 53658003 53658024 ACATCTCACATGCAATAGAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000031202 ENSRNOT00000078058 1 1 1 80 1 169494037 169494057 AAGCTCAGGATATGAAAGGCA 60 169493468 169493735 GTAGATTCATATGAACCCAGTATCG 59 Novel Rattus norvegicus 81 SNORA42 ENSRNOG00000052242 ENSRNOT00000080776 1 1 1 60 18 60869538 60869557 GCGTGGATTTGGATTTATGG 58 60869579 60869598 CTAGCATGGGACACTATGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000052911 ENSRNOT00000090282 2 1 1 60 18 62745434 62745453 TTTGGATTTATGGCAGGCTC 59 62745476 62745494 GTTTGCTCTAGCATGGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034324.1 ENSRNOG00000050506 ENSRNOT00000075798 3 1 1 60 11 65309281 65309300 GCCTTGAACTCAGAGATCCA 60 65309240 65309258 CCACATGCCTTTAATCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068360.1 ENSRNOG00000050471 ENSRNOT00000070987 1 1 1 82 9 101251575 101251593 TCTTCACATCATTGTGGCA 57 101251638 101251659 TGATCTGTTTGGTCTTTCCA 57 Novel Rattus norvegicus 81 SNORA51 ENSRNOG00000055249 ENSRNOT00000087721 1 1 1 60 4 114560985 114561006 AATAAACTACCCTGTGTACACC 58 114561027 114561045 GCATTCACGATACAGACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057617.1 ENSRNOG00000057824 ENSRNOT00000039430 2 1 1 60 7 80457486 80457504 CTGGTAACTTACGTGCCTG 58 80457444 80457463 TTCTCATCCACATTGACCGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059076 ENSRNOT00000082832 2 1 1 60 11 56015595 56015614 GATCACCAGGGTTAGTTCAG 58 56015636 56015655 ATGAGTGAAGAAGGGAATGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049149.1 ENSRNOG00000024197 ENSRNOT00000029509 2 1 1 60 5 107608701 107608719 GAAGTTCTTGAATGGCGTG 57 107608659 107608680 ATTTCTTAGGCTTTGACAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000058725 ENSRNOT00000087159 2 1 1 60 5 91133001 91133019 GATGAAGAACGCAGCTAGC 59 91133041 91133061 GTCGATGATCAATGTGTCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047799.1 ENSRNOG00000058066 ENSRNOT00000091281 1 1 1 61 5 48410507 48410525 GATGTCCAAGGTCAAGGTG 58 48410550 48410568 GAAAGACAGCAAGACAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060993 ENSRNOT00000091180 1 1 1 60 7 6059061 6059080 CTACTAGTGTTGCAGGTGTG 58 6059102 6059121 CTCATCTCTGCCACCTACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059109 ENSRNOT00000085274 1 1 1 66 6 75606889 75606907 TTATCCATTGCACTCCGGA 59 75606841 75606859 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000052936 ENSRNOT00000084898 2 1 1 67 11 19816812 19816830 CAGGACAGGTACAGCAGAG 60 19816861 19816879 TTGAGGCATATGGACAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD71 ENSRNOG00000059926 ENSRNOT00000082476 3 1 1 60 19 41824890 41824908 TGAAGCAAGGAGTGATCCA 59 41824848 41824867 TCAGCAATGTGAGTTTCAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061178.1 ENSRNOG00000054121 ENSRNOT00000085062 2 1 1 90 4 108701010 108701028 AACAAGACCTTGCAAACCG 59 108696741 108700956 TCCTTCAGCTCCTGTTGTC 59 Novel Rattus norvegicus 81 U2 ENSRNOG00000056630 ENSRNOT00000091504 1 1 1 60 11 69743443 69743461 GACTCGGCAGTTAAGAGTG 58 69743484 69743503 GATACTGAGAGCCAAACTCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056630 ENSRNOT00000091504 2 1 1 60 11 69743451 69743470 AGTTAAGAGTGCTTGTTGCT 58 69743493 69743511 CCAGCATGGATACTGAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053625 ENSRNOT00000088617 1 1 1 82 11 25084272 25084290 GCTTCAGCAGCACATATCC 59 25084336 25084354 ATGAACTCGCCTGTCATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044997 ENSRNOT00000070264 3 1 1 61 4 143489655 143489673 CACATGCCCATCTCATCTG 58 143489695 143489716 ATCAAAGTGTTACCTAGACCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000052655 ENSRNOT00000084876 1 1 1 60 4 101119523 101119544 TCTTGCTAATTGACAAGGAAGG 59 101119484 101119502 ACTGCTTTCATTGTGTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009457.1 ENSRNOG00000046362 ENSRNOT00000071824 3 1 1 109 2 98613927 98613945 TCTTGAACTGGAGGATGCC 59 98613832 98613854 AAACCGGATAACCAGTTGC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061079 ENSRNOT00000091924 1 1 1 60 7 93146531 93146549 AGTAGGTGGCAGAGAAGAG 58 93146489 93146510 CTAATCCTTCAGGTCTGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055492 ENSRNOT00000090204 1 1 1 60 6 30232911 30232931 AAGACTGGTCTTCTGTCAAGG 60 30232953 30232971 TGGTTTGGAGCTCTGTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064983.1 ENSRNOG00000004582 ENSRNOT00000006043 2 1 1 60 6 103640233 103640254 TTCAATGTTGGCATTCTACCTG 59 103640275 103640293 GTGCAGTGATGACCATCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013154.2 ENSRNOG00000058371 ENSRNOT00000091767 2 1 1 60 2 225025931 225025950 GCCTAACTTCTGATCCAGTC 58 225025890 225025910 AACTTGTTGAAGTCAGTCTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064102.1 ENSRNOG00000024969 ENSRNOT00000039776 3 1 1 60 6 64649468 64649489 AGGAGGAAATACTAGACATTGG 57 64649508 64649528 AAACTCTCATGTCTTCTTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063197.1 ENSRNOG00000051746 ENSRNOT00000087358 3 1 1 60 6 21709502 21709520 AGGATGTGTCTACTTGGGA 57 21709544 21709562 GAAAGATGGGCTGATGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC136847.1 ENSRNOG00000046430 ENSRNOT00000074835 3 1 1 60 11 71469345 71469363 TGTAGTCCTGGCTATCCTG 58 71469386 71469405 AATCTCTGAGTTCAAGGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043725.1 ENSRNOG00000055568 ENSRNOT00000086623 3 1 1 60 19 36390214 36390234 GCTGACGATAGTTGATACTCC 58 36390253 36390274 CTGCCAGCAATTACTATTATCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000076841,ENSRNOT00000085052,ENSRNOT00000088581 3 3 6 60 10 74882541 74882559 GCCTGTACTTCATCTCACC 58 74882902 74882922 GATTCCAAAGTGCTCGATCTC 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000055628 ENSRNOT00000090915 2 1 1 60 9 15916206 15916225 AGAAGATTGCATGATCCCTG 58 15916248 15916266 TCAATATGGAACGCCTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060092 ENSRNOT00000086170 1 1 1 72 9 107804416 107804435 TGATCTGGCTGTGAAATCTC 58 107804363 107804381 AATCCACCAAGTCAGTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055864.1 ENSRNOG00000046641 ENSRNOT00000074602 2 1 1 60 7 14155207 14155225 GCCTTGAACTCAGAGATCC 58 14155165 14155183 GCTCATGCCTTTAATCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044494 ENSRNOT00000069761 3 1 1 60 17 61415745 61415763 TGATCTCGGAAGTGAAGCA 59 61415703 61415721 TGGCCTTAGGAAGACTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000054642 ENSRNOT00000078054 2 1 1 60 17 81859224 81859247 GGCTAAGATCAAGTGTAGTATGTG 59 81859266 81859284 CAGCTGCCAAATTCACCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060588.1 ENSRNOG00000027186 ENSRNOT00000035078 1 1 1 61 4 82432744 82432763 CATCTCTGCGTGAGTATCTC 58 82432702 82432720 CACAGAGGCCTCTTAGTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033465.1 ENSRNOG00000055484 ENSRNOT00000084837 1 1 1 114 11 22852252 22852273 TATTACCTCAACCAGGGCG 59 22852347 22852369 GTCTTGAGTATTTGTCATCTGGG 59 Novel Rattus norvegicus 81 AABR07065643.1 ENSRNOG00000060451 ENSRNOT00000077743 1 1 2 102 6 138536181 138536283 TCAAAGCTGTCTCCTGTCC 59 138536097 138536115 TGAGAACCCAGAGACAGTG 59 Novel Rattus norvegicus 81 U2 ENSRNOG00000061083 ENSRNOT00000077425 3 1 1 60 10 89558409 89558427 AGTTGGAATAGGAGCTTGC 58 89558450 89558469 TGGAGGTACTGCAATACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000733.1 ENSRNOG00000058047 ENSRNOT00000077927 2 1 1 80 1 24855730 24855751 AACTTAGAGATGGAGAACACTG 58 24855042 24855690 GAGCAGGTTTCTAGAGAAGG 57 Novel Rattus norvegicus 81 AABR07033540.1 ENSRNOG00000054029 ENSRNOT00000082485 2 1 1 80 11 26721286 26721307 AGACAGACAGATAGACCAATGG 59 26721223 26721247 CCTTTGTCAAACAAGTGACCA 59 Novel Rattus norvegicus 81 AABR07021558.1 ENSRNOG00000055673 ENSRNOT00000088425 1 1 1 80 13 78328725 78328744 GGGTTGTTTCTTGCTTTCAC 58 78328656 78328678 CGGGTTCATTTATCTCTTTGGT 59 Novel Rattus norvegicus 81 Rn60_20_0464.2 ENSRNOG00000051272 ENSRNOT00000076600 2 1 3 121 20 44608169 44608187 TGGAGGAAGGTGTTCAGAG 59 44602974 44602992 CAAGACCTGTCAGGACCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AC113635.2 ENSRNOG00000056335 ENSRNOT00000081214 2 1 1 60 2 209834772 209834790 GAAGACAAATTGGGCCAGG 59 209834812 209834833 TCAACTCTAGCTGCTTCTAAGG 60 Novel DesignNoJunction Rattus norvegicus 81 ENSRNOG00000050347 ENSRNOT00000073923 1 1 1 80 10 89335747 89337720 CAAGAAGGATATAAAGCCCGT 58 89335687 89335705 AGCTCCATCTCGTCATCTC 59 Novel Rattus norvegicus 81 AABR07067233.1 ENSRNOG00000059387 ENSRNOT00000081277 2 1 1 80 9 35925608 35925631 GAGATTTCACCTCACATGCG 59 35925673 35925692 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 ENSRNOG00000061764 ENSRNOT00000082700 2 1 1 80 13 92669956 92669979 CTTCCCAGGAAATAGGTCCC 60 92670027 92670045 CCAGGAAAGTGGAGAGGAG 59 Novel Rattus norvegicus 81 AABR07015859.1 ENSRNOG00000058434 ENSRNOT00000078252 1 1 1 80 14 81713810 81717564 CTTACAGCAGACTCTGACC 57 81713748 81713768 AGTAGCTTCTGGTATTCAAGG 57 Novel Rattus norvegicus 81 AABR07038219.1 ENSRNOG00000052118 ENSRNOT00000084562 2 1 1 60 X 43293744 43293764 GCAACAACAGATTATGTCACC 58 43293783 43293804 CGAATATACAAAGGAACGAAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Spn ENSRNOG00000036711 ENSRNOT00000055013 1 1 1 124 1 198576786 198577166 TTAAGCTGGTCCCAACTCC 59 198576680 198576698 ATCGTCATCGTATTCGGCA 59 Novel InUTR Rattus norvegicus 81 AABR07019895.1 ENSRNOG00000056798 ENSRNOT00000070835 2 1 1 60 13 6456361 6456381 TCCATCATGTTCTAGTCACAC 58 6456321 6456342 ACTAGCATCTCTACTTCTTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045006 ENSRNOT00000070273 1 1 1 60 13 79439206 79439227 CTGAATGACCTGATCTAGTCTG 58 79439167 79439186 AAGTATTAACCAGGCCTGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030603.2 ENSRNOG00000052459 ENSRNOT00000085552 1 1 1 71 10 95431204 95431223 GCATAAAGCTTGTCTCACCC 59 95431152 95431173 CATTCTCTTACTATACAGCGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055174.1 ENSRNOG00000058180 ENSRNOT00000091013 1 1 1 66 7 380961 381671 TAAGTTCAGCTCCCAGAGG 58 381701 381719 AAGTCTCCCTGGGTAAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 U6atac ENSRNOG00000055883 ENSRNOT00000089208 1 1 1 60 8 49201867 49201888 AAAGAAAGAAGTTAGCCTTCCC 59 49201907 49201927 TGTGTTAGTAAACTCAAGGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097575.1 ENSRNOG00000046927 ENSRNOT00000074227 2 1 1 153 12 46915143 46915161 GCTCAGACACAAAGACACC 59 46915280 46915303 GATGCTGACGTGTTGAGAG 59 Novel Rattus norvegicus 81 Rn60_20_0049.10 ENSRNOG00000058987 ENSRNOT00000082491 3 1 1 91 20 4900273 4900791 CCATCTTCAACAGGTGCAC 59 4900200 4900218 ATCCAGGTTGAGTTCCCTC 59 Novel Rattus norvegicus 81 AABR07024757.1 ENSRNOG00000050966 ENSRNOT00000072221 3 1 1 80 16 14864549 14864572 AGATTTCACCTCACATGCGA 60 14864488 14864508 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060922 ENSRNOT00000078605 1 1 1 60 8 71593785 71593803 TGTGTCACATGTGCATCAG 59 71593743 71593763 AGAACAGAGTGTAGACATAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060922 ENSRNOT00000078605 3 1 1 60 8 71593785 71593804 CTGTGTCACATGTGCATCAG 60 71593744 71593764 GAACAGAGTGTAGACATAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060736 ENSRNOT00000083997 3 1 1 61 8 13778525 13778547 GGGAAATACTGTGATCATGAAGG 59 13778486 13778507 TCCAGAGCGTCATAGATAAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041897 ENSRNOT00000063650 1 1 1 60 8 15461646 15461667 CATCTTGAATGTTACCCATCTC 57 15461607 15461627 CTTACTACTTCCAAACCTGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141517.1 ENSRNOG00000057297 ENSRNOT00000086156 1 1 1 80 1 72966512 72966534 AGATTTCACCTCACATGCG 58 72966450 72966469 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000054754 ENSRNOT00000080293 3 1 1 60 8 126890708 126890726 GATGAAGAATGCAGCCAGC 60 126890749 126890768 GTCCATGATCAATGTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA20 ENSRNOG00000056888 ENSRNOT00000086106 1 1 1 60 8 76903405 76903429 GTGATAAGAGTGGTTATACACATGG 60 76903445 76903465 CCATCTCCATGTATAATGGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07045047.1 ENSRNOG00000053110 ENSRNOT00000079499 2 1 1 60 20 32797863 32797884 GACATGACACATAGATGCACAC 60 32797824 32797842 TCTGCTAACCCTCTTCCTC 58 Novel DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 AABR07024722.1 ENSRNOG00000056897 ENSRNOT00000080161 1 1 1 80 16 12662102 12662120 TGCCTATGGCCATTTACTC 57 12661915 12662058 CTTCTCATCCAGGTCTGTG 57 Novel Rattus norvegicus 81 AABR07025051.2 ENSRNOG00000053090 ENSRNOT00000083479 2 1 1 78 16 26592242 26592260 ACTTCTTCCAGAACCCAGG 59 26592182 26592201 TCTAGGTCCTTCCAGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024825.1 ENSRNOG00000048427 ENSRNOT00000071397 1 1 1 60 16 18380520 18380539 GAACCTTGTTGCTGAAATCC 58 18380479 18380498 TGCCTCATCCTTAACTTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044415 ENSRNOT00000069682 1 1 1 60 3 96060118 96060137 ACACAGTCTCAACAGATCTC 57 96060160 96060178 CACATCTAAGCACCAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056303 ENSRNOT00000079927 3 1 1 61 3 123381617 123381639 GATACAGAGAAGATTAGCATGGC 59 123381659 123381678 GGAACGCTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024907.1 ENSRNOG00000051631 ENSRNOT00000091071 1 1 1 60 16 21768047 21768066 CATGTGCTATCGAAAGTGTG 57 21768006 21768025 TGGAGCTGTTAGTATAGCGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014745.1 ENSRNOG00000060277 ENSRNOT00000089286 2 1 1 81 14 29645518 29650842 CAAGAAACGACAAGGTGGG 59 29645455 29645473 TGGGAAAGAGGATGTGCAG 60 Novel Rattus norvegicus 81 AABR07031168.1 ENSRNOG00000055612 ENSRNOT00000085903 2 1 1 81 18 3015966 3015986 CACTCGAGATTTCTGTTTCCC 59 2900539 3015923 TTTCCATTGCTCAGCAGTG 59 Novel Rattus norvegicus 81 AC125757.1 ENSRNOG00000058467 ENSRNOT00000087795 2 1 1 79 5 2888558 2888576 TTTGACCTTTCACCACAGC 59 2888307 2888325 ACAAGTGCTGCCAAATGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07062615.1 ENSRNOG00000061521 ENSRNOT00000078708 1 1 1 83 6 74185 75597 CCACTGCAGAGATGGTCTC 60 75638 75662 GTCACTAATCTGTTATCCTTCTTCC 59 Novel Rattus norvegicus 81 AABR07031393.1 ENSRNOG00000052995 ENSRNOT00000082044 2 1 1 80 18 12140922 12140940 GATTGGCCAACGAATGGAC 60 12140982 12141521 AAACTCAAGGAAGAAGTGCAG 59 Novel Rattus norvegicus 81 AABR07031402.1 ENSRNOG00000059577 ENSRNOT00000083984 2 1 1 105 18 12348296 12379462 TACACATGCTGAAGAGGTGG 60 12348210 12348229 ATTGTTACACAGCAGCACTG 59 Novel Rattus norvegicus 81 AABR07031404.1 ENSRNOG00000061117 ENSRNOT00000081412 3 1 1 102 18 12390174 12390193 TTTCCAGTCATGTGGAAGAG 58 12384195 12390110 TTGTTCTTAAGGTTCCCGTC 58 Novel Rattus norvegicus 81 AABR07062775.1 ENSRNOG00000054672 ENSRNOT00000084160 1 1 1 105 6 7395656 7416110 CTTCTCTTTGGGCTTGGGA 60 7395569 7395587 TTCTTGCTCCAGCTTCTCC 60 Novel Rattus norvegicus 81 AABR07015015.1 ENSRNOG00000056503 ENSRNOT00000085232 3 1 1 98 14 45395637 45396216 GCAAAGGAACAGAGGTCTC 58 45395557 45395575 ATGAGAGGGTGTAAATGCC 57 Novel Rattus norvegicus 81 AABR07047054.1 ENSRNOG00000054679 ENSRNOT00000081873 2 1 1 81 5 17577765 17577784 CCTACTAGTCCAGACGTCAC 59 17560719 17577721 CTGGCTCCTTCCATATGGG 60 Novel Rattus norvegicus 81 AABR07029639.1 ENSRNOG00000058124 ENSRNOT00000086993 1 1 1 80 10 42310899 42312568 GTACCAGAAAGGGTCTTTGTC 59 42312607 42312628 CATTTGTTCATGTCTTCTCAGG 58 Novel Rattus norvegicus 81 AC097901.1 ENSRNOG00000052984 ENSRNOT00000080737 2 1 1 80 10 44148404 44148426 CTCTTTGGATTCTCCATATCAGC 59 44147875 44148367 CTTTCTCATGGAGTCTGTTCCT 60 Novel Rattus norvegicus 81 AABR07015517.3 ENSRNOG00000061322 ENSRNOT00000091758 1 1 1 80 14 61101630 61111916 TGACATTTGAGGTGGTTGG 58 61111958 61111978 ATCTCTTCTTTCACCCAAAGG 58 Novel Rattus norvegicus 81 AABR07029768.1 ENSRNOG00000052088 ENSRNOT00000081115 3 1 1 87 10 49359603 49361411 CTCTCATAGTGAGAATGCACC 58 49359536 49359554 TCTTCCATGTCTTTGCTGG 58 Novel Rattus norvegicus 81 AABR07029895.1 ENSRNOG00000055441 ENSRNOT00000090175 3 1 1 61 10 57952034 57952052 TCGCGTTAAAGTCCAAGTC 58 57929745 57929765 TCTTAAATCATCTCTGCCGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07015648.1 ENSRNOG00000057570 ENSRNOT00000081907 2 1 1 96 14 68704182 68704200 TGAATGAAATGGAGGGCGT 60 68699040 68704122 ATCTGAAAGCAGCTTGGGT 60 Novel Rattus norvegicus 81 AABR07030085.1 ENSRNOG00000053262 ENSRNOT00000088849 3 1 1 62 10 66582269 66582287 TTGAGGGAGCTGCTTTCTC 60 66582778 66582796 CGTCTTCTGTGTTGCAAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07015652.1 ENSRNOG00000054995 ENSRNOT00000084963 3 1 1 75 14 68796351 68796372 CCTGTGAAACAATCTTAGGGAG 59 68790467 68790485 AGTCCTCTGCACGATTACG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07047389.1 ENSRNOG00000059643 ENSRNOT00000077777 3 1 1 83 5 30720856 30720875 CTGCTCAACAGTGTCTAAGG 58 30685062 30720816 CTAGTTCCATTTAGAGATAACCTGG 59 Novel Rattus norvegicus 81 LOC102550206 ENSRNOG00000058088 ENSRNOT00000088269 2 1 1 82 1 14508054 14508072 CTGTAGTAGGCTTGTGGCA 59 14508117 14508426 TGCCACTGATTATGTCTGGG 60 Novel Rattus norvegicus 81 AABR07000484.1 ENSRNOG00000054373 ENSRNOT00000077965 2 1 1 82 1 14527830 14527848 ACTTGGCCCTGAACTACTG 59 14527893 14549231 TATCCAGCTTAGTGCCACTC 59 Novel Rattus norvegicus 81 AABR07015784.1 ENSRNOG00000055215 ENSRNOT00000081644 1 1 1 98 14 76273083 76274055 GAATACTGCAGGATCCTGGA 59 76274116 76274134 TGCTGTCTCTGTCGATGTG 60 Novel Rattus norvegicus 81 AC110488.1 ENSRNOG00000011990 ENSRNOT00000015955 3 1 1 63 5 57738135 57738154 AGGGAAAGAAGAAAGGAAGG 57 57730229 57730248 CTATGACATTGATGTGGCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030276.1 ENSRNOG00000051945 ENSRNOT00000086543 3 1 1 62 10 79210688 79210707 AATCAACTTTGACGTTTGCC 58 79208817 79210663 ATAGCGACAGTGCTCTACG 59 Novel DesignNoJunction Rattus norvegicus 81 AC109660.1 ENSRNOG00000052427 ENSRNOT00000079555 3 1 1 83 14 83082383 83083599 AGACCAAAGCCACTAAGCT 59 83083645 83083664 AGAGTTGGAGAAGAGCAGAG 59 Novel Rattus norvegicus 81 AABR07030450.1 ENSRNOG00000055695 ENSRNOT00000077366 1 1 1 97 10 87041798 87045812 CTGTGACATAGGAGCCCAC 60 87045873 87045891 TTTACCTGTGGTCGACCAG 59 Novel Rattus norvegicus 81 AABR07015994.1 ENSRNOG00000051567 ENSRNOT00000079143 1 1 1 80 14 89947708 89947726 GTGCCAATCACTATGAGCC 59 89898024 89947665 GGATTGACTTGTCTGTCTCC 58 Novel Rattus norvegicus 81 AABR07048321.2 ENSRNOG00000061187 ENSRNOT00000080587 3 1 1 81 5 72995671 72995690 TATGGGTCTGGAAATCAGGG 59 72995835 72995853 CCCAGGTTGGTAGCTTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07016558.2 ENSRNOG00000055797 ENSRNOT00000087831 2 1 1 118 14 103712519 103712537 TACATTATCGCTGAGGCCC 59 103712817 103712839 CCTCTCACAATTTCTCTTCACAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030566.1 ENSRNOG00000051740 ENSRNOT00000081453,ENSRNOT00000089480 1 2 2 94 10 93159183 93159763 CTCTCCAAGGTGGTAAAGTC 58 93159818 93159838 CTTCAGATCTTGAAGTTCCGT 58 Novel Rattus norvegicus 81 AABR07061453.1 ENSRNOG00000052345 ENSRNOT00000086966 1 1 1 80 4 125607138 125607160 GATAGTAACTAGAGCTGGAGTGG 60 125605239 125607098 GGCAAGCTTCTTACTCGTG 59 Novel Rattus norvegicus 81 AABR07016621.1 ENSRNOG00000056139 ENSRNOT00000077722 2 1 1 81 14 107263331 107264529 AGGATGCCTACTCAAGATCC 59 107264573 107264591 ATAGCTGGGTAGAGATGGC 58 Novel Rattus norvegicus 81 AABR07000968.2 ENSRNOG00000061372 ENSRNOT00000083825 2 1 1 91 1 30196312 30196999 GTGAAATTTGATGCCAATGGTG 59 30197050 30197069 TTTGCATTGCTTCTTCAGCA 59 Novel Rattus norvegicus 81 AABR07030593.1 ENSRNOG00000058343 ENSRNOT00000082824 3 1 1 113 10 95145648 95145666 TGTCTTCCTCGCTTCTACC 59 95136047 95136066 TATCATGAATTTGGCACGCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07016731.2 ENSRNOG00000060804 ENSRNOT00000080552 1 1 1 64 14 112997204 112997224 GTCTTCACCTACTAGGAAGGA 58 112969560 112997180 ACCCATTGTAACATGACATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07061902.2 ENSRNOG00000054613 ENSRNOT00000081622 2 1 1 78 4 151985851 151985869 GAGTGCCTTCGGTCTACAG 60 151982212 151982230 AGTGACCAACCATTCTGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07061902.2 ENSRNOG00000054613 ENSRNOT00000081622 3 1 1 79 4 151985851 151985869 GAGTGCCTTCGGTCTACAG 60 151982211 151982230 GAGTGACCAACCATTCTGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07016919.1 ENSRNOG00000054585 ENSRNOT00000077506 2 1 1 81 15 5048666 5049423 AGGAGGTCAAAGTTTGATCAG 58 5048605 5048624 TCTCCAAACGCTTCATTCTC 58 Novel Rattus norvegicus 81 AABR07016947.2 ENSRNOG00000061796 ENSRNOT00000086017 1 1 1 83 15 5374939 5374958 GCGTTCAAAGGAAGATTCCT 59 5369437 5374893 TTCTCTGCTGCAATTGCAG 59 Novel Rattus norvegicus 81 AABR07049288.1 ENSRNOG00000054667 ENSRNOT00000087340 2 1 1 124 5 114037379 114037397 GTTTCCATTGCTTCCGGAC 60 114114160 114114179 CCACTTCTTTGGTCTCTGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07017048.1 ENSRNOG00000053848 ENSRNOT00000081917 2 1 1 95 15 8062151 8067327 CAACGGTAGTGAACGTCAC 59 8067386 8067404 CATCCTCTGAGCTCTCCTG 59 Novel Rattus norvegicus 81 AC118434.3 ENSRNOG00000055871 ENSRNOT00000081013 2 1 1 78 10 102765112 102766382 ACTGTGAGACCAAAGGGTG 60 102766421 102766442 GAAATCTAAGCAGCAAGTAGCA 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07049389.1 ENSRNOG00000054826 ENSRNOT00000091586 3 1 1 61 5 120330034 120330053 ATTAGATCGAAGCTCCCAGG 59 120325123 120325141 GTGTTCTTCCTCTGTCCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07049474.1 ENSRNOG00000051764 ENSRNOT00000085186 2 1 1 104 5 122828865 122829142 TAAGAGAAGTGCTGCAGCT 59 122829210 122829228 TTCAAGTGCACTGTTCAGG 58 Novel Rattus norvegicus 81 AABR07049491.1 ENSRNOG00000055591 ENSRNOT00000086229 1 1 1 60 5 123663586 123667080 GGTCTTATTATTCCTTGATGGTGG 59 123663549 123663568 ACCAAGAGCTCCTCTATGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049503.1 ENSRNOG00000059476 ENSRNOT00000087040 1 1 1 80 5 124772451 124772472 CAAGCTGACTGGAAACTAACAC 60 124771040 124772411 ATGCTACAGTCATCTCACCC 59 Novel Rattus norvegicus 81 AABR07049508.1 ENSRNOG00000058843 ENSRNOT00000087485 1 1 1 80 5 124924698 124928629 ACAGAAACCCAAGTTTGATCC 59 124924638 124924656 TCAGCAAAGGCATCTTCTG 58 Novel Rattus norvegicus 81 AABR07017208.1 ENSRNOG00000055393 ENSRNOT00000083766 3 1 1 63 15 17954184 17954202 GAACTATGGCTGGCATGTG 59 17951576 17951594 AATTCTGGCATGAGTTGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07001210.1 ENSRNOG00000057057 ENSRNOT00000086246 3 1 3 117 1 38842055 38842074 GAAACTCAGCAAGAAGCCAG 60 38836991 38837009 CATACTTGGTCCTGGTGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07045680.1 ENSRNOG00000056040 ENSRNOT00000085825,ENSRNOT00000085220,ENSRNOT00000082897 1 3 3 82 20 56198702 56199212 TGGTTATGCAAATCAGAACCTG 59 56199255 56199273 CTCCAACCTCTTCCAGCTC 60 Novel Rattus norvegicus 81 AABR07062404.4 ENSRNOG00000061000 ENSRNOT00000078565 1 1 1 82 4 175178066 175201219 ACATTGTCGAACAGATCCG 58 175178002 175178020 CTTGGATGCCAGTTCTTGG 59 Novel Rattus norvegicus 81 AABR07049682.1 ENSRNOG00000060658 ENSRNOT00000091707 3 1 1 61 5 132777765 132777785 AACATCAAGCTCATGTCACTG 59 132777804 132791315 GCTTCACCTCTAGGTAAATATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062502.1 ENSRNOG00000060730 ENSRNOT00000089565 3 1 1 83 4 180142418 180150424 GCCAGTTTGTATCAAGTTCTC 57 180142355 180142373 AGGAGTTAACAAGCCTCAC 57 Novel Rattus norvegicus 81 AABR07031590.1 ENSRNOG00000059828 ENSRNOT00000089678 3 1 1 119 18 21163972 21167137 CAATGTGTCACCAGGAGTG 59 21167217 21167238 GCGTTGACATAAATGTTGACAG 59 Novel Rattus norvegicus 81 AABR07001493.1 ENSRNOG00000058258 ENSRNOT00000090336,ENSRNOT00000080468 3 2 3 90 1 47513247 47513265 CACTTCATCCGCATTACCC 59 47513319 47513703 TTCTTCTGAACGTGGACCC 60 Novel Rattus norvegicus 81 AABR07017814.1 ENSRNOG00000058542 ENSRNOT00000089808 3 1 1 80 15 31308672 31308816 GATACATTATTTCCTGGGAGGT 58 31308855 31308875 GAGTCTCCTTCAAAGACAGTG 58 Novel Rattus norvegicus 81 AABR07031740.1 ENSRNOG00000057082 ENSRNOT00000089581 1 1 1 69 18 31305840 31305858 GTCTGAAGAGACCGCAGAG 60 31296204 31296222 TGGTCTTCTGTTCCCTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AC115371.3 ENSRNOG00000054637 ENSRNOT00000077945 2 1 1 98 15 33503027 33504937 AACAATTCTGGTCAGAGGGA 59 33508523 33508541 TCCCATCTGTCTGTGTTGG 59 Novel Rattus norvegicus 81 AABR07001619.1 ENSRNOG00000053004 ENSRNOT00000088831 1 1 1 104 1 54297911 54300406 CCTGGAAAGTTCATCCACAG 59 54300473 54300491 TCAGTGTCCACTAGCACAG 59 Novel Rattus norvegicus 81 AABR07001662.1 ENSRNOG00000054056 ENSRNOT00000092209 1 1 1 80 1 54882841 54883328 CTTTCTCAGGAAAGGGCAG 58 54882779 54882797 GAGGATGCCTTGATTTGCA 59 Novel Rattus norvegicus 81 AABR07018115.4 ENSRNOG00000060223 ENSRNOT00000084187 1 1 1 74 15 40480838 40481467 CTTCAATTCCTTCTGCTCGT 58 40481504 40481522 TGTCTTCCATGTCACTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032123.1 ENSRNOG00000057282 ENSRNOT00000088498 2 1 1 80 18 47924647 47924666 CAAGTCAGCAGAGACTTTGG 59 47923388 47924607 GGAGTTCTTCTCCTTTACTCTG 58 Novel Rattus norvegicus 81 AABR07050134.1 ENSRNOG00000057126 ENSRNOT00000087947 2 1 1 63 5 153015118 153015137 AAATCGACATCTCCTGTGTC 58 153014606 153014624 CAGACCTCACCAAATTCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001799.1 ENSRNOG00000052286 ENSRNOT00000084574 1 1 1 80 1 57999553 58094539 GAGATTGAGGCTTAAAGAATCCC 59 58094578 58094597 TTGGCACTTGTCACTTTCTG 59 Novel Rattus norvegicus 81 AC118094.1 ENSRNOG00000058154 ENSRNOT00000087125 1 1 1 80 5 157135474 157135492 GTAAACGGATGCATGATGC 58 157135534 157136077 TTCTTGGAGCTTCCATTTCTC 58 Novel Rattus norvegicus 81 AABR07050274.1 ENSRNOG00000053597 ENSRNOT00000086353 2 1 1 101 5 158973648 158973667 GTGTTCTGTTACAAGCTCCC 59 158971330 158971348 GAACAGAACAGGCCAAACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032261.4 ENSRNOG00000056368 ENSRNOT00000087269 1 1 1 80 18 57522019 57533634 CGATAAGTACTAACAGAGACCC 58 57521960 57521978 AAGTCCCACGTGTAAACTG 58 Novel Rattus norvegicus 81 AABR07032261.4 ENSRNOG00000056368 ENSRNOT00000087269 2 1 1 81 18 57522020 57533635 CCGATAAGTACTAACAGAGACC 58 57521960 57521978 AAGTCCCACGTGTAAACTG 58 Novel Rattus norvegicus 81 AABR07050415.1 ENSRNOG00000055071 ENSRNOT00000078178 3 1 1 80 5 164240323 164240341 CCTTAAGCTGCAGTTGCTG 60 164235716 164240281 CAAATATCATGGGTTCTGGCA 59 Novel Rattus norvegicus 81 AABR07032422.1 ENSRNOG00000055882 ENSRNOT00000077969 1 1 1 60 18 64792693 64794070 ACTGGTCCTTGAATGCCTC 60 64792651 64792672 AAGGAGAAGCAGTTAGAATGTC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07050648.1 ENSRNOG00000059071 ENSRNOT00000089887 3 1 1 69 5 172176793 172176811 ACACAGTGAAGATGGAGCC 60 172176021 172176040 TAGAGCCATTGGTGGTACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07050652.1 ENSRNOG00000057101 ENSRNOT00000091594 3 1 1 80 5 172775754 172775775 GTAGTGTGCTGTCAATTCTCAG 59 172774183 172775715 CCAAACACAGATTCCTACAGG 59 Novel Rattus norvegicus 81 AABR07063746.1 ENSRNOG00000054844 ENSRNOT00000081221 1 1 1 80 6 45649320 45649886 TTCATCTGCTCCAAATCTACAC 59 45649927 45649945 GGTGCTCTTGACTTCTGAG 58 Novel Rattus norvegicus 81 AABR07032496.1 ENSRNOG00000057780 ENSRNOT00000079226 1 1 2 80 18 68552207 68679752 AGAAGACCAAGGAGGACAC 59 68552145 68552165 GGTAAGATCTGCTAGGGTGAG 60 Novel Rattus norvegicus 81 AABR07018837.1 ENSRNOG00000059235 ENSRNOT00000088967 3 1 1 82 15 75319064 75331265 AGGAATAAACGGTTACATGAGG 58 75331305 75331326 TAACTGGAAATGTAGTTCCTGG 58 Novel Rattus norvegicus 81 AABR07063811.1 ENSRNOG00000053737 ENSRNOT00000082540 3 1 1 80 6 50354898 50354918 TTTCAGATGAAGACTTGCTGC 59 50287729 50354857 AACAGTTCTGAGACCCTGTC 59 Novel Rattus norvegicus 81 AABR07019020.1 ENSRNOG00000061933 ENSRNOT00000082456 1 1 1 61 15 84004971 84004991 CCATCTTGCCTCTAAGTTCAG 59 84005013 84009871 GGAGCAATGCAAACTTTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002868.2 ENSRNOG00000057222 ENSRNOT00000080831 1 1 1 80 1 87560473 87560492 CTTCTCCAGGTCATGATCCT 59 87560532 87562814 GAACATCACCATACTATGAGCC 59 Novel Rattus norvegicus 81 AABR07064011.2 ENSRNOG00000051862 ENSRNOT00000079507 1 1 1 80 6 60188017 60188037 AAGTGGAAGTCTCTGTGACTG 60 60186632 60187975 GAGGTGTCTCTGCTACCAG 59 Novel Rattus norvegicus 81 AABR07051332.1 ENSRNOG00000053371 ENSRNOT00000090398 1 1 1 130 3 4988254 4988272 TATGTGCAGCTCAACATGC 59 4988613 4988631 TTCAGAGACAGCACTGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032747.1 ENSRNOG00000058730 ENSRNOT00000077102 1 1 1 110 18 78944655 78944673 TACAAGATACACCCAGGCA 58 78941247 78944581 GAGAAAGGTAACCGTTCCC 58 Novel Rattus norvegicus 81 AABR07064373.1 ENSRNOG00000059292 ENSRNOT00000088398 3 1 1 81 6 77394078 77394098 ATCAGAGATCTGATAAGTGCC 57 77378730 77394036 GATCCCAGAGCAGTATTCAG 58 Novel Rattus norvegicus 81 AABR07002969.1 ENSRNOG00000052945 ENSRNOT00000077404 1 1 1 80 1 90832058 90832076 GACACTGGAAAGTCAACCC 58 90832118 90848614 CTCCTTGGAATGGATCTTTCC 59 Novel Rattus norvegicus 81 AABR07019387.2 ENSRNOG00000058656 ENSRNOT00000078015 2 1 1 83 15 103524432 103533407 ATACACAAAGATTACGGCGG 59 103533452 103533471 AATTAGTCTCTGGTGTGCTG 58 Novel Rattus norvegicus 81 AABR07064631.1 ENSRNOG00000052186 ENSRNOT00000083522 3 1 1 60 6 87874932 87874950 AATGGCAACTTCATCTCCG 58 87871431 87871452 ATTAGAAGCTTGAGATCACAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051592.1 ENSRNOG00000052953 ENSRNOT00000081264 2 1 1 80 3 17648872 17649009 TGCTGTGGATAACAGATGGA 59 17649052 17649070 CAGTTTCTCCCAGAGATGC 58 Novel Rattus norvegicus 81 AABR07051592.2 ENSRNOG00000054125 ENSRNOT00000089977 1 1 1 80 3 17667339 17667481 GATAACAGATGGCATATGCGAC 60 17667519 17667540 ATGGAGATAGTTTCTCCCAGAG 59 Novel Rattus norvegicus 81 AABR07032851.1 ENSRNOG00000051901 ENSRNOT00000082803 1 1 1 62 18 85814357 85816847 GTACTATACATATGTACCTGGGC 58 85814317 85814335 TTCTTCTTGAAGGTGTGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051716.2 ENSRNOG00000060987 ENSRNOT00000083888 2 1 1 81 3 20015188 20015608 TTGTGGATTCCTGCTTCCA 59 20015653 20015671 AGGCTTGATTTCCAAGGCT 60 Novel Rattus norvegicus 81 AABR07065042.1 ENSRNOG00000054814 ENSRNOT00000084962 2 1 1 80 6 105316307 105317327 GAGGTTGGAGACAGTTTCAG 58 105317369 105317388 AAAGACGTAAGGATCAGTGG 57 Novel Rattus norvegicus 81 AABR07051879.1 ENSRNOG00000058335 ENSRNOT00000078782 3 1 1 60 3 25350865 25350885 GTGTTTCATCAAGGTTCTGGT 59 25335866 25350844 TTCTCATCAGAACCATCAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051882.2 ENSRNOG00000060195 ENSRNOT00000086466 1 1 1 87 3 25414326 25414491 CAGATGAACTTAACTGTGACAC 57 25414260 25414278 CTGAGGTTTACTGGGATGC 58 Novel Rattus norvegicus 81 AC120807.1 ENSRNOG00000053946 ENSRNOT00000082025 2 1 1 134 1 102087257 102087275 GAAATGTGGAAGACGGAGC 59 102087373 102088599 TCCAATTCCAGTCCACCTG 59 Novel Rattus norvegicus 81 AABR07020744.1 ENSRNOG00000060402 ENSRNOT00000087283 3 1 1 83 13 38191284 38206387 AGTCTCAGAAAGACAGAACCC 60 38191221 38191244 CTGACCTTTAGTTTCAACTAGCAG 60 Novel Rattus norvegicus 81 AABR07065091.1 ENSRNOG00000057609 ENSRNOT00000088059 3 1 1 189 6 109312677 109312695 AAGGTTAGGAAGGCTCCTC 58 109314749 109314767 CTTCTCCGAGTGAGCTGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07033666.1 ENSRNOG00000055823 ENSRNOT00000085292 1 1 1 107 11 34313560 34313578 TTCGAGGCTATGGAACTGG 59 34310346 34310368 GGCTGAGCATATTCTAGATACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07020987.1 ENSRNOG00000059225 ENSRNOT00000091737 1 1 1 80 13 50802378 50802396 TGTGCAGAGTTCTTGGAGG 60 50802440 50803841 TTTGTGCAGGTTGTCAGTG 59 Novel Rattus norvegicus 81 AABR07021018.2 ENSRNOG00000059794 ENSRNOT00000078481 1 1 1 80 13 53649158 53649176 GCAGGCGACAAATACAGAG 59 53649218 53651985 GCTTTCTGCAGGTAAACAGAG 60 Novel Rattus norvegicus 81 AABR07021221.1 ENSRNOG00000052921 ENSRNOT00000086824 1 1 1 63 13 61423319 61423337 GAAACAAACATCGAGGCCA 59 61422836 61422859 GTAGGAGAAGACTTAGTCTATTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07003392.1 ENSRNOG00000061672 ENSRNOT00000084001 1 1 1 60 1 108641550 108641571 AACCCACCAAATTCACTTTGAG 60 108617886 108617905 GCAGGATACTCTTGTGATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07003418.1 ENSRNOG00000051394 ENSRNOT00000091509 3 1 1 84 1 109462469 109462488 TCTTCTGAGCTCCACATCTG 59 109462531 109463698 CAGGGAAATCTTCATACACAGTG 60 Novel Rattus norvegicus 81 AC141136.1 ENSRNOG00000052394 ENSRNOT00000083923 2 1 1 81 11 43028696 43029958 CACACTCACCAGGAATCTG 58 43030003 43030021 ATCATGCTCCAATTCTGGG 58 Novel Rattus norvegicus 81 AABR07021465.2 ENSRNOG00000058710 ENSRNOT00000083523 3 1 1 81 13 73868446 73868465 ACATTTGTAGATCAGGTGGC 58 73867931 73868403 GAGCGGAAGTATCAACATGG 59 Novel Rattus norvegicus 81 AABR07065349.1 ENSRNOG00000054787 ENSRNOT00000083679 3 1 1 84 6 123153246 123153610 GTTGAAATGTGTTTCCTCCAG 58 123153182 123153201 GAGATTCGTTCTGAGGTGAG 58 Novel Rattus norvegicus 81 AABR07003786.1 ENSRNOG00000051576 ENSRNOT00000092146 3 1 1 89 1 118322697 118324430 GGCAATTAATCTACCGTGGT 58 118322627 118322646 TATAGTTCAGTCGTAGGGCA 58 Novel Rattus norvegicus 81 AABR07052568.1 ENSRNOG00000051523 ENSRNOT00000091684 1 1 1 74 3 61967560 61967578 CTCACACTGAAGGCTTTGG 59 61967848 61967868 GCACTGATATGTCAAATGACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021636.1 ENSRNOG00000056222 ENSRNOT00000088180 3 1 1 80 13 83138214 83138234 TGGAAACACATTTCACTCTCC 59 83130012 83138172 AAGCCTGAAGTTCCAAGTC 58 Novel Rattus norvegicus 81 AABR07052598.1 ENSRNOG00000055544 ENSRNOT00000081155 3 1 1 82 3 65028839 65028860 CGTAATGAATCGGTTGAATGCT 60 65027327 65028797 CCAGACGGTCTCTTGTACTG 60 Novel Rattus norvegicus 81 AABR07004090.1 ENSRNOG00000056061 ENSRNOT00000082014 3 1 1 101 1 124300109 124311484 CATCCTGTTTCTAATGGTACTTCTC 59 124300032 124300051 AGATGTTTCCATGTGCTTGC 60 Novel Rattus norvegicus 81 AABR07052608.1 ENSRNOG00000051580 ENSRNOT00000089321 3 1 1 107 3 65954407 65954425 TCTCTGTCCAGTCAGTTGG 59 65954496 65992061 AGAATCACCACTAGCTGCT 58 Novel Rattus norvegicus 81 AABR07004136.1 ENSRNOG00000061645 ENSRNOT00000082877 2 1 1 80 1 126694890 126694908 GTCCACCTTGGATCTTCGA 59 126692045 126694846 CAGATTCAACCTGCTTGCC 60 Novel Rattus norvegicus 81 AABR07021888.1 ENSRNOG00000061007 ENSRNOT00000082330 3 1 1 80 13 96756437 96756456 TGCAACTCATTCACCATCTG 59 96756496 96757889 GTGATTCAGCAAAGACATACTG 58 Novel Rattus norvegicus 81 AABR07052750.2 ENSRNOG00000060591 ENSRNOT00000080439 1 1 1 80 3 71947944 71950950 AGTGAGCTAAGAGGTCCTG 58 71950992 71951012 TACACCTTCTCTTTGAACTGG 58 Novel Rattus norvegicus 81 AABR07004221.1 ENSRNOG00000051696 ENSRNOT00000086793 3 1 1 104 1 130652246 130652265 AATATCGTGGTTGCTCTCCA 59 130651257 130651275 AAAGTCTGGCTACAAAGCC 58 Novel DesignNoJunction Rattus norvegicus 81 AC110403.1 ENSRNOG00000059701 ENSRNOT00000088915 1 1 1 110 3 72845452 72845471 CAGAGATCCAAGGTTCTGTG 58 72844584 72844605 ACTTTAGACACAGAAGTGAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021998.1 ENSRNOG00000059555 ENSRNOT00000089751 3 1 2 80 13 101998643 101999236 TTCAGTGAGGTGTCAGTCAG 59 101999277 101999297 ATCAGGAGTAGACAAGAAGCC 59 Novel Rattus norvegicus 81 AABR07052894.1 ENSRNOG00000060152 ENSRNOT00000081781 2 1 1 60 3 81753761 81754094 AATGAAAGGAGAAGACAGCG 58 81753720 81753738 TGCACCTCAAGGATGAGTG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07035008.1 ENSRNOG00000053067 ENSRNOT00000081463,ENSRNOT00000085147 1 2 3 140 12 3213530 3221988 TGTCATCTTCCTTCAGATTCAC 58 3223424 3223445 GTCCTTTCTCTGCAATTATGGA 59 Novel Rattus norvegicus 81 AABR07035008.1 ENSRNOG00000053067 ENSRNOT00000081463,ENSRNOT00000085147 2 2 3 141 12 3213530 3221988 TGTCATCTTCCTTCAGATTCAC 58 3223425 3223446 TGTCCTTTCTCTGCAATTATGG 59 Novel Rattus norvegicus 81 AABR07022072.2 ENSRNOG00000058959 ENSRNOT00000087282 3 1 1 61 13 105852680 105852699 CTCACAAGTCTGTCTCCTGG 60 105847960 105847978 TCTAAAGGGCTCCAAACGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07024444.1 ENSRNOG00000051437 ENSRNOT00000091395 1 1 1 80 16 328512 332793 CCTGGCCAGATTCAAAGGA 60 332836 332855 CAAATGTAACCATGGCCCTG 60 Novel Rattus norvegicus 81 AABR07024491.1 ENSRNOG00000055392 ENSRNOT00000083207 3 1 1 81 16 1455310 1456802 TTCCTTGCCTACATAGCCTC 59 1455248 1455266 AATGCAGCTACTCCTTGCA 60 Novel Rattus norvegicus 81 AABR07035309.1 ENSRNOG00000054511 ENSRNOT00000082137 3 1 2 95 12 10130537 10130555 GTGTGGCAGAGAACTTGTG 59 10130278 10130478 CTTCTGGCAGAATCTGCAC 59 Novel Rattus norvegicus 81 AABR07066436.1 ENSRNOG00000060948 ENSRNOT00000092074 2 1 1 81 9 8864580 8864599 CTATGTGGAGGCAAAGAGGT 60 8857669 8864536 TTCAACATCCAGCTGTTGC 59 Novel Rattus norvegicus 81 AABR07004482.2 ENSRNOG00000059905 ENSRNOT00000083794 2 1 1 95 1 144895956 144895975 ATAAATCCAGTCGCTGAGTG 58 144892230 144895900 AGAACAGACCTGAAATGTCTC 58 Novel Rattus norvegicus 81 AABR07066470.1 ENSRNOG00000054362 ENSRNOT00000087249 2 1 1 145 9 9087118 9087136 TCAGCAGGTTGGGTATGTG 60 9104432 9104450 CTCCTTGTGCCTATGTGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035758.1 ENSRNOG00000061122 ENSRNOT00000092035 1 1 2 164 12 21778244 21778262 CAACAGCCTTGCAGATGTG 60 21778561 21778700 AAGGGATTGGTGAAGGCTC 60 Novel Rattus norvegicus 81 AABR07035778.1 ENSRNOG00000054206 ENSRNOT00000079605 1 1 1 80 12 22294186 22294204 TTCTCAGGACATCCTGGAC 58 22294246 22294880 CACCACCATGAACTGTATCTG 59 Novel Rattus norvegicus 81 AABR07035780.4 ENSRNOG00000058550 ENSRNOT00000086931 2 1 1 61 12 22339005 22339023 AAATCTCAATGTGGCTGCA 58 22339048 22339404 ATCCAGTTCTTCCCTTCCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07004868.2 ENSRNOG00000057308 ENSRNOT00000082386 2 1 1 86 1 163459610 163459628 TCTTCTGAGGAGATGGCCT 60 163459678 163460810 TTGGAAGCTCTCCTGAGTG 59 Novel Rattus norvegicus 81 AABR07066870.1 ENSRNOG00000061014 ENSRNOT00000082099 3 1 1 102 9 20339528 20340805 TTGGATAACAAGATGCGGC 59 20332771 20332791 TCGGCTTGGTAACAATATCTG 58 Novel Rattus norvegicus 81 AABR07024951.1 ENSRNOG00000060620 ENSRNOT00000080347 1 1 1 88 16 22311703 22317817 AGTAACTATCCCAGAGTTGGG 59 22311635 22311653 TTTCATCTCCACCGTCCTG 59 Novel Rattus norvegicus 81 AABR07024951.1 ENSRNOG00000060620 ENSRNOT00000080347 2 1 1 89 16 22311703 22317817 AGTAACTATCCCAGAGTTGGG 59 22311634 22311652 CTTTCATCTCCACCGTCCT 59 Novel Rattus norvegicus 81 AABR07024955.2 ENSRNOG00000061399 ENSRNOT00000083625 3 1 1 110 16 22562844 22562862 CTCTTGCCAGCTTTCAAGG 59 22562009 22562774 GCAATATGGATCTCCTTCTTCTC 59 Novel Rattus norvegicus 81 AABR07035780.1 ENSRNOG00000056032 ENSRNOT00000089026 2 1 1 99 12 22375084 22375102 AAGGATCCTTTCAGTGCCA 59 22375164 22375276 CACTTCATAGTGCTGGAGAC 58 Novel Rattus norvegicus 81 AABR07025263.1 ENSRNOG00000055838 ENSRNOT00000080625 3 1 2 80 16 31172100 31172202 AAGGATCAGATCAGGTTCCTG 59 31171899 31171919 CCTGGCCCTATTTATCCTCTC 60 Novel Rattus norvegicus 81 AABR07067036.1 ENSRNOG00000059635 ENSRNOT00000078358 1 1 1 139 9 27326026 27326044 CATCCAGAGAAGCGGAGAG 60 27325784 27325802 CATCCTCTGACAGGTTGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07005508.1 ENSRNOG00000061369 ENSRNOT00000088187 1 1 1 89 1 183892305 183892323 GAAGTTGGATCACGTACCC 58 183885279 183892253 TATGCTTGTCTCACTAGGCA 59 Novel Rattus norvegicus 81 AABR07054126.1 ENSRNOG00000054946 ENSRNOT00000084175 2 1 3 108 3 142319193 142319211 AGATGGCTTTCCCAACTCC 60 142280708 142319124 TCAGGATAAACTTCAATGCCCT 60 Novel Rattus norvegicus 81 AABR07067404.2 ENSRNOG00000057258 ENSRNOT00000081049 1 1 1 80 9 43495572 43496041 TCTCTACATCTACTGTGTATCCTC 59 43496075 43496098 CACAGTAGATACTAAGAGGATCAC 58 Novel Rattus norvegicus 81 AABR07067456.1 ENSRNOG00000058462 ENSRNOT00000086954 2 1 1 122 9 46890409 46890428 GTAACTGAGAACTGCCAGAG 58 46890513 46891219 GAAGTTGACACAGCTTCCT 58 Novel Rattus norvegicus 81 AABR07036302.2 ENSRNOG00000060862 ENSRNOT00000089655 1 1 1 80 12 37055823 37055841 AGAGTGGCTTCTAGACAGC 59 37055884 37056833 ACATCTATCCCTGTCCATCC 58 Novel Rattus norvegicus 81 AABR07036304.1 ENSRNOG00000057802 ENSRNOT00000085196 1 1 1 67 12 37106468 37106486 TAGTCACTGAAGTTGCCTG 57 37117530 37117548 ATACTAACGTCCAGGCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054445.1 ENSRNOG00000054537 ENSRNOT00000089702 3 1 1 60 3 153935314 153935333 ACACGTAGACAGAGACAAGG 59 153934279 153934297 GATTGTTGCCACTTTGGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036391.1 ENSRNOG00000055489 ENSRNOT00000086158 1 1 1 80 12 41593979 41593998 AGATGAAATGCCTGTCTGGA 59 41594041 41594966 GCTCCAAAGAAGCTGTCTG 59 Novel Rattus norvegicus 81 AABR07026032.2 ENSRNOG00000057634 ENSRNOT00000090326 2 1 1 80 16 60082382 60083145 GACAGCATAGAGTATAACATACTGC 59 60082326 60082346 TTTCATTTGGAATCGACCTGG 59 Novel Rattus norvegicus 81 AABR07036406.2 ENSRNOG00000056161 ENSRNOT00000087400 1 1 1 88 12 42076152 42076170 TGGTCAGGTCTCTTCAGAG 58 42074576 42076103 CAACATGTCCTGATTGTAACTG 58 Novel Rattus norvegicus 81 AABR07054488.1 ENSRNOG00000059124 ENSRNOT00000082984 1 1 1 80 3 156453305 156453323 GTCTGGATGCTGAGAAGGG 60 156426589 156453263 GGGAAGGGTCATAGTACACTC 59 Novel Rattus norvegicus 81 AABR07054488.1 ENSRNOG00000059124 ENSRNOT00000082984 3 1 1 80 3 156426589 156453263 GAGTGTACTATGACCCTTCCC 59 156426529 156426548 GATGTGGAGGTAGGAACTGG 60 Novel Rattus norvegicus 81 AABR07026137.1 ENSRNOG00000054486 ENSRNOT00000087549 1 1 2 70 16 65178783 65178802 GGGAGAAGCAGTTTCAAGAC 59 65254108 65254126 ATCCTCAGACACTTGGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026197.1 ENSRNOG00000054467 ENSRNOT00000083218 1 1 1 113 16 67038465 67038486 CCGGTATTATAATGCCAATGGG 59 67037869 67038391 TTGAACTCTCGAAGCTGCT 59 Novel Rattus norvegicus 81 AC113785.1 ENSRNOG00000059361 ENSRNOT00000088569 3 1 1 80 16 69022586 69022604 AAGCCATTCCACTCAAGGA 59 69009856 69022543 AAGCCAGAAATCACCTAGCT 59 Novel Rattus norvegicus 81 AABR07054583.1 ENSRNOG00000057311 ENSRNOT00000085951 2 1 1 98 3 162251485 162254143 CTTCACTCACTTCAGAGGG 57 162254204 162254223 TTATTTGGTCCCACGATGAG 58 Novel Rattus norvegicus 81 AC095390.1 ENSRNOG00000052761 ENSRNOT00000077618 3 1 1 109 12 51760388 51822456 ATGAATTGACCCAGCAAGG 58 51760297 51760315 TCTTCATGTTCTTGCCAGC 59 Novel Rattus norvegicus 81 AABR07068035.1 ENSRNOG00000057294 ENSRNOT00000078904 1 1 1 100 9 78487468 78487486 AAGGCCCAATTCAAACCAG 59 78487550 78501517 CCACAGTACAGAGACCTGG 59 Novel Rattus norvegicus 81 AABR07054832.1 ENSRNOG00000051547 ENSRNOT00000084641 1 1 1 86 3 171081386 171082682 TCTTCCAGGAGAGGAGAGG 59 171081318 171081336 GAGACCAAGCTCAGATGGG 60 Novel Rattus norvegicus 81 AABR07054832.1 ENSRNOG00000051547 ENSRNOT00000084641 3 1 1 88 3 171081387 171082684 AGTCTTCCAGGAGAGGAGAG 60 171081318 171081336 GAGACCAAGCTCAGATGGG 60 Novel Rattus norvegicus 81 AABR07037698.1 ENSRNOG00000054904 ENSRNOT00000080867 1 1 1 82 X 28578642 28578660 ACCTCGAGATCATCTACCC 58 28578705 28582287 CCAACAATATGATCCTGCAC 57 Novel Rattus norvegicus 81 AABR07037708.1 ENSRNOG00000052695 ENSRNOT00000092116 1 1 1 80 X 28698808 28698827 ATCCTCCTGTCTCTACCTCC 60 28688919 28698771 CCTTCTTCGTCAAAGTATCTTAGAC 59 Novel Rattus norvegicus 81 AABR07068163.1 ENSRNOG00000054726 ENSRNOT00000087137 2 1 1 61 9 86775873 86775893 TCTGAAGTTACGAATGAGGGA 59 86775914 86781368 CTCTGATTGCTAAGCATGGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07037896.1 ENSRNOG00000058952 ENSRNOT00000081910 2 1 1 80 X 35154476 35154495 ACGTCTATGGCAATATGCAG 58 35151744 35154434 TGTCCTGAAGAAATTCTCGG 58 Novel Rattus norvegicus 81 AABR07054983.2 ENSRNOG00000060067 ENSRNOT00000081151,ENSRNOT00000088310 1 2 2 80 3 177390148 177390166 GACAAGCAGGAGAAGTGGA 59 177390209 177392115 TTTCCCTTCTTCCTCAGGTG 59 Novel Rattus norvegicus 81 AABR07054991.1 ENSRNOG00000060218 ENSRNOT00000086637 1 1 1 91 3 177457795 177457909 GGATGTGAAGTTTATCTTTCTCCTG 60 177457728 177457746 TCCTGTGTAAGGAGCACTG 59 Novel Rattus norvegicus 81 AABR07026519.1 ENSRNOG00000057746 ENSRNOT00000087361 1 1 1 61 16 80703766 80703784 CAGGAAGTGACCTCACAGG 60 80702528 80702546 CCACCTTATGTTGCAACCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07068198.3 ENSRNOG00000056997 ENSRNOT00000088218 3 1 1 60 9 89722445 89722466 TCCACAGTTGACTTTAATGTCG 59 89719312 89719330 GATGGAGGTAAGGAGTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07068198.2 ENSRNOG00000054702 ENSRNOT00000081485 1 1 1 95 9 89928370 89929096 TTGAAGACTTTGCTGCGAG 59 89929155 89929173 CTCTGTAACTGCCAAGTGC 59 Novel Rattus norvegicus 81 AC096938.1 ENSRNOG00000059836 ENSRNOT00000087316 2 1 1 68 16 82123529 82123547 CACACTAACCAACACGGAG 59 82120947 82120965 GTACAAGGTGAGGAAGCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07072528.3 ENSRNOG00000058489 ENSRNOT00000081861 2 1 1 89 16 82307785 82308710 TCTGTGAAGACAGCTCAGG 59 82307714 82307732 GAAGCCAGGAAACATGCAG 60 Novel Rattus norvegicus 81 AABR07038971.1 ENSRNOG00000053156 ENSRNOT00000080597 1 1 1 84 X 65111797 65111815 TTAACTTTCTGCTGCCCTG 58 65111594 65111612 GTTCAGGTGCCAATTGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072528.1 ENSRNOG00000056333 ENSRNOT00000077932 3 1 1 89 16 82357732 82357750 TCTGACTGGGTCTTGAAGC 59 82357799 82359111 CTGACTGGAATTCTTGTCTTCAG 60 Novel Rattus norvegicus 81 AABR07026557.2 ENSRNOG00000061488 ENSRNOT00000081647 3 1 1 132 16 83203352 83203370 TGTGCCACAGTTTGTTCTG 59 83198833 83203256 TGGAGAGGAGTTCTTTGCC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07039133.1 ENSRNOG00000055432 ENSRNOT00000085077 2 1 1 88 X 69033064 69033082 ATTCTGCAGGATCCGTTCC 60 68998563 69033013 TGGAAAGAGCTCCAATCCAG 60 Novel Rattus norvegicus 81 AABR07039139.2 ENSRNOG00000052595 ENSRNOT00000077149 2 1 1 99 X 69207717 69207736 GAATAACCATTGGTGGCTGG 59 69212239 69212257 CTCTTCTGGTGGGTTCTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07068308.1 ENSRNOG00000056453 ENSRNOT00000087447 3 1 1 60 9 97539927 97539946 TGATCTTCTGCAAGGTTCCA 59 97538730 97538751 TCACTGATCACTGGATTCTGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056425.1 ENSRNOG00000061877 ENSRNOT00000079296 3 1 1 122 7 25004527 25005161 ATCACAGGCCTCAAGACTG 59 25006359 25006378 AATATTTGGCTTGCCTAGCA 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07056464.1 ENSRNOG00000060280 ENSRNOT00000078205,ENSRNOT00000088976 3 2 2 85 7 26146117 26146450 GGAGACTATATTAGGCGTTATTTGC 60 26146056 26146075 ATACCTTCTGGTGCATTCCA 59 Novel Rattus norvegicus 81 AABR07042654.3 ENSRNOG00000060758 ENSRNOT00000079060 2 1 1 80 19 1572653 1572671 CTCCTGGGACAACTTAGCA 59 1572498 1572610 AACAGCGTGATAACTTTGGG 59 Novel Rattus norvegicus 81 AC139608.2 ENSRNOG00000054905 ENSRNOT00000082237 3 1 1 63 17 9422116 9427087 CATGTCTTCAGATGCGCAG 59 9422071 9422092 TTTCAAGTCAGGAATAAGCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056509.1 ENSRNOG00000054383 ENSRNOT00000085247 1 1 1 145 7 27589983 27590001 CGGGATCGACATCATTCTC 58 27591054 27591072 ACTGTTCTGCACTCTCCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07068799.1 ENSRNOG00000052844 ENSRNOT00000079914 1 1 1 80 9 119948081 119948894 AATTTGCCAGTGCCATATCAG 59 119948936 119948954 CCGTAGTTCCAGGATTCCA 59 Novel Rattus norvegicus 81 AC096370.1 ENSRNOG00000055937 ENSRNOT00000089366 3 1 1 106 1 259606776 259608220 GATCCGGAAGAGCTCTTCC 60 259608289 259608308 ATTGTGGTCTCAGACAGCTC 60 Novel Rattus norvegicus 81 AABR07027072.1 ENSRNOG00000053171 ENSRNOT00000091031 3 1 1 60 17 13057568 13069334 TTACTGAGCATGATGGAGC 57 13057526 13057544 ACTCGAGTATGTGGTCCTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07027155.1 ENSRNOG00000057010 ENSRNOT00000078364 2 1 1 80 17 16984314 16997700 CATTGAAACCCTGAGTACACG 59 16997742 16997760 TTCATGGTTTCGCAGTCTG 59 Novel Rattus norvegicus 81 AABR07056678.1 ENSRNOG00000059437 ENSRNOT00000088749 3 1 1 80 7 35699168 35699186 CCATCTATTCCTGTCACCG 57 35698150 35699125 TTGCTAGAACTTTCTGGTCC 58 Novel Rattus norvegicus 81 AABR07056791.1 ENSRNOG00000055691 ENSRNOT00000081059 1 1 1 120 7 41415435 41416601 TTGATCTTAGCACACCACCA 59 41415334 41415358 CGAAGTCTTTATTGTGATCCTTCTC 60 Novel Rattus norvegicus 81 AABR07069218.1 ENSRNOG00000052076 ENSRNOT00000081372 3 1 1 61 8 12794659 12822958 ATCACGGTCATCACAAGCT 59 12794616 12794639 GGTTGATACAGAGAATCCAAATGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07006911.1 ENSRNOG00000053954 ENSRNOT00000080845 3 1 1 129 1 270729799 270729817 AGAAGTACCTGGACAACGG 59 270712205 270712224 GTAGATTCTGCCAGGTTGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07043030.2 ENSRNOG00000058644 ENSRNOT00000087582 2 1 1 93 19 17930223 17930241 GTTAGTCTGAGAGGGCCAC 60 17930295 17939338 AGTCGTTTGTCTCTTTGAAACC 60 Novel Rattus norvegicus 81 AABR07056998.1 ENSRNOG00000052964 ENSRNOT00000083398 1 1 1 65 7 50639892 50639910 TAAAGGGCTTTCTCCCTCC 59 50639939 50640311 GATGCCACGATCATCTTGC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07069454.1 ENSRNOG00000059163 ENSRNOT00000079540 1 1 1 80 8 23178283 23179277 GGCAGAATCTTAAGCAACCA 59 23179319 23179338 GTCGTGGTCAAGAATTTGGT 59 Novel Rattus norvegicus 81 AABR07043035.1 ENSRNOG00000055856 ENSRNOT00000083730 3 1 1 80 19 18431558 18431658 ACAACATCATCTGCTCACAG 58 18431700 18431719 ACAGTTGACAGGAGGTATCG 59 Novel Rattus norvegicus 81 LOC102546383 ENSRNOG00000052557 ENSRNOT00000083644 3 1 1 80 17 27390105 27393482 GGATGGTGCTGTCTATTCC 58 27393523 27393544 AAGTTGTAGAGGACTAGAGGAC 59 Novel Rattus norvegicus 81 AABR07043098.2 ENSRNOG00000059743 ENSRNOT00000089051 2 1 1 106 19 20572452 20572470 CATGGCTAGCAGGATAGGG 59 20572537 20587611 GACAAGCAAGGAAATTGTTCTC 59 Novel Rattus norvegicus 81 AABR07043098.2 ENSRNOG00000059743 ENSRNOT00000089051 3 1 1 107 19 20572451 20572469 ACATGGCTAGCAGGATAGG 59 20572537 20587611 GACAAGCAAGGAAATTGTTCTC 59 Novel Rattus norvegicus 81 AABR07043100.1 ENSRNOG00000057051 ENSRNOT00000090089 2 1 1 85 19 20784100 20784118 GAACGAAGCTGGTGAAAGG 59 20774729 20784054 CATCTGGGAAATTTGCTTTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027394.2 ENSRNOG00000054220 ENSRNOT00000089190 1 1 1 80 17 28008575 28008703 TAGAAACACCCTCAGGTCAG 59 28008514 28008533 CCTTTCTGTCTGGGAAAGGA 59 Novel Rattus norvegicus 81 AABR07057235.1 ENSRNOG00000060586 ENSRNOT00000078923 1 1 1 79 7 62236168 62236949 CTTCCTTCCTCATGGACGG 60 62236992 62237010 CTTCAGTCTTGAGCTCCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AC110709.2 ENSRNOG00000056269 ENSRNOT00000081549 2 1 1 82 1 274377426 274381312 GTCTGGAAGGTCTGGACAC 60 274381356 274381376 TGTCCTCTGGTCTTTAAGTGG 60 Novel Rattus norvegicus 81 AABR07069728.1 ENSRNOG00000058251 ENSRNOT00000090767 3 1 1 80 8 38128782 38128803 ATTGGGAATCATTTCAGCTCTC 59 38128843 38128992 AATGTAGTGGACCCTCTGAG 59 Novel Rattus norvegicus 81 AABR07069733.1 ENSRNOG00000058081 ENSRNOT00000082354 2 1 1 99 8 38422276 38422295 AGACTCCAGTGAGATTTGTC 57 38421821 38422217 CTGAAATGATAGTTCTGTGAGC 57 Novel Rattus norvegicus 81 AABR07027569.2 ENSRNOG00000059845 ENSRNOT00000087970 3 1 1 61 17 37332686 37337128 GCAGAAGTTGGACTCAGAG 58 37337153 37337171 TCCTCAGTGGAAGACTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057436.1 ENSRNOG00000055483 ENSRNOT00000086346 1 1 1 83 7 71103443 71104220 GCATCATGAAAGTCCAGGG 59 71104267 71104285 TCAACCCTGACTGTATGGG 59 Novel Rattus norvegicus 81 AC098190.1 ENSRNOG00000057169 ENSRNOT00000087051 2 1 1 70 2 5881487 5881506 GGTTGAGCCAATGAGATCTG 59 5879355 5879374 GGCTGCTCTGGAATATTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057611.1 ENSRNOG00000058911 ENSRNOT00000082925 3 1 1 84 7 80165131 80165150 CCTTTATTGCCTGAGAACCT 58 80164751 80165084 TGCATATTTCCCTTGGCTC 58 Novel Rattus norvegicus 81 AC103227.1 ENSRNOG00000056707 ENSRNOT00000085541 2 1 1 84 2 11195419 11195437 TAACCAAGCCAGAAGACTG 57 11194531 11195374 GTAAATAACCTCTGAAAGCAGC 58 Novel Rattus norvegicus 81 AABR07057628.1 ENSRNOG00000054567 ENSRNOT00000079370 3 1 1 89 7 81701446 81723512 CTATCCAGATTGTCTGAGAATTCC 59 81701380 81701398 GAAACCAGAGTCTCTGTGC 58 Novel Rattus norvegicus 81 AABR07057633.1 ENSRNOG00000053925 ENSRNOT00000080336 3 1 1 81 7 81884325 81884346 GAAGAACTCAGACATACAAGCC 59 81884384 81899746 CAAGAGTTGCTTCTTCAGAAGAG 60 Novel Rattus norvegicus 81 AABR07007409.1 ENSRNOG00000058632 ENSRNOT00000084327 1 1 1 71 2 13055058 13055082 GTGTGAATAGAATCAGAAGGTTCTC 60 13054484 13054502 ATCACCGTTCTTTGAAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07043772.1 ENSRNOG00000061467 ENSRNOT00000090255 2 1 2 80 19 39502520 39502538 TTCATCTCATTGCTCAGCG 58 39502577 39536202 GAGAAGATCATAGACAGATTCTCG 59 Novel Rattus norvegicus 81 AABR07070122.1 ENSRNOG00000061391 ENSRNOT00000080725 3 1 1 82 8 53558569 53560971 AGCATTAGGCACTACAGGAG 59 53561016 53561034 AGTCTGGCCTTCAATTCGT 59 Novel Rattus norvegicus 81 AABR07070131.1 ENSRNOG00000053537 ENSRNOT00000083973 3 1 1 60 8 53831988 53832006 AGATCAGTGTTCCATGCCT 59 53832030 53837374 TCTCTGAAGTTGAGAGGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07029391.1 ENSRNOG00000058347 ENSRNOT00000083201 3 1 1 74 10 26258479 26261367 GTGTGCAGAGAAAGTTTCTC 57 26261401 26261422 ATATTAGTGGAGAGCTCATGAC 57 Novel DesignRelaxed Rattus norvegicus 81 AABR07070161.4 ENSRNOG00000055224 ENSRNOT00000080908 3 1 1 82 8 55530126 55530258 ATATCCAGCTTAAGGCCTCG 60 55530063 55530081 AGATGTGGTGACTGTTCCA 59 Novel Rattus norvegicus 81 AABR07058174.1 ENSRNOG00000054723 ENSRNOT00000084323 1 1 1 115 7 103622203 103622908 TAACGGATTCATCCGGAGC 60 103622984 103623005 CAGTCAACCCTCATTTCTTCTG 59 Novel Rattus norvegicus 81 AABR07070161.7 ENSRNOG00000060683 ENSRNOT00000081043 3 1 1 60 8 55539915 55539933 AGGTCCTCAGAGTTGAAGG 58 55538888 55538907 CATTCGAGGTCTACCTGGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07029490.1 ENSRNOG00000052198 ENSRNOT00000089508 1 1 1 80 10 30626163 30627597 GGAGCTGTAAAGGTTGAATCC 59 30626103 30626124 TCTATCCAAGCATTAGAACTGC 58 Novel Rattus norvegicus 81 AABR07041709.1 ENSRNOG00000058115 ENSRNOT00000082122 3 1 2 79 X 137478042 137478060 GAAATTGGTGATGGGCCTG 59 137473721 137473739 CTTGTCTTCAGTTCTCCCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07042135.1 ENSRNOG00000054534 ENSRNOT00000091535 2 1 2 60 X 149274231 149274251 AGAAAGTGAAAGAAGTGCTGG 59 149274270 149279793 TAATTTACCGTTGGGTTCTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058412.1 ENSRNOG00000054589 ENSRNOT00000082481 2 1 1 71 7 115117440 115117459 CTAAGACCACCTCTCCTCTC 58 115116798 115117406 CTGACCCACAGGAACAGAG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07029617.1 ENSRNOG00000059529 ENSRNOT00000091350 1 1 1 80 10 41145701 41146328 CGTTTCCTATCTCAAGGTGG 58 41146371 41146389 AAGGTATGACAAGGAACGC 58 Novel Rattus norvegicus 81 AABR07042440.4 ENSRNOG00000061495 ENSRNOT00000084415 1 1 1 111 X 155803825 155803843 TCTAGAAGCAGTAGGGTGG 58 155803918 155805014 TTGGACAGAAAGGTCATGC 58 Novel Rattus norvegicus 81 AABR07042440.4 ENSRNOG00000061495 ENSRNOT00000084415 2 1 1 111 X 155803826 155803844 CTAGAAGCAGTAGGGTGGC 60 155803918 155805015 GTTGGACAGAAAGGTCATGC 60 Novel Rattus norvegicus 81 AABR07058554.1 ENSRNOG00000054112 ENSRNOT00000090656 3 1 1 62 7 124624945 124624965 CTGGGATCATCTGATATCTGG 57 124626608 124626626 GATCTCTGAGCCTCTGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07070335.1 ENSRNOG00000053878 ENSRNOT00000085846 3 1 1 92 8 66066062 66066083 CTGCTTCCTTATCTGCTAATGG 59 66064556 66064577 GATGCCAAGCCAAATTATATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027979.1 ENSRNOG00000053341 ENSRNOT00000082797 3 1 1 88 17 51949040 51980921 TGTCTTAGAGGCTTCAAACGT 60 51980970 51980989 GAAACTTCCACAACTGCTCC 60 Novel Rattus norvegicus 81 AABR07028036.1 ENSRNOG00000056249 ENSRNOT00000078898 1 1 1 94 17 54180928 54180946 ATATGGAACTGCTGGGTGG 60 54178574 54180876 CTAGAAGTATCTGTCAAGTGATGTC 59 Novel Rattus norvegicus 81 AABR07007863.1 ENSRNOG00000052924 ENSRNOT00000082365 3 1 1 66 2 31870512 31870530 GATGAATGACCAGGAACGA 57 31845301 31845319 TCAAGAACTTGCGTCTTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07007874.1 ENSRNOG00000054794 ENSRNOT00000091466 2 1 1 104 2 32297559 32297698 ATGCTTACTGCAGAACTGC 59 32297473 32297493 GGGAGTTCTGTCTTCAAACTG 59 Novel Rattus norvegicus 81 AABR07028092.1 ENSRNOG00000054941 ENSRNOT00000088096 3 1 1 87 17 56784470 56784488 CACAGTTTCCTGCTGAGAC 59 56782572 56784420 TGTAAATGAGTCTCCAGTGC 58 Novel Rattus norvegicus 81 AABR07007896.1 ENSRNOG00000056649 ENSRNOT00000079589 2 1 1 81 2 34006765 34006786 GGCACTAACATGATTAGATTGC 58 33995944 34006726 TCACATTTCTTTACCTCTCCTC 58 Novel Rattus norvegicus 81 AABR07008014.1 ENSRNOG00000053767 ENSRNOT00000082443 2 1 1 62 2 38913443 38913461 CAGGAGTTAAGAGGCTCAC 57 38909658 38909677 TAAAGAGACAACCTGCTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07059632.2 ENSRNOG00000052413 ENSRNOT00000078043 1 1 1 80 4 28270937 28271672 CAAATTCCGGTCTCAGAAGC 59 28270876 28270897 AAGCAACTCATTCTTCAAGAGG 59 Novel Rattus norvegicus 81 AABR07028511.1 ENSRNOG00000058351 ENSRNOT00000087046 3 1 1 80 17 73065549 73067554 CAAGCAAGCCTCCTAGGAG 60 73067595 73067616 GGTCCTTAGGATAGAAGCTCTG 60 Novel Rattus norvegicus 81 AABR07059641.1 ENSRNOG00000052257 ENSRNOT00000084091 2 1 1 80 4 29623276 29624097 TGTCAAAGATCAGGGCTCC 59 29623214 29623233 CTCTACCACATCTCCCTGAG 59 Novel Rattus norvegicus 81 AABR07070873.1 ENSRNOG00000058012 ENSRNOT00000088063 1 1 1 60 8 89236978 89236998 TCTTAGCACAGTATCCTCTGG 59 89235874 89236959 TTTCCACTGTCATTGTGAAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044807.1 ENSRNOG00000060396 ENSRNOT00000077552 3 1 1 80 20 21497534 21497552 TGTCTTAGGAGTGAAAGCG 57 21497288 21497492 CAATAAATGCCTAAGCCTCAG 57 Novel Rattus norvegicus 81 AABR07059875.4 ENSRNOG00000057708 ENSRNOT00000080394 1 1 1 80 4 39637155 39637175 GCCTATGCATGAGGAATAACG 59 39637001 39637114 TAGGCTCACAGATGCTTGTC 60 Novel Rattus norvegicus 81 AABR07044841.1 ENSRNOG00000061380 ENSRNOT00000078177 1 1 1 109 20 23359615 23359633 GTGTCCAGACTCCACAGAC 60 23351322 23359542 TTTCCTGGACAGGTGTTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07071210.2 ENSRNOG00000054553 ENSRNOT00000082571 3 1 1 83 8 104913750 104913876 AAGTTTCCAGAAGACAAGCAC 59 104913921 104913939 CAGTCTGGGAGAGGAACTC 59 Novel Rattus norvegicus 81 AABR07008259.1 ENSRNOG00000059924 ENSRNOT00000082762 1 1 1 63 2 49857584 49857605 CTGAAGTGTTATGAACTCACAC 57 49857628 49908101 ATAATTTCACCATGTCCCGT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07059991.1 ENSRNOG00000057163 ENSRNOT00000089128 3 1 1 121 4 47942513 47942531 GATCAGACTGAAGCTGAGG 57 47937488 47942058 GCCTTTGCTTTCTGTATTTCTC 58 Novel Rattus norvegicus 81 AABR07071299.1 ENSRNOG00000058871 ENSRNOT00000088614 1 1 1 84 8 108470826 108470844 GGTGTGATGGGAAGGAGTC 60 108466723 108466741 GTTCACCAAATCGTGCCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07060055.1 ENSRNOG00000055651 ENSRNOT00000078470 2 1 1 82 4 51738017 51738035 CAATGTGGTCGTGGATACG 59 51738080 51739317 GTCTGTCACCTTCTTGTCAC 59 Novel Rattus norvegicus 81 AABR07071402.1 ENSRNOG00000056542 ENSRNOT00000084690 2 1 1 100 8 114131946 114131964 ACATGAAGTGGCTGATCGA 59 114132028 114132761 CAGAGTAGGCCACAACCTC 60 Novel Rattus norvegicus 81 AABR07071551.2 ENSRNOG00000060625 ENSRNOT00000083631 1 1 1 81 8 121702877 121703660 GATGCCATAATCTCTGGTCTG 58 121702816 121702834 ATTCACAATGTCACCGAGG 58 Novel Rattus norvegicus 81 AABR07071552.1 ENSRNOG00000060361 ENSRNOT00000088551 1 1 1 60 8 121730407 121730428 AGACGTACACATTCAAATCACC 59 121726289 121730386 AACTTCTGGATGGCTGGAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07008597.1 ENSRNOG00000053100 ENSRNOT00000085017 3 1 1 99 2 66285632 66304335 GACTTATGGGACAGCATGG 58 66285551 66285570 CAATGCCATACTCAATTGGG 57 Novel Rattus norvegicus 81 AABR07060560.4 ENSRNOG00000057253 ENSRNOT00000083187 3 1 1 137 4 80811256 80849094 CAGGAATTCTCAAGTGTTTCTG 58 80811140 80811160 TCAATGTTCTTTCTCCTCTGG 58 Novel Rattus norvegicus 81 AABR07043877.1 ENSRNOG00000053551 ENSRNOT00000091533 1 1 1 60 19 45503977 45503996 TGAAGGATCTCCAAAGTCCC 59 45507270 45507291 TCTGAATCCATCAATAACCGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043928.1 ENSRNOG00000053616 ENSRNOT00000086963 2 1 1 93 19 48220960 48222075 ACAATTTGTTGAGCCCTTCC 59 48220886 48220904 CTCCTTCCTTTCGGTTGGT 60 Novel Rattus norvegicus 81 AABR07008878.1 ENSRNOG00000051488 ENSRNOT00000080367 3 1 1 82 2 77113591 77113612 AATAGTAGACTCAGAAGGCTGC 60 77113655 77161525 TCCAAGGTTGGTGGAACTC 60 Novel Rattus norvegicus 81 AC096792.2 ENSRNOG00000055230 ENSRNOT00000079155 3 1 1 82 7 133241880 133252490 GTTCACCCAAGGTCTACCA 59 133252535 133252554 CGCTGATCTTCGTAGTAGCT 60 Novel Rattus norvegicus 81 AABR07071697.1 ENSRNOG00000059784 ENSRNOT00000090101 2 1 1 93 8 126966291 126966309 GAGGGAGAAGTGGAAAGCT 59 126966366 126969202 CATTGGTGCCCACATAGAC 59 Novel Rattus norvegicus 81 AABR07044001.3 ENSRNOG00000056389 ENSRNOT00000079701 2 1 1 173 19 52065972 52065990 GACCCAGAGTCCTTGACAG 59 52066125 52067119 GAGTACTGGTATCACCTTGGG 60 Novel Rattus norvegicus 81 AABR07058722.1 ENSRNOG00000058598 ENSRNOT00000090880 1 1 2 68 7 134985986 134988458 ATGATCTCTTCCCGTTGTG 57 134988490 134988508 GAACTGGATTGGCTTGGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044063.2 ENSRNOG00000056401 ENSRNOT00000081448 2 1 1 81 19 54532219 54532238 GAGAAAGAGCAGTAGCAACG 59 54531293 54532177 GTTGTTTGAAGGTACCTGTCC 59 Novel Rattus norvegicus 81 AABR07071753.1 ENSRNOG00000060074 ENSRNOT00000083759 2 1 1 66 8 129440015 129440035 AGTATCTTGATGGCCTGTGAG 60 129439447 129439465 TTCTGGCCTGTTAACTTGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058786.1 ENSRNOG00000054027 ENSRNOT00000077802 2 1 1 100 7 137482048 137482066 TCTCCTGGCATCTTTAGGT 58 137480350 137481985 AATAAATGCACCTCCAAGGG 58 Novel Rattus norvegicus 81 AABR07044139.1 ENSRNOG00000057718 ENSRNOT00000086567 2 1 1 152 19 59408071 59408090 GGGAGGCAACATAAATGTGG 59 59408205 59408864 AATCTCACCGGAAGTCCTG 59 Novel Rattus norvegicus 81 AABR07058804.1 ENSRNOG00000058147 ENSRNOT00000080869 3 1 1 72 7 138150141 138150662 ACTCTCCATACACTGCAGG 59 138150087 138150108 CTGAAGGTGTAACTTGTCTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058815.1 ENSRNOG00000055003 ENSRNOT00000077822 2 1 1 80 7 138414462 138424268 GCTCAGTTATGCTTGTTCAG 57 138414401 138414421 TAGCATTTGGAAGGAAGATGG 58 Novel Rattus norvegicus 81 AABR07009260.1 ENSRNOG00000053978 ENSRNOT00000086047 3 1 1 81 2 90606129 90606640 GGAAGAATGATTTGGAGATTGGG 60 90606678 90606699 GAGAAGTACAGCTGTAAACAGC 59 Novel Rattus norvegicus 81 AABR07010033.1 ENSRNOG00000053304 ENSRNOT00000077121 1 1 1 60 2 121570261 121570279 TGATAGAATGGCAGCTGTG 58 121570219 121570238 CCAAGCGACATGAAGTACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010183.1 ENSRNOG00000059781 ENSRNOT00000088782 1 1 1 60 2 128381477 128381907 TAGCCCTCCTATACAGTTGC 59 128381929 128381948 CCTGATCTAGGACAGTCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010592.2 ENSRNOG00000059218 ENSRNOT00000078727 2 1 1 116 2 142079489 142084822 GGTTCTTAGGAATTCCTGGTG 58 142079393 142079412 CTTAACCTCTGAGCTGTCTC 58 Novel Rattus norvegicus 81 AABR07011145.1 ENSRNOG00000059427 ENSRNOT00000078981 1 1 1 79 2 158978148 158978166 ATTGTCAACCACTTCCCAC 58 158963682 158978107 ACCTTTACTTTCTTGTCTCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07011512.1 ENSRNOG00000061049 ENSRNOT00000089194 3 1 1 121 2 162986972 162988715 TTTCTTTCGAGATTCCTCCAG 58 162988797 162988816 TTGGTAAATGACTTTGCCGA 58 Novel Rattus norvegicus 81 AABR07011945.1 ENSRNOG00000056840 ENSRNOT00000084741 2 1 1 161 2 177343807 177343825 ATACCTGGAGAGTTGGCAC 59 177343231 177343683 TTCTTTGTCTCAGGAATCCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07012051.2 ENSRNOG00000057323 ENSRNOT00000087787 1 1 1 81 2 183913600 183914888 TCAGCATACCAAAGCCTCC 60 183913537 183913555 CCTCCAGGTGACTGATGTC 60 Novel Rattus norvegicus 81 AABR07012081.2 ENSRNOG00000058727 ENSRNOT00000080610 2 1 1 91 2 184916591 184916844 CTTGTGTCATGTGGACCTC 58 184916518 184916536 TATCGAAGCACAGTGTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012613.1 ENSRNOG00000058608 ENSRNOT00000086269 1 1 1 82 2 199439400 199439418 GAGTCTTTCCTGGGAAGCT 59 199433087 199439354 GTGGGTGACTGGAGAAGAG 59 Novel Rattus norvegicus 81 AABR07012702.1 ENSRNOG00000055403 ENSRNOT00000089188 3 1 1 80 2 202664292 202665805 TAAGGATGCTAGGTCTGCT 58 202664230 202664248 TCTTCTCTGGGACATTCCT 57 Novel Rattus norvegicus 81 AABR07014161.1 ENSRNOG00000052143 ENSRNOT00000091056 3 1 1 81 14 4064523 4064542 TGCTCCTCCATAGATCATGC 60 4064583 4064744 TTGTCTTTGGATCCTGAGTAGG 60 Novel Rattus norvegicus 81 AC129843.1 ENSRNOG00000057001 ENSRNOT00000089419,ENSRNOT00000079451 3 2 2 84 2 211646698 211647849 GACGAGAGGACACATTGGA 59 211647895 211647915 TGTTTAACTGCTTCATGCCTG 60 Novel Rattus norvegicus 81 AABR07012943.1 ENSRNOG00000057573 ENSRNOT00000091861 2 1 1 81 2 216061623 216062300 ACTCAACTGTCTGCATAACTC 58 216062340 216062361 CTACAGCAGTTCAAAGAAAGTG 58 Novel Rattus norvegicus 81 AABR07013157.2 ENSRNOG00000052653 ENSRNOT00000088658 2 1 1 77 2 225143154 225143172 TCTCTTTCTGAAGGGCGTG 60 225143213 225143954 TTTAGGTGAGGAAAGGGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07013746.1 ENSRNOG00000059921 ENSRNOT00000082882 2 1 1 91 2 254228390 254249402 CTACTCATGTAGTATTGCTATGAGG 59 254249451 254249469 GTTCTCAAGGAGCGAAGTC 58 Novel Rattus norvegicus 81 AABR07013914.1 ENSRNOG00000058005 ENSRNOT00000077348 3 1 1 85 2 262799848 262803677 CCTGATAGGTGAACTACAACAG 58 262803722 262803741 CAAACAGGTGACTGTCACTC 59 Novel Rattus norvegicus 81 Rn60_X_0224.3 ENSRNOG00000056849 ENSRNOT00000086786 3 1 2 82 X 22369777 22399617 GATACCCAGAACATCCACC 57 22369713 22369732 AGATACTTCTGATGAGCCCT 58 Novel Rattus norvegicus 81 Rn60_7_1158.3 ENSRNOG00000051088 ENSRNOT00000076749 3 1 2 108 7 115830356 115830374 CACTCACTACGGACTCTCC 59 115828725 115829948 CTGAGTCACCACTGTCCTC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000041737 ENSRNOT00000063490 3 1 1 60 1 70440761 70440781 TGATTAGTTCTTGGATGGGAG 57 70440721 70440743 CTACATCAGTAGATCCCTGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014242.1 ENSRNOG00000051404 ENSRNOT00000057117 3 1 1 60 14 5868862 5868882 CTTAAGATAGAGTGTGGGCCT 59 5868822 5868843 TTGTTACAAATCTCACAGACGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC112355.1 ENSRNOG00000057744 ENSRNOT00000083920 1 1 1 80 X 53046034 53046056 AGATTTCACCTCACATGCG 58 53046099 53046118 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 AC112355.1 ENSRNOG00000057744 ENSRNOT00000083920 2 1 1 80 X 53046033 53046056 GAGATTTCACCTCACATGCG 59 53046098 53046117 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000056355 ENSRNOT00000077921 3 1 1 74 4 70504088 70504108 ATTGTTCACTTAACTGGTGGG 59 70504141 70504162 CAATGGTTACATCAAGAGTGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053399 ENSRNOT00000087208 2 1 1 60 1 271059378 271059400 CGATACAGAGAAGATTAGCATGG 59 271059340 271059358 AACGCTTCATGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000074856 3 1 5 80 6 114783591 114791352 CCAAATAAAGATAGTACCCGAGTG 59 114783534 114783554 TTTGAAATCCTCTAGCAGGCT 60 Novel Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000057756 3 1 5 80 6 115018649 115018674 CTAAGAATACAGAGTCTGAAGGAG 58 115001662 115001681 CATCCTCCTTAAGTGCTCCT 59 Novel Rattus norvegicus 81 Rn60_7_1165.1 ENSRNOG00000037374 ENSRNOT00000056556 3 1 2 82 7 116560030 116561002 GTGTGCAGAAAGAGCTCAG 59 116559966 116559984 AGGTAGCAGTTGATGAGCA 59 Novel Rattus norvegicus 81 AABR07012588.1 ENSRNOG00000059842 ENSRNOT00000089486 2 1 1 85 2 198601737 198601755 AAGAGCTCAGAGCAAACCA 59 198601805 198601823 CTGTGGTAAGGAATCCGGG 60 Novel DesignNoJunction Rattus norvegicus 81 RGD1562392 ENSRNOG00000031833 ENSRNOT00000050420,ENSRNOT00000082579 3 2 2 80 9 4269287 4269306 ACAACTGGAGTCAGATTCAG 57 4269348 4269715 ATGTTGTCCCTGATTTAGGG 57 Novel Rattus norvegicus 81 LOC100910057 ENSRNOG00000047369 ENSRNOT00000085330,ENSRNOT00000061864 2 2 3 80 9 4093085 4093105 GTCAGATTCAGACCTTCAAGG 59 4093145 4097393 CTTGAATCCATGTTGTCCCTG 59 Novel Rattus norvegicus 81 AABR07013073.4 ENSRNOG00000061165 ENSRNOT00000082067 1 1 1 69 2 221659319 221659337 TAAGGTGTTCCTTGGAGCC 59 221659371 221659389 GAGTTCTCGAGTCTCTGCC 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000059528 ENSRNOT00000078613 1 1 1 60 3 165570769 165570790 AACGATACAGAGATTAGCATGG 58 165570730 165570748 AACACTTCAGGATTTCGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135026.1 ENSRNOG00000054620 ENSRNOT00000083884 1 1 1 113 1 48880210 48891017 AAAGAATGGAGGATGTATGCAC 59 48880118 48880136 TCAAACCAGTGATCACCCA 59 Novel Rattus norvegicus 81 Rn60_13_0801.2 ENSRNOG00000051166 ENSRNOT00000076067,ENSRNOT00000076847 3 2 3 80 13 75164267 75164286 ATCTCTGACCCTTTCTGGTC 59 75164325 75167549 ATAAGAGCCTTCATCCTCTAGTG 59 Novel Rattus norvegicus 81 Mad2l2 ENSRNOG00000009134 ENSRNOT00000083678 1 1 3 80 5 164954160 164954178 TTTGGATAAGGAACACCGC 58 164954220 164954883 GAGTCTGAATTGATGGACAGC 59 Novel Rattus norvegicus 81 RGD1302996 ENSRNOG00000000812 ENSRNOT00000084723 3 1 3 103 20 3367401 3368495 CTTTACCGGACCTTTGATGC 59 3368643 3368662 GTTGATGGTGAGTGTGAAGG 59 Novel Rattus norvegicus 81 U2 ENSRNOG00000057902 ENSRNOT00000090295 2 1 1 60 1 194743846 194743867 GGAAGTAGGAGTTGGAATAGGA 59 194743807 194743826 TGCAATACTAGGTCGATGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362640 ENSRNOG00000003201 ENSRNOT00000004278 3 1 2 82 X 72075658 72075677 AGGTGAATGACACCATTCAG 58 72074838 72075613 CATACACAGGTTCCCAGTG 58 Novel Rattus norvegicus 81 AABR07068221.1 ENSRNOG00000048180 ENSRNOT00000035085 1 1 1 104 9 91063582 91063605 TGTTACTAAAGATGCATGTGGG 59 91063499 91063517 CATACCCAAGCACCATTGG 59 Novel Rattus norvegicus 81 AABR07012039.1 ENSRNOG00000061763 ENSRNOT00000081080 3 1 1 86 2 183250819 183250888 CGTTTATAGAAGATGATTGGGAAGG 60 183250757 183250775 TGCTTTCTCCACTGTCCTC 59 Novel Rattus norvegicus 81 Col4a4 ENSRNOG00000014851 ENSRNOT00000075968 3 1 4 98 9 88253750 88253768 CCTCCAGGTAAGCTCTTGG 60 88246708 88253688 AGGTTCACCTTCTGGACTG 59 Novel Rattus norvegicus 81 LOC100363178 ENSRNOG00000043375 ENSRNOT00000085178,ENSRNOT00000021288 3 2 2 102 2 208383487 208545141 CTTTCACCTGGCACTTCAG 59 208550239 208550260 GTACACAAACGATCAGAATGGA 59 Novel Rattus norvegicus 81 AC113925.1 ENSRNOG00000016661 ENSRNOT00000022332 2 1 1 67 1 169095042 169095060 CAAGAGGAGCAGATCCGAG 60 169095092 169095110 GGCACAAAGAACACAAGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AC113925.1 ENSRNOG00000016661 ENSRNOT00000022332 3 1 1 69 1 169095069 169095089 ACATGTACTTCACATCTGTGC 59 169095121 169095139 AGCGGTGTACAAGAGACAG 60 Novel DesignNoJunction Rattus norvegicus 81 AC130866.2 ENSRNOG00000059679 ENSRNOT00000079547 1 1 2 80 4 113982397 113983037 CTCATCAACAAGGAGACTAGG 58 113983079 113983097 GTTGCTGATACTGAGGGTG 58 Novel Rattus norvegicus 81 AABR07052848.1 ENSRNOG00000061249 ENSRNOT00000077487 2 1 1 64 3 79151577 79151595 TATTCAAGCTTGCCTGCAC 59 79151529 79151547 GATTAGACCACTGTTGGCC 58 Novel DesignNoJunction Rattus norvegicus 81 AC133273.1 ENSRNOG00000002486 ENSRNOT00000003363 1 1 1 70 10 34593466 34593484 TATTCTGAGAGCAAGGGCA 58 34593520 34593538 ATCAGAGGGTTGAGCATGG 60 Novel DesignNoJunction Rattus norvegicus 81 RGD1561796 ENSRNOG00000007268 ENSRNOT00000068577 2 1 2 128 10 11879764 11880326 GAAACACAGCTTCCAGTTCC 60 11880417 11880435 ACAAGGGACACATGGTCTC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060400 ENSRNOT00000085105 1 1 1 60 5 88341896 88341914 TTGCTGTGCTACACAAGTG 59 88341854 88341874 CACTTGAGTGTAGATGTAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142178.3 ENSRNOG00000053650 ENSRNOT00000083003 3 1 1 60 11 36589479 36589497 TCTCAACAGTTCGCTTAGG 57 36589520 36589539 TCCCTTGTTATTGTGTAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056973 ENSRNOT00000078426 3 1 1 60 3 4094133 4094151 AGAGGCTATGTCTACGCTC 58 4094091 4094111 GTCAGGCTACAAATCATTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC117925.3 ENSRNOG00000053486 ENSRNOT00000090713 3 1 1 87 4 114764489 114764654 GATTCAGCCTGAGATGCTG 58 114764705 114764723 CTGGTTCAGGAGGTCTCTG 59 Novel Rattus norvegicus 81 LOC100912599 ENSRNOG00000023387 ENSRNOT00000076399 2 1 2 147 1 31264855 31264873 GAGAAGATCACGCATACCG 58 31265858 31272602 CTCATTCACCTCTTTCTGACG 59 Novel InUTR Rattus norvegicus 81 AABR07070131.2 ENSRNOG00000053732 ENSRNOT00000090843 3 1 1 60 8 53903705 53903725 ACTGCCAGGATCTATCTATGG 59 53903747 53903767 GGGAATTCCTTTGAAATTCGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054461.1 ENSRNOG00000058375 ENSRNOT00000082528 1 1 1 64 3 154986150 154986169 TGATGATCGTCTGGTTACAC 58 154988844 154988865 GCATAAATCCGAATCATCTTCC 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_1_1359.1 ENSRNOG00000051039 ENSRNOT00000076147,ENSRNOT00000076482,ENSRNOT00000076561 1 3 4 103 1 134884870 134884889 AGAACCCTTGGGAAATTCTG 58 134873735 134878985 CAAGCTGGGTGTAAATGCT 59 Novel Rattus norvegicus 81 Cfb ENSRNOG00000000419 ENSRNOT00000075928,ENSRNOT00000065044 3 2 2 81 20 4543431 4543603 ACCTGTAAAGACCATGAGAC 57 4543369 4543387 TCATTCTGTTCCCGTTCAG 58 Novel Rattus norvegicus 81 Cfb ENSRNOG00000000419 ENSRNOT00000065044 2 1 2 114 20 4559407 4560662 CTGCAAACCTGTTCGATGTC 60 4559312 4559330 GAAACCATGCTCACACTCG 59 Novel Rattus norvegicus 81 AABR07067403.1 ENSRNOG00000056370 ENSRNOT00000081559 1 1 1 75 9 43488583 43488602 TGCCTGGTATCTTGTTTCTG 58 43488522 43488541 AGTCAAACTTCCTCTGTCTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07048040.1 ENSRNOG00000055171 ENSRNOT00000091069 1 1 1 76 5 58031738 58031758 GATAGCATCAAATGGCTTCTG 58 58022462 58022480 CATGATGCAGGACTTCCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000611.1 ENSRNOG00000051380 ENSRNOT00000085289,ENSRNOT00000088342 1 2 3 86 1 19639163 19639280 CATTGATGTATCTGCAACTGC 58 19639097 19639116 TCGTTGATGTTCTGGATGTC 58 Novel Rattus norvegicus 81 AABR07030473.1 ENSRNOG00000052682 ENSRNOT00000091161,ENSRNOT00000089145 3 2 2 118 10 88568176 88568195 CAACATCCAGCTGAACTCTG 59 88567742 88568095 GTATGGAATACCCTGGCCC 60 Novel Rattus norvegicus 81 AABR07016058.1 ENSRNOG00000056762 ENSRNOT00000084669 3 1 1 61 14 93085263 93085281 CAGAAGTCCATGGAACCTG 58 93086750 93086769 CTAGTTGCAGGATTCCATGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030566.1 ENSRNOG00000051740 ENSRNOT00000081453,ENSRNOT00000089480 2 2 2 94 10 93159184 93159764 TCTCCAAGGTGGTAAAGTCG 60 93159819 93159839 GCTTCAGATCTTGAAGTTCCG 59 Novel Rattus norvegicus 81 AABR07062363.1 ENSRNOG00000057540 ENSRNOT00000078138 3 1 1 67 4 171959380 171959399 TAGACATCAGCAAGTACCCA 58 171960447 171960465 AATCGTTTATGGTCGCCGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07031588.1 ENSRNOG00000055148 ENSRNOT00000091842 2 1 1 67 18 21111560 21111579 CTGTGACAGACGTCTTACTG 58 21113406 21113429 CTGGTTCTTCAACAACTCTAAGTC 60 Novel DesignNoJunction Rattus norvegicus 81 LOC103692471 ENSRNOG00000058834 ENSRNOT00000090485,ENSRNOT00000089677 2 2 2 81 5 142406975 142406993 GCCATACAGACATCACCGT 60 142405994 142406931 ATGTGCTGGTCTGTGATAGG 60 Novel Rattus norvegicus 81 AC103574.2 ENSRNOG00000055796 ENSRNOT00000079840 1 1 1 60 1 64235371 64235389 CGTCACTAAGCAGACACAG 58 64236954 64236975 CTTTGACCAATGATTCATGGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07064829.1 ENSRNOG00000055780 ENSRNOT00000085495 1 1 1 60 6 97206216 97206235 GACCATGGATTAAGCAACAC 57 97205293 97205311 CTACAGAGGGAGGGATGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065281.1 ENSRNOG00000054309 ENSRNOT00000091058 1 1 2 92 6 119129184 119137133 TCTGTGATTGCTGTCGGAG 60 119137189 119137207 ATTGGAGTGAGGGAAAGGC 60 Novel Rattus norvegicus 81 AABR07021316.1 ENSRNOG00000059672 ENSRNOT00000081319 2 1 1 60 13 65747803 65747824 AATCCTGACTTCATGTTCAGAG 58 65750231 65750251 TAGGTAGCTCTATGAGCTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052432.1 ENSRNOG00000053183 ENSRNOT00000082715 2 1 1 63 3 53506043 53506061 GAAATGTCAATCCGCTGGT 59 53444348 53444366 CATCCCTGATTGCTTCCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053134.1 ENSRNOG00000052209 ENSRNOT00000084743 1 1 1 60 3 93435922 93435940 TGAGTGGTGAGGAAAGAGG 59 93436794 93436812 CTCAGGCCAAGTAGACACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053134.1 ENSRNOG00000052209 ENSRNOT00000084743 2 1 1 60 3 93435923 93435941 GAGTGGTGAGGAAAGAGGA 58 93436795 93436813 TCTCAGGCCAAGTAGACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053470.1 ENSRNOG00000058999 ENSRNOT00000084537 2 1 2 80 3 108640508 108640528 CCGTCGTTCATTCTTTAAGCA 59 108640273 108640468 TTCATTTGCTTCCTGACATGC 60 Novel Rattus norvegicus 81 AABR07035780.2 ENSRNOG00000058123 ENSRNOT00000082092,ENSRNOT00000092040 3 2 2 89 12 22369855 22369876 TGGCTTTGTGTTCAATAAGGAC 60 22369925 22370341 TTCTTACCTGCCGGAATGAG 60 Novel Rattus norvegicus 81 AABR07035926.1 ENSRNOG00000057434 ENSRNOT00000078049 1 1 1 62 12 28150434 28150452 TCTCACAGAGGGATTGCAG 59 28145651 28145669 TGCCATCTCTGTTCTGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056464.1 ENSRNOG00000060280 ENSRNOT00000078205,ENSRNOT00000088976 1 2 2 80 7 26146117 26146450 GGAGACTATATTAGGCGTTATTTGC 60 26146061 26146079 TTCTGGTGCATTCCAAGGA 59 Novel Rattus norvegicus 81 AABR07069008.3 ENSRNOG00000061918 ENSRNOT00000077575 3 1 3 149 8 5173952 5175613 CAGCAGTATGAAGAAGATACCAG 59 5171955 5171973 GCTTTGCAAGACTCATGGA 59 Novel Rattus norvegicus 81 AABR07056683.1 ENSRNOG00000061791 ENSRNOT00000083290 1 1 1 71 7 36160484 36160502 ATTCCAGAAACTGCTCCCT 59 36164774 36164792 ATATGGTCATGTGGATCGC 58 Novel DesignNoJunction Rattus norvegicus 81 AC106606.1 ENSRNOG00000058736 ENSRNOT00000084033 1 1 1 60 1 273969826 273969844 CGATTTCAGGGACACTAGG 57 273968416 273968434 GTGACTGCTAATGCAGACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028917.1 ENSRNOG00000053864 ENSRNOT00000085385,ENSRNOT00000088497 2 2 2 80 10 196627 197043 AGTGGATTCAGGAACGAGG 59 196565 196585 TCCAGAAGATGTCAGTCATCC 59 Novel Rattus norvegicus 81 AABR07043748.2 ENSRNOG00000055745 ENSRNOT00000092177,ENSRNOT00000085034 3 2 2 99 19 38370078 38385840 GTTCCATTGTGATGATATGGC 58 38366099 38370017 CTTTGCTGACACCACTCTC 59 Novel Rattus norvegicus 81 AABR07040906.1 ENSRNOG00000053818 ENSRNOT00000085833,ENSRNOT00000084744 3 2 2 80 X 113550887 113550906 CCTGCAAACAACTATGGGTG 60 113550948 113581954 CTGAGGAGGTGTCTTTCCAG 60 Novel Rattus norvegicus 81 AABR07029221.1 ENSRNOG00000058625 ENSRNOT00000079187 1 1 1 60 10 16236010 16236029 GGAAGAAAGATACGTTGGGA 57 16236412 16236433 TCCGTCTTCTTTCTATCTTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07070799.1 ENSRNOG00000058073 ENSRNOT00000078973 1 1 1 61 8 84681119 84681137 GAAGAAGTGGACCATCAGC 58 84671541 84671559 AGTGGCACCATCAGAAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044186.1 ENSRNOG00000056378 ENSRNOT00000085990 3 1 1 60 19 61789227 61789247 TCTGGCTCCAGTAAACAAGAG 60 61784878 61784899 CTTTCTTGGCTACATTTCCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07009536.1 ENSRNOG00000059377 ENSRNOT00000087131 2 1 1 85 2 102164297 102164316 CTTAACTGCTGAGCCATCTC 59 102154154 102154173 TCAATAAGCCAGATCTGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07007095.1 ENSRNOG00000056674 ENSRNOT00000077806 3 1 1 75 1 281314664 281314683 AAATGGAAGTTACCCAGCCA 60 281314238 281314259 GAGGAAGATTTGTCGTTTAACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07014161.2 ENSRNOG00000055494 ENSRNOT00000080547 3 1 1 60 14 3993504 3993524 GGAGGATTTACTGATGGTTCC 58 3983287 3983305 GAGAAGCATCCTGTTAGGG 57 Novel DesignNoJunction Rattus norvegicus 81 Hspa4l ENSRNOG00000010819 ENSRNOT00000015474 3 1 1 81 2 127632192 127634606 CAGCTAAGAGCCAGATAGTC 57 127634648 127634668 GGATCATCAAATGATCGTCCA 58 NA Rattus norvegicus 81 Kprp ENSRNOG00000028865 ENSRNOT00000042142 3 1 1 60 2 193133142 193133160 CCATTCATTGTCCCAGTCC 58 193133100 193133119 CCTAGTTCTTGGCTGTAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102552128 ENSRNOG00000050724 ENSRNOT00000056486 1 1 1 165 2 193007795 193007813 TGTGTCTTCCTGCTGTAGC 60 193007648 193007666 ACAGCATCCAGAGCTATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rs1 ENSRNOG00000030434 ENSRNOT00000040912 2 1 1 80 X 35753310 35761808 CTTAGACTGTATTCCAGAATGCC 59 35753252 35753272 CAAGTGATCTGATCTGGTGTG 59 NA Rattus norvegicus 81 Rxfp3 ENSRNOG00000023126 ENSRNOT00000031693 1 1 1 60 2 61007415 61007433 TGATGAAGAGCAAACAGGG 58 61007373 61007392 GCCAGGTTAGTGACAAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mbnl1 ENSRNOG00000014076 ENSRNOT00000088461,ENSRNOT00000036808 1 2 2 80 2 150846714 150855970 CAGACAGACTGGAGGTGTG 60 150856013 150856032 CAGGATGAGCAAATCGACAG 59 NA Rattus norvegicus 81 Tmem27 ENSRNOG00000003960 ENSRNOT00000005348 3 1 1 80 X 32148942 32148965 GAATATCTCTTCAGAGCAATGGTG 60 32139389 32148904 CAGGACGTGGGAAATTTCTG 59 NA Rattus norvegicus 81 LOC680190 ENSRNOG00000047829 ENSRNOT00000051551 3 1 1 60 X 43781373 43781393 GCAACAACAGATTATGTCACC 58 43781333 43781354 CGAATATACAAAGGAACGAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hist2h2ac ENSRNOG00000030736 ENSRNOT00000051917 2 1 1 65 2 198360438 198360456 AAGAAGACCCGCATCATCC 60 198360391 198360410 CTTGTTGAGTTCTTCGTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcpt2 ENSRNOG00000020625 ENSRNOT00000027988,ENSRNOT00000091757 1 2 3 80 15 35032727 35032746 TCATCTGTGGTGGGTTTCTC 60 35032786 35033324 GGATGACTGTGATTTCTCTTCC 59 NA Rattus norvegicus 81 Usp19 ENSRNOG00000049531 ENSRNOT00000085038,ENSRNOT00000074772 3 2 2 80 8 117289176 117289299 AGTTTCCAGTTCGGAACCT 59 117289341 117289361 CATACAGGTCATAGCTAGGCA 59 NA Rattus norvegicus 81 Arhgef16 ENSRNOG00000046803 ENSRNOT00000072786,ENSRNOT00000082847 2 2 2 80 5 171629708 171630172 GTAAGGTCAAGTCCCTCCC 59 171629646 171629665 TGGATTCTTCCAAGAGGAGG 59 NA Rattus norvegicus 81 Siae ENSRNOG00000031266 ENSRNOT00000044293 2 1 1 80 8 40096878 40096896 TCAGCCTGAGATAAAGCCC 59 40096940 40098320 TCACATGGGACAAACCTCC 60 NA Rattus norvegicus 81 AABR07037166.1 ENSRNOG00000059740 ENSRNOT00000087609 2 1 1 60 X 14783513 14783533 GTCTACTTTGACCGTGATGAC 59 14783473 14783492 ACTTGCTCAAGAAGAAACGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Depdc1b ENSRNOG00000010701 ENSRNOT00000014270 2 1 1 80 2 40040835 40041887 TACGACGTTGTCACATTTACAG 59 40041926 40041946 TTGGAGTTGACAAGCTTTGTG 60 NA Rattus norvegicus 81 Tssk1b ENSRNOG00000032856 ENSRNOT00000052200 2 1 1 60 11 87240245 87240263 TGTCTGACTTTGGCTTCTC 57 87240203 87240221 CTTAATGTCAGCCGACCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3583 ENSRNOG00000049006 ENSRNOT00000074381 1 1 1 60 5 150732630 150732649 AGATCACGTTCATGAAGTGC 59 150732667 150732690 CAAGATAGACAACTGCATGAAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Med8 ENSRNOG00000028477 ENSRNOT00000067237 2 1 1 61 5 137243340 137243598 TTCTAGAAGTCCATTCTAGGGA 58 137243619 137243638 GAAGCTGACTTGATGTTGGT 59 NA DesignNoJunction Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000052176,ENSRNOT00000078843,ENSRNOT00000087293,ENSRNOT00000005328 1 4 5 85 X 26442559 26442581 GCCCTGGTTATATCAACTTAAGC 60 26443983 26444271 ATAGGAAGGATACGGCTGC 59 NA Rattus norvegicus 81 Rn60_1_1340.1 ENSRNOG00000051108 ENSRNOT00000077007 2 1 1 60 1 132891973 132891992 CATCGGCTGGCTAATAAAGG 59 132892015 132892033 CTTAGGCTTCACATGGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dyrk1a ENSRNOG00000001662 ENSRNOT00000050342 3 1 1 84 11 34922328 34926987 ACTAACCAGGTGATGCCTG 59 34927035 34927053 TTCTCAGAGGAGCAGTTGC 60 NA Rattus norvegicus 81 Fam163b ENSRNOG00000006591 ENSRNOT00000008660 1 1 1 80 3 5658589 5661548 ACTGTCGACTCCAGTATTACTG 59 5658530 5658548 GAGAATGCACAGCGAAGTC 59 NA Rattus norvegicus 81 RGD1565536 ENSRNOG00000028910 ENSRNOT00000092158,ENSRNOT00000045362 2 2 2 82 3 110554833 110554853 ACTCACTTGGTACTTTCAGCA 60 110554689 110554790 TACTATCCGTTTGGCCTTGG 60 NA Rattus norvegicus 81 Zfp300 ENSRNOG00000046469 ENSRNOT00000072087 2 1 1 85 X 908564 909170 AAATTGCACAGAAGATGGGC 60 909216 909236 CGGATATAGTCTGTTCCAGGG 60 NA Rattus norvegicus 81 Zdhhc24 ENSRNOG00000019825 ENSRNOT00000026832 2 1 1 115 1 220137477 220137496 TATCAGCTGCTCAATCTGCT 59 220137574 220138696 TGGTAACAGTAAGCCCAGC 60 NA Rattus norvegicus 81 Adad1 ENSRNOG00000017246 ENSRNOT00000023282,ENSRNOT00000077096 1 2 2 80 2 123806483 123806504 ACAGAACATCAACCTTTACCTC 58 123806543 123808094 GGATTAAGGCGTAACTGTGAC 59 NA Rattus norvegicus 81 RGD1566387 ENSRNOG00000013698 ENSRNOT00000018322 2 1 1 60 X 122314226 122314246 AACAAACCGTAAAGGAAGGAG 59 122314267 122314286 CATTTATCATAGCCAGCCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr232 ENSRNOG00000049748 ENSRNOT00000047839 2 1 1 60 1 171196511 171196533 CTTATTTCTGGGCATCTATCTGG 59 171196473 171196494 AACAAGGAACATGAGAAGTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC686143 ENSRNOG00000023511 ENSRNOT00000032698 3 1 1 80 2 193184755 193184773 GATACTCAGCTGCAGTTCC 58 193184663 193184711 CTGGACATTTCACGTAGGT 57 NA Rattus norvegicus 81 Gpr15 ENSRNOG00000039680 ENSRNOT00000002258 3 1 1 84 11 44002947 44002965 CAACGCAACTTCAGGTCTC 59 44003010 44003178 CAAAGCTATGACAGATGAAGGC 60 NA InUTR Rattus norvegicus 81 AABR07037395.2 ENSRNOG00000052559 ENSRNOT00000075010 1 1 1 60 X 19855219 19855240 CTTCACCAACAGAATACAAGAG 57 19855258 19855279 TTCTATGGAATCTTCTGCTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ces2i ENSRNOG00000012034 ENSRNOT00000090543,ENSRNOT00000015997 1 2 2 80 1 282572316 282572334 GCCTCAGACTCAGAAGCTC 60 282572375 282572672 CTTGAAGACCTGGTTAATAGCC 59 NA Rattus norvegicus 81 Trmt44 ENSRNOG00000008898 ENSRNOT00000011824 2 1 1 80 14 80365538 80365556 GTTTGGCCTGAAGTAACCG 59 80365599 80366507 TTCCCATAGGATCAACAGGT 58 NA Rattus norvegicus 81 Fgg ENSRNOG00000025074 ENSRNOT00000034521 2 1 1 81 2 181993711 181993735 GAAGATAATTCCCTTCAACAGACTC 60 181993773 181994324 CATGTCTCCAACCTGTTTGG 59 NA Rattus norvegicus 81 AABR07054514.1 ENSRNOG00000052231 ENSRNOT00000071502 1 1 1 60 3 158847731 158847751 TATTTCTGTGATCTCCTCCCT 58 158847771 158847791 CCTTATTGACATAGGTGCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ubtd1 ENSRNOG00000013813 ENSRNOT00000018485 2 1 1 153 1 261278079 261278097 GATGAGTTCTGGGACACAG 58 261278214 261279490 AAAGAGTTCCATGAGGCAG 57 NA Rattus norvegicus 81 Rorc ENSRNOG00000020836 ENSRNOT00000067042 3 1 1 81 2 195627281 195628423 CAGAGATGCTGTCAAGTTCG 59 195628467 195628485 CTGTTGCAGTTGTTTCTGC 58 NA Rattus norvegicus 81 Rn60_2_0072.1 ENSRNOG00000050870 ENSRNOT00000074476 3 1 1 60 2 7230868 7230886 GAATTTCGGGAAGGAGGAC 58 7230826 7230847 CTATTCGTGGCTGATATTTCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc26a7 ENSRNOG00000006096 ENSRNOT00000088165,ENSRNOT00000067331 3 2 2 81 5 27994537 27994556 TTTGGTCCTGAATTGCAGTG 59 27990842 27994495 CTTGCAATCAAGGTAGAGCTC 59 NA Rattus norvegicus 81 Arfip1 ENSRNOG00000010533 ENSRNOT00000014236,ENSRNOT00000082077 2 2 2 80 2 183529494 183534332 AACACATATAAGTGTACTCGGC 58 183529435 183529453 AGCTTCAAGTTCAAGGTCC 58 NA Rattus norvegicus 81 LOC365238 ENSRNOG00000015168 ENSRNOT00000020345 2 1 1 115 1 94781069 94782429 ACTACAGACTCAGGAATTGTG 58 94780974 94780992 GTATGCCTCCATAGTGCTC 58 NA InUTR Rattus norvegicus 81 LOC100911361 ENSRNOG00000051193 ENSRNOT00000076198 1 1 1 60 2 121130608 121130626 CACGATCCAAAGGAACCAG 59 121130566 121130584 TTTCAAAGCTCAGACCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911107 ENSRNOG00000048576 ENSRNOT00000074842 2 1 1 80 17 32073154 32073175 AGATACTTCTCCCTGAGAATGG 59 32072573 32073115 ACAGGACTCCTTAAAGGTAGG 59 NA Rattus norvegicus 81 RGD1306233 ENSRNOG00000010152 ENSRNOT00000013473 3 1 1 80 3 7051793 7051811 CGACTACTACCGCATTAGC 58 7050992 7051750 GCTTCATTGGTACTGTAGCC 59 NA Rattus norvegicus 81 Fancb ENSRNOG00000003346 ENSRNOT00000004456,ENSRNOT00000082358 2 2 2 93 X 31130159 31130177 TGCAAACTCTTGGAAGGCT 60 31129020 31130104 AAGACCACCCTGTTCTAACTG 60 NA Rattus norvegicus 81 Arl13b ENSRNOG00000047194 ENSRNOT00000074108 2 1 1 80 7 1131950 1132981 GTCAGAACCAGGTGATAACAG 59 1131890 1131910 GTATTGACTGGTTCTACCCGA 59 NA Rattus norvegicus 81 AABR07013931.2 ENSRNOG00000053997 ENSRNOT00000082326 3 1 1 61 2 264180146 264180164 AAGCAATGGACATCCAAGC 59 264180187 264180207 GTTCTTCTCTGGTCTCATCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab43 ENSRNOG00000037768 ENSRNOT00000013299 2 1 1 97 4 119697260 119697279 AAGAGGAGCACCTTCTTGTC 60 119695469 119697201 TCTGACTTGTTCCCGATCAG 60 NA Rattus norvegicus 81 Olr348 ENSRNOG00000058503 ENSRNOT00000085941 3 1 1 60 1 229889958 229889979 ATCTGTCTTTAGTGGACTTCTG 58 229889997 229890018 AATCCAGCTATGACATTTGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cblb ENSRNOG00000001982 ENSRNOT00000077220,ENSRNOT00000002719 1 2 2 80 11 51060462 51060480 ATCCCATCCTGTTTCCCTG 59 51057586 51060420 TGACCATTATCACAAGACCGA 59 NA Rattus norvegicus 81 LOC100911944 ENSRNOG00000050764 ENSRNOT00000073085 3 1 1 60 8 18051066 18051086 ATTGGACTGACATATGCTCCT 59 18051026 18051046 ATATACACAGGAACAAGCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slamf9 ENSRNOG00000008045 ENSRNOT00000010594 1 1 1 80 13 90838488 90839049 TGCTTCATGAAGCCAAAGG 59 90838426 90838445 GGTTGACAGACTCTTGAAGG 58 NA Rattus norvegicus 81 Slamf9 ENSRNOG00000008045 ENSRNOT00000010594 2 1 1 80 13 90838487 90839048 GCTTCATGAAGCCAAAGGG 60 90838425 90838445 AGGTTGACAGACTCTTGAAGG 60 NA Rattus norvegicus 81 Nrep ENSRNOG00000020467 ENSRNOT00000027739 1 1 1 80 18 26189838 26189856 CCAGAACTCTTGGTCTGGG 60 26185540 26189798 AGGAAGTCTTCCCTTAGTAAGAC 59 NA Rattus norvegicus 81 Nrep ENSRNOG00000020467 ENSRNOT00000027739 3 1 1 80 18 26189840 26189859 TACCCAGAACTCTTGGTCTG 59 26185543 26189801 AAGTCTTCCCTTAGTAAGACCTC 59 NA Rattus norvegicus 81 Emr4 ENSRNOG00000050325 ENSRNOT00000081513,ENSRNOT00000073659,ENSRNOT00000080314 3 3 3 80 9 8158118 8160743 TGGAACATACAACCACTGC 58 8160787 8160805 AAGATAATGGCTGCCACTG 58 NA Rattus norvegicus 81 Mageb7 ENSRNOG00000042751 ENSRNOT00000065450 2 1 1 60 X 54939245 54939269 GATCTACTTAAACAACTACTGTGCC 60 54939209 54939230 TAACATATTCAGGAAGTGCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC682666 ENSRNOG00000039592 ENSRNOT00000060688 1 1 1 90 18 28522915 28524279 GATGATGCACCAGGATGGT 60 28524333 28524351 CATATCAGGGAGCTGCCTC 60 NA InUTR Rattus norvegicus 81 Olr1254 ENSRNOG00000050688 ENSRNOT00000052324 2 1 1 60 8 42381827 42381847 CTGAATTCTCACCTTCACACC 59 42381787 42381811 GGTCTACAAAGGACAAGTTAAAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcna7 ENSRNOG00000020779 ENSRNOT00000028189 1 1 1 175 1 101398795 101398813 GTCATCCTGGTCTCCATCG 60 101400853 101400871 AATGGATCGTTGAAGGGCT 59 NA DesignNoJunction Rattus norvegicus 81 Vom1r12 ENSRNOG00000055538 ENSRNOT00000078350 2 1 1 60 1 60406685 60406704 TGGTCTGGAATTTCAATGGT 57 60406644 60406662 AGATGTGTTGAACCTGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fshr ENSRNOG00000016783 ENSRNOT00000022802 3 1 1 81 6 12895669 12997610 GAACGCCATTGAACTGAGG 59 12895606 12895625 CTCCAGGTCTCCAAATCCAG 60 NA Rattus norvegicus 81 Mzb1 ENSRNOG00000022009 ENSRNOT00000036301 2 1 1 81 18 28437583 28437601 AGGAGCTGAGTGAATCCAC 59 28437202 28437540 ACTTCTTGGACTCCATAGGAC 59 NA Rattus norvegicus 81 Slc6a18 ENSRNOG00000016253 ENSRNOT00000022346,ENSRNOT00000089941 3 2 2 80 1 32224225 32224998 CTCAACAGAACAGGATTTGTG 58 32225039 32225058 AATATTCAAAGTCTGCCGGT 58 NA Rattus norvegicus 81 Slc25a18 ENSRNOG00000042731 ENSRNOT00000015560 1 1 1 84 4 153349079 153349097 GACTCGAATCCAGACCCTC 59 153349145 153349592 CTGGGTCCAGAGTTTCCTG 60 NA Rattus norvegicus 81 Git2 ENSRNOG00000001190 ENSRNOT00000045946 3 1 1 80 12 47627101 47627120 CGCAAGACTGAACAGATCAC 59 47627163 47629449 GGGAATGTAGCTGTCATGC 59 NA Rattus norvegicus 81 Nrg2 ENSRNOG00000019093 ENSRNOT00000028713,ENSRNOT00000025902 3 2 2 82 18 28871730 28871750 TCCTATCGATGGTTCAAGGAC 59 28864786 28871686 GAGTTCTTTCTGCCGTTGC 60 NA Rattus norvegicus 81 Dpy30 ENSRNOG00000027126 ENSRNOT00000087805,ENSRNOT00000039132 1 2 2 80 6 22311420 22316551 CTCGCAAAGGAAAGACCAC 59 22316595 22316613 TCGATCTTCAAACTGTGCC 58 NA Rattus norvegicus 81 AABR07053188.1 ENSRNOG00000031694 ENSRNOT00000041291 1 1 1 60 3 95939357 95939377 TTTATGCCCGAGATGAAACTG 59 95939397 95939417 GCTTTGTACACATAAGCACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss1 ENSRNOG00000032156 ENSRNOT00000040403 1 1 1 102 4 70778235 70778646 CAATGGTGTGAACAACCCAG 60 70778711 70778729 CATGCTGCTGGTGATTTCC 60 NA Rattus norvegicus 81 Fam168a ENSRNOG00000018873 ENSRNOT00000025827 2 1 1 80 1 165854236 165859820 TGCTCCAGAATTTCAGTTCCT 60 165865016 165865035 CAGGAAGAGGAGTTCTGTGG 60 NA Rattus norvegicus 81 Ninj2 ENSRNOG00000010282 ENSRNOT00000013721 1 1 1 80 4 152631349 152731271 TCATCCACCTTCAACACAG 57 152731314 152731333 TCTTCTTGGTGGCATAATGG 58 NA Rattus norvegicus 81 Lrrc72 ENSRNOG00000025049 ENSRNOT00000036996 1 1 2 80 6 55700057 55700076 TCCCAGTATAACCTCTACCG 58 55698773 55700014 CGCTGTAATTTCCTTCCGA 58 NA Rattus norvegicus 81 Actl11 ENSRNOG00000032642 ENSRNOT00000047309 3 1 1 60 8 116709862 116709882 AGCTGATACCCAGATAGTGTC 59 116709903 116709922 CTGGTTATTGATGCCTGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pml ENSRNOG00000008400 ENSRNOT00000043434 2 1 1 81 8 63031841 63031859 ATTCCTCGACAGTACTCGC 59 63020590 63031797 GCAGTAGATGTTAGTCTGCG 59 NA Rattus norvegicus 81 Plcb2 ENSRNOG00000058337 ENSRNOT00000078037 1 1 1 80 3 110507825 110508053 TATCTTGTTCAAGGAAGCAGTC 59 110507766 110507785 TCAAATGACAGGATGACAGG 58 NA Rattus norvegicus 81 Slc25a28 ENSRNOG00000016751 ENSRNOT00000022633 1 1 1 96 1 263422028 263423144 ATATTGCCAATGGTGCAGC 59 263420850 263420868 TTGTACATCTGCATCCGCT 60 NA Rattus norvegicus 81 Rn60_7_0063.2 ENSRNOG00000059341 ENSRNOT00000081851 1 1 1 60 7 6165359 6165379 TTACATCTGCTTGTATCCCTC 57 6165401 6165419 GTGATTGACCTGTCTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mark2 ENSRNOG00000021184 ENSRNOT00000091990,ENSRNOT00000028763 2 2 2 80 1 222534887 222534905 AGGATGACGAGCTAAAGCC 60 222534741 222534845 CCATTGACACCATCAACTCTG 59 NA Rattus norvegicus 81 Grem1 ENSRNOG00000026053 ENSRNOT00000037895 2 1 1 136 3 105206969 105214860 AGGTGACAGAATGAATCGCA 60 105206852 105206870 CATTGTGCTGAGCCTTGTC 60 NA InUTR Rattus norvegicus 81 Dagla ENSRNOG00000027264 ENSRNOT00000037624 3 1 1 80 1 226302867 226302887 ATGAGGTGATCATCTCACCAG 59 226302331 226302826 TCTCCAGCACCTTATTGAGC 60 NA Rattus norvegicus 81 LOC100909911 ENSRNOG00000029341 ENSRNOT00000042264 3 1 1 60 12 40685997 40686016 TCGTTTCCAGATGAGAATCC 57 40685956 40685976 AACAATCTCTGAAGGACTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dzip3 ENSRNOG00000001956 ENSRNOT00000002678 3 1 1 80 11 54463830 54463849 GGCTGCTGTAGATAGTTGGA 59 54463890 54465261 TGTTCATTGTACTGTGTCCTG 58 NA Rattus norvegicus 81 Rn60_X_0625.1 ENSRNOG00000051030 ENSRNOT00000076040 3 1 1 60 X 61839554 61839572 GTCCAGCATAGTCTTGCCT 60 61839592 61839614 GGAATATAGGGAAAGGGAAATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhov ENSRNOG00000013380 ENSRNOT00000079339,ENSRNOT00000018277 3 2 2 123 3 111080188 111080383 CACTTTCTCCGTGCAAGTC 59 111079889 111079908 CAGAAAGACATCGGTATCCG 58 NA Rattus norvegicus 81 Tmem120a ENSRNOG00000001441 ENSRNOT00000001960 1 1 1 80 12 23989987 23991681 GGTATCCAGGAAACACATCG 59 23991719 23991742 GATAGAGTTTGTACAGTTGTCCTG 59 NA Rattus norvegicus 81 LOC100911800 ENSRNOG00000045908 ENSRNOT00000065330 3 1 1 176 20 5283090 5283200 TCACTGGGAAATGCAGGAG 60 5282932 5282951 ACCTCCACAGTTACTCACAG 59 NA InUTR Rattus norvegicus 81 Bivm ENSRNOG00000022894 ENSRNOT00000033133 3 1 1 80 9 50899575 50899593 GACTTCGTGTGGTATCTCC 57 50899637 50900143 ATAGGTGGGAGATTCCCAG 58 NA Rattus norvegicus 81 Saxo2 ENSRNOG00000026296 ENSRNOT00000029244 1 1 2 82 1 144601246 144601264 AAGCCCTAAGGAGAAGGAC 58 144596261 144601200 GATAATCTGACCCGCAGGT 59 NA InUTR Rattus norvegicus 81 Ankef1 ENSRNOG00000005792 ENSRNOT00000007893 2 1 1 80 3 129512314 129513387 GCTATCAACACATCCACAGG 59 129513427 129513448 CAATATGCCTCGAACTAGTTCC 59 NA Rattus norvegicus 81 Rn60_X_0616.1 ENSRNOG00000038235 ENSRNOT00000041226 1 1 1 60 X 60953713 60953734 CAGCCATGTTCCATCATAAGAC 60 60953755 60953773 CTTTCGCTCATGTCCTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abhd10 ENSRNOG00000054334 ENSRNOT00000091756 1 1 1 80 11 60060471 60060951 GACCACAGATACTGGTTGGA 59 60060994 60061012 CTATGACCTTCTCTGGCCG 60 NA Rattus norvegicus 81 Hpn ENSRNOG00000021097 ENSRNOT00000028644,ENSRNOT00000079631 3 2 2 80 1 89538039 89538057 GAGACCCTACTATCGACGA 57 89535302 89537996 GGATGTATTCTGTGAGAGGC 58 NA Rattus norvegicus 81 Hgf ENSRNOG00000007027 ENSRNOT00000009763 2 1 1 80 4 15458504 15458523 CACTGATCCAAACATCCGAG 59 15453842 15458463 CCACGATAACAATCTTGTCCA 59 NA Rattus norvegicus 81 Cpne9 ENSRNOG00000023077 ENSRNOT00000067396,ENSRNOT00000091934 3 2 2 80 4 145246762 145248328 ATGGAGACTATGACAGAACAG 57 145248632 145248650 TGAACTCACCGATGAAGTC 57 NA Rattus norvegicus 81 Mir433 ENSRNOG00000036497 ENSRNOT00000054605 1 1 1 60 6 133712349 133712370 GTGAGCCTGTCATTATTCAGAG 59 133712390 133712409 AGCCCATCATGATCCTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Knstrn ENSRNOG00000009334 ENSRNOT00000012454 1 1 1 80 3 110618758 110622241 GTCCGCAGATACACAAACTC 59 110622278 110622302 GTATGAAGATGTCTAAGCATCTCAG 59 NA Rattus norvegicus 81 Arx ENSRNOG00000053562 ENSRNOT00000089828,ENSRNOT00000083362 2 2 3 65 X 62367013 62367031 GTTCACCAGTTACCAGCTG 59 62367060 62367078 AAGACGTCAGGGTAGTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910672 ENSRNOG00000049310 ENSRNOT00000064455 3 1 1 60 2 115093027 115093047 AGCATTCATGTATCTACAGCC 58 115093067 115093087 TGATGATACTTTCCCTTGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r42 ENSRNOG00000006804 ENSRNOT00000066395 3 1 1 82 5 8916751 8919851 TAGATTCGATTGATGACCTCTC 57 8919892 8919912 GTTAGTGACTTGACTAATGCG 57 NA Rattus norvegicus 81 Pafah1b3 ENSRNOG00000020481 ENSRNOT00000027774 2 1 1 85 1 82165546 82165759 GATGTCTCTGCACCATCGA 60 82165479 82165498 TTAGCTGAACCAAGGAGTCC 60 NA Rattus norvegicus 81 Dcdc2 ENSRNOG00000017511 ENSRNOT00000068021 1 1 1 80 17 41976414 41976437 TTTAAGAGACTACCGTACAGTGAG 60 41974047 41976378 TAGTGAAGAAGCTTTCTGACCA 60 NA Rattus norvegicus 81 RGD735065 ENSRNOG00000000524 ENSRNOT00000086330,ENSRNOT00000000631 1 2 2 80 20 6895719 6898881 TTACCCATGGAGAAGACCT 57 6898924 6898943 TTTGGAAATGGAAGTTGGGT 58 NA Rattus norvegicus 81 Rn60_X_0616.5 ENSRNOG00000051214 ENSRNOT00000076231 1 1 1 80 X 60970443 60970463 CAAAGGTAGAAGAGGTCACTG 58 60970503 60973697 CACATGCTTTCCAATTTCCTC 58 NA Rattus norvegicus 81 Ints9 ENSRNOG00000013459 ENSRNOT00000018071 2 1 1 80 15 48327661 48352121 TGAAACTGTACTGCCTGTC 57 48352163 48352183 AGTCCAACATAATAGTGGTGG 58 NA Rattus norvegicus 81 Prl8a5 ENSRNOG00000016871 ENSRNOT00000090603 3 1 5 81 17 39376122 39377427 CCTCCCTTCTCTGGAACAC 59 39377470 39377490 TACATGCAGGAATTGATGCAG 59 NA Rattus norvegicus 81 AABR07019903.1 ENSRNOG00000040105 ENSRNOT00000061683 2 1 1 80 13 6712701 6712721 GTCTTTGGACTACTGAAGGCT 60 6712599 6712661 CTGTTTCCTTGAATTTCCGGG 60 NA Rattus norvegicus 81 Ppp2r3a ENSRNOG00000022999 ENSRNOT00000010320,ENSRNOT00000087334,ENSRNOT00000087398 2 3 3 80 8 109533483 109541515 ATCCCTCTACTTCAGGATGTG 59 109533423 109533442 GTAGCGGGAATGGAATTCAG 59 NA Rattus norvegicus 81 Dnaja2 ENSRNOG00000016251 ENSRNOT00000022573 3 1 1 80 19 22572188 22577350 GATGCATCCGCTGAAAGTG 60 22577393 22577412 CAGAGCACATTCTTGCTGAG 59 NA Rattus norvegicus 81 Bmf ENSRNOG00000007529 ENSRNOT00000010381 1 1 1 85 3 110307445 110319511 TATGCAACAACACCAGCAG 59 110307378 110307396 TTTCTCGTCTGTTCAAGGC 58 NA Rattus norvegicus 81 Siah2 ENSRNOG00000013703 ENSRNOT00000018488 1 1 1 80 2 148875516 148891255 GTTTCCCTGTAAGTATGCCA 58 148875455 148875474 TCACAGATGTCTTCATGCTC 58 NA Rattus norvegicus 81 Kcnq1 ENSRNOG00000020532 ENSRNOT00000076526 2 1 4 99 1 216295150 216295169 GAGATGCTAGCTCCTGAGTG 60 216295231 216335842 AACAATGAGGAAGCCCTCC 60 NA Rattus norvegicus 81 LOC361635 ENSRNOG00000016063 ENSRNOT00000083863,ENSRNOT00000050393 3 2 2 80 1 188544158 188544177 GGATCTACACCTCTGTCCTG 59 188544217 188547406 TGGAGTCAACTTTGTCTATGTG 58 NA Rattus norvegicus 81 Nsfl1c ENSRNOG00000008604 ENSRNOT00000011654,ENSRNOT00000090211 2 2 2 80 3 146983314 146983333 GGATGAAGACATTGTGACCA 58 146983370 146988575 GTTACTCTATTATCACTAGGAGCTG 58 NA Rattus norvegicus 81 Mir362 ENSRNOG00000036268 ENSRNOT00000054391 2 1 1 60 X 16117174 16117194 AATCCTTGGAACCTAGGTGTG 60 16117213 16117234 TTTGAATCCTTGAACAGGTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sh3bgrl2 ENSRNOG00000009613 ENSRNOT00000084852 2 1 2 121 8 91099565 91099583 CATGTCGGAGGAACAGAGG 60 91099665 91115259 TGTCATAGTCTCCACAGTATCG 59 NA Rattus norvegicus 81 Cyb5r2 ENSRNOG00000019751 ENSRNOT00000026744,ENSRNOT00000079844 1 2 2 80 1 171978923 171978941 CACAACACCAGAAGGTTCC 59 171976641 171978883 GAGATGGACATAGTTACCTACAG 58 NA Rattus norvegicus 81 Ccl25 ENSRNOG00000028531 ENSRNOT00000037059 2 1 1 81 12 2434576 2434689 CGTGCTGTGATATTCTACTTCC 59 2434516 2434534 TCTTCACAGCCCTCTTCAC 59 NA Rattus norvegicus 81 Dock4 ENSRNOG00000004823 ENSRNOT00000006709,ENSRNOT00000075193 3 2 2 80 6 60720773 60720793 TTGGATAGCCTGATGTCAGAG 59 60720829 60726238 GGGACCAAATAGTGGAATTATACTG 60 NA Rattus norvegicus 81 Osbp ENSRNOG00000021057 ENSRNOT00000065411 2 1 1 80 1 228408714 228408733 AACTACAGCCTCAACTTGTG 58 228408776 228412863 AAAGTTTACCGGCATTGGG 59 NA Rattus norvegicus 81 Mrpl10 ENSRNOG00000009567 ENSRNOT00000065555 1 1 2 85 10 84979761 84979821 AGACAAGCTAGGTTGGCTG 60 84979870 84979888 GAAAGTGCATGACTCGACG 59 NA Rattus norvegicus 81 LOC100910077 ENSRNOG00000030000 ENSRNOT00000040297 1 1 1 60 8 42613655 42613677 GAATATACAGAGACCCATTTCCC 59 42613696 42613715 CCGTGATAACATAGATGCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc39d ENSRNOG00000027343 ENSRNOT00000023114 1 1 1 142 6 2886931 2892996 TCAACAGAGCAACACTTCAG 59 2893101 2893119 ATGTCTTTGGTACCGTGAC 58 NA InUTR Rattus norvegicus 81 Rerg ENSRNOG00000027592 ENSRNOT00000030850 1 1 1 87 4 171072453 171072471 ATCAACCTACCGACACCAG 59 171070868 171072402 CTGGATGGTGTCTTCCTGG 60 NA Rattus norvegicus 81 Tmem178a ENSRNOG00000007907 ENSRNOT00000010927 3 1 1 80 6 3657750 3700247 CATCCTGAAAGGTATTGCACAG 60 3700287 3700306 AAAGGAATGTTCCGTAAGCG 59 NA Rattus norvegicus 81 Il12b ENSRNOG00000004380 ENSRNOT00000005898 2 1 1 82 10 30045799 30045818 TCTCCCTCAAGTTCTTCGTC 59 30045863 30047382 CGCACCTTTCTGGTTACAC 59 NA Rattus norvegicus 81 Prl3d1 ENSRNOG00000050920 ENSRNOT00000042298 2 1 1 80 17 39777580 39778348 CTTATACAACAGGACTCAGGC 58 39777520 39777539 AAGTCTTTGAGTCCAGACCA 59 NA Rattus norvegicus 81 Clrn3 ENSRNOG00000028288 ENSRNOT00000080506,ENSRNOT00000031397 1 2 2 80 1 207756471 207756489 TCAGCAACCCTTACCAGAC 59 207752090 207756429 TCAGAAACACAAAGGATGCAC 60 NA Rattus norvegicus 81 Vamp8 ENSRNOG00000012748 ENSRNOT00000017301 3 1 1 100 4 100252666 100252686 ATTATGACCCAGAATGTGGAG 58 100250431 100252604 TTGAAGTGTTCAGACGTGG 58 NA Rattus norvegicus 81 Ppp1r3e ENSRNOG00000014904 ENSRNOT00000019992 2 1 1 133 15 33536975 33536994 TATGATCGGACATAGAGCCG 59 33536861 33536879 TATAAAGCTCAGGTTGCGG 58 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Pate3 ENSRNOG00000046243 ENSRNOT00000074011 3 1 1 82 8 36841020 36842329 CATTGTGGAAGCAACAACAC 59 36840957 36840976 AAACACCAAAGCCTCTTCTG 59 NA Rattus norvegicus 81 Gins1 ENSRNOG00000008091 ENSRNOT00000010955 2 1 1 80 3 146702669 146712150 GCTGAAGAAGTGGAGTGGT 60 146712194 146712212 CAAGCCTTCATCTCCTCCA 59 NA Rattus norvegicus 81 Rpl5l1 ENSRNOG00000037220 ENSRNOT00000056238 2 1 1 60 10 112564606 112564626 CCCATAGTACCAAACGATTCC 59 112564566 112564584 ACCTCTGCATTGAACTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gabra1 ENSRNOG00000003512 ENSRNOT00000004725 3 1 1 80 10 27315424 27320062 ACTGTCTTTGGAGTGACGA 59 27315362 27315380 ATAAGCCACCTTTGGGAGG 59 NA Rattus norvegicus 81 Mir3068 ENSRNOG00000035409 ENSRNOT00000053532 3 1 1 61 6 111468776 111468797 GGAGTTCATGCAAGTTCTAACC 60 111468736 111468757 ATGTTGGAGTACTGCAATTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 N4bp3 ENSRNOG00000045965 ENSRNOT00000075465 3 1 1 132 10 37092764 37093268 CCTTTACTCAGGTGCTCGA 59 37092650 37092668 ATAAACAGCTGCAGCTGGA 60 NA Rattus norvegicus 81 Ptpn6 ENSRNOG00000014294 ENSRNOT00000065416,ENSRNOT00000082739,ENSRNOT00000079947 3 3 3 80 4 157246377 157246685 ACATTCTTCCCTTTGACCAC 58 157246316 157246336 TGGCATTGATGTAATCAGACC 59 NA Rattus norvegicus 81 RGD1311946 ENSRNOG00000025245 ENSRNOT00000034240 1 1 1 60 1 218951898 218951917 TGTGCCCTTATCTAGAAGCC 59 218951935 218952655 CTTATTAGTGACTAAGTGTCGTGG 59 NA DesignRelaxed Rattus norvegicus 81 U2af1 ENSRNOG00000045860 ENSRNOT00000074081 3 1 1 80 20 10404571 10407461 GCACCGAGAAAGACAAAGTC 60 10404510 10404528 GCAACCGAGAACATCTGTC 59 NA Rattus norvegicus 81 LOC103693060 ENSRNOG00000052550 ENSRNOT00000088406 1 1 1 60 8 43497291 43497311 GAGACTCTACTCTTTGTGGTG 58 43497251 43497270 GTGAATTTCCAAGCAAGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srp19 ENSRNOG00000020204 ENSRNOT00000027418 3 1 1 81 18 27119209 27119228 TATAGAGGCAGAGTTCGGGT 60 27119272 27120624 TCACCGACTTACGTGATGG 60 NA Rattus norvegicus 81 Cblc ENSRNOG00000018953 ENSRNOT00000025829,ENSRNOT00000092048 1 2 2 80 1 80710175 80710194 GCATCCTACAGACCATTCCT 59 80708334 80710132 GGTAGAGGAAGATGCCGTC 60 NA Rattus norvegicus 81 Cblc ENSRNOG00000018953 ENSRNOT00000025829,ENSRNOT00000092048 2 2 2 80 1 80708308 80708327 GAAAGAACCACAACCCAGAC 59 80706244 80708265 GCAGTTGTTCCTGTGACAC 59 NA Rattus norvegicus 81 Aldh5a1 ENSRNOG00000023538 ENSRNOT00000031384 2 1 1 81 17 42140860 42140878 TGCTCCGTAAATGGTACGA 59 42140923 42142292 AGTGGCTTTCCACTCTCAG 59 NA Rattus norvegicus 81 C3 ENSRNOG00000046834 ENSRNOT00000073042,ENSRNOT00000075494 3 2 2 80 9 9744981 9745000 TGCATCAGTCACAGGATCAG 60 9745041 9746516 TCTTGTACACGTAGTCCACTC 59 NA Rattus norvegicus 81 RGD1310352 ENSRNOG00000006148 ENSRNOT00000008119,ENSRNOT00000087555 1 2 2 90 10 37757310 37764327 CTGTGCTATGGTATACCAGAG 58 37764379 37764397 GGGAAACAGAAGGTTTGGT 58 NA Rattus norvegicus 81 Zfand5 ENSRNOG00000018107 ENSRNOT00000024583 1 1 1 84 1 238850397 238850982 CCTTACAGGGTTTGACTGC 59 238851027 238851048 GTAATCATAAGGACAGTTGTGC 58 NA Rattus norvegicus 81 Hoxd4 ENSRNOG00000001578 ENSRNOT00000002145 2 1 1 80 3 61649633 61650206 ATGTGAATTCGGTGAACCC 58 61650250 61650268 CTAGGACTTGCTGTCTGGT 59 NA Rattus norvegicus 81 Exoc7 ENSRNOG00000009617 ENSRNOT00000013281 1 1 1 80 10 105243228 105243247 AATCTACCTGTGTTCCAGCC 60 105242682 105242973 ATTGAATCCCTTGAAACGTTCC 60 NA Rattus norvegicus 81 Svs5 ENSRNOG00000013834 ENSRNOT00000018537 1 1 1 105 3 160714571 160715143 AATAGGCAGGTTGTCCTCG 60 160715212 160715230 GAAGCACGGACTATTTCCG 59 NA InUTR Rattus norvegicus 81 Asna1 ENSRNOG00000003747 ENSRNOT00000067518 2 1 1 80 19 26135200 26140046 CCTCTTTGCTATGGAGATAGAC 58 26135141 26135159 CTCAGCATGTTGTCTTCCT 58 NA Rattus norvegicus 81 Bnc1 ENSRNOG00000019770 ENSRNOT00000067423 2 1 1 80 1 143803724 143803744 ATGAGGTTCTACAGATCCTCC 59 143801678 143803682 CTGAGGCATCCTGTAACAC 58 NA Rattus norvegicus 81 Sox30 ENSRNOG00000006098 ENSRNOT00000007978 2 1 1 81 10 31075253 31076905 CCTCAGATGCAGGAATACCT 59 31076946 31076967 ACCATAAATGCATTCATGGGTC 60 NA Rattus norvegicus 81 Trib3 ENSRNOG00000007319 ENSRNOT00000009840 2 1 1 110 3 147815943 147815962 TTTCCGACAGATGGCTAGTG 60 147814738 147815870 ACCAACTTCGTCCTCTCAC 59 NA Rattus norvegicus 81 Asphd2 ENSRNOG00000061004 ENSRNOT00000079190,ENSRNOT00000086782 3 2 2 87 12 50273628 50273646 ATCTCAGTGCTGAGTCCTG 59 50273696 50277578 GAGTCTTCAGACCTAGGTGG 59 NA Rattus norvegicus 81 Igsf8 ENSRNOG00000007604 ENSRNOT00000010028 1 1 1 88 13 90693482 90696895 TAATACTTGGAGCCAGGTGC 60 90696946 90696964 GGAGATAGAGACAGCGGTG 59 NA Rattus norvegicus 81 Rundc3a ENSRNOG00000020970 ENSRNOT00000089616 3 1 2 171 10 90349330 90349447 CAAGCTATTTCGGAGACACAG 59 90350650 90350668 GTTGGATTTGAAGCTCGCC 60 NA InUTR Rattus norvegicus 81 Olr208 ENSRNOG00000045631 ENSRNOT00000051962 2 1 1 60 1 170743584 170743602 TACTCCTCCTGGTCATCAC 58 170743542 170743561 CAGAGCAGAAGATACATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrr1 ENSRNOG00000004216 ENSRNOT00000005595 1 1 1 80 6 91466088 91466106 CCAAATTTGTGGACGAAGG 57 91466150 91468535 CAGGATTGGCCTTACTCAG 58 NA Rattus norvegicus 81 Nefm ENSRNOG00000013916 ENSRNOT00000018637 1 1 1 80 15 44858608 44858627 CGTCATTTGCGAGAATACCA 59 44857127 44858568 CAGTAGTTTCCTATATGGGCGA 60 NA Rattus norvegicus 81 Olr1405 ENSRNOG00000047313 ENSRNOT00000044464 1 1 1 61 10 36478555 36478573 CTACAGCCTGAGGAACCAG 60 36478593 36479036 GGTAGGATCTGAGAATTATCTTCC 58 NA DesignNoJunction Rattus norvegicus 81 Olr1405 ENSRNOG00000047313 ENSRNOT00000044464 2 1 1 61 10 36478555 36478573 CTACAGCCTGAGGAACCAG 60 36478592 36479036 GGTAGGATCTGAGAATTATCTTCCT 60 NA DesignNoJunction Rattus norvegicus 81 Vom2r46 ENSRNOG00000030104 ENSRNOT00000031015 3 1 1 84 2 154762875 154762894 TGCAATTATTGGAGCAGGAG 58 154761605 154762829 ATAGCCCACCTGAAGTACAC 59 NA Rattus norvegicus 81 Wdr5 ENSRNOG00000008212 ENSRNOT00000011556 1 1 1 80 3 6068069 6068090 AGGATATGGGATGTGAAGACAG 60 6068129 6071524 ATTGAAATGAACGGCTGAGAC 59 NA Rattus norvegicus 81 Mir222 ENSRNOG00000035581 ENSRNOT00000053704 1 1 1 60 X 3683947 3683966 TAGCCAGTGTAGATCCTGTC 58 3683989 3684007 ATCAGAGACCCAGTAGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563917 ENSRNOG00000017273 ENSRNOT00000029635 3 1 1 80 9 92764464 92764485 TTAACAGAGTGAACCTGAAGGA 59 92762120 92764425 AGTATCTGTCCTGTAGCTCAG 59 NA Rattus norvegicus 81 Sh3gl3 ENSRNOG00000019776 ENSRNOT00000026870,ENSRNOT00000079989 1 2 2 80 1 144176520 144176538 CGGCGTTAGACTATCACAG 58 144176582 144177622 ATGCAAGAGCTATTCGCAG 58 NA Rattus norvegicus 81 Sh3gl3 ENSRNOG00000019776 ENSRNOT00000026870,ENSRNOT00000079989 3 2 2 80 1 144176521 144176539 GGCGTTAGACTATCACAGG 57 144176583 144177623 GATGCAAGAGCTATTCGCA 58 NA Rattus norvegicus 81 Uqcrq ENSRNOG00000048174 ENSRNOT00000073964 2 1 1 81 10 38782195 38782214 TATTTCAGCAAAGGCATCCC 59 38780339 38782151 AGAACAGTACAAATGGCGG 58 NA Rattus norvegicus 81 Gfi1b ENSRNOG00000011353 ENSRNOT00000015236,ENSRNOT00000078428 3 2 2 90 3 7194091 7194920 AGTGTAACAAGGTGTTCTCCA 59 7194021 7194039 CAGATGTCACAGGCAAAGG 59 NA Rattus norvegicus 81 Btla ENSRNOG00000030246 ENSRNOT00000050092,ENSRNOT00000083124 3 2 2 80 11 60546931 60546953 GGAATTCTTCATCCTTCTTCTGG 59 60536370 60546891 ACTCTGCATTCTTCACCGA 59 NA Rattus norvegicus 81 Ccnt1 ENSRNOG00000053054 ENSRNOT00000088999 2 1 1 80 7 140224537 140227774 CAACTTGTTCGAGCAAGCA 59 140222845 140222865 GCTAAATGTGGTCAAATGCAG 59 NA Rattus norvegicus 81 Rai2 ENSRNOG00000006670 ENSRNOT00000008703 3 1 1 186 X 34794510 34794528 GTGACAGCAAAGACAGAGG 59 34734207 34734226 ATTGAAAGGTTCTGGGACTG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Luc7l3 ENSRNOG00000002835 ENSRNOT00000003914 3 1 1 84 10 82005553 82014908 TCTGACCTTGGTCCATGTG 59 82003708 82003728 AGCCAACTTTCATAAACCGAG 59 NA Rattus norvegicus 81 AC120727.2 ENSRNOG00000051858 ENSRNOT00000072444 1 1 1 60 X 1601075 1601094 GGCTTCTGTTACGAGATGAG 58 1601113 1601135 CCTGAATAATGACGTTGATAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563323 ENSRNOG00000026579 ENSRNOT00000036769 2 1 1 82 1 219894211 219894229 AGGGCAGAGAATGAACCTG 59 219893335 219894168 TGTGGTTTACTGACATAGTGCT 60 NA Rattus norvegicus 81 Xpo4 ENSRNOG00000010137 ENSRNOT00000013901 1 1 1 80 15 37845015 37845736 GGAATGACATCAATGAGTTCAG 58 37844956 37844975 TGCTTTAGCACATTGTTCAG 57 NA Rattus norvegicus 81 Fmo13 ENSRNOG00000043014 ENSRNOT00000066609 3 1 1 83 13 84688942 84688960 GATCAACAGATGGGCAGAG 58 84686722 84688897 CTGAGAAATCTGTGTTTAGCC 57 NA Rattus norvegicus 81 Shc1 ENSRNOG00000020657 ENSRNOT00000056652,ENSRNOT00000028038 3 2 2 81 2 188753600 188753618 TAGGGCAGCATGTTACAGG 60 188753663 188753761 TCGAAGAGTTCTCTGCCTG 59 NA Rattus norvegicus 81 Ttc39b ENSRNOG00000042603 ENSRNOT00000058611 3 1 1 80 5 101346824 101346842 TCACTTTGTACCGTGTGAC 58 101339968 101346780 GCTGATGAACCTTCTGCTC 59 NA Rattus norvegicus 81 Prop1 ENSRNOG00000003671 ENSRNOT00000004872 2 1 1 88 10 36451054 36451072 TTGGGAGGAACCAGTATCC 58 36450250 36451002 GAACCAGACCTGGATTCTG 58 NA Rattus norvegicus 81 AABR07035089.1 ENSRNOG00000047146 ENSRNOT00000042410 3 1 1 93 12 4249088 4249753 TGAAGAAACTGACCATTGGG 58 4249807 4249827 AGATACATGTCCTTGTAGGCT 58 NA Rattus norvegicus 81 LOC100910467 ENSRNOG00000048445 ENSRNOT00000074937 2 1 1 60 2 115125992 115126013 TTATTGATCTCTGCCATTCCAC 59 115126034 115126052 TCTGCCACAAAGTTCACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp958 ENSRNOG00000030410 ENSRNOT00000050885 1 1 1 81 12 5487195 5490652 AGAAGACACGGAAGACCTG 59 5487132 5487150 GATGTGCAAAGGCTTCACC 60 NA Rattus norvegicus 81 RGD1561215 ENSRNOG00000050763 ENSRNOT00000070906 2 1 1 80 4 155010709 155010729 TCTAGTCTGAAGTTCTGTGCA 59 155010770 155015538 CTTCTGCAACACGTTCACTC 60 NA Rattus norvegicus 81 Rn60_20_0009.4 ENSRNOG00000053949 ENSRNOT00000092227 2 1 1 60 20 1546978 1546997 CCTTGGTAACTCCCACTCTG 60 1546937 1546961 CTCTTAACATCCCTATTTCTCAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fcgr3a ENSRNOG00000024382 ENSRNOT00000047434,ENSRNOT00000086223 3 2 2 80 13 89392369 89395472 AAGCATAGGAGATCCGACG 59 89395514 89395534 AACAAGAGTCCTATCAGCAGG 60 NA Rattus norvegicus 81 Fnip1 ENSRNOG00000009104 ENSRNOT00000012671 3 1 1 80 10 39852046 39852069 ACAGACTCATCCATATAACCCT 58 39853473 39853491 CTTGCTAACCGTACTGGAG 58 NA Rattus norvegicus 81 Tead1 ENSRNOG00000015488 ENSRNOT00000021020,ENSRNOT00000090042 2 2 2 80 1 177667426 177668226 CAAGCATGGATCAGACTGC 59 177668270 177668288 CGGTAGCTGAGACGATCTG 60 NA Rattus norvegicus 81 Gucy1b2 ENSRNOG00000009440 ENSRNOT00000081912,ENSRNOT00000087678,ENSRNOT00000012948 3 3 3 80 15 45505721 45505739 ATCCAGAACCTGAATGCCA 59 45503368 45505679 GGGAGTACATACTTCCTTCCC 59 NA Rattus norvegicus 81 Rn60_3_0729.2 ENSRNOG00000055145 ENSRNOT00000077283 3 1 1 60 3 66296067 66296086 CCTACACTTCTTCAAGCCTG 58 66296108 66296127 CACTATACTGCTGACTGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Drd3 ENSRNOG00000060806 ENSRNOT00000089057 2 1 1 80 11 61855506 61873990 TGGTGTACTTGGAGGTGAC 59 61855444 61855462 TCATGACATCCAGGGTGAC 59 NA Rattus norvegicus 81 Ranbp3 ENSRNOG00000049785 ENSRNOT00000072911,ENSRNOT00000072009 2 2 3 80 9 10369877 10369897 CCGTCTTTGTGTTTCAGAAGG 60 10359324 10359418 GATCAGAGTCTTCTCCGGC 60 NA Rattus norvegicus 81 Ddx56 ENSRNOG00000004670 ENSRNOT00000089384,ENSRNOT00000006642 2 2 2 81 14 86384633 86384651 CACAGACGCAGAAATCCTG 59 86383990 86384589 AGGATCAGATGCCTTGTCTC 59 NA Rattus norvegicus 81 LOC100911854 ENSRNOG00000050305 ENSRNOT00000072188 2 1 1 80 1 248728138 248728860 GAGCTATGAGAAAGTGGGTG 58 248728902 248728921 GCATCCTTCTAACACTGCTC 59 NA Rattus norvegicus 81 Slc32a1 ENSRNOG00000015393 ENSRNOT00000020720 1 1 1 77 3 155103619 155105724 CATTCAGGGCATGTTCGTG 60 155105764 155105783 AAGATGATGAGGAACAACCC 58 NA DesignNoJunction Rattus norvegicus 81 Arhgef7 ENSRNOG00000012934 ENSRNOT00000043449,ENSRNOT00000017947 2 2 2 80 16 83032496 83032516 GGATGACATAAAGACGTTGGG 59 83030168 83032455 TCATTCTTCTCCTCGCTTCC 60 NA Rattus norvegicus 81 Fbxo4 ENSRNOG00000015622 ENSRNOT00000020925 1 1 1 80 2 53807332 53807353 TTGAGTTTGATGTCTTCTGAGG 58 53803560 53807292 GACTCCAGATCCAATACCGT 59 NA Rattus norvegicus 81 Tmem199 ENSRNOG00000009896 ENSRNOT00000013220 1 1 1 80 10 65778168 65778191 CGGCTAGAGAAGATTAAGATACAG 59 65777290 65778129 CTGTGCATCCTGACAAGTG 59 NA Rattus norvegicus 81 Olr1164 ENSRNOG00000030965 ENSRNOT00000047442 2 1 1 60 8 20213454 20213473 ACAGTGATGCCCTATGACAG 60 20213493 20213514 GAATGACTTGGTAGTGTAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1356 ENSRNOG00000039773 ENSRNOT00000061019 3 1 1 60 10 11942236 11942255 CTAAGCATCATCCTGGTCTC 58 11942195 11942213 CAGAGCGGATCTTCATCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tssk6 ENSRNOG00000020599 ENSRNOT00000027953 1 1 1 60 16 21273978 21273996 TGTGCTCTACGTCATGGTC 60 21273936 21273954 TAGACCAGCAATGTCCGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tssk6 ENSRNOG00000020599 ENSRNOT00000027953 3 1 1 60 16 21274124 21274142 CTCACGGATTTCGGTTTCG 59 21274082 21274100 AGTAGGTAGTGCTCAGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 P2rx5 ENSRNOG00000019208 ENSRNOT00000026156 2 1 1 80 10 59731220 59731505 AAGTTCAACTTCTCCAAAGCC 59 59731546 59731565 ATTTGTGGAGCTGAAGTGAC 59 NA Rattus norvegicus 81 Etfdh ENSRNOG00000009538 ENSRNOT00000013262 1 1 1 80 2 178385310 178385329 TGCTGTACCTCAGATTACCA 58 178384667 178385269 CTCTCCATATTCACTCCTTCC 57 NA Rattus norvegicus 81 Fam124a ENSRNOG00000009802 ENSRNOT00000045833 2 1 2 83 15 45747481 45777987 AAGATCCTTCTGCAGGCTC 60 45778033 45778052 ATGAGGCTTCTTCTCAGAGG 59 NA Rattus norvegicus 81 Smc3 ENSRNOG00000014173 ENSRNOT00000019560,ENSRNOT00000054686 1 2 2 80 1 274350256 274350425 GGATCAGGGTATCATTTACAGGA 60 274350465 274350483 CTACCAGAGACTTCTGCCC 59 NA Rattus norvegicus 81 Nvl ENSRNOG00000003629 ENSRNOT00000004927,ENSRNOT00000086888 1 2 2 80 13 99458244 99459399 GATCCACAGTCAGCAAATCAC 60 99458184 99458205 AGTGGTTGAAACAGAATCAGAG 59 NA Rattus norvegicus 81 Ube2q2l ENSRNOG00000023261 ENSRNOT00000035153 1 1 1 60 X 10771981 10772000 GAGATATACAGGTCGCAGAG 57 10771940 10771960 TGTCGTTTATCAGTTCCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trub2 ENSRNOG00000043189 ENSRNOT00000064638 3 1 1 80 3 8348650 8348668 GCTGTCTATAAACCTCCGG 57 8347700 8348607 TGCATTGAGACCTTTAAGCA 58 NA Rattus norvegicus 81 RGD1560146 ENSRNOG00000026169 ENSRNOT00000077492,ENSRNOT00000036030 1 2 2 80 5 115350462 115350480 GTGTAGACTGCCTCAACCT 59 115343914 115350420 TAGACATGATCTTGGGCAGAG 59 NA Rattus norvegicus 81 Gcg ENSRNOG00000005498 ENSRNOT00000007356 3 1 1 81 3 48446684 48446704 CTACAGCAAATACCTGGACTC 58 48445055 48446641 AATGTTGTTCCGGTTCCTC 58 NA Rattus norvegicus 81 Olr722 ENSRNOG00000006669 ENSRNOT00000008715 3 1 1 60 3 78748622 78748642 AACTTCCTTCTTCTGTTGGTC 58 78748663 78748682 CACTGTGGTTCTTTAGGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102553763 ENSRNOG00000029490 ENSRNOT00000024639 1 1 1 80 1 198794434 198794727 TCTCAAAGGCAACACAAGTG 59 198794373 198794397 GGTATTTCTTCAACTTCATAGTCCC 60 NA Rattus norvegicus 81 Cdk15 ENSRNOG00000022899 ENSRNOT00000071819 2 1 1 80 9 66131574 66147982 CCAGCTTCCTGATGAGGAG 60 66148026 66148044 TAGGAGGCAGAAAGGTCAC 59 NA Rattus norvegicus 81 AABR07037960.1 ENSRNOG00000003588 ENSRNOT00000004806 1 1 1 60 X 36280228 36280249 GAAGGAGCTGCACATTAATCTC 60 36280171 36280192 GGTCATTCCAATACCAGTATCC 58 NA DesignNoJunction Rattus norvegicus 81 Inpp5a ENSRNOG00000017635 ENSRNOT00000054890 3 1 1 81 1 211900183 211900296 GACAATGACCGTAAGGTCG 58 211900341 211900359 CATTGTTGTCCCGGAAGAC 59 NA Rattus norvegicus 81 Gemin6 ENSRNOG00000027332 ENSRNOT00000037739 1 1 1 80 6 2908168 2910748 CAGTCTCTGCCAACATTGTC 59 2910788 2910809 GCACAGAATGTCCCATAATTCC 60 NA Rattus norvegicus 81 Gemin6 ENSRNOG00000027332 ENSRNOT00000037739 2 1 1 81 6 2908114 2908133 TGAGAGTGATAGCCAGTGAG 59 2908177 2910756 TTCACGAGGACAATGTTGG 58 NA Rattus norvegicus 81 Ubd ENSRNOG00000000768 ENSRNOT00000079061 1 1 2 113 20 1897381 1897399 TTCATATCCGGACTCCAGC 59 1876759 1897304 AATGGACAACCTGAGAGCC 60 NA Rattus norvegicus 81 Ift57 ENSRNOG00000001958 ENSRNOT00000002684 3 1 1 81 11 53731577 53731595 AGTGGAGAAGCTGAAGCTG 60 53729118 53731532 AAAGTAGTGTCTGGACGGG 59 NA Rattus norvegicus 81 RGD1566085 ENSRNOG00000049970 ENSRNOT00000051678 1 1 1 80 20 10900521 10900540 GAACTCCAAGCTCATGTACG 59 10898136 10898830 GGAAAGGGACAGAACATGG 58 NA Rattus norvegicus 81 LOC102549817 ENSRNOG00000051152 ENSRNOT00000076994,ENSRNOT00000076656 2 2 2 81 7 9826344 9826364 GATCCTTCCCAGAAGAATCTC 58 9826088 9826304 CTTCCCATTTACACCCTATACC 58 NA Rattus norvegicus 81 Agbl5 ENSRNOG00000008612 ENSRNOT00000011635 1 1 1 80 6 26854290 26854309 CTACGAGTTCAACGTATGGA 57 26854020 26854249 CTGAAGTAGAACCATGACCTG 58 NA Rattus norvegicus 81 Ube2ql1 ENSRNOG00000034075 ENSRNOT00000041762 1 1 1 252 1 36187082 36187100 CCTTCCCGGATAACTTCCC 60 36225024 36225042 AAGGTTGCTTCAGCTTCCT 60 NA DesignNoJunction Rattus norvegicus 81 Olr1388 ENSRNOG00000046425 ENSRNOT00000041536 2 1 1 60 10 34564412 34564430 TGATGCACCCTGTTCTCTG 60 34564454 34564472 TTCAAGAAGCCTCCTACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Upk1b ENSRNOG00000027380 ENSRNOT00000004315 1 1 1 80 11 64536217 64537207 CACGTGATTGTTGGTATGTG 58 64537250 64537268 TGGATAAAGGCTGTGTTGG 58 NA Rattus norvegicus 81 Olr1069 ENSRNOG00000033263 ENSRNOT00000044882 1 1 1 60 7 9464846 9464865 TGCCTACATCCTTTCCACTG 60 9464805 9464823 GAAGGTCTTACTCCTGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0009.3 ENSRNOG00000054154 ENSRNOT00000090533 1 1 1 60 20 1516174 1516192 CTTTGCTTCATCACCACCA 58 1516132 1516150 ATCCATCTCCAGTCCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snx18 ENSRNOG00000010971 ENSRNOT00000066764 2 1 1 81 2 45479088 45479106 CATGGACCTGTTAGCACTG 58 45457402 45479045 TTTGGTAAGAGCTCCTTTCTG 58 NA Rattus norvegicus 81 AABR07049320.1 ENSRNOG00000047792 ENSRNOT00000072724 3 1 2 237 5 116963697 116964552 AAGGAAAGAAATGGTGCGG 59 116964752 116964771 CTCAAGGCAGATTGCTTTGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC689899 ENSRNOG00000030614 ENSRNOT00000040647 1 1 1 60 14 24129782 24129800 ATCCTCGAAAGAGTGCACC 60 24129819 24129842 GGGAATTTGATGATAGCATAGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Magee1 ENSRNOG00000002660 ENSRNOT00000003573 3 1 1 60 X 76085229 76085250 AAGTACCCTATCAAGGAATCTG 57 76085270 76085289 ACTGGTTGCGATATTCTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lnp1 ENSRNOG00000039649 ENSRNOT00000066008 2 1 3 81 11 45888335 45888353 CACCGACTACAAGAAGCGA 60 45899630 45900828 CACAATGATGGATCTTTCTCAGG 60 NA Rattus norvegicus 81 Tyr ENSRNOG00000016421 ENSRNOT00000021971 2 1 1 80 1 151097514 151097536 GAGTTTGACCCAGTATGAATCTG 59 151076303 151097474 CTGGCAAATCCTTCCAGTG 59 NA Rattus norvegicus 81 Mir592 ENSRNOG00000036461 ENSRNOT00000054571 2 1 1 60 4 55182414 55182433 GATGATGTGTTGTGATGGCA 59 55182373 55182393 TGTCTTACGTCATGATGTTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1417 ENSRNOG00000047803 ENSRNOT00000047037 3 1 1 60 10 43997755 43997777 GCTATCTATAACTACATGCTCCC 58 43997717 43997735 ACACCACCATGTCCTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asgr2 ENSRNOG00000030726 ENSRNOT00000065370,ENSRNOT00000064064,ENSRNOT00000087121 3 3 3 90 10 56715631 56715905 TTTCATCCCAAAGCATGCA 58 56715959 56715977 TTGAACTCCATCAGGGTGG 59 NA Rattus norvegicus 81 RGD1564698 ENSRNOG00000030106 ENSRNOT00000040278 2 1 1 60 10 19715587 19715607 ACATTTCTACTGGTACCTCAC 57 19715547 19715565 TAGGTGCAGGTAATCTCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbp7 ENSRNOG00000015850 ENSRNOT00000021348 2 1 1 81 5 166280680 166280701 CACTTGTGTACAGAAAGGAGAG 59 166278445 166280638 GAACATTTCCAGGTGGAGC 59 NA Rattus norvegicus 81 RGD1307155 ENSRNOG00000021615 ENSRNOT00000037381 2 1 2 112 10 15242587 15242605 ACTTTGACCTGACCCTCAG 59 15242779 15242868 CATGTCCACCATCCTTTCC 58 NA Rattus norvegicus 81 Esyt3 ENSRNOG00000022704 ENSRNOT00000017658 3 1 1 80 8 107565304 107565739 GGTGGATGAGTGGTTTGTC 59 107565242 107565260 TCAGTGAGTAGTGAGAGCC 58 NA Rattus norvegicus 81 Sdr16c5 ENSRNOG00000008871 ENSRNOT00000011813,ENSRNOT00000085041 2 2 2 80 5 16913699 16913717 AACAACCATGGCCATTTGG 59 16909787 16913657 ACTTGCACAATAGTCTGACAG 58 NA Rattus norvegicus 81 Kdm4d ENSRNOG00000045905 ENSRNOT00000071532 3 1 1 60 8 13511923 13511942 AGAGATGACAGAAGTCCCAG 59 13511882 13511902 CTATTAAGTCTCCAGTCACGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csnk1g3 ENSRNOG00000016677 ENSRNOT00000022792 3 1 1 80 18 48865663 48865681 CCCATGAAATCCAGAGCAC 59 48865724 48868856 AGAGGAAATGCCATCTCCAG 60 NA Rattus norvegicus 81 Alg2 ENSRNOG00000006369 ENSRNOT00000008913 1 1 1 81 5 63191649 63191667 GCTCTACGTGCTGTTTCTC 59 63190051 63190069 TTTGAACACAGGGATGCAG 58 NA DesignNoJunction Rattus norvegicus 81 Alg2 ENSRNOG00000006369 ENSRNOT00000008913 3 1 1 82 5 63191649 63191667 GCTCTACGTGCTGTTTCTC 59 63190050 63190068 GTTTGAACACAGGGATGCA 59 NA DesignNoJunction Rattus norvegicus 81 Retnlb ENSRNOG00000032187 ENSRNOT00000046890 1 1 1 80 11 54565725 54566260 TCCTGTTGGGATGGTTGTC 60 54565663 54565681 TGGCAAGTAGTTCCATCCC 59 NA Rattus norvegicus 81 Dync1li2 ENSRNOG00000025791 ENSRNOT00000076353 2 1 4 64 19 758388 759995 ACAGCCAAGAAGTCAGGAC 60 760019 760041 GTCATTCTATCCAGTTCTTCCTG 59 NA DesignNoJunction Rattus norvegicus 81 Adra1a ENSRNOG00000009522 ENSRNOT00000012736 1 1 1 89 15 43300268 43391905 TAGTGATGCCCATTGGGTC 60 43391955 43391976 AACTATTTAGATACCCGAGCCA 59 NA Rattus norvegicus 81 Gpr62 ENSRNOG00000022567 ENSRNOT00000033018 3 1 1 98 8 115167418 115167436 GTTTATCCTGGCGGTTCTC 58 115167338 115167356 TAGAAGGCATCTTGCAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Robo3 ENSRNOG00000030016 ENSRNOT00000064141 1 1 1 80 8 39904347 39904367 AACGTGTCTTTCCAATGTGAG 59 39902586 39904305 AAGCAAGACTTGACTCCCT 59 NA Rattus norvegicus 81 RGD1565611 ENSRNOG00000025287 ENSRNOT00000035948 1 1 1 60 10 64175218 64178041 GAGACGCAGATAAACATCACAG 60 64178061 64178080 TGGAAAGATGAAGAAAGCGG 59 NA DesignNoJunction Rattus norvegicus 81 Mcm6 ENSRNOG00000003703 ENSRNOT00000004969 2 1 1 80 13 45049432 45051303 GATGAGTGCAATGAGGTGAC 59 45049371 45049392 GTCTATCGATTCTTCGATCCTC 58 NA Rattus norvegicus 81 Grifin ENSRNOG00000001251 ENSRNOT00000001686 3 1 1 112 12 16170778 16171642 CCTTTGAGGTGGAGGTGAG 60 16171718 16171736 CACTCTGGTGATGGTAGCT 59 NA Rattus norvegicus 81 LOC688176 ENSRNOG00000017329 ENSRNOT00000023259 1 1 1 83 14 82353911 82353929 CTCAAACCTACCTGTGCAG 58 82353972 82354406 GAGTTCAGCCTAATATCAAAGGG 59 NA Rattus norvegicus 81 AABR07033745.3 ENSRNOG00000057967 ENSRNOT00000041089,ENSRNOT00000042713 1 2 2 82 11 38677393 38677411 AGAAGGAAATGTCAGCCTG 57 38675164 38677349 ACACATCTCCATGTTTGTCTC 58 NA Rattus norvegicus 81 Glo1 ENSRNOG00000000541 ENSRNOT00000000650 3 1 1 87 20 9279849 9283068 TCTTGGACTGACGCTTCTC 60 9279780 9279802 GATATCGTTCTTATCCTCGTACG 59 NA Rattus norvegicus 81 Fsbp ENSRNOG00000015004 ENSRNOT00000020245 3 1 1 65 5 25168668 25172435 GTACAAACTTGGATGAGGCT 58 25172463 25172481 GATGGTGATCCACCATCAC 58 NA DesignNoJunction Rattus norvegicus 81 Nthl1 ENSRNOG00000012213 ENSRNOT00000016490 1 1 1 81 10 14002447 14002466 GTGGACCAAGAAGATGACCA 60 14002510 14002604 CTCACTCCATAGCACCCTG 60 NA Rattus norvegicus 81 Pcdhga2 ENSRNOG00000034126 ENSRNOT00000043154 3 1 1 60 18 30816634 30816654 CCTACATCTCCATCAACTCTG 58 30816676 30816694 TCATAGTCAAAGGAGCGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scn3b ENSRNOG00000057221 ENSRNOT00000087022 1 1 1 80 8 44137283 44145429 CTACTGGGTCAGAGTCTGC 59 44145472 44145491 AGCTTCATGGGATTACCCTG 60 NA Rattus norvegicus 81 Olr1739 ENSRNOG00000052839 ENSRNOT00000084853 3 1 1 60 20 1810016 1810040 GTCTGAGAAATAGGGATGTTAAGAG 59 1810057 1810076 TGAGACTTCTCCATGTTCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csnk2a1 ENSRNOG00000005276 ENSRNOT00000007558 1 1 1 80 3 147747161 147749610 ATGAGCACAGAAAGCTTCG 59 147749650 147749672 CAACTCGGACATTATACTCTTGG 59 NA Rattus norvegicus 81 Serpinf1 ENSRNOG00000003172 ENSRNOT00000004313 1 1 1 85 10 62242109 62242371 GGACATGAAGCTACAGTCCT 59 62242043 62242061 TGTGTTCCACTTGGGTGAG 60 NA Rattus norvegicus 81 Josd2 ENSRNOG00000019442 ENSRNOT00000026379 3 1 1 81 1 100474513 100476134 AAATCTGCAAGAGGCTAGC 58 100476178 100476197 ACGTTGACATCATAGTTGCC 59 NA Rattus norvegicus 81 Icam2 ENSRNOG00000025143 ENSRNOT00000035474 2 1 1 82 10 94571179 94572448 ATCAGGGTGTATGAGCCTC 59 94571115 94571133 TCAATGGTGAAGGCTTCAC 58 NA Rattus norvegicus 81 LOC100910428 ENSRNOG00000050475 ENSRNOT00000073232 2 1 1 94 4 133540708 133540726 TGGAAGGAAGGTGATGAGC 59 133540780 133541072 TCATATTGACCAGGCAGATAGAG 60 NA Rattus norvegicus 81 Dusp23 ENSRNOG00000022143 ENSRNOT00000030449 1 1 1 67 13 91019614 91019632 TGTGAAGATCGTGGACGAG 60 91018825 91018843 CAAAGCCTAGAGCACAGTG 59 NA DesignNoJunction Rattus norvegicus 81 Ackr4 ENSRNOG00000011478 ENSRNOT00000015265 2 1 1 81 8 112645477 112646676 TTGGACAAACAGTTGCTTGG 60 112645415 112645433 AGTTCATCTCGGTGTCCTC 59 NA Rattus norvegicus 81 Tlk1 ENSRNOG00000009300 ENSRNOT00000076281,ENSRNOT00000076554 2 2 2 81 3 57389835 57389853 TGGAAGCGAGATTTACTGG 57 57376326 57389790 TTTGTTGAAGCTTTCGCTC 57 NA Rattus norvegicus 81 Dolk ENSRNOG00000016989 ENSRNOT00000022786 1 1 1 60 3 8850474 8850493 ACAAATCATCTCTGTGGCTC 58 8850433 8850453 GCTGTAGTTCAGGTCTACTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufb9 ENSRNOG00000009364 ENSRNOT00000012616 3 1 1 88 7 98816559 98816579 CTGAGAAAGCAGTGTATCCTG 59 98816629 98819205 CTGTTTAACCTCCCGATCC 58 NA Rattus norvegicus 81 Cntn4 ENSRNOG00000005652 ENSRNOT00000007788,ENSRNOT00000090847 3 2 2 80 4 138701647 138745880 ATGTGGTTGTGAAAGACCC 58 138745923 138745942 GAAGAACAATGCTTTCTCCC 57 NA Rattus norvegicus 81 Serpina3c ENSRNOG00000010410 ENSRNOT00000013896 2 1 1 80 6 128000904 128000922 ATCGCAGAACTGTTCTCAG 58 127999065 128000863 CTTCCATTTGCCTTTAAAGAGG 58 NA Rattus norvegicus 81 Milr1 ENSRNOG00000042524 ENSRNOT00000078968,ENSRNOT00000047657 2 2 2 111 10 94958204 94958224 AGCTGTATGCGAATATCTGTG 58 94959515 94960917 TCAAGGCCTTCTTGTTCTG 58 NA Rattus norvegicus 81 Btbd3 ENSRNOG00000008088 ENSRNOT00000010835 2 1 1 80 3 131352882 131353438 GACACAAATACGTCCTAGCTG 59 131353479 131353498 TCTCATCTTTGTCCTCAGCA 59 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000042230,ENSRNOT00000043870,ENSRNOT00000070918,ENSRNOT00000046246,ENSRNOT00000052367,ENSRNOT00000042251 1 6 6 80 6 4278350 4278371 CACCATTGGTCTGAAAGATTCC 60 4259352 4278309 TTGCTGGCAAATGTGTCTG 59 NA Rattus norvegicus 81 Mir204 ENSRNOG00000035472 ENSRNOT00000053595 2 1 1 61 1 240403036 240403056 CTTTGTCATCCTATGCCTGAG 59 240403079 240403097 AATTGAACGTCCCTTTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdc42ep4 ENSRNOG00000028946 ENSRNOT00000048264 2 1 1 60 10 102246299 102246318 CAGCCAGACAAGGAATTCTC 59 102246258 102246276 CTCAAACTCGGATCTCGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC685763 ENSRNOG00000028880 ENSRNOT00000049913 2 1 1 82 X 63915811 63915830 GAGCCATCAACTTCAAGAGG 59 63915875 63915914 ACACTACATTCGGGACCAG 59 NA Rattus norvegicus 81 Mcpt4 ENSRNOG00000024785 ENSRNOT00000027895 2 1 4 81 15 34781763 34782179 CATACAAGAAGGGAGACTCTG 58 34782222 34782240 CCTGTTCCATGGTCATGAG 58 NA Rattus norvegicus 81 LOC100363193 ENSRNOG00000038299 ENSRNOT00000058309 1 1 1 80 X 54266770 54271061 CAATGAATGGCAGTCAATTTCC 59 54271102 54271120 TCAGGTATTGGTGCTCTGG 59 NA Rattus norvegicus 81 Slc17a2 ENSRNOG00000017180 ENSRNOT00000023241 2 1 1 81 17 43575525 43575543 TCACAATTTGGGCGAAGTG 59 43573416 43575480 GATCCAAATGCTGCTCCTG 59 NA Rattus norvegicus 81 Olr756 ENSRNOG00000048607 ENSRNOT00000040285 3 1 1 60 3 102620367 102620387 CTCATCAAAGGCACTATCCAC 59 102620407 102620427 CCCAAAGAATAGCACAACCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myo9a ENSRNOG00000011619 ENSRNOT00000083558,ENSRNOT00000015963 2 2 2 80 8 64682056 64686967 AGGAAGAGAAGTACAGTATAACCC 59 64687003 64687024 TTTCATTCAGAGTGTTCATGCC 60 NA Rattus norvegicus 81 Ulk2 ENSRNOG00000002763 ENSRNOT00000003792 3 1 1 80 10 48114150 48125112 CTCTATGATGTTCAGGAATTACCC 59 48113137 48113159 CAAATAATCTGCCAGATCTCCAC 60 NA Rattus norvegicus 81 Timmdc1 ENSRNOG00000002999 ENSRNOT00000004023 1 1 1 81 11 64791020 64791039 CGTTCTTATGTCTCAGACCC 58 64791083 64795087 TCCGCTGTTCATCTTTGAC 58 NA Rattus norvegicus 81 Calb1 ENSRNOG00000007456 ENSRNOT00000010845 1 1 1 80 5 29539061 29539079 TACCTGGAAGGAAAGGAGC 59 29539123 29542655 AGGTGATAGCTCCAATCCA 58 NA Rattus norvegicus 81 Qrfpr ENSRNOG00000014414 ENSRNOT00000039615 3 1 1 89 2 122894203 122898613 GCCTTGAGATTAAGTATGACTTCC 59 122894137 122894156 TGTAGATTCTCTGGTGCACG 60 NA Rattus norvegicus 81 Plod1 ENSRNOG00000007763 ENSRNOT00000010433 1 1 1 80 5 164728502 164728522 GATAATTACCAGACCACCCAC 58 164727860 164728465 GATGTACTTCTCTTTCCAATCCTC 59 NA Rattus norvegicus 81 Irx1 ENSRNOG00000033609 ENSRNOT00000044690 3 1 1 93 1 33911405 33914382 CTCACAGATGGGCTCTCAG 60 33914437 33914457 ATAGGGATAATAAGCAGGCGT 59 NA Rattus norvegicus 81 Trappc5 ENSRNOG00000001003 ENSRNOT00000001327 1 1 1 73 12 2231559 2231577 CAAAGTTACAGCGCACTGG 60 2231614 2231632 GATCTCGGGCAATAACAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tm4sf1 ENSRNOG00000015812 ENSRNOT00000021535 2 1 1 80 2 147389863 147389881 AGAAGGACCAAAGTGTAGC 57 147385943 147389820 GAATCCAGAAGGTACTGTCC 57 NA Rattus norvegicus 81 Rgs4 ENSRNOG00000002773 ENSRNOT00000003774 1 1 1 80 13 88057826 88058139 CCTGATTAACCATGAATGTGGA 59 88057767 88057788 CAGAAGTCAATGTTCTCCTCAC 59 NA Rattus norvegicus 81 Gabrr3 ENSRNOG00000001679 ENSRNOT00000002281 1 1 1 80 11 43080009 43088209 CCTGGATTTGGAGGTTCAC 58 43079947 43079967 CATGTTGACCTCTGAAATGCT 59 NA Rattus norvegicus 81 Rn60_X_0633.2 ENSRNOG00000051233 ENSRNOT00000076550 2 1 1 60 X 63245875 63245893 CAAAGAACCCTGATGGCAC 59 63245833 63245855 TTCTTTCTAGGGATAGCACACTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnbp ENSRNOG00000010239 ENSRNOT00000013884 1 1 1 80 4 119750486 119750506 TTCCTGACATCTGTTATCGCT 59 119750271 119750445 AGTTATAGCAGGCATCCTCC 59 NA Rattus norvegicus 81 Trim35 ENSRNOG00000009449 ENSRNOT00000012528 1 1 1 81 15 42966578 42969596 CAAGCACAATGAGGTGCAG 60 42969641 42969659 CACCCTCAGGAAATCTCGG 60 NA Rattus norvegicus 81 Pde6c ENSRNOG00000016593 ENSRNOT00000022317 3 1 1 80 1 256854504 256860834 ACTTGTACCAAATGAAGTCCAC 59 256860872 256860893 TATATTCCAGGTGATGTCGCTC 60 NA Rattus norvegicus 81 Olr1315 ENSRNOG00000048263 ENSRNOT00000050312 2 1 1 60 8 43469512 43469531 CCATTGATCTACAGCCTCAG 58 43469471 43469489 GACGTAGGACAATCCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr303 ENSRNOG00000047015 ENSRNOT00000040258 2 1 1 60 1 213095291 213095309 ATCACAGTCATCCACAGCA 59 213095249 213095272 GATTGACTAGGAAGAAGTACATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lmod3 ENSRNOG00000032443 ENSRNOT00000047453 3 1 1 85 4 129618190 129618209 GATGAACGAGTTCCTGTCAG 58 129614602 129614621 ATGCTTGCAATGCCTTTCTC 60 NA DesignNoJunction Rattus norvegicus 81 Zfp57 ENSRNOG00000022730 ENSRNOT00000011704 2 1 1 80 20 2016934 2016955 CTACACAGAAGACCCTTTACCA 60 2015566 2016895 GAGGTTTCTTCTTGCTTTCCA 59 NA Rattus norvegicus 81 Hmga1 ENSRNOG00000000488 ENSRNOT00000000580 2 1 1 102 20 7137430 7137448 AAGGGAAGCAAGAACAAGG 58 7138036 7138942 CCTCTTCCTCCTTCTCCAG 59 NA Rattus norvegicus 81 Dfna5 ENSRNOG00000009970 ENSRNOT00000013264,ENSRNOT00000086453 2 2 2 80 4 79954626 79954644 TGCCTATGGCATCATGGAG 60 79953011 79953102 CTTCCTCCCTCGTCTTGTG 60 NA Rattus norvegicus 81 AABR07065750.2 ENSRNOG00000050118 ENSRNOT00000072238 3 1 1 74 6 140102151 140102283 AAAGGTGTCCAGTGTGAGG 60 140102095 140102115 TAGTTTCAGAGACCTTCCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Eva1a ENSRNOG00000007118 ENSRNOT00000009321 1 1 1 86 4 112802048 112802066 CTTGGAGATGGCTTTGCTC 59 112822374 112822392 GAGACAAAGTACAGAGCGG 58 NA DesignNoJunction Rattus norvegicus 81 P2rx2 ENSRNOG00000037456 ENSRNOT00000085661,ENSRNOT00000056694,ENSRNOT00000056693,ENSRNOT00000056692,ENSRNOT00000081447 1 5 5 80 12 52398367 52398386 GTGTAGTCAGCATCATCACC 59 52398429 52398526 TGTGAACCCTCATGCTCTC 59 NA Rattus norvegicus 81 Atrip ENSRNOG00000020670 ENSRNOT00000028055 3 1 1 80 8 117798935 117799359 CTGGAACAAGAGGTAGTGTG 58 117798874 117798893 CTGACAGTCAGAAACAATGC 57 NA Rattus norvegicus 81 Ptchd1 ENSRNOG00000003675 ENSRNOT00000044129 2 1 1 80 X 42595902 42595924 GGAATCATCAATCTTACTGGTGG 59 42595959 42608789 GTATAATCCATGACCTAGCATGAC 59 NA Rattus norvegicus 81 Stard3nl ENSRNOG00000052429 ENSRNOT00000081314 3 1 1 95 17 47687949 47687967 TAGTTCAGGATGCATCGGA 58 47688025 47695299 CTTCAGATCCTGCTTCAGAC 58 NA Rattus norvegicus 81 Vamp5 ENSRNOG00000012659 ENSRNOT00000016984 3 1 1 84 4 100232477 100232495 ATTTCGACAAGGTCCTGGA 59 100231718 100232429 AAGGCAGAACTCATGTCCA 59 NA Rattus norvegicus 81 LOC102547216 ENSRNOG00000037486 ENSRNOT00000056743 1 1 1 80 6 144071944 144072078 GGTTTCATTCACATACAGACAC 58 144072114 144072137 ATAGGAGAGTAGTGTAATAGTCCC 58 NA Rattus norvegicus 81 Olr1135 ENSRNOG00000049064 ENSRNOT00000073314 1 1 1 60 8 19082330 19082351 TGGTTATCATCTTGGCTATCAG 58 19082291 19082309 AGGAAGAGGTACATGGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pfkfb2 ENSRNOG00000004162 ENSRNOT00000037679,ENSRNOT00000005729,ENSRNOT00000050354,ENSRNOT00000050859,ENSRNOT00000067445 2 5 5 80 13 47424796 47425616 AATGAGATTGATGCTGGCG 59 47424734 47424753 TCGAAGTGCAAATTCCTCTG 59 NA Rattus norvegicus 81 Olr1148 ENSRNOG00000006584 ENSRNOT00000008605 1 1 1 60 8 19549270 19549291 TGCTTCAGTATCTAACTCTTCC 57 19549311 19549330 GAGCACACTGTACATCATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd93 ENSRNOG00000024799 ENSRNOT00000076493,ENSRNOT00000034256 1 2 2 60 3 142781732 142781751 GCTATTCCTGGATTCCAGAG 58 142781443 142781710 GTTGGGCTGTACTGATTCTC 58 NA DesignNoJunction Rattus norvegicus 81 Obp1f ENSRNOG00000058697 ENSRNOT00000088538 1 1 1 80 X 45215358 45217150 TTTAGTTGCTGGGAAACGAG 59 45217188 45217211 GGAATATTATATTCCTCAGCCAGC 59 NA Rattus norvegicus 81 Atad2b ENSRNOG00000058973 ENSRNOT00000085612 3 1 3 80 6 29046692 29046711 TTCTTCTGATGAAGAGCGCT 60 29046752 29049765 AAGTTCATAGGCAAACACCTG 59 NA Rattus norvegicus 81 Nradd ENSRNOG00000020936 ENSRNOT00000028416 2 1 1 97 8 118891403 118892280 GGTGTATTCAGATACAGCCC 58 118891325 118891343 ATAGGGAGGAGGTATTGGG 57 NA Rattus norvegicus 81 Crtc3 ENSRNOG00000011975 ENSRNOT00000089591,ENSRNOT00000015948 3 2 2 80 1 142417277 142418612 GACCAAGGAGATCCAGTCC 59 142410683 142410701 TGGCCATTATGTGGGAAGG 60 NA Rattus norvegicus 81 Eml4 ENSRNOG00000030294 ENSRNOT00000042307,ENSRNOT00000080013 1 2 2 80 6 6648271 6652248 GACCTAAAGGTGTATATCAGATCAG 59 6652284 6652304 CATTTCTCATCTGACAAAGCG 58 NA Rattus norvegicus 81 Vwa9 ENSRNOG00000012469 ENSRNOT00000016798 3 1 1 80 8 70460641 70463119 CAACAAAGAAGGTGACGAGG 59 70463162 70463180 TTGCCAGCAATCTGATTGG 59 NA Rattus norvegicus 81 Ergic2 ENSRNOG00000001852 ENSRNOT00000067970,ENSRNOT00000079291 3 2 2 80 4 182575631 182576822 TTGCTGTAGATCACAACCAG 58 182575570 182575589 CTGCGGAAATCTTGTATGTG 57 NA Rattus norvegicus 81 Tpp1 ENSRNOG00000019212 ENSRNOT00000026280 2 1 1 80 1 170593593 170593611 GAAACAGCAGAACCTGGAC 59 170592290 170593552 AGGTACTTTCCATATCGAGGAG 59 NA Rattus norvegicus 81 Mrps15 ENSRNOG00000008279 ENSRNOT00000011565 2 1 1 80 5 144054646 144054895 CTACAGACTCCTAGTCTCCTG 58 144056106 144056125 TGGTTCATCATCTTGCTTGG 59 NA Rattus norvegicus 81 1700092M07Rik ENSRNOG00000048966 ENSRNOT00000073052 1 1 1 62 1 224938852 224938870 GTAACAGAGGAAGGCAGGG 60 224939012 224939030 AGATCTTTGTTTACGGCGG 58 NA DesignNoJunction Rattus norvegicus 81 1700092M07Rik ENSRNOG00000048966 ENSRNOT00000073052 2 1 1 63 1 224938851 224938869 AGTAACAGAGGAAGGCAGG 59 224939012 224939030 AGATCTTTGTTTACGGCGG 58 NA DesignNoJunction Rattus norvegicus 81 Atp6v1a ENSRNOG00000001992 ENSRNOT00000002727 2 1 1 80 11 61570931 61570950 TGAGGACCAAAGCTAAGGAG 59 61570993 61579091 CTAAAGACGCCTTTCCCAC 59 NA Rattus norvegicus 81 Rn60_3_0430.2 ENSRNOG00000006829 ENSRNOT00000008925 3 1 1 60 3 37875831 37875850 CCTTCATGTGTTTGACAAGG 57 37875790 37875809 GACATGATGGATTTCAGCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc2a5 ENSRNOG00000017693 ENSRNOT00000089314,ENSRNOT00000024054 1 2 2 80 5 167142238 167147196 TCAAGAGAAGACAGGGAAGC 60 167147239 167147257 CCATACTGGAAGGAGGAGC 59 NA Rattus norvegicus 81 Rn60_3_1509.3 ENSRNOG00000043043 ENSRNOT00000068257 1 1 1 63 3 144466146 144466164 GAGCCATATGGTGGAAGTG 58 144469745 144469763 CAAGATCCTCTCAGCCACC 60 NA DesignNoJunction Rattus norvegicus 81 Rn60_3_1509.3 ENSRNOG00000043043 ENSRNOT00000068257 2 1 1 64 3 144466146 144466164 GAGCCATATGGTGGAAGTG 58 144469746 144469764 ACAAGATCCTCTCAGCCAC 59 NA DesignNoJunction Rattus norvegicus 81 Polr3b ENSRNOG00000007432 ENSRNOT00000009746 2 1 1 80 7 24801354 24801373 CATCTCCACAAACCTTACGG 59 24798358 24801313 TTGACAATGATGTAAGGCCTG 59 NA Rattus norvegicus 81 Lrrc55 ENSRNOG00000028266 ENSRNOT00000031745 3 1 1 117 3 72597857 72601812 TGTACAGCGGATTCTCAGC 60 72597758 72597776 CATCCAGGGTCAGAGTCAG 59 NA Rattus norvegicus 81 Asns ENSRNOG00000007546 ENSRNOT00000010079,ENSRNOT00000083481 2 2 2 80 4 33750803 33750823 CAAATACCATCACTGTACGGA 58 33750510 33750761 TCTATCTCAAAGCCTGGGA 57 NA Rattus norvegicus 81 RGD1561694 ENSRNOG00000029107 ENSRNOT00000040676 1 1 1 60 14 73675028 73675046 AAATGCTCCCAAGAGACCA 59 73675070 73675088 CTTTGGGCGATGTTCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdk13 ENSRNOG00000013620 ENSRNOT00000018431 1 1 1 80 17 49889292 49899574 ATATAGCTCAGAAGAAAGCCGT 60 49899615 49899633 TCTCCCAAGAGCAGTTCAG 59 NA Rattus norvegicus 81 Slco2a1 ENSRNOG00000009005 ENSRNOT00000091275,ENSRNOT00000012162 3 2 2 80 8 111564426 111564446 ACATTCCTCAACAAGTTCCTG 59 111564486 111565553 AAGATTTACAGCACCGATGAG 59 NA Rattus norvegicus 81 Lrp11 ENSRNOG00000014303 ENSRNOT00000019181 3 1 1 80 1 1720559 1720577 CAGAGAAGAGGATCCAGCC 59 1720618 1723342 TTCCTGAGGAATTACTGTCTGG 60 NA Rattus norvegicus 81 Foxn4 ENSRNOG00000000691 ENSRNOT00000065060 2 1 1 80 12 48114736 48115261 TCCTACAGCTGTCTGATCG 59 48115302 48115323 CATGAAGCTGTAGATCTCACTC 59 NA Rattus norvegicus 81 Tab3 ENSRNOG00000003643 ENSRNOT00000004854 2 1 1 81 X 54077147 54077167 AGAAGCATGAACAGACAACTC 59 54077204 54079761 CAAAGTTTCCTCTAGATTGAAGGAG 60 NA Rattus norvegicus 81 Avpr2 ENSRNOG00000059862 ENSRNOT00000091495 2 1 2 82 X 156889612 156889791 AAGCTCCTCTGGAAAGACC 59 156889548 156889567 AGCATAGATCCAAGGGTTGG 60 NA Rattus norvegicus 81 Rn60_3_1464.1 ENSRNOG00000026836 ENSRNOT00000036834 3 1 1 60 3 139945347 139945366 AAAGGCTAGATGTGACCCTG 60 139945306 139945327 GTCCTTGTTGACTGAGTTTCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100364912 ENSRNOG00000004947 ENSRNOT00000006697 1 1 1 113 7 15026536 15027660 AAACTAAGTGGTCAAGTGGTG 59 15026443 15026462 TCCTTGTAAGGAGTTCTGGT 58 NA Rattus norvegicus 81 Aox4 ENSRNOG00000014555 ENSRNOT00000083902,ENSRNOT00000033068 3 2 3 80 9 65133216 65134669 ATCTAAAGAAGGACAACGGC 58 65134712 65134730 TCTTCTGGTTTCAAGCTGG 58 NA Rattus norvegicus 81 LOC100910744 ENSRNOG00000049356 ENSRNOT00000073212 3 1 1 60 8 41898713 41898734 CTTCTTGGGAATCTATGTGGTC 59 41898752 41898773 AACAATCAGAACAATCAAGCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC501406 ENSRNOG00000046353 ENSRNOT00000070999,ENSRNOT00000071758 3 2 2 81 1 38585742 38585760 TGGTCACATTTCTGGAGCA 59 38583896 38585700 GGTTTCAATCCTAGATGGATGG 59 NA Rattus norvegicus 81 Tmtc1 ENSRNOG00000001854 ENSRNOT00000064320 1 1 1 80 4 182678305 182687884 GAGTCCTTATTCAGGTCTGGAG 60 182678246 182678265 GTCTTTGAGGAAATTGGCGT 59 NA Rattus norvegicus 81 Vps41 ENSRNOG00000012940 ENSRNOT00000067636 1 1 1 80 17 48705935 48708213 GAACTTCCATCAAGATATGCTC 57 48705876 48705897 CTATTTCAACGTATCGACTTGG 57 NA Rattus norvegicus 81 Vps41 ENSRNOG00000012940 ENSRNOT00000067636 2 1 1 80 17 48678254 48679191 GATTATGAGGGCTTTGCCA 58 48678192 48678212 TCGAACTGCTTGAACTATCAC 59 NA Rattus norvegicus 81 Wfs1 ENSRNOG00000005108 ENSRNOT00000034730 3 1 1 95 14 78654796 78654814 TCCCATGAAGGCAGATGTG 60 78654873 78656300 TAGTGTTTGCCCACCTCTG 60 NA Rattus norvegicus 81 RGD1560803 ENSRNOG00000029935 ENSRNOT00000047128 2 1 1 64 X 65335684 65335864 AAGGTAAGAAGGCCCAAGG 59 65335638 65335658 TGGATTCTTGGTAGGGTTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Lin7b ENSRNOG00000020746 ENSRNOT00000028164 1 1 1 85 1 101358877 101359547 TGAATGGTGTGAGTGTGGA 59 101358810 101358828 CACCACCAGTTTCACTGAG 58 NA Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000076397 1 1 5 82 7 120763793 120764149 CTCTTCCAGAGGTCCTGAG 59 120763729 120763748 AGAAGAGGGCATCAGATCTC 59 NA InUTR Rattus norvegicus 81 Tmco5a ENSRNOG00000005100 ENSRNOT00000006809 3 1 1 80 3 108546571 108546591 GAATAGATGAAGCCAACCAGG 59 108546632 108547074 TGATCTCATGTTCCAGCCTC 60 NA Rattus norvegicus 81 Slco1b2 ENSRNOG00000030538 ENSRNOT00000013409,ENSRNOT00000013514 3 2 2 80 4 175858610 175862043 ACCTACGATGGAATGAACCC 60 175862085 175862104 TTTATCACAACTGCAGTCCG 59 NA Rattus norvegicus 81 Pbsn ENSRNOG00000003713 ENSRNOT00000046768 2 1 1 82 X 45251455 45251476 CAGAATACATGAACTTCGTGGA 59 45250789 45251412 GTTTGGACAGGTGTCTGTG 59 NA Rattus norvegicus 81 Prm1 ENSRNOG00000002532 ENSRNOT00000003420 2 1 1 222 10 4945913 4945931 AAATTCCACCTGCTCACAG 58 4946208 4946226 CCTAAAGGTGTATGAGCGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gpr146 ENSRNOG00000001288 ENSRNOT00000001733 1 1 1 60 12 17346882 17346900 CATGTGACACTGCTCATCC 59 17346840 17346858 GTGCAGTGGAGTACATGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fads3 ENSRNOG00000020385 ENSRNOT00000027693 1 1 1 80 1 226106790 226106927 TCCAGATTGAACACCACCTC 60 226106970 226106988 CACAGAATGCCTTGACCAG 59 NA Rattus norvegicus 81 Fads3 ENSRNOG00000020385 ENSRNOT00000027693 2 1 1 80 1 226104655 226104676 CAATATCTTCCACAAGGATCCA 58 226104717 226104991 TTCTTGCCATACTCCACAG 57 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000057802,ENSRNOT00000040060 3 2 5 180 1 80531419 80533392 ATCGAGCTTCGAGACTGTG 60 80529945 80531276 TGCCCAAGTTGTTAAAGCTG 59 NA Rattus norvegicus 81 Olr1504 ENSRNOG00000045754 ENSRNOT00000050847 1 1 1 60 10 60772102 60772120 ACTTGTCCTTCTCTGACCT 58 60772060 60772079 ATGTTCTGAAGCAATTTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr334 ENSRNOG00000042023 ENSRNOT00000067320 2 1 1 60 1 229443494 229443516 TCTCTACTCATCCATCATGTCAC 60 229443535 229443554 TGTATAGCTTCCCATCACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dzip1l ENSRNOG00000014746 ENSRNOT00000090299,ENSRNOT00000019902 1 2 2 80 8 107910961 107910981 TGATTCTGAGACCTCAGAGGA 60 107911023 107913472 TGTACCAGTGTTGCTGAGG 60 NA Rattus norvegicus 81 Fbxw4 ENSRNOG00000046211 ENSRNOT00000072223 3 1 1 80 1 265400963 265400981 ACGAGTGAAGCTGTCTCAG 60 265397045 265400920 GGCATCTGACTGTATCTCCA 59 NA Rattus norvegicus 81 Ndufb7 ENSRNOG00000028717 ENSRNOT00000035890 3 1 1 81 19 24704983 24705001 CAGCTTTCCCAACTTCGTG 60 24705046 24705230 CATGCGCTTCACATAGTCC 59 NA Rattus norvegicus 81 Stfa2 ENSRNOG00000050110 ENSRNOT00000042374 3 1 1 84 11 67466272 67469369 ATCGCTGACAAGGTCAGAC 60 67469414 67469435 CTTGAACTTTATACTGGACGGC 60 NA Rattus norvegicus 81 Armcx3 ENSRNOG00000025730 ENSRNOT00000029664 1 1 2 80 X 105575450 105575469 ATCAGAAAGATTGCTGGGTG 58 105575509 105575821 CAGAGGTAAACCTCCTTAAAGC 59 NA InUTR Rattus norvegicus 81 Armcx3 ENSRNOG00000025730 ENSRNOT00000088760 2 1 2 90 X 105577016 105579577 CCATGATTTCCAGAATGAACAC 58 105579627 105579646 ACTAGGGCTTCTCGTTACTC 59 NA Rattus norvegicus 81 Tecr ENSRNOG00000021808 ENSRNOT00000037608 3 1 1 87 19 24708287 24731878 ACTACGAGGTGGAGATTCG 59 24707666 24707685 ATTTCAGAAATGGTGGCCTG 59 NA Rattus norvegicus 81 Cend1 ENSRNOG00000045680 ENSRNOT00000074016 1 1 1 60 1 214408312 214408330 AATCACAGCAACCTGAAGC 59 214408270 214408288 TTGTATCAGGACTGCTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem45a ENSRNOG00000048935 ENSRNOT00000073404 1 1 1 81 11 46765816 46765835 ACTACTAATGCACTTCCGCT 59 46765873 46766833 GGTTGTAGAAGATAAATGTCTCCAC 60 NA Rattus norvegicus 81 Tmem45a ENSRNOG00000048935 ENSRNOT00000073404 2 1 1 82 11 46765815 46765835 TACTACTAATGCACTTCCGCT 59 46765873 46766833 GGTTGTAGAAGATAAATGTCTCCAC 60 NA Rattus norvegicus 81 Gria4 ENSRNOG00000006957 ENSRNOT00000009542,ENSRNOT00000081171,ENSRNOT00000078765 2 3 3 80 8 1676601 1676623 GTAACCAAACTAATGGATCGGTG 60 1654229 1676562 AGAGGTGTACTTTGGAGGTG 59 NA Rattus norvegicus 81 Aldh7a1 ENSRNOG00000014645 ENSRNOT00000020325 1 1 1 80 18 51643502 51643522 CCAAAGCGAGGAGAAATAGTC 59 51642584 51643460 CAAAGACACCAGTCTTCCC 58 NA Rattus norvegicus 81 Mpzl3 ENSRNOG00000026753 ENSRNOT00000032837 3 1 1 81 8 49361045 49361064 TCAGATGTCACTGACAAGCT 59 49361102 49365360 GATAATGGAAGATAGATTCTGTGCG 60 NA Rattus norvegicus 81 Cmtr1 ENSRNOG00000000532 ENSRNOT00000083108,ENSRNOT00000000640 2 2 2 80 20 8364883 8364903 CAGCTTGCTGAGAAATTTGTG 59 8364945 8365774 GTACACCTCCTTCACCCTG 59 NA Rattus norvegicus 81 Fam57a ENSRNOG00000007722 ENSRNOT00000010168 3 1 1 80 10 64365399 64365418 TTTGTCGGATGCATCTTCAC 59 64365459 64366130 CTGCTGCTTTAACTGGATCAG 59 NA Rattus norvegicus 81 Nudt18 ENSRNOG00000011831 ENSRNOT00000015969 3 1 1 105 15 52266931 52267157 ACCAACAGGTGGAGTTCTC 59 52267226 52267244 ATCATGAGCTCTAAGCGGT 59 NA Rattus norvegicus 81 Cycs ENSRNOG00000010452 ENSRNOT00000014058 3 1 1 126 4 80332172 80332297 AAGAACAAAGGTATCACCTGG 58 80332066 80332084 TTAGGTCTGCCCTTTCTCC 59 NA Rattus norvegicus 81 Fam160a1 ENSRNOG00000048256 ENSRNOT00000071580 2 1 1 80 2 184986187 184993052 CCTACTTCTGTCCAGTGCT 59 184986125 184986143 CCTCACCCTTCTCTTCCAG 59 NA Rattus norvegicus 81 Fam160a1 ENSRNOG00000048256 ENSRNOT00000071580 3 1 1 81 2 184986188 184993054 TACCTACTTCTGTCCAGTGC 59 184986126 184986144 CTCACCCTTCTCTTCCAGC 60 NA Rattus norvegicus 81 Ppp1cb ENSRNOG00000004612 ENSRNOT00000006190 3 1 1 80 6 23557265 23559170 TGTCATGGAGGACTGTCAC 59 23557203 23557222 TGTATCAGGTACGTCAGTGG 59 NA Rattus norvegicus 81 Igfbp3 ENSRNOG00000061910 ENSRNOT00000088355 2 1 1 80 14 87461069 87461500 GGGAGACAGAATATGGTCCC 59 87461008 87461026 TGGGACTCAGCACATTGAG 60 NA Rattus norvegicus 81 Olr396 ENSRNOG00000025931 ENSRNOT00000030984 1 1 1 60 3 15749710 15749730 GTACTGTGTTTGAGTTCCTCC 59 15749750 15749770 AAGACATTCTGATGCTCTGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gng13 ENSRNOG00000039350 ENSRNOT00000030273 3 1 1 90 10 15090460 15090480 GATGAAGAAGGAGGTGGAGAG 60 15090532 15090674 AATCCACTTGAGGAGCTCG 60 NA Rattus norvegicus 81 Apool ENSRNOG00000004512 ENSRNOT00000005997 1 1 1 80 X 83714284 83714304 AGCCTGGTTATTTACAAAGGG 58 83714346 83717973 GATAAATGCCCTTGCACCA 59 NA Rattus norvegicus 81 Ebf2 ENSRNOG00000011548 ENSRNOT00000016568 2 1 1 80 15 44083694 44083715 ATAGACTATGGCTTCCAAAGAC 58 44083755 44085334 TAGCATTTCCTTAGCTAGCC 57 NA Rattus norvegicus 81 Bst2 ENSRNOG00000059900 ENSRNOT00000091906 3 1 1 108 16 19941283 19941301 AAGGTGTCTCAAACCCAGG 60 19939313 19941215 CTGTGGTAGAAATTTCCTTTCCC 60 NA Rattus norvegicus 81 Ndufa11 ENSRNOG00000048320 ENSRNOT00000070862 1 1 1 80 9 10335160 10335178 CACAACCCTGCAGATTCTC 59 10334896 10335117 CATAGCTCCAATAGCAGCTG 59 NA Rattus norvegicus 81 Ugt2b15 ENSRNOG00000046540 ENSRNOT00000047655,ENSRNOT00000063915 3 2 4 80 14 22529845 22532484 ATGACCTCCTTGGTCATCC 59 22532525 22532546 CATGATAGATGGCCTCATAGAC 58 NA Rattus norvegicus 81 E2f4 ENSRNOG00000015708 ENSRNOT00000021145 3 1 1 81 19 37253049 37253469 CTTGACCTCAAGTTGGCAG 59 37253514 37253532 TACCTTCCAACACGTTGGT 59 NA Rattus norvegicus 81 Spred2 ENSRNOG00000004888 ENSRNOT00000006573,ENSRNOT00000079874 1 2 2 86 14 104274952 104274971 CTTACTTTCCAAAGCCCTGC 60 104275015 104277348 GGTTGTTGAACCTTCTATAAGGTC 60 NA Rattus norvegicus 81 LOC102550416 ENSRNOG00000042517 ENSRNOT00000085931 1 1 5 86 2 192539036 192566885 TGTGCCATAGTGTCCTGAG 59 192566935 192566953 TTCTGCTGACATGGTGGAG 60 NA Rattus norvegicus 81 LOC102550416 ENSRNOG00000042517 ENSRNOT00000085204,ENSRNOT00000084784 2 2 5 171 2 192553984 192554002 TGTCTTACCAACAGCAGCA 60 192616086 192616104 GGAGGAGTTTGGACAGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_5_0814.31 ENSRNOG00000051026 ENSRNOT00000075915 3 1 1 90 5 77336884 77336906 GGAGCAATGTTCTATAGGAAAGG 59 77332300 77336834 TTGTTGGACCTTTGCACTG 59 NA Rattus norvegicus 81 Pet100 ENSRNOG00000050169 ENSRNOT00000071928 1 1 1 80 12 2170674 2171437 GGTGTTTCGGATGTCACTC 59 2171481 2171499 TAGTCCTCGAACCACTCAG 58 NA Rattus norvegicus 81 Celf1 ENSRNOG00000010379 ENSRNOT00000014484 3 1 1 80 3 79826155 79826173 TTTACACCCGTAAAGCTGC 59 79826216 79826608 GTATAGGGTGATGCATCCCA 59 NA Rattus norvegicus 81 Psmd12 ENSRNOG00000003117 ENSRNOT00000004283 2 1 1 80 10 95721545 95721565 CTGACGTCTTCAGTTCTACAG 58 95721606 95723364 TTCTGATGTTATGCTCCACG 58 NA Rattus norvegicus 81 Tfam ENSRNOG00000000613 ENSRNOT00000000753 2 1 1 124 20 18595146 18596699 AAGCTAAACACCCAGATGC 58 18597313 18597331 GTACACCTTCCACTCAGCT 59 NA Rattus norvegicus 81 Tspo2 ENSRNOG00000050521 ENSRNOT00000073130 1 1 1 95 9 14513193 14513884 TACTCTGTCATGGGCTACG 59 14513943 14513961 GAAAGAGTAGAGGCCGAGG 59 NA Rattus norvegicus 81 LOC100360690 ENSRNOG00000049161 ENSRNOT00000074115 2 1 1 80 1 252166245 252167330 CAAGAGCTCACATAACACTAGG 59 252166186 252166207 TCAAGAATCCAGTAATCAGCAG 58 NA Rattus norvegicus 81 Sytl4 ENSRNOG00000003526 ENSRNOT00000004909,ENSRNOT00000004921 3 2 2 80 X 104776598 104776616 CATCCATGTCAAGGAGTGC 59 104776287 104776557 AGATAAGTCTTCACGTATGGGT 59 NA Rattus norvegicus 81 LOC100911575 ENSRNOG00000037607 ENSRNOT00000057030 1 1 1 122 1 214428535 214428553 GTTGCCTCTTATCTGCTGG 58 214428638 214429334 ACTGATGACCTTGTTGAGTC 58 NA Rattus norvegicus 81 Foxa2 ENSRNOG00000013133 ENSRNOT00000017742 3 1 1 102 3 142383465 142384456 CAGCGAGTTAAAGTATGCTGG 60 142385529 142385547 TTGCTCACGGAAGAGTAGC 60 NA InUTR Rattus norvegicus 81 Ptdss2 ENSRNOG00000015912 ENSRNOT00000021925 3 1 1 80 1 214144662 214144681 TTCGAGTTCCTGGAGTACAG 59 214144723 214144830 TACGTCCATGATCCAATGGT 59 NA Rattus norvegicus 81 Smc6 ENSRNOG00000004908 ENSRNOT00000007073,ENSRNOT00000083383 2 2 2 80 6 36949272 36949290 TCATGTGCCATTCAATGCT 58 36949332 36951670 TCTTCCCACTTCCATTATTGC 58 NA Rattus norvegicus 81 Dct ENSRNOG00000008671 ENSRNOT00000076707,ENSRNOT00000011571 2 2 2 80 15 103244245 103244263 CGAAATCAGGATGACCGTG 59 103235739 103244204 ATAACCAGCAAAGTTTCCTGTG 60 NA Rattus norvegicus 81 Ppp1r26 ENSRNOG00000027193 ENSRNOT00000036601 1 1 1 60 3 7037341 7037359 GCGGAAGTTTAGGAAGAGG 58 7037380 7037401 GCCAAATCTGACCTTCTTACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr226 ENSRNOG00000061860 ENSRNOT00000090329 3 1 1 60 1 148847085 148847103 CTCCATTGCTCAACCTGTC 59 148847043 148847062 AGGACAAAGTCTGTAAGCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Optc ENSRNOG00000003059 ENSRNOT00000064556 1 1 1 60 13 50740498 50741401 TGGAGACTTCAAAGGGATGAC 60 50740458 50740476 GGAGATGGAGTTGCTGGAG 60 NA DesignNoJunction Rattus norvegicus 81 AC109844.1 ENSRNOG00000053259 ENSRNOT00000088899 1 1 1 60 1 213583668 213583688 CCATTATAAATTCGGCACCAG 58 213586807 213586828 ACCTTGTTCTGCTATTTCTGAC 59 NA DesignNoJunction Rattus norvegicus 81 Hdac3 ENSRNOG00000019618 ENSRNOT00000084735,ENSRNOT00000060417,ENSRNOT00000078667 3 3 3 80 18 31077930 31077948 ATATCCCTCTCCTGGTGCT 60 31077771 31077890 GCAGAGATGTTTCATATGTCCAG 60 NA Rattus norvegicus 81 Greb1 ENSRNOG00000024651 ENSRNOT00000032417 1 1 1 80 6 41945794 41945812 ACTTTGTCTTCAGCCAACC 58 41943883 41945753 TGATGTGCTCATAACTCTTGTC 59 NA Rattus norvegicus 81 Cd300ld ENSRNOG00000042251 ENSRNOT00000077882 1 1 2 80 10 103544130 103544386 GTTCCTTTGAGGTTTAGGGT 58 103546104 103546123 TTCATGACTTCTCACCTCCT 58 NA Rattus norvegicus 81 Trim26 ENSRNOG00000032930 ENSRNOT00000079110,ENSRNOT00000085912,ENSRNOT00000001019 2 3 3 80 20 2205231 2205627 TATAAGACAGTAAGCGTCACC 57 2205171 2205189 GGTAATGCACTTCCAGTCC 58 NA Rattus norvegicus 81 Fam49b ENSRNOG00000061246 ENSRNOT00000090784,ENSRNOT00000078116 1 2 2 80 7 104529645 104534635 CGAAATACGAGAGGCAATCC 59 104529584 104529602 CCTACTAGTGGCACGACTG 60 NA Rattus norvegicus 81 Cryge ENSRNOG00000032869 ENSRNOT00000041632 2 1 1 83 9 72933670 72933688 AGTACCCTGACTACCAGCA 60 72933735 72935147 TTCTGTGAGAGCTGGAGTG 59 NA Rattus norvegicus 81 Pcdh19 ENSRNOG00000003929 ENSRNOT00000064458,ENSRNOT00000080386 1 2 2 88 X 104430003 104430021 AGCCTGTACTGCGATACTG 59 104393046 104429952 TCATTCTGGTCATGGTCAGG 60 NA Rattus norvegicus 81 Enpep ENSRNOG00000051854 ENSRNOT00000087062 3 1 1 80 2 233732602 233732621 AGGCGACTTACAACATATCC 58 233730701 233732561 GTGTCTCTTCCTTCTCTACTG 57 NA Rattus norvegicus 81 Pgr15l ENSRNOG00000021547 ENSRNOT00000035405 1 1 1 80 X 66318738 66318757 TGGAGTATTGCAGTGTTCCT 59 66318798 66319220 GACATCACCATCCATGTTGAC 59 NA Rattus norvegicus 81 Lipm ENSRNOG00000019301 ENSRNOT00000026219 1 1 1 80 1 252415473 252418226 ATTGAAGAAGGAAGGATCCAG 58 252418268 252418286 AGGTTGGAAATCCAGTTGC 58 NA Rattus norvegicus 81 Cfap126 ENSRNOG00000034221 ENSRNOT00000050804 1 1 1 93 13 89492035 89494142 CCAACCAGTATGAAAGGGC 59 89494363 89494381 TAACCTTCATGGGTAGCGA 58 NA Rattus norvegicus 81 Cfap126 ENSRNOG00000034221 ENSRNOT00000050804 2 1 1 94 13 89492035 89494142 CCAACCAGTATGAAAGGGC 59 89494364 89494382 GTAACCTTCATGGGTAGCG 58 NA Rattus norvegicus 81 Bin3 ENSRNOG00000018023 ENSRNOT00000083508,ENSRNOT00000077259,ENSRNOT00000024614 1 3 3 80 15 51815493 51815513 TTCTATAACAGCCGACTTGAC 58 51815550 51817867 CATTTCCGAGTAGTAGATAACCTG 59 NA Rattus norvegicus 81 Phospho2 ENSRNOG00000007979 ENSRNOT00000010489 2 1 1 86 3 56031047 56031065 AGGCTGGGTTTCTACACTG 59 56031549 56033439 ACGAAGACTTCTTAATTCCAGC 59 NA InUTR Rattus norvegicus 81 Daw1 ENSRNOG00000016247 ENSRNOT00000068236 3 1 1 80 9 88964593 88975710 ATTACCCACCAGGAATTATGC 58 88975747 88975770 GACTGAGCTCAAGTAAATCTATGG 59 NA Rattus norvegicus 81 Rn60_X_0649.2 ENSRNOG00000051212 ENSRNOT00000076836 3 1 1 60 X 63984261 63984280 GGTACCAGGAAGACTTTCAC 58 63984220 63984240 GGTTCTTACAGCAAGTAACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 C1ql4 ENSRNOG00000060020 ENSRNOT00000081784 2 1 1 90 7 140767913 140770125 ATGAAGAACGGACAGGTCC 59 140767841 140767859 CTAGGTGCAGAATGACGCT 60 NA Rattus norvegicus 81 Foxn1 ENSRNOG00000010870 ENSRNOT00000014672 2 1 1 80 10 65624648 65628818 CACTTCCCTTATTTCAAGACTG 57 65624589 65624608 CTCAAAGCACTTGTTGAGAG 57 NA Rattus norvegicus 81 Pcdh12 ENSRNOG00000019265 ENSRNOT00000026065 2 1 1 80 18 31424739 31427903 CTGTTCAGCAAATCTCCCAG 59 31424678 31424699 ATTTATTTCCTCGGTGGTTTGG 59 NA Rattus norvegicus 81 RGD1561197 ENSRNOG00000033366 ENSRNOT00000040244 3 1 1 80 15 67092876 67092948 GCAAGAGTCCAATGAGACC 58 67092990 67093010 TCTAAATCTCCAGAGGTGTGG 59 NA Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000076825,ENSRNOT00000036233 3 2 5 96 5 101656446 101656464 GTTAGGAAGGAGGCTGGTC 60 101656523 101660757 GTTCTGAATTCTGAGCGCAG 60 NA Rattus norvegicus 81 Nmur1 ENSRNOG00000018521 ENSRNOT00000025024 3 1 1 80 9 93403684 93404038 CAAGATGCTAATTGCTCTGGT 59 93403624 93403643 ACCATACTCCACATGAGACG 59 NA Rattus norvegicus 81 Kel ENSRNOG00000015682 ENSRNOT00000021485 3 1 1 80 4 70981807 70981825 AAGCTGTGTACGATCCCTC 59 70981601 70981764 GGAGATTTCTGCCATCTGTG 59 NA Rattus norvegicus 81 Nt5c1b ENSRNOG00000004296 ENSRNOT00000090438,ENSRNOT00000005731 1 2 2 80 6 36096127 36098932 CAATCACTATGGTCTACTGATCG 59 36098968 36098990 GTAAGATATGCCTTCAAGTAGCC 59 NA Rattus norvegicus 81 Tecpr1 ENSRNOG00000001010 ENSRNOT00000001347 1 1 1 80 12 12401625 12401746 ACTATGGCATTGGTGGAGG 60 12401790 12401808 GATCCCTGGACATGTTCCT 59 NA Rattus norvegicus 81 Tecpr1 ENSRNOG00000001010 ENSRNOT00000001347 2 1 1 80 12 12401624 12401745 GACTATGGCATTGGTGGAG 58 12401789 12401807 ATCCCTGGACATGTTCCTC 59 NA Rattus norvegicus 81 Ska3 ENSRNOG00000021847 ENSRNOT00000032723 2 1 1 80 15 38083152 38083170 ATTGCCACCTAAGTTCTGC 58 38081548 38083114 GGATAATCTATAGACACCAGATCTG 58 NA Rattus norvegicus 81 Olr796 ENSRNOG00000046306 ENSRNOT00000075514 2 1 1 60 3 103657136 103657157 GTGACATCAGAGTTTGTGTTCC 60 103657175 103657196 AGAGAAGCAGTTGAATATCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_1403.1 ENSRNOG00000051358 ENSRNOT00000076525 2 1 1 60 2 120637845 120637866 GCATTGGCTAATCTTAAGAAGG 58 120637884 120637905 TCTGCCTGGATAGCTTTATCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Drp2 ENSRNOG00000026704 ENSRNOT00000085693,ENSRNOT00000039864 2 2 2 80 X 105268445 105268464 AGAGGCTTAAACAGCTCCAG 60 105268504 105270498 GAACTTGAACAGAAGTGGAGAG 59 NA Rattus norvegicus 81 Tbc1d10b ENSRNOG00000017349 ENSRNOT00000023706 3 1 1 80 1 198648719 198651727 GTACTCAGGCAGCCTAGAG 59 198648657 198648676 TTACTGAACATCTCCAGCCA 59 NA Rattus norvegicus 81 Lyl1 ENSRNOG00000002950 ENSRNOT00000003980 2 1 1 98 19 25816362 25816474 CCTCAACAGTGTCTACATTGG 59 25816534 25816552 TCAACCAAGTCCAGCTCTC 59 NA Rattus norvegicus 81 Ehd3 ENSRNOG00000007744 ENSRNOT00000084773,ENSRNOT00000010419 1 2 2 80 6 25099679 25100258 AAGAGGATGCAGGATCAGC 60 25100301 25100320 ATCAACCACTTCTAGCAGCT 59 NA Rattus norvegicus 81 Rn60_5_0814.27 ENSRNOG00000051357 ENSRNOT00000076970 1 1 1 84 5 77403035 77403761 CTTGATGGGAAATCAAGATCCC 59 77402972 77402990 ATTCACCCTCCCTGAAGAC 59 NA Rattus norvegicus 81 Rn60_20_0046.8 ENSRNOG00000058238 ENSRNOT00000082815 1 1 1 72 20 2541198 2541216 ATACACATGCCATGTGGAG 58 2541022 2541162 CATACTGGACTGAGGAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Bsph2 ENSRNOG00000046669 ENSRNOT00000071105 1 1 1 80 1 75847750 75849603 GACTGAATGCAGAATTGATCTC 58 75842520 75842540 AGACAAATGGAAAGACACAGG 59 NA Rattus norvegicus 81 Vip ENSRNOG00000018808 ENSRNOT00000025477 2 1 1 80 1 42172926 42173824 GATGTGTCCAGAAATGCCA 58 42173868 42173886 TTTGGCAGAAATCTGACCC 58 NA Rattus norvegicus 81 Adgrv1 ENSRNOG00000016306 ENSRNOT00000066186,ENSRNOT00000084295 3 2 4 80 2 9465208 9465228 GGAAATATCACCTTTCCACCC 59 9463421 9465168 ATCATTCTCTGGTACCTCGTC 59 NA Rattus norvegicus 81 Pth ENSRNOG00000014318 ENSRNOT00000019199 3 1 1 63 1 178216459 178216477 GTTTGTCTCCTTACCCAGG 58 178216303 178216323 GCTGTATTTCACTGACAGCTC 59 NA DesignNoJunction Rattus norvegicus 81 LOC500846 ENSRNOG00000031425 ENSRNOT00000049063 1 1 1 80 7 69104817 69104836 CCCTGCAAGAATTCTTCCAC 59 69100414 69104775 CATGAGATGGAACGCTTCAG 59 NA Rattus norvegicus 81 Mmp8 ENSRNOG00000009907 ENSRNOT00000013936 3 1 1 80 8 5770928 5770947 GACTCTGGTGATTTCTTGCT 58 5770984 5771676 GGTATGGTTTATAATCCTGTAGGTC 59 NA Rattus norvegicus 81 Csf1r ENSRNOG00000018414 ENSRNOT00000079360,ENSRNOT00000049357 1 2 3 80 18 56444953 56446253 CATCTCCCTAGGACAAAGCA 59 56446293 56446314 GACATGACAGATATACAGGCCA 60 NA Rattus norvegicus 81 Prkcdbp ENSRNOG00000017914 ENSRNOT00000024119 2 1 1 87 1 170317715 170318275 CTGCTCTTCAAGGAGGAGAC 60 170317647 170317665 CTAGCACCAACTGGTCCTC 60 NA Rattus norvegicus 81 Olr44 ENSRNOG00000018512 ENSRNOT00000024965 3 1 1 60 1 167732121 167732141 ATTGCTGTATCCTATGCACTC 58 167732081 167732100 TAGCTTCTTTGGAGGAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1160 ENSRNOG00000049729 ENSRNOT00000050608 1 1 1 60 8 19995041 19995060 CCATTTGTCACCCTCTACAC 58 19995081 19995101 AGCAAACATCTACACAGACGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Entpd4 ENSRNOG00000016321 ENSRNOT00000064428,ENSRNOT00000088928 1 2 2 80 15 51234090 51235083 ATTTCAAAGGTACTTGGCCC 59 51235125 51235144 ACCACAATGCCATAGTTCAC 59 NA Rattus norvegicus 81 Cacng5 ENSRNOG00000003288 ENSRNOT00000004578 2 1 1 80 10 96125612 96129097 TCTTTATCCTATCCGGCCT 57 96125550 96125568 TTCTGTTGAGCATCTCGTC 58 NA Rattus norvegicus 81 Tnfaip8 ENSRNOG00000026136 ENSRNOT00000021972 2 1 2 80 18 44737216 44737236 TGGACATCTATGGACATCTGG 59 44737272 44738113 GATATTGTTACATTCTCCCTACAGC 60 NA InUTR Rattus norvegicus 81 Tnfaip8 ENSRNOG00000026136 ENSRNOT00000086431 3 1 2 83 18 44716369 44716388 GTGTGACTCTATCCAGACAC 58 44716434 44778259 AAGACATCTGTAGCCACCA 58 NA InUTR Rattus norvegicus 81 Ivl ENSRNOG00000009314 ENSRNOT00000012343 3 1 1 80 2 192762572 192762590 CAGCAGCATCAAGAGACTC 58 192762183 192762529 ATCCAGTACCATATCTGGCT 58 NA Rattus norvegicus 81 Gpr1 ENSRNOG00000045532 ENSRNOT00000072737 3 1 1 60 9 69960017 69960041 TCCTATGCCTTAGAATATTACTCCC 60 69959981 69959999 TTCCCGGGTACACATTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1166 ENSRNOG00000046909 ENSRNOT00000048326 3 1 1 60 8 20266580 20266599 AATCCCTTCCTCAAGTAGCA 59 20266621 20266640 TACGGACAGATGAGAACCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr823 ENSRNOG00000013247 ENSRNOT00000017689 3 1 1 60 4 148477194 148477216 GTCAAAGAGAAACCCTATCTCCT 60 148477233 148477254 CCATGTAAGGAAATAGAGCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem163 ENSRNOG00000003769 ENSRNOT00000005006 2 1 1 80 13 44176256 44193917 CTGAAGTGGACGATTTCCT 57 44176194 44176212 GCATGAACTTCAACACAGC 58 NA Rattus norvegicus 81 RGD1566386 ENSRNOG00000028651 ENSRNOT00000028927,ENSRNOT00000080364 1 2 2 83 12 18117995 18118015 TGAGTTGATCTCCAAGTTGGA 59 18108403 18117950 TTATGGACATCTGGCAGGC 60 NA Rattus norvegicus 81 LOC684509 ENSRNOG00000050514 ENSRNOT00000074950 2 1 1 60 2 210115939 210115957 CTCGCTGTAATTATGCCCA 58 210115897 210115916 CCTTGTTGATCATGCTAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC684988 ENSRNOG00000028021 ENSRNOT00000034694 2 1 1 60 3 4341384 4341404 CCGCCTGATTCTAATTGAGAG 59 4341344 4341366 CCGCTTAGTCTTATAGTATCGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC684988 ENSRNOG00000028021 ENSRNOT00000034694 3 1 1 60 3 4341386 4341406 TTCCGCCTGATTCTAATTGAG 58 4341346 4341368 GCTTAGTCTTATAGTATCGAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp113 ENSRNOG00000001341 ENSRNOT00000001815 1 1 1 80 12 19292374 19292392 TCCTGACAAGGACAGTCTC 58 19291846 19292331 TCAAATGTCACCAACTCCTG 58 NA Rattus norvegicus 81 Il11 ENSRNOG00000017386 ENSRNOT00000090636,ENSRNOT00000023489 3 2 2 86 1 72639154 72639174 CTAAAGACTCTGGAGCCAGAG 60 72639222 72642136 TAGGCGAGACATCAAGAGC 59 NA Rattus norvegicus 81 Trh ENSRNOG00000011824 ENSRNOT00000015944 1 1 1 94 4 124112316 124112334 TGGAGAATGTTCAGGTCCG 59 124111753 124112259 GATCCAGGAGTCTAAGGCAG 59 NA Rattus norvegicus 81 Fosb ENSRNOG00000046667 ENSRNOT00000091687 3 1 2 86 1 80218957 80218975 CAACTAGCACAAGCACCAG 59 80217053 80218910 GATCCGTTTCTGTTTCTTCTCG 60 NA Rattus norvegicus 81 Iah1 ENSRNOG00000060853 ENSRNOT00000087180 1 1 1 80 6 43397944 43400006 GACAACCAGGACTTCTCGT 59 43400048 43400068 GAGGTGGAAGAACAGAAACTC 59 NA Rattus norvegicus 81 Mir291b ENSRNOG00000056886 ENSRNOT00000092137 1 1 1 67 1 64537910 64537928 AAGTTGGAACACAGGGTCC 60 64537861 64537879 AAATGGATGCACTTTCCCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rtcd1 ENSRNOG00000014575 ENSRNOT00000020149 1 1 1 80 2 219547061 219547079 ATCTGTACGTCAGCATCCA 59 219545115 219547018 CAGCAACAATGATGATTCCG 58 NA Rattus norvegicus 81 Arfgap2 ENSRNOG00000014429 ENSRNOT00000057161 3 1 1 82 3 80090475 80091412 GGCCTATTTCAGAAAGAACCA 58 80091456 80091474 CTTCTGACGTGCTTCACTG 59 NA Rattus norvegicus 81 Nat8b ENSRNOG00000015851 ENSRNOT00000021243 2 1 1 94 4 117606860 117607319 GTGTAGTAGCGGGACTCAG 59 117606784 117606804 TCGCAGATGTGATAAGAAACC 59 NA InUTR Rattus norvegicus 81 Alkbh6 ENSRNOG00000025216 ENSRNOT00000051259 3 1 1 95 1 88770222 88770240 CAAAGTGTCTGACCTCAGC 59 88770299 88770531 TCTTCATGAGGCATGATGC 58 NA Rattus norvegicus 81 Fyttd1 ENSRNOG00000034233 ENSRNOT00000080568,ENSRNOT00000042240,ENSRNOT00000050535 3 3 3 129 11 71117905 71117925 CGATTAACTCGTACTGCTGTG 59 71116664 71117814 TCAACGTCATCCCTGTCTG 59 NA Rattus norvegicus 81 Olr210 ENSRNOG00000029365 ENSRNOT00000042820 2 1 1 60 1 170796296 170796316 GAAGTGGATTCATCTTGGAGG 59 170796338 170796356 GCACAGAGCAATTCAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Oit3 ENSRNOG00000046365 ENSRNOT00000075682 1 1 1 80 20 29017307 29020347 CTTGCGAAGACATCGAAGG 59 29017245 29017265 ACTGATAACCCTTCTCAGACC 59 NA Rattus norvegicus 81 Ranbp10 ENSRNOG00000018000 ENSRNOT00000024891 3 1 1 80 19 37738440 37738758 CAGAGATGTTGCAGGATGC 59 37738378 37738396 TGGGATCAAGCTGATGACC 60 NA Rattus norvegicus 81 Kars ENSRNOG00000019456 ENSRNOT00000046126 3 1 1 80 19 44216531 44217378 TTGATAAGCTTGTGGGAGAG 57 44216470 44216488 GACTCATGATCTGTGGGTG 58 NA Rattus norvegicus 81 Cdk5rap3 ENSRNOG00000048747 ENSRNOT00000071719 1 1 1 80 10 84781220 84781547 CTCACCGAGGTATGTGGAC 60 84781158 84781177 TCCTTCTTCAGAGCCAACAG 60 NA Rattus norvegicus 81 Abcc8 ENSRNOG00000021130 ENSRNOT00000028696,ENSRNOT00000038798 3 2 2 80 1 102126638 102126656 GATGACAAGAGGACAGTGG 58 102125292 102126597 ATCCTTCATAGCAATGATCCAG 58 NA Rattus norvegicus 81 Magi1 ENSRNOG00000022060 ENSRNOT00000083271,ENSRNOT00000037848,ENSRNOT00000071315 3 3 3 80 4 125716804 125718358 GGGAACCCATTTATATCGGTC 58 125716744 125716765 TTAATTCATCTCCAGACCTCAG 57 NA Rattus norvegicus 81 Taf9 ENSRNOG00000051258 ENSRNOT00000076294,ENSRNOT00000076434,ENSRNOT00000076484,ENSRNOT00000076061 1 4 5 82 2 30666646 30667396 CTCGGGAAGTCTGATCACC 60 30667441 30667460 CATCATCTGTGCGTCTTTCG 60 NA InUTR Rattus norvegicus 81 Apip ENSRNOG00000007446 ENSRNOT00000009797 3 1 1 80 3 92986508 92986527 GGAATCAGCTTGAAGCATGG 60 92989910 92991352 CATGTCTTCTGGCTGAATGC 60 NA Rattus norvegicus 81 LOC686013 ENSRNOG00000005533 ENSRNOT00000007407 3 1 1 81 19 25125554 25125574 CGCTTGGAACAGTTAGTTCTC 59 25125617 25125709 AGCAGGAGATGCTCAAAGG 60 NA Rattus norvegicus 81 Rn60_5_0814.23 ENSRNOG00000051022 ENSRNOT00000076135 3 1 1 61 5 77605864 77605885 GATACAAAGCTAGAGAACTGCA 58 77605096 77605843 TGTCTGGGATCTTGATTTCC 57 NA DesignNoJunction Rattus norvegicus 81 Unc13a ENSRNOG00000018452 ENSRNOT00000025162 2 1 1 80 16 20079726 20080337 TTAGCATCACGGTGGTCTG 60 20079664 20079682 CCTGGACGGTGACATAAGG 60 NA Rattus norvegicus 81 Wdr37 ENSRNOG00000016834 ENSRNOT00000022688 1 1 1 80 17 58006223 58006244 ATACGAAGAACTAACAGCTCAG 58 58006282 58010773 CGGTAGTTTAGAATCTTGTCCT 58 NA Rattus norvegicus 81 Krt80 ENSRNOG00000025994 ENSRNOT00000029697 1 1 1 80 7 143004523 143004542 ACTGGAAACCAAACTCAAGG 58 142998276 143004481 GTAAGGTCTTTCAGCTCCTG 58 NA Rattus norvegicus 81 LOC679894 ENSRNOG00000042340 ENSRNOT00000061664 3 1 1 60 14 6582806 6582827 AGAGAATGTTAAAGGAGGAGAG 57 6582767 6582787 GGAAACAGGTGATTTCAAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Musk ENSRNOG00000033567 ENSRNOT00000048457 3 1 1 80 5 75448147 75462929 GGAAATGCTGTTTCTTCAGG 57 75462971 75462990 TGTGATAAAGAGCTGGAGTC 57 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245,ENSRNOT00000076914,ENSRNOT00000076173,ENSRNOT00000076432,ENSRNOT00000076849 1 6 6 60 14 44526419 44526437 TGTGTATGCTCACTTCCCT 58 44526461 44526479 GATTTCAACCAGAGACCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017006.1 ENSRNOG00000049239 ENSRNOT00000072599 2 1 1 80 15 5907466 5907484 GATTGCACTGGAAGAGTCC 58 5907528 5907730 AATCCTCCAGTTTCGTGGA 59 NA Rattus norvegicus 81 AABR07017006.1 ENSRNOG00000049239 ENSRNOT00000072599 3 1 1 81 15 5907466 5907484 GATTGCACTGGAAGAGTCC 58 5907529 5907731 CAATCCTCCAGTTTCGTGG 59 NA Rattus norvegicus 81 Glod4 ENSRNOG00000007788 ENSRNOT00000010386 2 1 1 80 10 64392510 64394082 GGCAATGACTTCATGGGAC 59 64392448 64392466 TTTACTGAGTGGCCACTCC 59 NA Rattus norvegicus 81 Wdr53 ENSRNOG00000001754 ENSRNOT00000002392 1 1 1 80 11 71788068 71791782 GGATATGCAGGTAATGCTGTG 59 71788008 71788027 TCCTCTGTTTCATCCTCCTG 59 NA Rattus norvegicus 81 RGD1561282 ENSRNOG00000043071 ENSRNOT00000066837 1 1 1 116 3 177164472 177165902 GAGAGGCCTATGGTACCTC 58 177165982 177166000 GAGTACCTCCTGGACACTG 59 NA InUTR Rattus norvegicus 81 Rn60_14_0866.3 ENSRNOG00000026873 ENSRNOT00000037005 1 1 1 60 14 85893332 85893353 CGTATTTAGATTCAGAACCCAC 57 85893293 85893312 ATAGATCATGCCAAAGCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Galr2 ENSRNOG00000061733 ENSRNOT00000012523,ENSRNOT00000075548 2 2 2 88 10 105157114 105157132 GCAAGGCTGTTCATTTCCT 59 105157184 105158209 GATGGCCAGATACCTGTCC 60 NA Rattus norvegicus 81 LOC100360056 ENSRNOG00000031802 ENSRNOT00000051411 3 1 1 60 1 141218105 141218126 GCTTTATTAAGAAGGTCTGGGT 58 141218147 141218165 ATTTCCTGGTAAACCTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snx13 ENSRNOG00000004186 ENSRNOT00000084661,ENSRNOT00000005637 2 2 2 80 6 54561928 54561947 ATGACCTTTCAAGTGTGACG 59 54561988 54566985 CATGATCATTACAAACGCCAG 58 NA Rattus norvegicus 81 Tas2r110 ENSRNOG00000050637 ENSRNOT00000040860 1 1 1 60 4 167130749 167130767 GCCCGCATTTGATTATGAG 57 167130707 167130725 TTCACCACCCAGATAACAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krt84 ENSRNOG00000008819 ENSRNOT00000083466,ENSRNOT00000011732 1 2 2 80 7 143185977 143187022 CATTGATAAGGTAAGGTTTCTGGAG 60 143185921 143185940 GCACATTTCTGGTCTTGGAG 59 NA Rattus norvegicus 81 Fam183b ENSRNOG00000002873 ENSRNOT00000003841 1 1 1 80 10 44736737 44740330 CCACATCCCTTGATCAACC 58 44736675 44736696 TTTGTACAGAGTGATGTCATGG 59 NA Rattus norvegicus 81 Rn60_4_0553.2 ENSRNOG00000007658 ENSRNOT00000010055 3 1 1 60 4 55539611 55539631 GAAGTCCACTGAACTGATTCG 59 55539653 55539671 CTGAGCAATTTCTCGCACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr85 ENSRNOG00000024636 ENSRNOT00000039005 2 1 1 185 4 40384295 40385270 CAGCATATTCCAGATATTCTGATGG 60 40384134 40384156 CATAGATGGATGGAGGATAAGGA 59 NA InUTR Rattus norvegicus 81 Srl ENSRNOG00000005269 ENSRNOT00000048687 2 1 1 80 10 11278071 11281208 AAGCAACAAGAAAGAGGTTACC 59 11281247 11281267 AAAGACAACGAAGATGAGGTC 58 NA Rattus norvegicus 81 Olr757 ENSRNOG00000032386 ENSRNOT00000041799 2 1 1 60 3 102630306 102630326 TTGCATGACTCAGATATGCTC 58 102630348 102630366 TATGAGCAGCACCATCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Amacr ENSRNOG00000018662 ENSRNOT00000025323,ENSRNOT00000040701 3 2 2 92 2 60956297 60956316 CTACACAACCTACAAGACCG 58 60956370 60960587 AGTCCAAGTCCTTTAAGCAG 58 NA Rattus norvegicus 81 Fgf21 ENSRNOG00000020990 ENSRNOT00000028490 3 1 1 80 1 101596481 101596596 GCAGTCCAGAAAGTCTCCT 59 101596419 101596439 GAAACCTAGAGGCTTTGACAC 59 NA Rattus norvegicus 81 Fbxl18 ENSRNOG00000001117 ENSRNOT00000001479 3 1 1 159 12 13734618 13736158 CTGCAGAAGGACTACCAGG 60 13736281 13736299 ACAAGTTCACCTTCACCAG 58 NA DesignNoJunction Rattus norvegicus 81 LOC100909750 ENSRNOG00000009371 ENSRNOT00000012617,ENSRNOT00000043661 1 2 2 81 3 9422204 9427786 GAAGACCCTGAAGGAGGAC 59 9422141 9422160 GTTAGGGTGCTTGATCTCCT 59 NA Rattus norvegicus 81 Olr1249 ENSRNOG00000049611 ENSRNOT00000072284 2 1 1 60 4 1602421 1602442 TTATGTACCTAAAGCCCTCCTC 59 1602462 1602481 AAGACAGAAGACACTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prps1 ENSRNOG00000060262 ENSRNOT00000078582 1 1 1 80 X 111809222 111811308 ATAAGAAGGATAAGAGCCGGG 59 111811349 111811368 TAATATGATCCGCACCTGCT 59 NA Rattus norvegicus 81 Tomm6 ENSRNOG00000046316 ENSRNOT00000070805 3 1 1 89 9 15313570 15313588 GAACTCCGAGGTTCCAGAC 60 15313640 15314347 ATCAAGTTCCTCCGGAAGTC 60 NA Rattus norvegicus 81 Spata25 ENSRNOG00000015744 ENSRNOT00000021143 2 1 1 69 3 161294038 161294056 ACTCATCTGGGTCTTCTGC 59 161293617 161293635 TATAGAGGCCAAGGGACGA 60 NA DesignNoJunction Rattus norvegicus 81 Rbm48 ENSRNOG00000008980 ENSRNOT00000012086 2 1 1 82 4 27699126 27701149 ACAAAGTGCAAGGATAGCT 57 27701195 27701213 ATTCTGGAGCATAGCACAC 58 NA Rattus norvegicus 81 Sgms2 ENSRNOG00000011284 ENSRNOT00000015020 1 1 1 80 2 236472548 236477614 CTGAGATACAAGTCAATAGTGGG 59 236472490 236472514 GTACATAGTTATACAGCGATACAGG 59 NA Rattus norvegicus 81 Appl1 ENSRNOG00000013574 ENSRNOT00000018413 3 1 1 80 16 2580000 2580019 AGTCTGCTCTAGAAGCTGTC 59 2579074 2579957 GTCGAGATTGTCCTCCTGG 60 NA Rattus norvegicus 81 Pdap1 ENSRNOG00000000990 ENSRNOT00000001310,ENSRNOT00000076383 1 2 2 60 12 11247467 11247486 GCTCATTGACATTGAGAACC 57 11247506 11247527 CAGTTGTGTCACCTTCTTAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tas2r109 ENSRNOG00000032724 ENSRNOT00000045376 2 1 1 60 4 166993820 166993840 TTAACCAAATCCTCACCACCT 59 166993861 166993880 AATAGCATGAACCAGAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhrsx ENSRNOG00000028323 ENSRNOT00000029485 3 1 1 176 12 18520757 18521016 GATGGCTGCTGTTCAAGAC 59 18521156 18521174 GTCTACAAGACTCTGCCCA 59 NA DesignNoJunction Rattus norvegicus 81 L3mbtl3 ENSRNOG00000011720 ENSRNOT00000061404 3 1 1 80 1 20093183 20093201 GCTTCTTCCAACTGTTGCT 59 20093241 20093525 CTCTGAATGAATTCTGACACCTC 59 NA Rattus norvegicus 81 Abcc6 ENSRNOG00000028781 ENSRNOT00000042115 1 1 1 80 1 101961196 101961214 TGGTTTGCACAGTGTACAG 58 101960828 101961153 ATCCATGACTAGAACCCTGG 59 NA Rattus norvegicus 81 Olr784 ENSRNOG00000050402 ENSRNOT00000074456 3 1 1 60 3 103217276 103217297 GCACCCAAGATGATTTATGACC 60 103217237 103217258 TACAACCTCCAAATGAGATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcart1 ENSRNOG00000039278 ENSRNOT00000088375 3 1 1 60 5 61123765 61123784 TAAGGAGCATCTGCCTACTG 59 61123724 61123743 ACAGATGAAGTCGTTGACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lmo1 ENSRNOG00000014629 ENSRNOT00000019690,ENSRNOT00000086944 2 2 2 78 1 173730217 173730235 GCTTTCGAGATGGTGATGC 59 173728592 173730176 ATCTCTGATTGCAGAGTTGG 58 NA DesignNoJunction Rattus norvegicus 81 Faf2 ENSRNOG00000017607 ENSRNOT00000091837,ENSRNOT00000064477 1 2 2 80 17 10497042 10497061 GACCTCATCAACCAGTTGAC 59 10493571 10497000 CCTTTCTTCCCTTTCTAGGC 58 NA Rattus norvegicus 81 Ebag9 ENSRNOG00000004220 ENSRNOT00000005705 3 1 1 80 7 83569545 83572528 TAATATGCAGATCTGGCAGAGG 60 83572565 83572587 GGACAGACGAATAATCAACTGTG 60 NA Rattus norvegicus 81 Olr807 ENSRNOG00000032535 ENSRNOT00000048423 2 1 1 60 4 72240574 72240598 CCTAGTTCTCTTATCCTATATCCAG 57 72240613 72240634 CTCTGTGGACTGTATCTTTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Best2 ENSRNOG00000003737 ENSRNOT00000067600 3 1 1 80 19 26126960 26126978 TCCTTCGTTCTGTTAGCAC 58 26126820 26126916 CTCGGGTCATAAATCCAGC 58 NA Rattus norvegicus 81 Sept10 ENSRNOG00000049507 ENSRNOT00000071663,ENSRNOT00000086030 2 2 2 80 20 28762792 28762813 GATGAAGCAGATGTTTGTACAG 58 28757680 28762751 AATTTGGCCTGAAGCTCTC 58 NA Rattus norvegicus 81 Plch1 ENSRNOG00000009955 ENSRNOT00000057724 3 1 1 80 2 154312647 154314562 TCCTCGGTATAGAAGGTTTCAC 59 154312588 154312609 GGTATACTTCATGGTGCAAAGG 60 NA Rattus norvegicus 81 Glyctk ENSRNOG00000046307 ENSRNOT00000074595 3 1 1 81 8 114849744 114850351 TTGTGCTCATCTCAGGTGG 60 114849681 114849699 GTGAGCGTCTGTTTCTCCT 60 NA Rattus norvegicus 81 Tsr3 ENSRNOG00000017858 ENSRNOT00000068336 3 1 1 99 10 14599656 14599782 GAGGAGAACATCGATCCCT 58 14600072 14600090 TGTCATCCGTGTCCATAGG 59 NA Rattus norvegicus 81 RGD1306519 ENSRNOG00000024928 ENSRNOT00000055648 2 1 1 80 2 228663131 228663549 GCAATTCTGGATATGTTCTCAC 58 228663072 228663093 TGACATATTGGTTGATAGCCTG 58 NA Rattus norvegicus 81 B3galnt2 ENSRNOG00000016855 ENSRNOT00000022924,ENSRNOT00000085150 1 2 2 80 17 54036108 54036128 CTTGCCTCATGAATTCATGGA 59 54035537 54036066 AATAGTGCATCGCCTTCCT 59 NA Rattus norvegicus 81 Vwa3a ENSRNOG00000025110 ENSRNOT00000036175 2 1 1 80 1 190713997 190714016 TCCTCTCACCATCAAGTTCC 59 190714058 190714174 AACTTCTTGGCTTTCAGACC 58 NA Rattus norvegicus 81 Ppic ENSRNOG00000017416 ENSRNOT00000023485 2 1 1 81 18 48376465 48376484 CTTCATCACCTTGACCAAGC 59 48372794 48376421 TACCACAGTCATCCCATCC 59 NA Rattus norvegicus 81 Fkbp11 ENSRNOG00000054775 ENSRNOT00000083955 3 1 4 82 7 140400779 140401204 CACATACACTACACGGGCA 60 140400715 140400735 CCAAGTTCTATGACCAGAGGA 59 NA Rattus norvegicus 81 Agpat4 ENSRNOG00000017731 ENSRNOT00000024213,ENSRNOT00000082958 2 2 2 80 1 48724194 48726151 TGACTGCTACGTTAGGAGG 59 48724132 48724150 TAGAGCTTGTGTAGCCAGG 59 NA Rattus norvegicus 81 Pggt1b ENSRNOG00000003541 ENSRNOT00000004723 2 1 1 80 18 40213328 40213348 TTGGATGTGGTGAACAAAGAC 59 40205169 40213289 CAGATTTGACCTGTCTTCTGTG 59 NA Rattus norvegicus 81 Bank1 ENSRNOG00000032247 ENSRNOT00000073875 1 1 2 80 2 241308515 241317579 CTTACATAGCTCAAGTGTTCCA 58 241308456 241308475 TCTTAGGGAGACTGTAGCAC 58 NA Rattus norvegicus 81 Cep97 ENSRNOG00000001609 ENSRNOT00000002191 1 1 1 80 11 47169698 47169719 AGAAAGAGATGAAGAACGTGTG 59 47169760 47173566 TGTAGAGCCCTTACCTCGT 60 NA Rattus norvegicus 81 Mtr ENSRNOG00000017593 ENSRNOT00000023974,ENSRNOT00000083172 1 2 2 80 17 66212084 66212108 GTCTCTACTTCTCCAATGTAAAGTC 59 66210950 66212049 TCAAGGCATAATCCTCAATCTG 58 NA Rattus norvegicus 81 Trim36 ENSRNOG00000016612 ENSRNOT00000022294,ENSRNOT00000080812 3 2 2 80 18 40096573 40096591 TCAGGAAGTGCTGAAGGAG 59 40096313 40096534 GTAGCTTTCTGTATTCTGAGATGG 59 NA Rattus norvegicus 81 RGD1562953 ENSRNOG00000033843 ENSRNOT00000041410 3 1 1 60 1 282064555 282064573 ACAGGTGAACTCGGAAGAC 59 282064595 282064615 ATTGGTCCTAATAGCTTCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0691.3 ENSRNOG00000051099 ENSRNOT00000075910 2 1 1 60 X 68175197 68175215 ACACTTCCTTCGTTGAGAC 57 68175155 68175176 AGGACTACAAACACTACTCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr782 ENSRNOG00000047084 ENSRNOT00000074043 2 1 1 60 3 103171958 103171980 GTTATCTAAAGCCCTTTCCACTC 59 103171920 103171940 CCCAAAGAACAAGATGACCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 MGC95210 ENSRNOG00000024780 ENSRNOT00000037371 3 1 1 82 10 102200959 102200977 GAAAGGTGTAGGGAGACGG 60 102201022 102203780 AATCACTCAGGCTCTTCCTC 59 NA InUTR Rattus norvegicus 81 Pgls ENSRNOG00000018326 ENSRNOT00000024827 1 1 1 60 16 20023811 20023830 AGGACTATGCCAGGAAACTG 60 20024310 20024328 AGGTCAAACACAGGGACAG 60 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0674.1 ENSRNOG00000051153 ENSRNOT00000076788 2 1 1 60 X 66474536 66474556 GCACCATAAACTGCTTAGACC 59 66474577 66474596 TCCATGATGCCAAAGTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Elovl6 ENSRNOG00000048949 ENSRNOT00000071270 3 1 1 83 2 234452426 234476258 GTCTTCAGTATATTCGGTGCTC 59 234476302 234476320 ACAAACTGACTGCTTCAGG 58 NA Rattus norvegicus 81 Sdr42e1 ENSRNOG00000051819 ENSRNOT00000079760 1 1 1 80 19 50211241 50220391 CTGTCATCTGCCTCTGTCC 60 50211179 50211198 TAATGAGGACGGTTTCCTCC 59 NA InUTR Rattus norvegicus 81 Ppp2r4 ENSRNOG00000018457 ENSRNOT00000024914 2 1 1 80 3 9001911 9001930 GTTGTCTCTGCAAGATTGGT 59 9001969 9002521 CCTCAAGATACCTATCAAACACC 59 NA Rattus norvegicus 81 Olr773 ENSRNOG00000048326 ENSRNOT00000071260 2 1 1 60 3 102948526 102948545 GGTTGGACAAATTTCTTGCT 57 102948567 102948586 ATGGCTGGATTTAGGAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nudt7 ENSRNOG00000011976 ENSRNOT00000034012 3 1 1 83 19 46455888 46458655 GGAGTCTGTCAGAAACAATCTG 59 46458697 46458717 GACAAGTGGGAATATCTGGTC 58 NA Rattus norvegicus 81 Igflr1 ENSRNOG00000020957 ENSRNOT00000028442 1 1 1 80 1 89020577 89020597 TTCTGGAACTCTAACAAGAGG 57 89020639 89020999 CGCAAACTCGTAATCAGGA 58 NA Rattus norvegicus 81 Rn60_7_1412.3 ENSRNOG00000059206 ENSRNOT00000090076 2 1 1 115 7 143369844 143370410 TTCATCAACAAGGTTGCGC 60 143369747 143369765 CATAAACAGGCTCCAGGCT 60 NA Rattus norvegicus 81 Ngly1 ENSRNOG00000006143 ENSRNOT00000008289 1 1 1 80 15 10419686 10422099 TGGGCTTAATAAGCAGAGAC 57 10419625 10419645 ACAAGCTCCACAATTATCCTC 58 NA Rattus norvegicus 81 Cd28 ENSRNOG00000010283 ENSRNOT00000013701 3 1 1 114 9 67566735 67566753 CTCAGACGTCTCCTAAGCT 58 67566829 67571163 TTCCTTCTGCTATTTGTCCAG 58 NA Rattus norvegicus 81 Hoxa11 ENSRNOG00000059870 ENSRNOT00000010256 2 1 1 183 4 82214393 82214411 CAACTTCAAGTTCGGACGG 59 82212818 82212837 TATTTGGTATAAGGGCAGCG 58 NA DesignNoJunction Rattus norvegicus 81 AABR07004232.1 ENSRNOG00000048904 ENSRNOT00000075481 2 1 1 60 1 131585136 131585154 AACACATGGAAACAACCCT 58 131585094 131585112 GTATCTACCGCTCCTTGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cacybp ENSRNOG00000002572 ENSRNOT00000003586,ENSRNOT00000076990 3 2 3 85 13 77952926 77954663 GTAATTATGGATGGGATCAGTCAG 59 77952864 77952882 CACATTCTCAGCAGGAACC 59 NA Rattus norvegicus 81 Men1 ENSRNOG00000021054 ENSRNOT00000028592 2 1 1 80 1 221705330 221706190 TTCATCACAGGCACTAAACTG 59 221706231 221706250 ATCTCTGAGACCTAGAGCCT 59 NA Rattus norvegicus 81 Pla2g2a ENSRNOG00000016945 ENSRNOT00000022827 3 1 1 86 5 157284237 157284255 CTGGAGAAACGTGGATGTG 59 157284305 157284894 GTCCTGGTTTGTAGAGCAG 58 NA Rattus norvegicus 81 Ube2e1 ENSRNOG00000008794 ENSRNOT00000011653 3 1 1 80 15 8175744 8175764 ATGAAGGTGGAGTCTTCTTCC 60 8175803 8176468 TTGTACGAAACGTAACCTTTGG 60 NA Rattus norvegicus 81 AABR07051730.1 ENSRNOG00000054128 ENSRNOT00000058331 3 1 1 60 3 20304133 20304154 CCAATTTACAATCTGGTGTCCC 60 20304173 20304193 GAATAATCTGTCCCAGACCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgef3 ENSRNOG00000014363 ENSRNOT00000087873,ENSRNOT00000019511 1 2 2 80 16 3020308 3020328 AAAGATTCCCTGATTGACAGC 59 3020370 3023051 AACATGGAGTTTCACACCC 58 NA Rattus norvegicus 81 Bud31 ENSRNOG00000000989 ENSRNOT00000001307,ENSRNOT00000076423,ENSRNOT00000076149,ENSRNOT00000088603 1 4 4 80 12 11235613 11235631 CTTCAGGATCCATCACCAG 57 11234574 11235572 TCATAGAGTTCTCTGCTTATGG 57 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000076035,ENSRNOT00000090799 3 2 6 80 5 47907011 47907031 GCACAAGTTATCCTTCCTCAG 59 47907071 47907162 TGAGCCTCTTCTAACAACCTC 60 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000077040,ENSRNOT00000067610 1 2 6 80 5 48012403 48013303 CAAGCACAAGGTCTTCAGC 60 48013346 48013365 AGGATAAGGTCTGAGAAGCC 59 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000076388,ENSRNOT00000090799 3 2 6 96 5 48007754 48007773 AAAGTCCTCAGGAGTTGCTC 60 48007832 48008872 GTGAGGAGCCTAGAATCGG 59 NA Rattus norvegicus 81 Dda1 ENSRNOG00000039417 ENSRNOT00000060404 2 1 1 103 16 19881161 19881179 AACTTCAGCAGATTCCACG 58 19881323 19883092 GTCACGATGATCTGCTCTG 58 NA Rattus norvegicus 81 LOC100911042 ENSRNOG00000048188 ENSRNOT00000072227 1 1 1 60 11 71749985 71750005 GAAACCACAACCCTGATATCC 59 71748536 71749965 CTTGGAGCTTGTTGTCTACTC 59 NA DesignNoJunction Rattus norvegicus 81 LOC102551208 ENSRNOG00000018463 ENSRNOT00000024921 2 1 1 60 5 135997109 135997128 GCTCTGAAATTACCACCAGG 59 135997151 135997169 GTCGGGTCTCATCAATGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102551208 ENSRNOG00000018463 ENSRNOT00000024921 3 1 1 60 5 135997108 135997127 GGCTCTGAAATTACCACCAG 59 135997150 135997168 TCGGGTCTCATCAATGCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047606.1 ENSRNOG00000032999 ENSRNOT00000046713 2 1 1 80 5 39689179 39689251 CAAGAGTCCAGTGAGACTG 57 39689117 39689137 CTCTAAATCTCCAGAGGTGTG 58 NA Rattus norvegicus 81 Tuba4a ENSRNOG00000003597 ENSRNOT00000004797 3 1 1 80 9 82417012 82417287 GGAGCCTACTGTAATTGATGAG 59 82416953 82416971 TCCTTCCCAGTGATAAGCT 58 NA Rattus norvegicus 81 LOC689968 ENSRNOG00000042265 ENSRNOT00000066536 3 1 1 80 10 31651144 31656927 TCAACCAGGAAGCAATTCG 59 31656969 31656989 CTCACAAGAACTAGAAGCAGC 59 NA Rattus norvegicus 81 Itpr1 ENSRNOG00000007104 ENSRNOT00000040255,ENSRNOT00000064025,ENSRNOT00000041130,ENSRNOT00000043646,ENSRNOT00000082723 3 5 5 80 4 140536482 140541695 CTGGGAGCTTTCAATGTCTG 59 140541738 140541756 GTAGCCTCTGGTGAAGGTC 60 NA Rattus norvegicus 81 Tmem164 ENSRNOG00000012787 ENSRNOT00000068431 2 1 1 81 X 114016394 114041553 CTACCGTCATCTTCAAGTTACAG 59 114041594 114041612 AGCCGGGTATTTACCACAG 60 NA Rattus norvegicus 81 LOC685563 ENSRNOG00000049069 ENSRNOT00000049147 2 1 1 129 16 68526 69721 ATTTATTTCATCAGGCACTCCC 59 68418 68436 CCTCCACATAGGATGCTGG 60 NA Rattus norvegicus 81 LOC685563 ENSRNOG00000049069 ENSRNOT00000049147 3 1 1 135 16 68526 69721 ATTTATTTCATCAGGCACTCCC 59 68412 68430 TCTTTGCCTCCACATAGGA 58 NA Rattus norvegicus 81 Sh3glb2 ENSRNOG00000017295 ENSRNOT00000023527,ENSRNOT00000085042 2 2 2 80 3 8910776 8910795 CACCTACTATGCACAGTGCT 60 8910318 8910455 CCTGGAAATATGGCACCCT 60 NA Rattus norvegicus 81 Cap1 ENSRNOG00000013492 ENSRNOT00000018711 2 1 1 80 5 140561253 140561606 TCAAAGTTCAGGTGATGGGA 59 140561192 140561212 AGTTCTTACTCAGGTAAGCGT 59 NA Rattus norvegicus 81 AABR07055532.1 ENSRNOG00000032529 ENSRNOT00000045741 3 1 1 80 7 5423745 5423766 TCATCTACATCAAACCTTCAGC 59 5423807 5423826 ATGGGTTCAAGGAAGTGGT 59 NA Rattus norvegicus 81 Tex43 ENSRNOG00000023034 ENSRNOT00000039486 2 1 1 85 18 51680897 51680915 AAAGCAAGGGATGATCCCA 59 51680961 51682773 CTTCTGCTTGCTTTAGATTGAC 58 NA Rattus norvegicus 81 Ccne1 ENSRNOG00000014786 ENSRNOT00000020014 2 1 1 80 1 94486983 94487100 GAAGGTCTCAGGTTATCAGTG 58 94486923 94486941 ATCTCCCGGATAACCATGG 59 NA Rattus norvegicus 81 Ccne1 ENSRNOG00000014786 ENSRNOT00000020014 3 1 1 81 1 94486983 94487101 AGAAGGTCTCAGGTTATCAGTG 59 94486923 94486941 ATCTCCCGGATAACCATGG 59 NA Rattus norvegicus 81 Traf2 ENSRNOG00000006238 ENSRNOT00000008253 2 1 1 81 3 2754358 2754376 CTACACTACGAGGTCTGCC 59 2753650 2754313 GGTCCTGAAGCTTCTCCTG 60 NA Rattus norvegicus 81 Spink10 ENSRNOG00000043250 ENSRNOT00000039466 1 1 1 80 18 57978745 57980738 CAAGTCCGTCATAAGCCAG 58 57980778 57980800 CCCACAGACTGGATTAATTTCTC 59 NA Rattus norvegicus 81 Zfp382 ENSRNOG00000020777 ENSRNOT00000087931,ENSRNOT00000028187,ENSRNOT00000080555 2 3 3 81 1 88587104 88587122 ACATGATCCGCAAGTTGGA 60 88587163 88590622 TCTTCATCTTCCAGATAGCTCTG 60 NA Rattus norvegicus 81 Olr1505 ENSRNOG00000029537 ENSRNOT00000041318 3 1 1 80 10 60352570 60405710 CGTTCTGTGAGGACAATATAATCC 60 60352513 60352533 TATAAATGTCAGAGCAGGCCA 59 NA Rattus norvegicus 81 Pm20d2 ENSRNOG00000007755 ENSRNOT00000060914 1 1 1 80 5 48425356 48425377 ATATGGAGAATGGGAAGAAGCT 59 48420767 48425315 AATCAGTGGAGCCTGAAGG 59 NA Rattus norvegicus 81 Vom2r57 ENSRNOG00000026976 ENSRNOT00000047547 1 1 1 80 7 22931532 22931945 TAGATGCATGCAGGTAAATGAC 59 22931473 22931493 CCTTGATTAACAGTCACTGGG 59 NA Rattus norvegicus 81 Mbtps1 ENSRNOG00000015173 ENSRNOT00000087886,ENSRNOT00000020838 2 2 2 80 19 52163518 52167212 ATTGTGGATAAGCCTGAGTG 58 52163457 52163476 CACTGAGGAGTAGGAGAAGG 59 NA Rattus norvegicus 81 RGD1310712 ENSRNOG00000015560 ENSRNOT00000043788 2 1 2 80 1 163603470 163604786 AAGTCCTTAGCATCTCAACAG 58 163603410 163603429 GTGCAATTGTTGTTAACCGT 58 NA Rattus norvegicus 81 Hes1 ENSRNOG00000001720 ENSRNOT00000002346 3 1 1 117 11 74315030 74315049 TGCCAGCTGATATAATGGAG 57 74314788 74314951 GGCTTTGATGACTTTCTGTG 57 NA Rattus norvegicus 81 AABR07061378.1 ENSRNOG00000059069 ENSRNOT00000073799 1 1 1 60 4 120040889 120040910 TATCAAGCTGGTTTCAAAGCAC 60 120040850 120040868 TCCACCCTTTGTGTTTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp3r1 ENSRNOG00000043210 ENSRNOT00000067846 3 1 1 80 14 100342079 100355170 AAATGTGCTCACACTTCGA 58 100355214 100355232 AACCAGAGTTGTCCAAGTC 57 NA Rattus norvegicus 81 Mat1a ENSRNOG00000011351 ENSRNOT00000081484,ENSRNOT00000015190 1 2 2 80 16 18699876 18704782 TCTAAGACTCAGGTAACAGTTCAG 60 18704821 18704839 AGAGATGACGATGGTGTGG 59 NA Rattus norvegicus 81 RGD1564792 ENSRNOG00000040214 ENSRNOT00000061894 2 1 1 67 4 8256686 8256704 GATGACGGTGATCGTTGTC 59 8256735 8256753 AGCCTTGAGACTTCCTTCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Exoc6b ENSRNOG00000059615 ENSRNOT00000091490,ENSRNOT00000086297 1 2 2 80 4 116714023 116718284 GAAACTCAAGAACCAGGTGAC 59 116712278 116712299 AGCTCTTCCATTGCTATTACCA 60 NA Rattus norvegicus 81 Rn60_12_0174.2 ENSRNOG00000026725 ENSRNOT00000029631 2 1 1 60 12 15206941 15206959 CATGTTTGTGATGGGTGTG 57 15206981 15207001 ATTGCTGACAATCTTGAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr53 ENSRNOG00000031110 ENSRNOT00000043023 3 1 1 60 1 167970605 167970624 CTCCTATTGCTTCCATCCTG 58 167970564 167970585 ACTGTTGATCTTTGTGTCTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtf2ird2 ENSRNOG00000001482 ENSRNOT00000076298,ENSRNOT00000002030 3 2 3 80 12 25533748 25533767 GACAATTACAGCCTTGCCAC 60 25533203 25533708 TAGGAAAGGTCTCTTTACGACG 60 NA Rattus norvegicus 81 Trit1 ENSRNOG00000014274 ENSRNOT00000019587 3 1 1 80 5 140749644 140750006 GAACGTTTCAGAAGATAGCCAG 60 140750045 140750065 GTCAGGTACTCGTGAAATTCC 59 NA Rattus norvegicus 81 Snurf ENSRNOG00000054391 ENSRNOT00000088874 2 1 1 83 1 195091246 195091264 AACTACTGAACAGCACGTG 58 195087603 195091199 AAGTGACACTCTTGGTTGC 58 NA Rattus norvegicus 81 Chp1 ENSRNOG00000004742 ENSRNOT00000056405 1 1 1 80 3 111371572 111371590 AGGATTCCAGAACTTGCCA 59 111371633 111376174 GTTTACCTGATCCTCTCCCT 58 NA Rattus norvegicus 81 Sez6l2 ENSRNOG00000027098 ENSRNOT00000037405 3 1 1 80 1 198392872 198392892 CAGTCCCTCTACGTAGAACTG 59 198392933 198394806 CTCCTCAAAGGCTTCAAACC 59 NA Rattus norvegicus 81 Naa35 ENSRNOG00000018417 ENSRNOT00000025096,ENSRNOT00000090032 2 2 2 80 17 5439627 5439645 CTTTCTGCCATTCACACCT 58 5436742 5439586 CATCATAATTGGATGGTCTCCT 58 NA Rattus norvegicus 81 Lrcol1 ENSRNOG00000037466 ENSRNOT00000056712 2 1 1 87 12 52385715 52385733 CAGGACTAGCAACAACCCA 60 52385536 52385665 TACTTCTCCTTCAGGCTTGC 60 NA Rattus norvegicus 81 Prrx2 ENSRNOG00000058329 ENSRNOT00000083251 3 1 1 104 3 9715230 9715248 GCTGGAGCGTGTATTTGAG 59 9715316 9716215 TGGAACCAGACTTGGACAC 60 NA Rattus norvegicus 81 Stambpl1 ENSRNOG00000050224 ENSRNOT00000075598 1 1 1 80 1 252527988 252528008 CGATCTCGCTAACTACTCTCC 60 252528047 252528916 ACCACTAAATTCTGAACAGCAC 59 NA Rattus norvegicus 81 Rn60_X_0712.1 ENSRNOG00000051290 ENSRNOT00000076792 3 1 1 60 X 70234953 70234974 TACCCTCAATGTATCTGTTGTG 58 70234993 70235013 ATCATACTTGGCAGGTTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Radil ENSRNOG00000024456 ENSRNOT00000033998 2 1 1 84 12 14154728 14155580 TGCAGTTCTAGAAGGAGACG 59 14155627 14155645 GAAGTCCTCTGTGCTGGAG 60 NA Rattus norvegicus 81 Eya4 ENSRNOG00000016627 ENSRNOT00000022362 1 1 1 80 1 23426068 23430285 GGCTCACAACAGGATTACC 58 23430329 23430347 CCCATAGGTTGATGCTGAG 58 NA Rattus norvegicus 81 RGD1359449 ENSRNOG00000059240 ENSRNOT00000090226 1 1 1 80 7 104507961 104508544 CCAGAGTAGCTATAGCCTTCAG 60 104508585 104508603 ACTGGCTATCTGCTTGGTC 60 NA Rattus norvegicus 81 Olr582 ENSRNOG00000046448 ENSRNOT00000043371 2 1 1 60 3 75835340 75835361 GATACGCAGATCAATGAACTGG 60 75835379 75835400 TAGTGCTCAGTTCAATGAAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102552619 ENSRNOG00000027803 ENSRNOT00000035759 1 1 1 80 10 41490286 41491076 TTTGTGAGGCACTCATACCT 59 41490225 41490243 TGTTTCCAGGAAGCTCCAG 60 NA Rattus norvegicus 81 Spaca3 ENSRNOG00000006994 ENSRNOT00000009172 1 1 1 91 10 68233195 68233213 ATCTTCCAGATCAGCAGCC 60 68233268 68233688 TTGCTCAACAAATCCGTGC 60 NA Rattus norvegicus 81 Rb1 ENSRNOG00000016029 ENSRNOT00000021752 1 1 1 80 15 55151796 55153379 AATGGCTACATATAGCAGGAG 57 55151736 55151755 AGTACATTCAGAATCCACGG 57 NA Rattus norvegicus 81 Mttp ENSRNOG00000010655 ENSRNOT00000014631 2 1 1 80 2 243399614 243399633 CGTAGGAAAGGACAACTTGG 59 243394207 243399574 GAGTAGAACTCTTTGACCTTCC 58 NA Rattus norvegicus 81 Phb-ps1 ENSRNOG00000006625 ENSRNOT00000008661 1 1 1 60 10 68925877 68925897 CCTCAGAGATCCTCAAGTCAG 59 68925837 68925858 CGCTGGGTAATCAATTCTTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps17 ENSRNOG00000019106 ENSRNOT00000025888 2 1 1 80 1 143169002 143169515 AGATAGCCGGCTATGTCAC 59 143168940 143168959 CTTCCTGCAACTTGATGGAG 59 NA Rattus norvegicus 81 Trim65 ENSRNOG00000024145 ENSRNOT00000046026 3 1 1 90 10 104678013 104678031 TAGGGTAATGGTTACCCGG 58 104677673 104677960 GGCTGAACTCTCAATCTGAC 58 NA Rattus norvegicus 81 Bpifc ENSRNOG00000022937 ENSRNOT00000037290 2 1 1 80 7 23878142 23878163 CCTGTATAACTCCTTTGCTGAG 59 23878203 23880417 GCAATGGGACAAAGACTCAC 60 NA Rattus norvegicus 81 Olr40 ENSRNOG00000018541 ENSRNOT00000025003 2 1 1 83 1 167605479 167605497 TTCTACCTGTTGCTTCCGT 59 167605285 167605432 TAACCTTACCAGGTGCTGC 60 NA DesignNoJunction Rattus norvegicus 81 Fgr ENSRNOG00000009912 ENSRNOT00000013778,ENSRNOT00000085674 2 2 2 80 5 151185783 151185801 GACTATGAGGCCAGGACAG 59 151185842 151187065 GTCATACTCCGTATTGTTCAGG 59 NA Rattus norvegicus 81 Hinfp ENSRNOG00000009499 ENSRNOT00000012868 2 1 1 80 8 48631354 48631626 ATTGCGAGAGTGTCTTCGA 59 48631292 48631310 CAGCTTGGTATTCACAGCA 58 NA Rattus norvegicus 81 Slc39a8 ENSRNOG00000012508 ENSRNOT00000033413 1 1 1 80 2 241030131 241057262 CACTTCAACCAGTGTCTGTC 59 241057305 241057323 GTTCGAGCTGGTTATCTGG 58 NA Rattus norvegicus 81 LOC100911951 ENSRNOG00000050450 ENSRNOT00000086164,ENSRNOT00000048592,ENSRNOT00000044195,ENSRNOT00000055915 2 4 4 80 1 265551479 265551497 AAGTACACATACCCTGCCC 59 265551294 265551437 CTTGTTCCTGTCCATCTTCTG 59 NA Rattus norvegicus 81 Cyp3a9 ENSRNOG00000001379 ENSRNOT00000087229,ENSRNOT00000001863 1 2 2 80 12 18704470 18704490 GTACCAACCTTTGCTCTTCAC 60 18704528 18707540 CTTCTTTCTGAACCTTTCAGGAC 60 NA Rattus norvegicus 81 LOC683884 ENSRNOG00000018129 ENSRNOT00000024471 3 1 1 93 1 192046267 192048692 GTGTATGACTAAAGTATCAGATGCC 60 192046198 192046218 CATGCATCCTATGTGGTTCAC 60 NA InUTR Rattus norvegicus 81 Nipal2 ENSRNOG00000005190 ENSRNOT00000006943 3 1 1 80 7 73449682 73449700 GCAACTTCACATACTGGGC 59 73417169 73449641 AAAGGTGAATCTGGTTTCTGTG 59 NA Rattus norvegicus 81 Tspan10 ENSRNOG00000046076 ENSRNOT00000071432,ENSRNOT00000070975 1 2 2 80 10 109616705 109616723 CCTCCTTGACCAAGTCCAG 60 109616764 109618492 TTAAAGTACAGGTTCTGTTGCC 59 NA Rattus norvegicus 81 Las1l ENSRNOG00000021748 ENSRNOT00000077045 3 1 3 87 X 65081894 65083639 GTCTAAGAGTAGCACTCTGGG 59 65081827 65081845 TCCTTGGTTCCAGAGAAGG 59 NA Rattus norvegicus 81 Olr623 ENSRNOG00000047555 ENSRNOT00000071021 2 1 1 60 3 76518379 76518400 GACATTTGCTATACCTCCTGTG 59 76518340 76518360 TTCTCCTTACAAGCAGATCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gatad2a ENSRNOG00000022173 ENSRNOT00000027943 3 1 1 81 16 21263846 21264162 TCCGTACTACAGACTTCCAG 58 21264206 21264224 GTGACTGGCTGAAAGTGTG 59 NA Rattus norvegicus 81 Rhobtb2 ENSRNOG00000017373 ENSRNOT00000023876 1 1 1 80 15 51474134 51474155 AGACCTGGATGATATGAAGCTC 60 51468820 51474093 GTGTACTGCTCTGTGAGGG 60 NA Rattus norvegicus 81 Ppib ENSRNOG00000016781 ENSRNOT00000022828 3 1 1 80 8 71722384 71722402 CCATCGTGTCATCAAGGAC 58 71722445 71724391 CCATAGATGCTCTTTCCTCC 58 NA Rattus norvegicus 81 Spta1 ENSRNOG00000003537 ENSRNOT00000066509,ENSRNOT00000004716 3 2 2 80 13 92304489 92304509 AAACTGAAAGAGACCTATGCC 58 92304548 92306168 TAGCAACTTCTCCTCTATCCAG 59 NA Rattus norvegicus 81 Tollip ENSRNOG00000019861 ENSRNOT00000046344 2 1 1 80 1 214833641 214833659 GTGGTATAGCCTGAGTGGG 59 214832426 214833597 GCTGGAAGGGACGTATAGG 59 NA Rattus norvegicus 81 Lrrn3 ENSRNOG00000006368 ENSRNOT00000008655 1 1 1 80 6 61404899 61404917 CTCAACCAAGGAACTGTGC 59 61377056 61404858 GATAGAGGCATTATTCTTGCCT 58 NA InUTR Rattus norvegicus 81 Tada2a ENSRNOG00000002757 ENSRNOT00000003699,ENSRNOT00000087769 1 2 2 80 10 71401901 71405132 ATTGAAAGCCATGCATTGGA 59 71401840 71401858 ATTGGTAATGCCTGCTGTC 58 NA Rattus norvegicus 81 RGD1304704 ENSRNOG00000000340 ENSRNOT00000049255,ENSRNOT00000092002 2 2 2 81 15 4891258 4893410 AAATGAAAGAGGGCTTACCTG 58 4893569 4893588 GCAGCTTCATTAAGAACTGC 58 NA Rattus norvegicus 81 Krt79 ENSRNOG00000058340 ENSRNOT00000081518 2 1 1 80 7 143534834 143534956 TGCTTAAGAAGGATGTAGATGC 58 143534775 143534794 CAATCTCTTGGATCAGGCTC 58 NA Rattus norvegicus 81 Hsdl2 ENSRNOG00000016692 ENSRNOT00000059458 2 1 1 80 5 76823795 76823813 ACACATTGGAAACTCCGAC 58 76823855 76826984 ATGCTTTGGATGTAAGGTAGG 58 NA Rattus norvegicus 81 Mylk4 ENSRNOG00000050349 ENSRNOT00000072764 3 1 1 80 17 33035414 33035433 GTGTGAAGAGAAAGCAACAG 57 33035476 33035576 TTCACATCCTCCTTGTCCT 58 NA Rattus norvegicus 81 Katnal1 ENSRNOG00000000916 ENSRNOT00000001219 3 1 1 80 12 7253520 7253538 TGACAAGGATCTGGTGGAG 59 7253578 7253946 AGATCTGCTATATCATCCCAGTG 59 NA Rattus norvegicus 81 Atad3a ENSRNOG00000018118 ENSRNOT00000045053 2 1 1 80 5 173202070 173202334 TCTTGGAGTCTATCAGGACAG 58 173202010 173202028 CTGTCACTTTGTCCCAGTC 58 NA Rattus norvegicus 81 Nfyb ENSRNOG00000010309 ENSRNOT00000066143,ENSRNOT00000082398 2 2 2 80 7 27094810 27095466 GGCATTCACTAACCAGTTACC 59 27095508 27095526 TAGGACGTCGTGTAAACCA 58 NA Rattus norvegicus 81 Abhd6 ENSRNOG00000008167 ENSRNOT00000080794,ENSRNOT00000012271 2 2 2 80 15 18664542 18675302 ATCTATTATTGGTACTGGCGG 58 18664482 18664503 GGAGTAACAGAACTGATAGTCC 58 NA Rattus norvegicus 81 Tbx18 ENSRNOG00000010685 ENSRNOT00000014657 1 1 1 80 8 95364103 95369911 AGGAACAGAATGGGTTTGGA 59 95364042 95364063 ATCTTCAAAGGTGAGAGTTCGT 60 NA Rattus norvegicus 81 Umps ENSRNOG00000001797 ENSRNOT00000002450 1 1 1 80 11 70037692 70037713 TAGCAACAGTTATCTGTTCAGC 59 70037753 70039395 GGCGCTTAGTACCATAATCC 58 NA Rattus norvegicus 81 Isca2 ENSRNOG00000012085 ENSRNOT00000016089 3 1 1 80 6 108488977 108488996 GAAACAACGTCCTCCATTCC 59 108489038 108489172 GATTTCCAGAAGCCTCTGGA 60 NA Rattus norvegicus 81 Dpp7 ENSRNOG00000012640 ENSRNOT00000017271 3 1 1 80 3 2569431 2569568 TCACCTAGACCTCAGAGCA 59 2569369 2569387 CGAATGAGGGTAGCTTCCA 59 NA Rattus norvegicus 81 Zfp956 ENSRNOG00000026874 ENSRNOT00000059263 1 1 1 80 4 77632510 77632528 CCTGGATCAAGCAAGAGGA 59 77632571 77633336 GCCATGTTTCTGAGCATAGG 59 NA Rattus norvegicus 81 Pitrm1 ENSRNOG00000016511 ENSRNOT00000086236,ENSRNOT00000068174 1 2 2 80 17 68502464 68503548 CCATATTGTCGAGAAACCCAC 59 68503587 68503608 ATCAACTTTCTGATGATCTGGG 58 NA Rattus norvegicus 81 Pitrm1 ENSRNOG00000016511 ENSRNOT00000086236,ENSRNOT00000068174 3 2 2 80 17 68506523 68507494 TACTCTTACAGGGATCCAAACTC 59 68507531 68507552 GAACTTTCCAGATTTAGCCCAG 59 NA Rattus norvegicus 81 Gmnc ENSRNOG00000038505 ENSRNOT00000058701 1 1 1 80 11 77241096 77241115 AGTTTCCCTGTTCCTGACTC 59 77241155 77242080 ATCCTGGAGCTGTTTATTTCTG 59 NA Rattus norvegicus 81 RGD1308878 ENSRNOG00000026782 ENSRNOT00000030001 2 1 1 96 5 162509272 162509290 GATCTTTCATCCCAAGGCA 58 162509350 162511597 GTGGTAACTGTCCAAGCTG 59 NA Rattus norvegicus 81 Mfng ENSRNOG00000008133 ENSRNOT00000011079 3 1 1 89 7 119996530 119996548 GGAGTCAAGACTACCTGGG 59 119990751 119996478 GATGAATGTCTGTTGCCTGG 59 NA Rattus norvegicus 81 Cope ENSRNOG00000020178 ENSRNOT00000027381 1 1 1 80 16 20863400 20863419 AAACCGATACTTGTCACAGC 59 20863262 20863357 AAATCGTTCTCCTTGGCCT 59 NA Rattus norvegicus 81 Jmjd6 ENSRNOG00000000250 ENSRNOT00000064671 2 1 1 80 10 105782081 105783236 GACTCAGACTCGGAGTGTG 60 105782019 105782037 CATGCTGCAAGTTCTCCTC 59 NA Rattus norvegicus 81 Ddx27 ENSRNOG00000008081 ENSRNOT00000010806 1 1 1 80 3 163779886 163779906 GATTATCCGAATGTGTTCCCA 58 163779947 163780054 GAAGCCAGATCTTTCACCTC 58 NA Rattus norvegicus 81 Pgp ENSRNOG00000009536 ENSRNOT00000012720 1 1 1 175 10 13836677 13836695 CATGAAGCTTACCAAGGCC 59 13836926 13836944 TAGGCTTCCCGATGATGTC 59 NA DesignNoJunction Rattus norvegicus 81 Dars2 ENSRNOG00000002813 ENSRNOT00000003828 1 1 1 80 13 78858055 78859800 TTGCCTTAGGGTTAGACAGAC 60 78857995 78858016 AGGATTTAGGGAAGGCTATGAC 60 NA Rattus norvegicus 81 Adarb2 ENSRNOG00000030775 ENSRNOT00000083331,ENSRNOT00000047512 2 2 2 81 17 58161621 58161639 CTGTCACGCTGAGATTGTG 59 58157787 58161576 TTGATGCTTGCTCAAGTGC 60 NA Rattus norvegicus 81 Psmd6 ENSRNOG00000006751 ENSRNOT00000009249 1 1 1 80 15 12408474 12411510 AGATAGGTGACAAGGAGGG 58 12411554 12411572 TATCTAGTCGGTGACCCAG 58 NA Rattus norvegicus 81 Batf ENSRNOG00000008588 ENSRNOT00000011563 2 1 1 87 6 109562843 109562862 ATTACAACCATGCCTCACAG 58 109562912 109565174 CATCATCGGATGAGTCCTG 58 NA InUTR Rattus norvegicus 81 Flcn ENSRNOG00000003302 ENSRNOT00000004412,ENSRNOT00000091052 1 2 2 80 10 46157304 46159912 ACACATGAGACAGGTCTTGG 60 46157243 46157263 TTCCAGATCACCTGATTACCC 59 NA Rattus norvegicus 81 Fezf2 ENSRNOG00000009206 ENSRNOT00000012452 2 1 1 135 15 12829067 12829085 AGGTGCTGAAGGAGAACTC 59 12829184 12829555 TGAGCATTGAACACCTTGC 59 NA Rattus norvegicus 81 Ndufc2 ENSRNOG00000012383 ENSRNOT00000016509 2 1 1 102 1 162370032 162375110 ATGAAAGCAGGTTTGCATCG 60 162375175 162375193 GGTCCCTCACAGCATACAG 60 NA Rattus norvegicus 81 Olr201 ENSRNOG00000017387 ENSRNOT00000023349 3 1 1 60 1 170174746 170174767 TCAATATCTGGTATGGCTTCTC 58 170174707 170174725 ATGAGGGCAACATCTACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sptbn2 ENSRNOG00000058842 ENSRNOT00000088288 2 1 1 80 1 219978394 219978414 ACAACAAGGAGAAGAAGTCAG 58 219978455 219978617 CATTGACATTGGGATACCCT 57 NA Rattus norvegicus 81 Rn60_12_0203.4 ENSRNOG00000058453 ENSRNOT00000089017 2 1 1 60 12 18254310 18254331 CTCCTGTCACCATATCTAATCC 58 18254271 18254292 GTTTCTAAAGAGGTAGATGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sh3rf3 ENSRNOG00000046791 ENSRNOT00000072485 2 1 1 83 20 28652352 28662876 CTCAACATGTACCTGGCTC 58 28662923 28662941 TACACGGTACATCTCACCC 59 NA Rattus norvegicus 81 Tmed10 ENSRNOG00000007901 ENSRNOT00000010512 3 1 1 81 6 109171158 109171182 CCTTTCAGAGTCTATTGTTAACGAC 60 109170478 109171119 GTTTGTGGACTCGTTGGTG 59 NA Rattus norvegicus 81 Wbscr17 ENSRNOG00000024435 ENSRNOT00000076101 1 1 2 80 12 28912971 28912989 TGGTGAAATTGGTCTGCTG 58 28913032 28971114 CAGAGCCATACCTTGATTCC 58 NA Rattus norvegicus 81 Dse ENSRNOG00000000824 ENSRNOT00000088287,ENSRNOT00000001093 1 2 2 80 20 27717879 27717898 TTGACATCAACCACTTTGGC 59 27714549 27717836 TTTGAAACCCTGGCAAGAC 59 NA Rattus norvegicus 81 Sec23a ENSRNOG00000004657 ENSRNOT00000006369,ENSRNOT00000084611 1 2 2 80 6 80092386 80092406 CTGTACCACAAGGAAAGAGAC 58 80086866 80092344 GGAACGTACACTCAAGCAG 59 NA Rattus norvegicus 81 Eif3b ENSRNOG00000001253 ENSRNOT00000060444 1 1 1 80 12 16301272 16301291 AAGTTCAAGCAGATCCAGAG 58 16298829 16301230 AGTCACCAGGTATCTTTCAC 57 NA Rattus norvegicus 81 Smyd2 ENSRNOG00000003583 ENSRNOT00000004783 1 1 1 80 13 108678741 108678759 GTGACCTACAAAGGTACCC 57 108678801 108680570 GATATAGCTGGTGAACACCTC 58 NA Rattus norvegicus 81 Ankrd45 ENSRNOG00000002890 ENSRNOT00000003857 1 1 1 85 13 78979473 78983047 AAACTGCCAGAGGGTACAC 60 78983096 78983114 AACATCCAGTTCCACCAGG 60 NA Rattus norvegicus 81 H2afv ENSRNOG00000052275 ENSRNOT00000082893 2 1 1 70 14 86690148 86694865 GAGTACCTCACAGCTGAGG 59 86690096 86690115 GTGATGCGCTTTACTTTGAG 58 NA DesignNoJunction Rattus norvegicus 81 Nf1 ENSRNOG00000013780 ENSRNOT00000046262,ENSRNOT00000089538 2 2 2 80 10 66919914 66919932 ATCACTGCCAACCTTAACC 58 66919975 66928043 GTTCTCCTTGTCGATTCCTG 58 NA Rattus norvegicus 81 Klk1c9 ENSRNOG00000032857 ENSRNOT00000091964,ENSRNOT00000071416 1 2 5 82 1 100133539 100133557 TTCAGCAAATACCTCTGCG 58 100133601 100134529 TGGTAATTGTTGCTAGAGCAG 59 NA Rattus norvegicus 81 Scarb2 ENSRNOG00000002225 ENSRNOT00000003052 3 1 1 80 14 17098944 17100996 TATTCCTCTGTTGACTGTTGTG 58 17101036 17101055 TGATAAGCTTTCAGCATGGC 59 NA Rattus norvegicus 81 Fut9 ENSRNOG00000008475 ENSRNOT00000011393 3 1 1 126 5 40131988 40237348 GCTGGGATCGATTTAGAATGTG 60 40034636 40034655 AATGCCTTTGGATGTTGAGG 59 NA InUTR Rattus norvegicus 81 Cd209f ENSRNOG00000042317 ENSRNOT00000064859 2 1 1 80 12 2658921 2659309 CTTAAACTCAGCTTCTGGAAAGAG 60 2658864 2658887 CCATTTATCTTCTGCTATGACCAC 60 NA Rattus norvegicus 81 Bcdin3d ENSRNOG00000058430 ENSRNOT00000091538 1 1 1 98 7 141136482 141136500 CTTCGACAGCTCTTCCCTC 60 141133061 141133081 TTTATACAGAGCCATGCTCAG 58 NA DesignNoJunction Rattus norvegicus 81 AABR07073181.1 ENSRNOG00000021437 ENSRNOT00000039341 3 1 1 80 5 155861458 155861476 TCTTCCTTCCACAACCTCC 59 155861519 155861645 GTAGGATGTCACCTTGTCCC 60 NA Rattus norvegicus 81 Retn ENSRNOG00000001001 ENSRNOT00000091197 1 1 2 105 12 2201970 2202150 CTGCCACGTACTTAACAGGA 60 2202218 2202236 ATCCATGGGACACAGTGAC 59 NA InUTR Rattus norvegicus 81 Ctcf ENSRNOG00000017674 ENSRNOT00000023853 2 1 1 80 19 37638493 37641888 AAGTGATTTGGGTGTCCAC 58 37641932 37641950 AACACAGCATCACAGTAGC 58 NA Rattus norvegicus 81 Ywhaz ENSRNOG00000008195 ENSRNOT00000035628,ENSRNOT00000080676 1 2 2 118 7 75578734 75579367 CAAGAAAGGAATTGTGGACCAG 60 75578637 75578655 ACACAGAGAAGTTGAGGGC 60 NA Rattus norvegicus 81 Nsmce1 ENSRNOG00000015218 ENSRNOT00000089464,ENSRNOT00000055034 1 2 2 80 1 196858128 196858147 AAGTACTTCCAGTCTACCGC 59 196857678 196858087 GTCGAAGACTTCTGGTATGTC 58 NA Rattus norvegicus 81 Ptprn ENSRNOG00000019587 ENSRNOT00000026654 2 1 1 80 9 82451236 82451254 GGAGGATGGTGTCAAACAG 58 82450925 82451193 ACCAGGTTCACCTCATAGAC 59 NA Rattus norvegicus 81 Triqk ENSRNOG00000039924 ENSRNOT00000061328 3 1 1 94 5 26559819 26565288 TCGGCATAAAGGAGGTTGG 60 26565345 26565364 GATATTCGTGGACAGTCGGA 59 NA Rattus norvegicus 81 Zc3h4 ENSRNOG00000015229 ENSRNOT00000020509 2 1 1 80 1 78378419 78382289 GAGCTCCTAGATAAGATGTTGG 58 78382329 78382348 CTGCTTCTTCAACTCTTCCA 58 NA Rattus norvegicus 81 Bend5 ENSRNOG00000008025 ENSRNOT00000010628 1 1 1 80 5 131273077 131273099 TCAGTCATGTAGAAGATGATGGG 60 131273139 131275164 CCTCCGGTCTCTTGATGTG 60 NA Rattus norvegicus 81 Bend5 ENSRNOG00000008025 ENSRNOT00000010628 3 1 1 80 5 131290468 131305094 TAGACAATGGCAAGGTCCA 59 131305137 131305156 CTCCTTGGGTAACTTGTAGC 58 NA Rattus norvegicus 81 Rn60_X_0677.1 ENSRNOG00000051129 ENSRNOT00000075885 1 1 1 60 X 66837254 66837273 TTCTTAGACCTCGTGAAGCC 60 66837213 66837231 TGATGTTCACCTGCCTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Upp2 ENSRNOG00000005341 ENSRNOT00000035158 1 1 1 60 3 44806547 44806569 CTAATAGAACCATGAGACCTGAC 58 44806586 44814672 CTAACATACACAGACCGTTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Znf750 ENSRNOG00000046482 ENSRNOT00000074193 3 1 1 78 10 110699716 110699735 CAAGCAGAACAGAGTCTCCA 60 110699543 110699561 AAAGAGGTACTGCTCCCTG 59 NA DesignNoJunction Rattus norvegicus 81 Zfp512b ENSRNOG00000015558 ENSRNOT00000020873 2 1 1 80 3 177082316 177082334 GTGTCCCAAAGAGTTCAGC 59 177081686 177082273 GAAGTCCGGAACCAATTCTC 59 NA Rattus norvegicus 81 Zfp512b ENSRNOG00000015558 ENSRNOT00000020873 3 1 1 81 3 177084813 177084922 GTCACAAGTTGCAGGAAGC 60 177084750 177084768 ATGGTGTGGTAGTTGAGGC 60 NA Rattus norvegicus 81 Miip ENSRNOG00000024139 ENSRNOT00000035695 3 1 1 80 5 164674762 164674781 GCCTACTTCTCTATGCTGCA 60 164674620 164674719 TGGGAATACAGCTTCAGGG 59 NA Rattus norvegicus 81 LOC100909722 ENSRNOG00000050844 ENSRNOT00000073999 1 1 1 128 3 9373345 9377046 TCGCCTCATTCAGCTTCTC 60 9377138 9377156 TGAAGGTCAGCCTTGACTC 59 NA Rattus norvegicus 81 Sntn ENSRNOG00000027383 ENSRNOT00000039347 1 1 1 60 15 14501957 14501976 CCAAGAATCTGCTTCAAACC 57 14498631 14498649 TTTGGCTTGGTTTCCTCTC 58 NA DesignNoJunction Rattus norvegicus 81 Btnl7 ENSRNOG00000050170 ENSRNOT00000073990 2 1 1 80 20 2761309 2761328 TTCATTTACAGCCTGGAGGA 59 2757789 2758151 TCCAGAGTGAAAGTCCAGG 59 NA Rattus norvegicus 81 Car3 ENSRNOG00000010079 ENSRNOT00000014180 2 1 1 80 2 88128970 88129745 AAGACTAAGGGCAAGGAGG 59 88128908 88128926 GTAGGTCCAATAGTCCCGG 59 NA Rattus norvegicus 81 LOC100360573 ENSRNOG00000020093 ENSRNOT00000027225 3 1 1 114 19 38619880 38620034 CAAAGCCTTAGACAAGCGC 60 38620110 38620130 TATCAGGTTGATCTGGTGCTC 60 NA Rattus norvegicus 81 Rsf1 ENSRNOG00000024194 ENSRNOT00000037050 2 1 1 80 1 162660618 162661681 AGACTCTGAAAGTGACTTTAGC 58 162661721 162661740 TTCTGGTTCCTTCTTGATCG 58 NA Rattus norvegicus 81 Tp53bp1 ENSRNOG00000013837 ENSRNOT00000019025 2 1 1 80 3 113211367 113212899 AATCTACCACTTGTAAGGTCTG 58 113211308 113211326 TACCTGCTCCTTTGTTTCC 57 NA Rattus norvegicus 81 Plxnc1 ENSRNOG00000007970 ENSRNOT00000011178 3 1 1 80 7 35967450 35967469 GTTCTACAAGCTCGTTCCTC 58 35963455 35967410 ACTTGAATTCTTCTCACCTCCT 59 NA Rattus norvegicus 81 Olr551 ENSRNOG00000050825 ENSRNOT00000049273 3 1 1 60 3 74990289 74990310 CCTCTAATTTACAGCCTGAGGA 59 74990250 74990270 TACAAATTGACCTCTTGGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mapk3 ENSRNOG00000053583 ENSRNOT00000087625 3 1 1 80 1 198197424 198197442 ACTACCTACAGTCTCTGCC 58 198197486 198197661 GGTCAAGAGCTTTGGAGTC 58 NA Rattus norvegicus 81 Nxph2 ENSRNOG00000040333 ENSRNOT00000062080 3 1 1 60 3 307400 307421 CAGCATATGCAGACAATTTGGA 60 307440 307460 TGAATCTCTGTTCTGTTTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snx1 ENSRNOG00000017029 ENSRNOT00000022960 1 1 1 80 8 71761977 71761996 CACTGATCCTGAGAAGATCG 58 71755121 71757960 AACATCGGTAAGCTTGTCTG 58 NA Rattus norvegicus 81 Slc2a3 ENSRNOG00000008376 ENSRNOT00000085447,ENSRNOT00000088270,ENSRNOT00000011298 1 3 3 80 4 155561269 155561288 GTTACTGTTGCCACAATCGG 60 155560838 155561229 GTCCTTAATGATTGTCTCAGGC 59 NA Rattus norvegicus 81 Slc2a3 ENSRNOG00000008376 ENSRNOT00000085447,ENSRNOT00000088270,ENSRNOT00000011298 3 3 3 81 4 155561270 155561289 TGTTACTGTTGCCACAATCG 59 155560838 155561229 GTCCTTAATGATTGTCTCAGGC 59 NA Rattus norvegicus 81 Acap3 ENSRNOG00000022307 ENSRNOT00000067841,ENSRNOT00000078306 3 2 2 80 5 173344852 173344870 CACCAACAGGCTCTTTGTG 59 173344913 173345156 TGCAGACATTCCGAAATGAC 59 NA Rattus norvegicus 81 Olr987 ENSRNOG00000050676 ENSRNOT00000048882 2 1 1 60 4 13565380 13565400 TGGGTAACTGGTTTCTTAGTC 57 13565340 13565359 AGAAATCCAGTTTGAGTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp27a1 ENSRNOG00000017188 ENSRNOT00000023152 2 1 1 80 9 81995672 81995692 GAATTGCTCAGTCCTCAAGAG 59 81995732 81996994 CAGTGTATTGGATGTCGTGTC 59 NA Rattus norvegicus 81 Scnn1b ENSRNOG00000030981 ENSRNOT00000067138 3 1 1 80 1 191880034 191880054 GTCACTACTTGTACCCTTTGC 59 191880096 191881070 TTAGGTAGCAGTAGGCCCA 60 NA Rattus norvegicus 81 Dmrtc1a ENSRNOG00000048295 ENSRNOT00000074259 1 1 1 66 X 72650456 72650761 GAAGAAGGAGTTCGCACTG 59 72650791 72650809 GAGTTGCTGTGTCAACCTG 59 NA DesignNoJunction Rattus norvegicus 81 Vom1r14 ENSRNOG00000052260 ENSRNOT00000092184 3 1 1 60 1 60281050 60281068 TTGAGTGTCTTCCAAGCCA 59 60281008 60281030 CTTTAAGACCATTAAGGCAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1559999 ENSRNOG00000048778 ENSRNOT00000051054 1 1 1 84 14 15707506 15708295 AATCAAGTCCTAGGGTGCC 59 15707440 15707460 GGGAATCCAAGTCTTTCTGTG 59 NA Rattus norvegicus 81 Dcun1d5 ENSRNOG00000008390 ENSRNOT00000061916 3 1 1 80 8 5439007 5439025 CTGCTAGACTCATCAGTGG 57 5439069 5442677 CATCAGGACCTGCATACTC 57 NA Rattus norvegicus 81 Whamm ENSRNOG00000028113 ENSRNOT00000064667 1 1 1 80 1 143426028 143427519 AAGAGCATATAGGGAGAAGGG 59 143427561 143427579 GACAGGTTTGACAGCATGG 59 NA Rattus norvegicus 81 Zmynd12 ENSRNOG00000022199 ENSRNOT00000064073 3 1 2 80 5 138482348 138482366 GCCCTTCTTCAACTCAGAG 58 138482408 138485638 GACAGAAATATGCACTTTGCC 58 NA Rattus norvegicus 81 Zmynd12 ENSRNOG00000022199 ENSRNOT00000076488 2 1 2 95 5 138504299 138504841 TTACTTGTAGGACACGGGT 58 138504899 138504918 GCAGTCTCTGGTTTCTATCC 58 NA Rattus norvegicus 81 Rmi2 ENSRNOG00000021902 ENSRNOT00000033122 3 1 1 89 10 4905349 4910014 CTGTTCCCAGGAAAGTACGT 60 4905279 4905297 AAGGTCCGTCATCTTCACG 60 NA Rattus norvegicus 81 Ubap2l ENSRNOG00000017990 ENSRNOT00000024364,ENSRNOT00000089042 2 2 2 80 2 189388150 189391390 AAATCCAGACACGCATTCC 59 189388088 189388108 GATTCAGTTTGTCCACCATCC 59 NA Rattus norvegicus 81 Dach2 ENSRNOG00000004869 ENSRNOT00000006907,ENSRNOT00000074811 1 2 2 80 X 85465789 85467457 TGAGGATGTTGAAAGATTCTGG 59 85467498 85467516 CTTGCATAGCAGCACTGTC 59 NA Rattus norvegicus 81 Nenf ENSRNOG00000003833 ENSRNOT00000005190 3 1 1 80 13 109990579 109991744 TCATGACATTTCTGGTCTCAC 58 109990519 109990538 GGGTATTTGGCTTTGTACAC 57 NA Rattus norvegicus 81 Olr577 ENSRNOG00000021658 ENSRNOT00000033519 2 1 1 60 3 75733748 75733766 TGTGACATCTGCTACTCCT 58 75733706 75733727 CTTTAGACAAGAAATCAGCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhox13 ENSRNOG00000028050 ENSRNOT00000035489 1 1 1 80 X 124270904 124274048 CTGAAGTCAAAGTGAAGGTGTG 60 124274087 124274107 TATTTCTCAGCATTGCTCGTC 59 NA Rattus norvegicus 81 Gimd1 ENSRNOG00000042721 ENSRNOT00000064628 1 1 1 80 2 237704806 237704826 GTCCATAGAGCTGATATGCCT 59 237704866 237713509 AGAATCTCCCAGAAGTTCCTG 59 NA Rattus norvegicus 81 Plxdc1 ENSRNOG00000021536 ENSRNOT00000043561 3 1 1 81 10 85904683 85904703 TGGTCTTGTCCTTTGATTTCC 59 85904064 85904640 CCCATGAAGATGAAGCCTC 58 NA Rattus norvegicus 81 Ndufa13 ENSRNOG00000020602 ENSRNOT00000027980 1 1 1 80 16 21281868 21281886 CTGATCGAGGACTTGGAGG 59 21281930 21282035 AAGAATCTGCAGGGTCCTG 59 NA Rattus norvegicus 81 Nudt16l1 ENSRNOG00000003224 ENSRNOT00000004314 1 1 1 90 10 10831525 10831624 CAGTACTGATGCAGATGCG 59 10831453 10831471 TTCAAGCCATCCTCCAGTG 60 NA Rattus norvegicus 81 Nppb ENSRNOG00000008141 ENSRNOT00000010779 2 1 1 82 5 164796397 164796637 CAATCCACGATGCAGAAGC 60 164796683 164796701 CCTTGGTCCTTTGAGAGCT 59 NA Rattus norvegicus 81 Mroh1 ENSRNOG00000030355 ENSRNOT00000081632,ENSRNOT00000051754 3 2 2 81 7 117470993 117471478 TTTCAGATATCTAAGAGCCTGG 57 117471520 117471538 CTTCAAGCTGAACCTCCAG 58 NA Rattus norvegicus 81 Gcfc2 ENSRNOG00000006888 ENSRNOT00000009104 3 1 1 80 4 112671474 112671493 AGTCAGGAAGATGAAAGCCA 59 112671532 112676125 TATACTTTGTCCCTCTGTGATCC 60 NA Rattus norvegicus 81 Psd ENSRNOG00000019435 ENSRNOT00000026378 3 1 1 80 1 266061916 266062039 CTCTACCTGCAGAAGGAGG 59 266061854 266061872 GTGGTGAATGCTAATGGCG 60 NA Rattus norvegicus 81 Lpgat1 ENSRNOG00000004402 ENSRNOT00000064492 3 1 1 80 13 110462436 110465138 ATAAGACAGGAGCCTTTCCT 58 110465181 110465199 GTATCCACACGTTGCTGAG 59 NA Rattus norvegicus 81 Exoc7 ENSRNOG00000046594 ENSRNOT00000068050 3 1 1 81 10 105165972 105165991 TATGAGGATCCAGCTCTGAG 58 105165686 105165928 TCAGCTCAGACTTCTCCAG 58 NA Rattus norvegicus 81 RGD1559575 ENSRNOG00000032396 ENSRNOT00000046438 1 1 1 80 10 34234126 34241768 TTGACAAATAAGCATCCTCCAG 59 34234067 34234086 AAGTTGAGCCGTTAAAGGAG 58 NA Rattus norvegicus 81 Cxcl13 ENSRNOG00000024899 ENSRNOT00000039383 2 1 1 83 14 15254244 15254264 AGGCCAAGAAAGCTATATGTG 58 15253930 15254202 AAGTAATACTTCTGCTTCGGAC 58 NA Rattus norvegicus 81 Mrpl16 ENSRNOG00000021005 ENSRNOT00000028517 3 1 1 65 1 228142912 228143205 TTCAGATACTTGGGCAGCC 60 228143234 228143252 AAAGTTGGAACTGGGAGGA 59 NA DesignNoJunction Rattus norvegicus 81 Tmem57 ENSRNOG00000056156 ENSRNOT00000079536 1 1 1 80 5 153131020 153131038 AGAAGCTCACAATGGACCT 59 153128114 153130976 TGTACTTCCGAAGCTCCTG 59 NA Rattus norvegicus 81 Stab2 ENSRNOG00000038948 ENSRNOT00000059538 1 1 1 80 7 27422795 27424235 GAACCATCATTACAAGAGCCT 58 27422735 27422753 ACACATTCTGACCTCTCCC 59 NA Rattus norvegicus 81 Atg4a ENSRNOG00000050960 ENSRNOT00000074776 2 1 1 81 X 112377445 112396706 AGAACCAGTGGTATTGCCT 59 112396751 112396769 GTATCAACGAAGGTCTGGG 58 NA Rattus norvegicus 81 Hspb2 ENSRNOG00000010402 ENSRNOT00000013960 2 1 1 66 8 55177753 55177771 CGAATTTGCCAACCCTAGC 60 55177282 55177300 GATCTCTTCTGGCAGGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Olr633 ENSRNOG00000049129 ENSRNOT00000040604 2 1 1 60 3 76751996 76752017 GTAATGAGCCAACGTATCTGTG 60 76752037 76752056 GGATACAAGACCCTACCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdgfrb ENSRNOG00000018461 ENSRNOT00000068535,ENSRNOT00000086033,ENSRNOT00000078764 3 3 3 80 18 56400027 56400276 CTAAGAACTGTGTTCACCGAG 59 56400316 56400336 CAAAGTCACAGATCTTGACCA 58 NA Rattus norvegicus 81 AABR07006049.1 ENSRNOG00000046649 ENSRNOT00000068147 3 1 4 88 1 215109216 215109235 TCTTCTTGCTGTCAGTCCAG 60 215057753 215057771 TTACAGCAGCTGGACTGAC 60 NA DesignNoJunction Rattus norvegicus 81 AABR07006049.1 ENSRNOG00000046649 ENSRNOT00000027259 3 1 4 61 1 215411757 215411775 CTGCAAGCCTGTATGTTGC 60 215411714 215411732 TGGAGCAGTTACAGACAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uba1y ENSRNOG00000052326 ENSRNOT00000092178 2 1 1 80 Y 437514 437534 CAAGACTTCACTACCTACTCC 57 437575 443863 TTGCTGTCATCATCCTTCTC 58 NA Rattus norvegicus 81 Phlpp2 ENSRNOG00000016108 ENSRNOT00000021744 2 1 1 80 19 41740516 41741146 AGATTCAGTTTGTTGACCTGAG 59 41740457 41740475 GGTCTTGTAAAGTGGCAGG 59 NA Rattus norvegicus 81 Rcl1 ENSRNOG00000015491 ENSRNOT00000020809,ENSRNOT00000048910,ENSRNOT00000083511 3 3 3 80 1 247245648 247245668 GAAGCAAGCTTTATAAGGCTG 58 247245707 247248481 GTATAAGGTTGTTCCTGTTTGG 57 NA Rattus norvegicus 81 Ifne ENSRNOG00000024204 ENSRNOT00000029976 3 1 1 60 5 107233439 107233457 CCAAGAGGGACATGTACTG 57 107233479 107233499 GAAGAGAACGAAGATCTGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psmg3 ENSRNOG00000001273 ENSRNOT00000001716 2 1 1 100 12 16899706 16899724 GTTAGTCTCCTTGGAGCCC 60 16899788 16901477 AGACATGGATGAGAGGCTC 59 NA Rattus norvegicus 81 Kctd4 ENSRNOG00000050996 ENSRNOT00000075786 2 1 1 60 15 58016649 58016670 ATTACTTCATTGACAGGGATGG 58 58016687 58016709 CCATTTCGTAGGAAGTTTAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp68 ENSRNOG00000001317 ENSRNOT00000001784,ENSRNOT00000079221 3 2 2 80 12 18161176 18161197 CTGAGCTGATCTTCAATTTGGA 59 18161237 18163389 TTTGGAAATCTGGGATGCTC 58 NA Rattus norvegicus 81 Pitx3 ENSRNOG00000019194 ENSRNOT00000026013 3 1 1 82 1 265888918 265888936 GTCATTGTCAGATGCAGGC 59 265888675 265888872 CCTTCTCCGAGTCACTGTG 60 NA Rattus norvegicus 81 Stmn1 ENSRNOG00000016810 ENSRNOT00000076864,ENSRNOT00000076052,ENSRNOT00000076736,ENSRNOT00000022574 1 4 4 80 5 152682876 152683359 TGGCATCTTCTGATATTCAGGT 59 152683400 152683418 ATCGAGGGCTGAGAATCAG 59 NA Rattus norvegicus 81 Vipas39 ENSRNOG00000049223 ENSRNOT00000079373,ENSRNOT00000073428 1 2 2 80 6 111289760 111291061 TGTGGGAAGTATCTCATGGT 58 111289699 111289717 CCCTTCATCTGTTCACGTC 58 NA Rattus norvegicus 81 LOC100125368 ENSRNOG00000043289 ENSRNOT00000031481 2 1 1 81 7 10896371 10896389 TGGATCCTTCCCAGAAGAG 58 10896017 10896329 TCCAATTTGTAGCCTATAGCAG 58 NA Rattus norvegicus 81 AABR07058466.1 ENSRNOG00000050695 ENSRNOT00000046227 2 1 2 88 7 118492970 118494185 GATTTGCCAGACAGACTCC 58 118494237 118494255 CAAAGTCAGGAATCTGCCT 57 NA Rattus norvegicus 81 Rps16 ENSRNOG00000019578 ENSRNOT00000026576 3 1 1 80 1 85406079 85406188 AATTTATGCTATCCGGCAGTC 59 85405926 85405946 TCCTTCTTAGAGGCTTCATCC 59 NA Rattus norvegicus 81 Rce1 ENSRNOG00000019468 ENSRNOT00000026454,ENSRNOT00000066455 2 2 2 150 1 219863071 219863327 CCTGCTGCTAACTATGATCC 58 219862385 219862403 AACTTGGTTTCGTAGCCAG 58 NA Rattus norvegicus 81 Lacc1 ENSRNOG00000022094 ENSRNOT00000032301 1 1 1 80 15 59214609 59215207 TTTGATCCCAGACATCTTCCT 59 59214549 59214567 TTGAGTGAGCTGAGAGTGG 59 NA Rattus norvegicus 81 Ska1 ENSRNOG00000015275 ENSRNOT00000020637 2 1 1 80 18 70175462 70175483 CATCTATGAGCTCTGTGAAGAG 58 70174936 70175422 TGAAATGACGACCTTTCGTG 59 NA Rattus norvegicus 81 LOC100910858 ENSRNOG00000050271 ENSRNOT00000041690 3 1 1 60 3 77337768 77337787 TTTGCTTCCTGTTCTTCTCC 58 77337810 77337828 AGGATCACCAGATTCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sema4c ENSRNOG00000016254 ENSRNOT00000021956 1 1 2 80 9 43134084 43134104 CGGTTATCCTTCGAAACATGG 60 43133931 43134045 CAAAGTGAGGTTCATTCAACCA 60 NA Rattus norvegicus 81 Vom1r98 ENSRNOG00000052138 ENSRNOT00000086882 3 1 1 60 4 121913026 121913044 TTCTCCAAAGGCAACTCCA 59 121913062 121913086 GAAGCTCATAAACATTAGAAGGGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070892.1 ENSRNOG00000000896 ENSRNOT00000001195 1 1 1 91 8 90304378 90304398 CTTACAAGAAACCAGCTTCAC 58 90304487 90304505 TAATTTGCTCTGCAGCTCC 58 NA DesignNoJunction Rattus norvegicus 81 Smek2 ENSRNOG00000003712 ENSRNOT00000005170 3 1 1 80 14 113570575 113570595 GTCTCCTCCACTTACGTAGAG 59 113570635 113571742 CTCCAAGAGTAGAGATCCGTC 59 NA Rattus norvegicus 81 Catsper2 ENSRNOG00000023064 ENSRNOT00000030019 1 1 1 80 3 113363367 113369840 ACAACATGTTCTTCTCGGAC 58 113363306 113363326 GTACTGCATACCAATGATCCA 58 NA Rattus norvegicus 81 AABR07021239.1 ENSRNOG00000025794 ENSRNOT00000033201 2 1 1 60 13 62524468 62524486 TCCGGTCACAAAGATACGA 59 62524426 62524447 CTCATGTTCCTCAGAAACTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps6ka2 ENSRNOG00000013194 ENSRNOT00000017809 1 1 1 80 1 53443008 53448573 TTTGGTGTGCTCATGTTCG 59 53448617 53448635 GATGAGGGCCATTGTTTCC 59 NA Rattus norvegicus 81 Nfe2l1 ENSRNOG00000008830 ENSRNOT00000067542 3 1 1 80 10 84689834 84690542 GAAATGCAGGCTATGGAAGTG 60 84689774 84689793 GTTGGTGGTAAGAGGGTCTC 60 NA Rattus norvegicus 81 Card9 ENSRNOG00000051470 ENSRNOT00000091484 1 1 1 80 3 3804028 3804831 ATGATCATCGACGCATCAG 58 3803966 3803984 CTGAACCTTCTTCTGCAGC 59 NA Rattus norvegicus 81 Card9 ENSRNOG00000051470 ENSRNOT00000091484 3 1 1 80 3 3804028 3804832 CATGATCATCGACGCATCAG 59 3803967 3803985 TGAACCTTCTTCTGCAGCT 59 NA Rattus norvegicus 81 Hoxa6 ENSRNOG00000048917 ENSRNOT00000082933,ENSRNOT00000074452,ENSRNOT00000008542 1 3 3 68 4 82262706 82262725 GTACACAAGCCCTGTTTACC 59 82261079 82261097 TGACTCCCATACACAGCAC 59 NA DesignNoJunction Rattus norvegicus 81 Canx ENSRNOG00000003343 ENSRNOT00000049942 1 1 1 80 10 35817003 35818260 CAAATATGACGGAAAGTGGGA 58 35816943 35816963 CGAGACATCAATACAAGTCCT 58 NA Rattus norvegicus 81 Cnot6l ENSRNOG00000002075 ENSRNOT00000002843 2 1 1 80 14 15112196 15121005 TGACAATCTTGCAGTTCATCC 59 15121046 15121065 GATGGCAGAATTTGGTCTCG 59 NA Rattus norvegicus 81 Zfp498 ENSRNOG00000042213 ENSRNOT00000076827,ENSRNOT00000039687 2 2 2 95 12 11779842 11779860 GGAGTTCAGAGCTTAGGCC 60 11779047 11779783 AAGAATGGGCAATGCTTGC 60 NA Rattus norvegicus 81 RGD1561114 ENSRNOG00000030956 ENSRNOT00000057099 3 1 1 97 18 41898796 41898814 CTCTTGCTTTCAACGCCTG 60 41898592 41898735 AAGCATTCTCCACCTGGTC 60 NA Rattus norvegicus 81 Bmp4 ENSRNOG00000009694 ENSRNOT00000012957,ENSRNOT00000083268 1 2 2 91 15 20777229 20778251 ATCACGAAGAACATCTGGAG 58 20777157 20777175 CTCATTCTCTGGGATGCTG 58 NA Rattus norvegicus 81 Vom2r49 ENSRNOG00000050003 ENSRNOT00000049498 2 1 1 80 6 56767201 56773915 ACAATGTCCCACAGATCAG 57 56767139 56767158 GAAACTGGTAAGGAGACTGG 58 NA Rattus norvegicus 81 Wnt6 ENSRNOG00000017409 ENSRNOT00000023439 1 1 1 111 9 82043984 82044002 CAGTTCCAGTTCCGTTTCC 59 82044311 82044329 CAGCGGTAATTGCAAACAC 58 NA DesignNoJunction Rattus norvegicus 81 Wnt6 ENSRNOG00000017409 ENSRNOT00000023439 2 1 1 115 9 82043980 82043998 ATGTCAGTTCCAGTTCCGT 59 82044311 82044329 CAGCGGTAATTGCAAACAC 58 NA DesignNoJunction Rattus norvegicus 81 Olr527 ENSRNOG00000050009 ENSRNOT00000043964 3 1 1 60 3 74448181 74448200 TCTCTGTGCTGTTTCTCCTG 60 74448140 74448159 AGTATCATGCCTGTGTTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065265.1 ENSRNOG00000021751 ENSRNOT00000032968 3 1 1 85 6 117972602 117972651 CCATAAATAACTGTAGTGACCAGG 59 117972540 117972558 GAAGCCATCCACATGAACC 59 NA Rattus norvegicus 81 Galnt3 ENSRNOG00000005727 ENSRNOT00000007615 2 1 1 80 3 52194426 52194445 TGTGCTCTATTCTTCACCTG 57 52189861 52194386 TCATGCAAGTAGTCATCTACAC 58 NA Rattus norvegicus 81 Ereg ENSRNOG00000002771 ENSRNOT00000003716 3 1 1 82 14 18578989 18579669 TACTGCAGATGTGAAGTGGG 60 18578926 18578946 TATTCTCTGCTCAAGGGTTGG 60 NA Rattus norvegicus 81 Smu1 ENSRNOG00000007671 ENSRNOT00000010464 2 1 1 80 5 57048869 57050292 GACGGAAAGATCAAGGTTTGG 60 57048809 57048829 GGTGACACCTTTACTATGTGC 59 NA Rattus norvegicus 81 Arnt ENSRNOG00000031174 ENSRNOT00000064442,ENSRNOT00000044738,ENSRNOT00000091681 1 3 3 80 2 196642703 196645444 CAACGTGAAGAACTCTAGCC 59 196645486 196645505 TTAGTTGTCGGACCTAGCTG 59 NA Rattus norvegicus 81 Diaph3 ENSRNOG00000008986 ENSRNOT00000087940 3 1 2 96 15 70349980 70373803 GCTGACAGATGATATGCTGG 59 70349903 70349921 AGACACAGTCTTCAGCTGG 59 NA Rattus norvegicus 81 Dctn4 ENSRNOG00000019298 ENSRNOT00000026334,ENSRNOT00000026394 3 2 2 80 18 55797274 55797292 CTCACAGCTCTACTTCTGC 58 55797334 55800019 CAATAATGAGAGTCCACCTCG 58 NA Rattus norvegicus 81 Celf5 ENSRNOG00000004695 ENSRNOT00000061219 2 1 1 81 7 11116367 11116387 CCTTCGGCAATATCATCTCCT 60 11116430 11116825 TCAAAGCTCACGAATCCGA 59 NA Rattus norvegicus 81 Smarca5 ENSRNOG00000018149 ENSRNOT00000024568 1 1 1 80 19 30951433 30952171 TGCAAAGGGAATGGTATACTC 58 30952211 30952231 GTCTCATCTTGTCCATCTTCC 58 NA Rattus norvegicus 81 Parp9 ENSRNOG00000023463 ENSRNOT00000030975 2 1 1 81 11 67753006 67755754 ATTACACGGGTACAGGAGC 59 67749571 67749593 GGAATTTGCCATCTATGGTAGTG 60 NA Rattus norvegicus 81 Pmpca ENSRNOG00000026775 ENSRNOT00000031607,ENSRNOT00000031622 1 2 2 80 3 3836883 3837388 CCGAGATGATTCATGAAGCTG 59 3837427 3837448 TCTTCCCTATGTTCTCTACAGG 59 NA Rattus norvegicus 81 Smarcal1 ENSRNOG00000016503 ENSRNOT00000071856,ENSRNOT00000022459 3 2 2 80 9 79957615 79957633 GAAGCTGACCTTTCTGGAG 58 79957677 79959234 TATGGCAAAGCTAACTCCC 57 NA Rattus norvegicus 81 Cxcl3 ENSRNOG00000028043 ENSRNOT00000034090,ENSRNOT00000078746 3 2 2 98 14 18839198 18839216 CCTGAAGACCCTACCAAGG 59 18839001 18839138 AGAGTGGCTATGACTTCTGTC 59 NA Rattus norvegicus 81 Wdr89 ENSRNOG00000021628 ENSRNOT00000006860 3 1 1 70 6 98601673 98605982 TGACGCAGTTCCTGATGAG 60 98601621 98601642 AAACTGGTCCTTAATCTTCTCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Zfp574 ENSRNOG00000055761 ENSRNOT00000079847 3 1 1 60 1 81956987 81957005 CTGGCTGTGATGGAAACTG 59 81957028 81957047 GGTAGATCTCAATGGCCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hmg20b ENSRNOG00000020601 ENSRNOT00000028002,ENSRNOT00000086194 1 2 2 82 7 11239683 11239701 TTGTAGTGGCTGTCAAGCA 60 11239747 11240163 CTTCTTCACTGGCTCCTCC 60 NA Rattus norvegicus 81 Pgm2l1 ENSRNOG00000017079 ENSRNOT00000022963 3 1 1 80 1 165272038 165272675 TTCAGGAGAATGGTCATTGGA 59 165272716 165272735 TCCAGCAATCAAACATCCAC 59 NA Rattus norvegicus 81 Olr862 ENSRNOG00000046223 ENSRNOT00000072067 2 1 1 60 5 137603003 137603023 GTGTCTGTGGTTTCTTCTCTG 59 137602963 137602981 CAATAGGGCAGTCTCATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr152 ENSRNOG00000017211 ENSRNOT00000023119 2 1 1 60 1 169552879 169552898 GTACAGCACCATTCTGACTC 58 169552921 169552939 CCTCACAATGATGCTCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1401 ENSRNOG00000033524 ENSRNOT00000043954 3 1 1 60 10 34805347 34805365 TGATTCAGACAAGCCTCGT 59 34805386 34805407 AAGAAGTGATTCAGTTGGTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Supt7l ENSRNOG00000004927 ENSRNOT00000006543 3 1 1 81 6 26248002 26249530 CATGCTACAGATTAGTAAGCAGC 60 26249570 26249589 AGGCTTAGTGTCTTCTGTGG 60 NA Rattus norvegicus 81 Gpbar1 ENSRNOG00000058260 ENSRNOT00000089698 1 1 1 60 9 81559771 81559790 TACTACTAGCTGGGCTACTC 58 81559813 81559831 CTATTCCATAGCCCAGGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mff ENSRNOG00000015428 ENSRNOT00000077859,ENSRNOT00000020705,ENSRNOT00000089142 1 3 3 85 9 90886919 90886937 TGCTCACACTGAGTGAGAG 59 90886986 90891876 AACTGCTCGGATCTCTTCG 60 NA Rattus norvegicus 81 Pik3ap1 ENSRNOG00000013309 ENSRNOT00000017938,ENSRNOT00000065632,ENSRNOT00000077962 1 3 3 80 1 260577992 260581217 CGATATGATGACAAATCAGAGGG 59 260577934 260577952 GTGAGGTTCTTCAGTCCGT 59 NA Rattus norvegicus 81 Ugp2 ENSRNOG00000008079 ENSRNOT00000067668,ENSRNOT00000081245 2 2 2 82 14 106220072 106232404 GGAAGATTCGATTCAACCCT 58 106220009 106220027 CCACCAGTTTGTTCAACAC 57 NA Rattus norvegicus 81 LOC100909686 ENSRNOG00000046718 ENSRNOT00000072865 1 1 1 60 1 169741866 169741887 CTCTACATAGCCATGTGTTACC 59 169741906 169741926 CGATGACCACATTAGTGAGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpg1 ENSRNOG00000060278 ENSRNOT00000078938 2 1 1 76 6 123034539 123034557 CCAGAGAAGAGGATGAGGG 59 123034596 123042391 ATAACTGACTCCTCGACTGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cubn ENSRNOG00000029047 ENSRNOT00000090064,ENSRNOT00000040052 2 2 2 80 17 80677906 80678737 CGACATCATCTTGTGGTGG 59 80677844 80677862 TTGGATGGTAGTCTGCTGG 59 NA Rattus norvegicus 81 Rfc5 ENSRNOG00000001134 ENSRNOT00000084747 1 1 2 80 12 44932747 44933927 GAGTACCATTCAGAAGTTCATCAG 59 44933966 44933984 GATGTCTTTCCTGTGCCTG 59 NA Rattus norvegicus 81 Hs6st2 ENSRNOG00000030880 ENSRNOT00000040165 1 1 1 80 X 138714261 138714279 AACTTCAACTCAGGTGCCA 60 138678480 138714223 GATATAATGGAAGTTCTTCCCACTC 59 NA Rattus norvegicus 81 Sptlc2 ENSRNOG00000012210 ENSRNOT00000016324,ENSRNOT00000085458 3 2 2 80 6 111381614 111381632 CATCTGTAGTGTGCCTGGA 59 111379848 111381572 CCTGTGTACTTGAATGACCAG 59 NA Rattus norvegicus 81 Hnrnpc ENSRNOG00000011621 ENSRNOT00000090378,ENSRNOT00000060514 3 2 2 82 15 28487482 28487500 GATGACTCTGCTGAGGAGG 59 28487313 28487437 TCATCCTTCAACTCCAGCTG 60 NA Rattus norvegicus 81 Tet3 ENSRNOG00000011387 ENSRNOT00000015296 3 1 1 80 4 115155679 115155697 ACACCAGATCTGCAAACTC 58 115142092 115155636 CGAGCATTTATTTCCACCTC 57 NA Rattus norvegicus 81 Mir6316 ENSRNOG00000049017 ENSRNOT00000075015 3 1 1 60 1 278298682 278298700 CATGTCTGTCTCTGTGGCA 60 278298721 278298742 GACAGACATGTGAAAGTCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr544 ENSRNOG00000031356 ENSRNOT00000051625 2 1 1 60 3 74867788 74867807 TTTATGTACTTGCGTCCCAC 58 74867747 74867767 ACAGAGCAACTACCTTATCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sar1a ENSRNOG00000000557 ENSRNOT00000000673 1 1 3 80 20 31303053 31303072 ACCACTCTTCTTCACATGCT 59 31303114 31303511 CGTCAGTTCTTCTGAAGTGG 59 NA Rattus norvegicus 81 Pmp2 ENSRNOG00000022707 ENSRNOT00000032059 1 1 1 82 2 93829091 93829112 AGAAGTGGGATGGTAAAGAGAC 60 93829150 93830486 CACACCCTTCATTATACATTCCAC 60 NA Rattus norvegicus 81 Ier3 ENSRNOG00000000827 ENSRNOT00000001099,ENSRNOT00000084981 1 2 3 232 20 3439933 3439951 ATCTCCACACCATGACTGG 59 3439612 3439630 CTTGGCAATGTTGGGTTCC 60 NA DesignNoJunction Rattus norvegicus 81 AABR07061382.1 ENSRNOG00000034129 ENSRNOT00000046568 1 1 1 60 4 120157455 120157473 GCTTGGTGGTTACCTTACG 59 120157413 120157432 GGGTTCAAGTCAGTGATGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1501 ENSRNOG00000031966 ENSRNOT00000041085 3 1 1 60 10 60728925 60728944 ATTGGCCTCTACTTGTGTCC 60 60728962 60728985 TAGACATGACAGTATCCTTCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1231 ENSRNOG00000029086 ENSRNOT00000044223 2 1 1 60 4 1471254 1471272 ACATTCTCCCTCTCCTCCA 59 1471295 1471314 AGAACAACCACCTCATTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tacr2 ENSRNOG00000050658 ENSRNOT00000071394 1 1 1 80 20 31900743 31901544 AGAAGAAGTTTGTGAAGGCC 58 31901585 31901605 GGATGAAGTAGAGGTGGTAGG 59 NA Rattus norvegicus 81 Tm6sf1 ENSRNOG00000019662 ENSRNOT00000063873,ENSRNOT00000078500 2 2 2 80 1 143679964 143681987 CCTCTGTTCTACGTGTATGC 58 143682030 143682048 GATGATGCCATCTTGCTCC 59 NA Rattus norvegicus 81 Rab9b ENSRNOG00000047960 ENSRNOT00000074140 1 1 1 146 X 107536277 107542369 CCATTGTGTTGGAACTCGA 58 107534962 107534980 GAGAAGGGATTTCCCACTC 57 NA InUTR Rattus norvegicus 81 LOC100360137 ENSRNOG00000043400 ENSRNOT00000068441 3 1 1 80 4 79015541 79015561 AAGGAGGAACAGAAGAAACTC 58 79015331 79015502 TTTCTTAATTCCACCTGTAGCC 59 NA Rattus norvegicus 81 Akap17b ENSRNOG00000009746 ENSRNOT00000039809 3 1 1 89 X 123220976 123224708 TGAACTGTCTGGGATCCAC 59 123220905 123220923 ATTTCACTGTGGTCCCTGG 60 NA Rattus norvegicus 81 Smim24 ENSRNOG00000048878 ENSRNOT00000075038 3 1 1 97 7 11183675 11184945 TCAAAGCCAAGTAAAGCAGAC 59 11183598 11183616 TCGTCTGAGAACTCCTCCT 59 NA Rattus norvegicus 81 Slc39a2 ENSRNOG00000010375 ENSRNOT00000013786 2 1 1 80 15 28296050 28296069 AGGGTTGATGCATATGACTG 58 28296111 28296366 CCTGTACTATTCTGCACCAC 58 NA Rattus norvegicus 81 Olr312 ENSRNOG00000050629 ENSRNOT00000072701 2 1 1 60 1 213404427 213404446 GTAACAGAGTTTGTGCTGGA 58 213404467 213404487 CTGCCAGGAACAATCTTAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd79a ENSRNOG00000020125 ENSRNOT00000027254 1 1 1 126 1 81765962 81765980 CTTGCTGTTCTGTGCAGTG 60 81767490 81767641 AAGATTCAGGCCCTCATAGAG 59 NA Rattus norvegicus 81 Cd248 ENSRNOG00000020197 ENSRNOT00000027339 2 1 1 60 1 220447463 220447482 GGTGGCTTTGAGTGTTACTG 59 220447502 220447523 TACAACTGATACCATCTGCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mt1m ENSRNOG00000028841 ENSRNOT00000047663 3 1 1 95 20 3677601 3677619 ACAATGCAAATGCACCTCC 59 3677678 3677696 GAAGCCTCTTTGCAGATGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cxcl6 ENSRNOG00000002843 ENSRNOT00000003823 1 1 1 82 14 18861777 18861912 CCAAGGTGGAAGTCATAGCT 60 18861714 18861735 GACTTTCTTTATCAACGGAGCT 59 NA Rattus norvegicus 81 RGD1559810 ENSRNOG00000026207 ENSRNOT00000038249 1 1 1 144 20 36060746 36060764 TGAGGGTGACAGTACATGG 59 36060599 36060640 CCAGACACTTGAATCTTTGCT 59 NA Rattus norvegicus 81 Hpx ENSRNOG00000018257 ENSRNOT00000024710 1 1 1 80 1 170430680 170430780 AGATGTAATCGAACACTGCTC 58 170430620 170430639 TTAAAGAACAGCATGGTCCC 58 NA Rattus norvegicus 81 Wnt3a ENSRNOG00000003039 ENSRNOT00000064505 3 1 1 125 10 45627827 45637954 GTTCTTCTCTGGTCCTTGG 58 45627720 45627738 GATCTCCACGTAGTTCCTG 57 NA Rattus norvegicus 81 Trhr2 ENSRNOG00000012789 ENSRNOT00000017317 2 1 1 88 19 55182148 55183524 GAGTCTTCACCAGGTTGGT 59 55182078 55182096 GAGAACCACGGAGTAGCAG 60 NA InUTR Rattus norvegicus 81 Rbm46 ENSRNOG00000025823 ENSRNOT00000035846 3 1 1 84 2 181861692 181861711 CAGATAAACTCTGCACAACG 57 181831428 181861645 CGACGGAAATTGTAGTCCA 58 NA Rattus norvegicus 81 Tnk2 ENSRNOG00000001769 ENSRNOT00000084768,ENSRNOT00000002411,ENSRNOT00000085568 1 3 3 80 11 71361920 71362390 CCATGAAGATGGTGACAGAG 58 71361859 71361878 CCAAGAGGAAATGACCTTGG 59 NA Rattus norvegicus 81 Rps7 ENSRNOG00000008551 ENSRNOT00000011333 3 1 1 90 6 47899989 47900007 GGATCCGTGTGAAACTGGA 60 47899625 47899936 AAAGTTTCGACCTTGTGCTC 59 NA Rattus norvegicus 81 Crebzf ENSRNOG00000018987 ENSRNOT00000025653 3 1 1 93 1 156294991 156295009 AAGGATAAGGTGTCGGTGG 59 156294705 156294723 GGCAGGAAGGAAATCACCT 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Lyrm1 ENSRNOG00000024530 ENSRNOT00000033673 2 1 1 104 1 189683305 189684960 CCAGACCGATCCATCTACC 59 189685025 189685046 ACTTCAGATACAGTGGTTTGGA 60 NA Rattus norvegicus 81 Megf8 ENSRNOG00000052687 ENSRNOT00000077313 1 1 1 80 1 82213571 82213590 GGACCTGATGCTACTTTGTG 59 82213627 82214217 GACTGAATACCTATACAAGTTTCCC 59 NA Rattus norvegicus 81 Psg16 ENSRNOG00000042250 ENSRNOT00000037086 2 1 3 80 1 79032523 79035425 TTGTACCTCTATGTGTACACCTC 59 79035463 79035483 CGGCACTGATTCAATAGTGAG 59 NA Rattus norvegicus 81 Psg16 ENSRNOG00000042250 ENSRNOT00000037086 3 1 3 80 1 79032524 79035425 TGTACCTCTATGTGTACACCTC 59 79035465 79035484 GCGGCACTGATTCAATAGTG 60 NA Rattus norvegicus 81 Mcm10 ENSRNOG00000017981 ENSRNOT00000024178 1 1 1 80 17 77231442 77231460 GCAAGGGACTGTCATAGGG 60 77231502 77234284 TCGATAGATAAGCACACCTCC 59 NA Rattus norvegicus 81 Ctcfl ENSRNOG00000028661 ENSRNOT00000034131 1 1 1 93 3 171145692 171146269 TGACAAAGGAGAACCTCGG 59 171145617 171145635 GGTAAGGCCTTGATCTGGG 60 NA Rattus norvegicus 81 Rnase4 ENSRNOG00000025625 ENSRNOT00000090272 2 1 2 60 15 28023066 28034119 TTTGCACTTTCTAGGTGACG 59 28034142 28034160 AACAAGAGCAGAAGCAAGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100910921 ENSRNOG00000045694 ENSRNOT00000071001 3 1 1 60 3 74906261 74906279 GTTGCCATCAAACACAGGA 59 74906219 74906241 AACTATAAGGTGGGAAGAACAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr828 ENSRNOG00000048689 ENSRNOT00000051285 2 1 1 60 4 148624167 148624186 GCAAGCCTCTACATTATCCA 58 148624208 148624227 ACAGTAACGAGAAGGAAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptpn2 ENSRNOG00000017453 ENSRNOT00000023763 3 1 1 80 18 63427800 63432289 ATACCTGTCTCGTTCTGATGG 59 63427740 63427764 CCATTCGATACTTTCTCATACTCAG 59 NA Rattus norvegicus 81 Faslg ENSRNOG00000002978 ENSRNOT00000003998 1 1 1 88 13 79704603 79705307 CAGAACTCCGTGAGTTCAC 58 79700587 79700605 TTTGGTTTCAGAGGGTGTG 58 NA Rattus norvegicus 81 Cyp3a9 ENSRNOG00000046643 ENSRNOT00000073099 3 1 1 80 12 19088255 19088274 CTTTGCTCTTCACAAAGACC 57 19075886 19088215 TCCTGATTCTTCTTGTTGTACC 58 NA Rattus norvegicus 81 Olr1589 ENSRNOG00000022387 ENSRNOT00000030794 1 1 1 60 13 92168379 92168400 CTGTGGTTCTCATCTTCTATGG 58 92168421 92168439 TAACTCTTCTTCAGCCGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1593 ENSRNOG00000003521 ENSRNOT00000004674 3 1 1 60 13 92225285 92225304 TTCGCTTGGAAATTCAGAGG 59 92225324 92225345 AGCAATGTATCTGTCAATAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pias4 ENSRNOG00000020230 ENSRNOT00000027441 1 1 1 80 7 11423530 11423768 CAGGTGGTACTGAGGATCTG 59 11423810 11423829 GACTTTCACAGCGATGTTGG 60 NA Rattus norvegicus 81 Rnf19b ENSRNOG00000000123 ENSRNOT00000089457,ENSRNOT00000066268 3 2 2 80 5 147265331 147267759 TACAGCCGGTTAGAAGTTCAG 60 147267800 147267819 GTCACTAATTGCACCAAGGC 60 NA Rattus norvegicus 81 AABR07006055.1 ENSRNOG00000024991 ENSRNOT00000034299 2 1 1 124 1 215363190 215363262 CAAGCCTGTTTGCTGTCAG 60 215363084 215363102 GCTTACAACAGCTGGACTG 59 NA Rattus norvegicus 81 Lpar6 ENSRNOG00000015577 ENSRNOT00000021430 2 1 1 60 15 55128439 55128458 TCACTTCAGACACGATCCAG 60 55128479 55128499 TCACTCCTTCTAACAGACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tppp2 ENSRNOG00000025473 ENSRNOT00000048723 1 1 1 80 15 28319277 28319296 AAAGACTGTGGCATCATGGA 60 28319336 28320074 ATTCTTGGCCTTCACTTTACTG 59 NA Rattus norvegicus 81 AABR07019102.1 ENSRNOG00000032106 ENSRNOT00000051173 2 1 1 80 15 89348087 89348108 GGCTATGATGTTGAAGACCAG 59 89348027 89348047 CAGTCTCATTACGCATGATCC 59 NA Rattus norvegicus 81 Olr659 ENSRNOG00000048520 ENSRNOT00000047910 3 1 1 60 3 77415093 77415113 TCTATGTCTTCTCTGTGGTGG 59 77415134 77415153 AGTTGGCTGTTTGTAATGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp608 ENSRNOG00000023197 ENSRNOT00000033254 3 1 1 81 18 49838829 49838852 CTGTAGAAATGAAGTCTGTCATGG 60 49837244 49838794 GACTCCGGATCTTGTTTAAATCTC 60 NA Rattus norvegicus 81 Evx2 ENSRNOG00000001589 ENSRNOT00000002156 1 1 1 82 3 61580018 61580037 GGGAGAACTATGTGTCTCGG 60 61578634 61579973 GAACCACACCTTGATGGTG 59 NA Rattus norvegicus 81 Smpdl3a ENSRNOG00000000815 ENSRNOT00000001081 1 1 1 80 20 40797214 40797600 AGGAGAAGGTATACGTCATAGC 59 40797641 40797659 AGTACTGCCTCATTGCTGG 60 NA Rattus norvegicus 81 Olr583 ENSRNOG00000049657 ENSRNOT00000042996 2 1 1 60 3 75849096 75849115 CACCTCTCATTCTCTGACCT 59 75849136 75849156 GATCTAACAGCATCTTGGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxo38 ENSRNOG00000019063 ENSRNOT00000025790 2 1 1 80 18 57831771 57834678 GATGATGTTCATCCATGCTACC 59 57831712 57831731 TCAAAGCGGTTTACAATCGG 59 NA Rattus norvegicus 81 RGD1304587 ENSRNOG00000002944 ENSRNOT00000004011 2 1 1 175 10 45559722 45559740 AGAACTACCTGGGCAACTC 59 45559878 45560043 GTTCTTGTAACCAAGTGCGG 60 NA Rattus norvegicus 81 Zfpl1 ENSRNOG00000050180 ENSRNOT00000075165 2 1 1 81 1 221446118 221446247 CTCCCTCTGATCGATGAGG 59 221446055 221446075 CATTAAAGCTGGACCAGTCAG 59 NA Rattus norvegicus 81 Kpna4 ENSRNOG00000010768 ENSRNOT00000014384 3 1 1 80 2 165702746 165702853 ACAATTCAGGAGATTCTTCCAG 58 165700374 165700392 GGCCCAGACAGTATCTACC 59 NA Rattus norvegicus 81 Prr27 ENSRNOG00000023342 ENSRNOT00000036314 3 1 1 80 14 21886396 21889808 CCCTTCATTCACAAGAAATCG 58 21884950 21884971 ATTCAGAGATGGTTTAAGTGGG 58 NA Rattus norvegicus 81 Flt3 ENSRNOG00000054764 ENSRNOT00000088957 3 1 1 80 12 9398494 9399332 TCACCATAGATCTAAACCAGGC 60 9399373 9399391 ACCTTATCCACAAGGGCTC 59 NA Rattus norvegicus 81 Olr242 ENSRNOG00000050447 ENSRNOT00000044619 2 1 1 60 1 172158367 172158388 CAGTGTTTGTCATAGCTGTCTC 59 172158409 172158427 GAGCGCATCTTCAGAATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sumo1 ENSRNOG00000016133 ENSRNOT00000022047 2 1 1 80 9 66470260 66470280 ACCTTCAACTGAGGACTTAGG 59 66460514 66470218 ATCTCACTGCTGTCCTGTC 59 NA Rattus norvegicus 81 RGD1565166 ENSRNOG00000021796 ENSRNOT00000032495 1 1 1 80 10 10563479 10563884 AAACTGTTCGAAGATGGCTG 59 10563926 10563945 TGCCAGGATGTAGAGAAAGC 60 NA Rattus norvegicus 81 Psmf1 ENSRNOG00000009640 ENSRNOT00000029620 2 1 1 80 3 147252925 147252948 GACTTGACTCTGAACTTAGATGAC 59 147248553 147252892 CTCCTCACTATTTCTATAGGTCCTG 60 NA Rattus norvegicus 81 Psmf1 ENSRNOG00000009640 ENSRNOT00000029620 3 1 1 80 3 147248570 147252903 AGTGATTTCCACAGGACCT 58 147248508 147248531 CTCATGGATAGGTGTGATAATTCC 59 NA Rattus norvegicus 81 Mrgbp ENSRNOG00000045955 ENSRNOT00000073679 1 1 1 95 3 176088305 176088324 GTTCAGCCAGAATATTGGGC 59 176088382 176089244 ATCTCAGACTCGTGCAGTG 60 NA Rattus norvegicus 81 Ces2g ENSRNOG00000013808 ENSRNOT00000048385 3 1 1 80 19 37031152 37031575 GCATGAAACTTAACCTCACTG 58 37031615 37031635 CATATCTTGCAAAGTTTGCCC 59 NA Rattus norvegicus 81 Acvrl1 ENSRNOG00000028713 ENSRNOT00000008673,ENSRNOT00000081047 3 2 2 101 7 142779168 142779393 ACATCCTAGGCTTCATCGC 60 142779457 142779476 GAAAGTCATAGAGGGAGCCA 59 NA Rattus norvegicus 81 Spns1 ENSRNOG00000017621 ENSRNOT00000024185 2 1 1 80 1 197776270 197777733 CCAGACTGTGTTCATTTCCA 58 197776209 197776229 AGGTACTTTCGATTGTACCTG 58 NA Rattus norvegicus 81 Ccl2 ENSRNOG00000007159 ENSRNOT00000009448 2 1 1 81 10 69413001 69413362 AGAAGCTGTAGTATTTGTCACC 58 69413402 69413422 TCTAATGTACTTCTGGACCCA 58 NA Rattus norvegicus 81 Ccl2 ENSRNOG00000007159 ENSRNOT00000009448 3 1 1 81 10 69413002 69413363 GAAGCTGTAGTATTTGTCACCA 59 69413402 69413423 TTCTAATGTACTTCTGGACCCA 59 NA Rattus norvegicus 81 Cdk5r1 ENSRNOG00000021685 ENSRNOT00000031746 3 1 1 60 10 67863026 67863046 GTTATCAACCTCATGAGCTCC 59 67863066 67863086 GTGTGAAATAGTGTGGGTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Alpk2 ENSRNOG00000017421 ENSRNOT00000042352 1 1 1 80 18 60972815 60972835 AAGTCACTGCTGAGTTTAACC 59 60968939 60972682 TCTCTTCACATCCTCTGTATTCC 60 NA Rattus norvegicus 81 Mtmr2 ENSRNOG00000005923 ENSRNOT00000008566 2 1 1 80 8 12331043 12331063 TTGTACAGCTGTCTATTTGGG 58 12331100 12332399 CACTGTCTTCTTAGGAAGATTCTC 59 NA Rattus norvegicus 81 Ndrg2 ENSRNOG00000010389 ENSRNOT00000042055,ENSRNOT00000040540,ENSRNOT00000085897 2 3 3 80 15 28307233 28307468 CCTCATTCCTCAAGATGGC 58 28307040 28307061 AGTACTTGAAAGCTTCTGTCAG 59 NA Rattus norvegicus 81 AABR07030897.1 ENSRNOG00000059401 ENSRNOT00000077535 3 1 1 80 10 108369530 108371745 TCGCATAGAGAACAAGATTGAG 58 108371784 108371804 AGGTCGTTATCTAAGTCCCTC 59 NA Rattus norvegicus 81 Dck ENSRNOG00000003296 ENSRNOT00000004440 1 1 1 80 14 20948658 20948676 GATTGGGAAGTGGTTCCTG 58 20944977 20948616 TGTTGTCAACTCCTCAAACTC 59 NA Rattus norvegicus 81 Cd226 ENSRNOG00000038197 ENSRNOT00000058152,ENSRNOT00000091778 2 2 2 80 18 86365386 86383889 TCATAACTGATGGTGGAACC 57 86383930 86383950 TTAGGATGACAAGTAGCAGTG 58 NA Rattus norvegicus 81 Gins2 ENSRNOG00000017575 ENSRNOT00000023709 2 1 1 80 19 54163072 54163092 CTGGCCATTAACCTGAAACAG 60 54158958 54163032 CATCTGCTCCAATTTCTCCAC 59 NA Rattus norvegicus 81 Mapkapk2 ENSRNOG00000004726 ENSRNOT00000061070 2 1 1 80 13 47786706 47787181 ATGTCAAGGAGGAGATGACC 59 47786645 47786669 CGTCCTCTATCTTCTTTATCTTGAC 59 NA Rattus norvegicus 81 Olr43 ENSRNOG00000018514 ENSRNOT00000024971 3 1 1 60 1 167720306 167720324 CTTTGATCGCTTCATTGCC 58 167720347 167720366 TGAGTGAGGAAGGATTGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr555 ENSRNOG00000010052 ENSRNOT00000013328 1 1 1 60 3 75300005 75300024 GAAGTTGCCATCAAACACAG 58 75300046 75300065 CATAAGGTGGGAAGAACAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddr1 ENSRNOG00000057125 ENSRNOT00000088130 3 1 6 86 20 3559072 3559092 GCCTCCCTATAGTTTAAGCCT 59 3559140 3562542 ACAGCATCTCCAAGGTAGC 60 NA InUTR Rattus norvegicus 81 Gfpt1 ENSRNOG00000018507 ENSRNOT00000090827,ENSRNOT00000025070 3 2 2 80 4 118885377 118891769 GCCAGTACAAAGGCTTACAC 59 118891809 118891830 CATGGAGATTCTGTCATCACAC 59 NA Rattus norvegicus 81 LOC103690255 ENSRNOG00000053006 ENSRNOT00000078723 2 1 1 60 4 72293019 72293040 AGCCATCTTTACATACATGAGG 58 72293060 72293079 AACCATCTTCTCTTGTCCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxl19 ENSRNOG00000018986 ENSRNOT00000090428,ENSRNOT00000065187 1 2 2 80 1 199198674 199198695 GAGGAGAAATTTAGTTTGAGCC 58 199198736 199198885 CTTTCCCATCTTCAGGCAG 58 NA Rattus norvegicus 81 Stap1 ENSRNOG00000002014 ENSRNOT00000002760 2 1 1 80 14 23604731 23604751 ACTAAAGATCACTGCTCTACC 57 23599047 23604689 TAGTGTTCGTACTCCTGGT 57 NA Rattus norvegicus 81 Klhl42 ENSRNOG00000001844 ENSRNOT00000002523 1 1 1 83 4 181495362 181495380 CCTCTGGCTGAGTTCTCTG 60 181495427 181500777 GTTCATGTTGCGATCTCGG 59 NA Rattus norvegicus 81 Samd3 ENSRNOG00000039955 ENSRNOT00000061389 1 1 1 80 1 20155934 20155952 GTGGTCAGTTGATCAGGTC 58 20155250 20155892 ACTTCTTCCTCTTGAAACCTG 58 NA Rattus norvegicus 81 Ptprq ENSRNOG00000056915 ENSRNOT00000081885 1 1 1 80 7 50027208 50027227 AGTGGCATAGTAGTCAAGGA 58 50026054 50027167 GCTGTTCTCATTACATTCAGG 57 NA Rattus norvegicus 81 Olr437 ENSRNOG00000057924 ENSRNOT00000079349 3 1 1 60 4 72589582 72589602 ATGGGTCACAGAATTCATCCT 59 72589623 72589642 GAGGAACATTTCCATGCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Setdb1 ENSRNOG00000021143 ENSRNOT00000028709,ENSRNOT00000077325 2 2 2 80 2 196511843 196511863 GTATGAAGACATCCTCAGCCT 59 196510767 196511803 TCACAGCACCCATATTAGGAC 60 NA Rattus norvegicus 81 Naif1 ENSRNOG00000050204 ENSRNOT00000072241 3 1 1 76 3 11477621 11477639 TACCACAGAGATCCATCCC 58 11477679 11479521 GGATCTGTGTCAGGGTGAC 60 NA DesignNoJunction Rattus norvegicus 81 LOC100359587 ENSRNOG00000046646 ENSRNOT00000071887 2 1 1 94 15 32051687 32051800 TTTCTCCTGAGAGTTGCCC 59 32051858 32051876 TACTTGCATCTCAGCTGCA 59 NA Rattus norvegicus 81 Cpne1 ENSRNOG00000050864 ENSRNOT00000026657 1 1 1 80 3 151618871 151618889 TTTGCACCCATCATCAACC 59 151618249 151618828 CAGTACGAAGTATTGCGAGG 59 NA Rattus norvegicus 81 Lrrc8a ENSRNOG00000025296 ENSRNOT00000033934,ENSRNOT00000078932 2 2 2 82 3 8823059 8827556 ACAGCCAATAGGATCGAGG 59 8827602 8827620 AGAACATTGTTGCCCAGGT 60 NA Rattus norvegicus 81 Map7 ENSRNOG00000012701 ENSRNOT00000017401,ENSRNOT00000079845 3 2 2 82 1 15731790 15736439 CATTCACGGGATATCGAGCT 60 15736484 15736502 GAGACAGAGTCCTTCGGAC 59 NA Rattus norvegicus 81 LOC100910090 ENSRNOG00000046441 ENSRNOT00000071682 1 1 1 60 4 161212884 161212902 GAAAGCAGAAACACCTGGA 58 161212926 161212944 CCTTGTCCCAAAGCTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr6 ENSRNOG00000049580 ENSRNOT00000073276 2 1 1 60 20 45814312 45814330 CATCTACACCTATGCCACC 57 45814270 45814290 GATGATGGGATTGATCATGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnase2 ENSRNOG00000032133 ENSRNOT00000050820 3 1 1 67 15 28155061 28155239 GGAAACATGGGTGTGAAGC 60 28155012 28155030 ATTGAGACAAGTCCCAGCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mbp ENSRNOG00000016516 ENSRNOT00000089879 2 1 5 92 18 79352051 79372052 GGCCAGTAAGGATGGTGAG 60 79372107 79372126 ACATCACTGTCTTCTGAGGC 60 NA Rattus norvegicus 81 AABR07017635.1 ENSRNOG00000046292 ENSRNOT00000075046 1 1 1 62 15 29465761 29465779 CTTTCAGCTCCATTTGCCT 58 29465534 29465552 TTGAAGCCTGAGTTTGCAC 59 NA DesignNoJunction Rattus norvegicus 81 Pde7b ENSRNOG00000013436 ENSRNOT00000078586,ENSRNOT00000018556 2 2 2 80 1 15906114 15913137 TGCCAAAGGAAATGACACAG 59 15906053 15906074 ACTCATTCTGTCTGTTGATGTC 59 NA Rattus norvegicus 81 Car5a ENSRNOG00000019098 ENSRNOT00000025848 1 1 1 80 19 54755048 54755066 CGTCCTGCAGATACCTCTG 60 54742587 54755004 CACTGATCCCTGACTCCTC 59 NA Rattus norvegicus 81 Cog4 ENSRNOG00000017745 ENSRNOT00000023927 1 1 1 80 19 43369574 43369592 AGCAAGGCAAGTTTGACAC 59 43363261 43369533 CCACATTATTCAGAGTCACCAG 59 NA Rattus norvegicus 81 Rn60_4_1369.2 ENSRNOG00000050575 ENSRNOT00000075192 2 1 1 80 4 72089000 72089824 TAGAGACATATCTGCAGCTCC 59 72088940 72088961 GAACAATGGTTTGGTATTCAGC 59 NA Rattus norvegicus 81 Fam229b ENSRNOG00000024918 ENSRNOT00000036853 2 1 1 84 20 44219165 44219187 GAGAAAGTCCTTACGAGTTTCAC 60 44210587 44219121 TCACATAGCTTCCTGCCTG 60 NA InUTR Rattus norvegicus 81 Crhr2 ENSRNOG00000011145 ENSRNOT00000089492 3 1 3 80 4 85301256 85301274 GAATGCCTGGAGAATGGGA 60 85299280 85301213 CGGATACTCCTTGTCATCCA 59 NA Rattus norvegicus 81 Pa2g4 ENSRNOG00000004904 ENSRNOT00000006578,ENSRNOT00000081125 2 2 2 80 7 2982030 2982248 CCAATAGAAGGTATGCTGTCAC 59 2981971 2981994 GTCTGTAGGATTCTGGATAATGGT 60 NA Rattus norvegicus 81 Olr1437 ENSRNOG00000048938 ENSRNOT00000071556 3 1 1 60 10 44408041 44408062 TGAAGACACATCCCAATATGAG 58 44408083 44408101 TATCAGCACAAGGACAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0694.1 ENSRNOG00000051279 ENSRNOT00000076465 2 1 1 60 X 68470245 68470265 ATCAAACCTTACTTGCCTCTG 58 68470285 68470305 GTCTGTGGTACAAGATTCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1440 ENSRNOG00000048241 ENSRNOT00000048778 3 1 1 60 10 44972278 44972297 ACACCTTCCTCTTCACAGTC 59 44972237 44972257 GTGATGTTTCCTATGAGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam208b ENSRNOG00000018011 ENSRNOT00000048933 3 1 1 80 17 70267986 70268004 CTTTGGAGATGAGCAGCTG 59 70268045 70271278 ACTTTCAAGTCCTTTGATCCTG 59 NA Rattus norvegicus 81 Tnmd ENSRNOG00000060970 ENSRNOT00000083229 3 1 1 81 X 104684929 104685115 CACATTCTAAATGCAGAAGCTC 58 104685155 104685175 CCAGGATACCAAACACTAGTC 58 NA Rattus norvegicus 81 Fbxl8 ENSRNOG00000015242 ENSRNOT00000020440 2 1 1 80 19 37223566 37224395 TGATACAAGCATCAGTTGTGAC 59 37224435 37224454 TTGTGAATGTGGTCTAGGCA 59 NA Rattus norvegicus 81 Rftn1 ENSRNOG00000011321 ENSRNOT00000015210 3 1 1 80 9 12853687 12881365 GGAGTTCATTAAGAAGGTACAGG 59 12881405 12881423 ACAGAGGTCTGGTACTGAG 58 NA Rattus norvegicus 81 Antxr1 ENSRNOG00000008678 ENSRNOT00000011675 3 1 1 80 4 119007069 119018782 CTGCACAGTGATCATTAAGGAG 59 118998976 118998996 TTCTTTGGCAAACCATCATCG 60 NA Rattus norvegicus 81 Upf2 ENSRNOG00000023593 ENSRNOT00000058070 1 1 1 80 17 76250815 76250838 GTTCACTATACATCATCTGCACTG 60 76250518 76250780 GGCTTCTTCATCTTCTTGTTCTC 60 NA Rattus norvegicus 81 Gars ENSRNOG00000011052 ENSRNOT00000014780 2 1 1 80 4 85273686 85273707 CTCCATTCAAATGTTCTGTCCT 59 85273746 85274348 TCAGAGCTTCCGATAATTCCT 59 NA Rattus norvegicus 81 LOC100233176 ENSRNOG00000046085 ENSRNOT00000088000 3 1 2 91 6 126636275 126636293 GTTCTTCGGGACCCTAGTG 60 126622247 126622266 TCTAATACGCAGAGGTCCAG 59 NA DesignNoJunction Rattus norvegicus 81 LOC690871 ENSRNOG00000042653 ENSRNOT00000065565 1 1 1 78 10 109278974 109278992 CCTGAGTAAGGACCTGTGC 60 109279034 109280663 CATCATGGTCTTCTTGGCC 59 NA DesignNoJunction Rattus norvegicus 81 Slc30a10 ENSRNOG00000002397 ENSRNOT00000049499 2 1 1 80 13 103404500 103405654 AACATGGAGGAGCTGATGAG 60 103405696 103405715 TATCAGTTCCCAGATGTGCA 59 NA Rattus norvegicus 81 Nog ENSRNOG00000023683 ENSRNOT00000032388 1 1 1 60 10 76813032 76813050 TATCTACACATCCGCCCAG 59 76812990 76813008 GATGTTCGATGAGGTCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp236 ENSRNOG00000016303 ENSRNOT00000022086 3 1 1 80 18 79525451 79525469 CAAGGCCTGTAAGAAGGAG 58 79522747 79525409 CCTGATGCCCTAACTTTACAG 59 NA Rattus norvegicus 81 Phyh ENSRNOG00000018044 ENSRNOT00000024362 1 1 1 80 17 77297011 77298772 GATATTCAACGGTTTCGAGCA 59 77296951 77296973 GTCTTTCATTACAGTCATCCCTG 59 NA Rattus norvegicus 81 RGD1562469 ENSRNOG00000029410 ENSRNOT00000046791 3 1 1 60 13 30800018 30800037 CACTTTGTGAGGACTAACGG 59 30799977 30799998 TAAATTCGTATGGAATGGGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Capn15 ENSRNOG00000020239 ENSRNOT00000027430,ENSRNOT00000088104 3 2 2 105 10 15324317 15324335 CTCTGTCTTCAGGGACCAC 59 15324129 15324248 CAATGCACTCAGGAACCAG 59 NA Rattus norvegicus 81 Foxh1 ENSRNOG00000015371 ENSRNOT00000020696 1 1 1 80 7 117732159 117732177 CTTACTTGGCCATGATCGC 59 117731833 117732117 GGACCTGACGGATAATCTGAG 60 NA Rattus norvegicus 81 Pmf1 ENSRNOG00000019620 ENSRNOT00000035383 1 1 1 80 2 187756860 187757569 CAGACGTCTATCCGTGAGG 59 187756798 187756819 TATCTTATCCAGGGAGTTCAGG 59 NA Rattus norvegicus 81 Mug2 ENSRNOG00000033245 ENSRNOT00000072465 1 1 1 80 4 154267798 154268648 AAGTTCACTCCCAGATCCT 58 154268690 154268710 TTTCTTCCTTGCTCTATGGTC 58 NA Rattus norvegicus 81 Slc17a6 ENSRNOG00000016147 ENSRNOT00000022383 3 1 1 80 1 107035705 107036613 CAATGACGAAGAACAAGTCCC 60 107036652 107036673 ATATGACTCCACCATAGTGGAC 59 NA Rattus norvegicus 81 Ptges ENSRNOG00000006320 ENSRNOT00000045993 2 1 1 61 3 9736238 9736256 GAGTGACCCAGATGTGGAG 60 9728378 9728397 GGTAGATCGTCTCCATGTCG 60 NA DesignNoJunction Rattus norvegicus 81 Rad9b ENSRNOG00000021480 ENSRNOT00000048454 3 1 1 80 12 39714900 39714920 TCAAGAGGAAGTCACCTTCTC 59 39714959 39718312 CTGGTTAAATCCAGTGATTCCC 59 NA Rattus norvegicus 81 Pibf1 ENSRNOG00000009208 ENSRNOT00000036350 1 1 1 80 15 83552904 83592396 CAGCTCCTAGACAGGTACAG 59 83592439 83592457 CTTCAGCTTGCTCTGATGG 59 NA Rattus norvegicus 81 Pip5k1c ENSRNOG00000020577 ENSRNOT00000061159,ENSRNOT00000088364 3 2 2 81 7 11279523 11280525 TCCGGACGATTACTTGTACTC 59 11279462 11279480 GTAGAAGACGGAGCCACTG 60 NA Rattus norvegicus 81 Znhit6 ENSRNOG00000030049 ENSRNOT00000041897 3 1 1 81 2 251460046 251460064 GTGTTTACTTGAGGCTGCT 58 251460108 251469961 AACTGCTGATTCCTATGGTC 57 NA Rattus norvegicus 81 Olr712 ENSRNOG00000058008 ENSRNOT00000044992 1 1 1 60 3 78571170 78571189 GGTGTGACATATACCCACTC 58 78571129 78571151 GAAAGTCCAATGAAGTAGGTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr712 ENSRNOG00000058008 ENSRNOT00000044992 3 1 1 60 3 78571509 78571527 TCTGTCACTCATGGATGCT 58 78571467 78571487 CAAGTCTACAATCAACTTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmbim1 ENSRNOG00000014797 ENSRNOT00000084610 1 1 4 80 9 81575876 81575898 CTAGGTGTACTGCATCATTTCTG 59 81575702 81575836 CTGACTGGTTCCACAAAGG 58 NA Rattus norvegicus 81 Glcci1 ENSRNOG00000008524 ENSRNOT00000011138,ENSRNOT00000086735 1 2 2 80 4 34602699 34610181 ATGATCGTGATAAAGACAGTGG 58 34610221 34610240 ACATGTAGCTGTTGTTTGGT 58 NA Rattus norvegicus 81 Cnnm2 ENSRNOG00000020113 ENSRNOT00000054699 2 1 1 80 1 266639225 266639245 AGAAGGCATGAAGTTTGAAGC 60 266639287 266642378 AGGGACAAAGGAACTGGAG 59 NA Rattus norvegicus 81 Zfpm1 ENSRNOG00000043077 ENSRNOT00000068452 2 1 1 81 19 55118791 55121067 ACCCAGAGAAGATGTGAGC 59 55121112 55121130 CTCTTGTCCCTCCACATCC 60 NA Rattus norvegicus 81 LOC100294508 ENSRNOG00000012204 ENSRNOT00000016493 2 1 1 80 5 144850497 144850518 AAGAGAAGATCTCTGAAGACAC 57 144850558 144854193 CAACAGTCAAGCTGAAAGTG 58 NA Rattus norvegicus 81 Rn60_X_0706.1 ENSRNOG00000003035 ENSRNOT00000004052 2 1 1 60 X 69717786 69717809 CCCTGTCACAAAGATACAAATCTC 60 69717749 69717770 CACATGTTACTCAGGAACTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam120b ENSRNOG00000058790 ENSRNOT00000082790,ENSRNOT00000084017 1 2 2 87 1 57358750 57360113 GAGGACTGGAAAGACGGAG 60 57360164 57360182 CTAGGTCTGGGTGCTTCAG 60 NA Rattus norvegicus 81 Sft2d3 ENSRNOG00000016216 ENSRNOT00000021708 3 1 1 121 18 24692918 24692937 TACTCTACGCGTTGATAGGG 59 24692816 24692834 AGATTGGGACTGTCACACC 59 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 LOC100362150 ENSRNOG00000047415 ENSRNOT00000042300 3 1 1 60 4 93791079 93791097 TTCTTGGGTTCTTGTTGCT 58 93791231 93791250 GACTGGGTCATCTGAATGTC 58 NA DesignNoJunction Rattus norvegicus 81 LOC102549842 ENSRNOG00000049259 ENSRNOT00000079626,ENSRNOT00000071889 1 2 3 81 1 37957326 37957344 CCCTGCTCAATGGAATCTG 58 37956098 37957283 CTTAGAGAAAGCAAGACCCAG 59 NA Rattus norvegicus 81 LOC494224 ENSRNOG00000030258 ENSRNOT00000046005 1 1 1 62 14 21819576 21820860 TGCCAGTGATGAGTTACCT 58 21819532 21819550 TATCCACCAAATGGAGGCC 60 NA DesignNoJunction Rattus norvegicus 81 Zfp507 ENSRNOG00000013565 ENSRNOT00000092121,ENSRNOT00000018153 3 2 2 80 1 92108875 92108895 TTGTCAGTAGCTTCGAATGAG 58 92105022 92108834 TGAAGACTTGTTCCCTTCCT 59 NA Rattus norvegicus 81 Rdh7 ENSRNOG00000004391 ENSRNOT00000005875,ENSRNOT00000065232 1 2 2 80 7 71136414 71138333 AGTTGGGAACAGAGGACTC 59 71136352 71136372 TTTCTCATCCACTCATTGGGA 59 NA Rattus norvegicus 81 Ntf3 ENSRNOG00000019716 ENSRNOT00000082009 2 1 3 97 4 158637987 158673273 GCTTCCTGAAGATCTTACAGG 58 158637910 158637928 ATCCATGTTGTTGCCTTGG 59 NA Rattus norvegicus 81 Prtfdc1 ENSRNOG00000024874 ENSRNOT00000034907,ENSRNOT00000080193 1 2 2 80 17 87929060 87931283 TCAGACCTGACTATGCTGG 59 87928998 87929019 CTCGGAAGTACTCATTGTAGTC 58 NA Rattus norvegicus 81 Mir344b-1 ENSRNOG00000049100 ENSRNOT00000071684 1 1 1 60 1 121193196 121193216 CTGCTGGTTATATTCCAGGAC 58 121193156 121193175 ATTTAACAGTCGGGCTTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir344b-1 ENSRNOG00000049100 ENSRNOT00000071684 3 1 1 60 1 121193198 121193217 GCTGCTGGTTATATTCCAGG 59 121193157 121193175 TTTAACAGTCGGGCTTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ube3b ENSRNOG00000047219 ENSRNOT00000074000,ENSRNOT00000080049 1 2 2 80 12 47972914 47972932 TCCCAGAAGAAGTCCAACC 59 47971606 47972870 GTCATTGAGGCCGTAATCC 58 NA Rattus norvegicus 81 Mapkap1 ENSRNOG00000017583 ENSRNOT00000023889 1 1 1 80 3 13696776 13696797 TAAGCAGTCACGACTATAAGCA 59 13696836 13700283 TGTAGTTAACCTTGAGCACGA 60 NA Rattus norvegicus 81 Plekhj1 ENSRNOG00000019247 ENSRNOT00000026155 1 1 1 80 7 11785810 11785830 ATCACTTTGAATGCTGTAGCC 59 11785870 11785967 GTCTCATGTATTCGTAGCTGG 58 NA Rattus norvegicus 81 Dclre1c ENSRNOG00000015980 ENSRNOT00000021506 1 1 1 80 17 78807485 78810798 TGGAATGCAGTTTGAAGGT 58 78807423 78807442 AGAACTTGTACTTTGGGCTG 58 NA Rattus norvegicus 81 Slc19a2 ENSRNOG00000002839 ENSRNOT00000076186 2 1 3 60 13 82557540 82557561 GCTAAATGAGATGTTCTTTGGG 58 82559160 82559181 GTAAGAGTATGTCCACACTGGA 59 NA DesignNoJunction Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000072962 1 1 10 80 15 32796581 32852780 CTTAGGGTCCATCCAAATGTC 59 32852820 32852840 GAGGGTGATGTTATCAGACTG 58 NA Rattus norvegicus 81 Spty2d1 ENSRNOG00000050806 ENSRNOT00000075006 2 1 1 82 1 103120065 103120084 AGTGAAAGGTGTCCAGTCAG 60 103119298 103120020 TCTCTTCCAAGGCTTTCCG 60 NA Rattus norvegicus 81 LOC100909526 ENSRNOG00000048864 ENSRNOT00000043099 2 1 1 81 7 10500316 10500334 TGGATCCTTCCCAGAAGAG 58 10499962 10500274 TCCAATTTGTAGCCTATAGCAG 58 NA Rattus norvegicus 81 Uba6 ENSRNOG00000021931 ENSRNOT00000037509 2 1 1 80 14 23513089 23513109 CTTCTTAAGTGGTATGGGTGG 58 23513745 23517141 TGAATTGTCAGTGCCTTAATCC 59 NA Rattus norvegicus 81 Slc7a6os ENSRNOG00000020049 ENSRNOT00000027200 1 1 1 80 19 38182676 38182694 AAATAACTGGCGCAACGAG 59 38181534 38182635 CTGTTGTATTCATCAGAGCCTC 59 NA Rattus norvegicus 81 Hspa2 ENSRNOG00000006472 ENSRNOT00000079359 2 1 2 83 6 99434177 99434293 TCAGAGTGATGAAGGAGATCG 59 99434336 99434356 CGTTGAAATAGGCAGGAACAG 60 NA Rattus norvegicus 81 Fam205a ENSRNOG00000042596 ENSRNOT00000068752 2 1 1 99 5 58288005 58288023 TACCGAGGATTGAAGTGCG 60 58286829 58287335 AAAGTCTCCTGGCTCTTGAC 60 NA Rattus norvegicus 81 Ccdc94 ENSRNOG00000047456 ENSRNOT00000072357 3 1 1 80 9 11101074 11102711 CATTCTTGATGAGGTACCAAAGAC 60 11101017 11101035 GGTATAACCAAGCCTGCCA 60 NA Rattus norvegicus 81 Id2 ENSRNOG00000007237 ENSRNOT00000085925 1 1 2 90 6 44361989 44363881 CCGATTCATGGCGATTCAG 59 44361917 44361935 GTTCAGAATGAAGCGCGAG 60 NA InUTR Rattus norvegicus 81 Ppid ENSRNOG00000027408 ENSRNOT00000037890 1 1 1 80 2 178363958 178363976 TGTGCTGAATATTGGTGCT 57 178364020 178365757 ATTTCAAGAGCCTCCAAGC 58 NA Rattus norvegicus 81 Otub1 ENSRNOG00000021175 ENSRNOT00000028752 1 1 1 80 1 222453557 222457753 CAGAAGATCAAGGACCTCCA 59 222453496 222453514 AAACGCTCGATAGAAGCAG 58 NA Rattus norvegicus 81 Ndufa5 ENSRNOG00000005698 ENSRNOT00000008325 1 1 1 80 4 51593427 51593446 CCTAAACATGCAGCCTACAG 59 51590956 51593387 AACATCTGGTTCCAATTTGACC 60 NA Rattus norvegicus 81 Slc2a2 ENSRNOG00000011875 ENSRNOT00000015866,ENSRNOT00000091221 2 2 2 80 2 114443392 114444047 GTGTTGCTGGATAAGTTCAC 57 114444088 114444108 CCCAATCTCAAAGAAACTGAC 57 NA Rattus norvegicus 81 Slc2a2 ENSRNOG00000011875 ENSRNOT00000015866,ENSRNOT00000091221 3 2 2 80 2 114423657 114426089 CACCTCAAGAGGTAATAATATCCC 58 114426124 114426146 CATAGTTAATGGTAGCTCTTCGG 59 NA Rattus norvegicus 81 Lrch4 ENSRNOG00000001402 ENSRNOT00000001899 1 1 1 80 12 22131058 22131076 GTTATGATGGTGGCCTGGA 60 22130763 22131016 CATCTGTGGACTCATTTCCTG 59 NA Rattus norvegicus 81 LOC102552796 ENSRNOG00000027296 ENSRNOT00000027019 3 1 1 60 18 30858894 30858914 ACTCAAGCCTTACAATCTACC 58 30858933 30858954 GCAAAGAAGACACATGAAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxw2 ENSRNOG00000018687 ENSRNOT00000025399 1 1 1 80 3 13881554 13891736 ACTTCTCTGTACAGGGTCAG 59 13881493 13881511 GTCTGGATGCCGTAAACAC 59 NA Rattus norvegicus 81 LOC680160 ENSRNOG00000012657 ENSRNOT00000064760 3 1 2 203 10 87564102 87564120 TGCATTTCTAGCTGTTGCC 59 87563878 87563896 CTGACCACAGACTGGTCTC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07003433.1 ENSRNOG00000037133 ENSRNOT00000056014 2 1 1 80 1 109665970 109665992 GGAATCCTACAGAAATGATGGAG 59 109666031 109666075 CTACAACCCATTGTGGTTCC 59 NA Rattus norvegicus 81 Dnajc6 ENSRNOG00000052887 ENSRNOT00000086259,ENSRNOT00000086539 2 2 2 80 5 120454005 120454023 CCCTGCTGTTCGATTACTC 58 120454065 120455603 CACATGTAGCCTAAGTACCTC 58 NA Rattus norvegicus 81 Mbd2 ENSRNOG00000011853 ENSRNOT00000016112 1 1 1 80 18 65874891 65876150 TAAAGGTCTTCAAGGAGTCG 57 65876193 65876211 GAGCTTGTATGCAAAGCAC 58 NA Rattus norvegicus 81 Sub1 ENSRNOG00000050563 ENSRNOT00000074446 2 1 1 84 2 62029778 62029796 GAGTTCTAGAGCACTGGCA 59 62025159 62029736 GACATATCTCATCTTTCCAATCTGG 60 NA Rattus norvegicus 81 Ms4a15 ENSRNOG00000026957 ENSRNOT00000037226 3 1 1 80 1 227035367 227035387 ATCCTGGAGTTCTTCATTGCT 60 227034448 227035328 AATCACAGATGCGTTAGTTTGG 60 NA Rattus norvegicus 81 RGD1565635 ENSRNOG00000016417 ENSRNOT00000021981 1 1 1 65 18 750864 750882 ATGTGATGCAGGAAACCTG 58 751085 751105 CAAGGATACAGTCTTCTTGCT 58 NA DesignNoJunction Rattus norvegicus 81 Cpsf2 ENSRNOG00000005733 ENSRNOT00000008612,ENSRNOT00000091300 3 2 2 80 6 125892611 125892630 AAGTGTACATGCCAAAGCTG 59 125892669 125893811 GTGAGTCCTTTAATCTTACCTGG 59 NA Rattus norvegicus 81 Rrp7a ENSRNOG00000022896 ENSRNOT00000034983 2 1 1 80 7 123985601 123986376 AACGGGATTCACAAGTGGA 59 123985539 123985558 GAATGTGTCTACTTCGAGCC 59 NA Rattus norvegicus 81 Adamtsl2 ENSRNOG00000027742 ENSRNOT00000036995 2 1 1 80 3 5629922 5632539 GTGACAATCATCTTGGTTACTCC 60 5632576 5632597 ACTTCTTCCTCTCCACAATCTG 60 NA Rattus norvegicus 81 Otop2 ENSRNOG00000028121 ENSRNOT00000038935 3 1 1 84 10 103876014 103876032 TCCAGTTTCTTTGAGTGCC 58 103876077 103877616 GAAAGTAAGTCTGGACAATGAC 57 NA Rattus norvegicus 81 Tgfb1i1 ENSRNOG00000019965 ENSRNOT00000054980 3 1 1 80 1 199665803 199665821 GACTCTGTGAGCTAGACCG 59 199665860 199666030 GGAACTGAGACATGATTTCATCTG 60 NA Rattus norvegicus 81 Ttll12 ENSRNOG00000022623 ENSRNOT00000037710 3 1 1 80 7 124476830 124476852 GACGACTATGAGAAGCATTTCAC 60 124475120 124476795 GATGAACTCATTATAGTGCACCTG 60 NA Rattus norvegicus 81 LOC100361537 ENSRNOG00000026900 ENSRNOT00000034506 1 1 1 80 11 88166253 88166274 CCATCTTTCACAGATCCATCAG 59 88166627 88167122 AGTATGACTCTCCTCCTGTG 58 NA Rattus norvegicus 81 LOC100361584 ENSRNOG00000023561 ENSRNOT00000084240,ENSRNOT00000078495,ENSRNOT00000032112 1 3 3 80 4 158420161 158420181 GAAACTGCTAAAGGAGAGTGG 59 158420221 158497418 TCTTCATCATCCTCATCGTCC 60 NA Rattus norvegicus 81 Actl6b ENSRNOG00000001408 ENSRNOT00000087817,ENSRNOT00000001910 3 2 2 80 12 22201289 22201307 TGACAGAGCTGATGTTCGA 59 22199503 22201245 CATTTGCAAAGGCTGTGAG 58 NA Rattus norvegicus 81 LOC688389 ENSRNOG00000028582 ENSRNOT00000059424 1 1 1 80 2 88744819 88746115 CTTATAAGGTGTGCTTGCCA 58 88744758 88744778 GAGACTGAATTATTGGTGCCA 58 NA Rattus norvegicus 81 Rbmx2 ENSRNOG00000007371 ENSRNOT00000048922 1 1 1 83 X 135553310 135555310 GTGTTCTCACAGTATGGAGAG 58 135555353 135555373 CAGGAAACAGAATCCTTTGGA 58 NA Rattus norvegicus 81 Dcc ENSRNOG00000033099 ENSRNOT00000064947 1 1 1 80 18 66706442 66706460 CCATGACTGTCAATGGCAC 59 66680252 66706400 CTTGAGACTCGTCTAAGTCGT 59 NA Rattus norvegicus 81 Fam76b ENSRNOG00000024863 ENSRNOT00000068445 3 1 1 80 8 12364505 12364678 GTGGAAACAGAGCCATAAATCC 60 12364716 12364737 GATGGCTTAGATTCCAGTTTGG 60 NA Rattus norvegicus 81 Usp14 ENSRNOG00000014981 ENSRNOT00000020537,ENSRNOT00000084613 2 2 2 80 18 1180526 1181031 TTTGCTGATGATATTGGCTCC 59 1180466 1180486 AGAACTAGATCTTCCCTGGTG 59 NA Rattus norvegicus 81 Efna1 ENSRNOG00000020573 ENSRNOT00000027920 2 1 1 80 2 188593018 188596014 TTCAAATCCCAAGTTCCGAG 58 188592957 188592976 TAATGTGGGCAGATGATGTC 58 NA Rattus norvegicus 81 Dntt ENSRNOG00000013615 ENSRNOT00000051058 1 1 1 80 1 260317452 260320817 ATGACAAGACCAAGAGGGTG 60 260320857 260320878 GTTCAATGTAGTCCAATCCCAG 59 NA Rattus norvegicus 81 AABR07032457.1 ENSRNOG00000015806 ENSRNOT00000021161 3 1 1 82 18 66741327 66741843 GAAGAGTCTACATACAATGTCACC 59 66741884 66741902 CTCTTGGCCAGAATCTTGC 59 NA Rattus norvegicus 81 LOC102555377 ENSRNOG00000026569 ENSRNOT00000034746 2 1 1 90 1 62171412 62171431 TACCTTGACTGTGCTCAGAG 59 62171481 62172733 GACATAAGTGATGACTCTCCAC 58 NA Rattus norvegicus 81 Rtn1 ENSRNOG00000004794 ENSRNOT00000006373,ENSRNOT00000072262 3 2 2 91 6 94958727 94959207 GCTTATGGCTGTGGTTTCG 60 94958569 94958587 GAGTCCTCACAAGTCCCAG 59 NA Rattus norvegicus 81 Gadd45b ENSRNOG00000019822 ENSRNOT00000026871 1 1 1 80 7 11647417 11647860 AAACTGATGAATGTGGACCC 58 11647356 11647376 CAGAGCAATATCATCCTCCTC 58 NA Rattus norvegicus 81 AABR07066510.1 ENSRNOG00000049123 ENSRNOT00000074904 2 1 2 93 9 9931793 9932156 CAGATACAGGAAGAGGCCC 59 9931500 9931518 CATCCTCGTCCATCTGTCC 60 NA Rattus norvegicus 81 Hyal5 ENSRNOG00000039466 ENSRNOT00000060478 2 1 1 87 4 52247278 52247297 ACCCTCATAATCCACTTCCT 58 52247347 52248154 ACAAGGTCATCCTGTTCCA 59 NA Rattus norvegicus 81 Hyal5 ENSRNOG00000039466 ENSRNOT00000060478 3 1 1 87 4 52247277 52247296 GACCCTCATAATCCACTTCC 58 52247346 52248153 CAAGGTCATCCTGTTCCAG 58 NA Rattus norvegicus 81 Hgs ENSRNOG00000036696 ENSRNOT00000054966 2 1 1 81 10 109650881 109650899 CAGCTGGTAGCCTGTACTC 60 109651561 109651661 AGGTATCTTGCAAGCTCAGG 60 NA Rattus norvegicus 81 Creb3l4 ENSRNOG00000023493 ENSRNOT00000032062 1 1 1 80 2 189601109 189601289 CCATCCAGATAGATCAGTGGAG 60 189601050 189601068 TATGAGCTTCAGAGGGCAG 59 NA Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000083289 2 1 8 106 3 100789006 100815565 TTTCATCCGGGATTCCACC 60 100815635 100815653 TTTGCTTCTTTCATGGGCG 60 NA InUTR Rattus norvegicus 81 Ccdc181 ENSRNOG00000002860 ENSRNOT00000003844 1 1 1 80 13 82579611 82579631 TCTTTCACCAAGACAGAAGGA 59 82579673 82584034 TTACGCTGTTCTTCCTCCC 59 NA Rattus norvegicus 81 Cidea ENSRNOG00000018505 ENSRNOT00000024968 3 1 1 80 18 63099466 63099488 AGTTCTTTCAGACCCTAAGAGAC 60 63099527 63106744 CATACTTATTGCCCGGTGTC 59 NA Rattus norvegicus 81 Spaca5 ENSRNOG00000045622 ENSRNOT00000075264 2 1 1 80 X 913101 915246 GATTGTAATGACCTACTCAACCG 59 913043 913067 CATACTCTTATGTGAGGATACAACC 59 NA Rattus norvegicus 81 Trpv2 ENSRNOG00000003104 ENSRNOT00000004248 3 1 1 80 10 48917450 48918035 GAAATCCTCTTTCTCCTTCAGG 59 48918074 48918094 GGGTAGGTACCATTCAGTCTC 59 NA Rattus norvegicus 81 Slc39a1 ENSRNOG00000059463 ENSRNOT00000089016 3 1 1 81 2 189611019 189613359 CATGTGACGCTTCAGTTCC 59 189613404 189613422 GTGTGATCTGCTCCATCAC 58 NA Rattus norvegicus 81 LOC691153 ENSRNOG00000048187 ENSRNOT00000072274 1 1 1 61 10 85573762 85573781 GCCAGGAACATTTCAATCGT 59 85573720 85573738 GAACCCTTTCGCGTAACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp182 ENSRNOG00000047132 ENSRNOT00000073016 3 1 1 85 X 985272 985293 ATCTCATTATCAAGCTGGAGGT 59 985339 998022 AACTTGGCAGACTTCTGGA 59 NA Rattus norvegicus 81 rno-mir-6317-1 ENSRNOG00000050973 ENSRNOT00000073780 1 1 1 60 1 259080730 259080748 CTCGAGCAATTAGGTTGGG 58 259080688 259080708 CCTAGAATAACCCGATGTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zscan20 ENSRNOG00000005886 ENSRNOT00000008887 3 1 1 141 5 146769402 146769420 GTTCAGGAGTTCCAGAGGT 59 146768838 146769297 GTGTGAAGACAGCACTCTC 58 NA Rattus norvegicus 81 Sfn ENSRNOG00000033153 ENSRNOT00000043959 1 1 1 60 5 151824248 151824266 TGAAGGGTGACTACTACCG 58 151824206 151824224 ATGCGCTTCTTGTCATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif4e ENSRNOG00000052343 ENSRNOT00000090526,ENSRNOT00000089744 1 2 2 80 2 243841237 243842501 CCCTCTACAGAACAGGTGG 59 243842544 243842563 GAGATCAACCGAAGGTTTGC 60 NA Rattus norvegicus 81 Rundc3b ENSRNOG00000008463 ENSRNOT00000087657,ENSRNOT00000030224 2 2 2 80 4 22553176 22553195 AACAGCTGGTTCAACAAGTG 59 22553233 22561669 GAGTTCTTCAAGATAACCCTTCTG 59 NA Rattus norvegicus 81 Ipo5 ENSRNOG00000010989 ENSRNOT00000014859,ENSRNOT00000072538 3 2 2 80 15 106280661 106280679 GAGCTGAGACTGCTGAGAG 60 106280722 106281909 CTGCATGAACTTCTCCTTCC 59 NA Rattus norvegicus 81 AABR07003244.1 ENSRNOG00000050893 ENSRNOT00000072944 3 1 1 82 1 99941213 99941232 ACCTATTCACAGAGGGTGAC 59 99940901 99941168 ACCATGGAGATCATGCAGG 60 NA Rattus norvegicus 81 Tango6 ENSRNOG00000022524 ENSRNOT00000030768,ENSRNOT00000063977 3 2 2 80 19 38857552 38857575 GGATCAAGTCTATCAACCATTAGC 60 38857612 38860872 TTCACATCTGTACAGGACTGG 60 NA Rattus norvegicus 81 Ppp1r16a ENSRNOG00000015450 ENSRNOT00000020768 2 1 1 81 7 117754021 117754039 CCAGTTCCTTACCAGTGGG 60 117754084 117754181 GTCATCAATGCAGCACTGG 60 NA Rattus norvegicus 81 Pwwp2a ENSRNOG00000003936 ENSRNOT00000067013 3 1 1 80 10 29330391 29330409 TACAGTGTCTGACAGACCA 58 29330453 29333227 GCTAATGTCTTTGTGCTGC 58 NA Rattus norvegicus 81 MGC94199 ENSRNOG00000049287 ENSRNOT00000070963 3 1 1 84 5 23372104 23372122 TGTAGCCTGTGACTTCCAG 59 23372167 23376266 CATGTTGTTTCTGAAGAACAGG 58 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000078758 1 1 12 60 20 3359996 3360014 GTCCATCTCGTCTAGAGGG 58 3360038 3360056 GGCAGTGGAATAGTCCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017783.1 ENSRNOG00000047444 ENSRNOT00000070880 3 1 1 97 15 31032804 31032916 TTTCTCCTGAGAGTTGCCC 59 31032976 31032995 GAATAGGTGCATCTCAGCTG 59 NA Rattus norvegicus 81 Nipal4 ENSRNOG00000006255 ENSRNOT00000008544 2 1 1 89 10 31244511 31244529 GTGATGGTCATACATGCCC 58 31243973 31244460 AAATACGATGAACCCTGTGTC 59 NA Rattus norvegicus 81 Rnase17 ENSRNOG00000050295 ENSRNOT00000048941 1 1 1 60 15 28204360 28204381 CTTTCTGTAACCTCACAACTCC 59 28204321 28204345 CTTGTAGTTTGGTATCTACATTGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909831 ENSRNOG00000054293 ENSRNOT00000074870 2 1 1 60 3 73636391 73636411 CCTGATCATCCTTACAATGGT 58 73636351 73636371 TCTGAGAAAGAAGTACATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5f1 ENSRNOG00000046299 ENSRNOT00000075083,ENSRNOT00000075982 3 2 4 92 2 208571851 208573665 TGTAACAGGACCCTACGTG 59 208571777 208571796 ATGGTAGAGAAGGTCTCTGG 58 NA Rattus norvegicus 81 Hbb ENSRNOG00000058105 ENSRNOT00000090422 2 1 1 139 1 168971520 168972221 GAGAACTTCAGGCTCCTGG 60 168971399 168971418 TAGTGGTACTTGTGAGCCAG 59 NA Rattus norvegicus 81 Ces2e ENSRNOG00000011635 ENSRNOT00000015724 1 1 1 80 19 96241 96495 TACAGATGATGCTGCCTCC 59 96537 96557 GGAGAGTCTTGGAATCCTCAG 60 NA Rattus norvegicus 81 Pofut2 ENSRNOG00000001228 ENSRNOT00000001644 1 1 1 80 20 12128597 12128616 TCAGGAGAAGAATTCTGGCC 60 12127059 12128555 ATACAGAAGGTACCGTCTGC 59 NA Rattus norvegicus 81 LOC500956 ENSRNOG00000020580 ENSRNOT00000027949 2 1 1 81 8 21892888 21893036 ATATCCAGGCAGTAGCCAC 59 21893081 21893099 ATGAGGTCATCTTGGGCTC 59 NA Rattus norvegicus 81 Olr1399 ENSRNOG00000049535 ENSRNOT00000050554 2 1 1 95 10 34756772 34756790 ATCAAGTCCATGGCTGGTC 60 34756846 34772408 GTATGTGTAGATAGCTGAGCCA 60 NA Rattus norvegicus 81 Mc2r ENSRNOG00000016681 ENSRNOT00000022347 1 1 1 149 18 64168205 64177614 AGAAACTGGATCCTTCCGC 60 64168074 64168092 TTGCTGTGTTGTTGGTGTG 60 NA InUTR Rattus norvegicus 81 Mc2r ENSRNOG00000016681 ENSRNOT00000022347 2 1 1 151 18 64168205 64177614 AGAAACTGGATCCTTCCGC 60 64168072 64168090 TCTTGCTGTGTTGTTGGTG 59 NA InUTR Rattus norvegicus 81 LOC317588 ENSRNOG00000030580 ENSRNOT00000049046 2 1 1 80 X 137949395 137949519 TAGAGAACCTACCTTTCTGCC 59 137949559 137949579 CGTCTCCTTTCTTTACATCGT 58 NA Rattus norvegicus 81 Sgip1 ENSRNOG00000006357 ENSRNOT00000064567 3 1 1 80 5 122390579 122398328 AAAGACACTGATTCTACAGGC 58 122401181 122401199 TGCTTTGCTATGGTAGGGT 59 NA Rattus norvegicus 81 Gkn2 ENSRNOG00000009256 ENSRNOT00000067651 2 1 1 80 4 119175239 119175258 ATCAAGATGGACCACAAAGC 59 119175300 119175952 CATGGCATTCATTGTCTGCT 59 NA Rattus norvegicus 81 LOC100361388 ENSRNOG00000030601 ENSRNOT00000042040 1 1 1 88 3 132282780 132282798 TTGTCTGCTAAACCTGCTG 58 132282710 132282728 TTACCGACATCGACCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mgat4b ENSRNOG00000003235 ENSRNOT00000004323 2 1 1 80 10 35732974 35733253 ACATCAAAGCCTTGTTCCC 58 35733296 35733315 AGTCAGGATAGAAGTGAGGG 58 NA Rattus norvegicus 81 Hoxd12 ENSRNOG00000001587 ENSRNOT00000068636 2 1 1 115 3 61597960 61597978 CAACTTGAACATGGCAGTG 58 61598215 61598233 ATGGTTTCCTCTTCTTGCG 58 NA DesignNoJunction Rattus norvegicus 81 Plaa ENSRNOG00000007753 ENSRNOT00000010621 2 1 1 80 5 113567882 113567988 CATGATGACATTACAGGGTCAC 59 113567823 113567844 GATCCAGTTAACATTAAGCCCT 58 NA Rattus norvegicus 81 Hist1h2bk ENSRNOG00000055512 ENSRNOT00000089643 1 1 1 60 17 44527621 44527639 ATCTCTTCCAAGGCCATGG 60 44527579 44527597 CGATGCGCTCAAAGATGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tecrl ENSRNOG00000001912 ENSRNOT00000002621 3 1 1 80 14 26677041 26697186 AGTTTCACAAAGCATGTCCA 58 26700296 26700315 AATCCTTCAAGTACGGACCA 59 NA Rattus norvegicus 81 Stxbp1 ENSRNOG00000015420 ENSRNOT00000021178,ENSRNOT00000021189 2 2 2 80 3 11836444 11837398 TCCTGAAGAACGGTATCACTG 60 11836384 11836403 TGATCTCACTGTCTTCTGGG 59 NA Rattus norvegicus 81 Cks1b ENSRNOG00000042561 ENSRNOT00000055533 3 1 1 81 2 188742566 188742585 TCTGAATGGAGAAATCTCGG 57 188741940 188742523 GTAAGATGTGAGGTTCTGGT 57 NA Rattus norvegicus 81 Blzf1 ENSRNOG00000002884 ENSRNOT00000051763 2 1 2 80 13 82600393 82602389 TACAGACAGAGGTAAATCGTGAG 60 82600335 82600356 GACGTTCAAAGTGATACTGTGG 60 NA Rattus norvegicus 81 Zfp516 ENSRNOG00000016258 ENSRNOT00000088484 3 1 2 175 18 79773962 79813617 AATTAAAGGTGCTTGCTGCA 59 79813755 79813773 TCTGCTGCGATCCATTAGG 60 NA InUTR Rattus norvegicus 81 Taf2 ENSRNOG00000034022 ENSRNOT00000040836 3 1 1 80 7 94714832 94714853 GAACATGGAGTCTCCTTTATGC 59 94712317 94714791 CAGTCATGTGCAGTACCAG 58 NA Rattus norvegicus 81 Gcc2 ENSRNOG00000000823 ENSRNOT00000001092 3 1 1 80 20 27841719 27841739 CTGAACAACAGTGTCTGTGTC 60 27841775 27842939 CTTCCAGTTTAGTTACAGAATCCTC 59 NA Rattus norvegicus 81 Klhl23 ENSRNOG00000007981 ENSRNOT00000088351,ENSRNOT00000010508 2 2 2 80 3 56063603 56067503 CCACACCCAGAATATGGAC 58 56067546 56067565 CTCTGTGATCGTAGTCTGTC 57 NA Rattus norvegicus 81 AABR07069698.1 ENSRNOG00000050232 ENSRNOT00000007903 1 1 1 67 8 37704183 37704201 TGCAATATGGTACATCGCT 57 37702374 37704155 GTCAAGACTCAATAAAGAGCAC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rab2b ENSRNOG00000012488 ENSRNOT00000060467 3 1 1 80 15 28684797 28685013 CATCACAAGACGTGAAACCT 59 28684736 28684755 ATAACCATGTTGGAGCTGGA 59 NA Rattus norvegicus 81 Tctex1d1 ENSRNOG00000023100 ENSRNOT00000038410 1 1 1 83 5 122508481 122512586 AACAACGTTTCTGTCTGTACAG 59 122512630 122512648 TTCCATCCGGACTTGAAGG 59 NA Rattus norvegicus 81 AABR07002623.1 ENSRNOG00000038251 ENSRNOT00000058230 3 1 1 81 1 77782840 77784012 CGTTCTCTGACCTCCTATACC 59 77784054 77784073 TGAAATGTTGTTCCAGCTCC 59 NA Rattus norvegicus 81 Slc28a2 ENSRNOG00000028668 ENSRNOT00000024658,ENSRNOT00000036435 2 2 2 80 3 114362115 114362930 GTGTTTAGCGTATGCTGCC 60 114362973 114362992 CAGGTGATGACAAACAAGGC 60 NA Rattus norvegicus 81 Klhl2 ENSRNOG00000029441 ENSRNOT00000047223 2 1 1 80 16 26838128 26838147 ATGCTACGACTTCAAAGAGG 58 26838190 26840088 ATATACACCATCCCTGCCC 59 NA Rattus norvegicus 81 Smoc2 ENSRNOG00000014166 ENSRNOT00000019317,ENSRNOT00000079718 2 2 2 80 1 56339167 56345996 CTCCACAAGGTATGAGCAG 58 56346040 56346058 CTGTTCTTGTACAGGTCCC 58 NA Rattus norvegicus 81 Ndnf ENSRNOG00000006857 ENSRNOT00000009094 1 1 1 60 4 96563789 96563808 GTTTCTACGGTTTGCTCCAG 59 96563828 96563849 ACAAGAGTGAATAAAGAGGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Svip ENSRNOG00000037137 ENSRNOT00000056024 2 1 1 100 1 107371453 107371471 GGATATCCAGTCGGTGGAG 59 107368950 107371390 ACACTGTCCATCTAAGTCCC 59 NA Rattus norvegicus 81 Lrwd1 ENSRNOG00000001429 ENSRNOT00000001940 1 1 1 80 12 23586852 23586872 GGATCTACGATGTTGAACACC 59 23586913 23587026 ACTTCAGGATCTGTGTTGGG 60 NA Rattus norvegicus 81 Olr837 ENSRNOG00000033505 ENSRNOT00000041134 3 1 1 60 5 59278993 59279012 CTCTCCTTCCTGGACATCTG 59 59278952 59278970 GGAAGCTGTCCAGAATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_2279.2 ENSRNOG00000051203 ENSRNOT00000076296,ENSRNOT00000076549 1 2 2 83 2 208556341 208556359 TCCTCATCAAGAGCTGCAG 60 208555763 208556046 TAGATGACAGCTTGGTGGG 59 NA Rattus norvegicus 81 Ccdc178 ENSRNOG00000022156 ENSRNOT00000050933 1 1 1 80 18 13018770 13020372 ACTTGTAAAGTTGCAGGAAGAG 59 13018711 13018731 CTTAAGATGTGGTCGAACACG 59 NA Rattus norvegicus 81 Ccdc178 ENSRNOG00000022156 ENSRNOT00000050933 2 1 1 80 18 13018770 13020371 CTTGTAAAGTTGCAGGAAGAG 57 13018710 13018730 TCTTAAGATGTGGTCGAACAC 58 NA Rattus norvegicus 81 Cps1 ENSRNOG00000013704 ENSRNOT00000019023,ENSRNOT00000076059 1 2 2 80 9 74234375 74235276 ACCAATTTCCAGGTGACCA 59 74235318 74235338 GTAGTGGAACAGACTCTTGGA 59 NA Rattus norvegicus 81 Fuom ENSRNOG00000018476 ENSRNOT00000024976 1 1 1 86 1 212566583 212566601 CCAGTGACAAGGAGAAGGG 60 212565353 212566535 TCAGGGCTTTCTTACAGTCAG 60 NA Rattus norvegicus 81 Rasgef1a ENSRNOG00000031671 ENSRNOT00000051804 3 1 1 80 4 150139323 150139420 CATGATGGCCATCATATCTGG 59 150139462 150139480 TTGGCTGTCTTGACTTTGG 58 NA Rattus norvegicus 81 AABR07002938.1 ENSRNOG00000037415 ENSRNOT00000056615 1 1 1 86 1 89871245 89871269 CTTGACTTGGAGACTATAAGAAGAC 59 89871180 89871205 CCTTCTCTTGAGATGTTCATCTC 59 NA Rattus norvegicus 81 Zp3 ENSRNOG00000001434 ENSRNOT00000001952 3 1 1 80 12 23736278 23736424 ACTTCCCAGAGTTGGTCAC 59 23736216 23736237 GCTTGAATTACTACAGTTGCCA 59 NA Rattus norvegicus 81 Galnt2 ENSRNOG00000019143 ENSRNOT00000080860,ENSRNOT00000065431 2 2 2 80 19 57101887 57101907 AAGCTCTATTTCGAAGAGCTG 58 57101949 57103648 TCGGAATGAGATCTCCAGG 58 NA Rattus norvegicus 81 Rpl39 ENSRNOG00000032835 ENSRNOT00000040815 3 1 1 60 18 6587041 6587060 CAGAATCAAGCGATTCCTGG 59 6587000 6587020 AATCCATTGAGGAATAGGACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc14a2 ENSRNOG00000056021 ENSRNOT00000078519 3 1 1 80 18 74520073 74520766 GAGGGACTTAAAGACAAATCTCC 59 74520015 74520036 GTTCACAAACATCACCTGAGAC 60 NA Rattus norvegicus 81 Mbnl2 ENSRNOG00000010737 ENSRNOT00000014300 1 1 1 80 15 105756860 105756878 ACCATGATCGACACAAACG 59 105756921 105756941 TTTGCATTTCTCCCTCATGC 59 NA Rattus norvegicus 81 Zfp426 ENSRNOG00000033624 ENSRNOT00000077465 2 1 2 80 8 21489303 21489321 ACCCAGATCAGAGAACCCT 60 21481708 21489263 TGATGAGCTGATATCCTACTGTG 60 NA Rattus norvegicus 81 RGD1563812 ENSRNOG00000031864 ENSRNOT00000042547 1 1 1 60 13 96196202 96196220 CACCTTCACCATTACAGGC 59 96196243 96196262 GATGCTGGGAAGCATTTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC136661.1 ENSRNOG00000037380 ENSRNOT00000047772 1 1 1 80 1 91746970 91746988 CTGGACAACTTTGCCAAGG 59 91747030 91747054 ACACAGTCTCTTTCCAGAAGG 60 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000082680,ENSRNOT00000084685,ENSRNOT00000077517,ENSRNOT00000014073 3 4 8 86 6 128078983 128079003 GGCATCAAAGAAGTCTTCTCC 59 128079051 128079994 CTTGTGGACCACCTGAGAG 60 NA Rattus norvegicus 81 Il27 ENSRNOG00000019170 ENSRNOT00000025950 2 1 1 142 1 198007001 198007019 TGAGGTTCAGGGCTATGTC 59 198005732 198006812 AGAGTCTGTCAGAGTCAGAG 58 NA Rattus norvegicus 81 Efs ENSRNOG00000042029 ENSRNOT00000022514 2 1 1 80 15 33583626 33583645 TTCCGACTCCATCTACAAGG 59 33583473 33583584 ACATCATAGACCTCTCCCAC 58 NA Rattus norvegicus 81 Gltscr2 ENSRNOG00000013023 ENSRNOT00000017555 2 1 1 80 1 77841294 77841312 AAAGCATCTCCAGAAACCC 58 77840804 77841250 GCAAGGATGTCTTTGGGAG 59 NA Rattus norvegicus 81 S100a13 ENSRNOG00000012393 ENSRNOT00000016519 3 1 1 80 2 189907096 189912287 CCTCATTTGCTCAAGGATGTG 60 189912328 189912347 GAACTTCAGCTCCGAATCCT 60 NA Rattus norvegicus 81 Ajuba ENSRNOG00000012791 ENSRNOT00000017753 3 1 1 80 15 33211105 33212428 GATTCTAGAGAAGATCCTCCAG 57 33211046 33211064 AGGCACTTGTTACAAACGA 58 NA Rattus norvegicus 81 Rn60_2_2280.3 ENSRNOG00000049591 ENSRNOT00000074779 3 1 1 60 2 208514334 208514352 GAGATGATGACGTTCCCGA 59 208514292 208514312 TTCCTTTAAAGTCCCGAACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360333 ENSRNOG00000042026 ENSRNOT00000067020 1 1 1 60 17 5311854 5311873 CAAAGGAAGAAGTGGCTAGG 58 5311894 5311914 TGTAGATGAGAAGAACATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nav3 ENSRNOG00000052157 ENSRNOT00000082100 1 1 1 80 7 52318387 52335395 GCTATCTGGTGAAGACCCT 59 52318325 52318343 GTCTCTTCCAAGTTCTGCC 58 NA Rattus norvegicus 81 Cux1 ENSRNOG00000001424 ENSRNOT00000059486 1 1 1 80 12 23327663 23347171 TAATTGATGTTCCAGATCCCGT 60 23347212 23347230 CAATGTCGTGTAGACGCTG 59 NA Rattus norvegicus 81 AABR07049136.1 ENSRNOG00000058501 ENSRNOT00000051752 2 1 1 60 5 107505352 107505373 CCTCATACTCATAACCTCAGGA 59 107505313 107505331 GTCTCCTCATTTGTGCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC688452 ENSRNOG00000039076 ENSRNOT00000014598 3 1 1 88 1 59705213 59705231 GAGGACTCCAAGATACGCA 59 59705278 59706077 CTCCTCTCATCATAGTTGATTTCC 59 NA Rattus norvegicus 81 Sugt1 ENSRNOG00000012594 ENSRNOT00000017086,ENSRNOT00000042606 1 2 2 80 15 61910252 61913777 AGTCATTTATGGAGTCTGGTG 58 61913817 61913837 GAGGGTTGATTTCAACTTTCC 58 NA Rattus norvegicus 81 Upk3b ENSRNOG00000023686 ENSRNOT00000037639 1 1 1 80 12 23681966 23682141 CTGAGTCTAGACCTGATTCCC 59 23681906 23681924 AGAGAACGTAGTGGCTGTG 60 NA Rattus norvegicus 81 Celf3 ENSRNOG00000020875 ENSRNOT00000028324 3 1 1 80 2 195725578 195725990 CGAGAGTCGAGGAGAAGAC 59 195726033 195726052 AACATCTTCCGGACATCCTC 60 NA Rattus norvegicus 81 Hfe2 ENSRNOG00000021200 ENSRNOT00000028781 1 1 1 80 2 198657482 198657500 AACGACTTCCTCTTTGTCC 57 198657543 198658074 GATAGTGATCTTCCGGATGG 57 NA Rattus norvegicus 81 AABR07035818.1 ENSRNOG00000059116 ENSRNOT00000044841 3 1 1 101 12 23467895 23469013 TCTGGTCTTTCTGGTGCTG 60 23469254 23469273 AATTTGTGCAGATGATCGGC 60 NA Rattus norvegicus 81 Ssfa2 ENSRNOG00000005865 ENSRNOT00000008046 1 1 1 80 3 66618317 66618335 GATGATGGACTTGGAGCTG 58 66618378 66618750 ACTTCATACCTGTCCTCCTC 58 NA Rattus norvegicus 81 LOC686411 ENSRNOG00000049738 ENSRNOT00000072579 3 1 1 97 1 225628505 225631413 GCTATGAAACTAATGCTGGCA 59 225628428 225628447 CTCAAGTTCCTTCCTCAGGT 59 NA Rattus norvegicus 81 Zfp532 ENSRNOG00000017116 ENSRNOT00000082403,ENSRNOT00000064250 1 2 2 80 18 61323857 61328532 AGAGTTGGCTTTCGATGTG 58 61328575 61328594 GTGAGAGCCTTGAATGTGAG 59 NA Rattus norvegicus 81 LOC364343 ENSRNOG00000046466 ENSRNOT00000071822 2 1 1 91 15 29993490 29993603 TTTCTTCTGAGAGTTGCCCA 59 29993418 29993436 TTGCATTTCAGCTGCAGAG 59 NA Rattus norvegicus 81 LOC498555 ENSRNOG00000038074 ENSRNOT00000057931 1 1 1 60 15 75067625 75067647 AGATGAGAAGAAAGAGGAGTCTG 59 75067667 75067685 ATCAAACAGGCCAAATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir181b1 ENSRNOG00000035590 ENSRNOT00000053713 1 1 1 60 13 54952936 54952955 TCAACATTCATTGCTGTCGG 59 54952977 54952996 GCATTCATTGTTCAGTGAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B9d1 ENSRNOG00000047790 ENSRNOT00000075073,ENSRNOT00000084944 3 2 2 89 10 47787643 47787661 CAAGATGTACGGCAAGCAC 60 47787713 47789126 GAGTACAATTTGTGGCCAGC 60 NA Rattus norvegicus 81 RGD1559459 ENSRNOG00000042714 ENSRNOT00000065079 2 1 1 80 14 22938137 22939660 AGTATTAGGAAGACCCACTACAC 59 22939700 22939718 TCCAAATCCCAGTAGGTCC 58 NA Rattus norvegicus 81 Rnase13 ENSRNOG00000039500 ENSRNOT00000060539 2 1 1 60 15 28323206 28323226 GAACTACAACGAGTACTGCAC 59 28323166 28323185 CAGGGTACAGACAGTGATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-S3 ENSRNOG00000000777 ENSRNOT00000082116 1 1 2 92 20 3178451 3178626 CATGTTCTAGGCAGCAAGG 59 3179225 3179244 TGCCCAGTCATTCAAATGTC 59 NA InUTR Rattus norvegicus 81 RT1-S3 ENSRNOG00000000777 ENSRNOT00000082116 2 1 2 93 20 3178451 3178626 CATGTTCTAGGCAGCAAGG 59 3179225 3179245 ATGCCCAGTCATTCAAATGTC 59 NA InUTR Rattus norvegicus 81 Gata2 ENSRNOG00000012347 ENSRNOT00000017240 2 1 1 80 4 120140186 120140672 AAGCTGCACAATGTTAACAGG 60 120140713 120140732 GGATTTGCTGGACATCTTCC 59 NA Rattus norvegicus 81 Cfdp1 ENSRNOG00000019326 ENSRNOT00000089873,ENSRNOT00000026249 3 2 2 80 19 44064405 44065801 AAGTTAAGGTAGCAGAGGAGAC 59 44064346 44064370 CTTTAGGTTTCTCTAGTTCATCTGC 60 NA Rattus norvegicus 81 Mc4r ENSRNOG00000018692 ENSRNOT00000025223 1 1 1 60 18 62613548 62613569 TGATTGGAGTGTTTGTTGTCTG 60 62613509 62613532 GAGATGTAGAACAGTAAATGGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Parvb ENSRNOG00000055305 ENSRNOT00000080152,ENSRNOT00000082805 1 2 2 80 7 125230555 125230573 AAGAGCGCCATCAATTCTC 58 125230615 125232681 CTCCTCATTCTCCTCTAGCTG 59 NA Rattus norvegicus 81 Fam110a ENSRNOG00000050946 ENSRNOT00000077580 2 1 3 221 3 147487142 147487160 TCACTTCCCTTTCCTCTGG 59 147478073 147478091 ATACAGGCACAAAGTTGGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100359766 ENSRNOG00000049553 ENSRNOT00000074483 2 1 1 91 15 29623448 29623561 TTTCTCATGAGAGTTGCCCA 59 29623376 29623394 TTGCATTTCAGCTGCAGAG 59 NA Rattus norvegicus 81 Nup43 ENSRNOG00000049505 ENSRNOT00000080138,ENSRNOT00000073528 1 2 2 80 1 1776471 1777798 GTCAGATATTATCACTGACTGGG 58 1777838 1777856 TAGCTACAACATGCTGCTG 58 NA Rattus norvegicus 81 Pih1d2 ENSRNOG00000009965 ENSRNOT00000013242 1 1 1 81 8 55052879 55052897 CAATCAGCCACTCATCCTG 58 55052940 55054195 CAATGATGGTACAAGCATCTG 58 NA Rattus norvegicus 81 St5 ENSRNOG00000013934 ENSRNOT00000064902 3 1 1 80 1 174151689 174152302 CAGAATACAGCAGTGAAACCT 58 174151629 174151647 GTAAGCGCCTACAATAGCC 59 NA Rattus norvegicus 81 Rpl12 ENSRNOG00000016220 ENSRNOT00000021725 3 1 1 80 3 12009690 12009954 GAGATCAAAGTCGTGTACTTGAG 59 12009994 12010012 CAGAGGACCGATCTTAGGG 59 NA Rattus norvegicus 81 Cenpc ENSRNOG00000021776 ENSRNOT00000031074 1 1 1 80 14 23654488 23662231 CACAAATTAGTATTGCCCTCCA 59 23662272 23662290 TCGCCAATATTCCAGAGGT 59 NA Rattus norvegicus 81 Cenpc ENSRNOG00000021776 ENSRNOT00000031074 3 1 1 80 14 23632316 23632334 CTTCAAGGAGGAAGGAAGC 58 23632377 23635055 CTTCATTAGCCTGAACTGGT 58 NA Rattus norvegicus 81 Scube1 ENSRNOG00000010617 ENSRNOT00000017727 2 1 1 80 7 124504036 124504477 CTATGACGAGGACTACCAGC 60 124503975 124503993 ATCTCCTGATGGTTCTCCG 59 NA Rattus norvegicus 81 Slc25a17 ENSRNOG00000018920 ENSRNOT00000025758 2 1 1 88 7 122547366 122548922 GCATCATCGATGCATTCCA 59 122547296 122547314 GAAGACCAACAGCAAGGAG 59 NA Rattus norvegicus 81 Tulp3 ENSRNOG00000005767 ENSRNOT00000007634,ENSRNOT00000067895 3 2 2 81 4 161652971 161653514 GTCATCCTACATGGCATCGA 60 161652909 161652927 AGAGAACTTGAGGCTTGCT 59 NA Rattus norvegicus 81 Gpr119 ENSRNOG00000024517 ENSRNOT00000033619 1 1 1 80 X 135519533 135519551 CTGATGGCAGTACACAACC 59 135516844 135519490 TGTACAGCGTCTTTCTTCCT 59 NA Rattus norvegicus 81 AC139873.4 ENSRNOG00000061643 ENSRNOT00000091724 2 1 1 60 3 73896480 73896499 GTGGTCCTTGTTTCTTACCT 58 73896439 73896460 CTTCAGCAGAATTCATTCTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgap35 ENSRNOG00000015852 ENSRNOT00000090519,ENSRNOT00000021223 3 2 2 80 1 78460733 78470359 AGCTCACAAGATCAACGAC 58 78460671 78460689 TCATGGTTCTCCTTAGGGA 57 NA Rattus norvegicus 81 Mllt11 ENSRNOG00000021110 ENSRNOT00000028664 3 1 1 85 2 196394261 196402084 TTGCTAACAGGGAATCATGC 59 196394195 196394213 GATCCAGTTCTGGGATGGG 60 NA InUTR Rattus norvegicus 81 RT1-T24-1 ENSRNOG00000032596 ENSRNOT00000041502 2 1 1 104 20 3281459 3281787 CTTTACCCGAACTGACCCT 59 3281855 3281873 ATGTCAGCAGGGTAGAAGC 60 NA Rattus norvegicus 81 Cngb1 ENSRNOG00000031773 ENSRNOT00000060351,ENSRNOT00000088645 3 2 3 80 19 10149366 10149668 CCCTAGCCTTCAAGAGACC 59 10149711 10149730 CTGTTCACCTTGACAACAGC 60 NA Rattus norvegicus 81 AABR07052798.1 ENSRNOG00000046348 ENSRNOT00000071912 2 1 1 60 3 75769010 75769031 CTGCATCTTTACCGATGTTGAG 60 75769051 75769070 CTTGTACCGATCAAATGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chtf8 ENSRNOG00000047246 ENSRNOT00000070822 2 1 1 98 19 39080435 39080852 TACACCACTGAGGGAATCC 58 39080355 39080373 GTGTTTGACAAGGACTGCA 59 NA Rattus norvegicus 81 LOC100362830 ENSRNOG00000027694 ENSRNOT00000011545 1 1 1 60 5 169021892 169021911 GGCTAGTTCGTGAATTGGAG 59 169021851 169021871 CTCTGAGCAATGAAGACTACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sema6d ENSRNOG00000004812 ENSRNOT00000090802,ENSRNOT00000066101 3 2 2 80 3 116948833 116949850 CTTATAACCCAGCCAAGTGC 59 116949893 116949911 CATGGTGATCCCTGTCCAG 60 NA Rattus norvegicus 81 Nlrp4a ENSRNOG00000042030 ENSRNOT00000043739 3 1 1 80 1 69369785 69377885 GTCCTCAAGTCACTATGTTTGAG 59 69369727 69369748 GTTGTTCCTTAAGACTTCAGCC 60 NA Rattus norvegicus 81 Rtkn2 ENSRNOG00000000636 ENSRNOT00000068778,ENSRNOT00000086250 2 2 2 80 20 21978230 21981497 CACCATATTCAACGAAGCAGG 60 21978170 21978190 GTTATGGAAGATTCCTCTGCG 59 NA Rattus norvegicus 81 Pom121 ENSRNOG00000001449 ENSRNOT00000001968 1 1 1 80 12 24334268 24334287 GAAGACCTGGACATGGAGAG 60 24334330 24334804 GGTAGAGGCATCATCCGTC 60 NA Rattus norvegicus 81 Rbm28 ENSRNOG00000005468 ENSRNOT00000077079,ENSRNOT00000064007 1 2 2 80 4 56437994 56438012 CAGTGATCAGCTGGAAGAG 58 56434575 56437952 GCTTTACTCCCTTTCTCTGTC 59 NA Rattus norvegicus 81 Sprtn ENSRNOG00000021330 ENSRNOT00000038257 1 1 2 89 19 57651011 57651029 TATGAAGGGAGAGGAGGCA 59 57651080 57653039 GTGGTAGACCTCTACAAGGTC 59 NA Rattus norvegicus 81 Atg14 ENSRNOG00000011873 ENSRNOT00000016274 3 1 1 82 15 24348166 24349310 AAAGCTGTGCAACAGTGAG 59 24348102 24348120 TGTTTGCGTTCAGTTTCCT 58 NA Rattus norvegicus 81 Cckbr ENSRNOG00000017679 ENSRNOT00000024077,ENSRNOT00000085395 3 2 2 80 1 170262335 170262353 TTCTCAACAGCAGTAGTGC 58 170262396 170269734 CCATCTCCAATTCTCTGGTC 58 NA Rattus norvegicus 81 Znf740 ENSRNOG00000012192 ENSRNOT00000016240 1 1 1 80 7 143814023 143814348 GTGTTCCAGTCAGATGGAC 58 143814391 143814410 TTGCGGGATTTATCACTGTC 58 NA Rattus norvegicus 81 Ccdc74a ENSRNOG00000001876 ENSRNOT00000002567 2 1 1 80 11 87552593 87552612 CTCAAGTCACTCCTGGAAGG 60 87552655 87552747 GTCCTGGTCCTTTGGAGAG 59 NA Rattus norvegicus 81 Thrap3 ENSRNOG00000009977 ENSRNOT00000013570 1 1 1 80 5 144181673 144185186 GATCAAAGAAGCAGAAGAAGCA 59 144181614 144181632 AGGAGTGAGATGACTGGGA 59 NA Rattus norvegicus 81 Tph2 ENSRNOG00000003880 ENSRNOT00000005157 1 1 1 80 7 58058282 58058300 CCTTTGCAAGCAAGAAGGT 59 58043709 58058241 GAAAGAGCATGCTTCAATTCTC 58 NA Rattus norvegicus 81 Kcnmb3 ENSRNOG00000027836 ENSRNOT00000058860 3 1 1 169 2 118874813 118874832 GCATAAGCAATGGAGATCCC 59 118870404 118874681 TTCTTCTCTGGGAGAGCTG 58 NA Rattus norvegicus 81 Adamtsl5 ENSRNOG00000033787 ENSRNOT00000060811 2 1 1 174 7 12229457 12230185 CTCTGAGCAACTGACCCTC 60 12231617 12231636 AGTGATCAGCAGAATCGGAG 60 NA InUTR Rattus norvegicus 81 Fbxl22 ENSRNOG00000017684 ENSRNOT00000023810 1 1 1 87 8 72204346 72204364 TGATTTCCTCCTGCAGGTG 60 72202049 72202067 TAAGCAGTCATCCGTGACG 60 NA DesignNoJunction Rattus norvegicus 81 Stx1a ENSRNOG00000029165 ENSRNOT00000049601 1 1 1 80 12 24696686 24696972 GAGTTCTTTGAACAGGTGGA 58 24696625 24696643 GTGTTTCCTCTTCACCTCC 58 NA Rattus norvegicus 81 Bcl11b ENSRNOG00000005776 ENSRNOT00000084057,ENSRNOT00000007602 3 2 3 139 6 131888523 131888541 GATTACTTCACCTCTGCGT 57 131838879 131888421 CATCTTTACACTGGCATCCA 58 NA Rattus norvegicus 81 RGD1561212 ENSRNOG00000024283 ENSRNOT00000043949 1 1 1 81 5 120877526 120878423 AAAGAGTTGTCCAGATGCC 58 120877463 120877484 GTTTCAAGTCTGACATTGAGAG 57 NA Rattus norvegicus 81 Pnmt ENSRNOG00000046057 ENSRNOT00000073486 2 1 1 82 10 86341865 86341993 CATCGAGGACAAGGGAGAG 59 86342039 86342057 GCACATCAATGGGCAAGAC 60 NA Rattus norvegicus 81 LOC100125367 ENSRNOG00000005558 ENSRNOT00000007341 1 1 1 105 13 111891038 111891502 GAACGCATGGGATCTTTCTC 59 111891565 111891588 CATGAGATCTGGAAGTTACATGAC 59 NA InUTR Rattus norvegicus 81 Gjb3 ENSRNOG00000014372 ENSRNOT00000019266 3 1 1 60 5 145391488 145391506 CTGCTACCTCATCTTCCAC 57 145391446 145391464 GCTCTTCGTCGATTTGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhl10 ENSRNOG00000016749 ENSRNOT00000022687 1 1 1 80 10 88372295 88372484 CATGTATACGCAGTAGGTGG 58 88372526 88372545 CCAAGTATTAGCCACTGGAC 58 NA Rattus norvegicus 81 Mlph ENSRNOG00000019763 ENSRNOT00000080449 3 1 1 89 9 98092557 98092576 TCTGATGAAGACAGCATCCC 60 98092627 98094937 CTCCGAGATCTGAGTCTCAG 59 NA Rattus norvegicus 81 Ero1lb ENSRNOG00000002609 ENSRNOT00000085669,ENSRNOT00000003526 3 2 2 80 17 90737505 90737524 CAACACCAAAGAACTGGACG 60 90735506 90737465 TCTTTGCTTTCGTTACTTAGGG 59 NA Rattus norvegicus 81 Flywch2 ENSRNOG00000004461 ENSRNOT00000005899 1 1 1 84 10 13112390 13114875 GAACCTGGATACAGGTGGAC 60 13112325 13112343 CTTAGGGAGTGCAGTGGTC 60 NA Rattus norvegicus 81 Lix1 ENSRNOG00000012988 ENSRNOT00000017442 3 1 1 80 1 59209706 59209726 CAACTACTTCACTGGAATGGA 58 59209763 59212371 GGAATAATAGGAGATGACTTCCTG 58 NA Rattus norvegicus 81 Uqcr10 ENSRNOG00000009521 ENSRNOT00000012614 2 1 1 60 15 86123327 86123345 ATGATCACAGCAAGGAGGG 60 86123285 86123304 TCCTGGTTCTCGTACTTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015525.1 ENSRNOG00000056900 ENSRNOT00000087833 3 1 1 60 14 61750560 61750579 TGTCTGTGTTCTGAAACAGC 59 61750600 61750620 GTATCCAGCATACAAACCAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atg4c ENSRNOG00000008767 ENSRNOT00000011631 2 1 1 80 5 117905101 117905122 TAAGCCTTGAGTATTGTGTTGG 59 117905160 117905832 AACTGTCATCTTGAAATCCAGC 59 NA Rattus norvegicus 81 LOC684841 ENSRNOG00000049198 ENSRNOT00000074024 2 1 1 82 17 43791889 43791907 ACTTCAAGACCGACCTTCG 60 43791952 43791971 AAACAGACCCACAAGGTAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dach1 ENSRNOG00000008834 ENSRNOT00000011926 3 1 1 80 15 82138920 82139392 CTCCGGGTCTTAAATGACTC 58 82138859 82138879 TATTGTCCTTTCAGCATCTGC 59 NA Rattus norvegicus 81 Stk36 ENSRNOG00000016913 ENSRNOT00000022839 2 1 1 80 9 81885697 81885716 TCTTTCAACTGGTTAGCCTC 58 81885758 81887212 GCAAGAAGTTCTTGAAGCAG 58 NA Rattus norvegicus 81 Apobec1 ENSRNOG00000015411 ENSRNOT00000020735 1 1 1 80 4 155390059 155398192 CACTCTGAGGAGAAGAATTGAG 58 155390000 155390018 AGCAGACAGGTCTCTTTCC 59 NA Rattus norvegicus 81 Npepl1 ENSRNOG00000028384 ENSRNOT00000034915 2 1 1 80 3 172198814 172199215 CATCTTCCTTGAGGAGATTAGC 58 172199254 172199274 GTCTTTAGCTGTTCATCACGG 59 NA Rattus norvegicus 81 Olr349 ENSRNOG00000057094 ENSRNOT00000080145 1 1 1 60 1 229927614 229927633 TTGTAGCCTTTGCTAGTGTG 58 229927573 229927591 GCATAGCGATCATAGGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ldlrad2 ENSRNOG00000033503 ENSRNOT00000055947 2 1 1 153 5 155914958 155915960 AAGTGTTGGAAGGTCCCTG 60 155914823 155914841 TTACAAGCTGCACAACACC 59 NA Rattus norvegicus 81 AABR07059478.1 ENSRNOG00000047774 ENSRNOT00000075169 3 1 1 90 4 21051554 21051772 TGTATAATAAGGGCATGGCCA 59 21051484 21051503 TCATTACCACCACTGACCAG 60 NA Rattus norvegicus 81 LOC102548369 ENSRNOG00000031960 ENSRNOT00000041344 3 1 1 60 15 100303732 100303751 CTTCGGATGCAAGAAGACAG 59 100303691 100303709 GATGAGCCCATTTCCTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Brms1 ENSRNOG00000020117 ENSRNOT00000027258 3 1 1 81 1 220330336 220330354 GGAGGCAGATGAGAGTGAG 59 220330398 220330522 GTCCTCGTCATCCATCTCTG 60 NA Rattus norvegicus 81 Pnisr ENSRNOG00000008782 ENSRNOT00000061139 1 1 1 80 5 35997773 36000094 CAAGATCCAAGCCAGATTGAC 59 36000136 36000154 GATGCTTTGCTGTCCTGAG 59 NA Rattus norvegicus 81 Ak4 ENSRNOG00000045738 ENSRNOT00000070967 3 1 1 80 5 120281490 120301649 CTGGCTATTAGATGGATTCCC 58 120301688 120301709 CTGATTACTAGGTCCACATCAC 58 NA Rattus norvegicus 81 Usp11 ENSRNOG00000009049 ENSRNOT00000051956 3 1 1 80 X 1689275 1689581 GAACCCTTGGTATTGCTCCT 60 1689214 1689234 AGAACTTCAGGTAGCATCCAG 60 NA Rattus norvegicus 81 Tmem241 ENSRNOG00000023412 ENSRNOT00000029274 1 1 1 80 18 3527496 3527514 GAAGTTCTCACCTGTGGGT 59 3510281 3521516 GAGGAAGAGGGCACTACAG 59 NA Rattus norvegicus 81 Rnf40 ENSRNOG00000018840 ENSRNOT00000025499 1 1 1 80 1 199040379 199040400 AACTCTGGCTACTATGTGTCTG 60 199040439 199041221 CATCTCAAACTTCTGCATGCT 59 NA Rattus norvegicus 81 Chpt1 ENSRNOG00000058271 ENSRNOT00000080939 3 1 1 80 7 29056744 29056762 AGCCAGAAGGACAAATTCC 58 29055791 29056703 GCCATAAATACTGTGGAAAGAG 57 NA Rattus norvegicus 81 Impdh1 ENSRNOG00000020032 ENSRNOT00000027173 1 1 1 80 4 56484911 56484929 AAGACACCACTGATCTCGT 58 56484730 56484867 AATTCCTCCCATGAGAGCC 59 NA Rattus norvegicus 81 LOC100911637 ENSRNOG00000048471 ENSRNOT00000070854 3 1 1 60 3 149741858 149741878 AAGAAGGAAGAGGAAGACGAC 60 149741899 149741918 CTTCCTCTTCCTCCTCTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Icam1 ENSRNOG00000020679 ENSRNOT00000028066 3 1 1 81 8 22043760 22044434 GGACTTTCGATCTTCCGAC 58 22044479 22044497 CACAAGAACTTCTGCTGGG 59 NA Rattus norvegicus 81 Fam71e1 ENSRNOG00000031739 ENSRNOT00000043724 3 1 1 61 1 100505379 100505397 CTGAGGATGAGGATGAGGT 58 100505422 100505980 CTCTGTGGCATGAAACTCC 59 NA DesignRelaxed Rattus norvegicus 81 AABR07062129.1 ENSRNOG00000048726 ENSRNOT00000010098 2 1 1 84 4 162300255 162300273 TAACTGGACATTGAGCCAG 57 162300320 162300905 TAGGAAATTCAGCTCCTCCT 58 NA Rattus norvegicus 81 Dock3 ENSRNOG00000014576 ENSRNOT00000019867 1 1 1 80 8 115746706 115748602 GATGGAGAAATCTTGAAGGACTG 59 115746648 115746671 GTAGAGAACAAAGGAGTGATAGGA 60 NA Rattus norvegicus 81 Unc5b ENSRNOG00000000567 ENSRNOT00000038537 3 1 1 83 20 30355367 30356222 CGTCTATGTGAACGGAGGT 59 30355302 30355320 GTACGTTTCTGCCAACCTC 59 NA Rattus norvegicus 81 Prg2 ENSRNOG00000008394 ENSRNOT00000011168 1 1 1 80 3 72387476 72388202 CTTTAACAAAGCTCAGTTGGTC 58 72388241 72388261 CGGAAGTTAACACTGAAACTG 58 NA Rattus norvegicus 81 Rpa2 ENSRNOG00000013005 ENSRNOT00000017549 2 1 1 80 5 150957429 150959062 AGAAGAAATCAAGAGCCCGA 59 150959103 150959123 CCTCATCAGTCAGAGTAGCAG 60 NA Rattus norvegicus 81 Hist1h1t ENSRNOG00000061863 ENSRNOT00000081345 2 1 1 60 17 43675578 43675597 TGAATAAGGGAGTCCTGGTG 59 43675537 43675555 CTAAGCTTGAAGGAGCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 C1ql3 ENSRNOG00000017459 ENSRNOT00000023637 1 1 1 99 17 80320148 80320166 CTTCACCTACCACGTCCTG 60 80314339 80314357 ATCTTGGGCAATTGCACTG 59 NA DesignNoJunction Rattus norvegicus 81 Abhd4 ENSRNOG00000009244 ENSRNOT00000012837 2 1 1 80 15 32904855 32904873 ATACCTGGATCGACACCAG 59 32904917 32905480 CCTCGATCTCCATGTCTCG 60 NA Rattus norvegicus 81 Cklf ENSRNOG00000012752 ENSRNOT00000017127 2 1 1 86 19 912355 912377 CCATCATTCTCTTTCTCATAGCC 59 908332 912311 TGATAACATCAAGCAAAGGCC 59 NA Rattus norvegicus 81 Ogg1 ENSRNOG00000052140 ENSRNOT00000085766 2 1 1 128 4 145284574 145284592 AACATTGCTCGCATCACTG 59 145284684 145286951 CTCTACTTCTGGACCAGCC 59 NA Rattus norvegicus 81 Rnft1 ENSRNOG00000003805 ENSRNOT00000005064 2 1 1 92 10 73815538 73817286 TTACACGACCAAGTTATGGAG 58 73817338 73817358 GCTTCTGAAATTCAGCTTGAC 58 NA Rattus norvegicus 81 LOC100912543 ENSRNOG00000050632 ENSRNOT00000073807 1 1 1 60 3 158932022 158932040 AACTTGGCCTTTGTAGACC 58 158931980 158932000 AGTTCATCAACATTTGCGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fpr-rs3 ENSRNOG00000045732 ENSRNOT00000039037 2 1 1 60 1 59903241 59903260 TCCTCTCAGTGGTAGTCCTC 60 59903200 59903218 ACAAGCCCATTACCTAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fgf13 ENSRNOG00000042753 ENSRNOT00000091330,ENSRNOT00000064780,ENSRNOT00000077402 2 3 3 80 X 142059268 142059286 AGATCATGAAAGGCAACCA 57 142055088 142059224 TGTACATGGCCACTTTCAG 58 NA Rattus norvegicus 81 Rab26 ENSRNOG00000042086 ENSRNOT00000004249 3 1 1 81 10 13894845 13894963 TTACAGCCATAGCAAAGGAG 58 13894783 13894801 TTCACATAGTCATGCAGCC 58 NA Rattus norvegicus 81 Mos ENSRNOG00000008567 ENSRNOT00000011602 1 1 1 60 5 16746939 16746957 AGCAAGTGAACAAGTGCAC 59 16746897 16746915 AGTTCAGCCCAGAAACTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562644 ENSRNOG00000037381 ENSRNOT00000044666 3 1 1 61 X 152108567 152109992 TCCAGAGTAAGCCTGATGG 59 152108524 152108543 TTGTTGCTAAATGCCTGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Atad2 ENSRNOG00000025604 ENSRNOT00000008508 3 1 1 80 7 97995758 97999981 GTAAACGAATGAACAGGCGA 59 98000022 98000042 AGCATTCATCTTCAGAGGAGG 60 NA Rattus norvegicus 81 Chst9 ENSRNOG00000015867 ENSRNOT00000021253 1 1 1 80 18 6865158 6969997 CAGAAAGGAGTATCGGTGAC 58 6835891 6835910 ATCTTCGGGTATGTGAACCT 59 NA Rattus norvegicus 81 Maneal ENSRNOG00000025349 ENSRNOT00000038055 2 1 1 93 5 142855292 142855310 TACCTGCCATTCTGGACTC 59 142853118 142854132 TCATTGACACAAGATGGTTGTG 60 NA Rattus norvegicus 81 Klf15 ENSRNOG00000017808 ENSRNOT00000024011 1 1 1 116 4 122369902 122369920 GATGTACACCAAGAGCAGC 59 122376594 122376612 GACAACTCATCTGAGCGTG 59 NA DesignNoJunction Rattus norvegicus 81 Glra3 ENSRNOG00000049792 ENSRNOT00000075026 2 1 1 80 16 37848959 37848979 CCTCCAGTTAATGTCACATGC 59 37818462 37848923 GTTTACTCTGTAATCCATAGTCGTC 59 NA Rattus norvegicus 81 Lrrc3b ENSRNOG00000005857 ENSRNOT00000007672 2 1 1 60 15 11299144 11299164 TACTACGTGAGGCAGAATCAG 59 11299183 11299204 GCAGGGATTTCAAGTATTCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hax1 ENSRNOG00000045647 ENSRNOT00000076846 1 1 1 100 2 189333248 189333272 CAGAGTTTCAAAGTTTCTAGTACCC 60 189332687 189333190 AAAGGATCTCTGTGGCTCC 59 NA Rattus norvegicus 81 Kcnmb2 ENSRNOG00000010094 ENSRNOT00000090301 1 1 4 95 2 118547244 118584993 AGAAATATCTACCAGAAGGGAACC 60 118585047 118585065 TACACGTTGGCCAGAAGAG 60 NA InUTR Rattus norvegicus 81 Kcnmb2 ENSRNOG00000010094 ENSRNOT00000090301 2 1 4 97 2 118563010 118584994 AATATCTACCAGAAGGGAACCA 59 118585052 118585070 CATCATACACGTTGGCCAG 59 NA InUTR Rattus norvegicus 81 Alg13 ENSRNOG00000005753 ENSRNOT00000077034,ENSRNOT00000076521,ENSRNOT00000087859 1 3 4 92 X 115585310 115586072 GATCCTCAGGAGAGTGCTG 59 115586928 115586946 TGGCTTTCCAGGATAACGA 59 NA Rattus norvegicus 81 Snrpd1 ENSRNOG00000013714 ENSRNOT00000018646 1 1 1 80 18 1868734 1868754 TTGAGTCATGAAACCGTAACC 59 1868795 1872133 CATGCTGACATCTACACCTG 59 NA Rattus norvegicus 81 LOC100912609 ENSRNOG00000048926 ENSRNOT00000075717 2 1 1 60 4 170128818 170128837 ATCCAAAGTTACGAGAAGCA 57 170128777 170128797 CATGATGGTACTTCTCTGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pbp2 ENSRNOG00000008667 ENSRNOT00000011461 1 1 1 60 4 169092881 169092902 AACTCTACACCTTGATCCTCAC 60 169092842 169092865 CTGTATATGGGTTCTTTCCTACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phc1 ENSRNOG00000015191 ENSRNOT00000020529 2 1 1 80 4 155102066 155109419 AGATGCAGATCAGGTGCAG 60 155102004 155102024 TGAGTAGAGCCTGGTATTTGG 59 NA Rattus norvegicus 81 Sap30bp ENSRNOG00000005482 ENSRNOT00000007362 1 1 1 80 10 104484757 104484777 GATGAGAACAGTAAGCAGTCG 59 104487328 104501494 TTCTGTGTTATCCTTTGGGTC 58 NA Rattus norvegicus 81 Ercc6l2 ENSRNOG00000019175 ENSRNOT00000025965 3 1 1 80 17 1343065 1343086 GGAAATGTGAAATTGCTCTGAC 59 1343126 1349567 TAGCTGACCATTCCAAACTG 58 NA Rattus norvegicus 81 Fam71f2 ENSRNOG00000039383 ENSRNOT00000060353 3 1 1 80 4 56563106 56563124 CCAAAGACCCAAGGATCCA 59 56563166 56564247 TGCTTTCAGGTGTTGTTTCAG 60 NA Rattus norvegicus 81 Tbl3 ENSRNOG00000013429 ENSRNOT00000018405 1 1 1 80 10 14067525 14067630 ACTGTTATCCAGGCCATCC 59 14067463 14067481 CTGGTCTCTTCGAAGTCGG 60 NA Rattus norvegicus 81 Sec24c ENSRNOG00000009042 ENSRNOT00000012270,ENSRNOT00000084350,ENSRNOT00000090352 2 3 3 80 15 4040901 4041094 CAGCTGTATCAATGATGTGCC 60 4040841 4040859 GGACGGTCATAAGCATCCA 60 NA Rattus norvegicus 81 Senp1 ENSRNOG00000022260 ENSRNOT00000030943,ENSRNOT00000080056 1 2 2 80 7 139633283 139633301 CTGTGGAATGTTTGCTTGC 58 139630564 139633239 TATGGCATGTGTTGCTGTG 59 NA Rattus norvegicus 81 Arpp19 ENSRNOG00000023086 ENSRNOT00000030221 1 1 1 74 8 81963917 81968420 AAAGATTGCAGAAAGGGCA 58 81968457 81968476 GCTTGTTCTTCATCTTTGCT 57 NA DesignNoJunction Rattus norvegicus 81 Cinp ENSRNOG00000008035 ENSRNOT00000010598 1 1 1 80 6 135297053 135300071 CACCTTGTTGAGTAAAGAGAAGG 59 135296995 135297015 TCCAGGTTTGTCTTCTCTTCC 60 NA Rattus norvegicus 81 Arhgef1 ENSRNOG00000020130 ENSRNOT00000065865,ENSRNOT00000080143,ENSRNOT00000089592,ENSRNOT00000080840 3 4 4 80 1 81793822 81794026 CTGAGCGAGTTCAAGAACC 59 81794070 81794088 GTCTTTGGTTAGTCGCCAC 59 NA Rattus norvegicus 81 Gabarapl1 ENSRNOG00000053362 ENSRNOT00000077356 2 1 1 81 4 163297942 163297960 AGAAGGCTCCTAAAGCCAG 59 163298004 163298941 TAGAACTGGCCAACAGTGAG 60 NA Rattus norvegicus 81 Ccdc142 ENSRNOG00000022326 ENSRNOT00000035329 1 1 1 84 4 113939986 113940004 TGTCATAAGCAAGCCACAC 59 113940052 113940373 TGGGATGTTCAGGACACAG 59 NA Rattus norvegicus 81 Ptch1 ENSRNOG00000019354 ENSRNOT00000086130,ENSRNOT00000026287 3 2 2 80 17 1047033 1047051 GGTCCTCGCTTACAAACTC 58 1044951 1046990 AGACGCTGTTTAGTCAACTG 58 NA Rattus norvegicus 81 Psmb8 ENSRNOG00000000456 ENSRNOT00000083291,ENSRNOT00000000528,ENSRNOT00000089996 1 3 3 80 20 3991814 3991962 CAGGAAGTTACATTGCTACCA 58 3992004 3992022 CACAACCAGACATGGTTCC 59 NA Rattus norvegicus 81 Oca2 ENSRNOG00000014465 ENSRNOT00000019498 3 1 1 80 1 114773044 114780935 AGAGCTACAAAGAAAGCATAGG 58 114780975 114780994 ATGGAGATGACAAATCCCAG 57 NA Rattus norvegicus 81 Capn1 ENSRNOG00000020935 ENSRNOT00000028431 3 1 1 80 1 221349285 221349303 ACGGTAATGGGAAACTGGG 60 221348952 221349242 ACTTTCGGAAGATGGTCAGG 60 NA Rattus norvegicus 81 Arpc5l ENSRNOG00000014317 ENSRNOT00000019405 3 1 1 100 3 23306160 23306708 ATCAAGCTGTGAAGGAACGA 60 23306771 23306789 ATTCCTGTCCAGTGACTGC 60 NA Rattus norvegicus 81 RGD1566226 ENSRNOG00000026061 ENSRNOT00000089660,ENSRNOT00000038748 3 2 2 80 3 121980958 121983658 AGACCAGTATCTTTATGTTCCTCC 60 121980901 121980919 TGGCAAGTAACAGTCACCA 59 NA Rattus norvegicus 81 Rlim ENSRNOG00000002824 ENSRNOT00000091325 3 1 1 81 X 73765713 73765732 GTTGCTCAGAAGACTACAGC 59 73764435 73765670 ATCTGAAGACTCTCCAGCTC 59 NA Rattus norvegicus 81 Dpcr1 ENSRNOG00000042287 ENSRNOT00000068159 1 1 1 80 20 3612011 3612030 GCCTCTATCCTATGTTTGGC 58 3612071 3617933 CTTGAAATGTGTTAGCACCTG 58 NA Rattus norvegicus 81 Ptpn12 ENSRNOG00000013135 ENSRNOT00000081939,ENSRNOT00000017907 3 2 2 80 4 10666076 10668913 ATGTGGTGATCATTGTAATGGC 60 10671221 10671241 CTCCATACAAAGGCCAATAGC 59 NA Rattus norvegicus 81 Alpk3 ENSRNOG00000011659 ENSRNOT00000015898 2 1 1 80 1 142883185 142889313 GGAGGCTAGCTTATCAAGCA 60 142893245 142893265 GTAAGCTGAGCAATGATGGAG 59 NA Rattus norvegicus 81 Cts7 ENSRNOG00000033540 ENSRNOT00000043686 2 1 1 81 17 3281873 3281891 GCACACTATGCAGAATGGC 60 3281934 3282042 CATTTCCTCACCAGTCATGTC 59 NA Rattus norvegicus 81 LOC102549173 ENSRNOG00000045644 ENSRNOT00000074763 2 1 1 63 17 43807299 43807318 ATCGCTCAGGACTTCAAGAC 60 43807255 43807273 CTTCCTGTAGGGCCATGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdyn ENSRNOG00000026036 ENSRNOT00000037576 2 1 1 97 3 122197572 122197590 TGAGGTTACAGCAGACTGC 60 122196385 122197511 ACTCCAGGGAGCAAATCAG 59 NA Rattus norvegicus 81 Tnfaip2 ENSRNOG00000010165 ENSRNOT00000042973 1 1 1 80 6 135898167 135898187 CTTTGAAAGACCTCAAGGCTC 59 135898226 135899001 ACTTCTTAAACAGTGGCTTCAG 59 NA Rattus norvegicus 81 Sfr1 ENSRNOG00000012641 ENSRNOT00000088962 1 1 2 88 1 267495953 267495971 GAAACCAAGTGCATGGGAG 59 267496023 267507113 GTCCCACTCATAGGCTGTG 60 NA Rattus norvegicus 81 Sfr1 ENSRNOG00000012641 ENSRNOT00000016881 1 1 2 80 1 267505404 267506313 CTGAGGAAGAAGGAAATCAGG 58 267506354 267506373 GAGGAATGTCAGGTGAAGTG 58 NA Rattus norvegicus 81 Gja5 ENSRNOG00000017484 ENSRNOT00000023488 2 1 1 98 2 199162792 199181924 AAGGAAGCAGAAGGCTCAG 60 199181986 199182004 GTAGAGTGCTTGTGGACCT 59 NA InUTR Rattus norvegicus 81 Car15 ENSRNOG00000037983 ENSRNOT00000000312 2 1 1 80 11 87761004 87761446 CCATACAGTGCTACTGCGA 60 87760942 87760961 TATTCTGATGATGGGAGCCC 59 NA Rattus norvegicus 81 Timm17a ENSRNOG00000007040 ENSRNOT00000009398 2 1 1 80 13 52125099 52126071 ACAGTTTCCTAATGGCCCTC 60 52125038 52125056 TCTCCAAATGGTGAGGACG 59 NA Rattus norvegicus 81 Tnfrsf1b ENSRNOG00000016575 ENSRNOT00000022478 1 1 1 80 5 163148601 163148619 AGGCATGTTTACCCAGGTC 60 163147434 163148557 GTCTCCACCTGGTCATCAC 60 NA Rattus norvegicus 81 Vpreb1 ENSRNOG00000052348 ENSRNOT00000081776 2 1 1 172 11 88376310 88376328 GACTGCTTCCTAGCTGGTC 60 88376551 88376569 TTCCAAGGAAGGAAGAGGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC679881 ENSRNOG00000017095 ENSRNOT00000023010 2 1 1 87 1 35868421 35868440 AAGATCCTTGTTCCTGAGGG 59 35868490 35868512 AGGCCTCAATATCCTGAGG 58 NA Rattus norvegicus 81 Eng ENSRNOG00000050190 ENSRNOT00000074562,ENSRNOT00000071801 2 2 2 80 3 11708862 11708880 TCATGTCCCTGATTCAGCC 60 11708924 11712685 ACTGTAGAGTCTGCACGAG 59 NA Rattus norvegicus 81 Setbp1 ENSRNOG00000016208 ENSRNOT00000021717 2 1 1 61 18 75203899 75203917 AGGCCTTCAAGATGAATCG 58 75127374 75203874 CATCCCTGGAGTCATCGAG 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0746.1 ENSRNOG00000051044 ENSRNOT00000075847 2 1 1 60 X 73790355 73790375 GACATGTACAAGGGATACTGC 59 73790395 73790415 CACTCATCAATCACAAGGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fmo5 ENSRNOG00000018076 ENSRNOT00000024423 3 1 1 81 2 199807152 199807170 ATTGTCATTGGCATTGGGA 58 199807215 199811556 TGGTACTGAGGAACACCTG 59 NA Rattus norvegicus 81 AABR07068455.1 ENSRNOG00000046623 ENSRNOT00000075578 1 1 2 118 9 105944864 105946151 TCTCGCTATCTGCATCAGG 59 105946233 105946251 CTGGGAGTTCAGTCTGCTC 60 NA Rattus norvegicus 81 LOC100362219 ENSRNOG00000024053 ENSRNOT00000061058 1 1 1 92 X 5885039 5886716 AAAGCCTACATGCCAACCT 60 5884965 5884987 CCAAATAACTCTTCACTAGGTGG 59 NA Rattus norvegicus 81 LOC100362219 ENSRNOG00000024053 ENSRNOT00000061058 2 1 1 93 X 5885040 5886717 CAAAGCCTACATGCCAACC 60 5884965 5884987 CCAAATAACTCTTCACTAGGTGG 59 NA Rattus norvegicus 81 RGD1562063 ENSRNOG00000033520 ENSRNOT00000049198 1 1 1 80 7 117428876 117428896 CTACCAGAATCACTCAGAGAC 57 117428938 117429041 GAGGATCGGATAAAGCCAG 58 NA Rattus norvegicus 81 Reg4 ENSRNOG00000019046 ENSRNOT00000025821 1 1 1 80 2 200398021 200402914 GAAGTCCTGAGTGATATCTTGAG 58 200402954 200402972 CCGGAAGTACCCATAACAG 57 NA Rattus norvegicus 81 Mir500 ENSRNOG00000036262 ENSRNOT00000054385 3 1 1 61 X 16121351 16121369 TATCTGGGTGCTTAGTGCT 58 16121394 16121412 CTCACCTTCTCTGAACCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxl17 ENSRNOG00000013875 ENSRNOT00000064431 3 1 1 80 9 110665287 110665306 TTATCGCAAAGGAGGGACAG 60 110531953 110665247 CAATGGCTATCAGTGCATAGTC 59 NA Rattus norvegicus 81 Mob3b ENSRNOG00000009453 ENSRNOT00000012519 3 1 1 86 5 50472702 50472721 TCAACACCTGCTACAAACAC 59 50439965 50472654 TCATCTCTTTCAAGGGCTCC 60 NA Rattus norvegicus 81 Rimbp2 ENSRNOG00000022893 ENSRNOT00000067867,ENSRNOT00000033379,ENSRNOT00000086078 1 3 3 87 12 31589113 31589894 CAGATCATCAAGGTATATGGAGAC 59 31589940 31589958 TGTTACAGGGAATGAGGCC 59 NA Rattus norvegicus 81 Tprn ENSRNOG00000010896 ENSRNOT00000014489 3 1 1 85 3 2486810 2486832 CAGAGAAATCCTTCACAGTTCTC 59 2486877 2486982 GTAGCTGGACAGACCTGAG 59 NA Rattus norvegicus 81 Exosc1 ENSRNOG00000048708 ENSRNOT00000074420,ENSRNOT00000072073 1 2 2 80 1 261170328 261170907 CAGTGAGTCAGGTGTCCAG 60 261170266 261170287 TTTCGGAATTCTTTAGTGTGGG 59 NA Rattus norvegicus 81 Ccsap ENSRNOG00000017690 ENSRNOT00000023911 1 1 1 82 19 56620581 56620599 AGAGACAGATGGACATGGG 59 56617756 56620537 AAGTGCTGACTCATGAATCTC 58 NA Rattus norvegicus 81 RGD1563263 ENSRNOG00000006884 ENSRNOT00000009068 3 1 1 84 3 81294572 81294590 TCAGCGATCTGTTCCTGAG 59 81294638 81294823 TCTTAGCCCGTAGTCATCC 58 NA Rattus norvegicus 81 Ino80c ENSRNOG00000016532 ENSRNOT00000022169 2 1 1 80 18 16002330 16003567 GATCCCAACTTTGTGCACTC 60 16002269 16002290 GATCTGTTTGAGGTTCTTCCAG 59 NA Rattus norvegicus 81 Gcc1 ENSRNOG00000007792 ENSRNOT00000010246 1 1 1 90 4 55711529 55712540 AAATGAGGAAGACAGCCCT 59 55711457 55711475 GAGATCTGGTTCTCCAGGG 59 NA Rattus norvegicus 81 Vmp1 ENSRNOG00000003967 ENSRNOT00000005658 2 1 1 80 10 73963170 73980856 CTTTCTGCTTTATCTGGGCC 59 73963109 73963127 GGCTCAGGGAAATTAACCG 59 NA Rattus norvegicus 81 LOC100911374 ENSRNOG00000001756 ENSRNOT00000091575,ENSRNOT00000029842 2 2 2 80 11 72801685 72801703 CAACCGTGATGTATGGAGC 59 72799839 72801643 CTGTCATGATAAACCTGCCAG 59 NA Rattus norvegicus 81 Olr717 ENSRNOG00000046433 ENSRNOT00000048787 2 1 1 60 3 78639678 78639696 ACACTTACTTCCTTGGGCT 59 78639636 78639657 AAGACCACTACAGATATTGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rspry1 ENSRNOG00000060931 ENSRNOT00000090217 1 1 1 80 19 10806010 10806028 TTGGAAGATCCACTGGGAC 59 10804153 10805969 TTTCTGGAGTGCATCTTTAGTG 59 NA Rattus norvegicus 81 LOC686074 ENSRNOG00000030364 ENSRNOT00000051911 2 1 1 60 18 24312807 24312826 CCAAGCTCTCCAAGATACGA 59 24312766 24312785 TTAATGACAGTGAGGACACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059072.1 ENSRNOG00000050173 ENSRNOT00000070847 3 1 1 83 4 3122792 3122810 CGTTCAGCTGCTTATGCTG 60 3122725 3122748 ATAAGAGACCTGAACAACCCTC 60 NA Rattus norvegicus 81 Camp ENSRNOG00000020733 ENSRNOT00000028130 3 1 1 60 8 117932192 117932210 AATCTCTACCGTCTCCTGG 58 117931646 117932169 GAGTATCTGGGTCCTCATCC 59 NA DesignNoJunction Rattus norvegicus 81 Wdr20 ENSRNOG00000007333 ENSRNOT00000009709,ENSRNOT00000082595 2 2 2 136 6 135198918 135198936 CTTCAACCACCTAACAGCC 59 135199030 135213007 GTGACTTGTCTATTAGTCTTTCCTC 59 NA Rattus norvegicus 81 AABR07044714.1 ENSRNOG00000053936 ENSRNOT00000089481 1 1 1 80 20 18157207 18157225 GCCCTCCTTTCCTTAACCA 59 18157268 18157289 CCACAGGAATCGGAAATCTC 59 NA Rattus norvegicus 81 Maz ENSRNOG00000055082 ENSRNOT00000082940,ENSRNOT00000086019 1 2 2 81 1 198458188 198458208 TCAGCTTATATTTCGGACCAC 58 198456845 198458145 CACCAGTACCTTTGTTGCA 58 NA Rattus norvegicus 81 Dab2ip ENSRNOG00000055226 ENSRNOT00000080760,ENSRNOT00000083134 2 2 2 81 3 15052824 15056826 ATCAGCAGGTTGATGTCTG 58 15056870 15056889 TCTTCTGTTTGGAGTCTACG 57 NA Rattus norvegicus 81 Rfc2 ENSRNOG00000001457 ENSRNOT00000001989 1 1 1 80 12 25133594 25135077 GTATTCAAGGTCTGTGACGAG 59 25133534 25133552 CTCATCAATGTTGGCGTCC 59 NA Rattus norvegicus 81 Rfc2 ENSRNOG00000001457 ENSRNOT00000001989 3 1 1 80 12 25133595 25135079 ATGTATTCAAGGTCTGTGACGA 60 25133536 25133554 CATCAATGTTGGCGTCCAC 60 NA Rattus norvegicus 81 Slx1b ENSRNOG00000019369 ENSRNOT00000026231 2 1 2 82 1 198116553 198116687 TGTCCTAGCTGCAAGAAGTC 60 198116490 198116509 AAATCCACCTCTTCCTCCTC 59 NA Rattus norvegicus 81 Coa7 ENSRNOG00000010636 ENSRNOT00000014401 3 1 1 65 5 127929338 127929356 TGACAGCTGTTACAAGCTG 58 127934017 127934035 TTTAGGTCCTGAGTGAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Krtap15-1 ENSRNOG00000049399 ENSRNOT00000072546 3 1 1 60 11 28780580 28780600 CGGCAATGTAGTTTATTCTCC 57 28780621 28780640 CTGTCCATTGTAGAAAGCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pgrmc1 ENSRNOG00000012786 ENSRNOT00000079231 1 1 2 80 X 123209963 123212613 CTCAGTTCACCTTCAAGTACC 58 123212653 123212673 CTTCATCATCCGAGTACACAG 58 NA Rattus norvegicus 81 Syna ENSRNOG00000050672 ENSRNOT00000074788 3 1 1 61 12 25161156 25161174 GAAGCCTTTCCATCAGAGC 59 25161199 25165168 CTTATGGAAGCTGGACCGA 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Trappc8 ENSRNOG00000022202 ENSRNOT00000021263 1 1 1 80 18 15299150 15311334 CTTCCGAAGTTCACATGAGAG 59 15311375 15311394 TGACAATGTTGCTTACTGCT 58 NA Rattus norvegicus 81 AABR07065651.3 ENSRNOG00000050912 ENSRNOT00000073304 1 1 1 82 6 138631737 138631760 CTATACCTGCAAATGGATAGTCTG 59 138631635 138631698 TGCTGGTCACTAGTATCTGTG 59 NA Rattus norvegicus 81 Caln1 ENSRNOG00000000886 ENSRNOT00000001185 2 1 1 80 12 29655106 29655124 CAACCGATCTCTGTCTGCA 60 29537540 29655063 GCTTCTCGGATTTCATCGAG 59 NA Rattus norvegicus 81 Olr475 ENSRNOG00000030468 ENSRNOT00000052240 1 1 1 60 3 73390746 73390769 GGACCTACGGTTTATATTTCTGTG 59 73390786 73390806 GGATCAGCACAATAGAAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr475 ENSRNOG00000030468 ENSRNOT00000052240 2 1 1 60 3 73390852 73390873 CACAATGATAGTTATTGCCGGA 59 73390894 73390912 TGAAATGAGAACCACCGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snrpa ENSRNOG00000001501 ENSRNOT00000002053 2 1 1 80 1 84000036 84001524 TCTTCAACCAGTTCCCTGG 59 83999974 83999994 CATTGTCAAACTCCACGAAGG 60 NA Rattus norvegicus 81 LOC100910068 ENSRNOG00000025725 ENSRNOT00000035678 1 1 1 80 7 116035454 116035474 AACCTTAACTGCTCGAATCCA 60 116034456 116035414 ACGTTCGAATATTCGTGTGAC 59 NA Rattus norvegicus 81 Nme7 ENSRNOG00000002898 ENSRNOT00000058897 3 1 1 80 13 82676071 82681016 CGAGTATAATGACATGGTGACAG 59 82681055 82681074 GTCTTCGTAGGATTGCTCTG 58 NA Rattus norvegicus 81 Acp6 ENSRNOG00000017494 ENSRNOT00000043194 1 1 1 80 2 199303468 199303487 CCCATTCCTCTACATCCTGG 59 199303529 199304864 TACATCTTCCTGGTCTTGCT 59 NA Rattus norvegicus 81 Rangrf ENSRNOG00000004980 ENSRNOT00000006883 2 1 1 80 10 55560120 55560221 TTGATGTGAGTGACCTCCG 59 55560058 55560078 CTATGATCAGACTCTGGTCGG 60 NA Rattus norvegicus 81 Odf3b ENSRNOG00000037060 ENSRNOT00000055805 1 1 1 169 7 130350231 130350469 AAACACCGGTTACAAACTGC 60 130350081 130350099 CATAGATGGAGAAGGCCGG 60 NA Rattus norvegicus 81 Supt4h1 ENSRNOG00000007845 ENSRNOT00000010448 3 1 1 81 10 75032983 75033003 GCATACCTACAAATGAAGGGC 60 75033045 75037142 TCATCATCGCGATGATTCCA 60 NA Rattus norvegicus 81 Yipf7 ENSRNOG00000002224 ENSRNOT00000003024 3 1 1 80 14 62577401 62594264 TTTCTATGGATCCAGACAACCA 59 62577342 62577363 GATGACAAGAACATCTCTGGTG 59 NA Rattus norvegicus 81 Ncoa4 ENSRNOG00000019768 ENSRNOT00000066062,ENSRNOT00000026803 1 2 2 80 16 8316601 8316619 GCTCTTTGAAGCAGATGCA 59 8316661 8317146 TGCTCAGGAATTTGAATGGTC 59 NA Rattus norvegicus 81 Gphn ENSRNOG00000028366 ENSRNOT00000075054,ENSRNOT00000030470 2 2 2 80 6 101786938 101795044 GGGAATGAGCTACTAAATCCTG 58 101795083 101795103 TGTTGCTAGAAGTGTTGATCG 59 NA Rattus norvegicus 81 Rn60_11_0375.5 ENSRNOG00000051106 ENSRNOT00000075943 3 1 1 60 11 33840714 33840734 AGAAGAGGTTGACTCTCACAG 59 33840756 33840774 CATACAAGTCTGTGGGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd1 ENSRNOG00000018598 ENSRNOT00000025258 2 1 1 80 1 254732464 254733437 TGCGATGAGTATAAACGGAC 58 254732403 254732422 AGCCTCCATTAACTTCTCCA 59 NA Rattus norvegicus 81 Zbtb43 ENSRNOG00000017017 ENSRNOT00000022814 2 1 1 80 3 12502825 12502843 ATTCATCCCAGATAGGGCA 58 12494594 12502783 TCTTGTTTAGTGTGGTTCGAC 59 NA Rattus norvegicus 81 Olr1393 ENSRNOG00000047749 ENSRNOT00000049754 1 1 1 60 10 34662710 34662728 CTTCTTCTGTGAGATGCCC 58 34662752 34662770 TTCTGTTCCTCCTGTGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Iqcf1 ENSRNOG00000037289 ENSRNOT00000056391 3 1 1 96 8 115193215 115193611 GAACAATGGATGAGGAGCA 58 115193671 115193689 TCTGAGGACAGATCAGCTG 59 NA InUTR Rattus norvegicus 81 Skor2 ENSRNOG00000018006 ENSRNOT00000031993 2 1 1 103 18 73161547 73161567 AGCAAAGGATGACAACTTCTC 59 73162143 73175690 TGTGTTCACCTGATCTTTCTC 58 NA Rattus norvegicus 81 Cabp5 ENSRNOG00000014787 ENSRNOT00000020090 3 1 1 80 1 75698506 75701045 CAAATCCGAATGAACCTTGG 58 75701087 75701106 TGTTTCTGCAAGCAATTTGG 58 NA Rattus norvegicus 81 Crp ENSRNOG00000000053 ENSRNOT00000000058 3 1 2 83 13 91080503 91080744 GTCATGAAGACATGTCTAAACAGG 60 91080785 91080804 TCTTTGACTCTGCTTCCAGG 60 NA Rattus norvegicus 81 Vom2r29 ENSRNOG00000038497 ENSRNOT00000040441 2 1 1 80 1 74257795 74257813 AGAGTCATCTGCAACAGGT 59 74257854 74265851 AGGAGTTTAACTTCAAGCAGTG 59 NA Rattus norvegicus 81 Mir2964 ENSRNOG00000035452 ENSRNOT00000053575 3 1 1 60 3 8407433 8407451 GAGCTCAACCACAGATGTC 58 8407473 8407493 CAATTCTTGTACGAGTCTGCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC689766 ENSRNOG00000021411 ENSRNOT00000029081 2 1 1 80 13 95902004 95902024 GGACAAGTGGCATAATGAGAC 59 95902063 95907633 CCTAGTTTCTTATCCCAACCGA 60 NA Rattus norvegicus 81 Copg2 ENSRNOG00000011014 ENSRNOT00000033706 2 1 1 80 4 58100396 58100949 TGCTTCGAGATGATGGAGG 59 58100334 58100352 TCTCAGGGTTCTCTTCCAC 58 NA Rattus norvegicus 81 Olr209 ENSRNOG00000045692 ENSRNOT00000041335 3 1 1 60 1 170763330 170763349 GTTCTTTCATCTTGGTCGGG 59 170763289 170763307 ACAGCACAGAGCATTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr38 ENSRNOG00000014102 ENSRNOT00000018921 2 1 1 80 3 23294075 23294093 CTGGGTCAATAGCCTAGCC 60 23294136 23294416 TCCCAGACTTTGACCATACG 60 NA Rattus norvegicus 81 Olr901 ENSRNOG00000054865 ENSRNOT00000071164 1 1 1 60 7 5325037 5325059 CTCATGTCCTAGAAATGATGTCC 59 5325077 5325097 ACCAGTGTAACTACAAGTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp7 ENSRNOG00000025496 ENSRNOT00000046232 2 1 1 80 10 7015803 7015821 CACGGACTTTGAGAACAGG 59 7015860 7016495 GGGTATAGTGTTATTTCCTCTTCC 59 NA Rattus norvegicus 81 AABR07062154.1 ENSRNOG00000061420 ENSRNOT00000081340 3 1 1 60 4 162831459 162831478 CATCAGCTATGGAGACAGAC 58 162831418 162831437 AGATTGCTGCTTGAGTTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp638 ENSRNOG00000014501 ENSRNOT00000019617 1 1 1 80 4 115631243 115636566 GCAGTTACGTCAACAATACCC 60 115638112 115638130 CGGTGGCAAATTCTTGGAC 60 NA Rattus norvegicus 81 Olr1870 ENSRNOG00000045610 ENSRNOT00000044955 3 1 1 60 7 9342383 9342404 CCTTAAACCATCAGTCAAGCAG 60 9342422 9342443 GGTATTGAGCACAGAAATTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zyg11a ENSRNOG00000010885 ENSRNOT00000014514 3 1 1 80 5 127801721 127803099 TTCCATTTGACAGGTTTGACG 60 127801661 127801680 CCATCATCTGCATCTTTGGG 59 NA Rattus norvegicus 81 Il22 ENSRNOG00000007365 ENSRNOT00000009776 2 1 1 93 7 61236204 61236222 CTTTATGCTGGCCAAGGAG 59 61236683 61236817 ATCCTTGGCTTTGACTCCT 59 NA Rattus norvegicus 81 Misp ENSRNOG00000010423 ENSRNOT00000013857 2 1 1 84 7 12699202 12700528 AAGGAGTCGTGGTATGCAG 60 12698269 12698287 TCTTGTGTCGCTTTACCCT 59 NA Rattus norvegicus 81 Chrna7 ENSRNOG00000010853 ENSRNOT00000082487,ENSRNOT00000051883 3 2 2 80 1 123960025 123970481 CATTTGGCTACAAATGTCTTGG 59 123959966 123959986 AAACGAACATTCTTCACTCCG 59 NA Rattus norvegicus 81 Mrpl35 ENSRNOG00000008546 ENSRNOT00000012021 1 1 1 80 4 99741316 99741334 AGAAAGACAGTGAAGTCGG 57 99739989 99741273 CTTATAGCCAGCCTTTCTCC 58 NA Rattus norvegicus 81 Ntrk2 ENSRNOG00000018839 ENSRNOT00000082611,ENSRNOT00000042145,ENSRNOT00000090914 2 3 3 80 17 6187161 6187183 CAAGAATGAATATGGGAAGGACG 60 6177174 6187124 GGGTTTGTCTCATAGTCAACTC 59 NA Rattus norvegicus 81 Kcnk1 ENSRNOG00000019937 ENSRNOT00000027058,ENSRNOT00000088626 3 2 2 84 19 58857154 58861181 GATCACGTGTTACCTGCTC 58 58861228 58861247 GAATTTCTTCAGCTCGTGGA 58 NA Rattus norvegicus 81 LOC100912262 ENSRNOG00000050193 ENSRNOT00000085696,ENSRNOT00000002006 3 2 2 80 12 29026480 29026499 CCTCTCATCCAGAATGTCCA 59 29026541 29028105 GAAGGGATCCCACTTCTCTG 60 NA Rattus norvegicus 81 Smyd4 ENSRNOG00000026783 ENSRNOT00000029866 3 1 1 81 10 62221042 62221062 CACTGAGGACATTTCATTGTG 58 62221102 62223782 GTCTTTAAGACATGCTTCATGC 58 NA Rattus norvegicus 81 Tmem9 ENSRNOG00000010204 ENSRNOT00000013738,ENSRNOT00000086004 3 2 2 81 13 52860363 52860381 TGATGTGGAAGCCTACTGC 60 52860422 52863399 GATGACGATAATGACCTTGATGG 60 NA Rattus norvegicus 81 Bean1 ENSRNOG00000013301 ENSRNOT00000064781,ENSRNOT00000017774 2 2 2 87 19 949940 951688 ATTCTCCACCAGGCTATGAG 59 949872 949890 GTCATCGAGTAGGGTGGTG 60 NA Rattus norvegicus 81 Pcdhb11 ENSRNOG00000020066 ENSRNOT00000027179 3 1 1 60 18 30497442 30497462 GGACAATGGAAGAATGATGTG 57 30497482 30497502 TGTGGGTTTAAGGAGAAATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Med25 ENSRNOG00000020363 ENSRNOT00000027675 2 1 1 80 1 100880845 100881126 CAGAAGATAGGAGAGCGTGG 60 100880784 100880806 CTTCTCAAACAGAAGCCTAAGTG 60 NA Rattus norvegicus 81 Ccdc174 ENSRNOG00000010090 ENSRNOT00000013498 2 1 1 80 4 123781161 123781179 CTTTGCCCGAGACAAAGAG 59 123781220 123783269 ATTCTCTGATCTGTTGTCTGCT 60 NA Rattus norvegicus 81 Anxa7 ENSRNOG00000007136 ENSRNOT00000061686 2 1 1 80 15 4278907 4280874 CTCGGAGTGAGATTGACCT 59 4280916 4280936 TTGCAATCATCGTGCTTAGAG 59 NA Rattus norvegicus 81 Polr2e ENSRNOG00000013545 ENSRNOT00000018169 2 1 1 80 7 12532995 12533937 GACTATCATGCAGCTGTGTC 59 12533978 12533998 GCCTTGAACTCTTCAAGTGTC 60 NA Rattus norvegicus 81 Rnd1 ENSRNOG00000059857 ENSRNOT00000077856 1 1 1 80 7 140355350 140355370 GAATTACACAGCCTGTTTGGA 59 140352682 140355308 TCATAGTACGGAGAGCCTG 58 NA Rattus norvegicus 81 Rnd1 ENSRNOG00000059857 ENSRNOT00000077856 3 1 1 80 7 140351592 140352598 CACTCAAGAAGTGGAGAACAG 59 140351532 140351550 GAAGATCTGTCTTGCAGCC 59 NA Rattus norvegicus 81 Gba3 ENSRNOG00000024634 ENSRNOT00000029104 2 1 2 80 14 64391595 64475193 ATTCAAAGTCTACTGTGCGTG 59 64391535 64391553 TGGAAGAGACCAAACCGTC 60 NA Rattus norvegicus 81 Zfp191 ENSRNOG00000016562 ENSRNOT00000022304 1 1 1 60 18 15918279 15918298 GTAGAGAACCAGCTCAAGTG 58 15915131 15918256 CATCATCACAGTGCCTCAG 58 NA DesignNoJunction Rattus norvegicus 81 Rn60_10_0644.1 ENSRNOG00000022699 ENSRNOT00000036962 1 1 1 60 10 63627790 63627809 ACATCTACCCATAAGGTCGT 58 63627749 63627768 ACTCTGGTGTATCATTGGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0644.1 ENSRNOG00000022699 ENSRNOT00000036962 2 1 1 60 10 63627790 63627809 ACATCTACCCATAAGGTCGT 58 63627749 63627770 ACTCTGGTGTATCATTGGTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0698.7 ENSRNOG00000051109 ENSRNOT00000076821 1 1 1 60 10 70097717 70097741 CTGAGATCGTTAAGTGATTACTTCC 60 70097681 70097700 AGTAACTTCAGCCTCTGCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kif27 ENSRNOG00000019257 ENSRNOT00000026054,ENSRNOT00000080683 2 2 2 80 17 6766306 6766326 ACCTCAAGAAGAGACTGAAGG 59 6766368 6770643 CTCCAGCATCATGATGCTC 59 NA Rattus norvegicus 81 Flnc ENSRNOG00000007281 ENSRNOT00000027237,ENSRNOT00000088149 2 2 2 80 4 56721887 56721905 GAAGACATCCGGGACTCAC 60 56721948 56722064 GAAGGCTTTCACCTTGTCTG 59 NA Rattus norvegicus 81 LOC688424 ENSRNOG00000000252 ENSRNOT00000000269 3 1 1 60 19 3609049 3609068 GGAAAGAAGGTATCCAAGGG 58 3609088 3609109 GATTAACTGCATCCTTACTGGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gusb ENSRNOG00000000913 ENSRNOT00000041645,ENSRNOT00000001215 1 2 2 80 12 30212306 30212328 TGGTATAAGATGTACCAGAAGCC 60 30212368 30214149 AGGTGGATCCTCATGAAGC 59 NA Rattus norvegicus 81 Nr2f1 ENSRNOG00000014795 ENSRNOT00000020044 3 1 1 86 2 5570959 5576032 GTTCACGTCAGATGCTTGTG 60 5570892 5570910 ACGTATTCCTCCAGTGCAC 60 NA Rattus norvegicus 81 Ddx46 ENSRNOG00000021637 ENSRNOT00000029885 1 1 1 80 17 9480215 9480234 GCTAGAGATTGCCAAGAGGT 60 9478644 9480174 TGCATCACATCTACCTGAGAC 60 NA Rattus norvegicus 81 Rfx6 ENSRNOG00000027949 ENSRNOT00000030642 3 1 1 80 20 32741541 32741560 AACCCTTCTTCCAGAATTCC 58 32741601 32744623 ATGAGAGTGTCAACCTTATCC 57 NA Rattus norvegicus 81 Gapvd1 ENSRNOG00000017925 ENSRNOT00000066961 2 1 1 80 3 13767687 13771803 TCTCAACACTCACAGACGA 58 13767625 13767646 TTCGGTATTTGTCCAGAATGTC 59 NA Rattus norvegicus 81 Atp6ap2 ENSRNOG00000003858 ENSRNOT00000005138 2 1 1 80 X 11157762 11157782 GGAAATTGGCCTATACCAGGA 60 11156490 11157721 AGACAGGTCTTCCTTCACAG 59 NA Rattus norvegicus 81 Atp6ap2 ENSRNOG00000003858 ENSRNOT00000005138 3 1 1 80 X 11156493 11157723 CTCTGTGAAGGAAGACCTG 57 11156431 11156449 GTCACCATAATGGTAGCCC 58 NA Rattus norvegicus 81 Ociad1 ENSRNOG00000002205 ENSRNOT00000002996 2 1 1 80 14 37468166 37470439 GGAATACTGTCAAGTCATCCA 58 37467221 37467240 CTTTCCAGCAAAGTATCCCA 58 NA Rattus norvegicus 81 Slfn2 ENSRNOG00000037113 ENSRNOT00000076536 2 1 2 80 10 70370600 70370618 CAAGACAACCACAGAGCTC 59 70375403 70375421 CTTTCCTTGCAGGCAACTC 60 NA DesignNoJunction Rattus norvegicus 81 Kcp ENSRNOG00000021855 ENSRNOT00000050795 3 1 1 80 4 56766343 56766361 AGTAACTGCACAGAGGACC 59 56766060 56766299 TGTCAGATCCTGACACTGG 59 NA Rattus norvegicus 81 Hmgb2l1 ENSRNOG00000033321 ENSRNOT00000046874 2 1 1 60 11 49708746 49708764 AAATGCTCCCAAGAGACCA 59 49708704 49708722 CTTTGGGCGATGTTCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Jun ENSRNOG00000026293 ENSRNOT00000011731 1 1 1 60 5 114012499 114012517 CAACATGCTCAGGGAACAG 59 114012457 114012477 ACTGTTAACGTGGTTCATGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Moxd1 ENSRNOG00000015321 ENSRNOT00000061234 1 1 1 80 1 22178195 22178213 ACAAAGGCACGACATACTG 58 22150884 22178151 TTGGCTCCACCTTTATCAC 57 NA Rattus norvegicus 81 LOC103689992 ENSRNOG00000058909 ENSRNOT00000090819,ENSRNOT00000086622 2 2 2 80 1 64089297 64089538 GCTAAAGTTGATTGGAGAGTATGG 60 64089240 64089258 TTACGAATCTTCGCCAGGG 60 NA Rattus norvegicus 81 Rev3l ENSRNOG00000000593 ENSRNOT00000057227,ENSRNOT00000077936 1 2 2 80 20 44882612 44882630 CTCCTGAAATGCTTCCCTG 58 44882671 44890506 GTTTAGTGTTACCTTTGCTCCA 59 NA Rattus norvegicus 81 Olr1091 ENSRNOG00000050907 ENSRNOT00000071081 3 1 1 60 7 15628724 15628745 CTCTACCTTCCCTCATCTTCAG 60 15628765 15628784 GAAGAGGTACATGAGCAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajc9 ENSRNOG00000006619 ENSRNOT00000009009 1 1 1 82 15 4359536 4359554 AAAGAAGCAGAGCTGAGCA 60 4359599 4359944 TTCTGTCTGCTCTGGATGAG 59 NA Rattus norvegicus 81 Usp49 ENSRNOG00000013866 ENSRNOT00000018550 1 1 1 80 9 15326903 15326922 AAATGCTAGCCAAGTTCACC 59 15322282 15326861 TTCGTCGTTTGCTGTTACAC 60 NA Rattus norvegicus 81 Ubc ENSRNOG00000057823 ENSRNOT00000085692 3 1 1 103 12 36638484 36640237 CTGACAATGCAGATCTTTGTG 58 36640302 36640320 TTGTCCTGGATCTTTGCCT 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100911564 ENSRNOG00000048623 ENSRNOT00000072812 3 1 1 80 9 16315882 16315900 GATGCTGAAATACGCACTG 57 16315944 16316518 TTGGCTTCTTCAATGACCC 58 NA Rattus norvegicus 81 Apex1 ENSRNOG00000009663 ENSRNOT00000013176,ENSRNOT00000087958 2 2 2 80 15 27850643 27850662 CTGCCACACTCAAGATATGC 59 27850705 27851136 CCTTTACCCAATCCAAGCC 59 NA Rattus norvegicus 81 Trappc11 ENSRNOG00000022482 ENSRNOT00000018969,ENSRNOT00000079466 3 2 2 80 16 47912227 47912246 CGACTTGGTTCAAGATGTGG 59 47912287 47914557 CGTAATCGGATCTGTTTGAGG 59 NA Rattus norvegicus 81 LOC100911100 ENSRNOG00000045867 ENSRNOT00000051470 2 1 1 60 5 137584102 137584122 ACTTCCTTCACCATGAGTCTG 60 137584062 137584082 CACAGAAGTAGTGGTCAACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppan ENSRNOG00000020608 ENSRNOT00000027973 2 1 1 80 8 21908099 21908118 TAAACACCATCAAGCGTTGC 60 21908161 21908360 CTTTGATGCTGTAGTGCCG 59 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000009741 ENSRNOT00000045571,ENSRNOT00000012681 1 2 2 80 5 134475651 134476342 CAGTATAATGCTAGACAAATGGGAG 60 134475595 134475616 GTCATCAAGGAGACATAGTGGA 59 NA Rattus norvegicus 81 Max ENSRNOG00000008049 ENSRNOT00000083286,ENSRNOT00000041442 1 2 3 64 6 99985704 99986940 CTTCTGGAGCAACAAGTCC 59 99985658 99985676 TAGTTGGTCTGCAGTTGGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100910863 ENSRNOG00000046807 ENSRNOT00000072782 1 1 1 60 4 1364413 1364432 GTCTTCAGGTAAGGGTTGGT 59 1364455 1364473 AGCAGTGATGATGTGGGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1492 ENSRNOG00000054729 ENSRNOT00000082795 1 1 1 60 10 60428581 60428599 TCCCATCTCCATACACCCA 60 60428539 60428557 AGCAGAGGTCAGAGAAGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cltb ENSRNOG00000017506 ENSRNOT00000023651 3 1 1 102 17 10549891 10551539 CAACAACAGGATCGCTGAC 59 10554582 10554602 CTCCTCCTTGGATTCTTTCAC 58 NA Rattus norvegicus 81 Dmrta2 ENSRNOG00000008105 ENSRNOT00000067277 2 1 1 120 5 129756605 129756623 TACGAAGTCTTTGGCTCGG 60 129757947 129757965 CAAACTTCTGCAACTTGGC 58 NA DesignNoJunction Rattus norvegicus 81 Mir101a ENSRNOG00000035599 ENSRNOT00000053722 2 1 1 60 5 120168488 120168507 CTGGCTCAGTTATCACAGTG 58 120168447 120168468 CAGTTATCACAGTACTGTACCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmprss4 ENSRNOG00000026650 ENSRNOT00000040313 1 1 1 80 8 49472827 49472845 TGAAGAGCTCATCCCAACC 59 49472556 49472784 GTGTCAGACATCTTCCCTCC 60 NA Rattus norvegicus 81 Zfp292 ENSRNOG00000031031 ENSRNOT00000035808 1 1 1 80 5 50318894 50318913 GTTAAAGCTCGACCATACCT 57 50318653 50318852 TTCAACACAGCTTAATGCCA 58 NA Rattus norvegicus 81 Dhx58 ENSRNOG00000018247 ENSRNOT00000024718 2 1 1 80 10 88601071 88602478 GACTTCTCGGTCTACTATACCA 58 88601012 88601030 GATTCCTCCAGGTTTCCAG 58 NA Rattus norvegicus 81 Pdcd2l ENSRNOG00000021119 ENSRNOT00000028674 3 1 1 81 1 90053416 90057134 AACGGACAGAATCAGAGTG 57 90053353 90053371 TCTCCTCGGTATCACTTCC 58 NA Rattus norvegicus 81 RGD1559482 ENSRNOG00000048771 ENSRNOT00000085222 1 1 2 140 10 104953151 104953169 TCACAGTGACCTTGGAGAG 59 104953273 104978642 TTGAACCTGTGACTGGGAC 60 NA Rattus norvegicus 81 Cep19 ENSRNOG00000024924 ENSRNOT00000037795 1 1 1 80 11 71922834 71933123 TTTCGAAGTTCTCAGATTGCAC 60 71922775 71922794 ACACCTGTTCCAGGTAACTC 59 NA Rattus norvegicus 81 Galt ENSRNOG00000014766 ENSRNOT00000019886 2 1 1 80 5 58146765 58146784 TTTCCAGACATTACTGCTGC 59 58146827 58146946 GAGGCTAGATCATCACGCT 59 NA Rattus norvegicus 81 Olr1413 ENSRNOG00000026801 ENSRNOT00000031811 2 1 1 60 10 43894479 43894499 TCAGGAACAAGGAAGTTACAG 58 43894439 43894458 CTACTGACTCTACACCTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chmp4c ENSRNOG00000010238 ENSRNOT00000013720 2 1 1 97 2 93578087 93578105 AAGACATCACAGAGCAGCA 59 93575745 93578027 CAGAAGCTCATCCTCATCGA 59 NA Rattus norvegicus 81 Cdhr2 ENSRNOG00000017917 ENSRNOT00000024151 3 1 1 80 17 10438333 10438354 CTACATGCCAACTACTTCTCTG 59 10438146 10438293 AGGAAGTGTCTCAAAGTCCA 59 NA Rattus norvegicus 81 Sptan1 ENSRNOG00000015396 ENSRNOT00000045827,ENSRNOT00000082672,ENSRNOT00000079640,ENSRNOT00000091697,ENSRNOT00000079108 1 5 5 80 3 8565039 8565059 CCTCACTAATGTCCAGAACCT 59 8565101 8565438 CCGTCAATTCGATCCTGGT 60 NA Rattus norvegicus 81 Ccr5 ENSRNOG00000049115 ENSRNOT00000082774 1 1 2 80 8 133210537 133213191 GAAACTCTGGCTCTTGCAG 59 133213229 133213253 GTGCTGACATACTATAATCGATGTC 60 NA InUTR Rattus norvegicus 81 Hils1 ENSRNOG00000024041 ENSRNOT00000030737 3 1 1 60 10 82776068 82776086 AGGACTGTGGCTGATAAGG 59 82776110 82776128 CAGCTTTCTTCAAGGCAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dpp6 ENSRNOG00000030547 ENSRNOT00000045773 2 1 1 80 4 4025344 4025984 AACAGAGCGTATGAGATGAC 58 4025283 4025301 CGTAGCATGGATGATCAGG 58 NA Rattus norvegicus 81 Ns5atp9 ENSRNOG00000016561 ENSRNOT00000022256 1 1 1 64 8 71518979 71518997 GAAGAAGCAGGAAGCAGTG 59 71526142 71526160 TGATCAGGTTGCAAAGGAC 58 NA DesignNoJunction Rattus norvegicus 81 Gp9 ENSRNOG00000010015 ENSRNOT00000013282 2 1 1 110 4 119680604 119680622 CTCCTGTCAAGCAACACTG 59 119681461 119681480 GTAGGTATCCAGCAGATGGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Vom2r11 ENSRNOG00000033775 ENSRNOT00000047766 2 1 2 82 1 86733177 86733195 AGAAGAACCACTGCTTGCA 60 86733105 86733134 GGATATACTAGCAGGCAGAGTC 60 NA Rattus norvegicus 81 Adi1 ENSRNOG00000008950 ENSRNOT00000011951 1 1 1 80 6 47943013 47943033 CAAGGAACTACTCATGGATGG 58 47943072 47944358 AGAACATCTTGATCTTCTCCTC 57 NA Rattus norvegicus 81 Tssc4 ENSRNOG00000032677 ENSRNOT00000046669 3 1 1 228 1 216254999 216255018 GTTATTGAAGCGTGTACGGA 58 216255457 216255476 CATAAGACCTGACATCCGTC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Clip3 ENSRNOG00000020821 ENSRNOT00000028247 1 1 1 80 1 88762779 88763603 AGTGCATCAAGTGACAATGAC 59 88763643 88763663 GAGTTCTCTGATGCAATGTCC 59 NA Rattus norvegicus 81 Edil3 ENSRNOG00000033064 ENSRNOT00000064991 2 1 1 80 2 17982821 17984548 TGAAGAAATGGTCTTCCGTG 58 17984590 17984609 TACTGAGCTTTGATTGGAGG 57 NA Rattus norvegicus 81 Slc35e3 ENSRNOG00000027622 ENSRNOT00000029493 1 1 1 80 7 60770710 60772513 CTGCTTTGCTTATGGTGCT 59 60770648 60770667 ATGTGTTCCCAATGATCCAG 58 NA Rattus norvegicus 81 Olr1029 ENSRNOG00000047357 ENSRNOT00000048223 2 1 1 60 7 7753187 7753208 TCTTAAACCATCAGTCAAGCAG 59 7753148 7753169 GGTATTGAGCACAGAAATTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cct6a ENSRNOG00000000923 ENSRNOT00000001227 2 1 1 80 12 30495240 30495260 TCTGAACTCCTTTGATGACCT 59 30494924 30495202 TTCTCCTCACCCAATGTATACTC 60 NA Rattus norvegicus 81 Zcchc6 ENSRNOG00000016629 ENSRNOT00000022373 3 1 1 80 17 5233845 5234431 AACTACCAGACTGTTCTCTTAGG 59 5234466 5234489 CATCAATGTTCACATCAGAGTCTC 60 NA Rattus norvegicus 81 Rn60_X_0719.1 ENSRNOG00000051060 ENSRNOT00000076595 1 1 1 60 X 71042880 71042898 GATGCCATCTCCAAGACCT 59 71042838 71042857 TGAACACAGTCTCTTTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562608 ENSRNOG00000029466 ENSRNOT00000045150 1 1 2 80 18 17496904 17549977 ACAGGAACAGCAGATAACCA 59 17550018 17550038 GCTACACTCAGATAGGAACCA 59 NA Rattus norvegicus 81 Fbp1 ENSRNOG00000017597 ENSRNOT00000023685 1 1 1 80 17 400180 400198 ATGAGGGCTATGCTAAGGA 58 398611 400136 GGAGTGAATTATCCGGAGG 57 NA Rattus norvegicus 81 Zdhhc25 ENSRNOG00000046044 ENSRNOT00000071151 3 1 1 60 7 129595557 129595577 ATGGTATGATCTTCCATCTGC 58 129595599 129595617 AGCATAGTCCGTAGGTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zcchc8 ENSRNOG00000001243 ENSRNOT00000001668 2 1 1 80 12 38318402 38319309 AGCCAGGAGTTATTAGTGAGG 59 38319351 38319369 GCATCCGGTAGATGAAAGG 58 NA Rattus norvegicus 81 Rap1b ENSRNOG00000007048 ENSRNOT00000009511 3 1 1 82 7 60855128 60856957 GTTAAAGACACTGACGATGTCC 60 60855067 60855085 TGTTCCTTCCCGACAACTC 60 NA Rattus norvegicus 81 Rnf115 ENSRNOG00000000098 ENSRNOT00000000110 3 1 1 84 2 198888714 198892503 GATTCCAGTTTCTTAGGTGGTG 59 198908367 198908385 GATCCAGATGGTCCCAGAG 59 NA Rattus norvegicus 81 Scrg1 ENSRNOG00000013228 ENSRNOT00000017888 3 1 1 61 16 36130624 36130644 CAATTTCAGCGAATTGCTCTG 59 36127718 36127737 CAAAGGAGATCTTTGGTCCA 58 NA DesignNoJunction Rattus norvegicus 81 Rn60_10_0702.2 ENSRNOG00000021357 ENSRNOT00000055955 3 1 1 60 10 70472581 70472600 CCCGAGATGGAATAGGACAG 60 70472621 70472641 TGAGGAAGTTTCAGGATACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd83 ENSRNOG00000018092 ENSRNOT00000024458 3 1 1 93 17 24433072 24433090 CCTTCAGGAAGTACAGGGC 60 24433145 24434249 AGTCGTGCAAACTTACATGTG 60 NA Rattus norvegicus 81 Foxo4 ENSRNOG00000033316 ENSRNOT00000048521 3 1 1 84 X 71156271 71156291 GATATACGAATGGATGGTCCG 58 71156336 71159323 GATGGAGTTCTTCCATCCTG 58 NA Rattus norvegicus 81 LOC100909620 ENSRNOG00000049821 ENSRNOT00000075282 3 1 1 80 1 81556176 81556195 GTCCAACCTTGTTCTATGCC 59 81555836 81556134 AAGATACTGAGGCTACCTCC 58 NA Rattus norvegicus 81 Cntf ENSRNOG00000012460 ENSRNOT00000016690 2 1 1 76 1 229600849 229600867 ACCTGACTGCTCTTATGGA 58 229599861 229599879 ACCATCCACTGAGTCAAGG 59 NA DesignNoJunction Rattus norvegicus 81 Pwp2 ENSRNOG00000001210 ENSRNOT00000001605 3 1 1 80 20 11228959 11229798 TTCGCTTATCGGTTCTCCA 59 11229839 11229860 AACAGAATTTCCATCACGTGAG 59 NA Rattus norvegicus 81 Hyou1 ENSRNOG00000010944 ENSRNOT00000044613 2 1 1 80 8 48705710 48705987 GATCTTCGGGTATTTGGCTC 59 48706025 48706048 GTCAGGATATTTCTTGAAGCTCTC 59 NA Rattus norvegicus 81 LOC103689982 ENSRNOG00000052600 ENSRNOT00000090873 2 1 1 80 1 64041346 64045107 TCCTACGTATTGAGGAGTGC 59 64045148 64045168 GAAGCTTAGGTAGTAGCCAGG 60 NA Rattus norvegicus 81 Hes2 ENSRNOG00000010490 ENSRNOT00000014035 3 1 1 81 5 169338707 169338726 ACATCCTGGAAATGACTGTG 58 169338770 169338868 CTATCCAAAGACCCAGGTG 57 NA Rattus norvegicus 81 B3galt2 ENSRNOG00000003251 ENSRNOT00000004342 2 1 1 150 13 60436532 60441102 GAAAGAAAGAATGACGTCGAGG 60 60441213 60441231 CTTCTCCTCCACTGAAGCA 59 NA InUTR Rattus norvegicus 81 Mir3582 ENSRNOG00000035651 ENSRNOT00000053774 1 1 1 60 18 2052505 2052525 GGGACCAAATCCATTGAAGAG 59 2052546 2052565 GCAATGCTTTGCTAAAGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ebf4 ENSRNOG00000007408 ENSRNOT00000028816 3 1 1 80 3 122881155 122881174 AGTAGAAGTGACCCTCTCCT 59 122881216 122882622 TCATTCAGGGCTGTGTAGAC 60 NA Rattus norvegicus 81 Mcoln3 ENSRNOG00000015024 ENSRNOT00000020230 2 1 1 80 2 251990990 251991008 AAGCTCAAAGCCATCAACC 59 251991046 251994644 GAATGTTATAGTCAGGGTAAAGTCG 60 NA Rattus norvegicus 81 Giot1 ENSRNOG00000051563 ENSRNOT00000080491 3 1 1 84 7 13108652 13108671 CTTTGCTGAATCCTTCCCAG 59 13108381 13108610 CATTTGTAGCCTATAGCAATGAGG 60 NA Rattus norvegicus 81 Nlgn3 ENSRNOG00000003812 ENSRNOT00000005077 3 1 1 80 X 71202740 71202758 CGCCACTTATATCCAGGAG 57 71202800 71203454 GAAATCCGCTTTACATCTTCC 58 NA Rattus norvegicus 81 Olr1558 ENSRNOG00000047976 ENSRNOT00000048343 1 1 1 60 11 43687492 43687511 AGTACCACACCATGATGTCC 60 43687533 43687552 GCTATGAATATGCCCATGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Brd4 ENSRNOG00000006770 ENSRNOT00000008963,ENSRNOT00000091368 1 2 2 81 7 14255952 14255973 CAAGACACTATGGAAACACCAG 59 14252619 14255913 ATAGTAATCAGGGAGGTTCAGC 60 NA Rattus norvegicus 81 C3ar1 ENSRNOG00000009211 ENSRNOT00000012216 3 1 1 80 4 155685929 155690765 TCAGTGCTCTTGACTGAGC 60 155685867 155685886 GTTTAAACAGAGGCCGTGAG 59 NA InUTR Rattus norvegicus 81 Fcgbpl1 ENSRNOG00000042899 ENSRNOT00000057120 2 1 1 80 1 85075564 85075583 GACCAAGATGATCACCATCG 59 85075626 85077957 ACAGCGTTCACCTTAACCT 59 NA Rattus norvegicus 81 Irf2bpl ENSRNOG00000011026 ENSRNOT00000014645 1 1 1 60 6 110902988 110903007 TACCAGGATTGCATGAAGGA 59 110902947 110902966 ACTCCAGGTATTTGAAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhl22 ENSRNOG00000001878 ENSRNOT00000068711,ENSRNOT00000091675 3 2 2 80 11 87693880 87693902 TATACACTTCTGAGCTAGAGCTG 59 87693940 87698488 TTTCTGGTATCTGAAGTTGGC 58 NA Rattus norvegicus 81 Rn60_1_0437.1 ENSRNOG00000055098 ENSRNOT00000088838 1 1 1 60 1 43662213 43662232 AGCATCTTCCTCATTCTCAG 57 43662255 43662273 GACACCACCTGTTAAACCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp629 ENSRNOG00000018877 ENSRNOT00000024969 3 1 3 65 1 198899329 198899347 CTAGATCCGCAGGAGTACC 59 198895810 198895828 ATTCTTCTGCCTGGTCCTG 59 NA DesignNoJunction Rattus norvegicus 81 LOC689986 ENSRNOG00000047876 ENSRNOT00000002824,ENSRNOT00000080452 1 2 2 80 14 3251054 3251435 GATTCATCAGAGATCCCTGG 57 3250993 3251012 GTGCACATAAGATCAACAGC 58 NA Rattus norvegicus 81 Vwa1 ENSRNOG00000018338 ENSRNOT00000024897 3 1 1 80 5 173220150 173220169 AGAAGCACCTACACTTTGTG 58 173218466 173220107 GCATCGCATCAATAATGGC 58 NA Rattus norvegicus 81 Dnaja3 ENSRNOG00000003855 ENSRNOT00000085230,ENSRNOT00000081596,ENSRNOT00000005479 3 3 3 80 10 11068131 11071197 TTGTCACATTCAGGGTGCA 60 11068069 11068093 CTATTGAAATAAAGAGGTCGGAGTG 60 NA Rattus norvegicus 81 Ppp1r3a ENSRNOG00000059350 ENSRNOT00000085596 2 1 1 80 4 41180012 41180128 AAGTTCACAGAGTCCTACATCC 60 41179953 41179974 TACATGTTGATAATTGGCTCCC 59 NA Rattus norvegicus 81 Pcnxl2 ENSRNOG00000028580 ENSRNOT00000030077 2 1 1 80 19 58657702 58667998 GGATGAAGGATTCAGTGAAGG 59 58657642 58657660 TGACTGCAAAGGAGAGGAC 59 NA Rattus norvegicus 81 Tgfbr1 ENSRNOG00000007036 ENSRNOT00000009452,ENSRNOT00000081090 3 2 2 80 5 63097217 63097235 GCCCTTTCATTTCAGAGGG 59 63097278 63099993 GTGGTAAACCTGATCCAGAC 58 NA Rattus norvegicus 81 Rpl8 ENSRNOG00000048456 ENSRNOT00000075451 3 1 1 80 7 118508939 118509106 TGCCATGAATCCTGTGGAG 60 118509149 118509168 GCATCTCTTCGGATAGTGGA 59 NA Rattus norvegicus 81 Rilpl1 ENSRNOG00000001055 ENSRNOT00000001401,ENSRNOT00000090831 1 2 2 80 12 37518090 37518110 TGAGAGGAATGAGCTTAAGTC 57 37518150 37519658 TCCTCTTCTATTTCTTCGCTC 57 NA Rattus norvegicus 81 Pla2g4a ENSRNOG00000002657 ENSRNOT00000090693,ENSRNOT00000003630 1 2 2 80 13 67143104 67165134 CGATATGCTGGACACTCCT 59 67143042 67143060 AAGTGTCTTGTTCGCTTCC 58 NA Rattus norvegicus 81 Prr5 ENSRNOG00000012475 ENSRNOT00000016679 1 1 1 80 7 125607057 125607075 TAGTGTCACCATACCTGGG 58 125607118 125608385 ACCGTTTCTCAAGGATACAG 57 NA Rattus norvegicus 81 Ypel1 ENSRNOG00000001858 ENSRNOT00000002539,ENSRNOT00000085475 3 2 2 85 11 88173968 88176586 GGTGGAAATATGAACATGCC 57 88173902 88173920 ATCTTTGATCATGTGGGCA 57 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000089182,ENSRNOT00000090791,ENSRNOT00000080590,ENSRNOT00000060327 2 4 7 74 20 4087728 4087746 TGTTGCTAACAGTGCTGAG 58 4091614 4091632 GTATCTGACCAGAAGCCGT 59 NA DesignNoJunction Rattus norvegicus 81 Adgrg3 ENSRNOG00000014896 ENSRNOT00000020062 3 1 1 80 19 10417363 10417382 GCTCAGTGTTTCACCAAGTG 60 10403784 10417323 ATAGTTCAGCCAGTATCTCTGC 60 NA Rattus norvegicus 81 RGD1310166 ENSRNOG00000003143 ENSRNOT00000004193 3 1 1 83 10 72486284 72488132 TAAGCCACTAGAGAAGGTGG 59 72488178 72488196 TGACGGACCAGAACATCTC 59 NA Rattus norvegicus 81 RGD1559489 ENSRNOG00000038174 ENSRNOT00000031284 1 1 1 98 7 65720075 65720093 ATTACATCTCCAGAGGCCG 59 65720155 65720235 GCTGATGATTCTGGTGCAG 59 NA Rattus norvegicus 81 Rpl39 ENSRNOG00000050393 ENSRNOT00000051137 1 1 1 60 7 36290251 36290271 TTCAGAATCAAGCGATTCCTG 59 36290292 36290311 TCCATTGAGGAATAGGACGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tgfbi ENSRNOG00000012216 ENSRNOT00000016390 2 1 1 80 17 8407529 8407547 TTGTACTCCGGACAGACAC 59 8406840 8407487 TTCAATGCAGAGGCTATTTCG 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000088389,ENSRNOT00000086685,ENSRNOT00000090697,ENSRNOT00000082455,ENSRNOT00000084099,ENSRNOT00000083308,ENSRNOT00000088253,ENSRNOT00000045144,ENSRNOT00000051837 2 9 18 60 1 43508712 43508731 CAGAACACTAGGGAACATCC 58 43508753 43527500 CTAGCTGGTGGTTAGTTCGA 59 NA DesignNoJunction Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000085873 3 1 18 113 1 43508754 43510392 CGAACTAACCACCAGAGCA 60 43510467 43510487 AAGCTTTCCTATGCTCTTCCT 59 NA Rattus norvegicus 81 Polh ENSRNOG00000019195 ENSRNOT00000026049 3 1 1 80 9 17166722 17167366 AGGTGGTGGAATTATTGCAG 58 17167408 17167427 TTCTTAGCATCATCAGCCCA 59 NA Rattus norvegicus 81 Mad2l1bp ENSRNOG00000019463 ENSRNOT00000026331 2 1 1 89 9 17217128 17217146 TACTAAGCTGGCAGTCACG 60 17217197 17217597 TCAGTCCAATCCAAATTTGGG 59 NA InUTR Rattus norvegicus 81 Tgfbr2 ENSRNOG00000013265 ENSRNOT00000037883 3 1 1 80 8 124327924 124327943 GGATGTCTACTCCATGGCTC 60 124315569 124327885 GGCTCATAATCTTTCACTTCTCC 59 NA Rattus norvegicus 81 Runx3 ENSRNOG00000054217 ENSRNOT00000086650 1 1 1 60 5 153526878 153530612 AATCCAAGGCTCCTCAGAC 59 153530636 153530654 GAAGGAGCGATCAAACTGG 59 NA DesignRelaxed Rattus norvegicus 81 Krtap24-1 ENSRNOG00000048374 ENSRNOT00000071034 3 1 1 60 11 28583316 28583336 CTACCAACATCAGATGCAGAC 59 28583276 28583295 GATACATACCCTTTGGTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdo1 ENSRNOG00000000158 ENSRNOT00000000172 2 1 1 80 18 40712101 40712120 TTGTGGATCAAGGAAATGGG 58 40709486 40712059 TGTGATCGTGAATACTGCTG 58 NA Rattus norvegicus 81 LOC100363384 ENSRNOG00000001566 ENSRNOT00000002131 2 1 1 60 11 28870118 28870136 ACTACTATGGTGGCCTTGG 59 28870076 28870094 CCATAGCCATAGCCCAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pyy ENSRNOG00000020877 ENSRNOT00000028323 2 1 1 164 10 90048645 90049057 GAGCTGTAGCTGCTATGGT 59 90048499 90048517 AAGCATAGTAGCGGCTCAG 60 NA InUTR Rattus norvegicus 81 1190003K10Rik ENSRNOG00000050209 ENSRNOT00000072220 1 1 1 80 17 1994258 1999464 GCTCTGAGAAAGCTCAGAG 58 1994196 1994217 TTCCTTGTCATCAGGATTATCC 58 NA Rattus norvegicus 81 Anapc10 ENSRNOG00000018296 ENSRNOT00000024689 1 1 1 80 19 31816750 31853235 TTCAAGAAATCCGGCAACTC 59 31816689 31816709 TTGGCTTCTTATGGTTGTCAG 59 NA Rattus norvegicus 81 Anapc10 ENSRNOG00000018296 ENSRNOT00000024689 3 1 1 81 19 31862113 31866345 CAAACCAGGGTTTGGAGTG 59 31862050 31862068 TAAATGAGGCTGAGAGCCA 58 NA Rattus norvegicus 81 Tbca ENSRNOG00000016100 ENSRNOT00000021543 2 1 1 60 7 144503771 144503789 AAGGACTTGGAAGAAGCTG 57 144503813 144503831 ACTTCACAGAATCCAGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arsa ENSRNOG00000012953 ENSRNOT00000017783 1 1 1 86 7 130450115 130450243 TATTCCCATGACCAGGGTC 59 130450047 130450065 AACTAGGCCTTGGTCACAG 59 NA Rattus norvegicus 81 Slc44a4 ENSRNOG00000000878 ENSRNOT00000001174 3 1 1 80 20 4606980 4607093 CACAAGCTAAGAGGATCCCA 59 4607135 4607154 CTTCTCCAGACACCAGAGAC 60 NA Rattus norvegicus 81 LOC100911171 ENSRNOG00000025516 ENSRNOT00000042522 2 1 1 80 7 106650202 106653414 CACTTCACAGAAGCTGCTC 59 106650140 106650158 TACTGACCATGAGCAGCAC 60 NA Rattus norvegicus 81 Cxxc5 ENSRNOG00000032878 ENSRNOT00000085120,ENSRNOT00000045795 1 2 2 80 18 28654630 28654651 GCCATCAGATTTGCAAATTCAG 59 28654692 28655901 ACGGAAGCATCACCTTCTC 60 NA Rattus norvegicus 81 AABR07065814.1 ENSRNOG00000042305 ENSRNOT00000065808 1 1 2 60 6 142418779 142418798 GGTAGAGCTTGTTGAGTCTG 58 142418738 142418756 CGAGAGTTTCAATGACCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc38a6 ENSRNOG00000022622 ENSRNOT00000029328 3 1 1 80 6 96194125 96194143 TTCGCCTTTGGATTACCTG 58 96198195 96209283 AAGGTAAGATGACATAGCTCCA 59 NA Rattus norvegicus 81 Taz ENSRNOG00000053023 ENSRNOT00000089778 3 1 1 81 X 156423114 156427334 TATGTCGAGGAGATGGTGTC 59 156423052 156423070 AAGATGTGTACCCAGTCCC 59 NA Rattus norvegicus 81 Rpl27a ENSRNOG00000014214 ENSRNOT00000019247 3 1 1 102 1 174134114 174134132 ATTATGGACGTTGGTCAGC 58 174134196 174135120 AACTTTGTAGTAGCCTGATCG 58 NA Rattus norvegicus 81 Lhx9 ENSRNOG00000010357 ENSRNOT00000014218 3 1 1 94 13 55870439 55870457 TGCTGTGAATGTAAGCTGG 58 55869176 55870385 GAGAACCTTCTGTAGTAATCCTC 58 NA Rattus norvegicus 81 Mars2 ENSRNOG00000050002 ENSRNOT00000075508 2 1 1 60 9 64436219 64436239 ACTACGCACTTGTAAATGCAG 59 64436259 64436279 TCGTTATAATAGCCCGCTACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctsr ENSRNOG00000017888 ENSRNOT00000024115 3 1 1 80 17 3886910 3886929 TTTGATCCCAGTTTGGATGC 59 3886969 3887259 ATGTCCTTCTTCCTCCATAGTG 59 NA Rattus norvegicus 81 RGD1309104 ENSRNOG00000028236 ENSRNOT00000059807 3 1 1 89 13 69384911 69384929 GCCAAGCATGTTGCTACTG 60 69355961 69384860 CCTATACTCATCGCCAAACAC 59 NA Rattus norvegicus 81 Sostdc1 ENSRNOG00000005770 ENSRNOT00000008106 3 1 1 81 6 55813025 55813044 AACAGCACCTTGAATCAAGC 60 55813085 55815663 CCACTTGAACTCGACTATTTCG 60 NA Rattus norvegicus 81 Ccdc146 ENSRNOG00000012932 ENSRNOT00000017374 2 1 1 80 4 10372995 10374007 GCTGAAAGAGGGATCTTGG 58 10374048 10374069 CTTACGAGAAAGTTCATCATGG 57 NA Rattus norvegicus 81 Smco1 ENSRNOG00000024960 ENSRNOT00000029572 1 1 1 60 11 71757641 71757661 GAAACCACAACCCTGATATCC 59 71756192 71757621 CTTGGAGCTTGTTGTCTACTC 59 NA DesignNoJunction Rattus norvegicus 81 Tesb ENSRNOG00000039398 ENSRNOT00000079194 1 1 1 80 20 4206254 4206274 CAACTGGTGTTTCTGTAGGAG 59 4207431 4209310 CTTGGAATAGAGCAGGATTGG 59 NA Rattus norvegicus 81 Sh3glb1 ENSRNOG00000012957 ENSRNOT00000084337,ENSRNOT00000017770 3 2 2 81 2 250733892 250736670 CAGCCAAATCCAAATGCCA 59 250733829 250733850 CTGGGTTGTTTATACGACTTGG 59 NA Rattus norvegicus 81 Prdm14 ENSRNOG00000021792 ENSRNOT00000034525 2 1 1 82 5 5715491 5718129 CCCTACCTGTGTTCAACGT 60 5718175 5718193 CTGTCTCCAGAGTGGACTC 59 NA Rattus norvegicus 81 Syngr3 ENSRNOG00000012620 ENSRNOT00000017833 3 1 1 60 10 14053557 14053575 TACTGGATCTGGGCTTCTC 58 14052975 14052993 AGGAAACAGAAGCCTACGA 58 NA DesignNoJunction Rattus norvegicus 81 Hsf1 ENSRNOG00000021732 ENSRNOT00000050108 2 1 1 81 7 117560377 117560768 GCTCAACATGTATGGCTTCC 59 117560812 117560830 GAACTCGGTGTCATCCCTC 60 NA Rattus norvegicus 81 Mrps18a ENSRNOG00000019511 ENSRNOT00000026499 1 1 1 80 9 17241466 17241485 TCTGTTCCCAAATCACAGAC 58 17238717 17241424 CGAGTCAGATAGCGATTGAG 58 NA Rattus norvegicus 81 Mir455 ENSRNOG00000036266 ENSRNOT00000054389 3 1 1 60 5 79097224 79097242 CCTTTGGACTACATCGTGG 58 79097265 79097284 TTGAGGCAAGTGTATATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppap2c ENSRNOG00000000177 ENSRNOT00000000193 2 1 1 81 7 13065269 13065403 CTACTGTCGTCCTTGTCTC 57 13065447 13065466 TAGTTGTTGAAGTCAGAGCG 58 NA Rattus norvegicus 81 Rax ENSRNOG00000016944 ENSRNOT00000022784 1 1 1 73 18 61641265 61641283 TTAACCTACCCGAGGTTCG 59 61638787 61638805 TAGTTTCTCCTGGCGTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Cct7 ENSRNOG00000015630 ENSRNOT00000021030 1 1 1 80 4 117250846 117250865 GAGCAGTTTATGGAGGAGAC 58 117250907 117251330 CACAGAGTCGTTCTTGATGG 59 NA Rattus norvegicus 81 LOC690422 ENSRNOG00000005153 ENSRNOT00000029223 3 1 1 80 6 137967705 137969608 CTGACAGGTTATTGGCTCCA 60 137969651 137969669 CGGTCCAGGTATTGTTTGC 59 NA Rattus norvegicus 81 Slc35b4 ENSRNOG00000008851 ENSRNOT00000012179 3 1 1 80 4 61556968 61558172 CATGGTGGTTACTAGGTATTGG 58 61556909 61556929 ACAGAGTCTCTTGGAATATGC 58 NA Rattus norvegicus 81 Cux2 ENSRNOG00000001259 ENSRNOT00000001697 3 1 1 83 12 40201977 40201995 GAGCTGGAAGAGGTCTCAG 59 40202040 40202139 TTGGAGTTTCTCTATGGCCTC 60 NA Rattus norvegicus 81 Slc23a2 ENSRNOG00000021262 ENSRNOT00000028885 1 1 1 80 3 124657378 124668374 ATTTGGATGCAGGTTACCC 58 124657316 124657337 TTATCTAAAGACAGGATGGCTC 58 NA Rattus norvegicus 81 Slc23a2 ENSRNOG00000021262 ENSRNOT00000028885 2 1 1 80 3 124657378 124668375 CATTTGGATGCAGGTTACCC 59 124657317 124657338 TATCTAAAGACAGGATGGCTCG 60 NA Rattus norvegicus 81 Ncf2 ENSRNOG00000028016 ENSRNOT00000066331,ENSRNOT00000088724,ENSRNOT00000088649,ENSRNOT00000090174 3 4 4 80 13 70247251 70249688 AGATCTTCAGGGCTCTGGA 60 70249732 70249750 TGACCTGTAGTTCTTCCGG 59 NA Rattus norvegicus 81 Wdr60 ENSRNOG00000004520 ENSRNOT00000087845,ENSRNOT00000006144 3 2 2 80 6 144110352 144111594 AAGGGAGTCAAAGGAACCTG 60 144110291 144110313 TCTTCTAAGTTGGGCAGATACTC 60 NA Rattus norvegicus 81 U8 ENSRNOG00000056054 ENSRNOT00000083120 2 1 1 60 10 55656479 55656498 TCTGCTGATTAGCATTTCCG 59 55656520 55656539 TCAGATAGGAGCAATCAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stx18 ENSRNOG00000006139 ENSRNOT00000008410 3 1 1 80 14 77428719 77440806 TACATTAATGCCTACAGCCAC 58 77428659 77428677 AGCATCCTGGTCTATCTGG 58 NA Rattus norvegicus 81 Rps25-ps2 ENSRNOG00000051314 ENSRNOT00000076376 1 1 1 60 20 5078521 5078543 AGCTACTTGGTAAAGGACTTAGG 60 5078561 5078581 GTATCAACTACTTGGGCTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hsbp1l1 ENSRNOG00000059055 ENSRNOT00000078797 3 1 1 60 18 76750701 76752493 CCTCAGAATGGAAGAAATGGG 59 76750661 76750681 TAGGTCATCCACATTTCTCTG 57 NA DesignRelaxed Rattus norvegicus 81 Aaas ENSRNOG00000013445 ENSRNOT00000018809 1 1 1 80 7 143938602 143938623 CGATTGTTGTTCACTGTATTGG 58 143938416 143938562 ATGTCCTTTCTCTGTTCCAC 58 NA Rattus norvegicus 81 RT1-A2 ENSRNOG00000030712 ENSRNOT00000038660 1 1 1 80 20 5377256 5377368 CAGAGATGGGAGCCTTCTC 59 5377412 5377430 TCCAATGATGGCTCCAAGG 60 NA Rattus norvegicus 81 Naa50 ENSRNOG00000039017 ENSRNOT00000068345 1 1 1 80 11 61512199 61513917 CAACATCTATCTGCATGTCCA 58 61512139 61512159 GTCTCGATAATCTCAAAGCCA 58 NA Rattus norvegicus 81 Trim67 ENSRNOG00000019024 ENSRNOT00000032359 3 1 1 81 19 57580373 57581656 AAGCTGAAGATGGTTTGGGA 60 57581700 57581718 CCAGGCAGTACTCCATCAG 60 NA Rattus norvegicus 81 RGD1563861 ENSRNOG00000056765 ENSRNOT00000083951 1 1 1 80 X 156439211 156439397 CTCTTCTGAAGCACTGGAG 58 156439149 156439168 ATATGAAAGCCATCCTTGCC 58 NA Rattus norvegicus 81 LOC364561 ENSRNOG00000020474 ENSRNOT00000027818 3 1 1 87 8 21679187 21679206 TTGAATCTCTGGCCTCACAG 60 21679256 21680097 TTCTGCATCTGACCTCTGC 60 NA Rattus norvegicus 81 Lrp6 ENSRNOG00000006338 ENSRNOT00000066575,ENSRNOT00000082102 3 2 2 80 4 168275984 168296987 TCAAGTGGGTTCATGTACTG 58 168275923 168275941 AAAGCGACTTGAACCATCC 59 NA Rattus norvegicus 81 Rn60_1_1144.1 ENSRNOG00000028324 ENSRNOT00000030707 1 1 1 60 1 113346877 113346897 CGAACATTGGGACTGATATGG 59 113346837 113346856 ACTATGGCGTCCTTCTTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apobec4 ENSRNOG00000028089 ENSRNOT00000036906 3 1 1 80 13 70157674 70164334 GAGACAAAGCTGATCTGCA 58 70164376 70164396 TCCACTGTGGGTTAGATACTC 59 NA InUTR Rattus norvegicus 81 AABR07042384.1 ENSRNOG00000056271 ENSRNOT00000089929 3 1 1 97 X 154548299 154548470 AGGTCAAGGTAACTAAGAAACC 58 154548527 154548546 CTTAACCAAGGGTGTCTGAG 58 NA Rattus norvegicus 81 Tmem41a ENSRNOG00000046283 ENSRNOT00000074826 1 1 1 80 11 82738458 82738477 ACTGGTTCTTGAACCTCTCG 60 82738518 82740400 GGATCAAACCGATAAGCACTG 60 NA Rattus norvegicus 81 Oxnad1 ENSRNOG00000019760 ENSRNOT00000026751,ENSRNOT00000079609 3 2 2 80 16 8215857 8215875 CCATCAGTGAAGAGCCTCC 60 8215916 8217078 GATGAAGAAATCAACCCACTGG 60 NA Rattus norvegicus 81 LOC100912136 ENSRNOG00000045971 ENSRNOT00000071683 2 1 1 60 8 41253299 41253318 ACATTCTTGGTTTCCATGCT 58 41253340 41253359 TCTTGACATCCTTGTTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360635 ENSRNOG00000016507 ENSRNOT00000022367 2 1 1 118 4 118172504 118172523 TGTACAAGGAATACTGCGGG 60 118172604 118174692 TGTTTCCTCGGATGACCAC 60 NA Rattus norvegicus 81 Mt1 ENSRNOG00000025764 ENSRNOT00000038212 2 1 1 80 19 11302282 11302300 CAAGAAGCAGGTCTTCTGC 59 11302219 11302243 GGAAAGAAAGAAGAGGAAGATGTC 60 NA Rattus norvegicus 81 LOC297756 ENSRNOG00000007238 ENSRNOT00000009490 2 1 1 82 5 2799687 2803301 GCAGATGGCTACTGTTGTG 59 2799623 2799641 GACATGAGGTTGACCTCCA 59 NA Rattus norvegicus 81 Rn60_8_0909.1 ENSRNOG00000042208 ENSRNOT00000064498 3 1 1 60 8 91296656 91296675 GTTTGTTAGCAGATGCTCGT 59 91296615 91296636 CTAAAGTTGGACGCTTCTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mpst ENSRNOG00000000185 ENSRNOT00000000201 1 1 1 122 7 119627168 119627186 TCCTGGAGAACTTGGATGC 59 119630844 119630862 TTACTGAGCCAGGGATGTG 59 NA DesignNoJunction Rattus norvegicus 81 Pon3 ENSRNOG00000009096 ENSRNOT00000012050 3 1 1 80 4 30325518 30325536 CTGGAAATCAGTGATGGGT 57 30321422 30325474 CACAGTGTTGTCTTTGTCG 57 NA Rattus norvegicus 81 Gsta4 ENSRNOG00000030449 ENSRNOT00000090146,ENSRNOT00000012348 2 2 2 80 8 85503241 85503260 GCTCTACTACTTTCAAGGCA 57 85503302 85504614 TCTTCTTCAAACTCCACTCC 57 NA Rattus norvegicus 81 Rhoh ENSRNOG00000002540 ENSRNOT00000003425 1 1 1 80 14 43992390 43992408 AGCTACTTAGACTTCCGGA 57 43963417 43992346 TCAGTCACTTTGGGAACTG 57 NA InUTR Rattus norvegicus 81 AABR07034532.1 ENSRNOG00000001713 ENSRNOT00000002330 2 1 1 60 11 74865425 74865443 GATGACAACGACCTGTGGA 60 74865383 74865405 AATTCGGCTCCTTACCTATACTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcm4 ENSRNOG00000001833 ENSRNOT00000002510 3 1 1 80 11 89514170 89514191 AACATCAGATTCAAGTCAGACC 59 89514231 89516384 GCTGATCAATGTCTTCTGGA 58 NA Rattus norvegicus 81 Dnajc8 ENSRNOG00000013255 ENSRNOT00000089852,ENSRNOT00000017740 1 2 2 80 5 150740317 150741337 AAAGAAATGCATGAGAGGAAGC 60 150741378 150741396 CTGCCATTCTCTTTCTCGC 59 NA Rattus norvegicus 81 LOC100365839 ENSRNOG00000048109 ENSRNOT00000074617 3 1 1 60 11 79548109 79548127 GACCGATGGGTATTTGCTC 58 79548148 79548169 CTGGTTGTTACGTTTCTTAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100359825 ENSRNOG00000033058 ENSRNOT00000043587 1 1 1 60 6 95826643 95826663 TTTATGCCCGAGATGAAACTG 59 95826683 95826703 GCTTTGTACACATAAGCACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Papd4 ENSRNOG00000012099 ENSRNOT00000016135 3 1 1 80 2 22778609 22781088 CACTTCTGTACTAGACTTTCTGG 58 22778551 22778571 ATCCCTGAACTTCACAATTGG 59 NA Rattus norvegicus 81 Tmed2 ENSRNOG00000001053 ENSRNOT00000001397 3 1 1 80 12 37472677 37474851 GAATACACAGAGCCATCAATGAC 60 37472619 37472637 TGGCAACAAGAACAAGAGC 59 NA Rattus norvegicus 81 Coch ENSRNOG00000005286 ENSRNOT00000007365 1 1 1 80 6 72364668 72364766 TGGCAATAAAGACTGCAAGG 59 72364809 72364827 TGCAAATTAAATCGGCGCT 59 NA Rattus norvegicus 81 Recql4 ENSRNOG00000032446 ENSRNOT00000045135 2 1 1 80 7 117768773 117768791 ATTGATGAGGTCCACTGCC 60 117768632 117768733 CTCCCGAAGTACTTTACAAACAC 60 NA Rattus norvegicus 81 Zfp386 ENSRNOG00000004268 ENSRNOT00000091884,ENSRNOT00000005648 2 2 2 94 6 143909939 143914274 GTCTCTGTGGCTCTTTCTC 58 143914330 143914350 CCACAACTTCCATTAGTTCCT 58 NA Rattus norvegicus 81 Atp6ap1 ENSRNOG00000054352 ENSRNOT00000081914 2 1 1 80 X 156414533 156414554 GCTTTCTACCTACTTAGACCCT 59 156412471 156414493 TCAATGCTTAGCTTGTCCTG 58 NA Rattus norvegicus 81 Nup98 ENSRNOG00000020347 ENSRNOT00000027575,ENSRNOT00000027590 3 2 2 80 1 167286529 167286548 TAGCACTAACATCAGCACCA 59 167285861 167286488 AAACGAAGCTCCTCTAATGAC 58 NA Rattus norvegicus 81 Stoml2 ENSRNOG00000009535 ENSRNOT00000013151 3 1 1 80 5 58474891 58475000 TCCTTACAAGGCAAGTTATGGT 60 58474832 58474852 AGCTCTGATCTCATAGTCGTC 59 NA Rattus norvegicus 81 Iqca1 ENSRNOG00000019592 ENSRNOT00000026491,ENSRNOT00000056724 2 2 2 80 9 97251723 97251746 AGAATACCCTAATGAGGAAGAAGG 60 97245668 97251687 ATGATATCCTCGATAACCTGCT 59 NA Rattus norvegicus 81 Rdh10 ENSRNOG00000006681 ENSRNOT00000009096 2 1 1 80 5 2605404 2605509 GACATTCATGAAGAGCATCCT 58 2605344 2605363 GGGTACATACACTTGTCTGC 58 NA Rattus norvegicus 81 Myl9 ENSRNOG00000020246 ENSRNOT00000027445 2 1 1 109 3 152862797 152862818 CCATGTTCCTCACTATGTTTGG 59 152862888 152863330 CTCGTGGATGAACCCTGAG 60 NA Rattus norvegicus 81 Myl9 ENSRNOG00000020246 ENSRNOT00000027445 3 1 1 117 3 152862789 152862809 CAACTTCACCATGTTCCTCAC 60 152862888 152863330 CTCGTGGATGAACCCTGAG 60 NA Rattus norvegicus 81 Tex38 ENSRNOG00000010162 ENSRNOT00000013480 1 1 1 81 5 134637528 134637927 TCTCTGGCATGTGGATCTC 59 134637465 134637484 TGCAGAAAGATTATGCAGCT 58 NA Rattus norvegicus 81 Fam179b ENSRNOG00000004415 ENSRNOT00000059271,ENSRNOT00000005861 2 2 2 80 6 86748172 86755690 CATCTGAGAATGAACCATCTCC 59 86755728 86755749 TTATCTCTGGACTGTGAGTGAC 59 NA Rattus norvegicus 81 Fam179b ENSRNOG00000004415 ENSRNOT00000059271,ENSRNOT00000005861 3 2 2 80 6 86748173 86755690 ATCTGAGAATGAACCATCTCC 57 86755730 86755750 ATTATCTCTGGACTGTGAGTG 57 NA Rattus norvegicus 81 Os9 ENSRNOG00000025570 ENSRNOT00000049895 1 1 1 80 7 70382761 70382904 TCCAGGAGACAGAGAAGGA 59 70382699 70382718 ATGTCAGAGCCAATATTGCC 58 NA Rattus norvegicus 81 AABR07069352.1 ENSRNOG00000054195 ENSRNOT00000074246 3 1 1 68 8 18095150 18095168 CTCACTTGGCAGTTGTCTG 59 18095098 18095119 GGGAAACAGTAATTGAAGAGCT 59 NA DesignNoJunction Rattus norvegicus 81 E2f5 ENSRNOG00000010760 ENSRNOT00000044847 3 1 1 80 2 88353379 88353399 AGCATGTTTCTGAAAGAAGCC 60 88351947 88353342 TGATGTCTCCACTAATAGATCCTG 59 NA Rattus norvegicus 81 Zfp2 ENSRNOG00000030750 ENSRNOT00000040346 1 1 1 80 10 36402536 36402555 TGAATTCTCTAGGAAGGCCC 59 36400463 36402493 CAGTGATTCCTGAGCTCCC 60 NA InUTR Rattus norvegicus 81 Npsr1 ENSRNOG00000015863 ENSRNOT00000021625 3 1 1 80 8 25419359 25448414 CTACTTACAGGTTGTCCTGC 58 25448455 25448475 TAAACGATGGCATGGTATCTG 58 NA Rattus norvegicus 81 Zfp146 ENSRNOG00000006796 ENSRNOT00000008889 1 1 1 60 10 74769438 74769458 TAAGCATCAGAACACTCACAC 58 74769398 74769419 GGATTTCCCACAATCATTACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1344 ENSRNOG00000033704 ENSRNOT00000046464 2 1 1 60 9 99667545 99667563 CTAGCCATCATCCTCACTG 57 99667503 99667522 GGAAGTAGTACATGGGTCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Setd8 ENSRNOG00000001062 ENSRNOT00000066253 3 1 1 82 12 37569821 37569839 ATTCTACCAGTGTAGCGGT 58 37569393 37569775 CCCTTGAGACTTCTTCCGA 59 NA Rattus norvegicus 81 Lnpep ENSRNOG00000047387 ENSRNOT00000017718 3 1 1 80 1 59329386 59330936 AGAGCTCAACAGTTATGAAGAC 58 59329327 59329348 ATTGGATGAGACGAATTCAAGG 59 NA Rattus norvegicus 81 Hmgxb4 ENSRNOG00000013878 ENSRNOT00000067519 2 1 1 80 19 14382398 14382416 AGAACAAAGCTGAAGCCAC 59 14382460 14383117 CCACAGAAGAAGCTCTGAC 58 NA Rattus norvegicus 81 Rsrp1 ENSRNOG00000017309 ENSRNOT00000023289,ENSRNOT00000082184 2 2 2 80 5 153261794 153262436 GCCTGAGTGAGAAAGATCG 58 153262478 153262498 CAAAGTTGGCTGTTCCTAGAG 59 NA Rattus norvegicus 81 Zfp329 ENSRNOG00000019376 ENSRNOT00000026204 1 1 1 87 1 65781554 65791837 CAACCTGTATATGGAACATGAGAC 59 65791880 65791901 CCTTCCATTTCTACCTCAAAGG 59 NA InUTR Rattus norvegicus 81 Rps19bp1 ENSRNOG00000017847 ENSRNOT00000024085 1 1 1 60 7 121488790 121488809 GTGAAACTACGGAACTCAGC 59 121488749 121488767 TTCCCAGCTCACCTAATGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr1 ENSRNOG00000028498 ENSRNOT00000024012 2 1 1 80 14 77004397 77004417 GAAGATCAAGGACATAGCCTG 58 77004459 77005515 ACAGCTCCAAATTTCTCCC 58 NA Rattus norvegicus 81 Lrrfip2 ENSRNOG00000021047 ENSRNOT00000056060 2 1 1 80 8 119481007 119482107 TTGGAACAAAGTATCAGCCG 59 119482149 119482168 GTCTTCAATCTTCTCAGCGT 58 NA Rattus norvegicus 81 Trim63 ENSRNOG00000016543 ENSRNOT00000067524 3 1 1 80 5 152538448 152539356 CTTCCAAGGACAGAAGACTG 58 152539397 152539417 GAGATGATAGTCTGAACTCGG 58 NA Rattus norvegicus 81 Cpa6 ENSRNOG00000005655 ENSRNOT00000007491 2 1 1 80 5 8467513 8469679 TCTTGATTATACAGCTGGGCA 59 8469720 8469739 ATTCTCTTGCATGAATGCCG 59 NA Rattus norvegicus 81 Thsd7a ENSRNOG00000030151 ENSRNOT00000052063 3 1 1 80 4 38664842 38664864 TGTCTCCATGATTTATCTAGCG 58 38664094 38664113 AAGGTTAAAGGTTTGAGGCG 59 NA Rattus norvegicus 81 Vgll3 ENSRNOG00000028774 ENSRNOT00000042316 2 1 1 100 11 3142743 3142761 ATCTGACTACAGCCACCAC 59 3142825 3164520 ATGCTGAAGACCTGTTTCG 58 NA Rattus norvegicus 81 Ctc1 ENSRNOG00000005357 ENSRNOT00000007447 3 1 1 80 10 55603321 55603342 AGATTTGGAACAAGAGTCTAGG 58 55603380 55603498 AGATCTATAAGCTCACAGTCCA 58 NA Rattus norvegicus 81 Ubxn6 ENSRNOG00000048509 ENSRNOT00000089071,ENSRNOT00000070986 2 2 2 80 9 10998333 10998354 AATATCCATTTGCATCCAGAGG 59 10998395 10999108 GCAGTTGATTCGTTCCTGG 59 NA Rattus norvegicus 81 AABR07065645.2 ENSRNOG00000047785 ENSRNOT00000070980 2 1 1 119 6 138565061 138565079 CTCTCAAATCCCGACTGAG 57 138564866 138564978 GAAGTGATCTGTGTCTGGC 58 NA Rattus norvegicus 81 Gpi ENSRNOG00000023150 ENSRNOT00000032613 3 1 1 80 1 90066882 90066903 AAGATGATACCCTGTGATTTCC 58 90065511 90066841 CAGGAGGATCTTGTGATGC 58 NA Rattus norvegicus 81 Helb ENSRNOG00000004189 ENSRNOT00000038147 2 1 1 80 7 64885553 64887182 AATGCGAGTGTCTATTCCTG 58 64885492 64885510 CACCACGGATCTTTGAGTG 59 NA Rattus norvegicus 81 Pum1 ENSRNOG00000011709 ENSRNOT00000015831 2 1 1 80 5 148879965 148881067 AACAGCAGTTGCAAACTCC 59 148881108 148881129 GTCCTCTTATAAAGGTCACTGC 59 NA Rattus norvegicus 81 Rn60_10_0873.4 ENSRNOG00000057025 ENSRNOT00000086816 1 1 1 60 10 87470307 87470325 CAAAGAGGACCGTGATCGT 60 87470265 87470283 TCGTTTCCTGTAGCCACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdca7l ENSRNOG00000005410 ENSRNOT00000064868,ENSRNOT00000088969 2 2 2 80 6 145776361 145778971 GTAACCCAGAGCTCATAGAGTC 60 145779012 145779030 CATCATCGTCCTCCTCGTC 60 NA Rattus norvegicus 81 Slc25a27 ENSRNOG00000010592 ENSRNOT00000052068 2 1 1 80 9 19886392 19886412 ATGGTCACCTACGAACATCTC 60 19886454 19890541 AATGACGGACTTCCAGAGG 59 NA Rattus norvegicus 81 Gcnt2 ENSRNOG00000023778 ENSRNOT00000060335,ENSRNOT00000078010,ENSRNOT00000035448 1 3 3 80 17 21639888 21639907 CTGGACAGGTAACCTCAGAG 59 21637131 21639846 TCATGTACGTAGTGACCGTG 60 NA Rattus norvegicus 81 RGD1566264 ENSRNOG00000036836 ENSRNOT00000051929 3 1 1 81 7 144886897 144886918 GTCAAAGAACCATACCAAACAC 58 144886726 144886857 TTCATATCTTTGTGACCCGAG 58 NA Rattus norvegicus 81 Asah1 ENSRNOG00000010034 ENSRNOT00000077188,ENSRNOT00000013463 3 2 2 80 16 54024574 54024701 AATGGTGGTTATCTGGGTATCC 60 54024736 54024760 AACTGATCTAGTGATAAACCCTACC 60 NA Rattus norvegicus 81 Best4 ENSRNOG00000018749 ENSRNOT00000025346 3 1 1 80 5 136017053 136017159 GACCGAAACTTTCAGGTGTC 59 136017201 136017220 CCAGTACAGATCCTGCTCAG 60 NA Rattus norvegicus 81 LOC100910483 ENSRNOG00000048545 ENSRNOT00000017253 1 1 1 80 9 113835286 113835304 CATGAAGCGTAAACTGCCT 59 113828856 113835242 TGTCCTGGGTCTGAATCTG 59 NA Rattus norvegicus 81 Bcas2 ENSRNOG00000018783 ENSRNOT00000025592 1 1 1 80 2 205664319 205664850 AGCATGAAGCGATATGAACTG 59 205664889 205664910 ATTGTTTACACAGTCTTGCCAC 60 NA Rattus norvegicus 81 Abhd16a ENSRNOG00000056637 ENSRNOT00000083284,ENSRNOT00000077082 2 2 3 80 20 5094135 5094153 GAGTGATGACAGAGGAGGG 59 5094193 5094291 TATAAATGGAGGCTTCCTCTAGC 60 NA Rattus norvegicus 81 Syngr1 ENSRNOG00000017108 ENSRNOT00000023066,ENSRNOT00000081377 3 2 2 94 7 121311154 121328651 TCGTGTCTTGGGTCTTCTC 59 121328708 121328727 GTAGATGCAGAACTCCTCCT 59 NA Rattus norvegicus 81 Fbxo33 ENSRNOG00000005285 ENSRNOT00000059316 3 1 1 80 6 80308537 80308555 AGCAAGGAAGTCTGTCCAG 59 80307290 80308494 CAAACAGCTGCTGAATTTGC 59 NA Rattus norvegicus 81 Nfkbia ENSRNOG00000007390 ENSRNOT00000009894 3 1 1 81 6 76268639 76268658 CCTCTATCCATGGCTACCTG 59 76268484 76268595 CCATTACAGGGCTCCTGAG 60 NA Rattus norvegicus 81 LOC100363289 ENSRNOG00000010657 ENSRNOT00000014449,ENSRNOT00000086093 3 2 2 84 8 87211944 87211966 CTCTGAATACCAGAGACATAACC 58 87212010 87213469 TTGACAATAAGCCGTGCTG 59 NA Rattus norvegicus 81 Prex2 ENSRNOG00000005391 ENSRNOT00000064774,ENSRNOT00000079917 1 2 2 80 5 7832988 7833009 GCAGGGAAATCTGATCAAAGAC 60 7830576 7832950 CATGAGACAAATTCACTTCCCA 59 NA Rattus norvegicus 81 Sv2b ENSRNOG00000011160 ENSRNOT00000076087,ENSRNOT00000015084 2 2 3 80 1 136699332 136707668 ATCATTCCACACTATGGCTG 58 136699271 136699290 ACAGACGATGACAAACACTC 58 NA Rattus norvegicus 81 Mgat3 ENSRNOG00000017434 ENSRNOT00000023434 1 1 1 82 7 121408869 121432403 CTTCACCTTGGATGAAGATGAG 59 121432446 121432464 GTGCAGGAAGGAGATGAGG 60 NA InUTR Rattus norvegicus 81 Hspa13 ENSRNOG00000060979 ENSRNOT00000081096 1 1 1 80 11 14149253 14149276 GGAACTCTTGATGTGTCATTACTG 60 14147358 14149217 TCCAAGTTTGTTGTTTCCAGAC 60 NA Rattus norvegicus 81 Tmem132a ENSRNOG00000021338 ENSRNOT00000028971 3 1 1 80 1 226914458 226914807 CACCTCTATCGAGGTTCGA 58 226914396 226914415 GAGACCTTGTCATCTGTCAC 58 NA Rattus norvegicus 81 AABR07033279.1 ENSRNOG00000050713 ENSRNOT00000009911 2 1 1 82 11 15088147 15088165 CAAGGGTCCATACAGAGGG 59 15088208 15089214 CCGCTTGCTCATTTAATTTCAG 59 NA Rattus norvegicus 81 Fgf19 ENSRNOG00000020899 ENSRNOT00000028365 2 1 1 80 1 218058931 218061400 GATATACGGGCTGATTCGCT 60 218061443 218061461 CTGTACTGGTTGTAGCCCA 59 NA Rattus norvegicus 81 Cntnap1 ENSRNOG00000020277 ENSRNOT00000027505 2 1 1 80 10 89095464 89095482 TAGAGTTTCGGAAGCTTGG 57 89095525 89095803 ACATATTAGGGCTGCATCTG 58 NA Rattus norvegicus 81 Caps2 ENSRNOG00000026600 ENSRNOT00000087341,ENSRNOT00000039141 2 2 2 80 7 54910515 54910535 TATGGAGAATTCAAACGTGCC 59 54910576 54912745 CAATTTCATGAAGGCCTTGC 58 NA Rattus norvegicus 81 Atp6v1h ENSRNOG00000030862 ENSRNOT00000085654,ENSRNOT00000065402 1 2 2 80 5 14333761 14333780 AAAGGAACTCATGGAAGGCA 60 14330903 14333720 CCACGAAGTTTCTGTGAACTC 60 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000081108,ENSRNOT00000088023 2 2 6 129 12 41229496 41229515 AAATGTGGCTGGTTCAAACC 60 41228383 41229404 GACCTTTGTCAGCACTTCC 59 NA Rattus norvegicus 81 Bcl2l14 ENSRNOG00000028632 ENSRNOT00000032229 2 1 1 80 4 168172076 168172096 GAGAGTGTCCCAAAGATTCTG 59 168172135 168175031 GTCTTCTCCATCTTTCTTCGAG 59 NA Rattus norvegicus 81 Pou3f2 ENSRNOG00000006908 ENSRNOT00000009043 2 1 1 60 5 36682279 36682299 TTGAACAAGTGGTTGGAAGAG 59 36682239 36682257 TCTTGTCTATGCTGGTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bpgm ENSRNOG00000010133 ENSRNOT00000013569 1 1 2 80 4 61924605 61939863 ATCTAGAAGGTATCTCAGACGAG 59 61939903 61939921 TCTCATCCAACTCCAGCAG 59 NA Rattus norvegicus 81 Vill ENSRNOG00000011446 ENSRNOT00000015888 1 1 1 80 8 127752272 127752290 GTCCTACGAGGAGATGGTG 59 127752331 127752530 TGGAAATTATGGACTTCTGCTG 59 NA Rattus norvegicus 81 Pak1ip1 ENSRNOG00000023799 ENSRNOT00000036195 3 1 1 85 17 21587994 21588014 AGCAAAGATGAGACCATTCAC 59 21584610 21587948 CAAGTTACTGTGCCACTGTG 60 NA Rattus norvegicus 81 Sharpin ENSRNOG00000012812 ENSRNOT00000018031 1 1 1 80 7 117414105 117414201 TCCCATAAGGCTGCAAGTC 60 117414043 117414061 ATCTGCAGTGAGACATGGG 60 NA Rattus norvegicus 81 Slc22a15 ENSRNOG00000033051 ENSRNOT00000021713 2 1 1 80 2 204298381 204300623 ACCAAAGATGGTTTGGTCG 58 204298319 204298340 GAAACATCACAATAAGACAGGC 58 NA Rattus norvegicus 81 Adam11 ENSRNOG00000002753 ENSRNOT00000064429 2 1 1 80 10 90738950 90739125 CTGGAGCTAAACCATCACC 58 90739169 90739187 AGTACTGTGTTGCCTTGTC 58 NA Rattus norvegicus 81 Spatc1 ENSRNOG00000029590 ENSRNOT00000050522 1 1 1 87 7 117342823 117349553 AGAAGATCATCCAGGCCTC 59 117349604 117349622 ATGCTCACATAACGCTGTG 59 NA Rattus norvegicus 81 Bop1 ENSRNOG00000021773 ENSRNOT00000025134 1 1 1 80 7 117515435 117515453 GGAGCTTACGAAGAAGCTG 58 117515285 117515392 CAGATGATGTTGTCACCTGC 59 NA Rattus norvegicus 81 AC139976.1 ENSRNOG00000059843 ENSRNOT00000078098 1 1 1 135 6 101868038 101873400 CCTCCATTGTTGGGTTGTG 59 101865081 101865099 AGTATGATGGGATGCCGAG 59 NA Rattus norvegicus 81 Syk ENSRNOG00000012160 ENSRNOT00000016942,ENSRNOT00000041726 3 2 2 80 17 12622987 12623005 AGTGATGTCTGGAGCTTCG 60 12621830 12622943 GCTCCCTTTCATCCCTCTG 60 NA Rattus norvegicus 81 AABR07065839.1 ENSRNOG00000050652 ENSRNOT00000073713 2 1 1 60 6 143206571 143206590 TCAGAAGTTTAAGGGCAAGG 58 143206530 143206548 CATGTAGGCTGTGTTGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pde1b ENSRNOG00000036828 ENSRNOT00000055272 3 1 1 80 7 145141549 145141681 GGATGAATTCGTAGAGCTGC 59 145141724 145141742 TTCACTTGCTGGAAATGGC 59 NA Rattus norvegicus 81 Scyl3 ENSRNOG00000025318 ENSRNOT00000003551 3 1 1 81 13 82241601 82242547 TCCTGAGGAGATGTCTCCA 59 82242591 82242610 CAAAGCTCCAAAGGCATAGG 59 NA Rattus norvegicus 81 AABR07065811.1 ENSRNOG00000042569 ENSRNOT00000064717 1 1 1 60 6 142059925 142059943 TACAGCCTGGATGAACTGG 59 142059883 142059901 TCGAGCAATCCACTCTAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr576 ENSRNOG00000047926 ENSRNOT00000071529 2 1 1 60 3 75719772 75719793 CAGGTCTAATGAGATCAACCAC 59 75719733 75719756 GCAAGATATTAACAGAAGAGGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clec5a ENSRNOG00000026306 ENSRNOT00000081884,ENSRNOT00000033265 1 2 2 80 4 68812980 68812999 TTGGTTTGATACGTCAGCCT 60 68811653 68812938 CCTGATTGGTAACATTGCCC 59 NA Rattus norvegicus 81 RT1-Db2 ENSRNOG00000030431 ENSRNOT00000042571 1 1 2 140 20 4118489 4120010 CTGTCAGAGTGGAGTGGAG 59 4120114 4124688 ACACTGATCCTGCTCTCAG 59 NA Rattus norvegicus 81 Trhde ENSRNOG00000005278 ENSRNOT00000007461 3 1 1 80 7 57341329 57341352 TTCAGAGTCAACTATGACCTAAGG 60 57341161 57341293 ACTGACAGAAAGTACCTCATGG 60 NA Rattus norvegicus 81 Dedd2 ENSRNOG00000046112 ENSRNOT00000072616 3 1 1 125 1 82074122 82081601 AAGGTGACCTGTGACATCC 59 82074015 82074033 CTGTCCAAACACATCCAGC 59 NA Rattus norvegicus 81 Hdc ENSRNOG00000010262 ENSRNOT00000086724,ENSRNOT00000041569 1 2 2 80 3 119061206 119061224 TTCGCTCCATTAAGCTGTG 58 119058774 119061162 TGTCTGTACCGTGTCTGAC 59 NA Rattus norvegicus 81 Mir1249 ENSRNOG00000041492 ENSRNOT00000063245 2 1 1 65 7 125861244 125861262 CAAGTTCCCTATGCCTGGA 59 125861197 125861216 GAAGGACGAGTAGGAGTTCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss37 ENSRNOG00000012201 ENSRNOT00000016251 2 1 1 80 4 68344807 68347473 GCTATTTACCAAATCTGAGGGT 58 68344748 68344768 TGGGATAAATTGTCTGCTCTG 58 NA Rattus norvegicus 81 Tmem102 ENSRNOG00000015057 ENSRNOT00000020578 2 1 1 86 10 56412388 56412406 AGGAGAGTTGGAGTGAAGG 58 56412219 56412340 GGTGAACTAGACCGAGTAGAG 59 NA Rattus norvegicus 81 Fbl ENSRNOG00000019229 ENSRNOT00000026021 1 1 1 80 1 85110542 85110563 AGAAGAGGACCAACATTATTCC 58 85110603 85111571 CATCCACCATTGCAATAAGC 58 NA Rattus norvegicus 81 RGD1560291 ENSRNOG00000009241 ENSRNOT00000029672 1 1 1 80 7 17504272 17505829 GTTCTGAAGTCACTATGTATGACC 59 17504215 17504238 GTTATTCCTTAAGACTTCAGCCAG 60 NA Rattus norvegicus 81 Scamp1 ENSRNOG00000061582 ENSRNOT00000084729 2 1 1 80 2 23885137 23908949 TCTCTGATTCTAGAACGCCTC 59 23885077 23885095 TCGGCTTCATTATTGCTGG 58 NA Rattus norvegicus 81 Scamp1 ENSRNOG00000061582 ENSRNOT00000084729 3 1 1 80 2 23885136 23908947 TCTGATTCTAGAACGCCTCC 59 23885075 23885093 GGTCGGCTTCATTATTGCT 58 NA Rattus norvegicus 81 Vom1r50 ENSRNOG00000031734 ENSRNOT00000049387 2 1 1 60 9 52400963 52400985 CTACAGTACATTCACAGTACCCA 60 52400925 52400943 TTGTGGCTCTGTCTTCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Qrich2 ENSRNOG00000025254 ENSRNOT00000034817 3 1 1 80 10 105406899 105412591 CAGGATCAGTTGGACAAGC 59 105406837 105406855 GGTTATGCTCAGAGACAGC 58 NA Rattus norvegicus 81 Vom2r16 ENSRNOG00000054736 ENSRNOT00000080747 2 1 1 80 1 62848043 62848061 ATTCAAGTGGGAAACAGCT 57 62848105 62851634 ACACAGAAGATGGCATCTG 58 NA Rattus norvegicus 81 Sncg ENSRNOG00000058006 ENSRNOT00000087150 3 1 1 224 16 10725386 10725689 CAAAGTGTAACCTCGGTGG 59 10722396 10722415 CTAGTCTCCTCCACTCTTGG 59 NA DesignNoJunction Rattus norvegicus 81 Cep350 ENSRNOG00000003882 ENSRNOT00000005235,ENSRNOT00000005195 1 2 2 80 13 73585023 73588233 TTCAGTTCGCAGATGATACC 58 73584962 73584980 TTCGTACTGGTTTGACCAC 58 NA Rattus norvegicus 81 Zfp526 ENSRNOG00000047526 ENSRNOT00000071251 1 1 1 69 1 82090587 82090605 GGAGGGTCTGTGTCAAGAG 59 82093375 82093393 CACCATCTCTGCCATTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Zfp526 ENSRNOG00000047526 ENSRNOT00000071251 2 1 1 97 1 82090559 82090577 ATAGTGAAGGGTCCCACAC 59 82093375 82093393 CACCATCTCTGCCATTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Synj2bp ENSRNOG00000006399 ENSRNOT00000009122 3 1 1 80 6 105231241 105240471 ATAAGATCCTCTCGGTAAATGG 57 105231182 105231200 ATCCTGCATTACGGAAGAG 57 NA Rattus norvegicus 81 Slc16a1 ENSRNOG00000019996 ENSRNOT00000027234 2 1 1 84 2 207119542 207119560 ATATTCAGTGCAACGACCA 57 207119608 207122617 TACTGCTGATAGGACCTCC 58 NA Rattus norvegicus 81 Best3 ENSRNOG00000005491 ENSRNOT00000007309 2 1 1 80 7 60016081 60016101 CTACAAACTGCTGTACAGGGA 60 60016137 60019756 GTAAGTAACAATCTGTACACCAGAC 60 NA Rattus norvegicus 81 Pik3c2g ENSRNOG00000034228 ENSRNOT00000041499 1 1 1 80 4 174017143 174017164 GAAATACGTACACGACAATCTC 57 174017204 174032287 CTCTGCTTTATCTTCGTGGT 58 NA Rattus norvegicus 81 Apol11a ENSRNOG00000023122 ENSRNOT00000031568 2 1 1 81 7 118840560 118840579 AAAGAGACCTGAAGAGCCTG 60 118837400 118840517 TCCTCCTCACTTGACAACTC 59 NA Rattus norvegicus 81 Apol11a ENSRNOG00000023122 ENSRNOT00000031568 3 1 1 82 7 118840560 118840579 AAAGAGACCTGAAGAGCCTG 60 118837399 118840517 TTCCTCCTCACTTGACAACTC 60 NA Rattus norvegicus 81 rno-mir-3542-1 ENSRNOG00000050396 ENSRNOT00000074009 1 1 1 67 17 9370882 9370900 CTATGGTAGGGAGAGTGGG 58 9370931 9370949 TTGGTTCTACCACCCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam120a ENSRNOG00000016779 ENSRNOT00000060568 2 1 1 80 17 16160199 16160218 AAGATTGGCTGGGAGAAGAC 60 16160257 16162116 ACCTTCTACCTTTACTTGGTCTC 60 NA Rattus norvegicus 81 RT1-Da ENSRNOG00000032844 ENSRNOT00000081202 1 1 1 60 20 4129403 4129422 TCCGCAAATTCCACTATCTG 58 4129362 4129385 ACCTCACAGTCATAGTAATCTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gmppa ENSRNOG00000019946 ENSRNOT00000085165,ENSRNOT00000027064 2 2 2 81 9 82638376 82638394 GATACCAGATCACCCACCC 59 82638434 82638607 GGATGGATGTAAACATTTCCTCTG 60 NA Rattus norvegicus 81 Corin ENSRNOG00000002302 ENSRNOT00000064128 3 1 1 80 14 38352561 38352583 GATACCACACTGAGAATAACAGC 59 38352623 38402949 CACAGAGCGATTGCTTTCC 60 NA Rattus norvegicus 81 Mut ENSRNOG00000050843 ENSRNOT00000075279 1 1 1 80 9 23337520 23337538 AGGAATCCCTAAACTTCGC 57 23335951 23337479 CCAACAATTACTTCAGAACCAG 58 NA Rattus norvegicus 81 Rpl30 ENSRNOG00000005975 ENSRNOT00000057587 2 1 1 80 7 73214482 73214500 ACATTGAATTGGGCACAGC 59 73213616 73214441 TAATATCGGAATCACCTGGGTC 60 NA Rattus norvegicus 81 Atp5j ENSRNOG00000001551 ENSRNOT00000002116 2 1 1 108 11 24287378 24287397 TATCAGCAAGAGGTGGACAG 59 24286912 24287309 GGACTTCAAATTTGGGATCCT 58 NA Rattus norvegicus 81 Il17rc ENSRNOG00000027376 ENSRNOT00000037788 2 1 1 81 4 145433141 145433162 TTTGGCTTCTTACTATACTGGG 58 145433204 145433423 TGTTCTGAGGTCCAGTCAG 59 NA Rattus norvegicus 81 RGD1563986 ENSRNOG00000011854 ENSRNOT00000015921 2 1 1 80 4 68572518 68572537 TCTTCTATGTGAACGTGGCT 59 68572271 68572480 CAAATATCTTCTCTGTGGTACAGG 59 NA Rattus norvegicus 81 Crip2 ENSRNOG00000005041 ENSRNOT00000006804 3 1 1 106 6 137956697 137956715 CTGCAACAAGACACTGACG 60 137956785 137957036 CGATATTCACGCCTTTGGG 59 NA Rattus norvegicus 81 Etv6 ENSRNOG00000005984 ENSRNOT00000007889 1 1 1 80 4 167754720 167856696 GTAGCATTAAGCAGGAACGG 59 167856739 167856757 CATGAAGTGGAGTCGAGGG 60 NA Rattus norvegicus 81 Pgap2 ENSRNOG00000020371 ENSRNOT00000055235 1 1 3 80 1 167333189 167333208 CTTCAGTCTCAATGTGGTGG 59 167333251 167333372 TCATGGATGGTGAAGTCCT 58 NA Rattus norvegicus 81 LOC100912604 ENSRNOG00000046379 ENSRNOT00000071712 2 1 1 80 3 14589846 14590603 TCGATGAGGATGTCATTGAGG 60 14590645 14590663 GGAGAGTCAGCTTTGAGCT 59 NA Rattus norvegicus 81 Ccrn4l ENSRNOG00000010799 ENSRNOT00000014348 1 1 1 60 2 140302959 140302979 AGTTATGCAGTGGAACATCCT 60 140304949 140304968 CTGGACAAAGTTGTCTTTGC 58 NA DesignNoJunction Rattus norvegicus 81 Atm ENSRNOG00000029773 ENSRNOT00000086812,ENSRNOT00000050555 1 2 2 80 8 58089853 58089872 TCCAGAGTTGGTTCACTGAG 59 58088771 58089812 CTTGTTTAGAGTGTGCTTGGT 59 NA Rattus norvegicus 81 Gsta3 ENSRNOG00000056847 ENSRNOT00000077372,ENSRNOT00000088416 1 2 2 80 9 27408407 27408427 CCATTCTCAACTACATTGCCA 59 27408468 27409549 CTGCATACATGTCGATGAGG 59 NA Rattus norvegicus 81 Crnkl1 ENSRNOG00000040045 ENSRNOT00000061588 1 1 1 60 6 18351209 18351229 AGAACTGTGATTAGCAACTGG 58 18351169 18351190 GAATTTCCTTCAGACTTTCCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbfox2 ENSRNOG00000004688 ENSRNOT00000090370,ENSRNOT00000066431 1 2 2 82 7 118179222 118179240 TAGTGCTGATGCAGACAGG 60 118176517 118179177 CGGTAGCATTATTCACCTCG 59 NA Rattus norvegicus 81 Ryk ENSRNOG00000008593 ENSRNOT00000067203 1 1 1 80 8 111353629 111353647 CCTTTAACCTGCTAGTGCC 58 111353688 111359423 CCAGCTTATATTCAACCTTGGA 58 NA Rattus norvegicus 81 Fbxo36 ENSRNOG00000017053 ENSRNOT00000022901 2 1 1 80 9 92435927 92435948 GTTTGAAATTGTAGGACAAGGC 59 92435986 92477210 CTAAAGATGATCTGAGTTCGGG 59 NA Rattus norvegicus 81 Gps2 ENSRNOG00000016360 ENSRNOT00000022041 1 1 1 80 10 56526368 56526461 CACTCAGACAGGGTTCCTC 59 56526505 56526523 AAGCTAGTCTGCTGGTTGG 60 NA Rattus norvegicus 81 AC128212.1 ENSRNOG00000054355 ENSRNOT00000082247 3 1 1 125 8 130569866 130569887 TTCCTGCTAGTTGTGGCTC 60 130569759 130569778 TGATTGCTCGCTCAGTAGAG 60 NA Rattus norvegicus 81 Galr3 ENSRNOG00000027060 ENSRNOT00000014349 3 1 1 86 7 120273128 120274023 TAGGACTGAGGAAGATGGCT 60 120274072 120274090 CAAAGATCACAGGCACTGC 60 NA InUTR Rattus norvegicus 81 Lsm12 ENSRNOG00000020894 ENSRNOT00000028368 1 1 1 111 10 90110172 90125049 GTTAGTAAGCTTGCCAGCA 58 90110079 90110097 GAATGGTCTGGAAGAGCTG 58 NA Rattus norvegicus 81 Lsm12 ENSRNOG00000020894 ENSRNOT00000028368 3 1 1 112 10 90110173 90125050 TGTTAGTAAGCTTGCCAGC 58 90110079 90110097 GAATGGTCTGGAAGAGCTG 58 NA Rattus norvegicus 81 Slco1a2 ENSRNOG00000031249 ENSRNOT00000049569 1 1 1 80 4 176446648 176447982 ATAACTTCAGGCGCATTTACC 59 176446588 176446609 GTATCAGAATGAAGAGTGCAGG 59 NA Rattus norvegicus 81 Vat1 ENSRNOG00000020684 ENSRNOT00000028084 2 1 1 83 10 89368742 89370590 TTGTCACTTACGGAATGGC 58 89368677 89368695 TGAACTGATTCCACCAGGT 59 NA Rattus norvegicus 81 Sp100 ENSRNOG00000022769 ENSRNOT00000034152 3 1 1 80 9 92700468 92704866 TTCCAAACCACTGGAAAGC 59 92704908 92704928 TCTTTATATCTACCAGCCGCA 59 NA Rattus norvegicus 81 Arpc5 ENSRNOG00000028062 ENSRNOT00000079861 2 1 2 93 13 70175093 70175111 AGAACAAGTTCGTGGACGA 59 70176632 70177311 GTCATGTTTCCCACACGAC 59 NA Rattus norvegicus 81 Olr1083 ENSRNOG00000061480 ENSRNOT00000088783 3 1 1 60 7 13587665 13587684 CCTCTCACCTTTCCATTGTC 58 13587624 13587642 GAACTGACGTACACTCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arglu1 ENSRNOG00000024142 ENSRNOT00000057347 2 1 2 136 16 86607389 86607407 GACAGAGACAAGCTGAGCT 59 86609772 86624237 TTGTTCTTCAGCCAGTTTGG 59 NA Rattus norvegicus 81 Kcns2 ENSRNOG00000011369 ENSRNOT00000015707 1 1 1 166 7 73588250 73588268 CAGGTTTGGGAAGTTTCCC 59 73588991 73589011 GCCTACATTGATTCGGATCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Khdc1c ENSRNOG00000028595 ENSRNOT00000051403 1 1 1 80 9 27546612 27546748 GAGGAATACATATTTGGCCCG 59 27546790 27546808 CCTTTCCAGCTGAATGAGG 58 NA Rattus norvegicus 81 Sbf2 ENSRNOG00000009812 ENSRNOT00000013126,ENSRNOT00000077125 2 2 2 80 1 175208243 175208261 AGAACCAGAATGCAACTCC 58 175202221 175208202 CCATTATTGAAACAACAGGTGG 58 NA Rattus norvegicus 81 LOC100909683 ENSRNOG00000046224 ENSRNOT00000071599 3 1 1 60 7 15722792 15722812 TTCACATTTGGCTACACTCAC 59 15722752 15722772 CTACATAGCGGTCATAACCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp606 ENSRNOG00000019127 ENSRNOT00000079249 3 1 3 98 1 66253720 66253738 CCTGAGGAGAGCAGAAGAC 59 66253637 66253658 AAACCTTGGAACGTGACCT 60 NA Rattus norvegicus 81 Akap4 ENSRNOG00000002921 ENSRNOT00000003939 3 1 1 80 X 16302519 16306010 TGGCACTACAAAGATGTCTG 58 16302458 16302478 TTTGGGCTGTAAAGATCTACC 58 NA Rattus norvegicus 81 Slc26a1 ENSRNOG00000000041 ENSRNOT00000000047 3 1 1 103 14 2052583 2053343 GCTTTATCAGGTCCTCATGG 58 2053409 2053427 AGATGGTCACAGAAGCTCC 59 NA Rattus norvegicus 81 Rgs5 ENSRNOG00000002730 ENSRNOT00000079593,ENSRNOT00000003705 1 2 2 88 13 87992078 88000938 GAGCAACTACGGATTTGCC 59 88000990 88001008 AATTCTCACAGGCAACCCA 60 NA Rattus norvegicus 81 Mterfd2 ENSRNOG00000037376 ENSRNOT00000056558 2 1 1 82 9 100443966 100443985 CCAGTTGCTGAAACTGTCTG 60 100442211 100443922 TCAGTTTCCCTTCTCCAAGG 59 NA Rattus norvegicus 81 Mbl1 ENSRNOG00000011706 ENSRNOT00000015723 3 1 1 81 16 18740565 18741424 TAACCAACAAGTTGCATGCC 60 18741468 18741486 AAGGGCATCCTTTCATGGT 59 NA Rattus norvegicus 81 Col9a1 ENSRNOG00000012920 ENSRNOT00000018116 3 1 1 80 9 30420732 30420752 CTGTTTCTCATGGTGGAAGTG 59 30420791 30420924 GAGAAATCAGGTCAAATCCTGG 59 NA Rattus norvegicus 81 Abat ENSRNOG00000002636 ENSRNOT00000003633 2 1 1 80 10 7097344 7097362 CACCTTCTGTTCCTTCGAC 58 7094491 7097301 AGTACCACACCTTTGTTCCT 59 NA Rattus norvegicus 81 Kcnq5 ENSRNOG00000013781 ENSRNOT00000040034,ENSRNOT00000018552 3 2 2 80 9 27642216 27642234 GATGAGAAGTCGGTCTCCA 59 27639509 27642173 TTGTTCTTTCTTGGTAGGGC 58 NA Rattus norvegicus 81 Cops7b ENSRNOG00000018723 ENSRNOT00000025411 1 1 1 80 9 93626406 93628014 CTTGCATGAATGGTGTGAC 57 93628058 93628076 TCTTTGTACTGGTTGGCTC 57 NA Rattus norvegicus 81 Tmem117 ENSRNOG00000006068 ENSRNOT00000008159 1 1 1 81 7 136316878 136316896 CCCAGTGATGAGGTTTCCA 59 136316941 136380885 ATTCCCAGTCCTGCATCAC 60 NA Rattus norvegicus 81 Aldh9a1 ENSRNOG00000004027 ENSRNOT00000005611 2 1 1 80 13 85587828 85587847 CAGTTTCTGTGTCAGCATCG 60 85587888 85588440 CATCTCCATGATCTTCATGCC 59 NA Rattus norvegicus 81 Sftpa1 ENSRNOG00000011438 ENSRNOT00000047870 1 1 1 84 16 18717970 18718229 AACAATGGGAGTCCTCAGC 60 18718277 18718295 AAAGTTGACTGACTGCCCA 60 NA Rattus norvegicus 81 Syp ENSRNOG00000059720 ENSRNOT00000085907 3 1 1 91 X 15704081 15704099 CCTTCCTCTACTCCATGGG 59 15703327 15704027 CAGAAAGTCCATCATAGGCC 58 NA Rattus norvegicus 81 Ppap2b ENSRNOG00000008116 ENSRNOT00000011237 3 1 1 80 5 124751513 124751532 TACAAACACCATCCTAGCGA 59 124751574 124763664 AGACACGAAGAACACTATGC 58 NA Rattus norvegicus 81 Postn ENSRNOG00000012660 ENSRNOT00000084527,ENSRNOT00000017453 2 2 2 80 2 143670404 143670424 TCTACAATGGACAGATTCTGG 57 143670465 143671698 TTTCTATGCAGATAGCCGTC 58 NA Rattus norvegicus 81 Sgk3 ENSRNOG00000049052 ENSRNOT00000072210 1 1 1 80 5 9080507 9086292 AGAGCTTTACAACCATCCAG 58 9080446 9080466 TCATCTTCAGATGGATCTGAC 57 NA Rattus norvegicus 81 Col19a1 ENSRNOG00000012759 ENSRNOT00000017169 2 1 1 80 9 30844110 30844128 GACTGTCAGGGACAAACCA 60 30827716 30829204 AGATGTGACATGTTACTGTCGT 60 NA Rattus norvegicus 81 Fam21c ENSRNOG00000011653 ENSRNOT00000015620 1 1 1 80 4 148148998 148153698 AAGCTGAGCAGGAGAAGAC 59 148153740 148153760 GTAACCCATAGTTCACAGCCT 60 NA Rattus norvegicus 81 Atp6v0b ENSRNOG00000019655 ENSRNOT00000026704 2 1 1 81 5 136720433 136720661 TTTGATGTGGCATGGTTCC 59 136720370 136720389 CAGACAGGGAAATTGCTAGG 58 NA Rattus norvegicus 81 Oplah ENSRNOG00000011781 ENSRNOT00000080724,ENSRNOT00000077314,ENSRNOT00000016424 2 3 3 80 7 117362799 117362817 CGCTTACCTTACTCCCACC 60 117362656 117362757 ACTTGCACATTCTTTAGCTGG 59 NA Rattus norvegicus 81 Gnai2 ENSRNOG00000016592 ENSRNOT00000022550,ENSRNOT00000078720 3 2 2 80 8 116376251 116376503 CAAGCAGATGAAGATCATCCAC 60 116376192 116376210 GTGTTGCTGTAGACAACCG 59 NA Rattus norvegicus 81 Hs6st1 ENSRNOG00000014516 ENSRNOT00000019966 3 1 1 81 9 42620285 42620303 AACTCACCAACTGTGTTCC 58 42620344 42656276 GTGATGTAGTAGAACTTTCTGGG 59 NA Rattus norvegicus 81 AABR07042903.1 ENSRNOG00000030174 ENSRNOT00000043480 1 1 1 85 19 14346728 14346746 GACCTACAGCTACCTGACC 59 14346799 14346832 GAGACTCTGGTGTGGTCAG 59 NA Rattus norvegicus 81 Rhoc ENSRNOG00000012630 ENSRNOT00000017254 2 1 2 114 2 207272116 207272135 TTTCTGAGTCTTGCCTCTCC 60 207272212 207275333 GTGGCCATGACTGAAATCC 59 NA InUTR Rattus norvegicus 81 Rad54l ENSRNOG00000013148 ENSRNOT00000018004 1 1 1 80 5 134951967 134952491 GCTGTGTAATCATCCAGCTC 59 134951906 134951924 GGGAAGATACCCAAAGTGC 58 NA Rattus norvegicus 81 Rad54l ENSRNOG00000013148 ENSRNOT00000018004 3 1 1 80 5 134952820 134954483 TCAGTATTGTGAACAGGTGC 58 134952759 134952777 CCACCTGCTCAATCTTCAC 59 NA Rattus norvegicus 81 Nnat ENSRNOG00000024923 ENSRNOT00000072502 2 1 2 80 3 154045030 154045050 GCATTTACTGGGTAGGATTCG 59 154045092 154045360 GGGAGTACCTGAACACCTC 59 NA Rattus norvegicus 81 Dlec1 ENSRNOG00000032085 ENSRNOT00000052275 2 1 1 80 8 127799413 127799433 GACTTAGAGTACACCACAGAC 58 127799475 127799644 ACTTGCCTTCTTGATGGTG 58 NA Rattus norvegicus 81 LOC100359763 ENSRNOG00000013191 ENSRNOT00000017602 1 1 1 60 7 93376581 93376600 TCAAGCTGGTTTCAAAGCAC 60 93376623 93376641 TCTCCACCCTTTGTGTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Enc1 ENSRNOG00000016541 ENSRNOT00000022144 3 1 1 111 2 28054717 28054736 ATAACCACGGTTCCCTACTC 59 28054810 28058631 TGTCAGAGTGAGCTCACTC 59 NA InUTR Rattus norvegicus 81 Lpcat2 ENSRNOG00000016643 ENSRNOT00000022359 1 1 1 80 19 15520517 15521802 ACAAGCTGGATACTGTAACCT 59 15516626 15516647 TGAACAGTTGACAGAATGTGAG 59 NA Rattus norvegicus 81 Btnl3 ENSRNOG00000039396 ENSRNOT00000077950,ENSRNOT00000039553 1 2 2 60 20 4170826 4170845 GACAACATCATCACGCTCTC 59 4170867 4170886 CCACCTCCCAGTAGTATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC685067 ENSRNOG00000029191 ENSRNOT00000037181 1 1 1 80 2 248237720 248237738 AGTCTCTACCTAGAGGCCA 58 248237780 248238828 AACATGATTTGCCTTCACTCC 59 NA Rattus norvegicus 81 Rnf208 ENSRNOG00000010607 ENSRNOT00000014087 3 1 1 231 3 2462470 2462488 CTGCTGACCTCTGCTACAG 60 2462871 2462889 TTTCAGGCAGGACATGAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Slc4a1 ENSRNOG00000020951 ENSRNOT00000028445,ENSRNOT00000092102 3 2 2 80 10 90300747 90300765 TTTGCTTCTGTTCTACCCG 58 90300172 90300704 TTTACTGACAATCAGCGTGG 59 NA Rattus norvegicus 81 Uap1 ENSRNOG00000002926 ENSRNOT00000058560 2 1 1 80 13 88464953 88464973 TTGAAGGATGCCAATGATGTG 59 88464086 88464913 ATAGCCTTCAAGTCCTTCTCC 59 NA Rattus norvegicus 81 Ddx20 ENSRNOG00000015274 ENSRNOT00000068152 1 1 1 80 2 208145578 208146158 CCTTCTCCCTTTACCAGATCC 60 208145518 208145537 ATCGCAGCTTTAACTTCCAC 59 NA Rattus norvegicus 81 Duoxa2 ENSRNOG00000017805 ENSRNOT00000024201 3 1 1 81 3 114237876 114238264 CAGAAATTGTGGCTGTACAC 57 114238307 114238326 GTACTGAAGGCTTTGTAGGA 57 NA Rattus norvegicus 81 Cpsf1 ENSRNOG00000030705 ENSRNOT00000086796,ENSRNOT00000066244 3 2 2 80 7 117663823 117663841 CACCTTGCACTAGAATCCC 58 117663677 117663781 GGTGGATGTATCTGTCATCTC 58 NA Rattus norvegicus 81 Atp6v1e2 ENSRNOG00000015566 ENSRNOT00000020845 1 1 1 60 6 10511706 10511726 CTAGAAAGCCGACTGAATCTC 58 10511666 10511686 ACAAAGTCCTTCGTATCTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wnt2b ENSRNOG00000014385 ENSRNOT00000019349 1 1 1 115 2 207449029 207455085 GTCCTGGTGGTACATAGGG 59 207448932 207448950 CTACTGAGCGCATGATGTC 59 NA Rattus norvegicus 81 LOC100911119 ENSRNOG00000032769 ENSRNOT00000046355,ENSRNOT00000081843 1 2 2 136 3 143807136 143807154 CTGTCCAAGGGATCACTGG 60 143804040 143804060 GCATTGGTCATCTTGTAGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Zcrb1 ENSRNOG00000004996 ENSRNOT00000006780 1 1 1 105 7 134595822 134595842 AGGAAGAGTAAAGGTGTTGCA 60 134595447 134595761 CCTTTATCACTCTACCGAATAACTG 59 NA Rattus norvegicus 81 Rab23 ENSRNOG00000012629 ENSRNOT00000090385,ENSRNOT00000016933 3 2 2 82 9 38473190 38474097 CAAGATAGGTGTCTTTAATGCG 58 38473129 38473147 GGTTGATGACATCTCCACC 58 NA Rattus norvegicus 81 Tmem5 ENSRNOG00000004421 ENSRNOT00000006051 1 1 1 80 7 64329774 64330615 TTTCTGCAAGAGAACAGTGG 59 64329713 64329732 GGTCACTATGAAGCAAAGCA 59 NA Rattus norvegicus 81 Zfp324 ENSRNOG00000027436 ENSRNOT00000036874 3 1 1 83 1 65607925 65608683 CAGCCTTGGATCCAATTACAG 59 65607862 65607880 ATCCTAACAGGCCTGTCAC 59 NA Rattus norvegicus 81 RGD1564719 ENSRNOG00000022393 ENSRNOT00000033396 2 1 1 82 1 91661737 91661904 CTTGCTCGCTTTAGAAATTCTG 58 91661676 91661694 GCTGGGAAGTACTGTTCAC 58 NA Rattus norvegicus 81 Tjp2 ENSRNOG00000015030 ENSRNOT00000065921 1 1 1 80 1 241964359 241964380 CCTCTACCTGTTAGAAATCCCT 59 241963473 241964321 AGGATGTCTCTATACACGTCTG 59 NA Rattus norvegicus 81 Kap ENSRNOG00000005858 ENSRNOT00000007806 1 1 1 98 4 167551951 167552099 GCATACAGATTTCTGAGCTCTC 59 167550152 167550170 ATGGAAACTCCACTGTGCT 59 NA Rattus norvegicus 81 Kdelc2 ENSRNOG00000007177 ENSRNOT00000009497 2 1 1 80 8 57978809 57978827 GGCAGTTAACTGCTAGGGA 59 57978871 57980275 GCTCCGCATATTTCTGCAG 60 NA Rattus norvegicus 81 Fam212b ENSRNOG00000015691 ENSRNOT00000021001 1 1 1 82 2 208170869 208182821 AAACAGGAGCTGATGTCCA 59 208182867 208182885 AGTTCTTGAAGTGCACCCA 60 NA Rattus norvegicus 81 Zfp819 ENSRNOG00000030160 ENSRNOT00000077073 3 1 2 95 1 99532631 99533735 TCATGTGAGAGGTTGGTGTC 60 99533793 99533811 CTGGTACAGGCATCTCTGG 60 NA Rattus norvegicus 81 Zfp275 ENSRNOG00000061073 ENSRNOT00000079860 1 1 1 80 X 157464616 157464635 GGAGTGGCTGAGTCTAAGTC 60 157463530 157464573 ACAGGAACTCCAATGGAGG 59 NA Rattus norvegicus 81 Cnksr3 ENSRNOG00000018052 ENSRNOT00000024418,ENSRNOT00000082931 1 2 2 80 1 43825007 43831778 TCTGCGCACTGAATTATGG 58 43824945 43824963 GCAGATTATGGGAGGATGC 58 NA Rattus norvegicus 81 Ctnnd2 ENSRNOG00000010649 ENSRNOT00000044871 2 1 1 80 2 84045910 84052428 AAAGGAGATAAGCACTCTCCA 59 84052469 84052488 CCTCAGATCTCGATACTGCC 60 NA Rattus norvegicus 81 Csf1 ENSRNOG00000018659 ENSRNOT00000025222,ENSRNOT00000081835 1 2 3 94 2 210547142 210550355 CTTCTTCGACATGGATGGG 58 210547066 210547084 AATCATGTGGCTACAGTGC 58 NA Rattus norvegicus 81 Kcng3 ENSRNOG00000004535 ENSRNOT00000006094 2 1 1 130 6 6842160 6842178 TGTCTATGGTGGTGCTGTG 60 6795683 6842067 AGCTTCAATTATCCCGGAGG 60 NA Rattus norvegicus 81 Nsmce4a ENSRNOG00000020452 ENSRNOT00000027721 2 1 1 80 1 201109469 201109487 GGGAGGACATACTGAATGC 58 201106707 201109428 CTCGTGACACTTCATTAAACAG 58 NA Rattus norvegicus 81 Olr1666 ENSRNOG00000017868 ENSRNOT00000024040 1 1 1 60 19 27534999 27535020 TGTACCTCAGTTCTACATGGAC 59 27534960 27534981 TACAGAACAGAAGCAAACACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrif1 ENSRNOG00000017784 ENSRNOT00000024036 1 1 2 80 2 209444640 209444658 TACGTTCCTCTGTTGATGC 58 209444702 209445891 TCTCATACTGGGTCTGTGG 58 NA Rattus norvegicus 81 Lrif1 ENSRNOG00000017784 ENSRNOT00000082631,ENSRNOT00000024036 3 2 2 123 2 209446116 209446135 GCAAACGTTGTGATGAAGGA 60 209446980 209446999 TCATGACCATGTCACTAGCA 59 NA DesignNoJunction Rattus norvegicus 81 Kcne1 ENSRNOG00000001984 ENSRNOT00000002717 2 1 1 60 11 32498575 32498594 GCTGAGTTACATCCGATCCA 60 32498534 32498554 AATGTACACGTTGAAAGGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfrsf26 ENSRNOG00000043486 ENSRNOT00000088856,ENSRNOT00000066943 1 2 2 91 1 216819389 216819407 CAAGGTAAGCAGCACAACC 60 216818432 216819334 TAATGAGGTGAGTGCCAGC 60 NA Rattus norvegicus 81 Aldh2 ENSRNOG00000001344 ENSRNOT00000001816 3 1 1 80 12 40494728 40494747 TCTTCACAAAGGACCTGGAC 60 40494789 40497066 CATCGTAGCAGTTGATCCAC 59 NA Rattus norvegicus 81 Lppr2 ENSRNOG00000012164 ENSRNOT00000016790 2 1 1 93 8 22951257 22951406 CACCCTCACGATCCTTCTG 60 22951463 22951481 GGACACAATGGTGCTTTCC 60 NA Rattus norvegicus 81 Cep250 ENSRNOG00000019340 ENSRNOT00000055251 2 1 1 80 3 151508910 151509631 AGCAGGAGTTCTTCAAGGG 59 151509675 151509693 GTCGGAAGGTTACCACCTC 60 NA Rattus norvegicus 81 Slc48a1 ENSRNOG00000053196 ENSRNOT00000079388 1 1 1 80 7 139277770 139278312 CAGCACCAGAGTTTCAAAGAC 60 139278353 139278372 TAGAAAGGCCCACTTGAAGG 60 NA Rattus norvegicus 81 Slc48a1 ENSRNOG00000053196 ENSRNOT00000079388 2 1 1 87 7 139277772 139278313 GCACCAGAGTTTCAAAGACC 60 139278363 139278381 GAGGCTGAGTAGAAAGGCC 60 NA Rattus norvegicus 81 Lats1 ENSRNOG00000014916 ENSRNOT00000020098 2 1 1 80 1 1804144 1804162 GTCCTGAAGTCTCATCAGC 58 1804204 1806438 ATCTTGAGATAATCCAACCCG 58 NA Rattus norvegicus 81 Frg1 ENSRNOG00000009846 ENSRNOT00000013078 2 1 1 80 16 53960071 53961246 TTGACATTGTGGGAATCTGG 58 53961286 53961307 CTCCTTTATCCATTTCAATGGC 58 NA Rattus norvegicus 81 Olr956 ENSRNOG00000053663 ENSRNOT00000085061 2 1 1 60 7 6753558 6753579 TCTTAAACCATCAGTCAAGCAG 59 6753519 6753539 GGTATTGAGCACAGAAATTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564039 ENSRNOG00000048021 ENSRNOT00000073262 1 1 1 87 3 143395910 143395931 TGTAATTTCCAGAGGGAATCCT 59 143394848 143394918 GACATAGTTTAGATATGGGCACTG 59 NA Rattus norvegicus 81 Scn5a ENSRNOG00000015049 ENSRNOT00000064555,ENSRNOT00000066932,ENSRNOT00000082892 1 3 3 80 8 128246251 128246269 ACCAATGCCTTGTATGTCC 58 128236903 128246207 GCTAAAGAGCGAGTGTACC 58 NA Rattus norvegicus 81 Bloc1s2 ENSRNOG00000012684 ENSRNOT00000017006,ENSRNOT00000090755 2 2 2 88 1 263917746 263917765 CTCACGAGCTTGAAGTACCT 60 263916774 263917695 AGTCCGGCATATTTCTGGT 59 NA Rattus norvegicus 81 Hnf1b ENSRNOG00000002598 ENSRNOT00000047427 3 1 1 81 10 71209286 71209304 GTTCCCATCTGCAATGGTG 59 71209348 71217974 CAGTGGACACTGTTTACTGG 59 NA Rattus norvegicus 81 AABR07011744.1 ENSRNOG00000061747 ENSRNOT00000089063 2 1 1 131 2 167878151 167892233 TTCCCTTTGACAACAGAGGA 59 167878039 167878057 GTTTCTCCTCAGAGCTGGG 60 NA Rattus norvegicus 81 Rxrg ENSRNOG00000004537 ENSRNOT00000077227,ENSRNOT00000006117 2 2 2 80 13 85852632 85852650 TGAACTACCCATCCACCAG 59 85852693 85854906 AGTGCTTTCCTGAGGATCTG 60 NA Rattus norvegicus 81 Mettl6 ENSRNOG00000057372 ENSRNOT00000084645 1 1 1 80 16 7581460 7586021 GACTACGTGAAGCAACATCC 59 7581399 7581420 AAGAAGGTCATCTCTAGTGAGG 59 NA Rattus norvegicus 81 Rapgef3 ENSRNOG00000059961 ENSRNOT00000078644,ENSRNOT00000083182 3 2 2 80 7 139244818 139245129 AGGCAGGAACCGATATACG 59 139244756 139244775 GAATCCGGTCTCATAGCCTC 60 NA Rattus norvegicus 81 Epha8 ENSRNOG00000013036 ENSRNOT00000017559 1 1 1 80 5 155298942 155299351 CATCTGCAAGAAGAGGCAC 59 155298880 155298898 TGGCCATTCTGGTAATGCA 60 NA Rattus norvegicus 81 Ctbp1 ENSRNOG00000005428 ENSRNOT00000057929,ENSRNOT00000065393 1 2 2 80 14 82775367 82775386 AGCTCTCAGAATCATCGTCC 59 82775429 82777079 ACTGCGATGCCTAGATCAC 60 NA Rattus norvegicus 81 RGD1309049 ENSRNOG00000014123 ENSRNOT00000018896 1 1 1 60 9 29337721 29337740 GTGAAGTATAACCGCAAGGA 58 29337680 29337700 GTTCTAAGATCCACTCGTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defb27 ENSRNOG00000036896 ENSRNOT00000055407 2 1 1 80 3 148073474 148073492 CTGTCCCAGGTCATTCCAG 60 148070101 148070119 CTCTTTCCTGAGGCACTCC 60 NA DesignNoJunction Rattus norvegicus 81 Scd1 ENSRNOG00000013552 ENSRNOT00000018447 1 1 1 80 1 264171928 264172671 ACATGCTCCAAGAGATCTCC 59 264171867 264171885 GTCCATTCTGCAGGTTTCC 59 NA Rattus norvegicus 81 Cthrc1 ENSRNOG00000004578 ENSRNOT00000006142 1 1 1 80 7 77966929 77966947 GCCTCTGAGAATCCCAAGG 60 77966988 77970731 TAGGCACATCCCATTATACAGG 60 NA Rattus norvegicus 81 Eci1 ENSRNOG00000008843 ENSRNOT00000083312 1 1 2 80 10 13808260 13808278 CCACTACGCTGAGTACTGG 60 13808320 13809262 CATTGATGGCAGATATGTCAGG 59 NA Rattus norvegicus 81 Olr903 ENSRNOG00000047956 ENSRNOT00000050898 2 1 1 60 7 5401836 5401856 TTCTCCTTGCTATCATGTCCT 59 5401876 5401896 ATGTAGTGCAGAGGTTTACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nop56 ENSRNOG00000007128 ENSRNOT00000009564 3 1 1 80 3 122806831 122807073 GATTGCTTCTCTGAGGTCC 58 122807116 122807135 CTCATAGAAAGAAAGCCGCT 58 NA Rattus norvegicus 81 Sdf2 ENSRNOG00000012121 ENSRNOT00000016297 3 1 1 80 10 65514506 65517218 TCTCTGGAAACCAGGAAGTG 59 65517260 65517279 CATTACAGAGCACTGTCCAG 58 NA Rattus norvegicus 81 Leng1 ENSRNOG00000061893 ENSRNOT00000091742 2 1 1 111 1 64129300 64129318 TTGAGGGAGATGCAGAAGC 60 64129393 64130588 TTTCTAGGGAAGGTGGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Ola1 ENSRNOG00000019047 ENSRNOT00000026040 3 1 1 80 3 59862206 59862230 TGGGCCCATTATAGATAAACTAGAG 60 59848069 59862171 CACATTATGTCATATTCGGGCT 59 NA Rattus norvegicus 81 Wdfy3 ENSRNOG00000061121 ENSRNOT00000088047 1 1 1 80 14 9378054 9378072 CTGTACGCTTCTCCCTCAC 60 9378114 9381191 GAAATCGACTGCACTTCTGAC 60 NA Rattus norvegicus 81 Acat1 ENSRNOG00000007862 ENSRNOT00000010573 2 1 1 80 8 58176090 58178795 ATCTCAGTGAAAGGTAAACCAG 58 58176031 58176051 CTTTGGCACTTTACTGAAGTC 58 NA Rattus norvegicus 81 LOC684683 ENSRNOG00000049901 ENSRNOT00000071299 3 1 1 84 3 73328369 73328387 ACCCACCACTCATTAAGCT 59 73328432 73328492 CTGGAAAGATTTAAGCTTGCTG 58 NA Rattus norvegicus 81 Tm4sf4 ENSRNOG00000016437 ENSRNOT00000022105 2 1 1 80 2 147533319 147540320 AGCGATTTGCGATGTTCAC 60 147540363 147540382 CGGCTGAGACGATAAATGAG 59 NA Rattus norvegicus 81 LOC691170 ENSRNOG00000022871 ENSRNOT00000034545 3 1 1 80 7 13323912 13323933 CAAGTTACAGCATGGATTTGAG 58 13323971 13335412 GCACTTACATTATGGACATCTG 57 NA Rattus norvegicus 81 LOC100910882 ENSRNOG00000019848 ENSRNOT00000026964 1 1 1 80 3 151708248 151711045 GTAGGAAAGGTTCGAGATGTG 59 151708188 151708206 AACAAACTCCACATAGGCG 58 NA Rattus norvegicus 81 Coro1b ENSRNOG00000021828 ENSRNOT00000029829 1 1 1 80 1 219399171 219399189 TGGATATTGACTGGTGCCC 60 219399233 219399355 GAATCTGCCACACCATGAC 59 NA Rattus norvegicus 81 Inpp5j ENSRNOG00000019361 ENSRNOT00000026293 2 1 1 80 14 83731927 83732060 ATATCTACCAGGTGACCTTCAG 59 83731868 83731887 GGTGGTGGCTATAGTAACCC 60 NA Rattus norvegicus 81 Emc10 ENSRNOG00000019532 ENSRNOT00000026445 1 1 1 145 1 100498354 100499927 TTTGAGATTGGTGATGGCG 59 100497610 100497628 TAGAGGCCATTGACAGCAG 60 NA Rattus norvegicus 81 Zfp202 ENSRNOG00000058932 ENSRNOT00000085084,ENSRNOT00000084416 1 2 2 80 8 44063522 44063540 ACCTTCCCACAGAACAAGG 60 44063584 44064416 TGAATGTGACCAGTCCCTG 59 NA Rattus norvegicus 81 Zfp207 ENSRNOG00000000236 ENSRNOT00000000253 3 1 1 80 10 67773585 67774180 TATCACTGGAAGAAAGAAGGG 57 67774220 67774240 GATTACCAATCGGAGTTTGTC 57 NA Rattus norvegicus 81 AABR07002241.1 ENSRNOG00000015707 ENSRNOT00000021046 1 1 1 80 1 69514823 69521269 TCTGCTACTGATATGGATCAGTG 60 69521307 69521327 TTTCTGAATGCATTTGTCCCG 60 NA Rattus norvegicus 81 Capza1 ENSRNOG00000013538 ENSRNOT00000056015 1 1 1 80 2 207322417 207322438 CATTTGCCCAGTATAACATGGA 59 207321635 207322380 CATGCTCTGTAATTAAGACCTGG 59 NA Rattus norvegicus 81 Shroom4 ENSRNOG00000002959 ENSRNOT00000003971 1 1 1 80 X 16756030 16756050 GAATTTCCTGTGGACAAGTGG 60 16733313 16755991 CTTAGAATGAGCCATTTCCCTC 59 NA Rattus norvegicus 81 Dusp27 ENSRNOG00000003722 ENSRNOT00000004965 2 1 1 80 13 84306056 84312198 CCTATAGAGGGAAAGTCCTGG 59 84305996 84306014 AGATCATCAGGTAGGCGAC 59 NA Rattus norvegicus 81 Magi3 ENSRNOG00000019885 ENSRNOT00000088095,ENSRNOT00000026952 3 2 2 80 2 206591827 206591847 TCAGAAAGGATCGATTGACCA 59 206575542 206591785 CTTGTAGTGCATGGGATGG 58 NA Rattus norvegicus 81 LOC498435 ENSRNOG00000002134 ENSRNOT00000071877,ENSRNOT00000040985,ENSRNOT00000074889 3 3 3 80 14 5937923 5938129 GAGCAGCTGTACTATGTTACAG 59 5938167 5938188 GGAATTCTTGATTCCATCAGGA 58 NA Rattus norvegicus 81 AABR07012775.1 ENSRNOG00000053044 ENSRNOT00000054860 3 1 1 60 2 208225780 208225801 TACATGCGAATCTACAAGAAGG 58 208225741 208225760 TTTGAACAGTGCTCATTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd164 ENSRNOG00000000304 ENSRNOT00000000334 2 1 1 80 20 46253234 46254471 GCCATGAAGCAAATAAGACCT 59 46254511 46254531 CAGAACAGGAGTCAGTACTGG 60 NA Rattus norvegicus 81 RGD1561875 ENSRNOG00000047992 ENSRNOT00000050291 1 1 1 60 2 235951140 235951160 TTGTAGACATCAAGGGAATGG 58 235951100 235951118 CCGTGGTAACACTTATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnj10 ENSRNOG00000007705 ENSRNOT00000010146 3 1 1 111 13 90751618 90751637 CACTTACTGGGCCTTCCTC 60 90751712 90751730 GAGCTGTGCAATGAGAAGC 60 NA Rattus norvegicus 81 Zc3h12d ENSRNOG00000016041 ENSRNOT00000065646 1 1 1 80 1 1942808 1955927 ATGTGGCTATGAGTCATGGA 59 1955970 1955988 CTCTGTCCCTGAACCAGTC 59 NA Rattus norvegicus 81 Pnck ENSRNOG00000058317 ENSRNOT00000090795 3 1 1 80 X 157153459 157153550 TACAGCATCTCTGGATCTCTG 59 157153590 157153610 AATTCTTCTGGATCTGCTCAC 58 NA Rattus norvegicus 81 LOC102551901 ENSRNOG00000045554 ENSRNOT00000072309 2 1 1 80 7 139050713 139050731 TTGGAACCTGATTCTGCTG 58 139049633 139050150 GTGGTGTTGTAGTAACTGGA 57 NA Rattus norvegicus 81 Dctn6 ENSRNOG00000013254 ENSRNOT00000017756 3 1 1 80 16 61800745 61807505 ATGTAACCATAGGTCCTAGGAC 59 61807545 61807564 CTTCGCCGATAATGATTGGG 59 NA Rattus norvegicus 81 Map3k3 ENSRNOG00000061424 ENSRNOT00000088656 2 1 1 80 10 94311663 94314482 GAATAATGAGCTCTCCATCCTG 59 94314523 94314541 ATACTCGCGCTTCTATCCA 58 NA Rattus norvegicus 81 Zdhhc5 ENSRNOG00000006832 ENSRNOT00000009708 3 1 1 80 3 72091803 72092215 ATTACTGACACCCAAAGACG 58 72091742 72091760 GCTGAGCCTATACTCTTGG 57 NA Rattus norvegicus 81 Cst3 ENSRNOG00000005195 ENSRNOT00000007175 3 1 1 82 3 143220859 143220879 CCGAACTACATGTACCAAGTC 59 143219982 143220815 AGAGTGCCTTCCTCATCAG 59 NA Rattus norvegicus 81 Xylb ENSRNOG00000014168 ENSRNOT00000019106 2 1 1 86 8 128069211 128069674 ATAACATGGAGGTCTCGGC 59 128069724 128069742 CTGCATGAATCCTCTTGGC 59 NA Rattus norvegicus 81 Angpt1 ENSRNOG00000005854 ENSRNOT00000007979 3 1 1 80 7 81448602 81448620 AACCAGCCTCTTGTCTCAG 59 81437412 81448562 CGGGATGTTTGATTTAGTACCTG 60 NA Rattus norvegicus 81 C2cd4d ENSRNOG00000020832 ENSRNOT00000028263 1 1 1 76 2 195604410 195604429 ACCCAATCTTCAACGAAGAC 58 195604468 195604486 CTTGGCCCTTAGACTACGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562485 ENSRNOG00000028847 ENSRNOT00000040332 2 1 1 60 X 96459936 96459958 CAACTAAGAAGACACATCCAGAG 59 96459898 96459917 ACATTCTTTCCTCCCTTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klk5l ENSRNOG00000046267 ENSRNOT00000073513 1 1 1 84 1 99363047 99363069 AGGTGGCTATGTATCACTATGAC 60 99363113 99371058 TTATGCGAGGGAGAAGTGC 60 NA Rattus norvegicus 81 Il18r1 ENSRNOG00000015027 ENSRNOT00000020194 3 1 1 80 9 47198026 47200453 CACGTTGCTGTATAAGAACTG 57 47200493 47200513 TAACCTTCATCTCCAAACTCG 58 NA Rattus norvegicus 81 Casp3 ENSRNOG00000010475 ENSRNOT00000014095 2 1 1 80 16 48848307 48848986 ACTCTTCATCATTCAGGCCT 59 48848246 48848265 GCCATATCATCGTCAGTTCC 59 NA Rattus norvegicus 81 Nt5c3b ENSRNOG00000016475 ENSRNOT00000080006 1 1 1 80 10 88350859 88354770 ATTGTCGCAAAGAGCTCAC 59 88350797 88350815 GCTTCTCTTTGATGGTCCG 59 NA Rattus norvegicus 81 Serpini2 ENSRNOG00000009903 ENSRNOT00000013452 2 1 1 81 2 173652224 173652242 TATGTCTCCAGAGCCATGC 59 173649645 173652179 TGTTTATGCCTGTGGATGC 59 NA Rattus norvegicus 81 Akr7a3 ENSRNOG00000017899 ENSRNOT00000024160 3 1 1 85 5 157809364 157809383 CTATGTCTCCTGGGAAGTGG 59 157809431 157809661 TGTACATGCCCTGGTACAC 59 NA Rattus norvegicus 81 AABR07007399.1 ENSRNOG00000049010 ENSRNOT00000048860 1 1 1 60 2 12312043 12312061 CCAAACTCAGATGTCTGGC 59 12312001 12312019 TGGCTTCGAATCTTCTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr50 ENSRNOG00000015432 ENSRNOT00000020691 2 1 1 60 1 168014290 168014313 CTAATTTCTATCTGCTGGTTCCTC 59 168014253 168014272 TTGGTTCTGACTCCGTAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100364989 ENSRNOG00000037452 ENSRNOT00000056688 3 1 1 82 X 159097020 159097039 CATCTTCGATCAGCTTCCTG 59 159097084 159099634 TCCACTCGGACTTAAGCTC 59 NA Rattus norvegicus 81 Mobp ENSRNOG00000018700 ENSRNOT00000025343 2 1 2 87 8 128842014 128842032 AGTACAGCATCTGCAAGAG 57 128842081 128846959 CTTCTCAATCTGGTCTTCTGG 58 NA Rattus norvegicus 81 Wdr48 ENSRNOG00000016942 ENSRNOT00000024172,ENSRNOT00000082356 1 2 2 80 8 128588743 128588846 CGCATAAGGACTATGTCAAGG 59 128588888 128588906 ATATCTGTCTGTCCAGCCC 59 NA Rattus norvegicus 81 AABR07041141.1 ENSRNOG00000061620 ENSRNOT00000080863 3 1 1 60 X 120521845 120521863 GGTAACGCAGTTTGTCGAG 59 120521803 120521824 TTTAACCAGCTGAATTGAGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syt13 ENSRNOG00000008000 ENSRNOT00000011459 2 1 1 93 3 81850253 81852160 TCTAGGCAAAGATGTCTCTGTC 60 81852214 81852232 GTTGATCTTGTGCTTGGCC 60 NA Rattus norvegicus 81 Myh10 ENSRNOG00000002886 ENSRNOT00000065895 1 1 1 80 10 55352461 55352481 AGGATAACTTTCAGGAGACCA 58 55352521 55352720 CGACTTTAAGCATTGAGAGGA 58 NA Rattus norvegicus 81 LOC100361934 ENSRNOG00000034182 ENSRNOT00000045705 2 1 1 60 X 42329200 42329218 CAAGTATAAGCCTGCACCC 58 42329158 42329178 GTCATACTCCACAGAGTCGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gnat2 ENSRNOG00000019296 ENSRNOT00000026237 2 1 1 80 2 210888869 210889322 AGTATGACGGCAACAATTCC 59 210889362 210889383 CATCTTTCCTCATGTTGAGGTC 59 NA Rattus norvegicus 81 Arhgap1 ENSRNOG00000016610 ENSRNOT00000067318,ENSRNOT00000079118 3 2 2 80 3 80573114 80573132 CTCTGTACATTGTGCACCC 59 80573173 80573348 GTCCAAACTTGAAACTGATGAG 58 NA Rattus norvegicus 81 LOC100910070 ENSRNOG00000018534 ENSRNOT00000025068 2 1 1 80 9 44531130 44531821 CCTGAGTTACTGTGGAGTCC 60 44531069 44531088 ATGGTGGGTTGGTATCTCAG 59 NA Rattus norvegicus 81 Snph ENSRNOG00000009588 ENSRNOT00000091811,ENSRNOT00000012727 2 2 2 81 3 147109080 147109099 GCAGAAGGAGGTTTGTATCC 58 147106443 147109036 GATCTCTGTGTCCCGATCC 59 NA Rattus norvegicus 81 Ccdc43 ENSRNOG00000002748 ENSRNOT00000003685 3 1 1 89 10 90648906 90650194 GACGAAGAGGATGAAGCAG 58 90646751 90646769 ATTGGTGTTTCGGAACAGG 58 NA Rattus norvegicus 81 Iscu ENSRNOG00000000701 ENSRNOT00000000890 3 1 1 121 12 48625883 48627154 TACCACAAGAAGGTTGTGG 57 48625780 48625798 AGTTTCATGACGTCACCAC 58 NA Rattus norvegicus 81 Aga ENSRNOG00000000108 ENSRNOT00000000120 3 1 1 82 16 41226899 41226922 TAATCCATAAGACGGGACATACTG 60 41225574 41226858 TGAGTCTCCTACACGACCA 60 NA Rattus norvegicus 81 Csrnp1 ENSRNOG00000033433 ENSRNOT00000083004,ENSRNOT00000050543 3 2 2 81 8 128661864 128662076 TAAATGCCAGATGGATCACAC 59 128661803 128661821 GAATTCCACTCGACCATGG 58 NA Rattus norvegicus 81 LOC100363125 ENSRNOG00000021470 ENSRNOT00000036543 2 1 1 60 X 13992122 13992143 CAGTTAACAAAGTAGAACGCCT 59 13992164 13992182 GAGGAGTTAGGGCATTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Samt2 ENSRNOG00000046569 ENSRNOT00000065084 1 1 1 60 X 21944973 21944993 AGGGTCAGCATAATCAAATCC 58 21944933 21944957 CTGAGCACTTGTAACATACTATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gata1 ENSRNOG00000047663 ENSRNOT00000075082 1 1 1 80 X 15279211 15279231 AATGCTTGTGGCTTGTATCAC 60 15279272 15280323 CTTGCTGACAATCATTCGCT 59 NA Rattus norvegicus 81 Vps25 ENSRNOG00000051179 ENSRNOT00000043754,ENSRNOT00000076944,ENSRNOT00000076658,ENSRNOT00000075857 2 4 5 82 10 89175112 89175130 AACAACGTCAAGCTACAGC 59 89175938 89176831 TCGAGGTTCCCTTTCTTCC 59 NA Rattus norvegicus 81 Ttc21a ENSRNOG00000034089 ENSRNOT00000043831 1 1 1 80 8 128654968 128655616 TGCAGTACAACAAGTCTTGC 59 128655659 128655677 CTGCGTCCTTGTATGACTG 58 NA Rattus norvegicus 81 Shox2 ENSRNOG00000012478 ENSRNOT00000016843 2 1 1 80 2 164121010 164121030 GTTTGAAGCTTGTAGAGTTGC 58 164119306 164120969 ACGTTGCAATGACTATCCTG 58 NA Rattus norvegicus 81 Sppl3 ENSRNOG00000001178 ENSRNOT00000001562 2 1 1 80 12 47290307 47291186 CCTCAGAATAAGATTTCCTTCGG 59 47290249 47290267 AAGCATGACTGACAGGGAG 59 NA Rattus norvegicus 81 Setd2 ENSRNOG00000020915 ENSRNOT00000087154,ENSRNOT00000028409 3 2 2 80 8 118827255 118827276 TAAAGATGAACGAGCTCAAGGT 60 118827313 118830159 CGAGAGGAACATTCAATCATGAG 60 NA Rattus norvegicus 81 Wls ENSRNOG00000036816 ENSRNOT00000055245,ENSRNOT00000080305 3 2 2 80 2 266402502 266414903 CTTCATTGTTAGTCAGGTGACAG 60 266414943 266414961 CCAGTGAAGAAAGCACTGC 60 NA Rattus norvegicus 81 RT1-DMb ENSRNOG00000051002 ENSRNOT00000087782 3 1 3 60 20 5231170 5231189 TGCCTGACAAACACTTTACC 59 5231129 5231150 GCAGGATGAATAGTAGAAACCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arfgap1 ENSRNOG00000043150 ENSRNOT00000013900,ENSRNOT00000055038,ENSRNOT00000082267 3 3 3 80 3 176479379 176479834 ACAGGACGAGAATAATGTTTGC 59 176479874 176479893 CAGATCCAGATGCCATAGGT 59 NA Rattus norvegicus 81 RGD1564173 ENSRNOG00000047496 ENSRNOT00000056621 2 1 1 60 X 142345048 142345066 GAGGAAGTATGAAGCCCTG 57 142345089 142345108 GTTTCTCATTTCACGTTGGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911393 ENSRNOG00000050465 ENSRNOT00000073677 2 1 1 60 X 119532668 119532687 CCTAACAGAAGACTGGTCCC 60 119532627 119532647 GCTGATAATGCTGAGACAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-DMa ENSRNOG00000047864 ENSRNOT00000080583 1 1 2 60 20 5241393 5241411 GGACACAGAAATGGCTTGG 59 5241351 5241371 AAGCATGTTTCCCATAAGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-DMa ENSRNOG00000047864 ENSRNOT00000080583 3 1 2 60 20 5241391 5241410 GACACAGAAATGGCTTGGAG 59 5241350 5241370 CAAGCATGTTTCCCATAAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfrsf11a ENSRNOG00000015615 ENSRNOT00000021129 2 1 1 80 13 25804232 25805123 GCGAACCAGGAAAGTACCT 60 25805166 25805185 AGTATTCATCTGGGCCACAG 60 NA Rattus norvegicus 81 Olr1584 ENSRNOG00000003498 ENSRNOT00000004643 3 1 1 82 13 92103265 92103283 TGGTTCAGTCAGATTCGGG 59 92103327 92122915 GCTGACATACCAGATTTCCAG 59 NA Rattus norvegicus 81 Wfdc6b ENSRNOG00000031823 ENSRNOT00000048654 3 1 1 87 3 161077090 161078031 GGAAACACAGTGTTCATATCAG 58 161078077 161078097 AGCAGCTTACAATAGACACTG 58 NA Rattus norvegicus 81 Slc5a1 ENSRNOG00000017775 ENSRNOT00000024165 3 1 1 80 14 82929269 82929290 GTAATTTACACAGACACCTTGC 58 82927965 82929229 TACTTCTCGGAAAGCAAACC 58 NA Rattus norvegicus 81 Pes1 ENSRNOG00000004515 ENSRNOT00000005996 2 1 1 80 14 84225991 84226012 GAAGGAAGGAGATTACATTCCC 58 84226053 84226472 TCTTCCAAGTTTCCTGGGT 59 NA Rattus norvegicus 81 Eif2d ENSRNOG00000004910 ENSRNOT00000006768 2 1 1 80 13 47937912 47937931 TCCCATCCTGATCTTCTACC 58 47937974 47938485 CAGCATCAAATCTGCTCCC 59 NA Rattus norvegicus 81 Ssrp1 ENSRNOG00000008825 ENSRNOT00000091901,ENSRNOT00000012022 1 2 2 80 3 72450761 72450912 AGATGTTCTTTGTGATCAGCC 59 72450953 72450972 TTGAGAAGAGGAGGATCAGG 58 NA Rattus norvegicus 81 Tpst2 ENSRNOG00000000664 ENSRNOT00000000831 3 1 1 82 12 50348847 50348865 GATCCGTACGCAAATCCAC 59 50346626 50348802 TAGTCTCCTTTCAAGACCCG 59 NA Rattus norvegicus 81 Cep112 ENSRNOG00000024557 ENSRNOT00000037067 2 1 1 80 10 96854224 96871612 GTGACATGAAAGAGCAGATGG 59 96871654 96871672 ACTCCTTGGACTGCTTCTC 59 NA Rattus norvegicus 81 LOC689065 ENSRNOG00000036641 ENSRNOT00000054848 1 1 1 107 1 219744617 219745331 ACAATACCAACAGCAGGTG 58 219744528 219744546 CTGTTGGTGTCCAACAAGG 59 NA Rattus norvegicus 81 Otol1 ENSRNOG00000021186 ENSRNOT00000035765 3 1 1 98 2 166857158 166862198 GACTGGACAACAAGGTCCT 59 166862260 166862278 TCTCCTTTCTGGCCTTTGG 60 NA Rattus norvegicus 81 Olr144 ENSRNOG00000016979 ENSRNOT00000022773 1 1 1 60 1 169247650 169247668 TCCTCCAATGCTCAATCCT 58 169247608 169247626 CAGCCTCCTACGAATCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhdds ENSRNOG00000014665 ENSRNOT00000020051 3 1 1 80 5 152223244 152225659 TTCAATAAGCTTGCTGAGACTC 59 152223185 152223205 CTCAATGCTGAACGCATAGAC 60 NA Rattus norvegicus 81 Socs3 ENSRNOG00000002946 ENSRNOT00000003940 2 1 1 60 10 106975444 106975462 ACCCTCCAGCATCTTTGTC 60 106975402 106975422 TCACTTTCTCATAGGAGTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909677 ENSRNOG00000038396 ENSRNOT00000058473 3 1 1 60 X 45615520 45615538 AAGCACTGGGAAACTTGGA 60 45615561 45615580 GTTGGTTGGTTTGCATAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012054.1 ENSRNOG00000049530 ENSRNOT00000074187 2 1 1 76 2 184230683 184230701 TTCATCCATTCACCACAGC 58 184230741 184230759 CACATTCCTTGGGACAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Has2 ENSRNOG00000004854 ENSRNOT00000006517 1 1 1 80 7 96442344 96453041 CGTGGATTATGTACAGGTGTG 59 96442284 96442306 TCTTCTAAGACCTTCACCATCTC 59 NA Rattus norvegicus 81 Bche ENSRNOG00000009826 ENSRNOT00000013279 2 1 1 90 2 171121780 171121798 AAACTCTAAACTCCGGGCT 59 171104581 171121730 CTCCCTTTCATCAATATCTCCTG 59 NA Rattus norvegicus 81 Tmem171 ENSRNOG00000015449 ENSRNOT00000089293,ENSRNOT00000020726 2 2 2 80 2 28798503 28798524 GAGATACCTCTGAAATCGAAGG 58 28794472 28798465 ATATTATCACTGAGTCACCCAC 58 NA Rattus norvegicus 81 Cdkn2aipnl ENSRNOG00000005024 ENSRNOT00000006708 3 1 1 85 10 37422886 37424949 GGTTGCAGTTACAATAAAGACC 58 37424995 37425013 CTTGTAAACTGTGGCAGGT 58 NA Rattus norvegicus 81 Olr1067 ENSRNOG00000049897 ENSRNOT00000049954 3 1 1 60 7 9393216 9393235 ATTCTGCTGGGATTCTGGAC 60 9393175 9393196 GCAAGAACAGTAAGAACAAGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rasl10a ENSRNOG00000008951 ENSRNOT00000080541 2 1 2 81 14 85311577 85312277 AGAAGTCTTGAGGAGTGGC 59 85312322 85312340 TGCAGATGTCGTAGACCAG 59 NA Rattus norvegicus 81 Glipr1l1 ENSRNOG00000026634 ENSRNOT00000039475 3 1 1 80 7 54837647 54853783 CATTATACACAGGTAGTCTGGG 58 54837588 54837608 CGAATATCCTGTGAGATGAGG 58 NA Rattus norvegicus 81 Stx17 ENSRNOG00000005801 ENSRNOT00000007641 3 1 1 80 5 63912835 63921017 TGTCCCTCCTAGTAAATTCTCAG 59 63921056 63921075 CTTCAACATTCACAGCAGCA 60 NA Rattus norvegicus 81 Taf13 ENSRNOG00000020315 ENSRNOT00000027530 2 1 1 80 2 211360902 211366160 TCTCTAAAGAACTGCGCTG 58 211366201 211366222 CTTCGAGAATATCCACTGACTC 58 NA Rattus norvegicus 81 RGD1564836 ENSRNOG00000026969 ENSRNOT00000038940 3 1 1 60 X 33349290 33349311 GCAGAAAGTTACCACAACTCAG 60 33349251 33349269 CTCCTCCAGTTTCTTGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnnc2 ENSRNOG00000015155 ENSRNOT00000020348 2 1 1 80 3 161244678 161244789 GATGATCGCTGAGTTCAAGG 59 161244617 161244635 GTACCCAGCTCTTTAACGC 59 NA Rattus norvegicus 81 Shisa5 ENSRNOG00000020667 ENSRNOT00000077236 3 1 2 72 8 117783317 117783335 AATACTGCTGCTCTGACGT 59 117783371 117789846 AATCTGGACTCTGGCTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Usp27x ENSRNOG00000002844 ENSRNOT00000003800 2 1 1 60 X 15989864 15989883 CGTACATTTCCTTCCCTCTG 58 15989906 15989924 GTCTCTTTACTCGACGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ino80e ENSRNOG00000019960 ENSRNOT00000027033 1 1 1 80 1 198297710 198297888 AGTTCCTCATTTACGAACACG 59 198297650 198297668 TGTCTCGGGAAACCTTCAG 59 NA Rattus norvegicus 81 Rnf170 ENSRNOG00000045943 ENSRNOT00000071258 1 1 1 80 16 70689754 70693177 CTATCTGTAGACAAACGGTAACTC 59 70689697 70689717 GACGCAATCTTACAACATCCT 59 NA Rattus norvegicus 81 AABR07030603.1 ENSRNOG00000050188 ENSRNOT00000074809 2 1 1 60 10 95434667 95434686 GACAATGGATGAAGTGCGAG 59 95434626 95434644 GATCTTCTTGTTGGTGGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxo17 ENSRNOG00000019942 ENSRNOT00000027006 2 1 1 81 1 86916685 86917427 TACATAGCTGACTGGTGGG 59 86917471 86917490 TTTCATGTTCGTCCAGTAGG 58 NA Rattus norvegicus 81 Mettl21cl1 ENSRNOG00000022762 ENSRNOT00000039313 1 1 1 81 9 51009218 51009238 TTTGCTGGTCATGAGATTCAG 59 51009281 51009992 AACATAGAACAAGGGCCGA 59 NA Rattus norvegicus 81 Fli1 ENSRNOG00000008904 ENSRNOT00000068037 2 1 1 80 8 33572978 33581619 GTTACCTCAGGGAAAGTTCAC 59 33572918 33572938 CTTCCTTGACATTCAGTCGTG 59 NA Rattus norvegicus 81 Rtn4rl1 ENSRNOG00000003121 ENSRNOT00000089856 1 1 2 68 10 62053947 62106111 ATTTCTGGAGGACACAGGG 59 62106143 62106161 CTCAGAGGTAGCTCTCCAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Syncrip ENSRNOG00000000204 ENSRNOT00000074515,ENSRNOT00000078891,ENSRNOT00000041655 2 3 3 80 8 96116016 96116037 TTGTGGGCTCTATTCCTAAGAG 59 96113271 96115976 CATCTGTGAGACCCTCTGTC 60 NA Rattus norvegicus 81 Tmco4 ENSRNOG00000017401 ENSRNOT00000023431,ENSRNOT00000088556 3 2 2 80 5 157445310 157446779 CATCAGTCAGGACCTCCTG 59 157460991 157461010 GTCACATGACAAACGAGGAC 59 NA Rattus norvegicus 81 Mon2 ENSRNOG00000004185 ENSRNOT00000005654,ENSRNOT00000077878 1 2 3 63 7 66717511 66717529 GCCTTGTCACTAGAATGCA 58 66727008 66727026 TTATTCCCGATTCAGCAGC 58 NA DesignNoJunction Rattus norvegicus 81 Prc1 ENSRNOG00000013057 ENSRNOT00000017532 3 1 1 80 1 142104001 142104021 AGTATGTTACAGAGCAGTGGG 60 142104060 142104268 GTCTCTTGTTCTTTAGTTGCCT 59 NA Rattus norvegicus 81 AABR07007931.1 ENSRNOG00000049977 ENSRNOT00000072751 2 1 1 77 2 35484888 35484908 GGGTTGATTTCTGCAAATCTG 58 35482773 35484851 TAGAGCATGAGAGCTTAAGGA 58 NA DesignNoJunction Rattus norvegicus 81 Exosc7 ENSRNOG00000060337 ENSRNOT00000084725 3 1 1 80 8 132210935 132219199 TTCTTTGTTGACTGTTCAGCC 59 132219241 132219259 ATTTGCAATCTCTGTGCCG 59 NA Rattus norvegicus 81 Tbc1d5 ENSRNOG00000010637 ENSRNOT00000014171,ENSRNOT00000083387 1 2 2 80 9 1545312 1545332 CTCCACCTGAGTCTAGTTGAC 60 1545368 1564770 CTGATAGTTACTAGAAATCAGAGCG 59 NA Rattus norvegicus 81 Pxmp2 ENSRNOG00000037446 ENSRNOT00000056680 3 1 2 99 12 52454501 52454519 TCTGGCCCAGATGATTGAG 59 52454582 52456682 ACCTGTGACAAACAACCCA 60 NA Rattus norvegicus 81 Ipo11 ENSRNOG00000039717 ENSRNOT00000072212 1 1 1 80 2 38013430 38013450 CGAGTCTTACTACAGAATGCC 58 38007016 38013393 CTGATCCATCTCCTGATTAAACTC 59 NA Rattus norvegicus 81 Cmtm6 ENSRNOG00000010951 ENSRNOT00000014585 2 1 1 97 8 122797239 122804782 ATTGCTGCAATTGTGTTTGG 59 122804842 122804860 TTTCTAAGAGGGCTCTCCC 58 NA Rattus norvegicus 81 Slc30a5 ENSRNOG00000018746 ENSRNOT00000025506 2 1 1 80 2 30816650 30816670 ATTGTAGCAGGGACAATTCAC 59 30816456 30816610 AAGTATTCCTGTAACCTGCTG 58 NA Rattus norvegicus 81 Mblac1 ENSRNOG00000001357 ENSRNOT00000001831 2 1 1 60 12 19336256 19336274 CGGAGATGTGACTCTGGTG 60 19336295 19336316 CCCTAGGTTCCCAATATGATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912399 ENSRNOG00000050275 ENSRNOT00000065473 2 1 1 80 2 43938679 43939322 CGCCTGAGGTACTAAGAGG 59 43938617 43938636 AGGCCATTTCTATAATGGCG 58 NA Rattus norvegicus 81 Nupr1l ENSRNOG00000000917 ENSRNOT00000001218 2 1 1 60 12 30303829 30303847 CTACGCACCAACTACACAG 58 30303787 30303805 TGAGCAGTATCTGTGCCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cldn4 ENSRNOG00000001476 ENSRNOT00000002003 2 1 1 60 12 24761793 24761811 GATTATGGTGCCTGTGTCC 58 24761835 24761853 CAGAGGGTTGTAGAAGTCG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pnrc2 ENSRNOG00000009248 ENSRNOT00000080069,ENSRNOT00000012258 3 2 2 81 5 154222068 154222514 AAAGCAGACTGAAAGGTGAC 59 154222006 154222027 CATTTCTAGATTGAGGGTCTGG 58 NA InUTR Rattus norvegicus 81 Mmab ENSRNOG00000049426 ENSRNOT00000072511 3 1 1 88 12 47927275 47927293 TCACGGGAGAAAGAAGACC 59 47927345 47927897 CATGGCAAACCCAATAGCC 60 NA Rattus norvegicus 81 Cnr2 ENSRNOG00000009260 ENSRNOT00000074998 2 1 2 88 5 154266106 154266125 TTACAGAGACAGAGGCTGAG 59 154266176 154266410 GAAAGACAGGCCGTATCAG 58 NA InUTR Rattus norvegicus 81 LOC100911649 ENSRNOG00000022798 ENSRNOT00000029573 1 1 1 80 16 12977331 12977351 CTGCATTTCTGTCCACATACC 59 12977391 12978047 TGAAGTGTGAATACCTCAGGA 59 NA Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000011226,ENSRNOT00000090161 3 2 4 81 8 39182117 39184017 TTCCGGCTTTCTAAGGGTG 60 39182054 39182072 TGCTCACGATATCGCTGAG 60 NA Rattus norvegicus 81 Fat1 ENSRNOG00000030954 ENSRNOT00000081023,ENSRNOT00000067486 1 2 2 80 16 50390321 50390339 TCCATTCACAATCGACCCT 59 50388779 50390278 AGCGTATAACCTGAGATCGT 58 NA Rattus norvegicus 81 Kif15 ENSRNOG00000060356 ENSRNOT00000089278 3 1 1 80 8 132057730 132062797 GCCTACCAGGTCTTATCTAGAG 59 132062835 132062856 ATGAGACCTGGAAGATTCTCTG 59 NA Rattus norvegicus 81 Mir6329 ENSRNOG00000047361 ENSRNOT00000071369 1 1 1 60 8 56629658 56629676 GTTTGCAATGTGACTCAGC 58 56629616 56629634 AGAGTGACTCAGCTGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr49 ENSRNOG00000015444 ENSRNOT00000020699 2 1 1 60 1 168028472 168028491 TCTCCTATGTCCACTTCCTG 58 168028431 168028452 ATCTTGACACTGTAGAGAACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000089721,ENSRNOT00000091105,ENSRNOT00000077205,ENSRNOT00000077561 3 4 8 60 20 4363855 4363873 TAACAGGCTTGGGAAGGAG 59 4363896 4363915 GGAACCCTTACGGTAGACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mirlet7g ENSRNOG00000050242 ENSRNOT00000072553 3 1 1 60 8 114874472 114874491 AGTTTGTACAGTTTGAGGGT 57 114874513 114874532 GTGGCCTGTACAGTTATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sass6 ENSRNOG00000015211 ENSRNOT00000067324 1 1 1 80 2 219643453 219647013 CCTTGCAGACACAAGTTCAG 60 219647054 219647074 GGATATTTCGTTGATGGAGGG 59 NA Rattus norvegicus 81 Izumo1 ENSRNOG00000024678 ENSRNOT00000033278 2 1 1 80 1 101607171 101607522 TTACAGTTTCTACAGGGTTTGG 58 101607562 101607581 ATCGTCTTGGTCAGGTAAGG 59 NA Rattus norvegicus 81 RGD1561161 ENSRNOG00000039582 ENSRNOT00000085826,ENSRNOT00000060673 1 2 2 80 2 45216115 45229981 CAATGTCTGGTCAGTGAAGG 59 45230023 45230042 TGTGAAGGAGTCTTCTGAGG 59 NA InUTR Rattus norvegicus 81 RGD1561161 ENSRNOG00000039582 ENSRNOT00000085826,ENSRNOT00000060673 3 2 2 80 2 45192571 45192589 TGTTTGTGACCGTTGAGTC 58 45192633 45206818 CAGAATTCACCCACACCTG 59 NA InUTR Rattus norvegicus 81 Lsm1 ENSRNOG00000015375 ENSRNOT00000020721 1 1 1 80 16 71051106 71052472 TCAATTTGCTAACCTAGTGCTC 59 71051047 71051066 ATCCCTCGAGGAATATCACC 59 NA Rattus norvegicus 81 Larp6 ENSRNOG00000012438 ENSRNOT00000017147 3 1 1 80 8 65625257 65625275 TTTCTGCTCAAGCATGTGC 60 65625317 65630883 GTGTTTCACCTTCTTGAAGGA 59 NA Rattus norvegicus 81 Twf2 ENSRNOG00000048915 ENSRNOT00000074683 3 1 1 89 8 114906780 114906798 AGAAGCACCTGTCATCCTG 59 114906848 114906982 CAGTCTTCACCTCATTGATTCG 60 NA Rattus norvegicus 81 RGD1305420 ENSRNOG00000009492 ENSRNOT00000012602 1 1 1 80 5 61992860 61994374 TTCAGGAGGTGCTAGTCAG 58 61992798 61992816 GACAGCATAGCCTCAATGG 58 NA Rattus norvegicus 81 Olr352 ENSRNOG00000054590 ENSRNOT00000087890 3 1 1 60 1 230011501 230011519 AGCCTCTACGTTATGCCAC 60 230011540 230011561 CAGACAATAACTAGACCCACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhx29 ENSRNOG00000010369 ENSRNOT00000013854 2 1 1 80 2 44824321 44824720 TATCTCGGGTGGAAGAAAGC 60 44824761 44824781 TCTGTTGAGGAAGTTCCTCTG 60 NA Rattus norvegicus 81 Slc30a7 ENSRNOG00000013912 ENSRNOT00000019172 1 1 1 80 2 218937574 218937592 TACTGCCATATTGGCTGGA 59 218934777 218937535 CTAACATACCCATAAGAGAAAGCG 60 NA Rattus norvegicus 81 B3gnt1 ENSRNOG00000046904 ENSRNOT00000074972 1 1 1 70 1 220323978 220324239 TTCAATCGAATCAGCCAGG 58 220324273 220324291 AAACCTTCGTTCAGCACCT 60 NA DesignNoJunction Rattus norvegicus 81 Gzma ENSRNOG00000010603 ENSRNOT00000014134 1 1 1 80 2 44973981 44981379 CTAATTCCTGAAGGTGGCTG 58 44973920 44973940 AAGTAGAACCATGTATGGCCT 59 NA Rattus norvegicus 81 Golga4 ENSRNOG00000029910 ENSRNOT00000078625,ENSRNOT00000087753,ENSRNOT00000051290 2 3 3 80 8 127233205 127234467 GCCAAGGACAGTGTTACAG 59 127234663 127234681 CTTCAGCTTGGAATCGCTG 59 NA Rattus norvegicus 81 Adrm1 ENSRNOG00000055984 ENSRNOT00000091941 2 1 1 86 3 175548726 175548744 TCGTGTACATCCAGCAGAC 60 175548792 175549429 TAATCAAGTCATCCTCCACGG 60 NA Rattus norvegicus 81 Parp8 ENSRNOG00000010824 ENSRNOT00000060595,ENSRNOT00000073847 3 2 2 80 2 49105211 49109251 GAGAAATGACACAGGCACC 59 49105149 49105167 ATTGCAGAAGTGGATGAGC 58 NA Rattus norvegicus 81 Cyp21a1 ENSRNOG00000000428 ENSRNOT00000031548 1 1 2 80 20 4487971 4488090 TCCCTTTCTCAGGTTCTTCC 59 4487910 4487929 TGCATTACGATATGGTCCCT 59 NA Rattus norvegicus 81 Cnksr1 ENSRNOG00000022838 ENSRNOT00000031225 3 1 1 80 5 152452034 152452184 GTGGACAGACTCTACCTCC 59 152451972 152451992 GCTGTTTCTTCTGGAAGAGTG 59 NA Rattus norvegicus 81 C4a ENSRNOG00000000443 ENSRNOT00000086027 1 1 1 80 20 4496872 4497549 ACCTTAAAGATCCTTCGTACCT 59 4496813 4496831 GACCGTCACTTCTATCCGA 59 NA Rattus norvegicus 81 Trak1 ENSRNOG00000019262 ENSRNOT00000026106 2 1 1 80 8 130062887 130062906 GAAAGAGTTGGCCAGATGAC 59 130062949 130074570 CAAATCCCGCTCTTTCTCC 59 NA Rattus norvegicus 81 Gpsm3 ENSRNOG00000000441 ENSRNOT00000000510 2 1 1 83 20 4355578 4355815 AAGATGGTGAGCAGAGTCTC 59 4355861 4355879 GAGGTGCAGATCTCCAAGG 60 NA Rattus norvegicus 81 RGD1561520 ENSRNOG00000022407 ENSRNOT00000037130 2 1 1 90 2 52171512 52171533 ACTTACTTCTCTATCGGTTTCC 57 52171321 52171461 TTTCCTCCGCCAATTTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Pltp ENSRNOG00000016488 ENSRNOT00000022594 1 1 1 80 3 161319180 161319201 TTAAAGTGTCCAATGTCTCCTG 58 161317754 161319142 TATACATCCTCCTGAAGGTTCC 59 NA Rattus norvegicus 81 Tpbg ENSRNOG00000010694 ENSRNOT00000014326,ENSRNOT00000089491 3 2 2 60 8 93494323 93494344 AGAAGTGGATGCATAACATCAG 59 93494361 93494383 CTGTAATGATACCCTTCCATGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnn3 ENSRNOG00000011559 ENSRNOT00000015579 2 1 1 80 2 225005342 225028166 GAGGTCAAGAACAAGATCGC 59 225028208 225028227 GCCTGTCACCTCTTCTATCC 60 NA Rattus norvegicus 81 Trim71 ENSRNOG00000030098 ENSRNOT00000047198 1 1 1 110 8 122556268 122566995 CCATTCAGCTGAGCATTGAG 59 122556177 122556195 GAGCTTTCTTGTGTCTCGC 59 NA Rattus norvegicus 81 Shb ENSRNOG00000011503 ENSRNOT00000015338 3 1 1 80 5 61037264 61076947 TCAGAAAGACAAGGTGACCA 59 61037203 61037222 TTTCCTGCTTTGCTCTTGAG 59 NA Rattus norvegicus 81 Neo1 ENSRNOG00000006490 ENSRNOT00000009496 2 1 1 80 8 63690910 63690930 TCTCACAGTCAATGGTACAGG 60 63689914 63690871 ACACGAGATTCATCTAGGTCAC 60 NA Rattus norvegicus 81 Rasef ENSRNOG00000024190 ENSRNOT00000058893 2 1 1 80 5 90466637 90466658 GGGAATACAATTTCTAGCAGCA 59 90466698 90469483 AGAATGGGATGACCTATCGT 58 NA Rattus norvegicus 81 C2cd4b ENSRNOG00000009106 ENSRNOT00000012048 3 1 1 102 8 73593648 73593666 GAAGGAGTCGCTCTTCCTC 60 73593732 73593750 GAGCTCAGAATCTGAGGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defb12 ENSRNOG00000038155 ENSRNOT00000044094 3 1 1 63 16 75120348 75120368 TTGTAGTTGAACTGCCATCAG 59 75118126 75119965 CCTCCTGGAAATGACTGGG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07045621.1 ENSRNOG00000049150 ENSRNOT00000073994 1 1 1 60 20 53776450 53776469 CCTCAAGTGTACAAGTGGGA 59 53776409 53776430 GTTTGTTTAACTTCTGCTGTCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Unc5d ENSRNOG00000011858 ENSRNOT00000085659,ENSRNOT00000015879 1 2 2 80 16 67484484 67485322 GTGGTCTACGTGAATGGAG 58 67485366 67485384 TTTCTGCCATCCTCTACCA 58 NA Rattus norvegicus 81 Olr1704 ENSRNOG00000048262 ENSRNOT00000073732 2 1 1 60 20 1012240 1012260 CTGAAGCACCTTTCCATTCTG 60 1012279 1012300 CAACATACTGAGGAACTGTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1709 ENSRNOG00000050354 ENSRNOT00000044130 1 1 1 60 20 1185478 1185496 ATGTAGCTGTTTGCCTTCC 58 1185520 1185538 CACCTACACTTTCTGGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam206a ENSRNOG00000010532 ENSRNOT00000014053 3 1 1 81 5 73556309 73556328 TTTCTAACAGAGCTTGCACC 59 73556367 73556510 GACCTCTAATACAGCTAGATATGG 58 NA Rattus norvegicus 81 Defb10 ENSRNOG00000038148 ENSRNOT00000058059 1 1 1 80 16 75198326 75208182 TATGACACTCCAGTTGTTGG 58 75198265 75198283 GAACCCTTCAAAGAGTCGG 58 NA Rattus norvegicus 81 LOC100910944 ENSRNOG00000019823 ENSRNOT00000026856 2 1 1 83 3 151688511 151688529 AAGATGGGCTTTGTCATGG 58 151688576 151689612 CATTCCGATCCTGAGACAG 57 NA Rattus norvegicus 81 LOC100361664 ENSRNOG00000001220 ENSRNOT00000001635 2 1 1 60 20 11626614 11626632 CCTCCTGTCAGTCATCTGG 59 11626572 11626590 ATAGGTTTGCAGACCAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defb2 ENSRNOG00000038147 ENSRNOT00000058056 2 1 1 77 16 75227604 75241243 GTTGCTGGAATTCTAGGACC 58 75227546 75227566 ATTGAGACAGAACCCTTTCTC 58 NA DesignNoJunction Rattus norvegicus 81 AABR07072805.1 ENSRNOG00000047265 ENSRNOT00000071389 3 1 1 60 20 999249 999270 GTTATTCATGGCTTCTTTGGTG 58 999289 999311 CCCATATGATACCAAGATGAGTG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1309730 ENSRNOG00000037567 ENSRNOT00000056935 3 1 1 80 3 91100382 91122610 AGATGAACAAGGATTGGATGG 58 91100322 91100340 CAGCAGGAACATAAGCAGG 59 NA Rattus norvegicus 81 Fam166a ENSRNOG00000010019 ENSRNOT00000013335 1 1 1 80 3 2439679 2439697 CTTCAGCAAATCCAAGCCA 59 2439738 2439857 GGTTTCAGATTGGTATAGTGGG 59 NA Rattus norvegicus 81 Defb5 ENSRNOG00000038126 ENSRNOT00000058030 3 1 2 64 16 75599458 75599479 GGATCCATTACCTTCTCTTCTC 58 75589653 75599434 TTTGCTAAAGGCAGAAAGGG 59 NA DesignRelaxed Rattus norvegicus 81 Invs ENSRNOG00000008632 ENSRNOT00000011622 1 1 1 80 5 64175143 64175981 GATCTACGGTTGTTCTCAGG 58 64176023 64176042 GAACTGAGATGAAGCACAGG 59 NA Rattus norvegicus 81 Zhx3 ENSRNOG00000027988 ENSRNOT00000091208 2 1 2 93 3 156775222 156775240 GAACAGTGAAGCATGGGAG 59 156774313 156775165 GTCTGTATCGAGCTGACGT 59 NA DesignNoJunction Rattus norvegicus 81 Zhx3 ENSRNOG00000027988 ENSRNOT00000032588 3 1 2 97 3 156775224 156775242 GAGAACAGTGAAGCATGGG 59 156765491 156775163 CAGTCTGTTTCGAGCTGAC 59 NA Rattus norvegicus 81 Rapgef4 ENSRNOG00000001516 ENSRNOT00000010630 1 1 1 80 3 58709059 58802594 GCACTATGGGAGAAATACCGA 60 58802635 58802654 ATTGTTAGAGCCCGTTTCCA 60 NA Rattus norvegicus 81 AABR07050407.1 ENSRNOG00000025261 ENSRNOT00000045406 2 1 1 100 5 164033209 164059613 GGATGCAGGGTTTCTTAACC 59 164059675 164059694 TACATCCATGTACAGTGCCC 60 NA InUTR Rattus norvegicus 81 Cdc26 ENSRNOG00000029785 ENSRNOT00000040894,ENSRNOT00000087648 3 2 2 62 5 78262702 78262721 AGCTCGATGACATTGAGGAG 60 78254611 78262677 TCTGTTTCTTACGGGCCTC 59 NA DesignRelaxed Rattus norvegicus 81 Eya2 ENSRNOG00000019203 ENSRNOT00000087530,ENSRNOT00000030119 2 2 2 84 3 162368310 162371015 CTCTTTGCGAAGTCTCACC 59 162371063 162371081 CTGTGCTGTACTGTGTCTG 58 NA Rattus norvegicus 81 Oog1 ENSRNOG00000027142 ENSRNOT00000083634,ENSRNOT00000046115 3 2 2 80 5 162246457 162246475 AACCTGGACTCTTTGAAGG 57 162246519 162247055 GAGTTTGCACCTACTGGAG 58 NA Rattus norvegicus 81 Srsf10 ENSRNOG00000007992 ENSRNOT00000064925 3 1 1 80 5 154212744 154212766 TATGAAAGGAGGAGATCAAGGAG 59 154212804 154213153 AGTCGGTCTACTGTTTCTAGG 59 NA Rattus norvegicus 81 Upf3a ENSRNOG00000017397 ENSRNOT00000066521 1 1 1 80 16 81524623 81524642 GCTCCATTCCAGAAGATTGC 59 81524685 81524819 ATACTCTGGGTCGTCTTCG 59 NA Rattus norvegicus 81 Syf2 ENSRNOG00000060597 ENSRNOT00000091494 3 1 1 91 5 153269938 153272650 TCTGAAGCGGAATGAAGCT 59 153272705 153272723 TCTTGGCTTCCCAGTTAGC 60 NA Rattus norvegicus 81 Rrbp1 ENSRNOG00000005958 ENSRNOT00000055602 3 1 1 80 3 138061781 138061799 AGTGTGGAGGAAGAAGAGC 59 138061628 138061739 CACTGTAAACCGTGACTTCTG 59 NA Rattus norvegicus 81 Adprhl1 ENSRNOG00000019504 ENSRNOT00000026392,ENSRNOT00000057740 3 2 4 82 16 81627234 81627256 ATCAGAGAAGACTCAGAAGTCAC 60 81627294 81627460 CTCCATTTCTTGTAGGTCTTGTC 59 NA Rattus norvegicus 81 Adrb3 ENSRNOG00000012674 ENSRNOT00000016907 3 1 1 160 16 69005100 69005118 TCAACCCGCTCATCTACTG 59 69005242 69005654 GCCATCAAACCTGTTGAGC 60 NA Rattus norvegicus 81 Birc7 ENSRNOG00000043311 ENSRNOT00000068252 3 1 1 63 3 176441401 176441421 CTTTGTGGAAAGAATCCAGGC 60 176441446 176441547 CTGTTCTTCCCGTTGTTCC 59 NA DesignNoJunction Rattus norvegicus 81 Ntsr1 ENSRNOG00000028708 ENSRNOT00000039780,ENSRNOT00000082073 2 2 2 90 3 176042860 176043910 TGGACTACGTTCCTCTTCG 59 176043964 176043982 AGAGGATGGGATTGATGGC 59 NA Rattus norvegicus 81 Spag11a ENSRNOG00000013957 ENSRNOT00000018741 1 1 1 83 16 75666711 75668089 GGTCCAAAGAAACTCAGGG 58 75666646 75666664 ATGAAGAGCCTACAGTGGC 60 NA DesignNoJunction Rattus norvegicus 81 Wfdc5 ENSRNOG00000013760 ENSRNOT00000018386 1 1 1 80 3 160569109 160569128 AAACAGTGTCCCTCTTCCTG 60 160568957 160569067 GCCCAGCTTTACAAAGACTC 59 NA Rattus norvegicus 81 Slmo2 ENSRNOG00000046644 ENSRNOT00000075573 3 1 1 81 3 172570793 172570813 CCATTGTGAAGTCTGTAAGTG 57 172569544 172569732 CCCATAAATCCATCATGCAC 57 NA Rattus norvegicus 81 LOC499843 ENSRNOG00000032177 ENSRNOT00000040741 3 1 1 80 3 90721217 90723087 GTGTAGAGGTTGACAAACCAC 59 90721157 90721178 ACTCATATCTGGCTCTTGTCAG 60 NA Rattus norvegicus 81 Wfdc2 ENSRNOG00000014739 ENSRNOT00000019804,ENSRNOT00000039664 1 2 2 80 3 161021665 161024019 CACCCAAATTCTGAGCTTCAG 60 161024061 161024079 GACACCAGAATGCATGGTC 59 NA InUTR Rattus norvegicus 81 Dgkz ENSRNOG00000017737 ENSRNOT00000024280,ENSRNOT00000091265 3 2 2 80 3 80855012 80855309 CTGTGGACTGGAGTGAGTC 59 80854950 80854969 CGACATAGCAGAAATCTCCG 59 NA Rattus norvegicus 81 Lamp1 ENSRNOG00000019629 ENSRNOT00000026580 3 1 1 85 16 81691005 81691108 TTCCTGATGCCATAGAGCC 59 81690938 81690956 GCACTTGTATGAGTTGCCG 60 NA Rattus norvegicus 81 Letm2 ENSRNOG00000026180 ENSRNOT00000066144,ENSRNOT00000030489 2 2 2 80 16 71253380 71253399 CTTCGGCACAAACAATTTGC 60 71253439 71254569 TTGGCAATGACTTCATCATCTG 59 NA Rattus norvegicus 81 Prr5l ENSRNOG00000004666 ENSRNOT00000006291 1 1 1 80 3 91310420 91316913 TTTATCCGGTTCAGGGACAG 60 91310359 91310377 TCACCTTCAGCAAGACCAG 60 NA Rattus norvegicus 81 Il36b ENSRNOG00000043323 ENSRNOT00000067207 2 1 1 80 3 1367406 1367426 GGAATCAAAGGCAGAAGTCTC 59 1366496 1367367 GATGTCTACATCCTTAAGCTGC 59 NA Rattus norvegicus 81 Kcnb1 ENSRNOG00000046949 ENSRNOT00000074023 3 1 1 97 3 163935118 163935136 GAGTTTGACAACACGTGCT 59 163853543 163935057 ATGATGGCCAGGATCTTGG 60 NA Rattus norvegicus 81 Atp7b ENSRNOG00000012878 ENSRNOT00000058072,ENSRNOT00000089265 3 2 2 80 16 74913974 74915848 CATCGAACTGATTATCACAGGG 59 74915888 74915907 ATGCCATTTGTCCTTGTGAG 59 NA Rattus norvegicus 81 Defb39 ENSRNOG00000034275 ENSRNOT00000040406 3 1 1 81 16 75042633 75046166 CAGATCAACTCAGTGTCTGG 58 75046210 75046228 AATATGGGCATCGGATGGT 59 NA Rattus norvegicus 81 AABR07026002.1 ENSRNOG00000022358 ENSRNOT00000045197 2 1 1 60 16 58791175 58791193 ACATAGCATGTCACCACAG 58 58791213 58791235 TCATCTTTCTCCATCCTTACCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam83d ENSRNOG00000015794 ENSRNOT00000021308 3 1 1 111 3 155269748 155269766 TGTCGAGGCTCATTTCCAG 60 155269839 155281688 CATTACCACAGCAATCACCTC 59 NA Rattus norvegicus 81 Cers2 ENSRNOG00000021138 ENSRNOT00000028699 3 1 2 81 2 196494760 196494779 CAGATGCTCCATGTCTTCTG 59 196494820 196495005 GTTCATCTTCTACCAGCTTTCC 59 NA Rattus norvegicus 81 Megf6 ENSRNOG00000000156 ENSRNOT00000055386,ENSRNOT00000091417,ENSRNOT00000000169 1 3 3 139 5 171571048 171616778 CTTGTGAACACTCTTGCCC 59 171616881 171616899 CTTCTCACAGAACTGGCCA 60 NA Rattus norvegicus 81 Dnajb4 ENSRNOG00000013011 ENSRNOT00000086878,ENSRNOT00000017381 2 2 2 82 2 257396039 257397278 GTTTACGGGAGGCATTGTG 59 257395975 257395996 GATGTCAGTGACTGACATAGGT 60 NA Rattus norvegicus 81 Iqsec2 ENSRNOG00000058975 ENSRNOT00000085263,ENSRNOT00000080331,ENSRNOT00000079802 1 3 5 92 X 22286012 22286031 CTCTATGAGGTGCCAGATCC 60 22286086 22288508 TTTGGTGACCACAAGGAGG 60 NA Rattus norvegicus 81 Osmr ENSRNOG00000033192 ENSRNOT00000040847 2 1 2 81 2 56123074 56123092 ACATCTCAGCCAACAACAG 58 56121600 56123029 TGGACCTTCTCATGTCCAG 59 NA Rattus norvegicus 81 Exosc8 ENSRNOG00000051623 ENSRNOT00000081705,ENSRNOT00000086214 2 2 2 80 2 143926240 143926722 TGTGTTTGATGACACTTTGC 58 143926179 143926200 ATTACTACGGTTAAGGTTCCTG 58 NA Rattus norvegicus 81 Fam3a ENSRNOG00000060623 ENSRNOT00000091147,ENSRNOT00000079378 3 2 2 82 X 156326262 156326280 CTCTTGAAGTTCATCCGGC 59 156326324 156326427 TCATTCATCTTGGTAGCTGGA 59 NA Rattus norvegicus 81 Rnpc3 ENSRNOG00000017310 ENSRNOT00000088533,ENSRNOT00000087714,ENSRNOT00000023366 1 3 3 82 2 216500163 216500181 TACCAGACGAGGATGAGGA 59 216494933 216500119 TTTGTTCATTCTCTGTCGGTC 59 NA Rattus norvegicus 81 Cbln3 ENSRNOG00000020503 ENSRNOT00000090228,ENSRNOT00000027794 1 2 2 97 15 34550060 34550389 ATCTACTTCGACCAGGTGC 59 34549981 34549999 AATCGGAAGCTGTAGACCC 59 NA Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000052176 3 1 5 121 X 26444634 26444652 CATTCTTCCTGAGCTGCCT 60 26448509 26450396 TTTCCATGTTAAGCGGATGC 59 NA Rattus norvegicus 81 Smn1 ENSRNOG00000018067 ENSRNOT00000024456 1 1 2 80 2 30363117 30363138 AAACCTATCTGATCTGCTTTCC 58 30363178 30363407 ACTTGGCTTTCATTCTCCTG 58 NA Rattus norvegicus 81 Arhgef12 ENSRNOG00000008924 ENSRNOT00000081007 3 1 2 125 8 47260904 47261434 GAGAGCTGTGAACATTGTAGG 59 47259964 47259984 GTAACTTTCCTCCACCTTCTG 58 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000064593 2 1 6 80 1 76470299 76470878 GAGTACTCTAACTTCAAGCCTG 58 76463702 76463722 GAAGCAAACATATAGGTGGGT 58 NA Rattus norvegicus 81 Slc26a7 ENSRNOG00000006096 ENSRNOT00000088165 3 1 2 80 5 28092436 28092454 GCTTATCGGAGTTTGAGCT 58 28063538 28092392 ACATGACCAGCTGAATCAC 58 NA Rattus norvegicus 81 Slc6a9 ENSRNOG00000019484 ENSRNOT00000085527 2 1 2 87 5 136683691 136690060 CCAGAACAGAATGGTGCTG 59 136690111 136690129 CAAACTCGATCTGGTTGCC 59 NA Rattus norvegicus 81 Unc93b1 ENSRNOG00000017703 ENSRNOT00000024018 3 1 2 80 1 219174118 219174136 ATGCTGATGGGTATCAACG 58 219174177 219176181 GGACATTAGTACCTTAGGTCTG 58 NA Rattus norvegicus 81 B4galt7 ENSRNOG00000021886 ENSRNOT00000036223,ENSRNOT00000083492 2 2 2 81 17 9552700 9554383 GGATCACTTCAGGTTCAATCG 59 9552639 9552657 CATGGCGATGTAGTCTGTG 58 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000068553 2 1 6 80 17 84174981 84175001 CCATTTCTGATCCTCTTGAGC 59 84171280 84174941 TTGGCTCTTTATACTGGAACCT 59 NA Rattus norvegicus 81 Zcchc2 ENSRNOG00000002882 ENSRNOT00000003870,ENSRNOT00000086167 1 2 3 80 13 26010247 26010265 ACAATTGTGGTGTAAGCGG 59 26010309 26012968 GTCTGTAAGTGCCTTGCTG 59 NA Rattus norvegicus 81 Slc6a18 ENSRNOG00000016253 ENSRNOT00000022346 2 1 2 80 1 32233322 32233342 CTGAATCTGATCATCTTCGCC 59 32233384 32233611 AATGTCATCACAGAACCGC 59 NA Rattus norvegicus 81 Asph ENSRNOG00000007445 ENSRNOT00000083779 3 1 3 80 5 22633502 22633523 TACAATGTGAATGGTCTGAAGG 59 22617550 22633465 CTCTAAAGACTTCACTAGCTCTG 58 NA Rattus norvegicus 81 Agbl1 ENSRNOG00000022610 ENSRNOT00000083590 3 1 2 81 1 138345434 138472762 CCTATCAGGGTCTACAGTTCG 60 138472804 138472823 AGTTCCAAGATGAGCAGACC 60 NA Rattus norvegicus 81 Lhfpl4 ENSRNOG00000007727 ENSRNOT00000010347 1 1 1 72 4 145145930 145145948 TCTACAAGATCTGCGCCTG 60 145121717 145121735 TCAGGGAAGATCATGCAGC 60 NA DesignNoJunction Rattus norvegicus 81 Gimap5 ENSRNOG00000008416 ENSRNOT00000059156 1 1 3 115 4 78382321 78383622 ACTATAGTTGAAGGGACTCTGTG 59 78383697 78383715 GTTCCTCAAAGCCATGGTC 59 NA InUTR Rattus norvegicus 81 Prl7b1 ENSRNOG00000016742 ENSRNOT00000088868,ENSRNOT00000022447 2 2 2 80 17 39160773 39161327 TGCCAAGAAGGTTAAACATGG 59 39161368 39161387 TTGGTTGACTGTAACGATGC 59 NA Rattus norvegicus 81 F12 ENSRNOG00000015139 ENSRNOT00000066586 3 1 2 95 17 9741299 9741317 TGAGAGTCACGACATGCTG 60 9741375 9741496 TGATTACGGGTCGAGTTGTC 60 NA Rattus norvegicus 81 Cnksr2 ENSRNOG00000007014 ENSRNOT00000009802 2 1 2 94 X 39948656 39951444 ACTTTAAAGGCCAGAGAAGG 58 39951501 39951519 ATCTGCTTCCATTGTTGGA 57 NA Rattus norvegicus 81 Lca5 ENSRNOG00000009580 ENSRNOT00000044931,ENSRNOT00000090139 3 2 3 80 8 90934444 90934464 CAAGAAGGAAAGTACAGCGAC 59 90932338 90934405 TCTTTCCCATTCACATTCAGAC 59 NA Rattus norvegicus 81 Adgrb1 ENSRNOG00000029450 ENSRNOT00000076127,ENSRNOT00000015578 1 2 5 83 7 115823272 115825578 TAGATCAGTGCTGAACAAAGAC 59 115825622 115825640 TCTTCAGGCAGTGATGGTC 59 NA Rattus norvegicus 81 MGC116197 ENSRNOG00000033341 ENSRNOT00000046852,ENSRNOT00000089904 2 2 2 87 9 9142231 9142252 CAGAAGTGTAAATTCGAGAGGG 59 9141179 9142183 ATTCGACATCCAGCCTGAG 60 NA Rattus norvegicus 81 Ankrd6 ENSRNOG00000007110 ENSRNOT00000088179,ENSRNOT00000081748 2 2 3 80 5 48057255 48058371 AAACGTCAGATGTCATTGGTG 59 48057195 48057213 TCCCGAAAGTCTCAACTCC 59 NA Rattus norvegicus 81 Kcnq1 ENSRNOG00000020532 ENSRNOT00000087153 3 1 4 92 1 216566192 216575289 GGAAGACAAGGGAGACCAG 59 216575344 216575363 GCCTCGTATTCCTCTTCCTC 60 NA Rattus norvegicus 81 Abcg1 ENSRNOG00000001158 ENSRNOT00000001533,ENSRNOT00000083505,ENSRNOT00000078031 2 3 3 85 20 9749957 9776141 AGGAAGAAAGGATACAAGACCC 60 9776187 9776205 CCAGAAGGACCCATGATGG 60 NA Rattus norvegicus 81 LOC361635 ENSRNOG00000016063 ENSRNOT00000050393 1 1 2 82 1 188503092 188503112 CCATTTCTGGACATGTTCCAG 59 188503155 188510282 GTGAGAGCGTTGATAAAGGC 59 NA Rattus norvegicus 81 Arhgap26 ENSRNOG00000013920 ENSRNOT00000090882 1 1 2 80 18 31812385 31820030 CGATAATGTTCACCCGTCTC 59 31812324 31812342 TAGTTCTCTGGGATGAGGC 58 NA Rattus norvegicus 81 Ranbp17 ENSRNOG00000005042 ENSRNOT00000059895 3 1 2 87 10 18359776 18359797 ATAGAACTTGCAGTTCTCTGGT 60 18250390 18359728 GGGCATACACCTTTGAGGT 60 NA Rattus norvegicus 81 Esrp1 ENSRNOG00000008184 ENSRNOT00000010846 3 1 2 80 5 24583795 24589345 TTCCAAGGTTACCAGTATGC 58 24583734 24583753 AACCCATTCTTTGGGTAGAG 57 NA Rattus norvegicus 81 Atxn7l4 ENSRNOG00000010415 ENSRNOT00000076183,ENSRNOT00000014054 3 2 4 81 6 52667460 52667478 AGATGGGATCGATTTCGCT 59 52667523 52671506 CAGGAGGGATCTTCTTCCA 58 NA Rattus norvegicus 81 Phf2 ENSRNOG00000016816 ENSRNOT00000087692 3 1 2 184 17 16242408 16242427 ACATCGACATTTACCACTGC 59 16245931 16249313 CACCACATCTTCAGCACTG 59 NA Rattus norvegicus 81 Hnrnpu ENSRNOG00000033790 ENSRNOT00000078061,ENSRNOT00000044477 2 2 2 80 13 96232928 96233088 GAAGAAGGATTGTGAAGTTGTG 58 96232869 96232889 TCAGCTGCATGTTTAGTAACC 59 NA Rattus norvegicus 81 Gspt1 ENSRNOG00000046271 ENSRNOT00000091610,ENSRNOT00000074487,ENSRNOT00000003213 3 3 3 91 10 4345459 4345477 TTAAGGACAGCAGGAACCA 59 4345529 4347181 GCAATGGTCTTACCTTCATCTC 59 NA Rattus norvegicus 81 Slc7a1 ENSRNOG00000000924 ENSRNOT00000082850 1 1 3 80 12 8032859 8032877 CTCAGCTAGCAGGTGTGAG 60 8032921 8085546 AGCAAATCTGTGGAGGAGG 59 NA Rattus norvegicus 81 Ptpn6 ENSRNOG00000014294 ENSRNOT00000065416,ENSRNOT00000082739,ENSRNOT00000079947 3 3 3 80 4 157246377 157246685 ACATTCTTCCCTTTGACCAC 58 157246316 157246336 TGGCATTGATGTAATCAGACC 59 NA Rattus norvegicus 81 LOC681766 ENSRNOG00000040136 ENSRNOT00000061746 3 1 2 80 6 11058499 11061305 TCACAGTGACGAATACTCCA 59 11058438 11058459 TACTCACTGGATTTAGTAGGGC 59 NA Rattus norvegicus 81 Cblc ENSRNOG00000018953 ENSRNOT00000025829,ENSRNOT00000092048 1 2 2 80 1 80710175 80710194 GCATCCTACAGACCATTCCT 59 80708334 80710132 GGTAGAGGAAGATGCCGTC 60 NA Rattus norvegicus 81 Tmem9b ENSRNOG00000013591 ENSRNOT00000018309,ENSRNOT00000067388 3 2 2 82 1 174370117 174372222 TTCTGTCACAATCAAGGTTACC 59 174370056 174370080 CTAAGGTAAGGTATACCATGTACAG 58 NA Rattus norvegicus 81 Qpct ENSRNOG00000005705 ENSRNOT00000049672 2 1 2 83 6 1657445 1668261 GCAGGAGAAGAACTACCAC 58 1668308 1668326 ATCTCAGAAATGCTGGTGG 58 NA Rattus norvegicus 81 Rn60_15_0083.1 ENSRNOG00000008664 ENSRNOT00000011480 1 1 1 60 15 4130897 4130915 AAAGGCTACCACAACTCCA 59 4131051 4131071 TTCCTTCTTGGCATTCTTACC 58 NA DesignNoJunction Rattus norvegicus 81 Fhl4 ENSRNOG00000006998 ENSRNOT00000009162 3 1 1 133 7 26144352 26144370 TTTAGCTGCTGCCCTAAGG 60 26141368 26141387 ACTGTCGTGTTGAATCAGGA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Btla ENSRNOG00000030246 ENSRNOT00000050092 3 1 2 81 11 60536074 60536096 TAATAGCCACTCAGTAGTCATCC 59 60531122 60532593 GATGTCAGATGCTGTTATTAGAGG 59 NA Rattus norvegicus 81 Klhdc1 ENSRNOG00000004425 ENSRNOT00000064668 3 1 2 120 6 91557927 91557945 TTTGGTGGACTAAGTGCAG 58 91560444 91561814 ATGACCTGAACATTCTGGG 57 NA Rattus norvegicus 81 RGD1359158 ENSRNOG00000027161 ENSRNOT00000037500 3 1 1 63 1 239223092 239223111 TACAAACCACTGTCAAAGCC 59 239209366 239209387 AAGAGTCCTTTACTGTCTTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Lsr ENSRNOG00000021053 ENSRNOT00000028585 2 1 2 81 1 89391732 89391750 TTACTGCTCTGTGGTCTCG 59 89388043 89391687 AAAGAGCCAATCAAGGACG 58 NA Rattus norvegicus 81 Adcy6 ENSRNOG00000054757 ENSRNOT00000088323,ENSRNOT00000082699 3 2 2 83 7 140281260 140281374 AATGTCAGCATCCTGTTTGC 60 140281196 140281215 CAAGGTCATGACCAGTTCCT 60 NA Rattus norvegicus 81 Scn2a ENSRNOG00000005018 ENSRNOT00000007069 1 1 2 80 3 51749921 51751038 TAATTCCAGGCCTGAAGACC 60 51751081 51751099 ACACGGTGAGGATCATGAC 60 NA Rattus norvegicus 81 Shc1 ENSRNOG00000020657 ENSRNOT00000056652,ENSRNOT00000028038 2 2 2 81 2 188750480 188750874 TGCAAACAGATCATTGCCA 58 188751204 188751222 CAACGTACTCAGCTGTGTC 59 NA Rattus norvegicus 81 Mfge8 ENSRNOG00000017510 ENSRNOT00000079100,ENSRNOT00000067889,ENSRNOT00000024253 2 3 3 80 1 140853798 140853816 TAAGGCTGTACCCTGTCTC 58 140848634 140853754 CAGAGCATCCATGCAACTC 59 NA Rattus norvegicus 81 Mfge8 ENSRNOG00000017510 ENSRNOT00000079100 3 1 3 110 1 140846360 140846382 GTATATGAGGAACAAGGAACCAG 59 140845775 140846188 TTGAGTCAACCCATAGCGA 59 NA Rattus norvegicus 81 Plekha5 ENSRNOG00000008747 ENSRNOT00000042291 3 1 2 80 4 174755802 174755822 AAAGAGGCTCTTCAGAAACAG 58 174757877 174758797 CTACTTCCTCTTCCTCGCT 58 NA Rattus norvegicus 81 Ndufa2 ENSRNOG00000017571 ENSRNOT00000023811 3 1 1 63 18 29587421 29587439 CGAATGTTCAGAGGTGCAG 59 29585977 29585995 CACATTCTTCTCTTGGCCA 58 NA DesignNoJunction Rattus norvegicus 81 Parpbp ENSRNOG00000004682 ENSRNOT00000006249 2 1 2 88 7 28701786 28711614 AACAAACAGCATCACGGAG 59 28701716 28701734 GGCAAGTTCAGTTTCTCGT 58 NA Rattus norvegicus 81 Ewsr1 ENSRNOG00000009437 ENSRNOT00000012634 3 1 2 83 14 85343702 85343720 GCTATACCCAGGCTCAGAG 59 85339630 85343655 TGGTATAACCAGTGGGAGG 58 NA Rattus norvegicus 81 Slc17a3 ENSRNOG00000032745 ENSRNOT00000091749,ENSRNOT00000029626,ENSRNOT00000082719 2 3 4 80 17 43537171 43537190 CTACAAGTGAGCAGTGTGAG 58 43534704 43537130 AACATAAACTCGGGACTTTCC 58 NA Rattus norvegicus 81 Rdh11 ENSRNOG00000054770 ENSRNOT00000078436 1 1 2 80 6 102357138 102357157 TGGCAATGAGACAATAGCCA 60 102356880 102357099 CTACTAGAAACGCAATCCATAGG 59 NA Rattus norvegicus 81 Arhgef7 ENSRNOG00000012934 ENSRNOT00000017947 2 1 2 86 16 83019512 83019530 GAGGAAGACGCTCAGATCC 60 83010200 83019464 TTTGCGTGAACTTGAGTTCAG 60 NA Rattus norvegicus 81 Lrguk ENSRNOG00000008775 ENSRNOT00000082175,ENSRNOT00000011692 1 2 2 80 4 61461002 61463016 CAATTCAGACCAAACCCGA 58 61463057 61463078 TAATCTTCTGCTGATCTAGCTC 57 NA Rattus norvegicus 81 Lypd2 ENSRNOG00000006058 ENSRNOT00000007958 3 1 2 133 7 115968058 115969177 CTTGCTATGGCCTTACGGT 60 115967551 115967963 AAAGGAAACACTATCTCCCGG 60 NA Rattus norvegicus 81 Ryr1 ENSRNOG00000020557 ENSRNOT00000079473,ENSRNOT00000027893 1 2 2 80 1 88038172 88039264 ACACTCAAGACTCTGCTGG 59 88038110 88038130 CTTCGTCTTCTTCAGGTTGTC 59 NA Rattus norvegicus 81 Kcnk3 ENSRNOG00000009790 ENSRNOT00000013107,ENSRNOT00000068412 1 2 2 99 6 27155931 27189840 ACCACAATCGGCTATGGTC 60 27155850 27155868 ACATGACTAGTGTGAGCGG 60 NA Rattus norvegicus 81 Cab39l ENSRNOG00000011603 ENSRNOT00000084505 2 1 2 80 15 39838931 39838950 GAAACTCATGATGAACCTGC 57 39838992 39869934 CCCAGATGAGCCTTAAAGAC 58 NA Rattus norvegicus 81 Cab39l ENSRNOG00000011603 ENSRNOT00000016162 1 1 2 80 15 39838931 39838950 GAAACTCATGATGAACCTGC 57 39838992 39847145 GCCACAAACACCTTAAAGAC 58 NA Rattus norvegicus 81 Rasgrp3 ENSRNOG00000032703 ENSRNOT00000079819 1 1 2 80 6 21087137 21089169 CTAGACAAAGACCAGGACGG 60 21087076 21087095 GCAGTGTAGCTGAGATTTGG 59 NA Rattus norvegicus 81 Rasgrp3 ENSRNOG00000032703 ENSRNOT00000079819 2 1 2 80 6 21089202 21089220 GACTTTGAGAGCATAGCGG 58 21087127 21089158 GCTAATTAAGCCGTCCTGG 58 NA Rattus norvegicus 81 Ptpn13 ENSRNOG00000002061 ENSRNOT00000061162,ENSRNOT00000087081 2 2 2 81 14 7737873 7738588 ATGCCTAAAGCCTGGAGAC 60 7737810 7737828 AATGTCAACTGCAGCATGG 59 NA Rattus norvegicus 81 Rtn3 ENSRNOG00000021202 ENSRNOT00000028785 2 1 2 80 1 222707135 222707153 TCCAGCCTTACCAAGACTG 59 222686579 222707092 AATCAGATCATGCACTGGGA 59 NA Rattus norvegicus 81 Pitpna ENSRNOG00000003846 ENSRNOT00000005368 1 1 2 80 10 63747096 63747115 GCGCCCTGAATATACATGAG 59 63747156 63753445 CTTCCTTCATGTACTCATTTGC 58 NA Rattus norvegicus 81 Slu7 ENSRNOG00000003822 ENSRNOT00000005132 1 1 2 80 10 29042159 29042177 GGGATACAAATGCTGCCAC 59 29042218 29042608 TCCTCTGAATTAACACTCTCCT 58 NA Rattus norvegicus 81 Cyp11b2 ENSRNOG00000030111 ENSRNOT00000091401,ENSRNOT00000068707,ENSRNOT00000038109 2 3 3 80 7 116196987 116197244 CTTAAAGAGACCTTGAGGCTC 58 116196927 116196946 ATAGTTCTGAAGCACCAGGT 59 NA Rattus norvegicus 81 Olr1159 ENSRNOG00000049191 ENSRNOT00000068066 3 1 1 60 8 19973119 19973141 TATGGATAGTCTACTACTGGCTG 59 19973159 19973179 AGGATGACAAATTGCTACCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tsacc ENSRNOG00000037552 ENSRNOT00000056898 2 1 1 107 2 187662021 187667211 AAGGAAGAAGCCAAAGAGGA 59 187661933 187661951 GTTCGAGAAAGTAGCTGGC 59 NA Rattus norvegicus 81 Snapc1 ENSRNOG00000009296 ENSRNOT00000012361 1 1 1 80 6 96884103 96884126 CAACTAAGAGAAAGAGAACCAGAG 59 96884164 96891216 GAACATCACCTTTGCTCCTG 59 NA Rattus norvegicus 81 Snapc1 ENSRNOG00000009296 ENSRNOT00000012361 2 1 1 81 6 96884103 96884126 CAACTAAGAGAAAGAGAACCAGAG 59 96884166 96891217 GGAACATCACCTTTGCTCC 59 NA Rattus norvegicus 81 Itgae ENSRNOG00000046639 ENSRNOT00000077107 3 1 2 80 10 59682169 59682188 AGCTGCCTTATGAAGTGGAG 60 59682230 59683680 ATCCTCACAAAGCTCCTCTG 60 NA Rattus norvegicus 81 Ncoa1 ENSRNOG00000004068 ENSRNOT00000091659 1 1 2 80 6 28747494 28750024 AGATGGCGAAGATTTCCAG 58 28747432 28747452 GATTCTACACCTGTAATGGCT 58 NA Rattus norvegicus 81 Ncoa1 ENSRNOG00000004068 ENSRNOT00000068531 2 1 2 80 6 28678396 28679829 AGTGAACCTGAAAGGAGCC 60 28678205 28678224 TCTGCATTGGTTCTTATGGC 59 NA Rattus norvegicus 81 Arhgap17 ENSRNOG00000013836 ENSRNOT00000031770 3 1 3 86 1 193239868 193246177 CAGAATCGTCACTGACACC 58 193239800 193239818 TCTTTGCTTGCCAAGTCTG 59 NA Rattus norvegicus 81 Arhgap17 ENSRNOG00000013836 ENSRNOT00000019304,ENSRNOT00000031770 3 2 3 89 1 193254248 193255712 AAGAAGGAGAGCTTTGGTG 57 193254177 193254196 GAAAGCAGGAGATATGTGCT 58 NA Rattus norvegicus 81 Slc4a5 ENSRNOG00000010378 ENSRNOT00000014249 3 1 2 80 4 114922709 114922727 AAGTGGAAGAGAAGGCTGG 59 114922768 114924172 TTGAAGGGAAATCTTGTTCTGG 59 NA Rattus norvegicus 81 Rac1 ENSRNOG00000001068 ENSRNOT00000087094 2 1 2 81 12 13097497 13100062 TGTGTTTACAAGGAATACAGCC 59 13100103 13100122 GATGTACTCTCCAGGGAACG 60 NA Rattus norvegicus 81 AC141526.1 ENSRNOG00000046724 ENSRNOT00000070888 1 1 1 60 1 89132847 89132865 TCCTACCCTTAGGAGTGGT 59 89132637 89132655 CTCTGATTGGCTCCGTAGG 60 NA DesignNoJunction Rattus norvegicus 81 Nhp2 ENSRNOG00000049622 ENSRNOT00000073317,ENSRNOT00000090404 2 2 2 80 10 37071946 37071964 AGGTGTACTGCCATCTTCC 59 37072007 37072419 CACCCAAGTCCGTCTTAGAG 60 NA Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000077623,ENSRNOT00000021278 2 2 6 80 1 262013549 262013568 ACGGATGAGGAATTTGAGGA 59 262012003 262013506 CAGACAAGCCACAATCTCC 59 NA Rattus norvegicus 81 RT1-M6-1 ENSRNOG00000022107 ENSRNOT00000086007 2 1 4 80 20 2059777 2078316 ACTGAGATGGAAACCAGCA 59 2078360 2078378 GCTCCAATGGTGACAAACC 60 NA Rattus norvegicus 81 Mfn1 ENSRNOG00000011057 ENSRNOT00000065144,ENSRNOT00000077170 2 2 2 80 2 118942522 118942543 TTGATAAGTTCTGCCTTGATGC 59 118942581 118944601 AATGTTTCTCCGTGTTCATCAG 59 NA Rattus norvegicus 81 Tlk1 ENSRNOG00000009300 ENSRNOT00000076281,ENSRNOT00000076554 3 2 2 121 3 57389794 57389812 AGTACTGGGAGTTGCAGTG 59 57363919 57376267 GATTGTTTCTTCTCTGGTGTCTC 60 NA Rattus norvegicus 81 Cbs ENSRNOG00000029528 ENSRNOT00000045275 2 1 2 87 20 10362822 10364717 CATGAGCAGATCCAATACCG 59 10362754 10362772 AGTTTAGCAGGTCAATGGC 58 NA Rattus norvegicus 81 Hivep3 ENSRNOG00000009341 ENSRNOT00000066774,ENSRNOT00000078155 2 2 2 80 5 139047415 139047434 AAAGGCAGAGGAAGGTACTC 59 139047475 139062468 TTTGATTTGTACCCTCCTTCG 58 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000088308,ENSRNOT00000091225,ENSRNOT00000083413 3 3 9 103 20 2087659 2087970 GTTCTGAGCACTTGAAAGC 57 2087574 2087592 ATGGTAATCAGGTTGGCTG 58 NA Rattus norvegicus 81 Abcc9 ENSRNOG00000036960 ENSRNOT00000067489 2 1 2 92 4 176811203 176811759 TAACCATAGCTCACCGTGTC 60 176811130 176811148 TTGGACCAGTATCGCACTC 60 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000042230,ENSRNOT00000070918,ENSRNOT00000052367,ENSRNOT00000042251 2 4 6 82 6 4315604 4315623 TCATTGAGATTGGAGAACCC 57 4303092 4311874 CTTGTCATCGTACTCCTCTG 58 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000070918,ENSRNOT00000052367 2 2 6 80 6 4307837 4311884 TTCACATTAACAGGCCAACC 59 4307776 4307797 TGAAATGCTGATTACGGTAGAG 58 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000042230 1 1 6 80 6 4311765 4311888 TGGCTTCACATTAACAGAAGG 59 4307798 4307818 GGAATCGGATGATCTCTAGCA 59 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000042230 2 1 6 83 6 4311764 4311887 GGCTTCACATTAACAGAAGGA 58 4307794 4307813 AGAGGGAATCGGATGATCTC 59 NA Rattus norvegicus 81 Ntng2 ENSRNOG00000013694 ENSRNOT00000045919 3 1 2 90 3 7746888 7752843 CTTTGGCACTGTGACTATCC 59 7746817 7746836 TATCACCTGAGGAGATCTGG 58 NA Rattus norvegicus 81 Khsrp ENSRNOG00000047628 ENSRNOT00000072033 1 1 2 83 9 10021814 10021832 GCTTACTACGGACAGACCC 60 10021879 10022885 ATTTGCTTCAGTTGCCTGC 60 NA Rattus norvegicus 81 Myo9a ENSRNOG00000011619 ENSRNOT00000083558 2 1 2 80 8 64763802 64774605 TTCGTAGATCAATGGGAAAGG 58 64774645 64774665 AAGGCAATCGGACTATAACAG 58 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 1 10 10 73 18 30188422 30188440 GTATCCAGTGCAACACCAG 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Mtx1 ENSRNOG00000042977 ENSRNOT00000064715 3 1 2 85 2 188523980 188526427 CCACCTTCGTAAAGAGATCCA 60 188523915 188523933 GCATAGCCTCTGCATACCA 60 NA Rattus norvegicus 81 Afap1 ENSRNOG00000060665 ENSRNOT00000089006 1 1 2 126 14 79938590 79938608 TATGAACAGGAGGGCAGTG 59 79933544 79938500 TTTGTTCTTCAACGAGCCG 59 NA Rattus norvegicus 81 Gstt2 ENSRNOG00000052415 ENSRNOT00000081140,ENSRNOT00000080203 1 2 2 80 20 13761045 13761357 TTTACTCAAAGGGCAGCAC 58 13761401 13761419 CTTCCGTCTTTGAGGACAG 58 NA Rattus norvegicus 81 Mta1 ENSRNOG00000004711 ENSRNOT00000006521 3 1 2 80 6 137946272 137946291 CCTGTCATCAACAATGGCTC 59 137946333 137946555 CTTCATGTTGCCATCTACCC 59 NA Rattus norvegicus 81 Gadd45gip1 ENSRNOG00000003011 ENSRNOT00000004027 1 1 1 83 19 25947265 25947283 TAGCGACCATGCAAGAGTC 60 25948668 25948686 ACTCTGCAATATGCTGCTC 58 NA DesignNoJunction Rattus norvegicus 81 Dfna5 ENSRNOG00000009970 ENSRNOT00000013264 1 1 2 81 4 79942663 79942681 GCCAGATAATGCCACAGTC 59 79935151 79942618 CAGAGCATGGAGCAAATGG 59 NA Rattus norvegicus 81 P2rx2 ENSRNOG00000037456 ENSRNOT00000056694 3 1 5 116 12 52397970 52398096 CTTTACTTCGTGTGGGTTGC 60 52398175 52398193 GGTGATGATGGAGCTCTCC 60 NA Rattus norvegicus 81 Eml4 ENSRNOG00000030294 ENSRNOT00000042307 1 1 2 86 6 6637353 6637372 TCATTCCTTCGGATGTTGAC 58 6637418 6638643 TTCCTCGATAACCATATTCCAG 58 NA Rattus norvegicus 81 Wdr55 ENSRNOG00000017251 ENSRNOT00000085470 1 1 2 80 18 29590862 29590882 TCAGGAAACTTCTTATGACCC 57 29590924 29591620 CTCTTGGCATCTCATGGTG 58 NA Rattus norvegicus 81 Ogfr ENSRNOG00000009355 ENSRNOT00000012611,ENSRNOT00000086541 1 2 2 80 3 175930607 175930626 ATGATACGACCGATGAGGAC 59 175930669 176095188 TCATCCTGGACTGGAACAG 59 NA Rattus norvegicus 81 Grip1 ENSRNOG00000004013 ENSRNOT00000088861 3 1 4 81 7 64825370 64825388 CAGTCGGGAATCCTGAGAG 59 64825546 64829963 TGATTGTTGCCAAGAGGGT 60 NA Rattus norvegicus 81 Glp1r ENSRNOG00000001152 ENSRNOT00000001527,ENSRNOT00000079509 1 2 2 82 20 9619865 9620240 ACATCAAATGCAGACTCGC 59 9620284 9620304 CATCACAAAGGCAAAGATGAC 58 NA Rattus norvegicus 81 Epb41l2 ENSRNOG00000012346 ENSRNOT00000061332 3 1 5 81 1 20903358 20909577 AGATACTAGCGAGTTCACATGAG 60 20903299 20903317 ATTACGCTTTCGCCTTTCC 59 NA Rattus norvegicus 81 Fchsd2 ENSRNOG00000019319 ENSRNOT00000042524 2 1 2 80 1 166342560 166351178 TTGTGACAGTGATACTAGTCG 57 166351217 166351238 TTTCGAGCCTCCTTATTTAGAC 58 NA Rattus norvegicus 81 Fchsd2 ENSRNOG00000019319 ENSRNOT00000091822 1 1 2 80 1 166344237 166351177 AGAATGACGATAGCTGAGAGTC 60 166351215 166351236 TCGAGCCTCCTTATTTAGACTG 60 NA Rattus norvegicus 81 Psma3 ENSRNOG00000007851 ENSRNOT00000010753 3 1 2 81 6 93429467 93431202 ACATGTTGGAATGGCAGTG 59 93431246 93431265 AAAGTTGGACGCTTCTTCTC 59 NA Rattus norvegicus 81 Arntl2 ENSRNOG00000001830 ENSRNOT00000084207 1 1 3 80 4 181120391 181124745 TATGATCAGGTATCAAGATCGGG 59 181124784 181124803 TTGTTCCTTTACTTTGGCCG 59 NA Rattus norvegicus 81 Ppp1r11 ENSRNOG00000000780 ENSRNOT00000078362 2 1 3 80 20 2095572 2096769 TGGAATGGGAGAATCGGAG 59 2096813 2096831 CAGTGTCACTTGACCACTC 58 NA Rattus norvegicus 81 Hydin ENSRNOG00000017178 ENSRNOT00000035590 2 1 4 80 19 41271054 41271669 GTGACATCTCAGTGAGGAG 57 41270992 41271011 CATCCTGTTAGGAGTGATCC 57 NA Rattus norvegicus 81 Lcp1 ENSRNOG00000010319 ENSRNOT00000082191 2 1 2 130 15 57242185 57242314 GAAAGATGGCTGTCTGTCAC 59 57243593 57243611 CATTGCAGCTGATGTACCC 59 NA Rattus norvegicus 81 Mcm3ap ENSRNOG00000001272 ENSRNOT00000064637 3 1 2 85 20 12885585 12885605 GAAATACACTGTTCCCTTGTC 57 12882704 12885540 GATCTTCAAACCATCCTTGAC 57 NA Rattus norvegicus 81 LOC100911440 ENSRNOG00000049944 ENSRNOT00000077776,ENSRNOT00000025240 2 2 2 86 1 214414238 214414504 GTATGCCAGCATGTCTGAC 59 214413377 214413395 GTCAGGTTTACTGCTGCTC 59 NA Rattus norvegicus 81 Aox4 ENSRNOG00000014555 ENSRNOT00000083902 1 1 3 80 9 65104702 65104720 CTTCATGCTCCACAACCAG 59 65104763 65117397 CAATCGAAGAGAACTCGTGC 59 NA Rattus norvegicus 81 Fbxl3-ps1 ENSRNOG00000012168 ENSRNOT00000090699,ENSRNOT00000035839 1 2 2 80 17 8516179 8516200 GTAAATTGCTCTATCCAGACCT 58 8511383 8516138 CACAAAGTGAGACTTTGGC 57 NA Rattus norvegicus 81 Kdm4b ENSRNOG00000049221 ENSRNOT00000089374,ENSRNOT00000071199 3 2 3 80 9 10710531 10710552 CAGGGACTTCAACAGATATGTG 59 10707666 10710490 TTGGGTGGGATGATCTTGG 59 NA Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000075011,ENSRNOT00000076497,ENSRNOT00000018185 3 3 5 70 7 120764561 120764579 GTTGATGCAGCTTGTGGAC 60 120762934 120762953 AAGTAGTCCGGTATCGTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Arhgap9 ENSRNOG00000006946 ENSRNOT00000057833 3 1 2 80 7 70613192 70613210 ACAGAGGAATCAGTCTCCT 57 70613254 70613508 GTACAGCTTTGTTCCAGGA 57 NA Rattus norvegicus 81 Ptbp3 ENSRNOG00000016334 ENSRNOT00000089251 1 1 2 113 5 76728268 76753015 TAGCAGTCGGTTTAAAGCG 58 76717954 76728194 TGTCATTCCCATTAGCATACAC 59 NA Rattus norvegicus 81 Scaf8 ENSRNOG00000016919 ENSRNOT00000065733 2 1 2 80 1 44019400 44045283 TCAACAGCGAGTTGTATTCG 59 44045326 44045344 TGGCTGCCTTTGTAATCTG 58 NA Rattus norvegicus 81 Chid1 ENSRNOG00000019351 ENSRNOT00000026215 2 1 2 80 1 214040419 214048974 TGGAGCCAGGTACATACAG 59 214040357 214040375 TCAAAGAAGTGTTCCGCAG 58 NA Rattus norvegicus 81 Dmd ENSRNOG00000046366 ENSRNOT00000034372 3 1 4 80 X 53505014 53516721 TTCCCTAGTTCAAGAGGACAC 59 53516762 53516781 AACTAAGGACTCCATCGCTC 59 NA Rattus norvegicus 81 Clvs1 ENSRNOG00000006919 ENSRNOT00000087182 3 1 2 88 5 22392771 22392791 CCACTTGGAAGAGATTTGCC 59 22392842 22392860 TTCATTCAGTTCCAGGCGA 59 NA Rattus norvegicus 81 Wbp1 ENSRNOG00000008720 ENSRNOT00000082996,ENSRNOT00000039966 2 2 2 85 4 113952879 113953038 TGAACTCTGGTGGTTCTGG 59 113952812 113952831 TGAGTTTAGCTCTTCGGTGG 60 NA Rattus norvegicus 81 RGD1305455 ENSRNOG00000039214 ENSRNOT00000060020 3 1 2 137 12 19581287 19581305 TTCACTGGATAGACTGCCC 59 19580692 19580842 GCTATTCAGCACCTTGAGG 58 NA InUTR Rattus norvegicus 81 Wdr74 ENSRNOG00000042878 ENSRNOT00000088282 2 1 2 80 1 224937912 224937932 TTAGCATCTTGTGGCTTAGAC 58 224937970 224938123 GAGATAAACCTTATGCTCTAGCC 59 NA Rattus norvegicus 81 Zfp9 ENSRNOG00000006726 ENSRNOT00000065579,ENSRNOT00000079053 2 2 3 92 4 150520268 150520286 TTTACGTAGGAGCTGTGGT 58 150518987 150519522 TCTCCTTTCCTTGCAGTCC 59 NA Rattus norvegicus 81 Fn1 ENSRNOG00000014288 ENSRNOT00000057585,ENSRNOT00000019772 2 2 2 80 9 78919507 78920734 TGTCAGTCCAGATCAAACAG 58 78919446 78919466 TTCTGAGCATAGACACTAACC 57 NA Rattus norvegicus 81 Fn1 ENSRNOG00000014288 ENSRNOT00000019772 1 1 2 80 9 78919450 78919472 GTATGTGGTTAGTGTCTATGCTC 59 78918564 78919410 CGGTCAATGTTGGTCACTG 59 NA Rattus norvegicus 81 Rasgrf1 ENSRNOG00000014025 ENSRNOT00000082757,ENSRNOT00000018794 1 2 2 80 8 97386334 97386357 GAAGGCAGATAAGAATGAAAGGAC 60 97386391 97390662 GAAGCGATCAAGTTACTGATATGG 60 NA Rattus norvegicus 81 Mga ENSRNOG00000006378 ENSRNOT00000064395 3 1 4 84 3 111716587 111720127 CTGCTCTTCAAGAAGGTGGA 60 111720168 111720192 TCCAAGTACTCATCTAGCTTATCAC 60 NA Rattus norvegicus 81 Mga ENSRNOG00000006378 ENSRNOT00000067865,ENSRNOT00000008528,ENSRNOT00000064345 2 3 4 80 3 111718748 111720134 CTAGGAATGAAGGTGGAAATTCAG 60 111720168 111720191 CCAAGTACTCATCTAGCTTATCAC 59 NA Rattus norvegicus 81 Mga ENSRNOG00000006378 ENSRNOT00000067865,ENSRNOT00000008528,ENSRNOT00000064345 1 3 4 80 3 111718744 111720126 GCATCTAGGAATGAAGGTGG 58 111720163 111720187 GTACTCATCTAGCTTATCACTACAG 58 NA Rattus norvegicus 81 Sema6a ENSRNOG00000004033 ENSRNOT00000005476 1 1 2 84 18 41355436 41355454 AATGATCTGCTCAAGGCAC 58 41334744 41355389 GAATCACTCCCTTCTTGTCC 58 NA Rattus norvegicus 81 Pik3r4 ENSRNOG00000013669 ENSRNOT00000090707,ENSRNOT00000018654 1 2 2 80 8 114337595 114337614 TCCAGCTTCTTGGAATTGAG 58 114337657 114341201 TCTGATCCAGAATCCTGCT 58 NA Rattus norvegicus 81 Mplkip ENSRNOG00000013806 ENSRNOT00000018458,ENSRNOT00000080628 3 2 2 62 17 49956841 49956859 AGCATCAGTTCGGCTACTC 60 49955759 49956815 ATGTCCTTGGAGAACCCTG 59 NA DesignRelaxed Rattus norvegicus 81 Ugt2b35 ENSRNOG00000001980 ENSRNOT00000002712,ENSRNOT00000092201 3 2 2 82 14 22556093 22556113 CCAATATCGCCAAATGTTGAC 58 22556154 22557559 ACGAAGTCTTCAATATCCTTGG 58 NA Rattus norvegicus 81 Sytl4 ENSRNOG00000003526 ENSRNOT00000004909 2 1 2 80 X 104768745 104768765 GATCAAAGAAGCCAAGAACCT 59 104767987 104768703 ATGGGAAGGAGGTATCCCT 59 NA Rattus norvegicus 81 Optc ENSRNOG00000003059 ENSRNOT00000064556 2 1 1 60 13 50740311 50740329 GCAGAGCTCAGGGATACAG 60 50737225 50737245 GTAGAGAAACTGCAGCTTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Tbck ENSRNOG00000011454 ENSRNOT00000038827,ENSRNOT00000083937 1 2 2 80 2 237814842 237814861 CAACGAGATTGGCTTCATCC 59 237830458 237831622 TTGTGCAGTGGAAATACATGAG 59 NA Rattus norvegicus 81 Hdac3 ENSRNOG00000019618 ENSRNOT00000084735,ENSRNOT00000060417,ENSRNOT00000078667 1 3 3 80 18 31077933 31077953 TTTCAATATCCCTCTCCTGGT 58 31077776 31077893 GATGTTTCATATGTCCAGCAC 58 NA Rattus norvegicus 81 Gxylt1 ENSRNOG00000005234 ENSRNOT00000058349 1 1 2 139 7 134495687 134495705 GTGTCCTTGGAGGAAGGAG 59 134486856 134495584 GAGACCTCCTTACACCTGC 60 NA Rattus norvegicus 81 LOC100361016 ENSRNOG00000021972 ENSRNOT00000046416 1 1 1 60 X 93065480 93065499 CCTAAATTGGCAAGAGTCCC 59 93065313 93065331 ATCTGACAGTGCCATAGGT 58 NA DesignNoJunction Rattus norvegicus 81 Tnfrsf10b ENSRNOG00000038483 ENSRNOT00000066128 1 1 2 108 15 51454619 51454638 TCTAGGCTGTGAACAGGAC 59 51454710 51461139 AGTTCTGTCAGGTTCCGTG 60 NA Rattus norvegicus 81 Astn1 ENSRNOG00000005667 ENSRNOT00000075976,ENSRNOT00000007660 2 2 4 80 13 76298274 76335763 AGACATCAGTAAAGGCAACTC 58 76335804 76335823 TATTCTGGGAATGTCAGCAC 58 NA Rattus norvegicus 81 Trim26 ENSRNOG00000032930 ENSRNOT00000079110 3 1 3 81 20 2206407 2207998 AGTAGCCAAGACACCAAGG 59 2205930 2205948 TAACCATGTGAGGGATGGC 60 NA Rattus norvegicus 81 Fam49b ENSRNOG00000061246 ENSRNOT00000090784,ENSRNOT00000078116 3 2 2 115 7 104525511 104527566 AATTAATAACGTCCCGGCAG 59 104525415 104525433 TTGTTGCGTCACTTAAGGT 58 NA Rattus norvegicus 81 Vom2r3 ENSRNOG00000046319 ENSRNOT00000072186 2 1 2 80 1 407556 407575 ATCAGAAACAAACAGCCGAC 59 407615 408801 GCTCCATATCTGTATCATTGGC 59 NA Rattus norvegicus 81 Fam161a ENSRNOG00000009881 ENSRNOT00000087091 1 1 2 96 14 107795257 107795275 TTGTGAATACAGCCCTCCG 60 107797829 107797852 TCTTGCCAATTCTTTCATCCTG 59 NA Rattus norvegicus 81 Kiss1 ENSRNOG00000047481 ENSRNOT00000076506,ENSRNOT00000077054 1 2 2 142 13 50532091 50532109 TCCAGAATGATCTCGCTGG 59 50529857 50529875 GCATTAACGAGTTCCTGGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC100910877 ENSRNOG00000032560 ENSRNOT00000051244 2 1 2 80 12 11712758 11712779 GATTCCATCTTATGCTCTTCAC 57 11711292 11712717 TCCTTGCTGAACCTTTCTG 58 NA Rattus norvegicus 81 LOC102551071 ENSRNOG00000054140 ENSRNOT00000089074,ENSRNOT00000085644,ENSRNOT00000082518 2 3 3 84 7 2907679 2907934 AGAGCGATGAGATGAATGTG 58 2907614 2907632 CCTTGGTCCTTGTTCTTGG 58 NA Rattus norvegicus 81 Xpo7 ENSRNOG00000013288 ENSRNOT00000018440 2 1 2 82 15 52376430 52376448 GTCGTTGTGAGCCAATCAC 60 52375412 52376387 CACTAGCTTCCTTACACTAGGA 59 NA Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000076825 3 1 5 107 5 101639498 101639517 TTGTCACTCTTTCTCCCGAG 60 101639587 101648428 GGGCTAAAGTCTCGGACTC 60 NA Rattus norvegicus 81 RGD1561648 ENSRNOG00000023824 ENSRNOT00000086123,ENSRNOT00000067395,ENSRNOT00000080052 1 3 3 80 7 63845458 63845478 GACCCTAGGATTGATGTTCAG 58 63845519 63851799 AACAGTGTTCCCTTCTTAGC 58 NA Rattus norvegicus 81 Ehd3 ENSRNOG00000007744 ENSRNOT00000010419 3 1 2 80 6 25076755 25087252 ACCACCTTCATCAGGTACC 59 25087294 25087314 TATGAAGGAATCAGTGGTTGG 58 NA Rattus norvegicus 81 Sgk1 ENSRNOG00000011815 ENSRNOT00000083452,ENSRNOT00000040736,ENSRNOT00000061157,ENSRNOT00000016121 1 4 4 87 1 24190586 24191685 GCTTTCATGAAACAGAGAAGGA 59 24190135 24190538 GAACTTCAGGGTGTTTGCA 59 NA Rattus norvegicus 81 Actr3 ENSRNOG00000003206 ENSRNOT00000084552,ENSRNOT00000004520 1 2 2 80 13 41720267 41722195 TCATCCCATCATGTATTGCCA 60 41720207 41720225 CATCCACGCCTTTCATCAC 59 NA Rattus norvegicus 81 Actr3 ENSRNOG00000003206 ENSRNOT00000004520 1 1 2 80 13 41713185 41713204 GTCCTTCAATGTTCCAGGC 59 41711835 41711854 CCTACTTGTCTTGAGGTCCA 59 NA Rattus norvegicus 81 Capn3 ENSRNOG00000008609 ENSRNOT00000080533 2 1 4 80 3 112256885 112259838 CCATTGATACAATTGTTCCGG 58 112259880 112259898 CAGTGACTGAATAGGCGTG 58 NA Rattus norvegicus 81 Rps6ka6 ENSRNOG00000002592 ENSRNOT00000003512 1 1 2 90 X 82723524 82723542 GATGCTACCATTCGCTCCT 60 82705891 82723470 AATCTGTGGCTCGCTACTG 60 NA Rattus norvegicus 81 Vrk2 ENSRNOG00000007864 ENSRNOT00000086299 1 1 2 106 14 110757983 110758001 CCTTGGTTACTGCATGCTG 59 110755100 110757913 GTTCATCCAGCAGTTTGGT 58 NA Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000020204 2 1 7 131 17 57067668 57082576 TTGTTGTTCAAGCTGCCAC 60 57082670 57082689 CTTCTTCTGCTAGTTGCTGG 59 NA Rattus norvegicus 81 Bicc1 ENSRNOG00000000614 ENSRNOT00000000754 3 1 2 81 20 18932169 18932187 ACAGACCAGGATCTGAAGG 58 18932229 18937901 TACTTAGCTCTGAAATTGCCAG 59 NA Rattus norvegicus 81 Cd44 ENSRNOG00000006094 ENSRNOT00000009073 1 1 3 124 3 92736841 92736859 ACCATTGAGAAGAGCACCC 60 92712420 92736753 GAGTCTCCATCACTGGTGG 60 NA Rattus norvegicus 81 Cd44 ENSRNOG00000006094 ENSRNOT00000008760 3 1 3 83 3 92708105 92721566 AACAGAAAGCAAGGGACAC 58 92708040 92708058 GGAATCTGAGGTCTCCTCG 59 NA Rattus norvegicus 81 AABR07018970.1 ENSRNOG00000008814 ENSRNOT00000011656 3 1 1 89 15 82081293 82081311 ATAACAGACTCTGCCAACC 57 82081221 82081241 GGTTGACAAATGTTGTTACCC 58 NA DesignNoJunction Rattus norvegicus 81 Ablim3 ENSRNOG00000019365 ENSRNOT00000080365 3 1 2 93 18 57143385 57146056 ATTACTACCGCTCAGCTGG 59 57141344 57141362 GTCTTGCTCTTGGTTGCTG 60 NA Rattus norvegicus 81 Htr4 ENSRNOG00000019134 ENSRNOT00000065483 3 1 3 81 18 57755779 57780268 CACTCATGTGCTAAGGACC 58 57780312 57780331 TCAATGCTGACAGGAATAGC 58 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000076913 1 1 6 92 15 36976284 36978356 GAGTACATGCCATTATGTTCAGAG 60 36972823 36976233 GGGCTAAATGCATCTCCCA 60 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000076913 2 1 6 93 15 36976284 36978356 GAGTACATGCCATTATGTTCAGAG 60 36972822 36976232 TGGGCTAAATGCATCTCCC 60 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000088037 1 1 6 109 15 36972745 36972763 GAACTATACCTGGCCCACC 60 36950456 36972672 TGTTGTAACAACCACTGCG 59 NA Rattus norvegicus 81 Ncstn ENSRNOG00000005355 ENSRNOT00000081534,ENSRNOT00000008150 1 2 2 80 13 90460110 90460129 TTGGCTTATGACGACTTCAG 58 90458701 90460069 TTGATAGCACTGCTTGATGAC 59 NA Rattus norvegicus 81 Ncstn ENSRNOG00000005355 ENSRNOT00000008150 3 1 2 82 13 90461169 90465657 CTGCCAGTCTTCAATTAGTGG 59 90461107 90461128 CATCCGTCAATACCCATTTCAG 60 NA Rattus norvegicus 81 Pfkm ENSRNOG00000057988 ENSRNOT00000088376 2 1 2 151 7 139686344 139702070 CCTATTCTTGAAACCGAGTGG 59 139707077 139707095 AAGATGCCAACTCGTACCA 59 NA Rattus norvegicus 81 Prrg2 ENSRNOG00000020517 ENSRNOT00000082560 2 1 2 191 1 101049522 101049541 GTATCTGCATTATCGACGGC 59 101047201 101047550 CTTCTGAGGCTGGAGTAAGG 60 NA Rattus norvegicus 81 Fbxo7 ENSRNOG00000004637 ENSRNOT00000077577,ENSRNOT00000006366 3 2 2 80 7 23818970 23820424 CTTTCACACGACAAGTGCT 59 23818908 23818927 GGAAGATGCGTAGTTTCAGC 59 NA Rattus norvegicus 81 Abca12 ENSRNOG00000015248 ENSRNOT00000057672 3 1 2 80 9 78573993 78575734 CATGAAAGACAACTTCCTCAC 57 78573933 78573952 GCAGCTATGAATACAACCCA 58 NA Rattus norvegicus 81 Tbce ENSRNOG00000029667 ENSRNOT00000040743,ENSRNOT00000079433 3 2 2 80 17 53991496 53991519 GTAGAAGAGTTGAAGTTAACGGAG 59 53991558 54003854 CTAACCAGAGTCCTGCCAC 60 NA Rattus norvegicus 81 Rbm26 ENSRNOG00000009836 ENSRNOT00000013297 1 1 2 80 15 89307361 89307380 CCCACCTGTGAATCTTAGAC 58 89306848 89307321 GAAATATCATCTGTGACAGGTG 57 NA Rattus norvegicus 81 Rbm26 ENSRNOG00000009836 ENSRNOT00000013255 3 1 2 144 15 89288650 89295928 AAGGTGTTGTCTACATCTACTG 58 89288192 89288545 GAAGTTTCAGTGCCTCCTG 59 NA Rattus norvegicus 81 Tg ENSRNOG00000006104 ENSRNOT00000009240,ENSRNOT00000077382 3 2 3 80 7 107470597 107479317 CACAACTACAACAGGTTTCCAG 60 107479357 107479376 ACAGTACCCAGACACTTCAG 59 NA Rattus norvegicus 81 Fap ENSRNOG00000005679 ENSRNOT00000008148 1 1 2 80 3 48485475 48485494 AACGCTCTGAGAAACATCCA 60 48484955 48485437 CATCTTGTACCAGAAAGTCATTCC 60 NA Rattus norvegicus 81 Lmo2 ENSRNOG00000009401 ENSRNOT00000090365,ENSRNOT00000083527,ENSRNOT00000012625 2 3 3 81 3 93926471 93926489 GCAGGCGAGACTATCTCAG 60 93930958 93930976 GTCATCTCATAGGCACGGA 59 NA DesignNoJunction Rattus norvegicus 81 Lmo2 ENSRNOG00000009401 ENSRNOT00000090365,ENSRNOT00000083527,ENSRNOT00000012625 1 3 3 78 3 93926471 93926489 GCAGGCGAGACTATCTCAG 60 93930955 93930973 ATCTCATAGGCACGGATCC 59 NA DesignNoJunction Rattus norvegicus 81 Alad ENSRNOG00000015206 ENSRNOT00000020625,ENSRNOT00000075916 3 2 4 81 5 78371664 78372596 TTCCCAAGGATGAACAGGG 59 78371601 78371619 AAGGTCTTCCTCAGCAGAC 59 NA Rattus norvegicus 81 Bnc2 ENSRNOG00000006553 ENSRNOT00000067389 3 1 2 81 5 102432562 102432580 GAAATGCATGTCTGCACAG 58 102417195 102432518 TTATGTTGGCACTGTGTCTG 59 NA Rattus norvegicus 81 Gtf3c3 ENSRNOG00000002091 ENSRNOT00000002864 2 1 2 82 9 61000670 61001598 TGGTAGAGGGTATAGAAGTTGAC 59 61000610 61000630 CCCACTGCTCTGATAGATGAG 60 NA Rattus norvegicus 81 Slc5a2 ENSRNOG00000020039 ENSRNOT00000027265 2 1 2 80 1 199687629 199688141 CCTCAGAAGCATCTCCACC 60 199688182 199688203 TAACTCTTCAGCATCCAGATCC 60 NA Rattus norvegicus 81 Adamts2 ENSRNOG00000061484 ENSRNOT00000083568 3 1 2 152 10 36291413 36291431 GCTGTATTCAACCTCTGCA 58 36291547 36293507 CACAGGTTACCGAACACTG 59 NA Rattus norvegicus 81 Comp ENSRNOG00000048472 ENSRNOT00000083281,ENSRNOT00000072536 2 2 2 80 16 20801209 20801227 TTCCAAACAGTTGTGCTGG 59 20801040 20801167 GATCTCCATTCCCTGATTGAG 58 NA Rattus norvegicus 81 Ptcd3 ENSRNOG00000009484 ENSRNOT00000078991,ENSRNOT00000012622 1 2 3 80 4 99810293 99810312 GAATCTTTGCTCTGATGCCA 59 99809463 99810250 CATAAGCTCGGTGCTTCAC 59 NA Rattus norvegicus 81 Ghrhr ENSRNOG00000011808 ENSRNOT00000016087 3 1 4 88 4 85597247 85597267 ATAATTTGCATCCTGCTGAGG 59 85597312 85597482 GACCAGGGTAATAAATAGTTGCAG 60 NA Rattus norvegicus 81 Ufl1 ENSRNOG00000007831 ENSRNOT00000010421 3 1 2 98 5 39618414 39618433 TTTCAGTTCTCAACCCACAG 58 39617743 39618354 AGTATGTTGATCCTCTGGGA 58 NA Rattus norvegicus 81 Ptcd1 ENSRNOG00000000987 ENSRNOT00000076896 3 1 2 83 12 11223690 11223709 CTGAAGACATATCACGCCCT 60 11223750 11224486 GATGATTTCCTTGAAGACTTCCAG 60 NA Rattus norvegicus 81 LOC100912163 ENSRNOG00000016391 ENSRNOT00000022445 1 1 2 80 17 53697902 53697922 TGGAGATGAGAAGACACTGAG 59 53694271 53697863 TGGTCTAGTGTTTCACTTTCAG 58 NA Rattus norvegicus 81 Riok1 ENSRNOG00000014049 ENSRNOT00000084417,ENSRNOT00000018936 1 2 2 80 17 27433732 27433754 GAGATGTGGACATAATGATGAGG 59 27432374 27433698 CAGTCTGGTATAGAATATTGTCCTG 59 NA Rattus norvegicus 81 Arhgef3 ENSRNOG00000014363 ENSRNOT00000019511 1 1 2 80 16 2958428 2958446 TACCTCACTGTCAAGAGGG 58 2958489 2984460 GTTACTAGGTTCCTCGTCCT 58 NA Rattus norvegicus 81 Bud31 ENSRNOG00000000989 ENSRNOT00000001307,ENSRNOT00000076423,ENSRNOT00000076149,ENSRNOT00000088603 1 4 4 80 12 11235613 11235631 CTTCAGGATCCATCACCAG 57 11234574 11235572 TCATAGAGTTCTCTGCTTATGG 57 NA Rattus norvegicus 81 Bud31 ENSRNOG00000000989 ENSRNOT00000001307,ENSRNOT00000076423,ENSRNOT00000076149,ENSRNOT00000088603 2 4 4 80 12 11235613 11235632 TCTTCAGGATCCATCACCAG 59 11234575 11235573 CATAGAGTTCTCTGCTTATGGC 59 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000085050 3 1 8 94 20 1959670 1959825 TGAATACGTGGCTTGGAGAG 60 1959595 1959613 CCAGACACAGATGGGTGAG 60 NA Rattus norvegicus 81 Nat10 ENSRNOG00000008663 ENSRNOT00000012094,ENSRNOT00000044143 1 2 3 80 3 93690251 93690273 GAAGAAGATAAAGAGTGGGACCT 60 93690191 93690210 TAGCGAATGTTTGTGGCTG 59 NA Rattus norvegicus 81 Itpr1 ENSRNOG00000007104 ENSRNOT00000040255,ENSRNOT00000064025,ENSRNOT00000041130 1 3 5 104 4 140450527 140450547 ACCAAAGATAGAGGCTATGGA 58 140463480 140464552 TTCAAGCTCCTCTGTGGAG 59 NA Rattus norvegicus 81 Sh3glb2 ENSRNOG00000017295 ENSRNOT00000085042 3 1 2 81 3 8915077 8919283 ACTCCCTATGGGAAGACAC 58 8915014 8915033 CAGTGTGAATGAAATCCCGT 59 NA Rattus norvegicus 81 Cep104 ENSRNOG00000025000 ENSRNOT00000031138 2 1 2 80 5 171268423 171268444 GGAACTCAAGTCTGTTTATGTG 57 171268485 171268504 ACGTTGTACTTGTTGGTGG 58 NA Rattus norvegicus 81 Krt5 ENSRNOG00000050420 ENSRNOT00000011644 1 1 3 98 7 143323593 143324329 AAGAACAAGTACGAGGATGAG 58 143323405 143323423 CACCTTGTTCATGTAGGCC 59 NA Rattus norvegicus 81 Slc12a8 ENSRNOG00000001792 ENSRNOT00000002439,ENSRNOT00000040167,ENSRNOT00000086495 3 3 3 82 11 70356313 70356331 TACCCTAGCTAGCATGGGT 60 70349285 70356268 ATGCTGATCCGAGGTAAAGG 60 NA Rattus norvegicus 81 Slc12a8 ENSRNOG00000001792 ENSRNOT00000086495 1 1 3 80 11 70399509 70401369 CCCTCTTACATCATCTTTGCC 59 70399449 70399470 TTCAGCTATCAGGAAGTCAGAG 59 NA Rattus norvegicus 81 Eogt ENSRNOG00000024533 ENSRNOT00000077530,ENSRNOT00000039353 2 2 2 80 4 129493037 129493057 GAATCTCTACCTCACTCAGCA 59 129488504 129492995 CCATAAGAGCTGGTGTCCC 60 NA Rattus norvegicus 81 Lman1 ENSRNOG00000024470 ENSRNOT00000032047,ENSRNOT00000085784 1 2 2 80 18 61700391 61700413 GACTTCCGTAATAAACCCTATCC 59 61697278 61700353 GCCATTATTGATCATGACCGT 59 NA Rattus norvegicus 81 Thrb ENSRNOG00000006649 ENSRNOT00000008989,ENSRNOT00000061402 3 2 4 92 15 8920803 8920822 TAGACAAGGATGAGCTCTGC 59 8914486 8920748 TAAAGAAACCCTTGCAGCC 58 NA Rattus norvegicus 81 Il1rap ENSRNOG00000001928 ENSRNOT00000043498 3 1 2 113 11 77474833 77474852 AAGAAGAGGAGTTTGTGCTG 58 77465239 77474757 CTGCTTCCACCGTATTTCC 59 NA Rattus norvegicus 81 Slc25a16 ENSRNOG00000000387 ENSRNOT00000056047 3 1 2 80 20 27287068 27287087 CCCATTTGATGTAACCCGTC 59 27285642 27287025 GTCTCCCTCATGGTAAGGC 60 NA Rattus norvegicus 81 Acsm1 ENSRNOG00000042084 ENSRNOT00000084260 3 1 4 143 1 189328417 189359839 ATTCTCTGCTCAACATTCCCT 60 189359942 189364283 AGGTAGTCCACTGATACTGTG 59 NA Rattus norvegicus 81 Ccdc23 ENSRNOG00000007404 ENSRNOT00000009879 3 1 2 165 5 138246014 138246127 AAGGTCAGAGCTGATCAGG 59 138246254 138250950 TGAGAGCATAGATCTCTGCTC 59 NA Rattus norvegicus 81 Tspan10 ENSRNOG00000046076 ENSRNOT00000071432,ENSRNOT00000070975 1 2 2 80 10 109616705 109616723 CCTCCTTGACCAAGTCCAG 60 109616764 109618492 TTAAAGTACAGGTTCTGTTGCC 59 NA Rattus norvegicus 81 Tom1l2 ENSRNOG00000003590 ENSRNOT00000083093 1 1 2 80 10 46603496 46605418 GACAGACCTGAAGGGTGAC 60 46602544 46602563 GCTTTGGCTCTTTCTTCCAG 60 NA Rattus norvegicus 81 Fry ENSRNOG00000000894 ENSRNOT00000076483 2 1 4 81 12 5575503 5575522 GGAGATCCGAGACATGATCC 60 5574965 5575459 TAGTGCCGGAAACATGGAG 60 NA Rattus norvegicus 81 Abhd6 ENSRNOG00000008167 ENSRNOT00000080794,ENSRNOT00000012271 1 2 2 80 15 18664542 18675303 AATCTATTATTGGTACTGGCGG 58 18664483 18664505 GAGTAACAGAACTGATAGTCCTC 58 NA Rattus norvegicus 81 Rn60_20_0025.1 ENSRNOG00000054295 ENSRNOT00000050246 2 1 1 60 20 2484641 2484659 GCCACCTGAATACTGGGAG 60 2484973 2484991 TGTGATATTCCGTCCCACC 59 NA DesignNoJunction Rattus norvegicus 81 S100a8 ENSRNOG00000011557 ENSRNOT00000015473 1 1 1 61 2 190073945 190073963 ATGGTCACTACTGAGTGCC 59 190074150 190074169 TCTTTGAACAAGCTTTCGGT 58 NA DesignNoJunction Rattus norvegicus 81 Mxra8 ENSRNOG00000019244 ENSRNOT00000091205,ENSRNOT00000067252 2 2 2 80 5 173288636 173289543 TGCTTCTTCAGAGTTCTGCA 60 173289680 173289699 CAGACTCAGACACCACAGAG 60 NA Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000076004,ENSRNOT00000076246 3 2 5 80 X 71310534 71310783 CTTCTGCAAGAAGGAGATCTG 59 71310474 71310492 GCAGAACTCTTGGAAGGAG 58 NA Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000076004,ENSRNOT00000076246,ENSRNOT00000076993,ENSRNOT00000004972 1 4 5 81 X 71311061 71311525 TCCACTGAGAGCATTCCAG 59 71310998 71311016 GGAATGGCACAAAGTCCTC 59 NA Rattus norvegicus 81 Pitrm1 ENSRNOG00000016511 ENSRNOT00000068174 3 1 2 81 17 68487271 68489944 TTCCTCTTACCAGAGAAAGGT 58 68489984 68490005 ACTGATGCTTCATTTGGATCTC 59 NA Rattus norvegicus 81 LOC100910710 ENSRNOG00000007407 ENSRNOT00000085978,ENSRNOT00000010117 1 2 2 109 7 35125532 35125550 TTCAGAATGGAGCAACTGC 59 35125621 35126478 AGCCTTATATCATTTGCCCTG 58 NA InUTR Rattus norvegicus 81 Gabrr2 ENSRNOG00000007490 ENSRNOT00000009973 2 1 2 82 5 48303574 48303592 TGATGGCTCTTGTGGAGAG 59 48303637 48311955 ATACAAGTGACTTGGCTTGG 58 NA Rattus norvegicus 81 Actb ENSRNOG00000034254 ENSRNOT00000042459,ENSRNOT00000080216 3 2 2 80 12 13718146 13718165 GGTCAGGTCATCACTATCGG 60 13718207 13718316 GGATTCCATACCCAGGAAGG 60 NA Rattus norvegicus 81 Trmt11 ENSRNOG00000014240 ENSRNOT00000083276 1 1 2 123 1 29432193 29432211 TGAATCGCTATCTGCTGCT 59 29436642 29440768 GGAGATTTATTCTTTGTCTCCTGAC 60 NA Rattus norvegicus 81 Gjd4 ENSRNOG00000018407 ENSRNOT00000024855 2 1 1 60 17 62299592 62299613 AACTGTAATGTGACCATCATGG 59 62298069 62298088 GCATTCTTAGCAAGACTGCC 60 NA DesignNoJunction Rattus norvegicus 81 Nf1 ENSRNOG00000013780 ENSRNOT00000089538 1 1 2 80 10 66760887 66760906 TGTGTTGGTAAACTCACTCC 58 66762420 66766219 CAATCCAATGCAGAAGCAG 57 NA Rattus norvegicus 81 Ebna1bp2 ENSRNOG00000045760 ENSRNOT00000072245,ENSRNOT00000076672 1 2 2 80 5 137672722 137672741 ACTGAGGTCCTTCAGAAGAG 59 137672783 137673035 ATCAGAGAAGCCTTTCTGGT 59 NA Rattus norvegicus 81 LOC100911833 ENSRNOG00000037188 ENSRNOT00000081488,ENSRNOT00000044408 3 2 6 80 4 154557437 154557458 CTCATTACCATACATTCCTGGG 58 154557499 154560602 TATCTCAGCGTGGTCTGAG 59 NA Rattus norvegicus 81 Erc2 ENSRNOG00000015148 ENSRNOT00000081999,ENSRNOT00000047118 2 2 3 81 16 3568404 3568422 AGCAACACATTGAAGTGCT 58 3568466 3618451 AGTGCATCTACCTCAGTCTG 59 NA Rattus norvegicus 81 Lims1 ENSRNOG00000037765 ENSRNOT00000064288 2 1 2 88 20 27954722 27979742 GAAGAGCTGAGCAACATGG 59 27979793 27979812 TTCACGATCTTCTCAGCAGG 60 NA Rattus norvegicus 81 Camsap1 ENSRNOG00000017883 ENSRNOT00000078020 3 1 2 83 3 3399612 3402033 TGGAAGTTAGTACCCGTCC 58 3399547 3399566 CATCAAGTCCTCCAACAACG 59 NA Rattus norvegicus 81 Btbd10 ENSRNOG00000014341 ENSRNOT00000081767 2 1 2 107 1 178157410 178191947 TTCTAACTGGCACTGCCTC 60 178157321 178157343 ACCTTCGTCTATCTCTTGATCTC 59 NA Rattus norvegicus 81 Serinc4 ENSRNOG00000015499 ENSRNOT00000021008,ENSRNOT00000089433 2 2 3 80 3 113420080 113420205 CCAGAGACAATAATCTTTCAAGGAC 60 113420024 113420043 ATCCGGTATTTGTGGTTCCA 59 NA Rattus norvegicus 81 Usp1 ENSRNOG00000007890 ENSRNOT00000084640 1 1 2 131 5 117590850 117592020 AAACAAAGTTTCTCCAGAGCC 59 117592112 117592131 GCTTCCGTATAATGATGGCA 58 NA Rattus norvegicus 81 Rabgap1l ENSRNOG00000002736 ENSRNOT00000087506 1 1 4 80 13 78227502 78382240 CCTTATCACAAAGGACTCTGC 59 78227442 78227461 TTGAAGTAATCGTGTGCAGG 59 NA Rattus norvegicus 81 Prr36 ENSRNOG00000028892 ENSRNOT00000068586,ENSRNOT00000043197 2 2 2 67 12 2580354 2580372 TCTATTTCTAGCCCAGGGC 59 2581102 2581120 AGTCCCTTCTGGACAACAG 59 NA DesignNoJunction Rattus norvegicus 81 Tac1 ENSRNOG00000007374 ENSRNOT00000009888,ENSRNOT00000052333 1 2 3 80 4 33640463 33640481 TCTTCTTCAGAGAATCGCC 57 33640525 33640981 ATTGAGGAATCAGCATCCC 57 NA Rattus norvegicus 81 Klhl36 ENSRNOG00000016422 ENSRNOT00000022091,ENSRNOT00000081019 1 2 2 81 19 52533164 52533183 GAGCCCTGTCTTCTGTAGAG 59 52533227 52535388 CCATAGGTGAACCTTGGCA 60 NA Rattus norvegicus 81 Plg ENSRNOG00000017223 ENSRNOT00000080352 3 1 2 80 1 48539560 48543154 AACTTCCCAGATGCTTACCA 59 48539499 48539517 AAATGTCTCCCACAGGCTC 60 NA Rattus norvegicus 81 Wtap ENSRNOG00000019091 ENSRNOT00000025936 1 1 2 80 1 47958603 47958624 GGAACAGACTAAAGACAAACTG 57 47958665 47964639 TTGCCTGTTTGGCTATCAG 58 NA Rattus norvegicus 81 Casr ENSRNOG00000002265 ENSRNOT00000003092,ENSRNOT00000078341,ENSRNOT00000086097 2 3 3 80 11 67251994 67252013 CCAAGAAGGGAGAAAGACTC 58 67252056 67254315 AATTGGAGAAAGGCACCTC 58 NA Rattus norvegicus 81 Flvcr2 ENSRNOG00000008754 ENSRNOT00000082402 1 1 4 85 6 109673444 109673800 CATTTGTGGAGCGTAGCTG 59 109674102 109674120 TCCACAGCAAACTCAAAGC 59 NA Rattus norvegicus 81 Flvcr2 ENSRNOG00000008754 ENSRNOT00000089972 3 1 4 86 6 109669578 109673380 CTACAAAGGGACAACCCTG 58 109673430 109673448 AAATGGTTCAGGTGAAGGG 58 NA Rattus norvegicus 81 Flvcr2 ENSRNOG00000008754 ENSRNOT00000011599 1 1 4 93 6 109673394 109673412 TGACTCTGAGTGCTATGGT 58 109673476 109673499 ATGAACTTACCTGTGGAGC 57 NA Rattus norvegicus 81 Pola2 ENSRNOG00000020906 ENSRNOT00000028406 3 1 2 85 1 221298893 221298913 TTCTATACCTATGCCCAGCTG 59 221297895 221298846 CCGAAGATGTCCTTCACGA 60 NA Rattus norvegicus 81 Smim8 ENSRNOG00000023035 ENSRNOT00000035840,ENSRNOT00000089172 3 2 4 61 5 50232939 50232958 AACAACCTTGTTTCGAGCTG 59 50231070 50232916 CCATCACAGGTTTGTTAGGT 58 NA DesignRelaxed Rattus norvegicus 81 Rn60_5_1638.1 ENSRNOG00000054155 ENSRNOT00000087949 2 1 2 60 5 159981520 159981539 GTAGTTTGGTGGGATCTGTC 58 159981479 159981498 AAAGACTCCCAAATTCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_1638.1 ENSRNOG00000054155 ENSRNOT00000087949,ENSRNOT00000086800 3 2 2 60 5 159981815 159981833 CTCAAGAACCAACCAGGGA 59 159981773 159981793 CCCACAGAACATAACAAAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdgfrb ENSRNOG00000018461 ENSRNOT00000068535,ENSRNOT00000086033,ENSRNOT00000078764 2 3 3 80 18 56395287 56395306 AGATCATGAGTCATCTCGGA 58 56395349 56397824 TAATGTAGATGGGCCCTCC 58 NA Rattus norvegicus 81 Pdgfrb ENSRNOG00000018461 ENSRNOT00000068535,ENSRNOT00000086033,ENSRNOT00000078764 1 3 3 80 18 56394494 56394512 TCATGAGTCATCTCGGACC 59 56394554 56396614 TGATAATGTAGATGGGCCCTC 59 NA Rattus norvegicus 81 Megf11 ENSRNOG00000010634 ENSRNOT00000050649 1 1 4 80 8 70183959 70184593 ATATGAAGTTGAGCCCACAG 58 70184636 70184654 AGGTCGTATGGATTCTGGA 58 NA Rattus norvegicus 81 Rbak ENSRNOG00000001099 ENSRNOT00000077986,ENSRNOT00000001455 2 2 2 84 12 13430075 13438069 ATATCAAAGGGCCCACTGTC 60 13438116 13438134 TCCTCTCCTCAGAGTCCAG 59 NA InUTR Rattus norvegicus 81 LOC100911293 ENSRNOG00000027295 ENSRNOT00000024207,ENSRNOT00000057704,ENSRNOT00000024176 3 3 3 86 8 72622356 72622374 AACACCCTGTCTAATGCCT 59 72480036 72622309 CGTCATGAAAGCTGAATTAAGG 58 NA Rattus norvegicus 81 Top3a ENSRNOG00000005099 ENSRNOT00000068351 1 1 2 80 10 46992250 46992866 AAACTGATGCTCACCCTCC 60 46991221 46991239 TGAACTCATACAGTCGCCG 60 NA Rattus norvegicus 81 Ciz1 ENSRNOG00000013442 ENSRNOT00000037399 3 1 2 81 3 11406999 11407018 ACTGTTCACCTCTAGCAGTG 60 11407061 11407886 CATGCTGTATGACTTGCTGG 59 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000045082,ENSRNOT00000003741,ENSRNOT00000076450,ENSRNOT00000076503,ENSRNOT00000076456,ENSRNOT00000088114 1 6 7 87 X 70645330 70646351 CTTTACAGCCATTGTACAGGG 59 70646400 70646418 AATGTAGTGCCCAGACTGG 59 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000076450 3 1 7 123 X 70597270 70600494 TATGAGCAGGTGAATGGCA 59 70600977 70600995 GGTCATCAGGGACATGAGG 60 NA Rattus norvegicus 81 Slc1a3 ENSRNOG00000016163 ENSRNOT00000022319,ENSRNOT00000085599,ENSRNOT00000077790 3 3 4 80 2 57933405 57933423 GGATGTGAAGAGCTACCTG 57 57912984 57933362 AATCCAAGGATTGTACCCAC 58 NA Rattus norvegicus 81 Orc3 ENSRNOG00000008314 ENSRNOT00000011085 3 1 2 85 5 50068705 50072280 GATCTCTGTGCCAATAGAGGA 59 50068640 50068661 GCAAGCGATATGTTTCAAATCG 59 NA Rattus norvegicus 81 Rnf157 ENSRNOG00000049862 ENSRNOT00000075293,ENSRNOT00000072230 3 2 2 80 10 105319451 105320989 GACTTGTCAAATGTGCTGAG 57 105319390 105319408 TGAACTCGACGTTGTAGTG 58 NA Rattus norvegicus 81 Pla2g16 ENSRNOG00000021206 ENSRNOT00000032879,ENSRNOT00000090872 3 2 2 80 1 222862262 222862280 GCCCTATGTACAGTCACTG 57 222862324 222869436 CTCCTGGGATTTCACTTGG 58 NA Rattus norvegicus 81 Kcnma1 ENSRNOG00000005985 ENSRNOT00000077671 1 1 4 93 15 819768 819786 GTCTACAGTGGGTTACGGG 60 819843 837333 ACTACAATGTGCCAGTCCC 60 NA Rattus norvegicus 81 Sel1l ENSRNOG00000004464 ENSRNOT00000006143 3 1 2 80 6 115609366 115609388 GTTGATTCTGGACTCAGAGGT 60 115609306 115609324 GTGACACTGACTTCCTCCT 59 NA Rattus norvegicus 81 Ube2a ENSRNOG00000039985 ENSRNOT00000083861,ENSRNOT00000061455 3 2 2 80 X 123495226 123496117 CACCCTAACGTCTATGCAG 58 123496159 123496179 GGAAGACACATCATAGGTTGG 59 NA Rattus norvegicus 81 Arnt ENSRNOG00000031174 ENSRNOT00000091681 1 1 3 149 2 196638216 196638310 AAGTAACCAGTTCTCCTAACTG 58 196638420 196641476 TTCCTAAGAGCTCCTGTGG 58 NA Rattus norvegicus 81 Shprh ENSRNOG00000014450 ENSRNOT00000088292 2 1 2 82 1 5248351 5250567 TGCTGGTGATAACTCCCTG 59 5250608 5250631 CTGTGTACGGATTATAGTAGAGGT 59 NA Rattus norvegicus 81 Smarcal1 ENSRNOG00000016503 ENSRNOT00000071856,ENSRNOT00000022459 1 2 2 80 9 79988099 79989911 ACTACCTCTACAAGGACCC 57 79989955 79989973 CCATGTCATTCCCATCGTC 58 NA Rattus norvegicus 81 tGap1 ENSRNOG00000022511 ENSRNOT00000082912,ENSRNOT00000033404,ENSRNOT00000065774,ENSRNOT00000089422 3 4 4 80 2 92587146 92592337 AAGGTCCTCCAGAGAAATGTG 60 92592378 92592397 TCTTTGCAGGTCGTAATGGA 60 NA Rattus norvegicus 81 Ltbp4 ENSRNOG00000020871 ENSRNOT00000028322,ENSRNOT00000081796 2 2 2 80 1 84136753 84136771 GAAGGGAGCTTCAAGTGTG 59 84136604 84136709 ACACTCATCCACATCCTCG 59 NA Rattus norvegicus 81 Daglb ENSRNOG00000001079 ENSRNOT00000067332 2 1 2 80 12 13138669 13138913 ATGTATGCACATTGGAACCC 59 13133195 13133216 ATACTCTATGTCTCTGCCTCTG 59 NA Rattus norvegicus 81 Pik3ap1 ENSRNOG00000013309 ENSRNOT00000065632 1 1 3 164 1 260552335 260557891 TTCTAAAGAGCCGCTTGTG 58 260552189 260552207 TCTTTGAAGTGCAGCACAG 59 NA Rattus norvegicus 81 Mcemp1 ENSRNOG00000028259 ENSRNOT00000084431 3 1 2 110 12 2213722 2213740 CAACCCAGAAGAATGCAGG 59 2213901 2214014 AGGATTGTGAGCACCTCTG 59 NA Rattus norvegicus 81 Trak2 ENSRNOG00000010881 ENSRNOT00000015034,ENSRNOT00000014939 1 2 3 80 9 65704155 65704174 ACTCAACATTCACCTTCACC 58 65702277 65704112 ATGGGAAACCAGAGCTAGG 59 NA Rattus norvegicus 81 Drd2 ENSRNOG00000008428 ENSRNOT00000045944 2 1 2 100 8 53736723 53736741 AATCTACATCGTCCTCCGG 59 53736805 53737777 TACAGTTGCCCTTGAGTGG 60 NA Rattus norvegicus 81 Gtf2b ENSRNOG00000011135 ENSRNOT00000089648 2 1 2 81 2 248722153 248723256 CTGGTAATAGGTGTGGTAACTG 58 248723295 248723316 CTGAAAGTTCTCCATTCAGACC 59 NA Rattus norvegicus 81 Letmd1 ENSRNOG00000029855 ENSRNOT00000042786,ENSRNOT00000088681 2 2 2 80 7 142109763 142109782 CAAGTGTCTCTTCATAGGCC 58 142109822 142111977 CTAGGAAACAGGTACATTAGCA 58 NA Rattus norvegicus 81 Sox5 ENSRNOG00000027869 ENSRNOT00000055542 2 1 2 80 4 178389960 178441448 CTCAGGAGTTTGAAAGGATGTC 59 178389901 178389919 TTGTCACCATGGCTACCTC 59 NA Rattus norvegicus 81 Cnga3 ENSRNOG00000051950 ENSRNOT00000089571,ENSRNOT00000081651 2 2 5 81 9 43821828 43821850 GAGACAACTTTCAGTAAAGGACG 60 43821891 43831187 ACATGGTGAGTGAGACCTG 59 NA Rattus norvegicus 81 Gmps ENSRNOG00000051151 ENSRNOT00000076292 1 1 3 80 2 154559801 154559822 GTACAGTCTGAAATCTTTCCCT 58 154559860 154561758 TCCAGATATGATAATAGCCCGA 58 NA Rattus norvegicus 81 Impa2 ENSRNOG00000018516 ENSRNOT00000025147,ENSRNOT00000081432 1 2 3 80 18 63016852 63029314 GTGCGGGACAAATCATCAG 59 63029358 63029376 CTGTCACAAGATCTGCAGC 59 NA Rattus norvegicus 81 Cnih1 ENSRNOG00000009811 ENSRNOT00000013331 3 1 2 81 15 23576509 23576530 TAGCATTTGATGAGCTGAAGAC 59 23572672 23576468 TACTCTGGAAGCACAAGAGG 59 NA Rattus norvegicus 81 Trrap ENSRNOG00000025244 ENSRNOT00000076323,ENSRNOT00000030545 3 2 3 80 12 11624360 11624380 CTCTCACGGATGTGAATACAC 59 11618847 11623968 ATGTGACATTCTCGAAGTTCTC 59 NA Rattus norvegicus 81 Ptprj ENSRNOG00000034025 ENSRNOT00000077943,ENSRNOT00000049832 2 2 2 98 3 79258840 79259952 AAATCCAAGTTAATCCGAGTGG 59 79257515 79258785 CTTCAGATCCTCATATTCCTCTG 58 NA Rattus norvegicus 81 Tjp3 ENSRNOG00000020501 ENSRNOT00000089004,ENSRNOT00000027847 1 2 2 80 7 11306846 11307048 GACCTTATCTTACAGATCAACGG 59 11307087 11307106 CTCTGACTTCTCAATGAGCC 58 NA Rattus norvegicus 81 Echdc3 ENSRNOG00000048114 ENSRNOT00000086701,ENSRNOT00000070895 2 2 2 106 17 76008900 76016082 GTTCTGAGGTCATGATGCTG 59 76016151 76016169 AATATCACAGCTGGCAACC 58 NA Rattus norvegicus 81 Dip2a ENSRNOG00000043212 ENSRNOT00000066017,ENSRNOT00000083878 3 2 2 80 20 13113954 13114979 AAGATGATTGTCGAGGTCAG 58 13115022 13115040 TGCTTCTTTGGACTTGAGC 58 NA Rattus norvegicus 81 Ddx19a ENSRNOG00000018033 ENSRNOT00000082566,ENSRNOT00000091788,ENSRNOT00000087474,ENSRNOT00000084462 3 4 5 99 19 43234661 43234679 GAGCTGGCTCTTCAAACAG 59 43234739 43237112 CTCTTTCCAATTTATTGCCTCG 58 NA Rattus norvegicus 81 Fcgr1a ENSRNOG00000021199 ENSRNOT00000082450 2 1 2 135 2 198439031 198457796 GTGGACATGTTCCAGTTGG 59 198437846 198437864 GAACTGTCTCCCAGGTGAG 59 NA Rattus norvegicus 81 Ropn1l ENSRNOG00000042781 ENSRNOT00000090540 2 1 2 80 2 84522999 84523018 ATTGGATCCAGAATTCTCGG 58 84522076 84522958 ACACTTCCTGAGATAATCGAC 57 NA Rattus norvegicus 81 Phrf1 ENSRNOG00000017299 ENSRNOT00000051755 3 1 2 96 1 214230385 214230403 CTGAAGAGGAAGACCCGAC 60 214230463 214233893 ATGTGGTACCCAGCATCAC 60 NA Rattus norvegicus 81 Phf14 ENSRNOG00000005775 ENSRNOT00000047029 1 1 3 80 4 38241357 38250876 AGAAGTTGAAACACTACGCC 59 38250918 38250937 TCATCTGTATGACGGGTCTC 59 NA Rattus norvegicus 81 LOC100911660 ENSRNOG00000047104 ENSRNOT00000088148,ENSRNOT00000073015 3 2 2 80 1 257902411 257912905 AAGATGTTAGAAGAGGCTCG 57 257912947 257912966 TTCAAGCAAATGTTGCAGTC 58 NA Rattus norvegicus 81 Fbxo31 ENSRNOG00000042274 ENSRNOT00000068764,ENSRNOT00000079651 1 2 3 81 19 53609229 53612065 CTATGCCAAGCTGCTTCAC 59 53609166 53609185 GTTCAGCAATCCTCCATACG 59 NA Rattus norvegicus 81 Frmd4a ENSRNOG00000018500 ENSRNOT00000081645 3 1 2 80 17 77647643 77647661 CACCGTCAAGTGAAATTGG 57 77645514 77647600 TTTCTGTTGCTTCTCCAGTC 58 NA Rattus norvegicus 81 Clec18a ENSRNOG00000022721 ENSRNOT00000048900 3 1 2 107 19 43163689 43164288 CCATTGTGCAAGCCTTGAG 60 43164357 43166172 AATCCATTCTCTGCATGTTGG 59 NA Rattus norvegicus 81 Usp45 ENSRNOG00000008688 ENSRNOT00000083132 3 1 2 80 5 35972268 35973554 TTCTGCAGAAAGGAAGGCA 60 35973596 35973616 ATTAGGATAGCTGGAACAGCA 59 NA Rattus norvegicus 81 Csn1s1 ENSRNOG00000055596 ENSRNOT00000088491,ENSRNOT00000087923 2 2 2 81 14 21998355 21998858 CTGGCACAGAAACATCATCC 59 21997904 21997923 GGCTGTATGCATTCATCCTG 59 NA Rattus norvegicus 81 Runx1t1 ENSRNOG00000005673 ENSRNOT00000078102 3 1 2 87 5 27313141 27313160 AAGAAACACTTGGAGAGCAC 59 27313209 27386166 CTTCTCGGTACGATCTTGAC 58 NA Rattus norvegicus 81 Sptssb ENSRNOG00000009388 ENSRNOT00000091198,ENSRNOT00000012422 1 2 2 72 2 166681794 166681812 GCATCTAAGCTCACTCAGC 58 166655587 166655605 TTCACACGCTTGAAATCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Sptssb ENSRNOG00000009388 ENSRNOT00000091198,ENSRNOT00000012422 2 2 2 73 2 166681794 166681812 GCATCTAAGCTCACTCAGC 58 166655586 166655604 CTTCACACGCTTGAAATCC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Grhl2 ENSRNOG00000007000 ENSRNOT00000009337,ENSRNOT00000079692 3 2 2 80 7 76136436 76159325 GAGGCGAAGATCTTCATCAC 59 76159366 76159386 CATCAGAGGAAGTCCTTTCAC 59 NA Rattus norvegicus 81 Pacsin2 ENSRNOG00000009756 ENSRNOT00000067913 2 1 4 82 7 124230076 124233808 AGGATGAAGAGTGGTCTGC 59 124230012 124230031 TGTTAGGGTGACACCATCAG 60 NA Rattus norvegicus 81 Fbxl19 ENSRNOG00000018986 ENSRNOT00000090428 3 1 2 99 1 199199907 199200932 AACTGGGAGAAACCAAAGC 58 199200995 199201013 ACATACGCTTGAAACGCTC 59 NA Rattus norvegicus 81 Slc12a6 ENSRNOG00000005196 ENSRNOT00000007144 1 1 2 83 3 103753443 103753461 CTTCTCTGGCAACTGTTGC 60 103753508 103806658 AGTTCTGATTCGGGTCCTC 59 NA Rattus norvegicus 81 Suco ENSRNOG00000026542 ENSRNOT00000087323,ENSRNOT00000084058 2 2 4 120 13 79740183 79744859 CTGGCAAAGAAGTAGACCC 58 79738395 79738414 TCTGCAGGCTTTATTGTCTC 58 NA Rattus norvegicus 81 Pnkd ENSRNOG00000014806 ENSRNOT00000046229 3 1 3 114 9 81566949 81566967 CACCAGAATGCAAGGAGGA 60 81567045 81628381 GTGTACAGGCTGTACCAGG 60 NA Rattus norvegicus 81 Alg3 ENSRNOG00000001712 ENSRNOT00000002331,ENSRNOT00000073703 2 2 2 80 11 83990373 83990391 AAGTATTCTGTCGCTGCTG 58 83990433 83991150 ACGGAGACAATCTGATTAGGT 59 NA Rattus norvegicus 81 Tmc5 ENSRNOG00000036760 ENSRNOT00000055103 3 1 2 80 1 188316052 188316071 TCATGGACTTCGTGTTCTCC 60 188319076 188319097 TGCTGATGACTTTCATCCCA 60 NA Rattus norvegicus 81 Mbp ENSRNOG00000016516 ENSRNOT00000022303,ENSRNOT00000022280 1 2 5 85 18 79413266 79413284 TACCCTGGCTAAAGCAGAG 59 79413331 79424851 GTGTGAGTCCTTGTACATGTG 59 NA Rattus norvegicus 81 Pde7b ENSRNOG00000013436 ENSRNOT00000018556 1 1 2 87 1 16109251 16109271 CTGAGCAGAATGTCAAATGTG 58 15974752 16100586 CTTAGTCGTACATCTCCTTGG 58 NA Rattus norvegicus 81 LOC100912655 ENSRNOG00000047568 ENSRNOT00000042677 2 1 3 80 12 21061500 21061519 ATCACAGGAACAACATGGGA 59 21017205 21061457 TCCAATGCTTAGCTGTGGA 59 NA Rattus norvegicus 81 Rufy3 ENSRNOG00000003428 ENSRNOT00000004776 1 1 3 84 14 21127747 21127765 TGGATGGAGAATGGCTCTG 59 21103514 21127704 TAATTAGGATCTTCATGGGTAGGC 60 NA Rattus norvegicus 81 Card6 ENSRNOG00000001271 ENSRNOT00000039057 3 1 2 81 2 54813564 54813584 CCACTCATCTGAATCCCTCTC 60 54813346 54813524 TTGGGAAGATTAGAGTGAGTGG 60 NA Rattus norvegicus 81 Cyp2d3 ENSRNOG00000029179 ENSRNOT00000092017,ENSRNOT00000044470 1 2 4 120 7 123637577 123637595 CAATGGACTGAAGGCAGTG 59 123637215 123637493 AAGCACCACACCTTTAGCT 60 NA Rattus norvegicus 81 Ogt ENSRNOG00000003359 ENSRNOT00000004692 1 1 2 165 X 71541178 71543908 ACAGGGTTAGCTGAGTTGG 59 71544037 71544834 AGTGAGCAGATCTGTCCAG 59 NA Rattus norvegicus 81 Prss36 ENSRNOG00000033343 ENSRNOT00000090368 1 1 2 80 1 199381339 199382252 TTGCTGGGTGAATTCTGGT 60 199381277 199381298 TTTGAGAGGGTTCTGTATCCAG 60 NA Rattus norvegicus 81 Dfnb31 ENSRNOG00000001700 ENSRNOT00000002309 3 1 2 146 5 79235718 79236168 GATCGTCACAATTCAGCGAG 60 79235591 79235609 TTGGTCTTGAAGGCCTCAG 60 NA Rattus norvegicus 81 Immt ENSRNOG00000009097 ENSRNOT00000086291 2 1 2 80 4 99769646 99769664 GACCACCTGAAGAAGTTGC 59 99769707 99773153 AACTCTTGGCTAGAGACTCC 59 NA Rattus norvegicus 81 Pigr ENSRNOG00000004405 ENSRNOT00000088449 3 1 3 102 13 47589323 47589341 GAGGCAAATGACACATGGG 59 47589573 47589593 CTTTCTTGGATTCCTCGGTC 58 NA Rattus norvegicus 81 RGD1310507 ENSRNOG00000009434 ENSRNOT00000083855 2 1 3 83 8 111768498 111770118 TACTATGGATCCAAAGATGATCCTC 60 111768439 111768457 CTGGTTTAGCTGGAAGCCT 60 NA Rattus norvegicus 81 Zfp507 ENSRNOG00000013565 ENSRNOT00000092121 1 1 2 80 1 92091309 92091329 ACCAGAACTACAACTATGAGC 58 92087489 92091268 AAGTTTCTCTACTTGGGCTG 58 NA Rattus norvegicus 81 Gldc ENSRNOG00000011599 ENSRNOT00000067612 3 1 2 80 1 248308237 248313507 TGAATGCCCAGATGATGGG 60 248308175 248308193 GTTTGGCCATGTAGTTGGC 60 NA Rattus norvegicus 81 Slc19a2 ENSRNOG00000002839 ENSRNOT00000076752,ENSRNOT00000003817 1 2 3 68 13 82562071 82562089 CATCTACAATGGCGGTGTG 59 82563169 82563187 TAACCAACCGCAAACACAG 59 NA DesignNoJunction Rattus norvegicus 81 Nsmf ENSRNOG00000008810 ENSRNOT00000048353,ENSRNOT00000012129 3 2 5 115 3 2263966 2263988 GGATGTATAGTGTTGATGGAGTG 59 2264996 2266783 GAAGTTCGAGATGGCTTGC 59 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000083657,ENSRNOT00000077092,ENSRNOT00000001098,ENSRNOT00000090039 1 4 6 80 20 3429878 3429898 AGTACTGGACATCTTAAGCCG 60 3428149 3429837 TTGTTGTGATTCACCTGGGA 60 NA Rattus norvegicus 81 Trip4 ENSRNOG00000016121 ENSRNOT00000085745 1 1 2 131 8 71509764 71533176 GACTATTGCTGGAGTTGCC 59 71509651 71509669 TAGGGTTCCGTAAGTTCGC 60 NA Rattus norvegicus 81 Sgsm2 ENSRNOG00000027194 ENSRNOT00000034298,ENSRNOT00000079926 1 2 2 80 10 61706682 61707878 CTCATCCAGATCTTGGACTC 57 61706621 61706642 GCGATAACAGAAATAGAAGTGG 57 NA Rattus norvegicus 81 Ctse ENSRNOG00000006963 ENSRNOT00000009241 1 1 2 101 13 48446377 48446395 ATAGTGGACACAGGGACCT 60 48446459 48448794 CACCAAGTCTTCTCCATCCA 60 NA Rattus norvegicus 81 Ctse ENSRNOG00000006963 ENSRNOT00000009241 2 1 2 102 13 48446376 48446394 CATAGTGGACACAGGGACC 60 48446459 48448794 CACCAAGTCTTCTCCATCCA 60 NA Rattus norvegicus 81 Adamts14 ENSRNOG00000000563 ENSRNOT00000090004 2 1 2 90 20 30839341 30840320 TACCTCCCATCCTACAATTGC 60 30839271 30839289 CCATGGAGTAGTCGATCCC 59 NA Rattus norvegicus 81 Ubr7 ENSRNOG00000008108 ENSRNOT00000010739 2 1 2 89 6 126645255 126645274 GATTTCCAGGAGATGGTGTG 58 126645326 126647032 AGGTAATCTGGTGACTGCC 59 NA Rattus norvegicus 81 Usp14 ENSRNOG00000014981 ENSRNOT00000020537 1 1 2 80 18 1203168 1204584 GCAACTGCTATGGAGTTGC 60 1203106 1203126 GCGAATACACTGAACTGTAGC 60 NA Rattus norvegicus 81 LOC100910881 ENSRNOG00000046647 ENSRNOT00000072803 1 1 2 80 17 90205182 90217424 CAACGTGCAGATAAATACTGAG 58 90205123 90205141 TCCTCAGGAATCTTACGGT 57 NA Rattus norvegicus 81 Atp7a ENSRNOG00000061367 ENSRNOT00000089381,ENSRNOT00000080141,ENSRNOT00000091527 3 3 3 86 X 77120037 77135885 GTCCATCACATTAAAGTTTCCC 58 77135932 77135950 TTCTTGGAGGGTCTTTGGA 58 NA Rattus norvegicus 81 Rock1 ENSRNOG00000031092 ENSRNOT00000061777 1 1 2 80 18 1285602 1285623 TTTCGGATTCAACTAGTGTTGC 60 1280843 1285564 AACCTTCAATTCTTGACTCTGG 59 NA Rattus norvegicus 81 Ggcx ENSRNOG00000012975 ENSRNOT00000086820,ENSRNOT00000017927 1 2 3 80 4 100292170 100292188 AATAGCCCTTTGCATGAGC 59 100292232 100292534 TCGAGTCATCAGGAAGCTG 59 NA Rattus norvegicus 81 Cyhr1 ENSRNOG00000014811 ENSRNOT00000077172 2 1 4 99 7 117711149 117711167 TCGATGAGATGGACCAGAG 58 117710666 117711087 CAGTGAACATCTGTGTAGCC 59 NA Rattus norvegicus 81 Mmp9 ENSRNOG00000017539 ENSRNOT00000088776 2 1 2 80 3 161417860 161417878 GCAAAGTTGAACTCAGCCT 59 161418171 161418190 TGTGTACACCCACATTTGC 59 NA Rattus norvegicus 81 Sun1 ENSRNOG00000001299 ENSRNOT00000089418,ENSRNOT00000047287 2 2 2 80 12 17513532 17513550 CCAGACTGTTGACACTCAC 58 17512017 17513490 CTTCTCTGTTTGACTGTCCTG 59 NA Rattus norvegicus 81 Fbln5 ENSRNOG00000050539 ENSRNOT00000007004,ENSRNOT00000084815 2 2 2 89 6 125656209 125656227 TTGCTACAATCTGCAAGGG 58 125652927 125656156 CACATACAGCGGTTATCCC 58 NA Rattus norvegicus 81 Acox1 ENSRNOG00000008755 ENSRNOT00000046754 2 1 2 80 10 104732211 104732993 AGAGATGGGTCATGGAACTC 59 104732150 104732170 TTGAGAATGAACTCTTGGGTC 58 NA Rattus norvegicus 81 Epha5 ENSRNOG00000002024 ENSRNOT00000002793 1 1 3 80 14 25796229 25796248 AGTTTCCGACTTGAGTCCAG 60 25796291 25859223 GTGACTGGAGAAGGAGCTG 60 NA Rattus norvegicus 81 Kcnh1 ENSRNOG00000003841 ENSRNOT00000005209,ENSRNOT00000077014 2 2 2 80 13 111159904 111159924 AGAATTCTACACAGCCTTCTC 58 111159966 111227053 CGGAACACAATCCTCTTCC 58 NA Rattus norvegicus 81 Rnf112 ENSRNOG00000002364 ENSRNOT00000003228,ENSRNOT00000085011 3 2 2 80 10 47721205 47721223 TGTTACCTCCTTCCTGCTC 59 47721043 47721163 GAAGTCATCTTCTGTGTTGCC 60 NA Rattus norvegicus 81 St6gal1 ENSRNOG00000001823 ENSRNOT00000002499,ENSRNOT00000002496 1 2 3 80 11 80933953 80967274 CTAATGAACTCTCAGTTAGTCACC 59 80933896 80933918 CCATACAATTAGGATTCCTTCGG 59 NA Rattus norvegicus 81 Dym ENSRNOG00000018425 ENSRNOT00000024950 3 1 2 87 18 71221116 71221134 ACAACAAGGTTCTGGAGCA 60 71221185 71251381 AGGTCCTGGGCATAATCTG 59 NA Rattus norvegicus 81 Pam ENSRNOG00000033280 ENSRNOT00000043451 3 1 3 80 9 111173237 111173255 GGTTATTCCTGTGCTGGTC 58 111173299 111176044 CGGTCATGATCTCCAAAGG 58 NA Rattus norvegicus 81 Stxbp1 ENSRNOG00000015420 ENSRNOT00000021189 1 1 2 80 3 11831594 11831612 GTGAGCCTGAATGAGATGC 59 11830145 11831552 GTGAGTAGAACCTATGAGCAC 58 NA Rattus norvegicus 81 Abca16 ENSRNOG00000015783 ENSRNOT00000088121 3 1 2 97 1 190229541 190229914 TATGTCCTACTCGTTTGGCT 59 190229968 190229992 GTCCAACATTCCATAGTATTCAGAG 60 NA Rattus norvegicus 81 Abca16 ENSRNOG00000015783 ENSRNOT00000001933 2 1 2 80 1 190222035 190222054 ACTCATGTTCTCTTCCATCG 58 190222096 190223305 AGCTGGTACTCCTTTAACCT 58 NA Rattus norvegicus 81 Klhl23 ENSRNOG00000007981 ENSRNOT00000088351,ENSRNOT00000010508 1 2 2 80 3 56063550 56063570 AGGTGCAGAGTTACAATTCAG 58 56063610 56067512 CTGAGCACAGTCCATATTCTG 59 NA Rattus norvegicus 81 AABR07069698.1 ENSRNOG00000050232 ENSRNOT00000007903 2 1 1 69 8 37704183 37704201 TGCAATATGGTACATCGCT 57 37702372 37702393 GTGTCAAGACTCAATAAAGAGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fis1 ENSRNOG00000001420 ENSRNOT00000083471,ENSRNOT00000001924 3 2 3 90 12 22750797 22751048 CCATGAAGAAAGATGGACTGG 59 22750727 22750745 ACAGCCAGTCCAATGAGTC 60 NA Rattus norvegicus 81 Smoc2 ENSRNOG00000014166 ENSRNOT00000019317,ENSRNOT00000079718 3 2 2 185 1 56242593 56289144 GTTCTTGAGAGTCGATCAAGAC 59 56289290 56299802 CACCTGGACACATCTTTGC 59 NA Rattus norvegicus 81 Cchcr1 ENSRNOG00000050233 ENSRNOT00000089790,ENSRNOT00000081015,ENSRNOT00000084918 3 3 3 80 20 3731249 3731429 AGTCTATGAAAGGCTCCCTG 59 3731188 3731207 AAATAGCGTCGTCTCTGGAG 60 NA Rattus norvegicus 81 Ten1 ENSRNOG00000060307 ENSRNOT00000083022,ENSRNOT00000086382 1 2 3 85 10 105085654 105085673 CCTGGGACCTATTACTTCCC 59 105085719 105086530 AGATACAACCTGCCAAATGTC 59 NA Rattus norvegicus 81 Rn60_2_2279.2 ENSRNOG00000051203 ENSRNOT00000076549 2 1 2 87 2 208557034 208557756 CACCATCAGAACAATCTCCA 58 208556406 208556424 GGCCAGGATTAAGTGTTCC 58 NA Rattus norvegicus 81 Rn60_2_2279.2 ENSRNOG00000051203 ENSRNOT00000076549 3 1 2 87 2 208557033 208557756 CACCATCAGAACAATCTCCAC 59 208556406 208556424 GGCCAGGATTAAGTGTTCC 58 NA Rattus norvegicus 81 Ywhag ENSRNOG00000001436 ENSRNOT00000001954,ENSRNOT00000084730 1 2 2 80 12 23789798 23789816 CAACTAGTGCAGAAAGCCC 59 23789859 23814659 CTCTGTCACGTTCTTCATGG 59 NA Rattus norvegicus 81 Gcgr ENSRNOG00000036692 ENSRNOT00000054962,ENSRNOT00000083601 1 2 3 157 10 109713438 109713551 GAGATCGAGGTCCAGAAGG 59 109713761 109713779 TTCCCGTGGATGTAGTTCC 59 NA Rattus norvegicus 81 Syne3 ENSRNOG00000005287 ENSRNOT00000035826,ENSRNOT00000082152 3 2 2 80 6 128671880 128671898 GGAACTTGTCATCTTCCCG 58 128670662 128671839 CCCTTCATACTTTGGTATTCCT 58 NA Rattus norvegicus 81 Wdr77 ENSRNOG00000016394 ENSRNOT00000076654,ENSRNOT00000086279,ENSRNOT00000022571 1 3 3 80 2 208580954 208583458 ATTCATACCGAGCTCATGC 58 208583500 208583520 CACTGCATGAAAGAAACACAG 58 NA Rattus norvegicus 81 LOC100911980 ENSRNOG00000045632 ENSRNOT00000086054 3 1 2 90 15 29209015 29209033 TTCAGTGCAAGAGTCAGAC 57 29209084 29209261 CGTTTCTCTAATGATTTCTCCC 57 NA Rattus norvegicus 81 Kng1l1 ENSRNOG00000030387 ENSRNOT00000080949,ENSRNOT00000080562 3 2 5 80 11 81424329 81426407 AAGCGCTAGACATGATTTCTG 59 81424266 81424287 TAGTTTCTTGTACTTGCACCAG 59 NA Rattus norvegicus 81 Smad2 ENSRNOG00000018140 ENSRNOT00000046847,ENSRNOT00000092173 3 2 3 80 18 72571604 72593010 CATACCAAGCACTTGCTCTG 59 72593052 72593071 CTGTAAAGGCCTGTTGTGTC 59 NA Rattus norvegicus 81 Lrrc63 ENSRNOG00000038291 ENSRNOT00000079097,ENSRNOT00000058294 1 2 2 80 15 57166039 57169057 TTCGTATAGTACAAACAGGCTC 58 57165980 57165998 TCACTAAAGCGCTTTCCTC 58 NA Rattus norvegicus 81 Ciart ENSRNOG00000042717 ENSRNOT00000056322,ENSRNOT00000085632 1 2 2 80 2 197988353 197989385 CATCAGATAAGCAAGCACTTCC 60 197988294 197988313 GCCCATCTTCCCTATGAGAG 60 NA Rattus norvegicus 81 Zfp286a ENSRNOG00000003218 ENSRNOT00000004294,ENSRNOT00000084418 2 2 2 81 10 49191267 49191286 CTACGATTCGGAAGATGGGA 59 49188369 49191223 TCTGGTTTCCACGTCTGAG 59 NA Rattus norvegicus 81 Pifo ENSRNOG00000016842 ENSRNOT00000049155 2 1 2 81 2 208633782 208633800 ACCTGACAAGACCAAAGAG 57 208623052 208633737 ATTCACCTTCCCATGAGTG 57 NA Rattus norvegicus 81 Pomt1 ENSRNOG00000010477 ENSRNOT00000015214,ENSRNOT00000082794 3 2 2 80 3 11257484 11257502 GAAGCGTGTCTTCTTCCTG 59 11257546 11257697 AATCCTCCTAGCCAACCTC 59 NA Rattus norvegicus 81 Cdk5rap2 ENSRNOG00000005788 ENSRNOT00000083340 1 1 2 80 5 86503226 86503244 AACTCACTGCTGACTCCAC 60 86498549 86503183 CACAGTTCTCAGACTCCTCG 60 NA Rattus norvegicus 81 Foxm1 ENSRNOG00000005936 ENSRNOT00000008012 2 1 2 80 4 161690842 161690864 ATATCTACACTTGGATCGAGGAC 59 161690901 161692275 TGTGACGAATAGAGTTCTTCCA 59 NA Rattus norvegicus 81 Foxm1 ENSRNOG00000005936 ENSRNOT00000008003 3 1 2 82 4 161690878 161690896 TTAAGCACATTGCCAAGCC 59 161691677 161692277 GTTGTGACGAATAGAGTTCTGTG 60 NA Rattus norvegicus 81 Map2 ENSRNOG00000011841 ENSRNOT00000037974 1 1 3 80 9 73418547 73418567 GAAACAGTTAATCTGCCACCT 59 73418609 73437253 ACCACTTGTTGCTTCTTCC 58 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000088246,ENSRNOT00000084682,ENSRNOT00000083412,ENSRNOT00000019265 2 5 9 80 9 81533018 81535392 CCCAGAATCAGGATACAATGTG 59 81535431 81535451 GCCTGATGCACAATAGAATCC 60 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000088246,ENSRNOT00000084682,ENSRNOT00000019265 3 4 9 161 9 81518590 81527536 CGGAAACAAACCAGAAGCT 59 81529665 81532993 CTCTTTAGTAACTCATCAGCTCC 59 NA Rattus norvegicus 81 Srd5a3 ENSRNOG00000002216 ENSRNOT00000090595 3 1 3 81 14 34561648 34562172 GGATACAAGGCAAGAAGCTG 59 34561586 34561604 TCGAAGAGTCTCCGAAGAC 59 NA Rattus norvegicus 81 Pde1c ENSRNOG00000012337 ENSRNOT00000017531 1 1 2 80 4 86375700 86375718 CCAAGAAGCGTTCTCATGG 59 86360513 86375656 AAGGAGGCTTGATGACTGG 59 NA Rattus norvegicus 81 Slc24a4 ENSRNOG00000006729 ENSRNOT00000088089 2 1 3 89 6 126110299 126110318 CGTGACTCTGTGTACTACAC 58 126114001 126116798 CTGCATCTTCATATTGTACCAC 57 NA Rattus norvegicus 81 Slc24a4 ENSRNOG00000006729 ENSRNOT00000089840,ENSRNOT00000008886 3 2 3 80 6 126103287 126103306 TTCCCTACAGACCTGTTCTC 59 126103346 126105889 GAACATATAGAGTGCACCAAGG 59 NA Rattus norvegicus 81 LOC689757 ENSRNOG00000037076 ENSRNOT00000042872,ENSRNOT00000045501 3 2 2 85 4 162185000 162189812 AATTCCTCACAGTAAAGTGCG 59 162184935 162184953 CTCCATAGCAGCAGTAACG 58 NA Rattus norvegicus 81 LOC689757 ENSRNOG00000037076 ENSRNOT00000042872,ENSRNOT00000045501 3 2 2 85 4 162185000 162228924 AATTCCTCACAGTAAAGTGCG 59 162184935 162184953 CTCCATAGCAGCAGTAACG 58 NA Rattus norvegicus 81 Acap2 ENSRNOG00000001730 ENSRNOT00000080834 2 1 2 80 11 73178005 73178024 GATCATCTCCAAGAGCTGTG 58 73178066 73178484 CTATTTACAGCAGCCACTGG 59 NA Rattus norvegicus 81 Rfng ENSRNOG00000050298 ENSRNOT00000075041 1 1 2 136 10 109964974 109964992 GAGAACTTGCAGAAGCTGC 60 109964467 109964572 GACTGAAACCGTGTAGGGT 59 NA Rattus norvegicus 81 Mynn ENSRNOG00000027923 ENSRNOT00000078148 3 1 2 87 2 116402788 116402811 CCATACATATGTGGTATTTGTGGG 60 116401757 116402743 ATGGTCGTTCTCCTGTATGG 59 NA Rattus norvegicus 81 Kcnip1 ENSRNOG00000005365 ENSRNOT00000040737,ENSRNOT00000079031,ENSRNOT00000083090,ENSRNOT00000007187 3 4 4 80 10 18562620 18570962 CATAAACAAAGAGGAGATGATGGAC 60 18562564 18562584 TCTTTGAGCACAGGATAGGTG 60 NA Rattus norvegicus 81 Tulp3 ENSRNOG00000005767 ENSRNOT00000067895 3 1 2 174 4 161652910 161652928 AAGCAAGCCTCAAGTTCTC 58 161652752 161652772 TGAGAGTAAGGAGGACCCA 59 NA Rattus norvegicus 81 Col17a1 ENSRNOG00000012110 ENSRNOT00000084851 3 1 2 85 1 267437789 267438612 GACCTAAAGGAGACCGTGG 60 267437616 267437634 TTGTCCCTTTGGTCCTTCC 60 NA Rattus norvegicus 81 Cacul1 ENSRNOG00000009954 ENSRNOT00000084760 2 1 2 80 1 281828655 281828675 GTCAACACCATTTCAGGTCAC 60 281825477 281828614 TGAACCCATTCTGGTCTGAG 60 NA Rattus norvegicus 81 Lsg1 ENSRNOG00000001727 ENSRNOT00000081081,ENSRNOT00000002354,ENSRNOT00000090940 3 3 3 120 11 73697839 73697860 ACAGTTCCTGTGTATACCAAGG 60 73698331 73704380 TTCTTCTAGCCGGACAAGC 60 NA Rattus norvegicus 81 Lilrb3l ENSRNOG00000053260 ENSRNOT00000080799,ENSRNOT00000080820 2 2 4 82 1 63759680 63842605 CTGTCTTGGACTGACTCTGG 60 63842828 63842846 AATCTGGCTGTGCTCTGAG 60 NA Rattus norvegicus 81 Itpk1 ENSRNOG00000008051 ENSRNOT00000080829 1 1 2 98 6 126460615 126461725 GATGCCAGATCGTGAATCC 59 126455315 126455334 AATACGCCCTCAATCTTGTC 58 NA Rattus norvegicus 81 Sphk1 ENSRNOG00000010626 ENSRNOT00000032163,ENSRNOT00000088457,ENSRNOT00000079080,ENSRNOT00000083593 3 4 4 96 10 105503087 105503354 GAACTACTATGCTGGGCAC 58 105503414 105503432 CAGATTCATGGGTGACAGC 59 NA Rattus norvegicus 81 Sphk1 ENSRNOG00000010626 ENSRNOT00000032163,ENSRNOT00000088457,ENSRNOT00000079080,ENSRNOT00000083593 2 4 4 95 10 105503087 105503354 GAACTACTATGCTGGGCAC 58 105503413 105503431 AGATTCATGGGTGACAGCT 59 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000020656 ENSRNOT00000091573 3 1 3 92 8 117769893 117769911 GAAATCCAGGACCACTACC 57 117769967 117773137 ACTCCACTTTACAACCTCG 57 NA Rattus norvegicus 81 Sorbs1 ENSRNOG00000015658 ENSRNOT00000021289 3 1 5 80 1 259425090 259429374 TTTGGGAGACCGACTAACC 59 259425028 259425050 CGTCTCCACTTTCTCTAAATCTG 59 NA Rattus norvegicus 81 Sorbs1 ENSRNOG00000015658 ENSRNOT00000021114 2 1 5 80 1 259446806 259448458 CTGAACAGAGACACTCCTG 57 259446744 259446763 AGAGTTCTGCTGGATTTCAG 58 NA Rattus norvegicus 81 Atp2b4 ENSRNOG00000003031 ENSRNOT00000046273 3 1 2 87 13 50145518 50145537 TATTCAGAAGCAGTTGCGTC 59 50145587 50149551 TTTGACCACTCTGATTGCC 58 NA Rattus norvegicus 81 Tmed4 ENSRNOG00000005016 ENSRNOT00000006802 3 1 2 83 14 86394989 86395007 CTATTTCCACATCGGCGAG 59 86394749 86394943 GTTCGATAGTTGCCGATGAC 59 NA Rattus norvegicus 81 Sgms1 ENSRNOG00000012536 ENSRNOT00000087588,ENSRNOT00000079227,ENSRNOT00000054761,ENSRNOT00000079942 2 4 4 81 1 250692825 250693532 CAATCAGCAAGTGCTGAAGG 60 250692763 250692784 TTCAAAGTACTGAAATGGCCTG 59 NA Rattus norvegicus 81 Rasa4 ENSRNOG00000001431 ENSRNOT00000001943,ENSRNOT00000064405 1 2 2 80 12 23604898 23605367 AAAGGAAGAGCTGGACCTG 59 23604836 23604857 GTTCTGTGGATAAACAGTGGTC 59 NA Rattus norvegicus 81 Tmem183a ENSRNOG00000003594 ENSRNOT00000078990,ENSRNOT00000005272 2 2 2 80 13 51194015 51199862 GAGACACAAAGAAGACCTGGA 60 51193955 51193973 CGGATATAGGAAGCCAGCA 59 NA Rattus norvegicus 81 Ttc25 ENSRNOG00000017473 ENSRNOT00000080231,ENSRNOT00000067559 3 2 2 82 10 88466148 88468271 TGGATGAAGATCTCATCAAAGG 58 88468313 88468332 GTCCAGGTAGTTGATTCCAG 58 NA Rattus norvegicus 81 Supv3l1 ENSRNOG00000000392 ENSRNOT00000000441,ENSRNOT00000080773 2 2 2 80 20 32057974 32058875 TACCTGTGGCTAAGCTACC 59 32057912 32057932 GACATCCAGTTCTTTCTGGAG 59 NA Rattus norvegicus 81 Calu ENSRNOG00000006197 ENSRNOT00000008356 1 1 3 85 4 56633087 56633105 CATGATGCCTTCTTGGGAG 58 56633152 56638216 ACAATCTTTCCAAGCCTTTCC 59 NA Rattus norvegicus 81 Calu ENSRNOG00000006197 ENSRNOT00000090808,ENSRNOT00000008972 1 2 3 80 4 56638595 56638616 GTTTGATATGAATCAAGACGGC 58 56638655 56642823 TCTGGATCATCCAGGTAAGTG 59 NA Rattus norvegicus 81 Agxt ENSRNOG00000023856 ENSRNOT00000029127,ENSRNOT00000079305 3 2 2 107 9 100290536 100290944 TCTGAGGATAAGGTGCTGC 59 100291014 100291033 CTTAGGACAATGTTGCAGGG 59 NA Rattus norvegicus 81 Endov ENSRNOG00000003699 ENSRNOT00000004966 2 1 2 90 10 108630897 108639108 TGGAAAGGGTGCTGTATGAG 60 108639161 108639179 AGGAAAGGTACCTCTCGGA 59 NA InUTR Rattus norvegicus 81 Mybph ENSRNOG00000003336 ENSRNOT00000046854 2 1 3 102 13 51034668 51034686 ACAGCTCCTTGACTGTGAG 59 51034753 51035431 CATTCTGAGGCTACCTCCC 59 NA Rattus norvegicus 81 Gtf2i ENSRNOG00000001479 ENSRNOT00000002020 3 1 3 93 12 25447471 25452061 AACATTCAAGGAAGCCATCAC 59 25453985 25454005 TTTCTGAAGGGACATGTTGAG 58 NA Rattus norvegicus 81 Alg13 ENSRNOG00000005753 ENSRNOT00000076521,ENSRNOT00000087859 1 2 4 80 X 115565309 115582386 TTCTATTGTACTTGCAGGGTC 58 115582428 115582446 CAGAATCTTGGCACTTCCC 59 NA Rattus norvegicus 81 Cyfip1 ENSRNOG00000011945 ENSRNOT00000088459 1 1 2 81 1 114318333 114318351 GAAAGGCTCTTGCATGTGG 60 114318396 114320293 GCAGTGTTTCACCAAAGGT 59 NA Rattus norvegicus 81 LOC100909688 ENSRNOG00000049662 ENSRNOT00000075247,ENSRNOT00000075062 3 2 2 61 2 86474342 86474362 GTTGGAGAATTACAGCAACCT 59 86471481 86471502 CACATTCTTTACATTTGTGGGC 59 NA DesignNoJunction Rattus norvegicus 81 Dennd6b ENSRNOG00000029866 ENSRNOT00000051347 1 1 2 87 7 130171091 130176453 CGCTAGAGCTAGTCTATCCG 59 130170945 130170963 GAGTGGGAGTCTGGAAAGG 59 NA Rattus norvegicus 81 Ccna2 ENSRNOG00000015423 ENSRNOT00000079745 1 1 2 121 2 123279038 123280054 ACCAGAGATGTTGAATCACC 58 123278936 123278955 ATTTCCCTAAGGTACGTGTG 57 NA Rattus norvegicus 81 Htr6 ENSRNOG00000049761 ENSRNOT00000070865,ENSRNOT00000078028 1 2 2 65 5 157503970 157503988 TTTGTGGCCAACATAGCTC 59 157503729 157503747 TGTGAGGACATCGAAGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Nrip2 ENSRNOG00000042939 ENSRNOT00000055886 2 1 2 82 4 161728492 161728981 TGCTTTCCCTCAAGGTAGG 59 161729026 161729045 CACAGTACTCTCGGTAGGAG 59 NA Rattus norvegicus 81 Slc6a15 ENSRNOG00000027468 ENSRNOT00000029208,ENSRNOT00000090641 2 2 2 80 7 45372137 45372157 ACATTGCCTCTGTTAATCGTG 59 45372193 45379108 GTCTTCTAGAAACTTATCTATGCCG 59 NA Rattus norvegicus 81 Slc1a7 ENSRNOG00000011644 ENSRNOT00000072263 2 1 4 80 5 127579910 127579928 CCAGTTCCCTGGAGAACTC 59 127579972 127605499 GCTGGAAACATGTTCCTGG 59 NA Rattus norvegicus 81 Tsc2 ENSRNOG00000011375 ENSRNOT00000016221 2 1 2 80 10 13967965 13967984 TACAAGTCATTGTCAGTGCC 58 13967287 13967922 GGAGAAAGAAGCCACTGTG 59 NA Rattus norvegicus 81 Tex37 ENSRNOG00000006476 ENSRNOT00000008473 2 1 1 60 4 98731702 98731722 AAATACTCCAGAGTCACACCA 59 98728686 98728704 CTTTGCTTTGGAGCTGAGC 60 NA DesignNoJunction Rattus norvegicus 81 Tle4 ENSRNOG00000013239 ENSRNOT00000018452,ENSRNOT00000018272 3 2 3 82 1 231398259 231398277 TGTAAGCACTGGAAAGGAC 57 231396277 231398214 ATGAGGATTCTTTGGACTGG 57 NA Rattus norvegicus 81 Ryr3 ENSRNOG00000006645 ENSRNOT00000040306 2 1 2 186 3 104168262 104176576 AAATCTGGAGGACAGGACC 59 104167798 104168113 CATCAGTGTCTCTACAGCTG 58 NA Rattus norvegicus 81 Taf9b ENSRNOG00000061102 ENSRNOT00000090833,ENSRNOT00000091234,ENSRNOT00000089640 2 3 3 80 X 77284303 77290477 ACTACTCCTACTGTAGCACC 58 77284242 77284260 TCTTTGGCTTGTCACTGAC 58 NA Rattus norvegicus 81 Taf9b ENSRNOG00000061102 ENSRNOT00000090833,ENSRNOT00000091234,ENSRNOT00000089640 3 3 3 80 X 77284302 77290476 CTACTCCTACTGTAGCACCC 59 77284241 77284260 ATCTTTGGCTTGTCACTGAC 59 NA Rattus norvegicus 81 Prss44 ENSRNOG00000030073 ENSRNOT00000051947,ENSRNOT00000048655 2 2 2 80 8 119085453 119085472 GTCTTTCTTGGTACAACCGG 59 119085514 119086673 ACCCTTGATGATCTACCTCG 59 NA Rattus norvegicus 81 Tgds ENSRNOG00000009661 ENSRNOT00000067309,ENSRNOT00000088909 1 2 2 88 15 103327085 103329323 CTTGATCAGGAGTTTGACGAG 59 103327017 103327035 GACTGCACAAAGCACTCAG 60 NA Rattus norvegicus 81 Rims2 ENSRNOG00000004201 ENSRNOT00000043079 1 1 4 80 7 78462384 78482265 CGAAGAAATATCGCTCAGGA 58 78482307 78482326 CACTTACATCACTGTCCGAG 58 NA Rattus norvegicus 81 Rims2 ENSRNOG00000004201 ENSRNOT00000039984 1 1 4 80 7 78512216 78512234 CTTGTGCAGGAATGTGGAG 59 78512274 78520245 GGACGTAAAGACATTGATGTCAG 60 NA Rattus norvegicus 81 Eng ENSRNOG00000050190 ENSRNOT00000074562,ENSRNOT00000071801 3 2 2 80 3 11708863 11708881 CATGTCCCTGATTCAGCCA 60 11708925 11712686 CACTGTAGAGTCTGCACGA 59 NA Rattus norvegicus 81 Ctage5 ENSRNOG00000005101 ENSRNOT00000006995,ENSRNOT00000086221 2 2 5 80 6 80235408 80235431 CTTAGAGTCATCTTTAAAGGAGGC 59 80235468 80237052 TGTGATCCTTCAACAAACTCC 59 NA Rattus norvegicus 81 Limk1 ENSRNOG00000001470 ENSRNOT00000001996,ENSRNOT00000084427 2 2 2 80 12 25068420 25068954 TTGTCCTTTGTGAGATTATCGG 59 25068994 25069013 TTACATTGAGGCCAAAGTCC 58 NA Rattus norvegicus 81 Scp2 ENSRNOG00000011413 ENSRNOT00000015466 3 1 3 80 5 127625990 127626810 ACAACAAGCTGACATTGGC 59 127625928 127625949 TCTTAGTGAGATAATTGGCAGC 58 NA Rattus norvegicus 81 Rwdd4 ENSRNOG00000022500 ENSRNOT00000035323 3 1 2 98 16 47864673 47864691 TTTCCAAAGCTCAGAAGCG 59 47858664 47861255 TGCTTAAATGCTTCACGACG 60 NA Rattus norvegicus 81 Ppfibp1 ENSRNOG00000031709 ENSRNOT00000083633 3 1 2 80 4 181426162 181426180 GGAAGATTCAGAAGGGACG 58 181426223 181426443 TCTTCCTTTAACATGTGCGT 58 NA Rattus norvegicus 81 AABR07068455.1 ENSRNOG00000046623 ENSRNOT00000046409 2 1 2 109 9 105944571 105944590 GTTATAAGGTGCTCAACCGT 58 105945337 105946148 GATGCTGAACTCATTGTTCAG 58 NA Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000004295 2 1 6 80 10 53743005 53743140 TGGATGATCTACACCTACTCG 59 53743180 53743200 CACCTCTGCATTATACACTGG 59 NA Rattus norvegicus 81 Aldh1l1 ENSRNOG00000047023 ENSRNOT00000085966 1 1 2 80 4 123542967 123542987 TACAATACCATCAACCCAACG 59 123541951 123542684 CACTGCCATTGTCAATTGAG 58 NA Rattus norvegicus 81 Dnajc15 ENSRNOG00000009063 ENSRNOT00000012530 1 1 2 120 15 60014595 60014613 AATGAGTAGGCGAGAAGCC 60 59990365 60011006 AGGAGATCCACCTTTGTCG 59 NA Rattus norvegicus 81 Dnajc15 ENSRNOG00000009063 ENSRNOT00000012530 2 1 2 121 15 60014595 60014613 AATGAGTAGGCGAGAAGCC 60 59990364 60011006 AAGGAGATCCACCTTTGTCG 60 NA Rattus norvegicus 81 Sema5a ENSRNOG00000011977 ENSRNOT00000085094 2 1 2 160 2 85753555 85753808 GTTCCATCCTGCATTATACTGC 60 85753929 85753947 CATTGCATCCTGCACAGTC 60 NA Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000087278 3 1 5 83 8 6152358 6152376 AGCAGGAGTTATTTCGGCA 59 6140364 6150136 TGCGGAGAGCTAATTCCTG 60 NA Rattus norvegicus 81 Fpgt ENSRNOG00000009548 ENSRNOT00000077839 2 1 3 81 2 261399424 261399443 TTCAGTGCCTAGAAAGCCTC 60 261384701 261399380 TTCAGATTCCATGAGCCGG 60 NA Rattus norvegicus 81 Slco6c1 ENSRNOG00000013792 ENSRNOT00000077596,ENSRNOT00000077480,ENSRNOT00000018503,ENSRNOT00000081815 3 4 4 81 9 104698717 104718644 CGGTCTTAATTCATGGTGCT 58 104698655 104698678 CTCTTTGACAGAGTAAGTAGACTG 59 NA Rattus norvegicus 81 Ddx50 ENSRNOG00000000396 ENSRNOT00000000446,ENSRNOT00000082114 2 2 2 80 20 32247686 32253324 ACACATAAAGCAGAACGCAC 60 32247625 32247644 TCTCTGAAGCCTTTCAAGGT 59 NA Rattus norvegicus 81 Olr1522 ENSRNOG00000030148 ENSRNOT00000050349 3 1 1 84 10 75201616 75201635 TGTCTCCATCATGAACACCC 60 75191129 75191147 CAGCTGGACAATGGAATGC 60 NA DesignNoJunction Rattus norvegicus 81 Stox1 ENSRNOG00000023712 ENSRNOT00000080727,ENSRNOT00000035355 1 2 2 81 20 32296563 32296581 TATGAACGCAGGTCAGGTG 60 32294811 32296518 GGGAACAGCAATACCTGGA 59 NA Rattus norvegicus 81 Orc5 ENSRNOG00000011519 ENSRNOT00000090600 3 1 2 82 4 9203446 9203466 ATTCTGAGAACAGAACAGCAC 59 9203506 9215579 GGAGGTAATCTTTAAACTGACCC 59 NA Rattus norvegicus 81 Clta ENSRNOG00000014635 ENSRNOT00000083068 1 1 3 97 5 59502242 59502260 ACGAGCAGCTACAGAAGAC 60 59506527 59508707 TTCTGCTGCCACATAACCA 60 NA Rattus norvegicus 81 Calca ENSRNOG00000011130 ENSRNOT00000055124,ENSRNOT00000014948 3 2 2 91 1 184187168 184187770 CCTTTGAGGTCAACCTTGG 58 184187095 184187114 ATATAGTTCTGCACCAGTGC 58 NA Rattus norvegicus 81 Klhdc10 ENSRNOG00000010267 ENSRNOT00000079059,ENSRNOT00000034429 2 2 2 80 4 57760338 57762692 GATATACGGACAGGCAATGG 58 57762732 57762753 TCTGTGCTATAGATGTAGCCAG 59 NA Rattus norvegicus 81 Arhgap28 ENSRNOG00000017065 ENSRNOT00000067900,ENSRNOT00000090111 3 2 2 80 9 116094552 116094573 ATAGTACTACCCTATCCAACGG 58 116089432 116094512 CAAGTATTGACACGGAACCA 58 NA Rattus norvegicus 81 RGD1308751 ENSRNOG00000039954 ENSRNOT00000083451,ENSRNOT00000090013,ENSRNOT00000061391 3 3 4 80 17 4256823 4270833 GCCTTTGGTGATTTGACCA 59 4270877 4270895 GATGGTTGTCTCCTTGGGT 59 NA Rattus norvegicus 81 Cpne2 ENSRNOG00000043286 ENSRNOT00000088196,ENSRNOT00000063791 1 2 2 80 19 10879352 10880943 CTTAATCACGATCGCAGCC 59 10879290 10879308 TTCTTATCCAGCTTCCGGC 60 NA Rattus norvegicus 81 Col6a3 ENSRNOG00000019648 ENSRNOT00000077924,ENSRNOT00000081301,ENSRNOT00000026707 3 3 5 81 9 97975855 97989220 ACAACAATCAGTCATGGAAGTC 59 97975795 97975813 GAAGTTAGCCTGTCCCAGG 60 NA Rattus norvegicus 81 Rab3ip ENSRNOG00000005362 ENSRNOT00000007258 3 1 2 81 7 59928765 59930705 AAACAGCAGGATGTTGATCAG 59 59928704 59928723 TGAAATATCCCAGCTTTGCC 59 NA Rattus norvegicus 81 Atp5g2 ENSRNOG00000015320 ENSRNOT00000090051,ENSRNOT00000020676 2 2 2 60 7 144266501 144266519 TGGGAGTCTCATCATTGGC 60 144264438 144264457 ATAGGAGAAGAGTTGCTGCT 59 NA DesignNoJunction Rattus norvegicus 81 Atp5g2 ENSRNOG00000015320 ENSRNOT00000090051,ENSRNOT00000020676 3 2 2 60 7 144266496 144266516 GAGTCTCATCATTGGCTATGC 59 144264435 144264453 CGCATAGGAGAAGAGTTGC 58 NA DesignNoJunction Rattus norvegicus 81 Mpp5 ENSRNOG00000008788 ENSRNOT00000012005,ENSRNOT00000092157 3 2 2 80 6 101987222 101995073 TGTACAAGAGGTACAAACTGTC 58 101995113 101995132 TGTGGAGCATTTAACAAAGC 57 NA Rattus norvegicus 81 Mark4 ENSRNOG00000017069 ENSRNOT00000084882 2 1 2 138 1 80339419 80339570 GAAGGGTTACCCTCGATCC 59 80336778 80338367 TAGATGGCAACTTGTGACCT 59 NA Rattus norvegicus 81 Dffa ENSRNOG00000013603 ENSRNOT00000089179,ENSRNOT00000059522 2 2 2 84 5 165924829 165924847 TTCCTCTGTCTCCCTTCCA 60 165924895 165926044 CTGTTCCTCCATCCGAGTC 60 NA Rattus norvegicus 81 Tma16 ENSRNOG00000014188 ENSRNOT00000019363,ENSRNOT00000082142 1 2 2 126 16 24978574 24980917 GCCTAAAGGACTGAAAGCA 58 24981006 24982624 CTCCGTCTTCAATCTTTCCT 57 NA Rattus norvegicus 81 Myo5a ENSRNOG00000058866 ENSRNOT00000091789 1 1 3 80 8 82124453 82124474 AGGAATTATATGCAGATGACCC 58 82124512 82125910 GTTCCATCAGATCAATCATCCT 58 NA Rattus norvegicus 81 Rfc1 ENSRNOG00000002855 ENSRNOT00000003907 1 1 2 80 14 44689031 44690079 CGAGTTGAACAGATTAAGAGTG 57 44690119 44690138 TTCATTCATAGCTGGAGGTG 57 NA Rattus norvegicus 81 Tp63 ENSRNOG00000001924 ENSRNOT00000068116,ENSRNOT00000002636 3 2 5 83 11 78309229 78341324 AGACTCAATTTAGTGAGCCAC 58 78309166 78309184 TAGATGAGGAGCCGTTCTG 59 NA Rattus norvegicus 81 Fhod3 ENSRNOG00000027230 ENSRNOT00000068139 3 1 2 80 18 17324793 17326200 GATGACACTGAGTCTGGCA 59 17326243 17326262 ATCCTCAGCATAGCTCAGAC 59 NA Rattus norvegicus 81 LOC679739 ENSRNOG00000049394 ENSRNOT00000075959 1 1 3 147 1 32573328 32573346 GAGAAGATCACGCATACCG 58 32574330 32576093 CGACAAATACTCTTTCTGACGA 59 NA InUTR Rattus norvegicus 81 Kif21b ENSRNOG00000008471 ENSRNOT00000090599 2 1 2 84 13 53021767 53021785 TGAGATCAAGGGCCATGAC 60 53021833 53022863 CACTGTCAGGTCACTGGAG 60 NA Rattus norvegicus 81 Dysf ENSRNOG00000032788 ENSRNOT00000085765,ENSRNOT00000064536 3 2 2 80 4 115879227 115879247 GGGAAGAAATCAGTGAGTGAC 59 115879286 115880729 GGTGAGTTCAAACATCTTTCCA 59 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000047964 2 1 8 80 1 226468243 226480826 CTCAACTTGTCCAAGTTGCC 60 226480869 226480887 AGACTCATCATGTGGCGTC 60 NA Rattus norvegicus 81 Slit2 ENSRNOG00000003840 ENSRNOT00000081601 1 1 2 81 14 66925896 66926776 GTTGTTCAGCTAAAGAGCAG 57 66922464 66922482 AAGTCTGCAAAGCAGTCTC 58 NA Rattus norvegicus 81 Lims2 ENSRNOG00000016021 ENSRNOT00000061054 2 1 2 106 18 24743886 24744529 CACTACAACCAGCTCTTTGG 59 24744598 24744616 TTGGGAGAAAGCAAGGGAG 60 NA Rattus norvegicus 81 Timm9 ENSRNOG00000008222 ENSRNOT00000010871,ENSRNOT00000088790 2 2 2 83 6 93549993 93551766 TGAAACCTGAAGAGGTTACCT 59 93549930 93549954 CCTGAAATCTCATGGATATTCTCTG 59 NA Rattus norvegicus 81 Prkab2 ENSRNOG00000018166 ENSRNOT00000086588 2 1 2 84 2 199840502 199841153 GGACACTAATATTTCATGTGACCC 60 199841194 199841214 CTTAATGGACAGCGCATAGAG 59 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000082775,ENSRNOT00000087711,ENSRNOT00000068238,ENSRNOT00000064344,ENSRNOT00000044638,ENSRNOT00000007218 1 6 7 80 3 48276243 48276264 GAACAAAGTATGCTAGCCATGG 60 48276305 48279006 CACAGATGGGTCGTCTCTG 60 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000082775,ENSRNOT00000087711,ENSRNOT00000068238,ENSRNOT00000064344,ENSRNOT00000044638,ENSRNOT00000007218 3 6 7 86 3 48276297 48278998 GGACACTACAGAGACGACC 59 48279047 48279066 AGCAGTGACTAGAAGGTTCC 59 NA Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000088168 1 1 6 80 1 41554562 41561428 TTCTCGGAAAGGAATCAAGG 58 41561471 41561489 GAATCGACTTGACGTAGCC 58 NA Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000088168 2 1 6 80 1 41554560 41561428 ATTTCTCGGAAAGGAATCAAGG 59 41561469 41561487 ATCGACTTGACGTAGCCAG 60 NA Rattus norvegicus 81 LOC100911154 ENSRNOG00000042884 ENSRNOT00000056172 1 1 3 88 2 200713564 200713662 ACTACATCTCAGATGACACCC 59 200713496 200713514 ACTGGAATCAAGGTGGAGG 59 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000064785,ENSRNOT00000029878,ENSRNOT00000029865,ENSRNOT00000060292,ENSRNOT00000000814 2 5 5 80 13 55080674 55085391 CTACATTGATGGCTTCAAGGA 58 55080406 55080426 TTCCAGAAGTCATCAACTGTC 58 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000029865 2 1 5 81 13 55114472 55120562 TATCTTCCAGGTGCCAACC 59 55114409 55114429 CTATTTCTGTGCTTGTGGTGG 60 NA Rattus norvegicus 81 Itgam ENSRNOG00000019728 ENSRNOT00000026748 1 1 3 80 1 199541086 199541104 ATGGGACCAAGGTTACCTG 59 199541147 199541252 TCTTGGAGAACTGGTTCTGG 59 NA Rattus norvegicus 81 Eif2b1 ENSRNOG00000001039 ENSRNOT00000001373 1 1 2 96 12 37451364 37451383 AACAAGCCCTTCTATGTGGT 59 37451436 37451723 CTGCCTTGTACTTAAACTTATCTGG 60 NA Rattus norvegicus 81 Dact3 ENSRNOG00000052256 ENSRNOT00000084601 2 1 1 144 1 78808853 78808871 GATCTGGCTCCTATGGACG 59 78810333 78810351 GGAGCTGAGAAGGATCGAG 59 NA DesignNoJunction Rattus norvegicus 81 Ap2b1 ENSRNOG00000061543 ENSRNOT00000090446,ENSRNOT00000088198 1 2 3 150 10 70566473 70566491 AAATCTTGACCTGGGTCCC 59 70579746 70580554 GAAGGACTGTCCTACTGCC 60 NA Rattus norvegicus 81 Max ENSRNOG00000008049 ENSRNOT00000010954,ENSRNOT00000083286,ENSRNOT00000041442 3 3 3 60 6 100011200 100011219 ATAACGATGACATCGAGGTG 58 100002741 100002759 TCCAGTGCATTATGGTGAG 57 NA DesignNoJunction Rattus norvegicus 81 Ehmt2 ENSRNOG00000030630 ENSRNOT00000081456,ENSRNOT00000085701,ENSRNOT00000090125,ENSRNOT00000047370 1 4 4 80 20 4583703 4583721 GGAAGAGGAGGAAGAGGAG 58 4583765 4583867 CTAGAGCCACTCCTGTCTG 59 NA Rattus norvegicus 81 Traf3 ENSRNOG00000008145 ENSRNOT00000077770 2 1 2 80 6 135680861 135680879 GTCTGACATGCTTCAGAGC 59 135680920 135690466 TTAGGGAGGAGAAATTCTGAGG 59 NA Rattus norvegicus 81 Ly49s6 ENSRNOG00000053337 ENSRNOT00000077539 3 1 3 82 4 164439014 164439039 CTTCAGGACCACATTATTGACAG 60 164438953 164438972 GTGTTGTCAATCCATGACCA 59 NA Rattus norvegicus 81 Ptk2 ENSRNOG00000007916 ENSRNOT00000079599 3 1 2 81 7 114573923 114589820 GTTGGGCTAAAGAATATGACAG 57 114573863 114573882 GTGTGATTCAAGTTTGGGTC 57 NA Rattus norvegicus 81 Sptan1 ENSRNOG00000015396 ENSRNOT00000091697 1 1 5 97 3 8594948 8594966 AGAATGACAAGCTACGCCA 59 8595377 8596386 ATATGCTATGCCGTCGAGG 60 NA Rattus norvegicus 81 Guca1b ENSRNOG00000015623 ENSRNOT00000077318 1 1 2 80 9 15626013 15626033 TTCAAGATCTACGACAAGGAC 58 15625118 15625973 AATTGTTCTACTGACCTCCAC 58 NA Rattus norvegicus 81 Ercc6 ENSRNOG00000030017 ENSRNOT00000064255 1 1 2 80 16 8760627 8772196 GCTCTTTAAGTTCGAGGGAC 58 8772238 8772257 TGGAATTCTTTCACCCACTG 58 NA Rattus norvegicus 81 Cyp4a1 ENSRNOG00000009597 ENSRNOT00000012888 2 1 3 82 5 134492915 134492933 AGGCAATGGCTACTCAAGG 60 134492978 134494132 TCACCTTGAAACTGCTTGTG 59 NA Rattus norvegicus 81 Spata5 ENSRNOG00000017462 ENSRNOT00000023584 1 1 2 80 2 124205976 124340800 TAGACAAGATCATAGCAGTCTG 57 124340840 124340859 TCTTCATAATGCAGTCAGCT 57 NA Rattus norvegicus 81 Mea1 ENSRNOG00000017144 ENSRNOT00000023495,ENSRNOT00000089168 3 2 2 99 9 16610695 16611161 CATGGACCCAGAACATGTG 59 16610614 16610633 AGCATCTGATATCTCCCGAG 59 NA Rattus norvegicus 81 Spidr ENSRNOG00000037851 ENSRNOT00000057502 2 1 2 88 11 89254503 89254523 GACAGTGAAAGCAACTGACTC 60 89253810 89254453 TTGCTAATGGCAGGGTCTC 60 NA Rattus norvegicus 81 Ankib1 ENSRNOG00000005502 ENSRNOT00000007940 3 1 3 81 4 27585341 27592363 GCATCACCTGAGTATCGGA 59 27592408 27592426 GGTCCGTAGGGTTACTGAG 59 NA Rattus norvegicus 81 Mov10l1 ENSRNOG00000031093 ENSRNOT00000042686 1 1 2 80 7 130014667 130014685 CAAAGGAAAGGCACCTGAG 59 130014723 130016593 GGATCTGAATTTCATCCATAGTCTC 59 NA Rattus norvegicus 81 Csnk1e ENSRNOG00000013076 ENSRNOT00000088424,ENSRNOT00000018126,ENSRNOT00000087800 1 3 3 87 7 120659554 120659572 AGAAGTACGAGCGGATCAG 59 120659003 120659506 AGGTAAGTTGAGAACTCAGAGG 59 NA Rattus norvegicus 81 Chd1 ENSRNOG00000014434 ENSRNOT00000019358 2 1 2 80 1 57753901 57753921 CTACTCCTCATTTAGCAACGG 59 57753958 57755157 TCTCTGTCACTATAGTACCTACTG 58 NA Rattus norvegicus 81 Tepp ENSRNOG00000013465 ENSRNOT00000082822,ENSRNOT00000018082 2 2 2 106 19 10131817 10211830 CACCAAAGATGATTTCAACGAG 58 10131506 10131524 ACTTGTGACAGAGCTTCTG 57 NA Rattus norvegicus 81 Gprc5c ENSRNOG00000003144 ENSRNOT00000004256,ENSRNOT00000086924 1 2 2 60 10 103409100 103409119 TATGGATGAACCAGCCTCAG 59 103411696 103411714 CTGACCATTGTAGCCACTG 58 NA DesignNoJunction Rattus norvegicus 81 Mast2 ENSRNOG00000058476 ENSRNOT00000085235 3 1 2 87 5 135257450 135257469 AATCTCTTGGACAGTCTGCA 59 135197073 135234802 TTACTCGTCCGACAGAAGC 60 NA Rattus norvegicus 81 Ccdc7 ENSRNOG00000050191 ENSRNOT00000073524 2 1 3 80 19 62066517 62066537 TCCAAATGGAGAACTTCACTC 58 62064493 62064533 GAGTTCAGTTGTTCTTTCAGG 57 NA Rattus norvegicus 81 Cetn3 ENSRNOG00000048563 ENSRNOT00000089209 2 1 2 80 2 12111952 12111971 GAATATGAGCGATGAGGAGC 58 12112013 12112800 GGCAGTGTAGCTTCATTCTC 59 NA Rattus norvegicus 81 Mknk1 ENSRNOG00000010381 ENSRNOT00000091543,ENSRNOT00000067655 3 2 2 80 5 134718652 134718671 ACTTCAATGAGCTAGAAGCC 58 134718713 134722176 GAGCAATGCCTTTAGTATGC 57 NA Rattus norvegicus 81 Cald1 ENSRNOG00000010233 ENSRNOT00000086377,ENSRNOT00000041264 1 2 2 80 4 62270224 62270242 GTTCTGGAGGAAGAGGAGC 60 62270284 62272463 CAACCTCCTCTTCTCTTCCTC 60 NA Rattus norvegicus 81 Cald1 ENSRNOG00000010233 ENSRNOT00000086377 2 1 2 80 4 62260110 62260128 GGAGTTAAAGGGCAAGCTC 59 62260168 62265589 CTTCTCATCTTTGATCTCTTCCC 59 NA Rattus norvegicus 81 Prkar2b ENSRNOG00000009079 ENSRNOT00000012415 3 1 3 101 6 51356150 51356169 CAGTAAGGGTGTCAACTTCG 59 51333962 51356086 ATAACTGGAGCGTTGAACG 58 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000078507,ENSRNOT00000080590,ENSRNOT00000060327 3 3 7 93 20 4095963 4095981 AGAAGATGAGTGGAGTCGG 59 4096038 4096452 CCAGACTGTCCTTTCTGGT 59 NA Rattus norvegicus 81 Bin1 ENSRNOG00000012852 ENSRNOT00000017573 1 1 3 84 18 25199538 25200167 AAATTGCCAAGCCTGTCTC 59 25200215 25200233 TGAGCTACAAGATGAGCCT 58 NA Rattus norvegicus 81 Tmem220 ENSRNOG00000003367 ENSRNOT00000064764,ENSRNOT00000004516 2 2 2 89 10 53576934 53579198 TCATCCAAGAATTCAGTCGGT 60 53579249 53579267 GTACACGTAGACCCACGAC 60 NA Rattus norvegicus 81 Tmem220 ENSRNOG00000003367 ENSRNOT00000064764 1 1 2 80 10 53571907 53574523 GCTTATACATCCATCATGTGACC 60 53574652 53574670 AGGGTAAGTACTGCTGGGA 60 NA Rattus norvegicus 81 Tmem220 ENSRNOG00000003367 ENSRNOT00000064764 3 1 2 80 10 53571666 53571684 GTGAACGATCCAGATGCAG 59 53571916 53574528 AGGAAGGTCACATGATGGA 58 NA Rattus norvegicus 81 Adgrg1 ENSRNOG00000014963 ENSRNOT00000088048,ENSRNOT00000081223,ENSRNOT00000020921 1 3 3 80 19 10432512 10434236 CATCTTCTCCTTCCATAATGCC 59 10432453 10432471 TGCAGTTCCTTCTTGAGGT 59 NA Rattus norvegicus 81 Duxbl1 ENSRNOG00000025408 ENSRNOT00000052224 2 1 2 96 16 3759117 3759599 AACCCAGAGTTAAAGAAGCTG 58 3759041 3759060 CCTGGGAATCGATTCTTCTC 58 NA Rattus norvegicus 81 Rcvrn ENSRNOG00000003633 ENSRNOT00000004880 3 1 1 61 10 54246608 54246627 ATGAAGTGTTGGAGATCGTC 58 54250734 54250752 GTTCTTCACATCCTCAGGC 58 NA DesignNoJunction Rattus norvegicus 81 Rn60_11_0375.8 ENSRNOG00000049380 ENSRNOT00000075105 2 1 1 60 11 33890006 33890026 CTGTCTGTACAGAGCTACTCC 59 33892998 33893018 CTTGAGACATTCACCACTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Cxxc5 ENSRNOG00000032878 ENSRNOT00000085120,ENSRNOT00000045795 1 2 2 80 18 28654630 28654651 GCCATCAGATTTGCAAATTCAG 59 28654692 28655901 ACGGAAGCATCACCTTCTC 60 NA Rattus norvegicus 81 Slc6a7 ENSRNOG00000018644 ENSRNOT00000086464,ENSRNOT00000085841,ENSRNOT00000091220,ENSRNOT00000025209 3 4 4 114 18 56316005 56318429 AGTACTGGAGCCGATATGTC 59 56315910 56315928 AGAAACACGATGACCCAGG 60 NA Rattus norvegicus 81 Slc6a7 ENSRNOG00000018644 ENSRNOT00000086464,ENSRNOT00000085841,ENSRNOT00000091220,ENSRNOT00000025209 2 4 4 113 18 56316004 56325239 TACTGGAGCCGATATGTCC 58 56315909 56315927 GAGAAACACGATGACCCAG 58 NA Rattus norvegicus 81 Rnh1 ENSRNOG00000016416 ENSRNOT00000082284,ENSRNOT00000022241,ENSRNOT00000091292 2 3 3 80 1 214154583 214155040 AGAAGCTTCAGTTGGAATACTG 59 214154524 214154542 AGTCAGGTTTCACCCTGAG 59 NA Rattus norvegicus 81 Lyar ENSRNOG00000005374 ENSRNOT00000084093,ENSRNOT00000007154 2 2 2 80 14 77314621 77314726 AAGTTTCAGAACTGGATGAGG 58 77314561 77314579 TTCGGAGAAGATGTTCCAC 57 NA Rattus norvegicus 81 Dopey2 ENSRNOG00000051204 ENSRNOT00000076259 3 1 2 106 11 33980176 33980194 GAACAAGGTGGAAGCTCTG 59 33980263 33980888 AACAAGGACCTGTCAAAGGA 59 NA Rattus norvegicus 81 Dopey2 ENSRNOG00000051204 ENSRNOT00000083594 2 1 2 80 11 33980218 33980236 CTGACACGAGAAATCCAGG 58 33980283 33980889 AAACAAGGACAGGGAAGAG 57 NA Rattus norvegicus 81 Ncf2 ENSRNOG00000028016 ENSRNOT00000090174 2 1 4 167 13 70243538 70245909 AGAAGGACTATCTGTTCCAGG 59 70249705 70249723 GCACAAAGCCAAACAACAC 59 NA Rattus norvegicus 81 Ldlrad4 ENSRNOG00000016879 ENSRNOT00000022717,ENSRNOT00000083414 1 2 2 85 18 64033404 64040275 GGGCTTCAGAGATCATGTG 58 64040324 64040342 GAAACGACTGAACGGATCC 59 NA Rattus norvegicus 81 Fbxo41 ENSRNOG00000033202 ENSRNOT00000084049 1 1 2 115 4 117267291 117267309 TAAGGAACAGGAGCTGAGC 59 117264593 117264615 CCAGGAGCTCAATGAACTG 58 NA Rattus norvegicus 81 Ccdc159 ENSRNOG00000011799 ENSRNOT00000088255 1 1 2 80 8 22940147 22940165 ACTCAGACTTGAGCAAGGA 58 22940209 22941931 GCTCCAGGGATTTCTTGAC 58 NA Rattus norvegicus 81 Nudt6 ENSRNOG00000017420 ENSRNOT00000023437,ENSRNOT00000023448,ENSRNOT00000084825 2 3 3 80 2 124134792 124138861 CTGGAGAAGATATTGGAGACAC 58 124134733 124134753 TCAACAGAGACCTGAATTCTG 58 NA Rattus norvegicus 81 Ndufa8 ENSRNOG00000005668 ENSRNOT00000044885 1 1 2 80 3 15374120 15376472 TCTTTGGTGATGGTGAAAGTC 59 15374060 15374079 ATTGGTCTTATCGCACTGAG 58 NA Rattus norvegicus 81 Mctp2 ENSRNOG00000009932 ENSRNOT00000046645 2 1 2 80 1 133431542 133431560 AGTGTTTGATGAGGACGGA 59 133411269 133431501 TGTCCATCTCTAATAGACAGCA 59 NA Rattus norvegicus 81 AABR07070599.1 ENSRNOG00000059112 ENSRNOT00000088413 1 1 1 60 8 76479840 76479861 CTGGGAAATAGCAGAATTTGTG 58 76479800 76479818 CTTCACATCTTGCTGAAGC 57 NA DesignNoJunction Rattus norvegicus 81 Iqca1 ENSRNOG00000019592 ENSRNOT00000026491 1 1 2 80 9 97218476 97225639 CATAACTGGGACCATCGAG 57 97218414 97218433 GAGAGTTTGACCTTCAGAGC 58 NA Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000038946,ENSRNOT00000044092 3 2 6 80 7 132088067 132091530 TAAGATAGGCAGCATTTCCAG 58 132088007 132088026 GCCTTTCTCCTTGTTACAGG 59 NA Rattus norvegicus 81 Lbh ENSRNOG00000039902 ENSRNOT00000091904,ENSRNOT00000061284 2 2 2 81 6 24163062 24163080 ATGATGAATGCTCCCTCCA 59 24163125 24181544 ATGGGTCGGGAAAGATCTG 59 NA Rattus norvegicus 81 Lbh ENSRNOG00000039902 ENSRNOT00000091904 2 1 2 82 6 24160241 24163039 ATTCACTGCTCTGACTATCTGAG 60 24163081 24163099 CTGAGGCCAATCTCTTCCA 59 NA Rattus norvegicus 81 Mtus1 ENSRNOG00000010748 ENSRNOT00000079006,ENSRNOT00000090266,ENSRNOT00000037685,ENSRNOT00000047314 2 4 4 80 16 54374576 54374595 GTTGGAGATTGAAGCTAGCC 59 54374635 54375686 TTCTTGATTTCTGAAAGGGAGG 58 NA Rattus norvegicus 81 Ly49i5 ENSRNOG00000051661 ENSRNOT00000089484,ENSRNOT00000080133 1 2 3 80 4 164300938 164300957 GCATGGATGTAAACAGACCT 58 164146104 164300897 TGTAGGAACTTCAGTTCATCC 58 NA Rattus norvegicus 81 Eci3 ENSRNOG00000029549 ENSRNOT00000080929 3 1 3 112 17 30557839 30620754 ATAAGCAGGCCACAGAAGG 60 30621146 30621165 ACTGGATTTGAGGTCCATGG 60 NA Rattus norvegicus 81 Abcb8 ENSRNOG00000008557 ENSRNOT00000012222 2 1 2 85 4 7301402 7303978 TTCCCAGACAGTCTATGGC 59 7301053 7301071 GTACTCAAAGACTCGGGCT 59 NA Rattus norvegicus 81 Ube3a ENSRNOG00000015734 ENSRNOT00000021366 3 1 2 94 1 116674236 116674255 TTTACAACAGGCACAGACAG 59 116674309 116675340 GTAGGTAACCTTTCTGTGTCTG 59 NA Rattus norvegicus 81 Mb21d1 ENSRNOG00000046191 ENSRNOT00000073286 2 1 2 80 8 85795618 85795638 TGGCCTATTAGTACCAAAGGA 58 85795556 85795577 AACGGCTCTTCTTAGATTGG 58 NA Rattus norvegicus 81 Ldb3 ENSRNOG00000059166 ENSRNOT00000085414,ENSRNOT00000083623 1 2 3 80 16 10889647 10895050 CTGTGAGAAAGACTACATCAACC 59 10889589 10889609 ATAAACTTGTCACCAGCTTCC 59 NA Rattus norvegicus 81 Ptger3 ENSRNOG00000010325 ENSRNOT00000014034 1 1 2 82 2 263940428 263975748 AAGTTCTGCCAGATCAGGG 59 263975794 263975812 CACATCAGGACTGAGGAGC 60 NA Rattus norvegicus 81 Rcan2 ENSRNOG00000010350 ENSRNOT00000029593,ENSRNOT00000013956 2 2 2 84 9 19538017 19540703 TCTACTTTGCACAGGTCCA 59 19537951 19537969 ATGAGGAACTGTTTGGCAG 58 NA Rattus norvegicus 81 Krt25 ENSRNOG00000011196 ENSRNOT00000015150,ENSRNOT00000086498 3 2 2 81 10 87225551 87225903 GGAAACCAAAGCAAAGATTCC 58 87225490 87225509 TTAGAATCTTGCTGCGTTGG 59 NA Rattus norvegicus 81 Krt25 ENSRNOG00000011196 ENSRNOT00000015150 3 1 2 88 10 87227651 87227753 TGGTTCCAAGAGAAGAGCG 60 87227581 87227600 ATTTCCGTCAGCTCATTCCT 60 NA Rattus norvegicus 81 Fbxl5 ENSRNOG00000005261 ENSRNOT00000078326,ENSRNOT00000064636 2 2 2 80 14 71870248 71870266 ACTAAGTGGTCTCAGCTGG 59 71870310 71872638 ATACCAGTCACCTCTTGCC 59 NA Rattus norvegicus 81 Fbxl5 ENSRNOG00000005261 ENSRNOT00000078326,ENSRNOT00000064636 3 2 2 80 14 71872691 71872712 GTAGGAAAGATGAAAGTCGTGC 60 71872751 71874775 ATTCCTCTGCAGACTCTTCAG 60 NA Rattus norvegicus 81 Epha3 ENSRNOG00000030285 ENSRNOT00000090197,ENSRNOT00000040065 2 2 2 80 11 459036 459055 CTCTGACTTCGGACTTTCTC 58 446478 458998 CTTATTGGTATCTTTCCTCCTCTG 59 NA Rattus norvegicus 81 St18 ENSRNOG00000006200 ENSRNOT00000091649,ENSRNOT00000059625 2 2 3 80 5 12526928 12526949 AGATAAAGCGTTGCATACTCTC 59 12504497 12524951 TCATATGCAACCCTGAGCT 59 NA Rattus norvegicus 81 RGD1563888 ENSRNOG00000001554 ENSRNOT00000002119,ENSRNOT00000087665 3 2 2 80 11 17119497 17119516 CTGGGAACAGACAAAGACAC 59 17080148 17119459 AAGATTAGACTTTGGTACTCCCTC 60 NA Rattus norvegicus 81 Oas2 ENSRNOG00000049282 ENSRNOT00000077542,ENSRNOT00000072024,ENSRNOT00000091460 2 3 3 80 12 41354900 41355011 CTGAAGATCATCAAGGGAGG 58 41355053 41355072 GAGGAACACTACGATGTCAG 58 NA Rattus norvegicus 81 Cadm2 ENSRNOG00000030840 ENSRNOT00000087133 1 1 2 80 11 4246430 4246449 CCAGTAACAACCACTGTAGC 59 4177345 4246390 CAGAGAATTGGGATCTCTTCTG 58 NA Rattus norvegicus 81 Rapsn ENSRNOG00000011208 ENSRNOT00000081160 2 1 2 80 3 79861379 79861398 ACAATGATGACACCATGCTG 59 79861438 79865436 CTTTCTCATAGTCCTTGACCTG 58 NA Rattus norvegicus 81 Wscd1 ENSRNOG00000007869 ENSRNOT00000081954,ENSRNOT00000010358 1 2 2 80 10 58368974 58370203 AACTGGAAGAGCAAAGAATGG 59 58370245 58370263 CTTGAGCCAGTCTAGGACG 60 NA Rattus norvegicus 81 Chodl ENSRNOG00000001915 ENSRNOT00000031889,ENSRNOT00000090878 3 2 2 80 11 17549423 17549445 CTTTACCAGTGGAATGATGACAG 60 17549482 17553326 TTCTGTTGGATGAATCTCTGGT 60 NA Rattus norvegicus 81 C1galt1 ENSRNOG00000007804 ENSRNOT00000078680,ENSRNOT00000010375 3 2 2 84 4 33929641 33929659 GACATTCAGACGACAGTGG 58 33929704 33933646 GTGTTCTCATCTTTATGTTGGC 58 NA Rattus norvegicus 81 Usp15 ENSRNOG00000023202 ENSRNOT00000031191 1 1 2 80 7 66595858 66611102 GACACCTGGTATCTAGTAGATAGTC 59 66611138 66611158 CTGGTATTTGTCCCAACTGTC 59 NA Rattus norvegicus 81 LOC100359687 ENSRNOG00000045785 ENSRNOT00000039083,ENSRNOT00000085278 3 2 2 80 8 56499903 56501884 TGAATCTGGGTCCATTTGTG 58 56501927 56501945 AGAGCGAGTCAGTCTTCAG 59 NA Rattus norvegicus 81 Atp6v1h ENSRNOG00000030862 ENSRNOT00000085654 3 1 2 106 5 14297761 14297779 GGAGAATTTGGAGCAGCAG 59 14295173 14297694 CATCAAATGAGCTAAGGTCCTG 59 NA Rattus norvegicus 81 Zfp955a ENSRNOG00000048577 ENSRNOT00000082664,ENSRNOT00000073235 1 2 2 80 7 15785804 15786683 AATCGGAGAATTCAGGTGGT 59 15786726 15786744 TGTCTTCTGTTGGTGGGTC 60 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000048782,ENSRNOT00000001853 1 2 6 80 12 41258884 41302467 ACTGGTACCAACTGTGTAAGG 60 41258824 41258842 AGGCATAGATCGTGAGCAG 59 NA Rattus norvegicus 81 Nkiras2 ENSRNOG00000018095 ENSRNOT00000024543 3 1 2 102 10 88538698 88539124 GACAAGAAGGAGGTCACCA 59 88539190 88539208 TCTCTGATTTGGCCCAGTG 60 NA Rattus norvegicus 81 Asb7 ENSRNOG00000013795 ENSRNOT00000084082,ENSRNOT00000018436 3 2 2 83 1 127589308 127589327 GACCTTGCTCCATTTCTCTG 59 127570179 127589262 TTAACCGTGGGATCAGCTC 60 NA Rattus norvegicus 81 Hmgn3 ENSRNOG00000031032 ENSRNOT00000039917,ENSRNOT00000074896,ENSRNOT00000072225 2 3 3 81 8 90629317 90630521 CTGCTAAGAAAGAACCCGGA 60 90629255 90629273 CCTTCCTTTCCAGCTTCCT 59 NA Rattus norvegicus 81 Itgb8 ENSRNOG00000006569 ENSRNOT00000066545 3 1 2 95 6 147097888 147099179 GTTTGTGGCAGGAATTGTC 58 147097811 147097829 TTGTTCCATGACAGCACAG 58 NA Rattus norvegicus 81 Chka ENSRNOG00000016791 ENSRNOT00000023020 2 1 2 90 1 219092507 219104772 GGCAATCTTAAAGATGAGGTCC 59 219113745 219113763 CAGAACCATTGCTTCAGCC 60 NA Rattus norvegicus 81 Ntrk3 ENSRNOG00000018674 ENSRNOT00000046849 2 1 4 85 1 139924861 139924879 GAAGGGCCATACCAGAAGG 60 139903201 139924815 GGATTAAAGAGTGTGGAAGCTG 59 NA Rattus norvegicus 81 Msl2 ENSRNOG00000023021 ENSRNOT00000039593 3 1 1 60 8 109456217 109456235 TGCCTTACTTCCGACAGTC 59 109476796 109476817 ATAGGATCTTGAAGCAAATGCC 59 NA DesignNoJunction Rattus norvegicus 81 Zfp385a ENSRNOG00000036833 ENSRNOT00000083935,ENSRNOT00000086554,ENSRNOT00000064261 3 3 3 83 7 144943934 144943952 GAATCAGGAGATCCGGCTC 60 144942058 144943888 GCCATTCTCCATGGAAACTG 59 NA Rattus norvegicus 81 Elf2 ENSRNOG00000010815 ENSRNOT00000047635 3 1 2 80 2 140366105 140366126 GACGATGAGACTTACATGATGC 59 140324569 140366065 TGATGCTTCCACTGTTTCTG 59 NA Rattus norvegicus 81 Lss ENSRNOG00000054549 ENSRNOT00000078412 3 1 4 80 20 12859745 12860304 AGATTATCTTTGGCTGGGC 58 12858056 12858074 ACAGCAAATGAAGTGTCCC 58 NA Rattus norvegicus 81 Tmem255b ENSRNOG00000026336 ENSRNOT00000076516 3 1 2 81 16 81203043 81203973 ATGTCTATCAGACAGAGGTCAC 59 81204013 81204033 CAGCAGTAGCATGTGTTACTC 59 NA Rattus norvegicus 81 Gsta1 ENSRNOG00000013484 ENSRNOT00000085195,ENSRNOT00000018325 1 2 2 80 9 27441382 27441402 CCATTCTCAACTACATTGCCA 59 27440316 27441341 CTGCATACATGTCGATGAGG 59 NA Rattus norvegicus 81 Bckdk ENSRNOG00000019485 ENSRNOT00000026466 3 1 2 81 1 199352976 199353001 GTAGTCTTCCTTTCATCATTGC 58 199353285 199353304 GGAAGTCTGTCAACTTCTGG 58 NA Rattus norvegicus 81 Ptprf ENSRNOG00000019977 ENSRNOT00000027271 1 1 2 80 5 137084511 137084532 GTTCAAAGACTTCCTTCCTGTG 60 137076246 137084470 TCAATCTGCAATGCACCTG 59 NA Rattus norvegicus 81 Ttk ENSRNOG00000029055 ENSRNOT00000051612 2 1 2 80 8 91384942 91387864 AAAGGCTGATAAAGAGTCACCA 60 91387903 91387923 CTGCTACTAGGTGTCTCACAG 60 NA Rattus norvegicus 81 Fmnl1 ENSRNOG00000003207 ENSRNOT00000065373 3 1 2 81 10 91268536 91272773 CATCATGAACTACCAGGTGTG 59 91272814 91272834 AATGTTGCTGTCTTCATTCCG 60 NA Rattus norvegicus 81 Fmnl1 ENSRNOG00000003207 ENSRNOT00000087218 2 1 2 80 10 91269642 91272774 CAACTTCAAGGAGGTGTGC 59 91272815 91272836 TCAATGTTGCTGTCTTCATTCC 60 NA Rattus norvegicus 81 Cd6 ENSRNOG00000020884 ENSRNOT00000028347 1 1 2 80 1 226851983 226852004 CAGTTCTGAATCCGACTATGAG 59 226850569 226851944 CTCTGGGAATTGTAGAAGGTG 58 NA Rattus norvegicus 81 Clip1 ENSRNOG00000001247 ENSRNOT00000078530 1 1 4 107 12 38446875 38446894 CTGGAACTTCAACTCAAGGA 58 38447618 38450292 AATCATTTGCTGACTCTCCTG 58 NA Rattus norvegicus 81 Plcb4 ENSRNOG00000033119 ENSRNOT00000049855,ENSRNOT00000045393 2 2 3 80 3 128914908 128919227 AATAGAAAGCGCTGATCAAGAG 59 128919268 128919286 TGACTGAAGTCATCGGCAG 60 NA Rattus norvegicus 81 Tmem19 ENSRNOG00000003985 ENSRNOT00000090560,ENSRNOT00000005310 1 2 2 80 7 58340390 58342731 CCTATTATGGTAGCTTGCGG 58 58340329 58340351 CATTACAGGAGATCACAACAGAG 59 NA Rattus norvegicus 81 Pcmtd1 ENSRNOG00000005730 ENSRNOT00000061903,ENSRNOT00000007769 1 2 2 92 5 12141202 12143543 CTATAGAGGATCAGTTGACACAG 58 12141132 12141150 GTACTAGTGGTGCGAAGGA 59 NA Rattus norvegicus 81 Ccng1 ENSRNOG00000003256 ENSRNOT00000079646,ENSRNOT00000065633 1 2 2 80 10 25907242 25907260 AAGCTACTACTGCCTTCCA 58 25906665 25907201 GATCGTTTCTCCTTTCAAATGG 58 NA Rattus norvegicus 81 Ccng1 ENSRNOG00000003256 ENSRNOT00000079646,ENSRNOT00000065633 3 2 2 80 10 25906506 25906610 TTTCTAAGGCAAAGCCTTCTG 59 25906446 25906469 CTGTTAACTCCACATACTTCAGTG 60 NA Rattus norvegicus 81 Ccng1 ENSRNOG00000003256 ENSRNOT00000079646 1 1 2 134 10 25906115 25906133 AAACAAGTGTTCCAAGCCG 59 25904321 25906017 ATGTACTCGGTTCCCATGG 59 NA Rattus norvegicus 81 Ikzf2 ENSRNOG00000027430 ENSRNOT00000057849,ENSRNOT00000087779 3 2 2 80 9 76646235 76666316 CCACTCTGTGGGTAAACCT 59 76646173 76646191 TCCTTGTGTTCCTCCAGTG 59 NA Rattus norvegicus 81 Tram1 ENSRNOG00000007892 ENSRNOT00000045373 1 1 2 80 5 5312638 5316369 TCTACCTCCAGGAGAAAGG 57 5316413 5316431 GTTCATCACGTTCATCACG 57 NA Rattus norvegicus 81 Slc6a2 ENSRNOG00000016311 ENSRNOT00000022285 3 1 3 86 19 15396486 15396505 CAAATTCTTCAGCATACGGG 57 15392031 15395817 TCTAGAGCCAATAGGTGGT 57 NA Rattus norvegicus 81 Snap91 ENSRNOG00000023861 ENSRNOT00000084437 1 1 2 80 8 94494286 94500672 ACCTGGAAACAAATCTGGTG 58 94489472 94489496 GGTGTAGAATTAGGAGATGTAACAG 59 NA Rattus norvegicus 81 Itgb6 ENSRNOG00000008346 ENSRNOT00000086576,ENSRNOT00000011030 1 2 2 80 3 46711075 46721470 CAACCCTTGCAGTAGTATCC 58 46711014 46711033 TCAGCATCATCAGTCAATGG 58 NA Rattus norvegicus 81 Hdgfrp3 ENSRNOG00000019740 ENSRNOT00000026754 1 1 2 84 1 143712633 143718171 AGTCCTACACTTCAAAGAAGTC 58 143712570 143712589 TTCTCCTCTTCTTTGCAGTC 58 NA Rattus norvegicus 81 Npat ENSRNOG00000024934 ENSRNOT00000090114 1 1 2 88 8 58144781 58144970 CTGGAGAAGATGCAGAGCT 59 58145020 58145040 GGCAGGAGATTTAGAAGACAG 58 NA Rattus norvegicus 81 Adck2 ENSRNOG00000010005 ENSRNOT00000013277,ENSRNOT00000082241 2 2 2 87 4 67370719 67370737 AAGAACACCCTCACACTGG 60 67371887 67372036 CCAGCTTCACCTTATGGGT 59 NA Rattus norvegicus 81 Me1 ENSRNOG00000009715 ENSRNOT00000013244,ENSRNOT00000078977 1 2 2 80 8 94326201 94326222 TTATCAGTATCCACGACAAAGG 58 94322635 94326160 TCACCACAATAGCCTTGAC 58 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000031367 2 1 6 81 13 84474333 84474356 TCTGGATCTGAATGGGAAGG 59 84474399 84490605 TTCAACCATGGCTGTTAACC 59 NA Rattus norvegicus 81 Kcnq5 ENSRNOG00000013781 ENSRNOT00000018552 1 1 2 80 9 27630493 27634473 AAGCAGAGTCAGAAGCTGAG 60 27630432 27630451 TGCTTGTCTGCTCTTAATGC 59 NA Rattus norvegicus 81 Tmem2 ENSRNOG00000012782 ENSRNOT00000087386 1 1 2 89 1 239442200 239442218 CATCGACAGACTCATTGCT 58 239442270 239443440 TCTGCAAATGCTGAATTCTG 57 NA Rattus norvegicus 81 Arid5b ENSRNOG00000000635 ENSRNOT00000076758,ENSRNOT00000000787 1 2 3 80 20 21789423 21840972 ATGAGTTTGCGCCAAATCTC 60 21841015 21841033 TTGAGCCACTGAAGGAGTC 59 NA Rattus norvegicus 81 Rab11b ENSRNOG00000007648 ENSRNOT00000078122 1 1 2 80 7 18600683 18600950 CCTTTGCAGAAAGAAACTTGTC 59 18600624 18600644 GGATGTTCTTGAATGCTTCCT 59 NA Rattus norvegicus 81 Slc21a4 ENSRNOG00000010388 ENSRNOT00000000026 1 1 5 80 4 176279633 176279653 AAGGCCAAGGAAGAAACGA 60 176271189 176271208 TGAACAGCATGTAAATCGGG 59 NA Rattus norvegicus 81 Krt26 ENSRNOG00000033617 ENSRNOT00000085677 2 1 2 80 10 87245855 87245876 CGACTTAGAAATACAACGTGAG 57 87245674 87245814 AGAACTCCCATTTCCTCCT 58 NA Rattus norvegicus 81 Apom ENSRNOG00000000850 ENSRNOT00000001126,ENSRNOT00000078273 1 2 2 80 20 5122612 5122896 ATGGACGACAAAGAGACCC 59 5122550 5122568 CAACTCTTCCATGGTGGGA 59 NA Rattus norvegicus 81 Flot2 ENSRNOG00000009681 ENSRNOT00000014104 2 1 4 80 10 65316644 65316665 TTCTGACTACAAGCAGTATGTG 58 65310835 65316605 TCTAGGGAAATCCTCTGAGTG 58 NA Rattus norvegicus 81 Fmo2 ENSRNOG00000003510 ENSRNOT00000091389 3 1 2 140 13 80759741 80759759 ATCTTCCCAACCGTAGAGC 59 80755698 80756759 CTCTGGCTTTCCAAACAGG 59 NA Rattus norvegicus 81 Cand2 ENSRNOG00000010473 ENSRNOT00000086660 2 1 3 81 4 147687633 147689061 CACTGACTGGATCTCTGGG 59 147692075 147692094 CAACTCTGACATCAGGTCAC 58 NA Rattus norvegicus 81 Defb24 ENSRNOG00000036897 ENSRNOT00000055408 3 1 1 60 3 148057397 148057416 GCCATATTTGTGACAACGGA 59 148051608 148051627 CCATGCATTGAAGGGTAGGA 60 NA DesignNoJunction Rattus norvegicus 81 Slc4a1 ENSRNOG00000020951 ENSRNOT00000028445 2 1 2 89 10 90308311 90308335 GGAACTGGAACATGTAATAGAACAG 60 90307290 90308264 TCTGTGGGAAGAGCTTCTG 59 NA Rattus norvegicus 81 AABR07055356.1 ENSRNOG00000047863 ENSRNOT00000075554 2 1 1 61 7 1737909 1737927 TCTGATAGGTGGAGGAGCT 59 1737853 1737871 ATGTCAGCTTCTCCAGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Rgs20 ENSRNOG00000008100 ENSRNOT00000089273,ENSRNOT00000010682 3 2 2 93 5 14490478 14493064 CTCTCCGAAAGAGGTCAGC 60 14493119 14493139 TTGAGCGTCATCAAAGATGTG 59 NA Rattus norvegicus 81 Pitpnm2 ENSRNOG00000029260 ENSRNOT00000048528,ENSRNOT00000091084 3 2 3 82 12 37900826 37900844 CTCCATCAGCCTTTCTCCC 60 37900889 37900990 CTGTGATGAACTGACACTGC 59 NA Rattus norvegicus 81 Lonp2 ENSRNOG00000015162 ENSRNOT00000020770,ENSRNOT00000087660,ENSRNOT00000048345 1 3 3 80 19 21479336 21481581 GAAGCTCCAGATCTTAGATGC 58 21479276 21479296 CCTTCAATCTGTCTGACAAGC 59 NA Rattus norvegicus 81 Cpeb2 ENSRNOG00000005043 ENSRNOT00000081878,ENSRNOT00000006727 3 2 3 81 14 72335551 72335569 GTTCTCAGCCTTTGGATCC 58 72333613 72335507 ATCATAGCAAGTTCCACAGC 58 NA Rattus norvegicus 81 Zfp472 ENSRNOG00000004572 ENSRNOT00000084634,ENSRNOT00000006044 1 2 2 80 7 15247728 15248595 AGGAAGCCTGAGAACTCTG 59 15248639 15248657 CTCTGTCGTTGCGTTTCTC 59 NA Rattus norvegicus 81 Glyat ENSRNOG00000012142 ENSRNOT00000087526 1 1 2 80 1 229077694 229078805 CTGATTTGGGTTCCCAGTC 58 229078847 229078867 CTGAGTGTTTGACTTGGAGAG 59 NA Rattus norvegicus 81 Fto ENSRNOG00000011728 ENSRNOT00000086829 1 1 2 80 19 17024133 17045085 AATGTGTATAAACTGAGGCTCC 58 17024074 17024094 ATAGAACTCGTCATCTTTGGG 58 NA Rattus norvegicus 81 Nelfe ENSRNOG00000000420 ENSRNOT00000076352,ENSRNOT00000000478 2 2 3 81 20 4534117 4534222 CTTTCCGTAGGTCAGACTC 57 4534266 4534285 GTCATGTCCTCTCCATACAC 58 NA Rattus norvegicus 81 Prss39 ENSRNOG00000023858 ENSRNOT00000079413,ENSRNOT00000034214 3 2 2 83 9 41007334 41007353 CTACAAGCCCTCACAAACAC 59 41007398 41008032 TTGCCACAGATTTCCTTCTG 59 NA Rattus norvegicus 81 Cacna1c ENSRNOG00000007090 ENSRNOT00000052017 1 1 3 90 4 150797187 150797205 CAACTTCGACAACTTCGCC 60 150788365 150797134 ATCATTGACCCAGTACAGCA 59 NA Rattus norvegicus 81 Slc16a11 ENSRNOG00000018748 ENSRNOT00000025372,ENSRNOT00000067128 3 2 2 93 10 56826114 56826218 TCTGTCAGGCTTCCTAAGG 58 56826275 56826293 CATGTAGATGAAGCTGCCA 58 NA Rattus norvegicus 81 Pigp ENSRNOG00000039850 ENSRNOT00000077233,ENSRNOT00000068743 1 2 2 80 11 34592889 34592909 TGGTTACGTGCTCTTATTTGG 59 34592275 34592852 GCATAGTTATCTGTGATCGTATGG 59 NA Rattus norvegicus 81 Pigp ENSRNOG00000039850 ENSRNOT00000077233,ENSRNOT00000068743 3 2 2 81 11 34592889 34592910 TTGGTTACGTGCTCTTATTTGG 59 34592275 34592852 GCATAGTTATCTGTGATCGTATGG 59 NA Rattus norvegicus 81 Rpain ENSRNOG00000006913 ENSRNOT00000044363 1 1 2 104 10 57611214 57611232 AATGTGAACGAGCACAGTG 59 57611300 57613519 CTTATAAGCCAGGCAGCTC 58 NA Rattus norvegicus 81 Rnf41 ENSRNOG00000023456 ENSRNOT00000090689,ENSRNOT00000029778 3 2 2 95 7 2850708 2851376 ATCCTTGAGTGGGTGAACTC 60 2851434 2851452 CTTGATTACAGCCTGCAGC 59 NA Rattus norvegicus 81 Fank1 ENSRNOG00000018327 ENSRNOT00000081610,ENSRNOT00000024751 1 2 2 80 1 205911975 205922912 CGGTGTCATTTACACAGGC 59 205922954 205922974 TTCAGTCGAAATCTGTACAGC 59 NA Rattus norvegicus 81 Slc2a9 ENSRNOG00000005302 ENSRNOT00000042200 2 1 2 80 14 77079507 77081919 AGGACAAAGAACTGGTCCTG 60 77081960 77081980 GTTGTACCCATAGAGGAAGGA 59 NA Rattus norvegicus 81 Mlec ENSRNOG00000021725 ENSRNOT00000081343 1 1 3 137 12 47228688 47228706 CAACAAGAACAGGGTGCAG 59 47228804 47243804 ATAAATAATAAGCGGCAGAGGC 59 NA Rattus norvegicus 81 Ampd2 ENSRNOG00000019240 ENSRNOT00000026051 1 1 2 80 2 210872933 210872953 CAAGTCCAAGGCCAAATATCC 59 210868866 210872891 AGACCACTTCGAGCTTCTG 59 NA Rattus norvegicus 81 Slc30a8 ENSRNOG00000004747 ENSRNOT00000079792 3 1 2 83 7 91865752 91867158 TTCATGTTGCTACAGCTGC 59 91867204 91867223 GCAGATCAAAGCTACTGCTG 59 NA Rattus norvegicus 81 Wnk3 ENSRNOG00000002537 ENSRNOT00000047444 1 1 2 80 X 20393852 20394107 GCAACTAGTTCTCAGGAGC 58 20394150 20394169 GGGCATAACAGAAGACTGAC 58 NA Rattus norvegicus 81 Wnk3 ENSRNOG00000002537 ENSRNOT00000047444 3 1 2 81 X 20393855 20394110 ACTAGTTCTCAGGAGCAGC 59 20394152 20394173 ATATGGGCATAACAGAAGACTG 58 NA Rattus norvegicus 81 Mrpl30 ENSRNOG00000049330 ENSRNOT00000083245,ENSRNOT00000075242,ENSRNOT00000088544 3 3 3 129 9 44493705 44571061 CTGGGACTACAGAAGGCAC 60 44571154 44571172 CTTCTGTGGGAAGTCCCTG 60 NA Rattus norvegicus 81 Layn ENSRNOG00000011228 ENSRNOT00000088607 3 1 2 85 8 55453423 55458297 CAAATATTCTGACGGTGAAGCA 59 55453359 55453377 CTCTGCGTTCTTTGGTGTC 59 NA Rattus norvegicus 81 Tusc5 ENSRNOG00000022239 ENSRNOT00000063941,ENSRNOT00000082301 2 2 2 89 10 63476653 63490909 CCATCATGTCTCGAAGTAGTG 58 63476584 63476602 TGAAGGTGATGCTAAGCAG 58 NA Rattus norvegicus 81 Cd300lg ENSRNOG00000020837 ENSRNOT00000073879 3 1 2 83 10 89986711 89986729 CCTTCCAGCCTCTTACACC 60 89986775 89987406 CAGGAGAAGTCAGTTCTGGG 60 NA Rattus norvegicus 81 LOC103693683 ENSRNOG00000046663 ENSRNOT00000071728,ENSRNOT00000091821,ENSRNOT00000071897,ENSRNOT00000073643 1 4 4 84 13 91189251 91222367 CATCACTGTCCAAGGTTCAG 59 91189186 91189204 CAGGAGGCACATCACTAGG 60 NA Rattus norvegicus 81 Tnnt3 ENSRNOG00000020332 ENSRNOT00000080339 3 1 5 80 1 215680176 215680194 GGAGAAGCTGAAACGTCAG 59 215681296 215683401 GCCTTCTTGCTGAACTTGG 60 NA Rattus norvegicus 81 Oxr1 ENSRNOG00000056487 ENSRNOT00000079962 3 1 5 81 7 80750780 80777746 AATACACTCTGATCACCACAC 58 80777789 80777807 AAAGATTCTGGCTCCAGGT 59 NA Rattus norvegicus 81 Oxr1 ENSRNOG00000056487 ENSRNOT00000091355,ENSRNOT00000078354 1 2 5 80 7 80745186 80745205 TGGTCAAGAAGATGGCAGAG 60 80745248 80777746 GTGTGGTGATCTCCCACTC 60 NA Rattus norvegicus 81 Fgd1 ENSRNOG00000038970 ENSRNOT00000003443 1 1 1 80 X 20124605 20124626 TTCCATATTGCCAATGAACTCC 59 20124666 20125370 GGCACAGAATACCTGATCCA 60 NA Rattus norvegicus 81 Nrap ENSRNOG00000016714 ENSRNOT00000038038,ENSRNOT00000038017 3 2 2 80 1 277160342 277160361 GATTACAACTACCCAGCCAC 58 277153360 277160301 CCTGTAGTTGACATCCTTCAG 58 NA Rattus norvegicus 81 Nsa2 ENSRNOG00000016530 ENSRNOT00000022138,ENSRNOT00000081472 1 2 2 80 2 27947387 27947406 CCTGAAGGCTAAGCTCTACC 60 27947252 27947349 CTCTTCTCATGCATCTTAATGGTC 60 NA Rattus norvegicus 81 Gdf2 ENSRNOG00000057751 ENSRNOT00000085255 3 1 1 80 16 10267898 10267918 TGTACAACAGATACACTACGG 57 10267959 10271052 ATATAGCATCTTCCACGCTG 58 NA Rattus norvegicus 81 Nmi ENSRNOG00000027502 ENSRNOT00000030373 3 1 1 81 3 37464442 37464552 AGATTTCAGGTTCATGTGGAC 58 37464381 37464399 TTGTCTGCTCCTCAGACAG 59 NA Rattus norvegicus 81 Myo1f ENSRNOG00000008409 ENSRNOT00000011513 1 1 1 80 7 18463328 18463507 TACTATCAGCTTCTGGAAGGG 59 18463543 18463567 GAGGTAGTAATAGTAGTCTGGTGTC 60 NA Rattus norvegicus 81 Lalba ENSRNOG00000010811 ENSRNOT00000014456 2 1 1 80 7 140089820 140090268 ATCTCCTGTGACAAGTTCCTG 60 140089760 140089779 GATCCCTTTGATAGCCACGA 60 NA Rattus norvegicus 81 Ankfy1 ENSRNOG00000016212 ENSRNOT00000021816 2 1 1 80 10 59279498 59279519 ATAGCAGTGAGTCATTCATCAG 58 59279557 59281609 TCTTCAAATCACTGTACTGCTC 59 NA Rattus norvegicus 81 Mdm2 ENSRNOG00000006304 ENSRNOT00000066767,ENSRNOT00000086116 1 2 2 80 7 60727117 60727844 AGTGAAACAGAAGAGAACACAG 59 60727058 60727076 GCTCTCATCAAAGGACAGG 58 NA Rattus norvegicus 81 RGD1563441 ENSRNOG00000021540 ENSRNOT00000012061 1 1 1 165 10 55940897 55940915 AAGAAAGCGGAGAGGATGG 60 55941044 55941162 GGACAGTAGAGCACATTGC 59 NA Rattus norvegicus 81 Nr1h2 ENSRNOG00000019812 ENSRNOT00000026862 1 1 1 82 1 100556833 100557295 CCATCGAGATCATGTTGCT 58 100556769 100556788 GTAGGTGAAGTCCTTCAGGA 59 NA Rattus norvegicus 81 Baalc ENSRNOG00000004697 ENSRNOT00000006411 1 1 1 62 7 77820773 77820791 GAAGCAGAATGGCCTTTGG 60 77834815 77834833 TCTCTTGCAGACATTCGCT 59 NA DesignNoJunction Rattus norvegicus 81 Abcc12 ENSRNOG00000015666 ENSRNOT00000021095 1 1 2 86 19 21554277 21554574 CTTAGGGCCGACAGTTCTC 60 21554624 21554642 CACAAGCAGATGCTGATCC 59 NA Rattus norvegicus 81 Krt34 ENSRNOG00000051302 ENSRNOT00000076980,ENSRNOT00000018048 1 2 3 81 10 87953596 87953614 TAAGTCTGAGAACGCCAGG 59 87952707 87953551 AGTCTGGTACTTGGTCCTG 58 NA Rattus norvegicus 81 Schip1 ENSRNOG00000009276 ENSRNOT00000085876 1 1 2 130 2 172349988 172361534 AAGGCACAGAAGAATGAGAG 58 172322176 172349897 CTTTGTAGTCTCGAGGAAAGG 58 NA Rattus norvegicus 81 Cttn ENSRNOG00000047280 ENSRNOT00000054859,ENSRNOT00000079805 1 2 3 87 1 217620426 217620444 ATTGACAAGGACAAGGTGG 58 217619935 217620378 TTACATAGTCTTTCTGGGACTC 57 NA Rattus norvegicus 81 Cttn ENSRNOG00000047280 ENSRNOT00000054859,ENSRNOT00000079805 2 2 3 89 1 217620427 217620446 GAATTGACAAGGACAAGGTG 57 217619935 217620378 TTACATAGTCTTTCTGGGACTC 57 NA Rattus norvegicus 81 Cep164 ENSRNOG00000029826 ENSRNOT00000072712,ENSRNOT00000022583 1 2 2 80 8 50080507 50080603 AGAACCAAATTAGAGCCGAG 58 50080446 50080464 CCCTTTCAGCTTTCTGGAG 58 NA Rattus norvegicus 81 Cep164 ENSRNOG00000029826 ENSRNOT00000072712,ENSRNOT00000022583 3 2 2 80 8 50126382 50126402 ACCTATCCTCTTAGGTGACCA 60 50120504 50126342 TCAAGGATTTCTTGCTCACTG 59 NA Rattus norvegicus 81 Kbtbd4 ENSRNOG00000009397 ENSRNOT00000068124,ENSRNOT00000084833 2 2 2 87 3 79731718 79731736 AGAGGCAATAGACGCTTGG 60 79731783 79733263 CCCAATTTCCTTTAAGCTAGTCC 60 NA Rattus norvegicus 81 Mme ENSRNOG00000009514 ENSRNOT00000088565,ENSRNOT00000042576 1 2 2 80 2 153847858 153847876 GGGAACATGGAGAATGCTG 59 153847919 153848789 CAAATCTTCAACCACGTGCT 60 NA Rattus norvegicus 81 Kcnh7 ENSRNOG00000007528 ENSRNOT00000085246 3 1 2 82 3 48809686 48810131 TGTCAAAGTTTCACGTTCCT 58 48801400 48801419 TTGAATCTGATGTGGATCCC 57 NA Rattus norvegicus 81 Nfrkb ENSRNOG00000008278 ENSRNOT00000083659 1 1 2 86 8 32545800 32545906 AGGCTTTCTGTAAGCAGGA 59 32546689 32546707 TAGGCCGAACCACATAGTC 59 NA Rattus norvegicus 81 Wdr48 ENSRNOG00000016942 ENSRNOT00000024172 3 1 2 155 8 128577143 128585820 GCAGGTTTCCTATGTAATTCGA 59 128585935 128587752 TATGGATCTTGCTTGTGCTG 58 NA Rattus norvegicus 81 Sec31a ENSRNOG00000002251 ENSRNOT00000033489 2 1 3 82 14 10879809 10879827 TTGAGGAGGATTCTCGTGG 59 10879871 10884523 TTCCTCTTTAATGCGCTTCTC 59 NA Rattus norvegicus 81 Wnk4 ENSRNOG00000020441 ENSRNOT00000076366,ENSRNOT00000027770 2 2 3 81 10 89181820 89181839 CCTTCAAGACCGTGTATCGA 60 89181883 89183350 GAGAGTTTCCGAGTCTGCA 60 NA Rattus norvegicus 81 Aplp2 ENSRNOG00000047179 ENSRNOT00000074457 2 1 2 80 8 32306681 32306699 GCTCTGAGGAAAGTGAGGA 59 32302565 32306639 TTCCAGATCCTTCGTTCTCAG 60 NA Rattus norvegicus 81 Aplp2 ENSRNOG00000047179 ENSRNOT00000070818 2 1 2 81 8 32306682 32306700 AGCTCTGAGGAAAGTGAGG 59 32305141 32306637 GCTGAGTGTCTTCGTTCTC 58 NA Rattus norvegicus 81 Slc17a7 ENSRNOG00000020650 ENSRNOT00000064184 3 1 2 81 1 101166911 101166929 GGTCTGTCCACAAACAGGA 60 101166973 101167225 CAGTTGAACTGGGCTTTCTC 59 NA Rattus norvegicus 81 Prdm1 ENSRNOG00000000323 ENSRNOT00000048270,ENSRNOT00000076541 3 2 3 80 20 49468467 49468716 CTCAAACCTGAAGGTCCAC 58 49468405 49468423 TGAGTAAAGCCCTTGTTGC 58 NA Rattus norvegicus 81 Rbms2 ENSRNOG00000003076 ENSRNOT00000088619 1 1 2 80 7 2556519 2556540 AGACATCTCCTGTACAAGTACC 59 2555896 2556478 TCAGAACTGAGCCTGAAGG 59 NA Rattus norvegicus 81 Hnf4a ENSRNOG00000008895 ENSRNOT00000078703 3 1 3 151 3 159937100 159941150 CATGGGCAATGACACATCC 59 159941264 159941283 TCCTGAAGAATCCCTTGCAG 60 NA Rattus norvegicus 81 Wls ENSRNOG00000036816 ENSRNOT00000080305 1 1 2 81 2 266317853 266353086 AGGAATGCTGATGCTCCAG 60 266353131 266353149 TATGGTGGTTCTTCCGGAC 59 NA Rattus norvegicus 81 Arhgap6 ENSRNOG00000003956 ENSRNOT00000036502 3 1 2 93 X 26357790 26357946 CGAGTAAGACAAGAGATGAAACAC 60 26357716 26357737 CACAGAATGAACATGTCCAGAC 60 NA Rattus norvegicus 81 Hps4 ENSRNOG00000000661 ENSRNOT00000000824 2 1 2 82 12 50288802 50292760 ATTGAGGAGGTGTACCACAG 59 50288739 50288757 GTCTCATCTCTGGGCAGTG 60 NA Rattus norvegicus 81 Rbck1 ENSRNOG00000006695 ENSRNOT00000085995,ENSRNOT00000045314,ENSRNOT00000085849 3 3 3 80 3 147803945 147803963 TACATGCACACTGTCACCA 59 147803022 147803902 GTCCAGGAATACCATGTCCT 59 NA Rattus norvegicus 81 Akap12 ENSRNOG00000019549 ENSRNOT00000083702 2 1 3 92 1 40879926 40899159 ATTACCATCACAGTTGGACAG 58 40899213 40899231 ATCTTCAACAGCTGTGGAG 58 NA Rattus norvegicus 81 Rpl11 ENSRNOG00000026260 ENSRNOT00000079823,ENSRNOT00000030043 1 2 3 92 5 154391198 154391216 GACAAGAAGCGCAGAACAG 60 154390866 154391144 GATGCCATCATACTTCTGCTG 59 NA Rattus norvegicus 81 Rpl11 ENSRNOG00000026260 ENSRNOT00000079823,ENSRNOT00000030043 3 2 3 94 5 154391198 154391216 GACAAGAAGCGCAGAACAG 60 154390864 154391142 ATGATGCCATCATACTTCTGC 59 NA Rattus norvegicus 81 Pfkfb1 ENSRNOG00000000165 ENSRNOT00000033656 1 1 3 81 X 23139471 23139491 CCAGGTTACAGAAGATCTGGA 59 23124618 23139428 AACTGTGGTATGGAGGAGC 59 NA Rattus norvegicus 81 Arid1b ENSRNOG00000017030 ENSRNOT00000022939 3 1 2 85 1 46169890 46169911 GAATCAGTAACTTTCAGCAGAG 57 46169956 46182856 TCTGGAGTAGTTACCTTGGG 58 NA Rattus norvegicus 81 Bves ENSRNOG00000043199 ENSRNOT00000076504,ENSRNOT00000066167 2 2 2 80 20 50447314 50448805 TCCTAAAGGGAAGAATGAAGGT 59 50448842 50448864 CAGGAGAATCTATAAAGGCACAC 59 NA Rattus norvegicus 81 Zfp787 ENSRNOG00000015456 ENSRNOT00000084899,ENSRNOT00000059069 2 2 2 81 1 71434849 71434867 AAGAAGCTTGGTCTCCAGG 59 71434911 71445501 ATGATGAGGATGTCCACTGG 59 NA Rattus norvegicus 81 Cyp2e1 ENSRNOG00000012458 ENSRNOT00000078080 2 1 2 82 1 213521105 213527176 TTTCTGCAGGGTATCCCAC 59 213527219 213527240 TTGTCCTACTCTTTGGTAAAGC 58 NA Rattus norvegicus 81 Prkca ENSRNOG00000003491 ENSRNOT00000004699 2 1 2 80 10 96206469 96206488 TAATGGAGCACAATGTGTCC 58 96204363 96206426 GGTGTTTGGTCATAAGCCC 59 NA Rattus norvegicus 81 Dctd ENSRNOG00000013215 ENSRNOT00000017670 3 1 2 60 16 47179845 47179864 GGCTTCTGTTTAAATTGGCT 57 47178444 47178464 ATCTTGCTGTACTTTGGTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Map4k4 ENSRNOG00000014013 ENSRNOT00000019180 2 1 2 80 9 46763227 46765332 CTGTAAGGATTGACTTGACTGC 59 46765372 46765391 AGTCTGTCACTTTGTGAGGT 59 NA Rattus norvegicus 81 Mon2 ENSRNOG00000004185 ENSRNOT00000045130 2 1 3 80 7 66777514 66777535 TGTAAACCTCCACAGTATGGAC 60 66777574 66778162 CGGTGCAAATAGTTGGATCTG 60 NA Rattus norvegicus 81 Klhl38 ENSRNOG00000007896 ENSRNOT00000079961,ENSRNOT00000010484 1 2 2 80 7 98194923 98194941 GCAGTAAAGGACCAAAGGC 59 98189986 98194880 GTGGTAAACCTGGATAAGGC 58 NA Rattus norvegicus 81 Utrn ENSRNOG00000011058 ENSRNOT00000086574,ENSRNOT00000016273 3 2 2 80 1 6467830 6467849 CCTGAAGTCTGTGGAGAAGG 60 6467423 6467789 TGCAGATTTCTTTGCTCTTCC 59 NA Rattus norvegicus 81 Abca8a ENSRNOG00000004147 ENSRNOT00000065947,ENSRNOT00000005665 2 2 2 80 10 98342514 98344718 GCATTGACGACTATAAGAACAGAG 60 98342457 98342477 CATGACCAAACCAGTATGCAG 60 NA Rattus norvegicus 81 Myl7 ENSRNOG00000014409 ENSRNOT00000019335,ENSRNOT00000085847 2 2 2 80 14 86146443 86146639 ATTCAAGGAAGCCTTCAGC 58 86146381 86146401 TGGGAATAAGTCTCCTTCAGG 59 NA Rattus norvegicus 81 Fat1 ENSRNOG00000030954 ENSRNOT00000067486 3 1 2 91 16 50373567 50379263 TGACAATGGGTACCACTGG 59 50373494 50373515 CATCGATAACCTCGTAATTGGG 59 NA Rattus norvegicus 81 Fat1 ENSRNOG00000030954 ENSRNOT00000081023 2 1 2 82 16 50379268 50379286 TCCTTCCAGTCAGAGTCCT 59 50373562 50374550 GTATCCCAGTGGTACCCTC 59 NA Rattus norvegicus 81 Tmem30a ENSRNOG00000010895 ENSRNOT00000085725 1 1 2 80 8 87245464 87245482 TCATCTTCATTCCCATCGG 57 87233007 87245423 CTGTTCCAGTGTAATCAATCTC 57 NA Rattus norvegicus 81 Gale ENSRNOG00000009712 ENSRNOT00000013322,ENSRNOT00000084085 1 2 2 80 5 154312108 154312228 TTCCATTCGTGGAGAAGACTC 60 154312270 154312288 TCCTCAAACTCCACAGAGC 59 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721 1 3 8 85 20 4364127 4364248 CAATGTCCCTAATAAGGTGGG 58 4364295 4364313 GAGGTTTCCCATCCAAGTG 58 NA Rattus norvegicus 81 Gstm6l ENSRNOG00000060939 ENSRNOT00000080228,ENSRNOT00000077563 2 2 2 80 2 210700543 210700561 AAGCACCGTATGTTTGAGC 59 210698778 210700500 CTCAAGGGTCTCAAATCGAG 58 NA Rattus norvegicus 81 Fgl1 ENSRNOG00000010714 ENSRNOT00000014248 2 1 3 91 16 54184312 54184330 AATGAAGTTCAGCACACGG 59 54184385 54187893 TGACACCTGTTAACCACCA 59 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468 3 2 8 86 20 4387144 4387162 AAGAACTTCCTTCGTGTGG 58 4382463 4387095 ACCAAAGAAGCTAGATTGCC 58 NA Rattus norvegicus 81 RGD1560789 ENSRNOG00000020641 ENSRNOT00000035386 2 1 1 78 8 43534538 43534557 CTTCCTCTTCAGGCCTTAGG 60 43534447 43534465 CCTTAACCAGGTGACCCAG 60 NA DesignNoJunction Rattus norvegicus 81 Fgfr1 ENSRNOG00000016050 ENSRNOT00000029284 3 1 2 80 16 71281038 71282793 TCAATGTCTCAGATGCACTG 58 71280977 71280997 TGTCTGTCTCTTTCTCCTCTG 59 NA Rattus norvegicus 81 Parp8 ENSRNOG00000010824 ENSRNOT00000073847 1 1 2 80 2 49128471 49128491 CAAGTCGCACAGGATTTGG 60 49128409 49128429 GTTTGTGCGATTTAATGGTGG 59 NA Rattus norvegicus 81 Snrk ENSRNOG00000004050 ENSRNOT00000079273,ENSRNOT00000005422 3 2 2 81 8 130768294 130768313 TGTGGATCTCTTGCGTACTC 60 130768355 130792992 CCAGGCTCCATATGTCTACTG 60 NA Rattus norvegicus 81 LOC100911217 ENSRNOG00000050625 ENSRNOT00000050465 2 1 1 65 3 153951985 153952009 GTCTGGTTACACTTCTTACTTAGTC 59 153949293 153949313 CCAGTTGAAGCATAAATCCGA 59 NA DesignNoJunction Rattus norvegicus 81 B4galt5 ENSRNOG00000008283 ENSRNOT00000064849 3 1 2 131 3 164048716 164048737 ATTCATGAGCTCTTCTCCAGAG 60 164041132 164047818 CAGACACAGGAAGGAGTCG 60 NA Rattus norvegicus 81 Fyco1 ENSRNOG00000006336 ENSRNOT00000008630,ENSRNOT00000087799 3 2 2 80 8 132860183 132860202 GAAGACACTGAAGACATGCC 59 132852087 132860144 GGGTAATTTGATCATCAGCTCTC 59 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000048985 2 1 8 151 20 4483902 4483920 CTACCAGCTAGCAGATGGA 58 4484149 4484346 AACAGGGAGTTATCCTGGG 58 NA Rattus norvegicus 81 Ccl28 ENSRNOG00000059640 ENSRNOT00000084486 2 1 2 138 2 52379445 52397425 AAGCCATACTTCCCATAGC 57 52397527 52402878 ACATGAAGGATGACAGCAG 58 NA Rattus norvegicus 81 Pgm3 ENSRNOG00000009515 ENSRNOT00000084694 3 1 2 82 8 94225895 94226580 ACCTCACAAGAAAGTGCAG 58 94225831 94225849 GGTCTTTCTCCAATGCCTC 58 NA Rattus norvegicus 81 Sec63 ENSRNOG00000000314 ENSRNOT00000087718 2 1 2 94 20 47557150 47557168 TGGTGGCTTTACATTGCAG 59 47557224 47558617 TTCAGCTCTACCTCTTCTGTG 59 NA Rattus norvegicus 81 Defa9 ENSRNOG00000046453 ENSRNOT00000039969 3 1 1 86 16 75465836 75465854 TCTGTCTCCTTTGAAGGCC 59 75466489 75466507 GAAACTTCTGCAATGGCAC 58 NA DesignNoJunction Rattus norvegicus 81 AC111257.1 ENSRNOG00000046973 ENSRNOT00000080832,ENSRNOT00000057761 1 2 2 80 16 81046509 81046530 GAATTTGGCGTCTTCTTTACTC 58 81046568 81054938 GGATATTCTCCACACCTTTCTC 58 NA Rattus norvegicus 81 Rab22a ENSRNOG00000005762 ENSRNOT00000079113 3 1 2 80 3 171774089 171780656 GACAAGAACGACTGCTATCG 59 171780697 171780717 TCAAAGTTGAGAACGTCTCCT 59 NA Rattus norvegicus 81 Snx30 ENSRNOG00000017132 ENSRNOT00000059419 1 1 2 98 5 77151858 77151876 GATATGGAGAGGTGGCAGG 59 77151933 77156271 CATGAGGCACTTCTCATAATACTG 60 NA Rattus norvegicus 81 Tdrp ENSRNOG00000027245 ENSRNOT00000036383,ENSRNOT00000082049 3 2 2 92 16 80751528 80751549 TTGGAAAGAAGCAACATCTCTG 59 80751600 80753103 CGTACGTTAGTTCCTTTGGAC 59 NA Rattus norvegicus 81 Casp9 ENSRNOG00000012944 ENSRNOT00000088523 2 1 4 149 5 160361409 160361428 GTACTCCAGGGAAGATCGAG 59 160363067 160372964 CTGTCTGCATGGGAAAGTG 59 NA Rattus norvegicus 81 Capzb ENSRNOG00000007330 ENSRNOT00000083577 2 1 2 80 5 157665475 157690582 GTCTGAAATGAACTCTAGCGA 58 157690624 157690642 TTCTCAATCTGCTGTGGAG 57 NA Rattus norvegicus 81 Ghrh ENSRNOG00000007782 ENSRNOT00000082145,ENSRNOT00000010443 1 2 3 82 3 153451935 153451953 AAAGATCCAGGTTCAACCG 58 153449252 153451889 GAATCCCTGCAAGATGCTC 59 NA Rattus norvegicus 81 Ghrh ENSRNOG00000007782 ENSRNOT00000082145,ENSRNOT00000010443 2 2 3 83 3 153451935 153451954 CAAAGATCCAGGTTCAACCG 59 153449252 153451889 GAATCCCTGCAAGATGCTC 59 NA Rattus norvegicus 81 Wfdc2 ENSRNOG00000014739 ENSRNOT00000019804,ENSRNOT00000039664 3 2 2 117 3 161021667 161024020 CCCAAATTCTGAGCTTCAGC 60 161024100 161024118 CGAAATGCAAAGGCCAGAG 60 NA InUTR Rattus norvegicus 81 Slc38a11 ENSRNOG00000004966 ENSRNOT00000058962 1 1 3 80 3 51404684 51407816 TAGCAAAGCTTGGAAAGATCTC 59 51404625 51404646 AAATGGTTCTTGTCACTACCAC 59 NA Rattus norvegicus 81 Tubgcp3 ENSRNOG00000017085 ENSRNOT00000068416 3 1 2 93 16 82217489 82220075 CCTAATGGATCTGCTAAAGTCTC 59 82220128 82224267 TGAACACAGTGGCAATTGG 59 NA Rattus norvegicus 81 AY172581.14 ENSRNOG00000032112 ENSRNOT00000049156 1 1 1 60 MT 2679 2698 GCCAGGTAATTGCGTAAGAC 59 2716 2739 TATTAGGGAGAGGATTTGAACCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013586.1 ENSRNOG00000036420 ENSRNOT00000054532 1 1 1 60 2 245137043 245137066 AATAGAAGGTAGAAAGTCTCTGGG 60 245137085 245137103 GTGAGCCTAGCCTTTAACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040624.1 ENSRNOG00000058183 ENSRNOT00000082858 1 1 1 60 X 106607189 106607207 CCATCGGCATGTTCTTCAC 59 106607147 106607166 GTGTACTTGGTAGAGGTGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044408.1 ENSRNOG00000051805 ENSRNOT00000084490 3 1 1 110 20 4833321 4833341 TCTGTGTACTCCTGTGTACTC 59 4999954 4999972 TTAGCTGTGAGGAGCACTG 59 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000055509 ENSRNOT00000082394 1 1 1 60 2 188168311 188168331 CTGTGATTTCTCCAAACTCGG 59 188168352 188168371 AAGCAGTCCTTCATTACCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051920 ENSRNOT00000077081 3 1 1 67 2 198528060 198528078 TTATCCATTGCACTCCGGA 59 198528109 198528127 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010878.1 ENSRNOG00000051664 ENSRNOT00000086522 2 1 1 80 2 154501756 154501779 GAGATTTCACCTCACATGCG 59 154501821 154501840 TCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000057918 ENSRNOT00000087318 1 1 1 60 2 79604301 79604319 GCATCAGTAGGTAGCAGAG 57 79604259 79604277 CACAGGTCAGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070060.1 ENSRNOG00000052582 ENSRNOT00000080059 3 1 1 93 8 47036267 47036575 AAAGCAAAGACCAAGCTGC 60 47036631 47036650 AGATGTAGATCTTCTGGCGG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000052164 ENSRNOT00000088904 1 1 1 60 16 20933173 20933194 ATACAGAGAAGATTAGCATGGC 58 20933134 20933153 GGAACGCTTCACAAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057457 ENSRNOT00000090196 3 1 1 60 8 71502930 71502950 AGATGCCATGATATTGAAGGG 58 71502890 71502912 CATCCAGAGTGCTATGAATAAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059677 ENSRNOT00000078397 2 1 1 60 8 75827639 75827658 GAGCACTCGTAAGCATATGG 59 75827678 75827699 TTAGAAGCACCTACCTAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000060794 ENSRNOT00000077752 3 1 1 60 5 35315051 35315070 CAGCAAGGGTTTGTACAGAG 59 35315092 35315111 ACCCAATCTCAGGTCTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056680 ENSRNOT00000083348 3 1 1 60 11 47319488 47319507 TGACCCAGAGGAGATTAGTG 58 47319528 47319548 AACACTTCATGAGTTCACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060895 ENSRNOT00000082804 3 1 1 61 11 19700052 19700070 TTGGAACATCTTGCAGCAC 59 19700009 19700029 AGGCCATGCTAATCTACTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000054528 ENSRNOT00000091045 3 1 1 60 5 173404867 173404889 GTGTTGCTCTTATATCAGTCAGG 59 173404829 173404850 CAAGCTAGGATGAACAAAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058814 ENSRNOT00000087256 2 1 1 60 2 109632954 109632974 GATCGCTTGACAAGTTATGTG 58 109632995 109633014 GAAAGTTTCACAGGGAGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052872 ENSRNOT00000091971 2 1 1 60 11 5021856 5021878 CATGTCACATGTACATCAGTAGG 59 5021818 5021838 CACTGAGCATAGACATAGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000052850 ENSRNOT00000085603 2 1 1 69 8 23323445 23323463 GCCGATTAAGTCCCTTTCC 58 23323394 23323412 ATTACCAAGGAGGCTGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135294.1 ENSRNOG00000053696 ENSRNOT00000079637 2 1 1 60 3 101047272 101047290 TATTGTGAAGCCCTAGGCA 58 101047230 101047250 ACATTCCTGAAGGAGGAAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026517.1 ENSRNOG00000049013 ENSRNOT00000072236 1 1 1 70 16 80549455 80549473 ATGAGACCCAGCTGTAAGG 59 80549403 80549421 ATGGTACCACCCACAATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057551 ENSRNOT00000078181 2 1 1 60 8 32366179 32366198 ACAGAATCACAGCCAATGAG 58 32366219 32366239 AGTCGCACTTTGAATTAGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059078 ENSRNOT00000087164 3 1 1 60 2 84864743 84864764 TGCTGTGTCATATGTACATCAG 58 84864704 84864724 ACTGAGCATTGACATAGTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000059388 ENSRNOT00000079685 3 1 1 60 8 132197062 132197082 ACGTCTTTCTATGACACTCTG 58 132197022 132197042 TGAGCTGACCATTACATTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052262 ENSRNOT00000080975 1 1 1 60 16 41928701 41928720 CGGAAATTGGCAGAGATGAG 59 41928660 41928684 GATGTTTATAGGGTAGAACACTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000055748 ENSRNOT00000086759 1 1 1 60 16 19382269 19382289 ACACTACAATGGGAGAATTGG 58 19382229 19382252 CAATTAGCAATAGTCACACCTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000159.1 ENSRNOG00000051899 ENSRNOT00000085174 3 1 1 60 1 1726461 1726481 CTAGTGCCATCCTGATGAGAG 60 1726421 1726440 GATCTGACACTTGTAGGCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053499 ENSRNOT00000088013 2 1 1 60 2 50578093 50578111 GTGCATCAGAAGGTAGCAG 58 50578132 50578153 TCTGATTCTCATAGGAAACAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057055 ENSRNOT00000081617 1 1 1 60 8 85571952 85571970 AAATCGGAACGACACAGAG 58 85571910 85571928 TCATGAATTTGCGTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058394 ENSRNOT00000086778 3 1 1 60 16 52549549 52549569 ACTGATGTTGGACGAATACAG 58 52549509 52549528 AACTGTGTACCATCCTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045798 ENSRNOT00000073711 2 1 1 66 16 5069326 5069345 TCTACAGCCACATTACCCTG 59 5069279 5069297 GGCCTAACCAAGCTTAGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128059.2 ENSRNOG00000056737 ENSRNOT00000080388 1 1 1 60 8 116880149 116880167 AATCTCTGGAGTCAGAGGC 59 116880107 116880126 CTGACACTCACCGTTATACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051475 ENSRNOT00000085518 1 1 1 60 16 76412449 76412467 GTCTGCTGTGTCTCAAGTG 59 76412488 76412509 GAGGTCAAACATAGTCTGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051475 ENSRNOT00000085518 3 1 1 61 16 76412449 76412467 GTCTGCTGTGTCTCAAGTG 59 76412490 76412510 AGAGGTCAAACATAGTCTGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058511 ENSRNOT00000085656 2 1 1 60 16 53889744 53889762 CCCAGCCATGATGATTTGC 60 53889702 53889724 TCTCTGTAGAGACTGTCAAACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000060263 ENSRNOT00000081805 2 1 1 60 16 2193861 2193885 GGTCATTTATACTGTAGGAAGAGGA 60 2193903 2193921 AGCAGACTTTCCAAACACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000058708 ENSRNOT00000078805 2 1 1 60 16 24545285 24545303 ACATGTGTCACTAGGTGGC 60 24545327 24545345 CAGGTCAGAACACTGATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000058756 ENSRNOT00000079881 2 1 1 60 17 20263018 20263039 CTTTCCAACTGGATCATAGGAG 58 20263057 20263078 TGAGACTACATTATTGTGAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000059941 ENSRNOT00000088216 2 1 1 89 17 47856780 47856798 CTCAGAAGCTAAGCAGGGT 59 47856709 47856730 AGACAACTAGCAGAACTATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056492 ENSRNOT00000090969 2 1 1 61 X 101117188 101117211 CACATGTGCATTAGTAGGTATCAG 60 101117150 101117171 AGTCTGAACACTGAATGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072362.1 ENSRNOG00000052980 ENSRNOT00000071557 3 1 1 82 14 2533727 2534554 GGGACCACAGAAATAGCAG 58 2534600 2534618 TTTCTGTTGCTTGGGTTCC 59 Novel Rattus norvegicus 81 SNORA75 ENSRNOG00000052748 ENSRNOT00000080697 3 1 1 60 9 93369833 93369854 GAGAAAGTTCACAGAACTAGCA 59 93369794 93369814 AACAGCCAAATAGATCTCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055514 ENSRNOT00000088718 3 1 1 60 X 152074550 152074571 GCATTGCAGTTACAGAGAAGAG 60 152074511 152074531 TGGTCATAGGTCAGATCACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002835.1 ENSRNOG00000031073 ENSRNOT00000050523 3 1 1 116 1 86653683 86653709 CTACACAAAGGAATAGCAATAGGAC 60 86653783 86653801 AAACTTCAGGGAACACCCA 59 Novel Rattus norvegicus 81 AABR07012592.1 ENSRNOG00000037223 ENSRNOT00000056241 3 1 1 104 2 198682671 198682692 ATTTCATGCCTCTTAGCCAG 58 198682585 198682604 CATCCTGAAGTATCCTTGGG 58 Novel Rattus norvegicus 81 U5 ENSRNOG00000052829 ENSRNOT00000083092 2 1 1 66 6 11304918 11304937 TGGTTCCTCTTCAGTTTGTG 58 11304966 11304984 GAGTGGATGCTTTCCATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD33 ENSRNOG00000053764 ENSRNOT00000087746 1 1 1 60 1 101121699 101121717 TGTCTCCCACTCATGTTCG 59 101121657 101121677 CAGATGGTAGTGCATGTAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035541.3 ENSRNOG00000061371 ENSRNOT00000089349 2 1 1 60 12 19254307 19254325 ATGCGCTATCGAAAGTGTG 59 19254265 19254284 GTGGAGCTGTTAGTATAGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054240 ENSRNOT00000077904 1 1 1 60 X 33734106 33734124 TGCCAAGGTCATTTCACTG 58 33734064 33734082 GAGTTTCGAGGGAAATGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA31 ENSRNOG00000056042 ENSRNOT00000080428 3 1 1 60 X 85123307 85123326 AAAGGAAACTCTTCCTGAGC 58 85123346 85123367 CACCACAATTCAATCTGAACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000056696 ENSRNOT00000086666 3 1 1 60 6 133822236 133822255 ACCAATGATGAGATCTGGTG 57 133822276 133822296 ATATCTGTTCACAAGGCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD88 ENSRNOG00000055223 ENSRNOT00000086233 2 1 1 70 1 41383977 41383995 ATAATGTCCAGCACAGGGT 59 41383925 41383946 TTCTGGAATCAAAGTTCTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059951 ENSRNOT00000087687 1 1 1 60 2 164737339 164737357 GTGTCCATGTCAGTAGGTG 58 164737297 164737316 GTTGACAGGTCAGAACAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070085.1 ENSRNOG00000052246 ENSRNOT00000092188 1 1 1 60 8 50526684 50526702 GGCTTTCTCACCAAGTGTC 59 50526642 50526663 TACCCTGATCGAGTATCATACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD45 ENSRNOG00000056420 ENSRNOT00000084307 3 1 1 65 2 260115728 260115748 GATGAGCTGGCATGTATTCTG 59 260115683 260115707 CAGAGTAATTCTAGAGCTAAAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054285 ENSRNOT00000081186 1 1 1 60 9 64150390 64150411 CACTTGGAAAGGGAGATAAGAG 58 64150431 64150450 CACTGAATAGGTCTCACCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC119015.2 ENSRNOG00000059270 ENSRNOT00000084836 1 1 1 80 10 76363872 76363893 CCTTAACCGTAAGCATTTCTGG 60 76363932 76363955 CTGCTCAATTCTGTGAGAGTG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000057873 ENSRNOT00000082942 1 1 1 66 9 41623003 41623021 AATGCTCCTAGAGGCACTG 59 41623051 41623069 TAGACTCTGCCACCTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA11 ENSRNOG00000053998 ENSRNOT00000090733 3 1 1 61 X 63668873 63668892 AACTGACTCCTCTGTTTGCA 60 63668831 63668849 GTGCTTCTTATCACAGCGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052900 ENSRNOT00000082512 1 1 1 67 16 87696667 87696687 GTAGCTATTGTGACACATGTG 57 87696620 87696640 AGACCGAACATAGACATAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000059895 ENSRNOT00000082168 1 1 1 71 16 22497869 22497887 AAACCAGTCCCTTTCTGCA 60 22497816 22497834 GAATGCACTCCCAAGTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126701.1 ENSRNOG00000013739 ENSRNOT00000071448 2 1 1 61 1 149718192 149718212 GTTCAGATGACACTGACTTCC 59 149718234 149718254 TTGAAAGTATGCACACTTGC 57 Novel DesignNoJunction Rattus norvegicus 81 SNORA35 ENSRNOG00000057599 ENSRNOT00000086779 1 1 1 72 X 118116617 118116636 CTTTCTCTTGACCAACTGGG 59 118116671 118116689 CACAGTGTGACTCTCCCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041822 ENSRNOT00000063575 1 1 1 60 X 51691484 51691505 TAGCCATACCAAATTAACACCC 59 51691523 51691544 GCCTAACCATGCTTAACTTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004812.2 ENSRNOG00000052460 ENSRNOT00000086184 1 1 1 60 1 158913079 158913099 CAGCATTTGCTGTCACCTG 60 158913037 158913056 GAGATTTCACCTCACACCAG 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000055785 ENSRNOT00000089452 2 1 1 60 X 51229579 51229599 GTGATTCAACTGATCTGGCTG 59 51229539 51229557 CACATGAACCAGTGAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058149 ENSRNOT00000090194 1 1 1 60 6 117111708 117111726 TCCAGATATGCTGAACCCT 58 117111750 117111768 AGTGTGAACACAGTCCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0525.2 ENSRNOG00000051391 ENSRNOT00000080722 3 1 2 81 5 47834593 47834613 ACACTTTGAGACTTTCAGCAG 59 47834654 47844382 TGGTCAGATTGACTTATCGTG 58 Novel Rattus norvegicus 81 AABR07030524.1 ENSRNOG00000028427 ENSRNOT00000033244 2 1 1 60 10 91753197 91753217 TGACTCTTTCTACCTGCAGTC 60 91753239 91753257 GAGTTCCTCATCTAGGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044784 ENSRNOT00000070051 3 1 1 62 6 127776516 127776535 GAGCATGACCATCTCTTCTG 58 127776557 127776578 ATCCTAATACTAACTAGGCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056016 ENSRNOT00000086857 1 1 1 60 3 123417346 123417366 GAGATCTCATGATCGGGAAGG 60 123417383 123417406 CATCTAGACTACAATGGATGAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000058802 ENSRNOT00000079384 3 1 1 61 3 10355867 10355885 AGCAGGCTAACACAGAAGG 60 10355910 10355928 AGGAGTGAAGCCTCTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061721 ENSRNOT00000080731 2 1 1 61 7 12102970 12102989 AACGACACAGAAGATTAGCA 57 12102928 12102946 GAACGCCTCATGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073014.1 ENSRNOG00000005415 ENSRNOT00000007183 3 1 1 113 4 72523390 72523408 GCACTGTCCCTAAGATGCT 60 72523485 72523507 TCATACACTCCGTCACAGC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058493 ENSRNOT00000088107 2 1 1 60 6 54346883 54346901 TCACCTGTGCATCAGTAGG 59 54346924 54346943 TCAGAACACTGAGCAGAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035832.1 ENSRNOG00000055795 ENSRNOT00000084789 1 1 1 80 12 24091226 24091244 CTACTTCACCGTTTCCACC 58 24091287 24091337 GTGGGTGTGATATAGTCTGC 58 Novel Rattus norvegicus 81 SNORA7 ENSRNOG00000056323 ENSRNOT00000079576 3 1 1 60 6 145777896 145777914 AGGTACCCATTCCATTCCC 59 145777854 145777873 ATGTTGCAGAGTGTCTTCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA57 ENSRNOG00000054533 ENSRNOT00000086318 2 1 1 60 1 225085011 225085030 CTCTCGGTGTTATGTCTTCG 58 225084970 225084988 GCGTCTGAGGATAGAACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC131360.2 ENSRNOG00000039472 ENSRNOT00000060488 2 1 1 60 18 30556600 30556619 TCATCTCCATCAATGCTGAC 58 30556642 30556660 GCTTCGTAGTCTAATGCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA8 ENSRNOG00000059339 ENSRNOT00000089038 1 1 1 68 8 13869834 13869852 AGTTCTTTCCTGTTGGGTG 58 13869884 13869902 AAGAAACCAACGATGCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003302.1 ENSRNOG00000058668 ENSRNOT00000090142 2 1 1 123 1 104052103 104052122 AGGAAAGCTACAGGGATAGG 58 104051999 104052017 TTGTTAGCACAGGACAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU2_19 ENSRNOG00000057204 ENSRNOT00000088422 2 1 1 60 8 13878034 13878054 CAAATCTGAGCATCAGAAGGC 60 13877994 13878016 TCTCAGAACTATGGAGATCATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050399.2 ENSRNOG00000059160 ENSRNOT00000081495 1 1 1 100 5 163879669 163898846 ACTCTTCAGGGTTTCTTAACCT 59 163898907 163898925 ACATCCATGTACAGTGCCC 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000054337 ENSRNOT00000078164 1 1 1 60 10 53921314 53921333 TGCTCAGTCAAAGAAGACAG 58 53921353 53921374 TATACCCTTGGCAGAAGATCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052280 ENSRNOT00000090563 3 1 1 65 9 28372338 28372357 AATATGTACTGACGGCTGAC 58 28372292 28372312 CCACTACGACAAGTTATGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000056414 ENSRNOT00000084714 3 1 1 87 9 19961953 19961971 CCGTGGCAGTATTGTAACC 59 19961884 19961904 TTTCTTACCTCATTTGGAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067600.1 ENSRNOG00000028330 ENSRNOT00000016874 2 1 1 83 9 53617444 53617472 GCACTCTGAGGAAGATTATATTGAG 59 53617385 53617406 GACCAATCCCATATCCAATCTG 59 Novel Rattus norvegicus 81 AABR07067600.1 ENSRNOG00000028330 ENSRNOT00000016874 3 1 1 87 9 53617444 53617472 GCACTCTGAGGAAGATTATATTGAG 59 53617381 53617401 ACTTGACCAATCCCATATCCA 59 Novel Rattus norvegicus 81 AC120246.2 ENSRNOG00000054344 ENSRNOT00000088175 2 1 1 144 19 25775336 25775354 GAAGCTGCAATGGAAGCAG 60 25775163 25775182 CTTCTTGCTTGGTACCAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA61 ENSRNOG00000052616 ENSRNOT00000091426 2 1 1 62 8 58229764 58229782 CTTCCCATGGGATCTCCAC 60 58229806 58229826 CAGCTTCAGTGTACTCTTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058958 ENSRNOT00000091138 3 1 1 60 10 31643321 31643344 ACGATACAGAGAAGATTAGAGTGG 60 31643284 31643303 AGGCTTCATGAATTTGCGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053344 ENSRNOT00000088020 1 1 1 60 9 100115224 100115244 AAGATTAGCATGGTCCCTGAG 60 100115184 100115203 GTTTCAATGGGATGCTTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051873 ENSRNOT00000083457 2 1 1 60 2 206686724 206686742 GCTCTGTCTATGCTCAGTG 58 206686764 206686784 GCTCTGAGTGCTAAAGTAGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070816.1 ENSRNOG00000054182 ENSRNOT00000086145 2 1 2 92 8 85605736 85605755 CTGCACATTTACGGATTGGA 59 85605809 85620059 GGCTCGATTTCGTTTGATCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07033943.1 ENSRNOG00000001675 ENSRNOT00000002277 1 1 1 63 11 45647554 45647572 GAAGGACTCTCACCTCCAC 59 45647600 45647618 TGAAGTGCATGAGTCAGCA 60 Novel DesignNoJunction Rattus norvegicus 81 SNORD113 ENSRNOG00000057088 ENSRNOT00000079443 3 1 1 60 6 133825650 133825669 ACCAATGATGAGATCTGGTG 57 133825690 133825710 ATATCTGTTCACAAGGCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027752.3 ENSRNOG00000057700 ENSRNOT00000089758 3 1 1 73 17 43779502 43779520 GAGACAACAAGAAGACGCG 59 43779558 43779576 CTTGTTGAGCTCCTCATCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07068355.1 ENSRNOG00000051904 ENSRNOT00000082949 2 1 1 95 9 101005210 101005228 ACTTAGCCCTGATGACTCC 59 101005394 101005412 TCCAGTACACTCAGAACGC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA51 ENSRNOG00000055932 ENSRNOT00000085715 3 1 1 60 15 4063621 4063639 ACATCCTACACCTACCCTG 58 4063579 4063597 CACAATACAGACCAGGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054135 ENSRNOT00000088547 3 1 1 60 15 24285162 24285181 ACTGATGATCACAGAGGTGC 60 24285202 24285222 GCATATCTGGAATCCAATGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097700.1 ENSRNOG00000057454 ENSRNOT00000077145 3 1 1 60 8 53361450 53361470 TGGACTTCTCCTCATCTTCTC 59 53361410 53361428 CGTCCAAGGAGATGATCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC132671.1 ENSRNOG00000055680 ENSRNOT00000089745 1 1 1 80 8 36719013 36720581 CCTTCCTAGATGTCGTCTATGG 60 36718954 36718973 CCCAGATCCCATCTTCAGAG 59 Novel Rattus norvegicus 81 AABR07007092.1 ENSRNOG00000034090 ENSRNOT00000048196 2 1 1 60 1 280753917 280753935 ATCTTTAAGCTGGGCCTGG 60 280753875 280753893 GACATTGGTGGATGAGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_3_0730.2 ENSRNOG00000060951 ENSRNOT00000086267 2 1 1 80 3 66404640 66436586 GGCTTTCTAAAGGTGGTCCT 60 66403371 66403389 GCTGCCTACAAGGTAGAGG 60 Novel Rattus norvegicus 81 AABR07043247.1 ENSRNOG00000053972 ENSRNOT00000085796 2 1 1 81 19 26761157 26763068 GCTCAACAACGTAATGAAGTC 58 26763108 26763129 AAGGCTGAATAGTAAAGGTCTG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000059527 ENSRNOT00000090012 1 1 1 60 9 16072223 16072244 GGTACAGAGAAGATTAGCATGG 59 16072184 16072203 GAACGCTTTACAAATTTGCG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061820 ENSRNOT00000090296 1 1 1 60 9 105888623 105888641 TATGTCACATGGGCATCAG 57 105888581 105888600 AGGTCAGAGGATAGACATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041892 ENSRNOT00000063645 1 1 1 60 4 120565979 120565998 CATCTGATCCTGTCTGATCC 57 120565938 120565956 CAGGCCAAGTACTAACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060441 ENSRNOT00000085071 2 1 1 67 2 198623816 198623834 CTTATCCATTGCACTCCGG 58 198623865 198623883 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058423.2 ENSRNOG00000059053 ENSRNOT00000090876 1 1 1 81 7 116003786 116003805 ATTCGGTCTTCCCTCTCAC 59 116003723 116003743 AGATTTCCTGAGGAAGGAGAG 59 Novel Rattus norvegicus 81 AABR07034098.1 ENSRNOG00000052255 ENSRNOT00000089097 2 1 1 84 11 52408638 52408661 GATATACCTTCTTCGCTCCTC 58 52408574 52408592 TTTCTGTACCTGTTGAGGC 57 Novel Rattus norvegicus 81 AABR07001910.1 ENSRNOG00000051570 ENSRNOT00000078809 2 1 1 60 1 61872305 61872323 AGTGAATGTGCCAAATGCT 58 61872263 61872281 TGTGAACTGTCTGATGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064061.1 ENSRNOG00000045967 ENSRNOT00000072431 2 1 1 60 6 62797542 62797561 AGGTGGTAGAGGACATTGAG 59 62797501 62797521 TCATCCTGTTTAAGCCAAGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC139873.2 ENSRNOG00000053098 ENSRNOT00000078792 2 1 1 80 3 73743767 73743790 ATCATCTATCTGATCACTGTGGG 60 73743709 73743730 GTACATGGGTGTTTGTAACCTC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059221 ENSRNOT00000083903 3 1 1 60 2 167059680 167059700 CTAAAGGGATTGCAAAGGTGG 60 167059640 167059661 TCTCTTCTCTGCTACCTATGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036920.1 ENSRNOG00000046063 ENSRNOT00000072290 2 1 1 60 X 7050823 7050843 GAACCTTGTTGCTGAAATCCT 59 7050864 7050883 TGCCTCATCCTTAACTTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058575 ENSRNOT00000081978 3 1 1 60 2 181089731 181089750 GCGCGATTATTGCTAATTGG 58 181089690 181089710 GAGATTAGCACAGTTCATCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053697 ENSRNOT00000078649 1 1 1 60 17 48432334 48432352 GAGAAGATTAGCATGGCCC 58 48432376 48432394 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054598 ENSRNOT00000087639 2 1 1 60 2 260837332 260837351 CCCAAATAGAGGAGGACCTG 59 260837291 260837309 TGACAGCTTGTTTGGAGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012044.2 ENSRNOG00000056501 ENSRNOT00000077439 1 1 1 60 2 183573367 183573385 GGTTGTAAGCCACCATGTG 59 183573325 183573345 CAGTTAAGAGCACTTCCAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057783 ENSRNOT00000078669 3 1 1 60 2 48263860 48263882 TCTAGCTGTAATATCTGTCACCC 59 48263902 48263920 AATCGCCAGATCATCTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058700 ENSRNOT00000080764 2 1 1 87 2 259883623 259883642 ATCTCTAGAAGCACTGCAGG 59 259883687 259883710 CACTGAGTATGGATATAGCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058431 ENSRNOT00000077881 1 1 1 60 X 96801691 96801709 GCCACCTACAGGTAAAGCA 60 96801731 96801751 TTCTATGCCACCTACTGACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051769 ENSRNOT00000079188 3 1 1 60 X 96455358 96455376 TGCAGTTATGGCTACTGTG 58 96455400 96455418 AGACAAGAGCCTCTTTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053464 ENSRNOT00000083738 3 1 1 60 1 201879170 201879190 TCACATGTGCATCAATAGGTG 59 201879211 201879230 GTCAGAACACAAGGGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027809.2 ENSRNOG00000054700 ENSRNOT00000085743 3 1 1 81 17 44538582 44538600 TGGAAGAGTGGTCTTGGAG 59 44533638 44533658 GCCTTATCATCATGCAAAGC 58 Novel Rattus norvegicus 81 SCARNA15 ENSRNOG00000055316 ENSRNOT00000087677 3 1 1 60 1 143360163 143360186 TTGGAGACTAAGACAATAGAGTCC 60 143360205 143360223 ATGTAGGAGGCTAAAGGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA18 ENSRNOG00000058734 ENSRNOT00000088369 3 1 1 61 3 151043620 151043639 CCTTGCAGAGTAACTCTGTG 58 151043578 151043602 CTTCTGACAAACCTAGACATAATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056502 ENSRNOT00000079898 3 1 1 61 14 11337643 11337661 GAGAAGATTAGCATGGCCC 58 11337600 11337618 AAATATGGAACGCGTCACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_14_0488.1 ENSRNOG00000051263 ENSRNOT00000077062 2 1 1 80 14 48633991 48634010 CATTGTGGTGAAAGTTGTCC 58 48630326 48633950 AGTTGGAGCACTATAAACCTC 58 Novel Rattus norvegicus 81 AABR07061462.1 ENSRNOG00000056316 ENSRNOT00000083740 1 1 1 81 4 126509353 126509374 CTCATTATCATGGGTTTCCTCC 59 126509415 126509436 TGAGACCAGAAACCAGAAGG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000061722 ENSRNOT00000082292 2 1 1 60 4 175979626 175979644 TGAGGGTCATAGGTGAAGG 58 175979584 175979608 GTGTTTGGATATTCTAACAGGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066624.1 ENSRNOG00000045990 ENSRNOT00000072423 2 1 1 90 9 12001482 12001505 AGTCTGCAAGTGACCTAGAG 59 12001411 12001429 TCTTCAGCCTTGATGGCTC 60 Novel Rattus norvegicus 81 AABR07061871.1 ENSRNOG00000030647 ENSRNOT00000052259 3 1 1 60 4 150199656 150199677 TCAGATGAATGATGGATCTCAG 58 150199696 150199716 GATTTCTGAATCATCCGACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060364.1 ENSRNOG00000061225 ENSRNOT00000090525 3 1 1 60 4 69970941 69970959 AGAAGTTAGACCACAGGGA 57 69970897 69970916 TCTTTGTTTAGCTCTGAGCC 58 Novel DesignNoJunction Rattus norvegicus 81 AC111319.3 ENSRNOG00000059489 ENSRNOT00000088343 1 1 1 103 9 71296253 71296272 TGTATTACTCCAGCACTCAC 57 71296342 71296363 TCAAGTGACTGGTAACATACTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07015556.1 ENSRNOG00000047460 ENSRNOT00000075037 2 1 1 107 14 63307932 63307950 GACAGAGAAGGAGGGAAGG 59 63307843 63307862 TAATTCACATGCACATGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC106510.1 ENSRNOG00000036434 ENSRNOT00000054546 2 1 1 60 2 44897530 44897548 GGGTTAAGTAAGCAGCCAC 59 44897571 44897590 ATTAACAAGAAGACCCGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054510 ENSRNOT00000086615 3 1 1 66 10 63946019 63946038 CAGAGAAGATTAGCATGGCC 59 63945972 63945993 GAGCTATAGGAACAGTAGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000060481 ENSRNOT00000083805 1 1 1 60 1 116978573 116978594 CAACAGAAAGTCAAGAACAGGA 59 116978534 116978554 CTCAGCCTAATCCTATTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114363.1 ENSRNOG00000057545 ENSRNOT00000090574 3 1 1 84 3 8432154 8432175 ATCTCACTCCTGGAATACTGAC 59 8432090 8432109 GAACAGGGCTCCCTTAGTC 60 Novel Rattus norvegicus 81 SNORA36 ENSRNOG00000058610 ENSRNOT00000091228 3 1 1 60 2 101977084 101977104 AGTTCAGTTCATGGAAACCTC 58 101977126 101977144 AGCCAATTTCAATGACCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061226 ENSRNOT00000079052 2 1 1 61 2 93815207 93815225 GTGCTTTCTTCAGCAACAC 58 93815250 93815268 AGGCCATGTTACTGTTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC112093.1 ENSRNOG00000060743 ENSRNOT00000091860 2 1 1 60 1 216773923 216773943 GCTTCAGTAATAAAGGCCTCG 59 216773883 216773903 AGAGACACATAAAGGACCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC112093.1 ENSRNOG00000060743 ENSRNOT00000091860 3 1 1 60 1 216773924 216773945 TTGCTTCAGTAATAAAGGCCTC 59 216773885 216773904 AGACACATAAAGGACCCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000056479 ENSRNOT00000085127 2 1 1 60 10 110408880 110408899 AAGGGTAAAGGAAGTCTCCA 58 110408922 110408940 AGGATCCAAAGAGGAGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054350 ENSRNOT00000088882 3 1 1 60 2 166806861 166806880 TACATCTGTAGGTGGCAGAG 59 166806820 166806839 TTCACAGTCAGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041913 ENSRNOT00000063666 3 1 1 67 14 75478541 75478560 CTCATACCACCCTTAACACG 58 75478590 75478608 CTAACCAGGGACAACCCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC118794.1 ENSRNOG00000059865 ENSRNOT00000079215 3 1 1 80 16 2438259 2438278 CAGTGAAAGCCGTGTTAGTG 60 2438319 2438611 ATCGAAGAAGCAGTATGTCCT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055988 ENSRNOT00000082502 2 1 1 60 3 158727408 158727429 TGTCACATGAGCATAAGTAGGT 59 158727447 158727468 AGAACACAGAGTGTAGACATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1407.2 ENSRNOG00000055573 ENSRNOT00000082729 1 1 1 81 7 142890324 142890806 TGCGACTAAAGGAAGGGAG 59 142890261 142890279 TTGACCTGAGCATTCTGGG 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000058499 ENSRNOT00000090005 2 1 1 60 2 60002231 60002252 TGGCTACAACATCAATCATCTG 59 60002272 60002291 TAGCCAGTCAGATCAATGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001497.1 ENSRNOG00000018935 ENSRNOT00000025594 1 1 1 60 1 47587950 47587971 CACCATTTCTGAAATCAAGACC 58 47587866 47587885 TTCATCTTTCAGGGACTTCC 57 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000061470 ENSRNOT00000085919 3 1 1 60 2 185663514 185663532 GGAGGAAGCATGATCTCAG 57 185663553 185663574 TCTGAAGTGCAATGGATAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061802 ENSRNOT00000089067 3 1 1 60 1 244839416 244839435 TGTTCCCTTATTGATTGCCA 58 244839458 244839476 GAACATCCCTGTCTAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057608 ENSRNOT00000079396 1 1 1 60 17 90659471 90659489 GGATGACCTTCACATTGGA 57 90659429 90659450 AGCACAGCTATTCATATACCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057608 ENSRNOT00000079396 3 1 1 60 17 90659468 90659487 ATGACCTTCACATTGGAGGA 59 90659427 90659448 TGAGCACAGCTATTCATATACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010370.1 ENSRNOG00000054361 ENSRNOT00000086680 2 1 1 61 2 133290137 133290156 AAGAAGTTAGACCACAGGGA 58 133290180 133290200 TCTTTGTTTAGCTCTGAACCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07040430.1 ENSRNOG00000056486 ENSRNOT00000091859 3 1 1 62 X 100207597 100207615 CTACTACCACCAATGCCAG 58 100206262 100206849 TCTCGACAATCTTTCCTGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07050561.1 ENSRNOG00000057128 ENSRNOT00000087911 2 1 1 98 5 169899626 169899646 ATAAGCCTGCTTGTCTTGC 59 169899713 169899731 TTTCCCATCAGAGACCGTG 59 Novel Rattus norvegicus 81 AABR07016975.1 ENSRNOG00000053595 ENSRNOT00000077659 3 1 1 81 15 5652368 5652387 TTTGTGAACTGCAAGTTCCC 59 5652304 5652329 GATTTCTTGGGTCTTTCTGATAGG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000060691 ENSRNOT00000078391 3 1 1 61 14 44221184 44221207 GTACTAACACTGGAACATACAGAG 59 44221146 44221167 ATTGAATGTCATCCTTGCACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004949.1 ENSRNOG00000046444 ENSRNOT00000071554 1 1 1 69 1 171520071 171520090 CAGCTGTAAGGCAATTTCTC 57 171520021 171520039 CCCAGGGATAGTACCACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004949.1 ENSRNOG00000046444 ENSRNOT00000071554 3 1 1 75 1 171520078 171520096 GAGATCCAGCTGTAAGGCA 59 171520021 171520039 CCCAGGGATAGTACCACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000048387 ENSRNOT00000074592 1 1 1 60 17 53916382 53916402 CTGAACACATCCCATCTTGTC 59 53916422 53916442 AGTAATAACCAGGCTTGATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051807 ENSRNOT00000090392 1 1 1 74 12 695175 695193 TGAGGCTGCTATGTCACAC 60 695119 695137 GGCTACACCGAGTGTAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056917 ENSRNOT00000078229 2 1 1 60 2 219485064 219485082 GGGAGATGGCATGATATCG 58 219485022 219485042 TTGGAGCACATTGAGTAAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034833.1 ENSRNOG00000055204 ENSRNOT00000090447 1 1 1 66 12 53933 54665 TAAGTTCAGCTCCCAGAGG 58 53885 53903 AAGTCTCCCTGGGTAAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000051604 ENSRNOT00000079645 2 1 1 61 14 45212954 45212978 GATACAGATAAGATAAACATGGCCC 60 45212996 45213015 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059573 ENSRNOT00000088271 2 1 1 60 2 173210278 173210298 CCTATAGGCTATGCAAGTGTG 58 173210316 173210338 CTTTCTTCTGTACCTACTGTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034393.1 ENSRNOG00000052264 ENSRNOT00000089347 3 1 1 80 11 68060820 68060843 AGATTTCACCTCACATGCGA 60 68060759 68060779 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 AABR07059877.1 ENSRNOG00000039626 ENSRNOT00000060755 2 1 1 60 4 39727897 39727915 GCTCAAAGAAGTGGACTGG 59 39727855 39727874 TGTTGGAGAAGTGGCTAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047262.2 ENSRNOG00000060913 ENSRNOT00000082001 3 1 1 61 5 25773848 25773871 CAACAGATAGAGGCCTTATATCCA 60 25773894 25773914 CCTGTGGTCTAACTTCTTCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058899.1 ENSRNOG00000053802 ENSRNOT00000086780 2 1 1 89 7 142062871 142062889 GGTGCAGAACTGGTTTGAC 59 142062944 142062962 CCTTGAGTGTCCTCTCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07017197.1 ENSRNOG00000048492 ENSRNOT00000070931 2 1 1 114 15 17096230 17096250 TTGGACCAGAGAAACACCT 59 17096134 17096158 GTCTCCCTTTATATGTTACTTGACC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059173 ENSRNOT00000083106 3 1 1 61 1 186497739 186497757 GTGTCAGTAGGTGGCAGAG 60 186497696 186497715 GTTCACAGGTCAGAACACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA3 ENSRNOG00000055001 ENSRNOT00000089120 3 1 1 60 1 174133775 174133796 CTACTGACCTTATTCACTGGCT 60 174133816 174133835 TGTCACTAACCTGGTGACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD25 ENSRNOG00000059148 ENSRNOT00000082509 2 1 1 62 1 224921637 224921655 ATGCCCTATGATGAGGACC 59 224921677 224921699 CAGAGTTACTTATCCTCACAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045172 ENSRNOT00000070439 3 1 1 60 3 137613170 137613189 TGGAAATAAACAGGTTCGGG 58 137613207 137613230 CTCAGAGTGTACTTAATTTCTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062912.1 ENSRNOG00000040076 ENSRNOT00000061631 3 1 1 62 6 14350372 14350392 CAAACAATCCGAAACATAGCC 58 14350417 14350435 CTGCCTTTCTGGACAAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_X_0674.4 ENSRNOG00000051119 ENSRNOT00000076605 3 1 1 80 X 66528915 66528935 AATAGCTGAATTGAACCAGCC 59 66528977 66534947 CTCAACTTGGGAAGCACTG 59 Novel Rattus norvegicus 81 SNORA32 ENSRNOG00000058808 ENSRNOT00000077244 3 1 1 64 1 1115904 1115922 ATTTGCTGTGGACATGACC 59 1115949 1115968 GCTAGACAAGTAGCATCTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0667.2 ENSRNOG00000051325 ENSRNOT00000076454 3 1 1 60 X 65804327 65804347 GAAATAAGGCTCCCTCAAGTG 59 65804369 65804387 CGTCTTCCATTCCTCTCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061336.3 ENSRNOG00000059023 ENSRNOT00000083216 3 1 1 61 4 116935984 116936002 AGTTTCTGGGCTGAAGTCC 60 116935941 116935962 AGACTGCAGAAGTTGAATTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057948 ENSRNOT00000086874 3 1 1 64 1 200157735 200157753 AGATCCCAGCAGTACATGC 60 200157781 200157799 TATCCTTGTACAGGGACCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055162 ENSRNOT00000080902 1 1 1 60 1 264686110 264686129 CAGGAAGATTAGCTTGACCC 58 264686152 264686170 TTATGGAACGCGTCATGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000053785 ENSRNOT00000085977 1 1 1 60 1 243119344 243119362 CCACAGAAGAGCACATTCC 59 243119302 243119321 TCTCTGGTACCAACTACGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056238 ENSRNOT00000084949 2 1 1 60 1 80155796 80155815 GCTACCATGATCATGAAGGG 58 80155838 80155856 CACATCTGGAGTGCAATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054583 ENSRNOT00000079025 2 1 1 61 2 155488502 155488520 GAGAGGCTAGGTCTATGCT 58 155488459 155488482 GTTAGGCTACTAATCATTCAGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0026.4 ENSRNOG00000059066 ENSRNOT00000089400 3 1 1 83 20 2589714 2602376 GGCTCCTTGAGGATATTTCTC 58 2589651 2589669 AAATGACTGCAGTCTCCCA 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000060227 ENSRNOT00000087216 3 1 1 60 1 53435023 53435041 TGGAGTGGATGATCCTGAG 58 53434981 53435000 CAAATTTGCGTGTCATCCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000061306 ENSRNOT00000082268 2 1 1 60 2 550733 550752 CATGGACACTATGAACGCAC 59 550775 550793 TCTCAGATAGCTGTAGCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061087.1 ENSRNOG00000052612 ENSRNOT00000084103 1 1 1 60 4 103761859 103761877 TTGTGATGACTCAAGCTCC 58 103761817 103761835 GAGATGGAAGCTGACTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053716 ENSRNOT00000085818 3 1 1 60 14 19919462 19919480 GGAATGGCTTCTGTGTCAC 59 19919420 19919438 TAGACATAGCCTCCCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005888.2 ENSRNOG00000060219 ENSRNOT00000077702 2 1 1 227 1 204320863 204320881 TTCATTCCCTGTACAGCCT 58 204321076 204321094 CTCTGAGCTAACCTGTCGG 60 Novel DesignNoJunction Rattus norvegicus 81 U4 ENSRNOG00000054881 ENSRNOT00000084219 1 1 1 63 2 234693459 234693477 TGAGGTTTATCCGAGGTGC 60 234693414 234693433 ACAGCTGATCTTGTTGAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040480.1 ENSRNOG00000057407 ENSRNOT00000085348 1 1 1 80 X 102035748 102035769 TGAAGAAAGAGAACCCAAACTG 59 102032088 102035708 CATCATTGGCAGACATGGAC 59 Novel Rattus norvegicus 81 AABR07043287.1 ENSRNOG00000057292 ENSRNOT00000073554 1 1 1 80 19 27099259 27101167 GCTCAACAACGTAATGAAGTC 58 27101207 27101227 AGGCTGAATAGTAAAGGTCTG 57 Novel Rattus norvegicus 81 AABR07047011.1 ENSRNOG00000008861 ENSRNOT00000011720 1 1 1 83 5 15087575 15087594 GTTACTTCACCCTACTGGGA 59 15087640 15087660 TCTCAGGAGCTTCTGTCTG 58 Novel Rattus norvegicus 81 SNORD115 ENSRNOG00000055060 ENSRNOT00000082784 3 1 1 61 1 116719954 116719974 CAACAGAAAGACAAGAACAGG 58 116719913 116719934 CCTCAGCATAATCCTATTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055219 ENSRNOT00000089621 2 1 1 60 1 90959760 90959782 GGTTATGTGAATAACTGCTCTCC 59 90959722 90959741 TGGGAAGAGCAGCTATTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024932.1 ENSRNOG00000059091 ENSRNOT00000078734 2 1 1 97 16 22111031 22111049 TTTCACCATGCCATTTCCA 58 21955232 22110970 GGTGTCAAGCCATACTCTG 58 Novel Rattus norvegicus 81 AABR07024932.1 ENSRNOG00000059091 ENSRNOT00000078734 3 1 1 98 16 22111032 22111050 CTTTCACCATGCCATTTCC 57 21955232 22110970 GGTGTCAAGCCATACTCTG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000051717 ENSRNOT00000089301 1 1 1 60 4 101873465 101873484 ACACATGTGTCAATAGGTGC 59 101873424 101873445 GGTCAGAATACTGATCAGAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058378 ENSRNOT00000084332 2 1 1 60 2 83500176 83500195 ATGTCCATTTGCTGATCACC 59 83500218 83500236 TAAGCATCCACCTAGCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058378 ENSRNOT00000084332 3 1 1 60 2 83500177 83500195 TGTCCATTTGCTGATCACC 58 83500218 83500237 TTAAGCATCCACCTAGCCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.5 ENSRNOG00000047240 ENSRNOT00000072474 1 1 1 60 1 121187530 121187549 CTGATCAGTCAGGCTACTGG 60 121187489 121187508 GCTTTGGTTATACCCAGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060547 ENSRNOT00000091843 2 1 1 60 14 2163625 2163647 GGAACGATACAGAGAAGATTAGC 59 2163587 2163605 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1411.1 ENSRNOG00000053703 ENSRNOT00000089765 3 1 1 106 7 143291047 143291169 AGTCAACATCTCCGTGGTG 60 143290959 143290977 CACCATAGGAGAAGCTGCT 59 Novel Rattus norvegicus 81 AABR07015055.1 ENSRNOG00000056747 ENSRNOT00000088111 3 1 1 61 14 46523913 46523931 AGAGGGTGTAAATCTCGCG 60 46523956 46523974 CTGTTCACCTTGGAGACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC113773.2 ENSRNOG00000058178 ENSRNOT00000090224 2 1 1 181 1 255170931 255171109 CCTGATTCGGCTAGAATTATATCAG 59 255170485 255170505 CTCTTCCTCTTCTTCCTCCTC 59 Novel Rattus norvegicus 81 SNORA5 ENSRNOG00000055611 ENSRNOT00000084467 1 1 1 60 1 88411713 88411732 TGCCATAGAAACTGTCATCC 58 88411672 88411690 CTGTGAGTAGAGCCTGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017141.1 ENSRNOG00000054783 ENSRNOT00000073371 3 1 1 60 15 12723338 12723359 GGTAGATGGCTCTGTAAATACC 58 12723299 12723319 CTGCCTGTATTTCCTCTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053253 ENSRNOT00000088598 3 1 1 60 1 72978177 72978195 CGTAGACTACCTTCTCCCT 57 72978135 72978156 GCTCTAATGGAGGAATACAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000054792 ENSRNOT00000082490 3 1 1 62 1 116729373 116729394 ACAACAGAAAGTCTAGAACAGG 58 116729332 116729353 GATAAGCATGGATCAATTCAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057841 ENSRNOT00000085645 3 1 1 60 2 112669035 112669055 GGCTAAACTTTGTCCTTTCCC 60 112669074 112669095 CCCATTATCACAAATTGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005004.1 ENSRNOG00000054551 ENSRNOT00000083317 3 1 1 60 1 174133689 174133707 ATGTGAACTGAGGGAACCT 58 174133731 174133749 TGAGGCAACAAGCAATACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061926 ENSRNOT00000091332 1 1 1 60 2 53669290 53669308 CATGCTTCATGTGTCCTGC 60 53669332 53669350 AAGACCAGGGAAGCTTTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000054759 ENSRNOT00000086068 2 1 1 60 1 121575472 121575492 CAACAGAAAGTCAAGAACAGG 58 121575513 121575532 CTCAGCGTAATCCTATTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000055924 ENSRNOT00000084262 3 1 1 60 1 213460769 213460788 AAACCTACCCTGTGTACACC 59 213460810 213460829 ACCCATTCACAATACAGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053119 ENSRNOT00000091358 2 1 1 60 14 62552044 62552062 AGGTGGCAGTGAAGTAAGG 59 62552083 62552104 CATTCAGGTACTCACAGTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058717 ENSRNOT00000090801 3 1 1 60 14 81845099 81845119 ACTAAGACCAGAAGGACACAG 59 81845059 81845078 ACGAATCTGCATGTCATCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043279.1 ENSRNOG00000058517 ENSRNOT00000087468 1 1 1 80 19 26985602 26986791 ATCCAAGAACAACAGGCCA 60 26986834 26986853 ATTGACATGACCACCTCCTC 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000054503 ENSRNOT00000078234 1 1 1 61 14 104467084 104467102 GAAGACGCAGAGATCAGCA 60 104467041 104467060 ACATGGTATGCTTCACAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061535 ENSRNOT00000089253 2 1 1 60 2 176306156 176306178 AGGACTATCTTCCCAGAATACAG 59 176306118 176306136 CGCAGCAACTCATATACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058469 ENSRNOT00000087939 3 1 1 60 5 63700909 63700933 GATATAAGGATGATCAGAGTGTGAC 59 63700949 63700969 GCTGAAACAACCTTAGTGACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565989 ENSRNOG00000013940 ENSRNOT00000047544 2 1 1 80 2 127916269 127916289 GCTTTAGAGTATCACGTTGGG 59 127916328 127941961 AACATTTGAACTGCTGACAGAG 60 Novel Rattus norvegicus 81 AABR07061801.2 ENSRNOG00000060820 ENSRNOT00000083660 2 1 1 80 4 144917119 144917155 AGAAATCAGGAAACAACCCT 57 144917196 144917216 CTTGTATTCTGTTGGTGATGC 58 Novel Rattus norvegicus 81 AABR07068248.1 ENSRNOG00000055670 ENSRNOT00000078129 3 1 1 80 9 92625500 92625522 TCTGACTTACAAGAGTGAAGCT 59 92625439 92625458 TGCTGTATCATGCTGAACCT 60 Novel Rattus norvegicus 81 AABR07014804.1 ENSRNOG00000024829 ENSRNOT00000039626 1 1 1 60 14 32257922 32257943 CAGGGTTCACTAAAGAAACTGG 59 32257961 32257982 TCATGTTCACCTCTTCAATACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057154 ENSRNOT00000079164 2 1 1 60 1 251643636 251643657 TAGAACCAACAAACAAGCTCTC 59 251643597 251643618 TGTATTCCTCTCCCATTCTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058302 ENSRNOT00000090879 1 1 1 67 14 45942017 45942036 TAGAGGCTTTACAGGTGTGC 60 45942066 45942084 TAGTCTTTCACCTCCCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_2_2049.3 ENSRNOG00000054907 ENSRNOT00000089421 2 1 1 60 2 185438506 185438527 AAATGAAATCCGTGTGACTGAC 60 185438467 185438488 GGTCTTAGATTTGACCTTGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045148 ENSRNOT00000070415 2 1 1 60 14 9278931 9278949 ATCTCGTAAGCTGAGCAGG 59 9278889 9278909 GTAATATGGTGACCTCCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044505 ENSRNOT00000069772 2 1 1 60 14 34698461 34698481 CCCATCTCATCTGATCTTGGA 59 34698502 34698521 CTCCCACTCAAGTACTGACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059914 ENSRNOT00000082418 3 1 1 60 5 76168180 76168199 CCACTACAATACAGAGCCAC 58 76168139 76168159 AGAGGTAGAAGATGAGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC117925.4 ENSRNOG00000057972 ENSRNOT00000089870 1 1 1 80 4 114822760 114822783 CTGATGGTAGTGGATAATGAAGAG 59 114822566 114822721 ACTGTCTTCATCCAGCCAG 59 Novel Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000052601 ENSRNOT00000079689 1 1 1 60 2 161553369 161553387 TCATGGACACTTCGAACCC 60 161553411 161553429 CTCAGACAGGTGTAGTCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058502 ENSRNOT00000083630 1 1 1 60 2 107628977 107628997 TGTCACATGTATGTCAGGAGG 60 107628937 107628960 CATTCAGATAGGCAGAACATAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058502 ENSRNOT00000083630 2 1 1 60 2 107628980 107628999 TGTGTCACATGTATGTCAGG 58 107628939 107628960 TTCAGATAGGCAGAACATAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058835 ENSRNOT00000081774 1 1 1 60 3 163446934 163446954 GTTGATGTGGCTGATAATGTC 58 163446974 163446994 GACTGATTGACTAGCTGACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060169 ENSRNOT00000080034 1 1 1 60 1 59770154 59770175 ATACAGAGGAGATTAGCATGGC 60 59770195 59770214 GGAACGCTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052019 ENSRNOT00000089598 3 1 1 60 1 224887133 224887152 ATTTGACATCCCATTTGGCT 58 224887092 224887111 AAACTTGCTTATCCAGCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911918 ENSRNOG00000047261 ENSRNOT00000076222,ENSRNOT00000071364 1 2 2 89 18 14776136 14905595 GCCTGGATGTTCAAATTGGG 60 14905647 14905665 CATGCGATGATGTCATGCC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059609 ENSRNOT00000089753 2 1 1 61 2 96521607 96521625 CTGTCAGTAGGTGGCAGAG 60 96521648 96521668 TATTCATGGGTCAGAACACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060575 ENSRNOT00000080664 1 1 1 60 12 6108553 6108573 AGTGAACCATATACACAGAGC 58 6108513 6108531 ATTCTGAGCACTCGTCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052482 ENSRNOT00000082829 1 1 1 61 12 30182230 30182248 AGAGGCCATGTCTATGCTC 59 30182270 30182291 TGTTAGGCTACTAATCATCCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035194.1 ENSRNOG00000055786 ENSRNOT00000087840 2 1 1 80 12 6629879 6630226 CTCTTTCAGGAACATGAGAAGAG 59 6629821 6629843 CCTCATACTCTGCTTCATTATGC 60 Novel Rattus norvegicus 81 AABR07069324.1 ENSRNOG00000052334 ENSRNOT00000092214 1 1 1 114 8 17562177 17562195 CTCAAGGGACTGTCTCCAG 59 17562079 17562099 CTGTTCGTTCACACTTGGG 59 Novel Rattus norvegicus 81 AABR07019572.1 ENSRNOG00000056176 ENSRNOT00000082995 3 1 1 61 15 109346027 109346048 CAAAGCAACACTAACTTCTGGA 59 109346070 109346089 TTCTAAGCAAACACAGGCC 58 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000061673 ENSRNOT00000085838 3 1 1 84 5 168053587 168053605 ACAAGGTGGTTTCCCAGAG 60 168053653 168053671 GTTAAGTTTCCCACGCTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009638.1 ENSRNOG00000030152 ENSRNOT00000043933 1 1 1 60 2 106702867 106702886 CACAACGGTTAAGAACAAGG 57 106702826 106702847 CTTCTCAGAAACATAGATGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058969 ENSRNOT00000081128 1 1 1 69 5 164201035 164201054 GCTCCAGTAGCACATATCCT 59 164201086 164201104 TTATCCTTGTGCAGAGGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000058669 ENSRNOT00000078457 3 1 1 60 5 6800272 6800291 AGTCGTACTGTAGCTGTTGG 60 6800314 6800332 ACAAACCACAGGAAGACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047522.1 ENSRNOG00000056724 ENSRNOT00000091648 1 1 1 60 5 36237291 36237310 CTCATCAGTAAGAGCACTGG 58 36237250 36237271 GTGGTTGCTGGAAATTTAACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013288.3 ENSRNOG00000050314 ENSRNOT00000072390 1 1 1 60 2 231875230 231875249 CACTTAAACGTGGTTGTCCT 59 231875272 231875290 CACCCAAACATGGAAGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040690.1 ENSRNOG00000055939 ENSRNOT00000092013 1 1 1 63 X 107634279 107634299 ATACAGTCGTTCGCTGGAG 60 107634326 107634344 CTTGGCTTAGCCAGTTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000060276 ENSRNOT00000081894 3 1 1 61 2 189311889 189311907 CTAAAGGCGGGAAACTCGA 60 189311846 189311865 GGGAGAGCACAAACATAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053305 ENSRNOT00000083473 1 1 1 62 1 254469983 254470001 CGAGGCAGAGAAGATTAGC 58 254469939 254469959 GGAACGCTTCACAAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049348.1 ENSRNOG00000008914 ENSRNOT00000011831 2 1 1 96 5 117973306 117973326 ACAGACAATTACAATGGGCTC 59 117973381 117973404 GTGATTCATTAGGAACATGGCA 59 Novel Rattus norvegicus 81 Rn60_X_0771.2 ENSRNOG00000055485 ENSRNOT00000080128 3 1 1 80 X 77065754 77073615 GCTAATGCTTCTAAGGTCTCTG 59 77065695 77065715 GACAGTGGCTTTATCATCCTG 59 Novel Rattus norvegicus 81 SNORA18 ENSRNOG00000059407 ENSRNOT00000089077 2 1 1 60 2 217476725 217476744 TTTGAGGTCTATCCCGATGG 59 217476766 217476785 ATATGAGGCGTTTCCAACGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017737.1 ENSRNOG00000059001 ENSRNOT00000085402 1 1 1 76 15 30440792 30440810 TTCACTAGTGGTCCTGTGG 59 30441022 30441040 TGAGTGATTCTGGGCTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000055090 ENSRNOT00000080855 2 1 1 61 7 102030534 102030552 ATGCTTACTTTGGCAGCAC 59 102030491 102030509 GGGCCATGCTAATCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000060014 ENSRNOT00000091246 2 1 1 60 9 60527137 60527159 TTAGAAGCAGGGAGATAAGACAG 60 60527176 60527197 AATAAGAGGGTGATTTGTGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070559.1 ENSRNOG00000054463 ENSRNOT00000081474 1 1 1 80 8 74982447 74982465 TTTCACAGAACTCCCGTCC 60 74982504 74982529 TCTACCTACAGGTAAAGTCAACAG 60 Novel Rattus norvegicus 81 AABR07001807.1 ENSRNOG00000056478 ENSRNOT00000090895 2 1 1 82 1 58344903 58345123 GGGACCACAGAAATAGCAG 58 58344839 58344857 TTTCTGTTGCTTGGGTTCC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000061887 ENSRNOT00000079428 2 1 1 60 9 17933206 17933225 GAAGAGGATGACCTTCCCTG 60 17933247 17933266 CTACTCGTACACCCTTGACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000043884 ENSRNOT00000069151 3 1 1 60 9 15728141 15728162 ACCTGATCTTGTCTCATCTCAG 59 15728102 15728120 CCCATCCAAGGACTAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050116.1 ENSRNOG00000056863 ENSRNOT00000081107 3 1 1 60 5 152070725 152070744 CAGATGAGAATCCACAAGCG 59 152070684 152070705 TCTGCTTAACAATCTCAGAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029742.1 ENSRNOG00000003214 ENSRNOT00000004285 3 1 1 81 10 48988104 48988124 GAAATGAAGTATGAGCCGCTG 60 48988167 48988186 GAACTACGCCCATACAGGT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000057287 ENSRNOT00000086949 1 1 1 60 1 184390201 184390219 GTGTCAGTAGGTGGCAGAG 60 184390159 184390179 TGTTCCTAGGTCTACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA29 ENSRNOG00000051969 ENSRNOT00000079223 3 1 1 61 1 48030483 48030501 TGCCATGATCTGAAGAGGG 59 48030440 48030463 CTGTTCAGCCATTTCATATAGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060321 ENSRNOT00000084828 2 1 1 69 1 189016567 189016585 GTGTCAGTAGGTGGCAGAG 60 189016516 189016536 CTATTCAGATGTTCGCAGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042226.1 ENSRNOG00000058521 ENSRNOT00000088194 3 1 1 83 X 150660901 150666257 CATATAAGTTACACGGCAGCA 59 150660838 150660857 CACACTCATCAGTCACAAGG 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000048971 ENSRNOT00000074679 2 1 1 60 1 217417675 217417694 GCCTAGTCTTAGCTGATCTC 57 217417716 217417735 CCCATACAAGTGCTAACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059853 ENSRNOT00000086327 1 1 1 60 6 73437908 73437926 GAGAAGATTAGCATGGCCC 58 73437866 73437884 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103691843 ENSRNOG00000058174 ENSRNOT00000090742 3 1 1 60 3 77365117 77365138 ACTCATCTTTACCTATGTCCCA 59 77365078 77365099 CAGAGCAAATACCTTGTCATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017617.1 ENSRNOG00000053459 ENSRNOT00000081806 2 1 1 69 15 29246144 29246162 TTACTCCTAGGCCTTCACC 58 29217582 29217600 GTTTCACCTGTTGCTGGTC 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000058615 ENSRNOT00000085421 3 1 1 60 1 197983403 197983427 GATACAAGTAAGATTAGTATGGGCC 59 197983367 197983386 GAATGCTTCACGAATCTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017825.4 ENSRNOG00000052896 ENSRNOT00000077849 1 1 1 80 15 31469996 31470192 AGATTTGCTGGGTGAAAGGA 60 31470234 31470253 TCAGAACAGAACTGGTTCCC 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000057771 ENSRNOT00000091718 2 1 1 63 13 72734479 72734497 AGAGATCAGCCAGCATGAC 60 72734434 72734453 AAACGTGTAACACTTCCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055135 ENSRNOT00000080310 2 1 1 127 10 93386325 93386344 ATAAGCTCTGCTGTGATCAG 58 93386434 93386452 ACTACCACAAGTTACACGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003017.1 ENSRNOG00000040273 ENSRNOT00000013741 3 1 1 60 1 93242187 93242210 CAAATATCATCCAGGTTACTTCGG 60 93242226 93242247 GTTCCTCTTCAAGTGGTAATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0843.1 ENSRNOG00000051354 ENSRNOT00000076759 2 1 1 83 13 79330638 79339737 CATTGATCTGGATGTGTCTCTG 59 79339781 79339799 ACCAGGCAGGAACTAACTG 59 Novel Rattus norvegicus 81 SNORD115 ENSRNOG00000058803 ENSRNOT00000087736 3 1 1 61 1 56873040 56873061 GACAACAGAAAGTCAAGAACAG 58 56873000 56873019 TCAGCGTAATCCTATTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061459.1 ENSRNOG00000052174 ENSRNOT00000080234 3 1 1 60 4 126071146 126071169 GTACAACATAGAGAAGGATATCGC 59 126071109 126071130 GTTGTACTTCTTGTCAAACTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060963.1 ENSRNOG00000055428 ENSRNOT00000087773 2 1 1 60 4 101883024 101883042 GGGTTATTGATGCTCTGCT 58 101883176 101883194 ATGGAGACTGGGTCATCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07061022.2 ENSRNOG00000061699 ENSRNOT00000085205 2 1 1 60 4 102876041 102876059 ATCCAGATGACCCAGTCTC 58 102876081 102876101 TAATAGTGACTCTGTCTCCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017635.2 ENSRNOG00000061833 ENSRNOT00000082167 1 1 1 72 15 29443322 29443340 TACTCCTAGGCCTTCACCT 59 29443131 29443149 CTTTGTTTGACCTGCTGCT 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000056935 ENSRNOT00000078581 2 1 1 60 13 2838458 2838478 ACAAGGGTATACGAGTAGCTG 59 2838498 2838518 GGACCTTGAGAACTTGTTTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0744.3 ENSRNOG00000051356 ENSRNOT00000076115 1 1 2 90 X 73425475 73426375 GTGCCTGAAGACATTGGTC 59 73426429 73426447 TACTACAGCAACAGTGGCA 59 Novel Rattus norvegicus 81 AABR07017634.1 ENSRNOG00000055402 ENSRNOT00000082901 1 1 1 106 15 29446163 29446181 CAGAAATGCAGTGCCTGAG 59 29402557 29402575 CTTTGTTTCACCTGCTGCT 59 Novel DesignNoJunction, InUTR Rattus norvegicus 81 AC095959.1 ENSRNOG00000058957 ENSRNOT00000079940 3 1 1 60 3 78134229 78134248 AAAGCTCTGTCTACTTGTGG 58 78134188 78134207 TACATGGGACAAAGAACGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07020815.1 ENSRNOG00000058034 ENSRNOT00000078185 1 1 1 60 13 42220346 42220365 CTCCGACACCTTCTTCTACC 60 42220387 42220406 AGAAGACACGTTGTAGAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ACEA_U3 ENSRNOG00000059255 ENSRNOT00000079074 2 1 1 63 20 45357216 45357239 ACTAGAGAAGTTTCTCTGACTGTG 60 45357261 45357279 GAGAACGCTACGTCTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052663 ENSRNOT00000086940 3 1 1 65 2 97060876 97060895 ACTAATTTGGAACCCGAGGG 60 97060830 97060848 AATTTGCGTGTTCATGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064690.1 ENSRNOG00000060564 ENSRNOT00000092179 2 1 1 60 6 90683512 90683532 TGTATTTCCAGAAGTTCCCAG 58 90683472 90683491 TCTTACAACTGAGACATGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Telomerase-vert ENSRNOG00000054124 ENSRNOT00000090594 3 1 1 84 4 150151443 150151462 TGTTATAGCTGTGGGTTCTG 57 150151378 150151397 CATGTCTGAACTTTCCAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021527.1 ENSRNOG00000061773 ENSRNOT00000090371 3 1 1 67 13 76595610 76595630 GGGCTGTTGATACAATTTCTC 57 76595657 76595677 GAGTAGGATATTGACGATGCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054615 ENSRNOT00000077466 2 1 1 60 13 5099890 5099908 CCAGTCTTCACTCAAGGGT 59 5099929 5099950 GCTTGTTTGGAGATTCTAGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054343 ENSRNOT00000088667 1 1 1 60 13 98915007 98915029 GGAACGATACAGAAGAGATTAGC 59 98914969 98914987 CTTCACGAATTTGCGAGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000056985 ENSRNOT00000091798 1 1 1 72 5 129142754 129142772 ATGAGGTTTATCCGAGGCG 60 129142700 129142718 ATTTCAAGTCGTCATGGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA67 ENSRNOG00000052115 ENSRNOT00000080700 3 1 1 60 10 56272256 56272274 GCAACTTGGAAGAAAGCCA 59 56272214 56272235 GGAAACAAGTATTCCTTGTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018062.1 ENSRNOG00000036382 ENSRNOT00000054499 3 1 1 62 15 38054892 38054911 CATCTCTGGGCGAGTATCTC 60 38054936 38054954 AAGGCTCAGAGGTCTAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Catip ENSRNOG00000037835 ENSRNOT00000077820,ENSRNOT00000080528,ENSRNOT00000071700 3 3 4 137 9 81644543 81644561 CTCCAAAGCCAAGGATCAC 59 81644662 81645113 ATATCCTCCAACCGGAAGG 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000045510 ENSRNOT00000070777 3 1 1 61 20 37200835 37200853 TAAGCAGGATCAAGCCTGG 60 37200875 37200896 AAGAGCACATGGTATTTCTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058385 ENSRNOT00000091926 2 1 1 78 3 80018735 80018753 GTCAATGTTGTTGGCAGAC 58 80018795 80018813 CTCGTCATCTTCTTGCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA3 ENSRNOG00000053634 ENSRNOT00000088281 3 1 1 60 13 77065436 77065457 ATCCTACATAAACATGGAGGTC 58 77065477 77065496 GAACGATCAGACTTAGCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021840.2 ENSRNOG00000048479 ENSRNOT00000075519 2 1 1 60 13 94942051 94942070 GCAGCAATTGTTCTTTGGTC 59 94942092 94942111 CTCTTCGGTCTTTCAGACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021840.2 ENSRNOG00000048479 ENSRNOT00000075519 3 1 1 60 13 94942051 94942069 GCAGCAATTGTTCTTTGGT 57 94942092 94942111 CTCTTCGGTCTTTCAGACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041453.1 ENSRNOG00000055211 ENSRNOT00000084149 1 1 1 61 X 130664068 130664086 CCAGCATTTGTTGTCACCC 60 130664023 130664042 GAGATTTCACCTCACACCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051939.1 ENSRNOG00000054249 ENSRNOT00000088418 1 1 1 60 3 29600429 29600450 GCTTTGACTAGAGTGACTAGTG 58 29600470 29600489 TCAGTCTCTTCTGTCATGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052410 ENSRNOT00000087205 1 1 1 60 5 72315309 72315329 CACATGTGCATTAGTAGGCTG 60 72315269 72315289 GTCAGAACACTGAGCATAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029809.1 ENSRNOG00000060742 ENSRNOT00000083485 1 1 1 80 10 52478492 52478514 AGATTTCACCTCACATGCG 58 52478430 52478449 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000061274 ENSRNOT00000077104 3 1 1 61 13 74169747 74169766 TGGAACAATACAGAGCAGAC 58 74169705 74169723 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057424 ENSRNOT00000080955 1 1 1 82 7 70150280 70150298 TACAGGCAGTACAGGTGTG 59 70150216 70150234 ACACTGAGCATAGACGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058985 ENSRNOT00000083032 2 1 1 60 13 109802335 109802354 AGTCTCCATTGAGGAAGACG 59 109802377 109802395 CATACCCTGACCAGGAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044905 ENSRNOT00000070172 3 1 1 60 3 110116756 110116774 TGAATGTGCCCAATCTTGC 59 110116796 110116816 CAGATATTAACAAGGCCCGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058287.1 ENSRNOG00000054367 ENSRNOT00000086715 1 1 1 60 7 108551263 108551284 TCCCTAAGCCAAATAAGTCTCC 60 108551223 108551242 ACGCCTTTGGGTAACTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07031184.1 ENSRNOG00000056808 ENSRNOT00000091534 3 1 1 80 18 3617477 3617496 CCAACAAATGTTCCACAGCT 59 3617412 3617434 CTGCCTTACATTGCGTGAG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000058098 ENSRNOT00000091380 2 1 1 60 19 5590757 5590779 GATACAGAGAAGATTAGCATGGC 59 5590719 5590737 GAACGCTTCACGAATATGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028009.1 ENSRNOG00000061359 ENSRNOT00000089943 1 1 1 60 17 52755944 52755962 GAAGATTGTGGTCCTCCTG 58 52755985 52756004 GAGTTGCTCAATGACATCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057019 ENSRNOT00000079615 2 1 1 60 19 20431987 20432011 GTGATCTATCTGTCTGTGAAATCTG 60 20431951 20431969 AGCTGAACTAGATCAGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054025 ENSRNOT00000082993 2 1 1 60 7 136948372 136948392 GGATAGCATGGAGATTAGCCT 59 136948332 136948350 GACACTTCACAGAATTGCG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000043978 ENSRNOT00000069245 2 1 1 60 18 32756123 32756145 GTCTGATCTCAGAAGCTAAACAG 59 32756085 32756105 CCAAGTTGTGGGAATACTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054968 ENSRNOT00000090088 1 1 1 60 7 15051514 15051534 GAGACACCATGATCATGAAGG 59 15051474 15051495 CATCCCAAGTACAGTAGATGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC133424.1 ENSRNOG00000053490 ENSRNOT00000071850 1 1 1 174 15 35647011 35647030 ACTTGCAGCCTCTAATACCT 59 35647167 35647188 GATGTGAGAGCTAGTCCGA 58 Novel Rattus norvegicus 81 AC126292.2 ENSRNOG00000055526 ENSRNOT00000091664 3 1 1 60 5 135687777 135687796 CCAGATGAGAATCCACAAGC 59 135687815 135687837 CTGCTTAACAATCTCTGAAGGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051643 ENSRNOT00000078952 1 1 1 60 5 29570747 29570768 CAACACTTGTTTCAGTAGTTGG 58 29570708 29570728 GTCAGAACACCAAGTGTAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058844 ENSRNOT00000083584 3 1 1 61 19 44103802 44103825 GGAATGATGCAGAAACTAGTATGG 60 44103843 44103863 AAGGCTTCATGGATTTGAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044850 ENSRNOT00000070117 3 1 1 60 5 28555448 28555468 TGCTAAGTAGGATGAGACCTG 59 28555408 28555429 AACTATAGCTTCACCTATGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032413.1 ENSRNOG00000048770 ENSRNOT00000074068 1 1 1 60 18 64511582 64511601 CCCAGAGTCCTAACAATGTC 58 64511621 64511642 CTTCATGTATGAGGTCTCAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA50 ENSRNOG00000061509 ENSRNOT00000081675 3 1 1 60 19 12755596 12755616 AGATGTGGCTTGTTTACATCC 59 12755556 12755576 TGCTGAAGGAATCACTAAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055682 ENSRNOT00000088809 3 1 1 60 15 12549297 12549318 GATACAGAGAAGATCAGCATGG 59 12549339 12549357 GGAATGCTTCACGATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097153.2 ENSRNOG00000049523 ENSRNOT00000074021 1 1 1 60 2 2510225 2510248 CTACTGGAACTTATCAGTTGCC 59 2510268 2510287 CTGTGTTCTTGTACTCTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065217.1 ENSRNOG00000036500 ENSRNOT00000054608 1 1 1 60 6 115823214 115823234 GTATCTGTGGGCGAGTATCTC 60 115823174 115823192 CAGAGGCCTCTGAGTTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058044 ENSRNOT00000087590 3 1 1 62 3 64075784 64075803 CAGAGAAGATTAGCATGGCC 59 64075741 64075759 AAATATGGAAGCGTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058325 ENSRNOT00000077946 2 1 1 60 18 78635400 78635420 ATTCTGAAATTGGACCGACAC 59 78635441 78635460 TGTACATCATCCTTGCTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061852 ENSRNOT00000087946 1 1 1 60 3 109913371 109913392 ATACAGAGAAGATTAGCATGGC 58 109913412 109913431 GGAACGCTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060058 ENSRNOT00000077716 3 1 1 60 3 74347741 74347764 GGAGTGATACAGAGAAGATTAGCA 60 74347783 74347801 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000055067 ENSRNOT00000072497 2 1 1 60 19 56338807 56338825 CGATCTCGTCTGATCTCGG 60 56338765 56338785 TCTCCCATCCAAGTACTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041864 ENSRNOT00000063617 1 1 1 60 18 11640216 11640234 ACCCTGAATGCACCTAGTC 59 11640257 11640276 TATAACTGGGACCCACTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061120 ENSRNOT00000083846 3 1 1 86 15 25633825 25633846 ACAACATAGATGCTGACATAGG 58 25633760 25633780 GGAGTTCTTGCCAAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051765 ENSRNOT00000090169 1 1 1 60 15 39046989 39047008 CTGTGTCACATGTGTTTGAG 57 39046948 39046969 ATACTGAGTTTAGACCTAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053851 ENSRNOT00000084804 1 1 1 60 3 4022502 4022522 ACATACACTGAAGTTGGAACG 59 4022462 4022480 TGTCATCTTTGCCCAGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000053806 ENSRNOT00000086449 2 1 1 61 X 1517978 1517996 GAGTTGGGAGGTGAGTTCC 60 1517935 1517954 CCTCTTCTGTCCAGTTTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000056726 ENSRNOT00000089846 2 1 1 60 7 121371492 121371510 CAGTTTCCCTTCCTAGCCA 59 121371450 121371468 AAATGGTGACAGCTTTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057105 ENSRNOT00000090607 1 1 1 60 3 176928441 176928462 GCTAGAGTGCTTAGTTTAGCAG 59 176928402 176928425 TAGTACAGAGGCCATACTAATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058532 ENSRNOT00000089267 1 1 1 60 10 66946187 66946206 CACCATACAGAGACTCACAC 58 66946228 66946247 GACCGTTTCATGAATTTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052218 ENSRNOT00000079398 1 1 1 60 7 121675548 121675567 TGTCACATCAGTAGGTAGCA 58 121675507 121675525 CAGATCAGAACACTGAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054947 ENSRNOT00000079612 3 1 1 75 3 150991173 150991191 CTTATCCATTGCACTCCGG 58 150991116 150991134 CCACAAATTATGCAGTCGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000060046 ENSRNOT00000085028 2 1 1 65 10 43649717 43649735 CAAGTTCTGCTGCTCATGG 59 43649764 43649782 TCTGCAGCCAAACTTATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054705.1 ENSRNOG00000059645 ENSRNOT00000085779 3 1 1 80 3 167219719 167219738 TGCATGTGAACTTCACTCAG 59 167219539 167219676 TCTCCAGCATTACACCCTG 59 Novel Rattus norvegicus 81 AC112350.1 ENSRNOG00000047508 ENSRNOT00000073542 1 1 1 80 3 114182621 114182639 AAGCTGCCTACACCAAGAG 60 114182557 114182583 CTGAAGACTTCTTGTACTTATCTGC 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000060304 ENSRNOT00000081369 1 1 1 60 3 45629313 45629332 CTGAAATCGGAACGACACAG 59 45629355 45629373 CCAATTTGCGTGTCATCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065699.2 ENSRNOG00000055475 ENSRNOT00000083025 3 1 1 81 6 139531565 139531584 CCCTATACCTGCAAATGGAC 58 139531625 139531689 TGGTCACTAGTATCTGTGTCTG 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000041679 ENSRNOT00000063432 1 1 1 60 3 82292230 82292248 AGAAGCCTGATCCTGTCTG 59 82292188 82292207 AGCTTCTACTAACCAGACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065699.3 ENSRNOG00000057421 ENSRNOT00000081684 1 1 1 103 6 139551788 139551890 TTCCAACCTGTGTCCTGTC 60 139551957 139551975 TGAGAACCCAGAGACAGTG 59 Novel Rattus norvegicus 81 AABR07025051.3 ENSRNOG00000054322 ENSRNOT00000092000 3 1 1 74 16 26583539 26583561 TATGCATCCATAGTGGTGGG 59 26583595 26583616 TGTGCAATTATAGTCACAGGAC 59 Novel DesignNoJunction Rattus norvegicus 81 snoR38 ENSRNOG00000051978 ENSRNOT00000084995 1 1 1 60 10 105648385 105648408 GATGATCTAAGTTATCCCTGTCTG 58 105648427 105648445 CCTCAGTAAACCGTGACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058874 ENSRNOT00000091019 3 1 1 60 7 139421220 139421240 GTACTCTCCTGCTAGAACCTC 59 139421260 139421280 TCTTGTGTTACATGCGTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114070.2 ENSRNOG00000061459 ENSRNOT00000087987 3 1 1 60 15 35844377 35844396 CTACTGTTGTTCCCATGCTG 59 35844417 35844437 ACACTGACATCCTTATTCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035437 ENSRNOT00000053560 2 1 1 60 6 72181488 72181507 ATCTTGGAAGCTAAGCAGGG 60 72181447 72181465 GAATTCCCAGGTGGTCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034597 ENSRNOT00000052720 2 1 1 60 18 27673148 27673166 CGATCTCGTCTGATCTCGG 60 27673106 27673126 TCTCCCATCCAAGTACTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094643.1 ENSRNOG00000049731 ENSRNOT00000072200 1 1 1 60 7 11316056 11316075 GAAGGAGTGAGCATTGAAGC 59 11316015 11316033 TGTGGAAGGCAGTACACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055203 ENSRNOT00000087198 3 1 1 60 15 36193680 36193701 CAGTCAAGGGTATATCAGTAGC 58 36193722 36193740 CCTTGAGAGCTTGTTTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017527.1 ENSRNOG00000047841 ENSRNOT00000075763 2 1 1 60 15 25280247 25280267 TTAAGATGCAGATTCCAGTCC 58 25280207 25280226 GGAGCTTGTTAGAAATGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055800 ENSRNOT00000082608 3 1 1 63 10 37418980 37418998 AAGGCGGAACGATACAGAG 60 37419025 37419043 TCACAAATGCGCATGTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_0430.2 ENSRNOG00000055166 ENSRNOT00000092014 3 1 1 60 1 41594336 41594356 GTTCCAAACCCATCTTTAGTG 57 41594375 41594396 CTGTATGTTTATTTCCAGGGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057123 ENSRNOT00000077212 2 1 1 66 15 14916979 14916997 GTGTCAGTAGGTGGCAGAG 60 14917021 14917045 CAGATGTTCATAGGTAAGAACACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD53_SNORD92 ENSRNOG00000054970 ENSRNOT00000091849 1 1 1 60 6 23449458 23449476 TGTGATGATATCCACACGG 57 23449416 23449437 CAAGAGAAAGGTGTCATCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015687.1 ENSRNOG00000060369 ENSRNOT00000082217 1 1 1 108 14 70478895 70478915 CTACAGATTCAATGCAATCCC 57 70478805 70478823 AGCTTTAGCTATCCTGGGT 58 Novel DesignNoJunction Rattus norvegicus 81 ENSRNOG00000061185 ENSRNOT00000089055 2 1 1 76 17 43776280 43776298 TATCAGAAGTCCACCGAGC 59 43776222 43776241 TTGAAGTCCTGAGCGATCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_8_0646.1 ENSRNOG00000053753 ENSRNOT00000085526,ENSRNOT00000081697 3 2 2 95 8 64825815 64825833 TTCATTCCTGGAGAAGCCC 59 64822300 64825756 CTCTTGGAACACATGCTCC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000061228 ENSRNOT00000090649 2 1 1 60 20 10898492 10898511 GATGTCTTTCCTGGACAGAG 58 10898533 10898552 GAGAAGGCTAGCCATTTACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057206 ENSRNOT00000077209 3 1 1 60 5 93420357 93420379 GGGATGATACAGAGATTAACACG 59 93420398 93420417 AGGCTTCTCAAATTTGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061398 ENSRNOT00000088731 2 1 1 60 15 24789363 24789383 ATACCATGATCATGAAGGTGG 58 24789405 24789423 CACATCCAGAGTGCAATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056381 ENSRNOT00000088505 2 1 1 65 11 65146704 65146722 TCACATGTGCGTCAGTAGG 60 65146657 65146675 ACAGGTCAGAACACTGAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056306 ENSRNOT00000081580 2 1 1 60 15 74724232 74724251 TGCATCAGTATCTGGGAGAG 59 74724191 74724210 TCACAGGTCAGAACACTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052656 ENSRNOT00000086581 3 1 1 60 11 24095625 24095649 GTCAAGGGAATAAGAGTACATACAC 59 24095589 24095610 ACAAATGAGAGCCTGTCTAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056626 ENSRNOT00000077937 3 1 1 61 20 45224675 45224693 GTGTCAGTAGGTGGCAGAG 60 45224715 45224736 ATTCCTAGGTCAGAATGCTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051668 ENSRNOT00000082935 1 1 1 60 20 11037112 11037132 CTAGAACCTCCAAACAAGCTC 59 11037153 11037172 AGATGCCTCCATGAGATCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034729.2 ENSRNOG00000048042 ENSRNOT00000073682 3 1 1 80 11 85306365 85306388 AGATTTCACCTCACATGCGA 60 85306304 85306324 TTCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 U5 ENSRNOG00000053002 ENSRNOT00000079533 2 1 1 60 7 49541771 49541793 TACTCAAGATTTCCATGGAGAGG 60 49541733 49541751 GTCAAGACAAGGCCTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061628 ENSRNOT00000090185 3 1 1 60 19 33861496 33861514 CTGTGTCACATTGCGTCTG 60 33861454 33861474 GAACACTTGAGTACACAAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000053071 ENSRNOT00000078240 3 1 1 60 5 120163942 120163963 GCTTCTTAGGTACTATGTGCAG 59 120163983 120164002 TCTCCAACATCCTATAGGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058702 ENSRNOT00000082913 3 1 1 60 11 79317081 79317101 GTACATCAGTAGATGGCAGAG 58 79317041 79317059 ATAGGTCAGAGTCCTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051781 ENSRNOT00000084234 2 1 1 60 19 39207206 39207227 GAATCAGGAAAGATTAGCATGC 58 39207167 39207187 TCCACTGCTTCATGAATTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051897 ENSRNOT00000086373 3 1 1 60 9 14334118 14334136 ATGTGTCAGTAGGTGGCAG 59 14334076 14334095 CATAGGTCAGAACACTGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044047 ENSRNOT00000069314 3 1 1 61 9 110547371 110547389 TGAGCACACTTGATCTCCT 58 110547328 110547346 GAAGCAGTAAGCGGAACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058459 ENSRNOT00000091416 2 1 1 60 18 23172482 23172501 TTGCAGATATGGCTGTTGTG 59 23172520 23172542 TGAGCATAGATCTAGCTTCTGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065010.1 ENSRNOG00000042752 ENSRNOT00000064247 1 1 1 60 6 103927708 103927726 CGGGTGGAGAGTCATACTG 59 103927666 103927684 TGTGAAAGATTGGGACGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128967.1 ENSRNOG00000022022 ENSRNOT00000030173 3 1 1 60 4 157008635 157017338 TCAAACAAAGAAGCGGAGG 58 157008593 157008612 CAGTCAGTGCTCTTAACCAC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA5 ENSRNOG00000056003 ENSRNOT00000087539 3 1 1 91 19 10832363 10832381 CCTCTCATGATGGGAGCTG 60 10832435 10832454 TTATCCCTAGTTCCCACAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000061297 ENSRNOT00000078855 1 1 1 60 19 22477089 22477108 CATCAATATGGTGACCTCCC 58 22477131 22477149 GGTTCACTCCTCCTTAGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059760 ENSRNOT00000083192 1 1 1 60 6 57819899 57819918 CTCCAAACAAGCTCTCACAG 59 57819938 57819959 TTTATATGTTGCCCATGACCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043039.1 ENSRNOG00000055398 ENSRNOT00000077099 3 1 1 60 19 18812752 18812774 GTAATGCTTGGTTGCTCTATGAG 60 18812792 18812812 TGCTGCTCCTTTCTAAATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051557 ENSRNOT00000091947 3 1 1 82 19 61811008 61811026 TGAGGTTTATCCGAGGTGC 60 61810944 61810964 GGGCTAAGTACTCCTGAACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053542.2 ENSRNOG00000046653 ENSRNOT00000071731 1 1 1 60 3 112786694 112786713 CTCTTCTTCCTCCTCTTCCT 58 112786653 112786671 AAAGGAGGTGGAGGAAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053132 ENSRNOT00000080136 1 1 1 60 5 142878754 142878772 GGAAGATCAGTGTGGTCCC 60 142878795 142878814 AAATATGCAGCATCCCTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056291 ENSRNOT00000082768 3 1 1 60 18 34128216 34128238 GACCTTCCCTAAATAGAAGAGGA 59 34128255 34128276 GAGGCTACAGCTATTCATATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049890.1 ENSRNOG00000048618 ENSRNOT00000074785 1 1 1 93 5 142870498 142870516 CCTTGTTGGAGGAAGTGTG 58 142870573 142870591 CCTCAGACAGCAGGAAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA79 ENSRNOG00000055168 ENSRNOT00000077371 1 1 1 114 3 23279579 23279597 TATAGGCATGGCACTAGGA 57 23279483 23279502 TGACCCTGCAAATTTCAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055216 ENSRNOT00000079125 3 1 1 63 3 163463272 163463291 CAGAGAAGATTAGCATGGCC 59 163463316 163463335 AAATATGGAACTCGTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065651.6 ENSRNOG00000052050 ENSRNOT00000087983 3 1 1 103 6 138640051 138640153 CATTTCCAAGCTGTGTCCT 58 138639966 138639984 GAATCCAGAGACAGTGCAG 58 Novel Rattus norvegicus 81 U1 ENSRNOG00000058032 ENSRNOT00000090826 1 1 1 60 5 114474022 114474043 GGAGATAACATGTTCACAAAGG 58 114474061 114474082 TCCAGAGTGTGATAAACAAACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA8 ENSRNOG00000052950 ENSRNOT00000084400 1 1 1 62 5 104951924 104951943 CAATTGTCACTAGACCTCCC 58 104951881 104951899 TTTCACTCAATTCGCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044703 ENSRNOT00000069970 2 1 1 60 18 27871024 27871042 CGATCTCGTCTGATCTCGG 60 27871066 27871084 TCCACAAGAGCAGAATCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068668.1 ENSRNOG00000061298 ENSRNOT00000090539 2 1 1 60 9 114281360 114281379 TTTATTCTGGACCTGTGGCT 59 114281319 114281342 GACAATCTATCCTCCAATATGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051399.1 ENSRNOG00000055886 ENSRNOT00000082845 2 1 1 82 3 9185828 9185846 CCTCTGCTTCAGACTTGCT 60 9185890 9185912 AGTTCTCTGTGTCCTTGTGAG 60 Novel Rattus norvegicus 81 AC120246.3 ENSRNOG00000055053 ENSRNOT00000079465 2 1 1 86 19 25839662 25839680 AAGTGGACCAGAGTTCCAG 59 25839731 25839751 GGCTTTCAGTATGTCCTGGT 60 Novel Rattus norvegicus 81 AABR07043271.1 ENSRNOG00000057212 ENSRNOT00000090756 1 1 1 80 19 26944630 26945889 CATGAAGAACAGGCCACAC 59 26944568 26944586 AGAATTGACATGACCGCCT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060476 ENSRNOT00000081478 1 1 1 60 11 50228808 50228829 GATTGTGTCATATGTGCATCAG 58 50228849 50228868 CAGAACATTGAACCTAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043601.3 ENSRNOG00000049551 ENSRNOT00000072648 2 1 1 82 19 30820135 30821796 TGACAATCCATGCATGCAG 59 30820071 30820089 CTCGATGGTCACTGGACTC 60 Novel Rattus norvegicus 81 SNORA44 ENSRNOG00000056879 ENSRNOT00000079344 3 1 1 73 20 11934188 11934206 ATGCCAGAGTAACGGAGAG 59 11934133 11934152 TATAGGAGAGCTGAGTGGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061345.1 ENSRNOG00000056962 ENSRNOT00000088557 1 1 1 93 4 117789844 117790303 GTGTAGTAGCGGGACTCAG 59 117789769 117789789 CGCAGATGTGATAAGAAACCA 59 Novel InUTR Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000053668 ENSRNOT00000089633 3 1 1 60 7 1625203 1625223 GATGAAGAACATGGCTAGCTG 59 1625244 1625263 GTCCATGATCAATGTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056611.1 ENSRNOG00000055726 ENSRNOT00000079193 3 1 1 60 7 32193193 32193212 CGGCAAAGTCAATACCTGTC 59 32193235 32193253 CGTCTCAGCATACTGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042859.1 ENSRNOG00000057392 ENSRNOT00000071592 1 1 1 61 19 12402888 12402906 AAGAAGTTAGACCGCAGGG 59 12402843 12402863 TCTTTGTTTAGCTCTGAACCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07010181.1 ENSRNOG00000055473 ENSRNOT00000091500 2 1 1 80 2 128194992 128195014 AAACCAGAACTTTAGTCTGGG 58 128194932 128194953 TATCAGATACAATGGGTAAGCC 58 Novel Rattus norvegicus 81 Rn60_1_0436.1 ENSRNOG00000059866 ENSRNOT00000087728 2 1 1 60 1 43563935 43563956 AAATCTCTGTGAAGTGGATGTG 59 43563896 43563916 TGAGAAGGTTAGGTTTCTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07046866.1 ENSRNOG00000060709 ENSRNOT00000085321 1 1 1 61 5 10125141 10125159 AGACCTGCTGATGCTACAG 59 10125183 10125202 CAGAATAGAAAGGCTCACCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065772.2 ENSRNOG00000051653 ENSRNOT00000081996 2 1 1 73 6 140642047 140642179 AAAGGTGTCCAGTGTGAGG 60 140641992 140642011 AGTTTCAGAGACCTTCCAGG 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000059692 ENSRNOT00000081956 1 1 1 60 9 42296681 42296701 GAGCTATACAGAGAAGACCAG 57 42296723 42296741 GCTTCAGGTATTTGCATGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000058725 ENSRNOT00000087159 1 1 1 60 5 91133001 91133019 GATGAAGAACGCAGCTAGC 59 91133042 91133061 GTCGATGATCAATGTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062289.1 ENSRNOG00000055734 ENSRNOT00000080471 1 1 1 197 4 166882502 166882524 GTGCTTCTGTCTATTGTTCTAGG 59 166882326 166882344 CGATGTCAGAGACACTGCA 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA27 ENSRNOG00000057459 ENSRNOT00000082764 1 1 1 60 6 80224782 80224801 AAGAGGCTAACACAGAAGGG 60 80224824 80224842 GAGTGGAGCCTCTTCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059531 ENSRNOT00000077576 1 1 1 60 11 52947366 52947387 GATACAGAGAAGACTAGCATGG 58 52947408 52947426 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054645 ENSRNOT00000080789 1 1 1 60 11 49046054 49046076 CAGAGAAGTTTAGCTATGAACCC 59 49046094 49046114 TGAACGCTGTACGAATTTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067506.2 ENSRNOG00000048880 ENSRNOT00000074315 3 1 1 60 9 50005824 50005842 GATGGTACGGAGGATTGGG 60 50005782 50005802 ATTCCAAACTGTGACTCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064716.1 ENSRNOG00000028058 ENSRNOT00000034507 3 1 1 60 6 91581080 91581103 AGTATCTCTGGTATTGAAGAGGTG 60 91581043 91581063 TAAAGTGGGTCACTGTTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057747 ENSRNOT00000088773 3 1 1 60 7 114975602 114975621 GTTCTAGAGCTGGACATTGC 59 114975641 114975662 ATCCTTTCCTAGATTCCTTCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000061106 ENSRNOT00000078901 2 1 1 60 9 79578129 79578147 AGTTGGAATAGGAGCTTGC 58 79578171 79578189 TGGAGGTACTGCAATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057448 ENSRNOT00000083733 3 1 1 60 7 3870164 3870184 GTGATCTGACTGAGACATCTG 58 3870124 3870145 CAGATAAGCAGCTCAATCTTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013654.1 ENSRNOG00000061151 ENSRNOT00000072763 2 1 1 77 2 248579797 248579816 TCCCTGAAAGAATTCCAGGA 58 248579855 248579876 CCTGTGTTCTTTCTTGATTGCT 60 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000048338 ENSRNOT00000062639 3 1 1 60 9 30067749 30067767 CCCAATCTCGTCTGATCTC 57 30067789 30067809 TCCCATCCAAGTACTAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059325 ENSRNOT00000079105 2 1 1 82 7 135931708 135931726 CTTCTAGAGGCCTTGCAGG 60 135931644 135931663 GAGTGTGGACATAGCCTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054407 ENSRNOT00000085960 2 1 1 62 7 6637741 6637762 GTGTCACATGTAAATGACAGAG 58 6637781 6637803 GTTCATAGATCAGACACTGAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027387.1 ENSRNOG00000041434 ENSRNOT00000063187 1 1 1 67 17 27700540 27700558 ATCTCTGTGAGTTCGAGGC 59 27700589 27700607 TTTCTGTGTAGCCTTGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057412.1 ENSRNOG00000050895 ENSRNOT00000074506 2 1 1 62 7 70020530 70020549 AGTATTGGCCTTGGAGTCAG 60 70020487 70020505 CATGCATATTGGACGGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042669.1 ENSRNOG00000031076 ENSRNOT00000047925 2 1 1 60 19 2611358 2611376 AAGTACCACTTGCTCCTGG 59 2611316 2611336 AAATTCTCCACCAGATCTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058301.1 ENSRNOG00000031680 ENSRNOT00000051728 1 1 1 60 7 109411581 109411602 TGAAGAAACCTCATCGTTACAG 59 109411621 109411641 TGATAGCATCTGATTTCACGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000054659 ENSRNOT00000078118 1 1 1 60 4 9892053 9892074 GTTGTTCTTACATCAGTCAGGG 59 9892095 9892113 AAGCTAGGATGAGCAAAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000053870 ENSRNOT00000091353 3 1 1 70 7 107447956 107447978 TGATATGTCCTCTATCCAAGGAC 59 107447908 107447926 GCAGACTCCTATTCCAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054913 ENSRNOT00000084519 3 1 1 61 4 93769410 93769431 GGTATGTCAGTAGGAGGTAGAG 59 93769370 93769388 AGGACATCAGTGAGCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033540.1 ENSRNOG00000054029 ENSRNOT00000082485 3 1 1 80 11 26721285 26721305 ACAGACAGATAGACCAATGGA 58 26721221 26721245 CTCCTTTGTCAAACAAGTGAC 58 Novel Rattus norvegicus 81 SNORA11 ENSRNOG00000058707 ENSRNOT00000085194 1 1 1 61 7 97969706 97969724 GAGCAGAGGGCCTAAAGAG 60 97969663 97969682 TGGTCCCAGATTCTTCTTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061461 ENSRNOT00000081563 1 1 1 60 10 7300146 7300164 GTCCCTAGAGGTGTTGCAG 60 7300104 7300122 TTCTCTGCCACCTATCGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059708 ENSRNOT00000084832 1 1 1 60 4 67043334 67043352 GTGCTCAATTTGGCAACAC 59 67043292 67043311 GGCCATGCTAATCTTCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000052439 ENSRNOT00000083758 3 1 1 60 8 128807805 128807826 TTCCTACAACTTCTCAGAGTCC 59 128807847 128807865 TGTTTCCTGCATGGTTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021759.1 ENSRNOG00000023269 ENSRNOT00000039633 2 1 1 138 13 90059483 90059501 TGCTAAGAAGTTCGCAGAG 58 90059362 90059380 CATCTCTTCCTCAGGAGCT 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_10_0879.5 ENSRNOG00000051343 ENSRNOT00000076523 3 1 1 88 10 88079777 88084534 AACAAGGTGATGTAGGTCCC 60 88084584 88084603 AGAAAGACTGCTCAGTCCAC 60 Novel Rattus norvegicus 81 AABR07041724.1 ENSRNOG00000052130 ENSRNOT00000085536 3 1 1 62 X 137733209 137733228 CACAGAATTCCTCCCAAGAG 58 137733166 137733185 AAAGAAAGCAAGCCTTGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067300.1 ENSRNOG00000060645 ENSRNOT00000083847 1 1 1 60 9 38799993 38800012 GCTACCATGTGATTGAGCTG 59 38800033 38800053 TTGATGTCACTGTACTCATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041247.2 ENSRNOG00000032390 ENSRNOT00000040695 1 1 1 60 X 124107573 124107593 AGAGCACTACAAACATCACTG 58 124107533 124107551 ACACCTGTAACCTGAACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0890.5 ENSRNOG00000051024 ENSRNOT00000075953 2 1 1 149 10 89174623 89174641 GAACCTTTCTGCTGTGCTG 60 89174753 89174994 CGGCTGTAACGTAAAGAAGG 59 Novel InUTR Rattus norvegicus 81 SNORA17 ENSRNOG00000055366 ENSRNOT00000080513 3 1 1 61 1 177432150 177432168 GCTTCTGGTGTCACATGTG 59 177432107 177432125 ACCGAGCATGGACATAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034612 ENSRNOT00000052735 3 1 1 60 8 39196762 39196780 CCCGATCTTGTCTGATCTC 57 39196720 39196739 TCCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042326.3 ENSRNOG00000060421 ENSRNOT00000085101 2 1 1 60 X 152889429 152889447 CCAGAACCTTGGGAAATGG 58 152889469 152889489 GCTGGTTGATGGTTATAAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071935.2 ENSRNOG00000061441 ENSRNOT00000087364 1 1 1 60 X 157200724 157200743 CCACCATCAACAAGAATGCT 59 157200683 157200701 TTCTTTCGGATCATCTGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051373 ENSRNOT00000088296 2 1 1 60 13 30630881 30630900 CTCTACAGGCAAGGTAAGTG 58 30630840 30630861 TCTCTATGCCACCTACTAATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053734 ENSRNOT00000086034 1 1 1 60 8 75469071 75469089 ATGCCTGCCTTCTAGAACC 60 75469110 75469131 GCTGTACAGTAAGTGTTCTACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002384.2 ENSRNOG00000046037 ENSRNOT00000073243 2 1 1 82 1 72360923 72360943 AGACTGACAGAAACCTTCAG 57 72360860 72360880 ATTTGGGAGTTGTAGTATGGG 58 Novel Rattus norvegicus 81 AABR07025900.1 ENSRNOG00000049606 ENSRNOT00000074244 2 1 1 80 16 54608583 54608604 CCAAAGCAAACACTGAATATCC 58 54608648 54608667 AGTCTTCCAGCATCATGGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07036638.1 ENSRNOG00000056163 ENSRNOT00000079153 2 1 1 60 12 51273325 51273345 CTCTGTCCTTGACCTAATCTC 57 51273283 51273303 CCTAGCTGATAAGAAACAGCC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA33 ENSRNOG00000054517 ENSRNOT00000084929 1 1 1 60 1 22759974 22759993 CTAGTCTGCTTAGCTCTGTG 58 22760016 22760034 ATGGCGTTACTATTGCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035686 ENSRNOT00000053809 1 1 1 60 1 71911887 71911906 GAAGTTAAGCAGGGTCAAGG 59 71911928 71911947 CACCCAGTATTTCCAAGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066160.1 ENSRNOG00000056466 ENSRNOT00000078212 3 1 1 60 9 4107535 4107555 CTTTATTCAGGGATTCCTGGC 59 4107576 4107657 TTTGTATGACAGGGTCACAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07029933.1 ENSRNOG00000019814 ENSRNOT00000026813 2 1 1 80 10 60536729 60536751 GGAGGGCTCATCTATATTCCA 59 60536790 60536811 AGATGGAACCTTAAGGATGGAG 59 Novel Rattus norvegicus 81 U2 ENSRNOG00000060814 ENSRNOT00000083104 3 1 1 60 8 91751324 91751342 AGTTGGAATAGGAGCTTGC 58 91751365 91751384 TGGAGGTACTGCAATACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053088 ENSRNOT00000089896 2 1 1 82 8 48799220 48799238 GAGACAGAACTGCCTCCTG 60 48799156 48799174 TGTGTCATTCTTGTGCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070952.1 ENSRNOG00000051779 ENSRNOT00000079911 2 1 1 60 8 93161215 93161235 TCTCACAGAACTTGACTTTGG 58 93161175 93161194 CAGAAGAATCCAAACCTGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071243.1 ENSRNOG00000046364 ENSRNOT00000071769 3 1 1 98 8 106582010 106582028 GAACAACATGAGCCTCTGG 59 106581929 106581948 GTATCACCCAACCAGACAC 58 Novel Rattus norvegicus 81 AABR07024682.1 ENSRNOG00000055022 ENSRNOT00000080192 3 1 1 90 16 12123948 12124096 CAGACAAGAGTGAGAATGATTCTG 60 12123881 12123899 CCTAGCTTAACCACAGCCT 59 Novel Rattus norvegicus 81 Rn60_20_0066.11 ENSRNOG00000052039 ENSRNOT00000077198 3 1 4 85 20 4427797 4427815 AGTAAGGGAAGCGTCTCAG 59 4427012 4427030 GAGATCCGAGCTGAGAACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07007924.1 ENSRNOG00000052866 ENSRNOT00000083576 3 1 1 61 2 35185905 35185926 CTTCTGTTCCTGAGCATCG 58 35185951 35185969 GAGATGAGCAGGATCATGC 58 Novel DesignNoJunction Rattus norvegicus 81 AC128582.1 ENSRNOG00000051988 ENSRNOT00000091386 1 1 1 60 8 79862932 79862950 AACCAGTTCCACAAATGGC 59 79862890 79862911 ATTTGTATCTTTGTGACCAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044278.1 ENSRNOG00000049494 ENSRNOT00000071753 3 1 1 80 20 956122 956143 TGGTGACATATCTATTGGGCTC 60 956061 956081 ACATTGGAGACTGGAGTGG 59 Novel Rattus norvegicus 81 AABR07026359.1 ENSRNOG00000060898 ENSRNOT00000088219 3 1 1 80 16 73761623 73762935 ACAATTATTGCCGGAACCC 59 73762976 73762997 AATATTCCCATGTCAGCTTTCG 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000053407 ENSRNOT00000079708 1 1 1 60 3 114545477 114545497 TAGCCAATGAGGTTTATCCGA 59 114545437 114545455 AACACCAATGGCTTATGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000055360 ENSRNOT00000087882 3 1 1 120 3 15415343 15415361 CCACAGGTCAGGTACAGTG 60 15415241 15415260 GCTCCATTTACCTTCTCACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061411 ENSRNOT00000082625 1 1 1 60 3 109824084 109824104 GAGATGCCATGATGACAAAGG 60 109824044 109824064 ATCCTGAGAGCAATTGATGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031272.1 ENSRNOG00000051767 ENSRNOT00000078083 2 1 1 92 18 6828616 6829558 ATGGATGAACATTCGACTTCTG 59 6828545 6828564 ATCCAAACCAAGGTCCTCTG 60 Novel Rattus norvegicus 81 AC110682.1 ENSRNOG00000056669 ENSRNOT00000091392 3 1 1 83 18 8497668 8503629 TTCCTGGAACAGAGCACAG 60 8497603 8497622 AACTTTCCATTTCCAGGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AC114452.1 ENSRNOG00000054395 ENSRNOT00000079012 3 1 2 71 14 36596310 36596328 CAATGACTGTGCCTTGGTC 59 36590323 36590342 GTCCAATATTCTGCTCGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062672.1 ENSRNOG00000054436 ENSRNOT00000082812 2 1 1 66 6 2660339 2660932 CTTCACTCCTGCAATGAGC 59 2660291 2660311 TCCATCACTGCAAGATTTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07031388.1 ENSRNOG00000054849 ENSRNOT00000079904 1 1 1 80 18 12104431 12116525 CTTCCGAAGTTCACATGAGAG 59 12104371 12104390 TGACAATGTTGCTTACTGCT 58 Novel Rattus norvegicus 81 AABR07062751.1 ENSRNOG00000055921 ENSRNOT00000083431 3 1 1 76 6 6068239 6068257 CGTCTGAGAAACAGATGCC 59 6073978 6073997 CATAGAGCATTGCAGTTCAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07031399.1 ENSRNOG00000060341 ENSRNOT00000083236 2 1 1 128 18 12283736 12283754 CAAGGATGTGAAGTGGAGC 59 12227023 12227041 AGCAGGTAGTCATTCTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062758.1 ENSRNOG00000056625 ENSRNOT00000083746 3 1 1 81 6 6498724 6498743 ATCCTGTCACAGATGTCTGC 60 6498785 6499257 AGGAGATGCTTCATGACTGAG 60 Novel Rattus norvegicus 81 AABR07000200.1 ENSRNOG00000053182 ENSRNOT00000087887 1 1 1 80 1 4356401 4356419 GCTGGACTACTGTGGACTC 60 4328367 4356361 CCTTGTTCTTTGTCTCTAGACTG 59 Novel Rattus norvegicus 81 AABR07015399.1 ENSRNOG00000051674 ENSRNOT00000090450 1 1 1 80 14 53798633 53798655 CAGTACATCTTTACTACCACAGC 59 53798695 53806682 GCCATCACTCTACCTTCCT 59 Novel Rattus norvegicus 81 AABR07047103.1 ENSRNOG00000052266 ENSRNOT00000091908 3 1 1 81 5 19727956 19730870 CTCAACTATACAGAGTAGGCC 57 19727895 19727913 TTCAGAGGATCCACAGGAG 58 Novel Rattus norvegicus 81 AABR07047531.1 ENSRNOG00000060892 ENSRNOT00000079218 2 1 1 88 5 36692613 36692898 GAAGCCTGAAGATTTGCAC 57 36692543 36692561 TGATGGCCAGTTCATTCTC 58 Novel Rattus norvegicus 81 AC110488.1 ENSRNOG00000011990 ENSRNOT00000015955 1 1 1 62 5 57738134 57738153 GGGAAAGAAGAAAGGAAGGG 58 57730229 57730248 CTATGACATTGATGTGGCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07015846.1 ENSRNOG00000060138 ENSRNOT00000087729 3 1 1 82 14 80623858 80623876 AAGAGGAGAAGCAGAAGCA 59 80622959 80623815 ATCAGACATTTCTTCCATCTCC 58 Novel Rattus norvegicus 81 AABR07030351.1 ENSRNOG00000054174 ENSRNOT00000085242 1 1 1 82 10 82338507 82341074 AGAAACTCTACCTTGTCCCA 58 82341118 82341137 GGAATTGAACTGGAGTCCTC 58 Novel Rattus norvegicus 81 AABR07030363.1 ENSRNOG00000051683 ENSRNOT00000079789 2 1 1 80 10 82582209 82582405 ACCAACCATTCGTTGTTCTG 59 82582148 82582166 TGGACAGTAAGCCTTCAGG 59 Novel Rattus norvegicus 81 AABR07048139.1 ENSRNOG00000057107 ENSRNOT00000078497 1 1 1 88 5 64438021 64438039 GAAGCCAGGAAGGAGATGG 60 64438089 64440482 TTCTCGGGAACTATGATGTCC 59 Novel Rattus norvegicus 81 AC095078.2 ENSRNOG00000058506 ENSRNOT00000084174 3 1 2 80 4 117655197 117663063 CGTTGAAGACCTGAATCCAG 59 117655136 117655156 AAAGGATGATTCCAGAATCCG 58 Novel Rattus norvegicus 81 AABR07016545.1 ENSRNOG00000060432 ENSRNOT00000087724 1 1 1 112 14 102809494 102878625 CTGAAATGGCAGGATGCAG 59 102809400 102809418 GACAGACATGCCAAGTCCT 60 Novel Rattus norvegicus 81 AABR07016573.1 ENSRNOG00000054236 ENSRNOT00000083161 1 1 1 60 14 104764531 104768599 GGTGTTCTGCAAGCATCTC 59 104768623 104768641 GTAAGACGGCGGTAATGGT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07061541.1 ENSRNOG00000059365 ENSRNOT00000085264 2 1 1 61 4 132914657 132918153 CTCACTCAGGCTTCTGGAC 60 132918178 132918196 CCCTGTGATCTCATGTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030568.7 ENSRNOG00000059036 ENSRNOT00000079852 1 1 2 83 10 93205816 93206379 TGACGACTCTGGATGAAGC 60 93206423 93206444 CTTTCTCAGTGATCTCAATCCC 59 Novel Rattus norvegicus 81 AABR07048898.1 ENSRNOG00000056560 ENSRNOT00000091679 2 1 1 80 5 96243891 96244164 CCTACATGACTACTAGATGCAG 58 96242817 96242835 AACAACTCGTTTCTGTCCC 58 Novel Rattus norvegicus 81 AABR07061573.1 ENSRNOG00000055841 ENSRNOT00000085472 2 1 1 82 4 134096315 134096333 TCACAGGATAGCTGTGGTC 59 134096379 134101643 CGACAGACAGGAATCTTCG 58 Novel Rattus norvegicus 81 AABR07016731.1 ENSRNOG00000054144 ENSRNOT00000086364 3 1 1 91 14 113149806 113149979 CTTTAACCAGTGGCTTCGG 59 113150034 113150052 TGGTCTTACCTCTGCTGTC 59 Novel Rattus norvegicus 81 AABR07030657.1 ENSRNOG00000057482 ENSRNOT00000078974 2 1 1 100 10 97938023 97939315 TGACTATAGCTTGGCCTCG 59 97937941 97937959 GATGGATCTCCCGTCTCTG 59 Novel Rattus norvegicus 81 AABR07030657.1 ENSRNOG00000057482 ENSRNOT00000078974 3 1 1 107 10 97938022 97939314 GACTATAGCTTGGCCTCGG 60 97937933 97937951 GTTCCAGGGATGGATCTCC 59 Novel Rattus norvegicus 81 AABR07072439.1 ENSRNOG00000057904 ENSRNOT00000083952 3 1 1 85 15 4506499 4509496 AGGAGAAGGTGACTCATCC 58 4509545 4509563 TCATTACTGTCCCTCTCCG 58 Novel Rattus norvegicus 81 AABR07030714.1 ENSRNOG00000054938 ENSRNOT00000077545 1 1 1 81 10 101113035 101113053 TATCAGCCCAACAGGAGAG 59 101113094 101123579 CGAGGAGAAATAAGATACAGAGC 59 Novel Rattus norvegicus 81 AABR07062046.1 ENSRNOG00000057403 ENSRNOT00000084248 3 1 1 63 4 158762663 158791070 CAGAATCATTGCCAGGCTC 59 158791096 158791115 CAGGCTTTCTGATCATTCCA 58 Novel DesignRelaxed Rattus norvegicus 81 AC103292.1 ENSRNOG00000055109 ENSRNOT00000087363 3 1 1 84 4 159734355 159737088 CCAAGTGAAGAGCTTCCAC 59 159734289 159734307 CTTGGTAAAGGACCTGCTC 58 Novel Rattus norvegicus 81 AC118434.3 ENSRNOG00000055871 ENSRNOT00000081013 1 1 1 84 10 102765112 102766382 ACTGTGAGACCAAAGGGTG 60 102766428 102766448 TCTCTGGAAATCTAAGCAGCA 59 Novel Rattus norvegicus 81 AABR07030791.1 ENSRNOG00000052940 ENSRNOT00000090488 3 1 1 60 10 104820044 104820062 GACACAATTCCTGCTTCCA 58 104818622 104818641 CCAGGATGCATAAGTAGAGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07062111.1 ENSRNOG00000055644 ENSRNOT00000088127 2 1 1 61 4 161342599 161387684 TTTGACCAAGCACAAGCTC 59 161387709 161387727 CAATACTGCTCTGAGCCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07062112.2 ENSRNOG00000058933 ENSRNOT00000084779 3 1 1 73 4 161527283 161527301 GTTCACAGAGGCTCTTTCC 58 161519855 161519873 CTTCGAAGTTTCAGCCAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07017208.2 ENSRNOG00000061006 ENSRNOT00000090768 2 1 1 80 15 17937279 17944376 CTATGACAGGATTGTGCTTCG 59 17944417 17944436 TTCTGAAAGTCAAAGACGCC 59 Novel Rattus norvegicus 81 AABR07049510.1 ENSRNOG00000052641 ENSRNOT00000083989 1 1 1 80 5 125069359 125070162 CCTTCCAGAACTGAGTCCT 58 125070206 125070224 TTTGGAGGTTCTGATGCAC 58 Novel Rattus norvegicus 81 AABR07001210.1 ENSRNOG00000057057 ENSRNOT00000086932 1 1 3 83 1 38882295 38882313 TTCAGGTCTGACAACACTG 57 38864918 38882248 TTCCATGGAACGAAAGGTG 58 Novel Rattus norvegicus 81 AABR07001210.1 ENSRNOG00000057057 ENSRNOT00000088504 1 1 3 136 1 38842215 38859595 GAAAGCATGCATGAGTATCC 57 38842098 38842117 TGTACATCAGCATTTAGGCA 57 Novel Rattus norvegicus 81 AABR07017268.1 ENSRNOG00000055328 ENSRNOT00000091841 2 1 2 80 15 20340939 20341993 ACTGTATACTGTGGGTTTGGT 59 20342035 20342053 CGATGGTAGGTCTGAGCAG 60 Novel Rattus norvegicus 81 AABR07017626.1 ENSRNOG00000058996 ENSRNOT00000084265 2 1 1 87 15 29388297 29388315 TCATGCAGAGGGACAAGTG 60 29388007 29388246 TGGGCCACAATACATCCAG 60 Novel Rattus norvegicus 81 AABR07017716.1 ENSRNOG00000053509 ENSRNOT00000086032 3 1 1 91 15 30343238 30343479 TTTGTCTGGATGTATTGTGGC 59 30343167 30343185 ATGAACAGTCCAGGGTGAC 59 Novel Rattus norvegicus 81 AABR07062535.2 ENSRNOG00000056757 ENSRNOT00000091613 3 1 1 60 4 181524203 181524896 AGCCAGAACCTCTACATCC 59 181524161 181524179 CACAGTTCTTGTAGTGCCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07017814.1 ENSRNOG00000058542 ENSRNOT00000089808 1 1 1 80 15 31308673 31308817 ATACATTATTTCCTGGGAGGTG 58 31308857 31308876 GGAGTCTCCTTCAAAGACAG 58 Novel Rattus norvegicus 81 AABR07062544.1 ENSRNOG00000053068 ENSRNOT00000080067 1 1 1 62 4 182329579 182329599 GAGATAGAGAAGTGGGAAGGA 58 182329623 182330269 TGCCTTCTGTCTTCTGGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049815.1 ENSRNOG00000054075 ENSRNOT00000083167 2 1 1 81 5 139265908 139265930 CTGAACCTTCTACATTAGTCGTC 59 139265342 139265868 CACGAACTTCCCTTGTTCTC 59 Novel Rattus norvegicus 81 AABR07001555.1 ENSRNOG00000060475 ENSRNOT00000082248 2 1 1 91 1 51525306 51525324 TTCACCATTTGCGGAACAC 59 51525081 51525251 CATCCATCTTGTCTGCTGC 59 Novel Rattus norvegicus 81 AABR07031952.1 ENSRNOG00000060469 ENSRNOT00000087148 2 1 1 82 18 40397747 40397769 AAAGGACGAGATGATCTACTACC 59 40300864 40397705 ATCTTGTCAGTGCCCAGTC 60 Novel Rattus norvegicus 81 AABR07050134.1 ENSRNOG00000057126 ENSRNOT00000087947 1 1 1 62 5 153015118 153015136 AATCGACATCTCCTGTGTC 57 153014606 153014624 CAGACCTCACCAAATTCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001762.1 ENSRNOG00000061057 ENSRNOT00000087311 2 1 1 76 1 56541446 56541464 AAGATTCTCGGCTCACCTG 60 56539474 56541406 AAACTATGACTTCTGCCGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063601.2 ENSRNOG00000052821 ENSRNOT00000081713 2 1 1 60 6 36846743 36855873 AACAGCACTGTTGACAGGT 60 36855896 36855915 TCCATTAAATGTCGCAGGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063640.1 ENSRNOG00000056065 ENSRNOT00000080003 2 1 1 129 6 38807587 38807605 GTTTGTTCTTGGAGGGCAG 59 38806293 38807495 TTTGTCTTTGTGGTTGAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AC098462.3 ENSRNOG00000058214 ENSRNOT00000088236 2 1 1 80 1 63301741 63315765 CCTAGTATCACAGCGTCTGG 60 63301680 63301700 GCACCAATAGCTGTAATCTGG 59 Novel Rattus norvegicus 81 AC107274.1 ENSRNOG00000058091 ENSRNOT00000088210 3 1 1 88 18 57896933 57896951 TGCTCCATAAGAGTCAGCC 59 57885901 57896881 TCCAAAGCTATGTTGGCGA 60 Novel Rattus norvegicus 81 AABR07050415.1 ENSRNOG00000055071 ENSRNOT00000078178 2 1 1 80 5 164240321 164240339 TTAAGCTGCAGTTGCTGTG 59 164235714 164240279 GCCAAATATCATGGGTTCTGG 60 Novel Rattus norvegicus 81 AABR07018349.1 ENSRNOG00000058454 ENSRNOT00000079047 3 1 1 89 15 53495860 53495878 CATCCAGACTCCTCAAGGG 59 53495289 53495810 CTACTACCCATTAGAGTGGTGG 60 Novel Rattus norvegicus 81 AABR07002262.2 ENSRNOG00000061569 ENSRNOT00000090639 2 1 1 80 1 70290398 70297318 CTTCCTAGGTACCAGTTCCC 59 70297361 70297379 ACTGTCTTCCTCTGTTGCT 59 Novel Rattus norvegicus 81 AABR07018456.1 ENSRNOG00000058117 ENSRNOT00000086799 1 1 1 80 15 58667351 58668935 TCACAGTGAAGGCTCACAG 60 58667289 58667308 GCAGTTGTCAGTTTGAAGGT 59 Novel Rattus norvegicus 81 AABR07063740.1 ENSRNOG00000052618 ENSRNOT00000077838 3 1 1 81 6 44586745 44614720 CCACAGCTTTACAAGTGGC 60 44614764 44614783 GTCAGGATTGCCACAATCAG 59 Novel Rattus norvegicus 81 AABR07050487.1 ENSRNOG00000054768 ENSRNOT00000087028,ENSRNOT00000091421 2 2 2 93 5 167072664 167072682 CAGAATCTGGAAGCCAAGG 58 167081099 167081117 AAGTTGTTTGTCTGGACGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07018503.2 ENSRNOG00000058815 ENSRNOT00000084849 3 1 1 83 15 62248565 62248585 TCAATCAAAGACCACCTTCCA 60 62232226 62248520 TTCTCTGAGCCAAGAGGTG 59 Novel Rattus norvegicus 81 AABR07051250.2 ENSRNOG00000061542 ENSRNOT00000090507 3 1 1 87 3 3492162 3492180 ATTGAGACAGACCACAGCA 59 3489163 3489181 TTCTTCTGAGCTCCAGGTC 59 Novel DesignNoJunction Rattus norvegicus 81 LOC102548225 ENSRNOG00000053223 ENSRNOT00000084356 3 1 1 67 18 71885830 71885848 TTCAAGGAACTTTGGCCGA 60 71886821 71886839 CTCAACCAGTGTGAGGGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07019099.1 ENSRNOG00000057030 ENSRNOT00000080719 3 1 1 83 15 89029791 89030248 TCTAAAGCACATTTGGGTTTGG 60 89029729 89029753 GTCTGAGTAGATTCTCAAACTTTGG 60 Novel Rattus norvegicus 81 AABR07019116.2 ENSRNOG00000058401 ENSRNOT00000087558 3 1 1 80 15 89807759 89807778 GGAAGAATCATGGCATCTCC 59 89806957 89807716 TTTGCTTCTTCCACTGCAG 59 Novel Rattus norvegicus 81 AC126134.1 ENSRNOG00000060916 ENSRNOT00000078700 3 1 1 82 3 5584207 5584229 CTCAACTGGATCTATTCAGAGGA 59 5584271 5584606 GGTCACAGCTACCTTCCAG 60 Novel Rattus norvegicus 81 AABR07051370.1 ENSRNOG00000052882 ENSRNOT00000080029 1 1 1 60 3 6809814 6809835 CTCTGATTTATAAAGTCAGCGG 57 6809143 6809161 ACATGCCCTAGGTACATGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032747.1 ENSRNOG00000058730 ENSRNOT00000077102 2 1 1 110 18 78944654 78944672 ACAAGATACACCCAGGCAC 60 78941246 78944581 AGAGAAAGGTAACCGTTCCC 60 Novel Rattus norvegicus 81 AABR07019306.1 ENSRNOG00000059549 ENSRNOT00000080938 3 1 2 84 15 98620280 98620298 TATGCAGAGTTGTGCTGGA 59 98620340 98620471 GGATTCCTTTACCTTACTTTACTCC 59 Novel Rattus norvegicus 81 AABR07019306.1 ENSRNOG00000059549 ENSRNOT00000088090,ENSRNOT00000080938 3 2 2 94 15 98619330 98619349 ATAACTGTAGCTTGCGAGCT 60 98620276 98620294 GCACAACTCTGCATAGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032758.2 ENSRNOG00000057736 ENSRNOT00000088438 2 1 1 81 18 80209712 80209732 TTCTATATCTGCCCAGAACAG 57 80209775 80212455 TTTACAGCAGGATCCTGGA 58 Novel Rattus norvegicus 81 AABR07032787.1 ENSRNOG00000052546 ENSRNOT00000088794 3 1 1 81 18 82089109 82108783 GTAACTGTTGACCTCTACTGTC 58 82108824 82108843 CTCTAGATGGACTCCATCCA 58 Novel Rattus norvegicus 81 AABR07051515.2 ENSRNOG00000059518 ENSRNOT00000088402 1 1 1 90 3 14699896 14705331 ACTCACTGATTTGATGTGGC 59 14705384 14705402 GTCATTCTTCCACTGCGTC 59 Novel Rattus norvegicus 81 AABR07019435.1 ENSRNOG00000055868 ENSRNOT00000080782 3 1 1 81 15 105341802 105349728 AATGACCAGTTCATTCCACC 58 105341740 105341758 TTGCCATTCCATTCCAGAC 58 Novel Rattus norvegicus 81 AABR07064681.1 ENSRNOG00000056704 ENSRNOT00000079944 2 1 1 95 6 90259918 90259936 ACTCCACTGTCAGTCAAGC 60 90255951 90259861 AGGAGTTCTGCTTAGTACCAC 59 Novel Rattus norvegicus 81 AABR07071904.1 ENSRNOG00000052237 ENSRNOT00000077787 2 1 1 81 1 94836399 94836419 AACCACAAAGGACATTTGTGG 60 94836460 94837410 CCTTCAGGTCTGCTTTAACAC 59 Novel Rattus norvegicus 81 AABR07003051.1 ENSRNOG00000058448 ENSRNOT00000089360 2 1 1 88 1 95240940 95240958 CAACAATGACAACAGCAGC 58 95241010 95241716 TCTTGGGTCCAAGATAGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051787.1 ENSRNOG00000059243 ENSRNOT00000084727 1 1 1 80 3 21379340 21379359 GGTCCCATCTGGATGAAGAG 60 21375982 21379298 CCTTCAGAGTCATCTTCCCA 59 Novel Rattus norvegicus 81 AABR07051954.1 ENSRNOG00000053600 ENSRNOT00000077240 1 1 1 95 3 30111698 30111716 ATTCATGTGAACCCTCACG 58 30111775 30111917 AAGTCCGAGCCAAATTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC127764.1 ENSRNOG00000054104 ENSRNOT00000085099 1 1 1 90 13 47203782 47203802 AGTATTCTCTACTCCAGTGGA 57 47202588 47203730 CATATAGCGGACACCTGTG 58 Novel Rattus norvegicus 81 AC127764.1 ENSRNOG00000054104 ENSRNOT00000085099 2 1 1 91 13 47203782 47203803 TAGTATTCTCTACTCCAGTGGA 57 47202588 47203730 CATATAGCGGACACCTGTG 58 Novel Rattus norvegicus 81 AABR07065257.1 ENSRNOG00000057804 ENSRNOT00000083197 1 1 1 60 6 117418999 117419019 CACTTATTGTCTTGTGTAGCC 57 117418162 117418977 GTCTTCCCACTTTCTCCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052327.1 ENSRNOG00000054061 ENSRNOT00000078922 1 1 1 95 3 47689080 47689098 TAGCTGCTCTTAGCAAGCT 59 47689156 47690627 CTTCTTGATCTCACGCTGAC 59 Novel Rattus norvegicus 81 AABR07021411.1 ENSRNOG00000052592 ENSRNOT00000090948 2 1 1 109 13 70830891 70832262 AGATGATGGTTCTCCAGACG 59 70830801 70830822 CGACATACTTGTTTAAGACGGG 60 Novel Rattus norvegicus 81 AABR07033925.1 ENSRNOG00000056146 ENSRNOT00000088159 2 1 2 80 11 44736638 44753146 AGCTCCTGAAGAGAAAGCTG 60 44736577 44736597 ATGACATCCCAAATGTTGAGC 59 Novel Rattus norvegicus 81 AABR07003699.1 ENSRNOG00000053358 ENSRNOT00000090501 2 1 1 93 1 117630900 117630918 CATGAAGACAAGCCCATCC 59 117629627 117629647 CTCCGTATTGTCTAGAAAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052529.1 ENSRNOG00000061018 ENSRNOT00000079761 1 1 1 84 3 60249830 60252014 AGAAGAACACATACAGGTGAG 58 60249766 60249784 TATGTTTGGCAAGGTGGTC 58 Novel Rattus norvegicus 81 AABR07052550.1 ENSRNOG00000051466 ENSRNOT00000091599 2 1 1 64 3 61124873 61124894 CCAGTTCAAACATGTGTAACGA 60 61124919 61125089 CCTGGAGTTCTTGTCCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021612.1 ENSRNOG00000054298 ENSRNOT00000087910 3 1 1 80 13 81482935 81507639 ATCAGCCTCAGTCCTTAAGG 59 81507679 81507700 ATACATGATGTCTACCAATGGC 58 Novel Rattus norvegicus 81 AC133316.2 ENSRNOG00000051766 ENSRNOT00000078920 2 1 2 91 6 127193067 127199439 GTACAACAGGAGGAAGTTGG 58 127192995 127193013 CACCAGACTTGTCCATGTG 59 Novel Rattus norvegicus 81 AC133316.1 ENSRNOG00000051541 ENSRNOT00000084878 2 1 1 102 6 127258268 127259508 TACTTCAGGAAGGCCAGAC 59 127262131 127262153 GTGGTCTCTGCTTTCTTATTCTC 59 Novel Rattus norvegicus 81 AABR07034598.1 ENSRNOG00000058711 ENSRNOT00000088004 1 1 1 72 11 80630348 80630366 TCACAGGTGCAGAAAGGAG 60 80633032 80633050 GTTCCAGTGCAATCCAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07004101.2 ENSRNOG00000060733 ENSRNOT00000088675 3 1 1 65 1 124929436 124929454 AAAGTACACATGGGACGTG 58 124929126 124929407 AACAACCTTGTTCTCAGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052639.1 ENSRNOG00000057160 ENSRNOT00000090066 1 1 1 84 3 67414432 67414451 ACCTGATGTGACTTTGAGCA 60 67414498 67414757 TTCCGTTGTGTCCTCTTCC 60 Novel Rattus norvegicus 81 AABR07065465.1 ENSRNOG00000056509 ENSRNOT00000083321 1 1 1 96 6 129951261 129951285 GGAGGAATATCAAGAGGTTTAAGAG 59 129949470 129951207 TGAAGAGCTTGTGGTCCTG 60 Novel Rattus norvegicus 81 AABR07065465.1 ENSRNOG00000056509 ENSRNOT00000083321 2 1 1 97 6 129951261 129951285 GGAGGAATATCAAGAGGTTTAAGAG 59 129949469 129951206 GTGAAGAGCTTGTGGTCCT 60 Novel Rattus norvegicus 81 AABR07065476.2 ENSRNOG00000061068 ENSRNOT00000088039 1 1 1 60 6 130187199 130187218 AACAGTTGGTAGACAGTCCC 59 130186713 130186731 ACATGATTTGCTCTGGAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065486.1 ENSRNOG00000060055 ENSRNOT00000088443 2 1 1 80 6 130796921 130797529 CTGAGAACTCAACTCCTGC 58 130797571 130797591 ACAGCCAATTCTTCAGATAGG 58 Novel Rattus norvegicus 81 AABR07021888.1 ENSRNOG00000061007 ENSRNOT00000082330 1 1 1 80 13 96756433 96756452 GATCTGCAACTCATTCACCA 58 96756494 96757885 TTCAGCAAAGACATACTGGG 58 Novel Rattus norvegicus 81 AABR07052730.2 ENSRNOG00000053273 ENSRNOT00000086513 1 1 1 82 3 71097719 71099278 CTACTAAATATGTTCCAGGTGTTGG 60 71097661 71097683 GGCTCAATAGAACTGATGAACTG 60 Novel Rattus norvegicus 81 AABR07004221.2 ENSRNOG00000057208 ENSRNOT00000081129 1 1 1 80 1 130547677 130547696 GGGAGAACCATAGTAGAACG 57 130544483 130547635 CTTGATTTCCAGGAATCGGT 58 Novel Rattus norvegicus 81 AC121220.1 ENSRNOG00000058990 ENSRNOT00000089556 3 1 1 88 6 135259894 135259912 TGTAACGCTAGTTGGAGCC 60 135259959 135262765 CTGGAGACTTAAATTACACAGCAG 60 Novel Rattus norvegicus 81 AABR07021996.1 ENSRNOG00000051880 ENSRNOT00000082633 3 1 1 80 13 101956922 101958374 TCTCTAGCAATGTGATGTACCA 59 101958413 101958433 CTGGAAAGGACTGGATAATGC 59 Novel Rattus norvegicus 81 AABR07065601.1 ENSRNOG00000051890 ENSRNOT00000083112 3 1 1 81 6 136942519 136942540 GGTGATTCTGTCTTTGTTAAGG 57 136942581 136942760 TCATCCTAGAAGTTGCTGGA 58 Novel Rattus norvegicus 81 AABR07065602.2 ENSRNOG00000056047 ENSRNOT00000087717 1 1 1 111 6 137122255 137122273 CAGGTCTCCTCCAAGTGTC 59 137121519 137121537 CAGAGTTCTCAACTTGCGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052897.3 ENSRNOG00000060635 ENSRNOT00000092216 3 1 2 85 3 83134277 83134295 GAGTGACTACCCAAGGGAG 59 83111299 83134233 CTTATGAAACCTGGAAATCCTGAG 60 Novel Rattus norvegicus 81 AABR07052897.2 ENSRNOG00000056421 ENSRNOT00000083244 3 1 1 82 3 83146337 83146358 ATCTGCTAGTCAACTCAAAGGT 60 83146176 83146294 ACTCCAAGGGTTGTCTTGG 60 Novel Rattus norvegicus 81 AABR07004269.2 ENSRNOG00000051426 ENSRNOT00000089401 1 1 1 94 1 134951534 134951724 TTTCCAATCTGGAGAAAGGG 58 134951459 134951477 AAACAAGTGCCTGGAAGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065883.1 ENSRNOG00000052278 ENSRNOT00000081721 2 1 1 80 6 143599303 143605627 AACTGATGGTGTCTACTCCC 59 143599242 143599262 AGAAGTTTCACTGAAGACCCA 59 Novel Rattus norvegicus 81 AABR07024491.1 ENSRNOG00000055392 ENSRNOT00000083207 1 1 1 80 16 1456843 1456861 TGGATCCTGAAATGCATGC 59 1455308 1456800 AAGAGGCTATGTAGGCAAGG 59 Novel Rattus norvegicus 81 LOC102548818 ENSRNOG00000056324 ENSRNOT00000079908 2 1 2 60 1 141944115 141944133 AGTGGCCTTGTAAACCCTC 60 141944870 141944889 AATTGTTGAGCATGAACACG 58 Novel DesignNoJunction Rattus norvegicus 81 AC126572.4 ENSRNOG00000059466 ENSRNOT00000086870 3 1 1 111 12 13210913 13210931 CAACTGAGGACCCAGAGTC 59 13211003 13212067 GGCAAACAAGAAACAAATGGAG 59 Novel Rattus norvegicus 81 AABR07024641.1 ENSRNOG00000055192 ENSRNOT00000081730 1 1 1 89 16 9896254 9896272 GAGTGAGAGTGACTGGGAG 59 9898030 9898048 CTATCTCAGGAGACTCGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035561.3 ENSRNOG00000058864 ENSRNOT00000079265 1 1 1 60 12 19705859 19705879 CACCACAGAAGATAGGAAGAG 58 19705901 19705919 ATGGACGATGGAGAGTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004572.1 ENSRNOG00000054930 ENSRNOT00000084334 3 1 1 85 1 147696947 147696966 TGATTGATCACGGAGAGGAG 59 147697013 147697992 GATCTGTTCATCACCAAGGC 59 Novel Rattus norvegicus 81 AABR07024799.3 ENSRNOG00000060232 ENSRNOT00000087217 2 1 1 93 16 17223712 17237469 TCTTGCAAACAGAGCACAG 59 17223637 17223655 GACTTGGAGGACACATGAC 58 Novel Rattus norvegicus 81 AABR07024802.1 ENSRNOG00000051830 ENSRNOT00000077235 1 1 1 80 16 17435903 17456244 AGGAAGATAAGTCTTGACTCAG 57 17456285 17456303 ACCTGTTGAAGTGGAAGTG 58 Novel Rattus norvegicus 81 AABR07066828.1 ENSRNOG00000056706 ENSRNOT00000086341 2 1 1 80 9 18085968 18098663 GTTCTGCCCTAAAGGAGCA 60 18098703 18098725 CTCTCCAATAAAGCTCTACACTG 59 Novel Rattus norvegicus 81 AABR07035778.2 ENSRNOG00000055080 ENSRNOT00000085667 1 1 1 80 12 22297384 22298017 GACCATGTCGGGTATTGCT 60 22298060 22298079 GGACAGTAAGTACAGCAGGG 60 Novel Rattus norvegicus 81 AC133383.1 ENSRNOG00000060876 ENSRNOT00000084549 1 1 1 84 1 162733388 162733670 GGGATAGTTTCTGATTCTTGGA 58 162733715 162733733 CTTTGCTCATGTACAGCAC 57 Novel Rattus norvegicus 81 AABR07025152.1 ENSRNOG00000054002 ENSRNOT00000086692 3 1 1 60 16 29984016 29993403 TGGGATGCTTTCAATACTGAC 58 29983976 29983997 CACTTAACTCCTTTCTCCAAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053870.1 ENSRNOG00000058774 ENSRNOT00000086934 2 1 1 80 3 131609592 131609610 GAACATCTGACACCAGCCT 60 131609652 131639446 GTGTCAATTTCTCTGTCTGCC 60 Novel Rattus norvegicus 81 AABR07035835.1 ENSRNOG00000054158 ENSRNOT00000085474 1 1 1 80 12 24447292 24447312 GAAACCACTACAAACCATAGC 57 24442995 24447251 CAGCTAGAGTCACCTTATCG 57 Novel Rattus norvegicus 81 AABR07067036.1 ENSRNOG00000059635 ENSRNOT00000078358 3 1 1 145 9 27326026 27326044 CATCCAGAGAAGCGGAGAG 60 27325778 27325796 GAGTCCCATCCTCTGACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07025303.1 ENSRNOG00000059212 ENSRNOT00000079403 1 1 1 80 16 32656089 32656107 ACCACATCTCAGAAAGTGG 57 32656148 32656307 CCATTAAATCTGGAACCAACAC 58 Novel Rattus norvegicus 81 AABR07053885.1 ENSRNOG00000056548 ENSRNOT00000089258 1 1 1 89 3 132532302 132535271 AAGTGCAAGGATGATGACAG 58 132532232 132532250 TCTGTACTCGGAACAAGGG 59 Novel Rattus norvegicus 81 AABR07025385.1 ENSRNOG00000054260 ENSRNOT00000077277 1 1 1 80 16 36260082 36261500 CACATCAGGACATTATTCACTCAG 60 36260025 36260046 TTCAAACATATCAGCTTCAGGG 59 Novel Rattus norvegicus 81 AABR07067210.1 ENSRNOG00000053227 ENSRNOT00000079131 1 1 1 83 9 35148341 35148360 GAGCAGCAAAGTTGATTGTG 58 35148402 35150104 CCCATGGATACTCATCATATCTG 58 Novel Rattus norvegicus 81 AABR07054025.1 ENSRNOG00000052276 ENSRNOT00000085307 2 1 1 80 3 136596730 136596748 AATCTCCTTCTCCCAGGGA 59 136596226 136596687 GAAGTTGTCAGTCCAGTCCT 59 Novel Rattus norvegicus 81 AABR07025594.1 ENSRNOG00000060299 ENSRNOT00000080438 2 1 1 81 16 41038165 41038186 TGATGGTAAGAGATGTCAGACG 60 41038228 41039868 CATGTGACTTGCTCGTCTG 59 Novel Rattus norvegicus 81 AABR07025594.1 ENSRNOG00000060299 ENSRNOT00000080438 3 1 1 82 16 41038164 41038185 GTGATGGTAAGAGATGTCAGAC 58 41038228 41039868 CATGTGACTTGCTCGTCTG 59 Novel Rattus norvegicus 81 AABR07036024.1 ENSRNOG00000052944 ENSRNOT00000081483 2 1 1 81 12 30946798 30948807 TGACGGGAGGTCTTAAACC 59 30948852 30948870 GAGAGCAGGCAGATATCGG 60 Novel Rattus norvegicus 81 AABR07054315.1 ENSRNOG00000061670 ENSRNOT00000090434 1 1 1 80 3 147501125 147501715 CCAGAACACAGAAAGTGGG 58 147501757 147501777 TGTACAATGCCCTTTATGGTG 59 Novel Rattus norvegicus 81 AABR07036089.1 ENSRNOG00000055993 ENSRNOT00000086585 3 1 1 82 12 34225972 34231594 CTGATACCCAAGCTGTCTC 57 34231638 34231658 CCACTCAAACTGAAGTTTCTC 57 Novel Rattus norvegicus 81 AABR07054352.3 ENSRNOG00000053808 ENSRNOT00000086150 3 1 1 65 3 149259514 149259533 CTTCGCCTAGGACTACAGTG 60 149258211 149259489 CTTGAGTGTCCTTCTTATTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07005779.4 ENSRNOG00000056571 ENSRNOT00000085384 1 1 1 88 1 198168211 198168229 CAGTCTACACCGTACTCCC 59 198164647 198168160 CTTTCTGACCATGTGATGCC 59 Novel Rattus norvegicus 81 AABR07005779.3 ENSRNOG00000054961 ENSRNOT00000086620 1 1 1 60 1 198242637 198242655 TTAGTCAGAGCATTTGCCC 58 198242595 198242613 TAACTGGAGTCACCGAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054437.1 ENSRNOG00000055407 ENSRNOT00000082230 1 1 1 80 3 153830442 153830462 TCAGAGACTCAGATTCACTCC 59 153830155 153830401 GTCACATTGTACCTCAAGGC 59 Novel Rattus norvegicus 81 AABR07054445.1 ENSRNOG00000054537 ENSRNOT00000089702 2 1 1 60 3 153935313 153935331 ACGTAGACAGAGACAAGGC 59 153934277 153934295 TGGATTGTTGCCACTTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07067491.2 ENSRNOG00000060268 ENSRNOT00000089530 2 1 1 61 9 49134035 49134053 AAGAAGACACATCAAGCCA 57 49134078 49135004 GAAGCTGTTGAGATCTCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054488.1 ENSRNOG00000059124 ENSRNOT00000082984 2 1 1 80 3 156426590 156453264 AGAGTGTACTATGACCCTTCC 58 156426530 156426548 ATGTGGAGGTAGGAACTGG 58 Novel Rattus norvegicus 81 AABR07067742.1 ENSRNOG00000061465 ENSRNOT00000089343 2 1 1 84 9 60370919 60372314 TTCTCCAAATACAAGTCCCAG 58 60372359 60372378 GAATTGGCAGTCACAAATGG 58 Novel Rattus norvegicus 81 AABR07036413.2 ENSRNOG00000057715 ENSRNOT00000080265 3 1 1 66 12 42566880 42566898 GATGAAGGAGCGATGTCTG 58 42568532 42568550 GGAAGAACAAAGGCTTGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07036426.1 ENSRNOG00000057983 ENSRNOT00000080357 2 1 1 60 12 42899758 42902405 GGGAATCCCAAAGTAACAGAC 59 42899718 42899737 TTGGATTATTGCGGATGGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026143.1 ENSRNOG00000051381 ENSRNOT00000077335 3 1 1 88 16 65369848 65369866 AGACGGAGTTTGTATCGCA 59 65369283 65369302 TCGTAATCTACCTCAGGACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026144.1 ENSRNOG00000052907 ENSRNOT00000079928 2 1 1 80 16 65430056 65521970 CTAAGATCCTTTCAAGCCCA 57 65522013 65522031 ACAGAAGACTGTCCAACTG 57 Novel Rattus norvegicus 81 AABR07067791.1 ENSRNOG00000055231 ENSRNOT00000082250 2 1 1 88 9 64218409 64222777 GTATTGTACTGGAGTACATTGTACG 60 64218345 64218363 CAGGAGACTGACGACTACC 59 Novel Rattus norvegicus 81 AABR07026246.1 ENSRNOG00000060471 ENSRNOT00000083782 3 1 1 61 16 69570508 69570527 AATGCTTGGGTTAACTACCA 57 69571377 69571395 CCTCTTCCTCTTCCTCCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07067852.1 ENSRNOG00000061019 ENSRNOT00000085370 2 1 1 80 9 67817149 67817167 AAGTGCAGTCACTGTTACG 58 67817210 67824364 CATAGCCAGTTCCTTGTCAG 58 Novel Rattus norvegicus 81 AABR07006038.2 ENSRNOG00000061253 ENSRNOT00000088263 2 1 1 89 1 214974848 215004920 TATCAAAGGAAACGCAAGGA 58 214974778 214974796 CAACATGCTCTGGAGACAG 58 Novel Rattus norvegicus 81 AABR07054662.2 ENSRNOG00000058272 ENSRNOT00000090077 3 1 1 90 3 166293872 166295904 GAACCAACAGATGTGAGGAG 58 166293801 166293819 CAATTCCACGATGTCACCC 59 Novel Rattus norvegicus 81 AABR07054755.2 ENSRNOG00000060549 ENSRNOT00000080717 2 1 1 80 3 168785840 168787679 GACCACTGTATAAAGAACACCA 58 168785781 168785801 CTAAATCTTTGCTCCAGTCCA 58 Novel Rattus norvegicus 81 AABR07026473.1 ENSRNOG00000057840 ENSRNOT00000085640 2 1 1 95 16 77995695 78013010 TCCTTTCTGCAGAGCTGAG 59 78013068 78013087 TTGTTGTCGTACTCTGAGGG 60 Novel Rattus norvegicus 81 AABR07006263.1 ENSRNOG00000056620 ENSRNOT00000089237 1 1 1 60 1 227289073 227290251 CGGCAATCCAGATCATGTG 59 227290274 227290293 ACTGATGCCAGAATGATTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07006428.1 ENSRNOG00000055431 ENSRNOT00000079050 1 1 1 60 1 233254966 233254985 GGGCACTTCATATCCAAACC 59 233254925 233254944 ACTGTTTCTGAGGAAGAAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068222.1 ENSRNOG00000055585 ENSRNOT00000080946 3 1 1 82 9 91414738 91414858 CCTAAGATTACAGAAAGAAGAGGG 59 91414679 91414698 AAACAAGAGCTTCACAACCA 58 Novel Rattus norvegicus 81 AABR07006656.2 ENSRNOG00000055788 ENSRNOT00000082007 3 1 1 80 1 244800242 244800261 TCATAGGCTTCTGTCTTTGC 58 244799108 244800199 GAGTTTCTTGACCAGTGGT 57 Novel Rattus norvegicus 81 AABR07006656.3 ENSRNOG00000057920 ENSRNOT00000086100 1 1 1 61 1 244877738 244907923 TTGCAGAATCCTCCCAGTG 60 244907943 244907966 CTCCTGTTGCTGTTAAAGAATAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07068350.1 ENSRNOG00000057530 ENSRNOT00000088137 2 1 1 80 9 100261101 100261119 TGAACCTTTCCCGATACGG 60 100259630 100261058 ATGCCTTTCCAAGCAAACAG 60 Novel Rattus norvegicus 81 AABR07026704.1 ENSRNOG00000053217 ENSRNOT00000083978 2 1 1 84 16 90280281 90282431 GGGAGGAAGTTATAATGTACAAGC 59 90280220 90280238 TGTGTAAACCATGGGTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026912.2 ENSRNOG00000060172 ENSRNOT00000092050 3 1 1 114 17 4567803 4568078 CAAAGATACAACGAAGCGAG 57 4568152 4568173 ACTCACCTTCATCTTCTTTCTG 58 Novel Rattus norvegicus 81 AABR07026921.1 ENSRNOG00000053032 ENSRNOT00000083367 2 1 1 87 17 4896679 4920868 TGACTAATGGAACTTCCCAG 57 4920918 4920936 AATATTCCACTCCGATGGC 57 Novel Rattus norvegicus 81 AABR07056390.2 ENSRNOG00000056699 ENSRNOT00000077294 1 1 1 80 7 23246524 23246547 CGATTGACTACCTATATTCACCAC 59 23183847 23246491 CATCTCCTTTATCATAGATGTTGGG 59 Novel Rattus norvegicus 81 AABR07026972.1 ENSRNOG00000056679 ENSRNOT00000079209 3 1 1 92 17 7966506 7966524 GTCTCCTCAGGAACCTCAG 59 7966579 7966887 AGAACCAACTCATTTCCTGG 58 Novel Rattus norvegicus 81 AABR07068638.1 ENSRNOG00000056801 ENSRNOT00000081896 1 1 1 71 9 113788532 113800862 CAAGTGCCTCATTCAGGAG 58 113788479 113788497 ATGCACTCCTTACAGCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07042652.1 ENSRNOG00000061211 ENSRNOT00000081065 3 1 1 93 19 1445509 1445527 TTGAGCCCTCCTTCTTCAC 59 1436615 1445458 CTTGGATCTCTTCTAGAAATGTTCC 59 Novel Rattus norvegicus 81 AABR07056517.1 ENSRNOG00000057959 ENSRNOT00000087144 2 1 1 61 7 28372131 28372312 TGAAGGTTGACGACCTCTC 59 28372337 28372355 GCTCACAAGATCTGGAGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056605.1 ENSRNOG00000061490 ENSRNOT00000077675 1 1 1 123 7 31988092 31988110 TCAAGCTCTGTTGTGGGAG 60 31988196 32049205 TTGTCAAACCTTTCAACGGG 59 Novel Rattus norvegicus 81 AABR07042733.1 ENSRNOG00000053984 ENSRNOT00000089379 2 1 1 88 19 6013280 6013299 TAATGTGGGTAGCACATGTG 58 6004071 6004089 AGATCCAGTGGGTAAGGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07042780.1 ENSRNOG00000056140 ENSRNOT00000079386 3 1 1 93 19 8253057 8254507 AAGTTCTTTCGTTCTTGGCT 58 8254563 8254581 AACAGCATGTGAGACTGGA 59 Novel Rattus norvegicus 81 AABR07042802.1 ENSRNOG00000052398 ENSRNOT00000086667 3 1 1 62 19 9567058 9567076 GGAAGGAAATCAGCCAACG 59 9566623 9566641 AAGAACATGGCAGAGAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AC106681.1 ENSRNOG00000055220 ENSRNOT00000089176 1 1 1 69 19 10266730 10266748 CTACTACCTCTGCCTCCAC 59 10261439 10261457 TTGTAGAACCGGGTCTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AC106681.1 ENSRNOG00000055220 ENSRNOT00000089176 3 1 1 71 19 10266730 10266748 CTACTACCTCTGCCTCCAC 59 10261437 10261455 CCTTGTAGAACCGGGTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056680.1 ENSRNOG00000054516 ENSRNOT00000078509 1 1 1 130 7 35634685 35739097 GAAGTCAGAGGACTCTGCC 60 35634573 35634593 CCACCCTTTGAATTCTCTGTC 59 Novel Rattus norvegicus 81 AABR07027190.1 ENSRNOG00000053225 ENSRNOT00000085742 2 1 1 60 17 18866611 18866910 AGATTCTGCCCTGTCAGAG 59 18866932 18866952 GACTGAATGAGACTTTGGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069067.1 ENSRNOG00000060166 ENSRNOT00000077688 3 1 1 66 8 6963067 6987214 ATCTTTGCCCAGTTCAAGG 58 6963019 6963037 TTTGTAGGCAGTCTGACAC 57 Novel DesignRelaxed Rattus norvegicus 81 AABR07042825.1 ENSRNOG00000061468 ENSRNOT00000078065 2 1 1 123 19 11064657 11068176 TCTCAAGATAAAGGGCAGGG 59 11068262 11068280 TCTGGATCTGGACATCCCT 59 Novel Rattus norvegicus 81 AABR07027192.1 ENSRNOG00000057456 ENSRNOT00000083545,ENSRNOT00000080819 1 2 2 81 17 19056494 19056513 AGAAGACAAGGCTACTGGAG 59 19056554 19056912 GGAGTTCTCCTTTCTTTCATGG 59 Novel Rattus norvegicus 81 AABR07069211.1 ENSRNOG00000054478 ENSRNOT00000083731 1 1 1 69 8 12459038 12459056 ATGCCCAGACTGTTCAGAC 60 12457449 12457467 ACTTCTTGGAAGCTCAGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043028.1 ENSRNOG00000059724 ENSRNOT00000082309 1 1 1 85 19 17755224 17756104 GATATGGGTTTGTGCTGGG 59 17756153 17756171 AGAACAGAAGACAGGGTCC 59 Novel Rattus norvegicus 81 AABR07006911.1 ENSRNOG00000053954 ENSRNOT00000080845 2 1 1 129 1 270729800 270729818 CAGAAGTACCTGGACAACG 58 270712206 270712224 TAGATTCTGCCAGGTTGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07043031.2 ENSRNOG00000053855 ENSRNOT00000087349 1 1 1 80 19 18035548 18035566 CTGTTGACTTCAGCCTCAG 58 18035607 18072188 ATTAAGGAATACCTTGGCTGTG 59 Novel Rattus norvegicus 81 AABR07057219.1 ENSRNOG00000052947 ENSRNOT00000091352 3 1 1 66 7 61163831 61163849 GCTTAAGATCTCCATGGGC 58 61154323 61154342 GCATACTGTACAAGCTGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AC106606.1 ENSRNOG00000058736 ENSRNOT00000084033 3 1 1 92 1 273968429 273969815 AAAGACTGTTAGCGGTCTG 58 273968355 273968374 AAAGAGGGCTTATGAACAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07057415.2 ENSRNOG00000056418 ENSRNOT00000087453 3 1 1 93 7 70151933 70152621 CTCCTTCACAGAGCCAGTC 60 70151858 70151879 GTTAAATCCAAATGGCAGTTGG 59 Novel Rattus norvegicus 81 AABR07043525.1 ENSRNOG00000055482 ENSRNOT00000088267 2 1 1 82 19 29169404 29169423 GTTTCTCGATCTTGGAGAGG 58 29137185 29169359 TGATGTTGAATGGGCACTG 59 Novel Rattus norvegicus 81 AABR07027571.1 ENSRNOG00000052547 ENSRNOT00000083376 2 1 1 81 17 37358970 37360542 GAAGTAGAGGGAGAAGGTGTC 59 37360580 37360603 GCATTTCAGTAGGAAGTACTTCTG 60 Novel Rattus norvegicus 81 AABR07043615.1 ENSRNOG00000061386 ENSRNOT00000088621 1 1 1 80 19 32109653 32109672 CTGATGATGCTTCAGTGCTG 59 32107152 32109610 TTCCCTCTTAAAGCTGGGC 60 Novel Rattus norvegicus 81 AABR07057421.3 ENSRNOG00000059728 ENSRNOT00000079739 3 1 1 81 7 70264843 70264861 TTGTTCCTGGAGAGGAAGG 59 70257724 70264804 CTTGATATGTCATGGATATCGAGAG 59 Novel Rattus norvegicus 81 AABR07043642.1 ENSRNOG00000051454 ENSRNOT00000082783 3 1 1 60 19 33801213 33801235 GAGGACCCTTCTATGAATAGGAG 59 33800644 33801193 CTTCTTTGTTGCTCCTTGC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07057628.1 ENSRNOG00000054567 ENSRNOT00000079370 1 1 1 84 7 81701446 81723512 CTATCCAGATTGTCTGAGAATTCC 59 81701385 81701403 CAGAGTCTCTGTGCCAGAC 60 Novel Rattus norvegicus 81 AABR07057628.1 ENSRNOG00000054567 ENSRNOT00000079370 2 1 1 88 7 81701446 81723512 CTATCCAGATTGTCTGAGAATTCC 59 81701381 81701399 AAACCAGAGTCTCTGTGCC 60 Novel Rattus norvegicus 81 AABR07007391.1 ENSRNOG00000058141 ENSRNOT00000080120 1 1 1 80 2 12128489 12130270 GAATGGGAACCAGATTGGA 57 12128427 12128445 CACATTAGTCAGCGTACCT 57 Novel Rattus norvegicus 81 AABR07070078.1 ENSRNOG00000060536 ENSRNOT00000081870 2 1 1 85 8 48088891 48093652 GGCATGACATTAGTGGAGAG 58 48088825 48088843 ATTGCGTTCATCTGGTTGG 59 Novel Rattus norvegicus 81 AABR07057997.1 ENSRNOG00000054801 ENSRNOT00000082351 3 1 3 80 7 97358541 97421371 ATCTTCCTTCTGAAGTTCTTCC 58 97358482 97358501 CTCTTCTGCATGATCTTGGA 57 Novel Rattus norvegicus 81 AABR07057997.1 ENSRNOG00000054801 ENSRNOT00000090860 2 1 3 84 7 97462386 97462407 GAACATGGACTTACTGTTTGGA 59 97358538 97462342 CTAGGAAGAACCTCTGACCT 58 Novel Rattus norvegicus 81 AABR07058011.1 ENSRNOG00000060418 ENSRNOT00000089087 3 1 1 148 7 98125595 98132018 TCTCACCTGCAGGAATCAC 59 98125465 98125483 TTGTGAAGAGCAGAGTGGA 59 Novel Rattus norvegicus 81 AABR07007663.1 ENSRNOG00000052958 ENSRNOT00000089639 2 1 1 77 2 22864608 22867898 TTGTTTGCCAGACAAAGGG 59 22864549 22864567 CAATGTCATGGGAGAGGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058017.2 ENSRNOG00000053624 ENSRNOT00000079983 2 1 1 81 7 98718865 98722188 ACTTATTAGTTGGAGGCCGG 60 98718803 98718821 TAGACACGAAGTCCATGGC 60 Novel Rattus norvegicus 81 AABR07007691.1 ENSRNOG00000058293 ENSRNOT00000089699 1 1 1 80 2 24345302 24353314 TCATGACACAAGAAAGGCTC 58 24345241 24345259 CTCTCGAGTTTCTCACCAG 57 Novel Rattus norvegicus 81 AABR07058174.1 ENSRNOG00000054723 ENSRNOT00000084323 3 1 1 60 7 103622203 103622908 TAACGGATTCATCCGGAGC 60 103622931 103622950 TCCTGCCTTTGGAATCTCTG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07041514.1 ENSRNOG00000051679 ENSRNOT00000077586 1 1 1 91 X 132099816 132099834 GACATGGATCCGACTTTGC 59 132099655 132099764 CTTGAAAGCCAAATACTGTGTC 58 Novel Rattus norvegicus 81 AABR07029489.1 ENSRNOG00000051759 ENSRNOT00000085947 3 1 1 64 10 30546878 30555478 TAATCTGCAACTGCCAGCT 60 30546832 30546850 TCCCTTTGCAATGGTACAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07007717.1 ENSRNOG00000056427 ENSRNOT00000084325 2 1 1 83 2 25564979 25564997 GAAACCTGATGCAGACCAC 59 25565475 25565493 GACATCAGTCCTCTGAGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07041778.3 ENSRNOG00000058144 ENSRNOT00000081630 3 1 1 80 X 139484252 139486457 CATTTCAGAGTACCTGTTGCT 58 139486496 139486517 CTTGAATACTGACCATCAAGCT 59 Novel Rattus norvegicus 81 AABR07007793.1 ENSRNOG00000061197 ENSRNOT00000083741 3 1 1 83 2 28658167 28658186 AGAACAGTCACTCTCCAGAG 59 28657581 28658124 CTCTTCCTGCTATAACCTTCGA 60 Novel Rattus norvegicus 81 AABR07070265.1 ENSRNOG00000056498 ENSRNOT00000084245 1 1 1 81 8 62124508 62124526 TTTGAGCCAGGAAGAACAG 58 62125963 62125981 TAGCTCCACAGTGAAGGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07029634.4 ENSRNOG00000057177 ENSRNOT00000089816 1 1 1 93 10 41816367 41816390 CCAAATATCAGGAAAGAGATGGAG 59 41795055 41816315 TCTTGGCATCCTGCTACAG 60 Novel Rattus norvegicus 81 AABR07007802.2 ENSRNOG00000056276 ENSRNOT00000077915 1 1 1 80 2 28877943 28877963 TGTATGATGAGTGGATTGCTG 58 28873335 28877904 ATGGATAACATATCCTCTGCAC 58 Novel Rattus norvegicus 81 AABR07007802.2 ENSRNOG00000056276 ENSRNOT00000077915 2 1 1 80 2 28877945 28877965 ACTGTATGATGAGTGGATTGC 58 28873337 28877906 GGATAACATATCCTCTGCACTG 59 Novel Rattus norvegicus 81 AC095267.1 ENSRNOG00000051809 ENSRNOT00000077229 2 1 1 90 X 156225837 156225856 CTTCATGAGAGTGTGCACAC 59 156221240 156225784 CCGACCTGACCTTTCTCAG 60 Novel Rattus norvegicus 81 AABR07058608.1 ENSRNOG00000060713 ENSRNOT00000081449 1 1 1 78 7 127566845 127566863 ATCCACTGAGAATCGTTGC 58 127572169 127572187 GATGCAGTAAGGTGGTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07007853.1 ENSRNOG00000056525 ENSRNOT00000086168 3 1 1 139 2 31386333 31388254 ATGTAAACACATTGAGGCCT 58 31388355 31388374 CTTCTAGCACTGTCTTGACC 58 Novel Rattus norvegicus 81 AABR07058639.1 ENSRNOG00000053745 ENSRNOT00000091728 2 1 1 81 7 129340957 129340977 CAGTATACAGACTCTCAGCCC 60 129339961 129340914 TTCAACAAGCCAAGCTGTG 59 Novel Rattus norvegicus 81 AABR07007874.1 ENSRNOG00000054794 ENSRNOT00000091466 3 1 1 105 2 32297559 32297699 GATGCTTACTGCAGAACTGC 60 32297473 32297493 GGGAGTTCTGTCTTCAAACTG 59 Novel Rattus norvegicus 81 AABR07059153.1 ENSRNOG00000059246 ENSRNOT00000081010 1 1 1 72 4 5424328 5424346 TTCCTAGACTCCCATGTGC 59 5417550 5417568 ATCCTTCATGTTGAGCCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07059153.1 ENSRNOG00000059246 ENSRNOT00000081010 3 1 1 73 4 5424328 5424346 TTCCTAGACTCCCATGTGC 59 5417549 5417567 GATCCTTCATGTTGAGCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07070635.1 ENSRNOG00000053862 ENSRNOT00000088767 2 1 1 83 8 78320464 78320482 AGAAGAGGACAGCAGATGC 60 78318841 78320417 CTTCAGGATCCAAACCACG 59 Novel Rattus norvegicus 81 AABR07059372.1 ENSRNOG00000060864 ENSRNOT00000082294 1 1 2 80 4 16827535 16827553 TTTGAGCCTTCACTGTCTG 58 16827597 16828001 GATATGTGGTACAGCTGCC 58 Novel Rattus norvegicus 81 AABR07028281.1 ENSRNOG00000054750 ENSRNOT00000090527 1 1 1 81 17 63034065 63034083 GTTTAGCTCCCAGTCACGA 59 63033612 63034022 AAAGTCACGTTTCCAACTCTC 59 Novel Rattus norvegicus 81 AC096430.2 ENSRNOG00000059785 ENSRNOT00000089706 1 1 2 80 8 82416655 82417944 AACTTACCTTTAGACCTCACTG 58 82417985 82418003 TCTTTGAACTTCTGGTCCC 57 Novel Rattus norvegicus 81 AABR07028469.2 ENSRNOG00000051853 ENSRNOT00000084039 2 1 1 84 17 71451028 71451047 AATCAGCTTCTCAAGGACAG 58 71451094 71522294 CCTTTAGTGCCAACCTTCC 59 Novel Rattus norvegicus 81 AABR07070801.1 ENSRNOG00000061011 ENSRNOT00000085513 1 1 1 60 8 84886688 84893246 AAAGAGCAGCAGACAAGGA 59 84886646 84886666 TCTTCCTCTTCCTCTTCTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028499.1 ENSRNOG00000051375 ENSRNOT00000077379 1 1 1 62 17 72120213 72121732 AATACGCAAACACATGCCA 59 72121758 72121776 CTAATTAAGGCACGCCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07070816.2 ENSRNOG00000054728 ENSRNOT00000090962 3 1 1 85 8 85577138 85577377 GCATTGTTTGGTTGGAGCA 60 85577421 85577444 CCATCTAGGACAATTTCGATTCTG 60 Novel Rattus norvegicus 81 AABR07028513.1 ENSRNOG00000052052 ENSRNOT00000085056 1 1 1 80 17 73142336 73142354 ATCATGGTACTCCACAGCC 59 73142398 73143338 CAACCGTGGCTTCTTTCTC 59 Novel Rattus norvegicus 81 LOC103694645 ENSRNOG00000055663 ENSRNOT00000091347 3 1 1 88 4 33181879 33181898 CATCCAGTAAATGCTGCCTG 59 33181948 33197842 GACTTCGTTCTTTGTGGGTG 60 Novel Rattus norvegicus 81 AABR07059875.4 ENSRNOG00000057708 ENSRNOT00000080394 2 1 1 61 4 39637142 39637160 ATAACGTTTGCACCTGTCG 59 39637005 39637117 CTCACAGATGCTTGTCTGG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07028765.2 ENSRNOG00000059052 ENSRNOT00000087204 1 1 1 60 17 85196131 85196149 TAAGGACACCAGCTACTCC 58 85194657 85194675 ATGCTTCAGCCATAGGGAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07071198.1 ENSRNOG00000053034 ENSRNOT00000091570 1 1 1 80 8 104362467 104362486 ACCTTGGAAACAATGTCCTG 58 104359915 104362425 GCAGTTTACCTGACTTCCTG 59 Novel Rattus norvegicus 81 AC110102.2 ENSRNOG00000058227 ENSRNOT00000089694 3 1 1 81 4 44660402 44663694 GGAGAAAGTCAAGGGTTCAG 58 44660340 44660360 CAGGGACACTAGAATTTCTGG 58 Novel Rattus norvegicus 81 AABR07028797.1 ENSRNOG00000061071 ENSRNOT00000080704 1 1 1 80 17 86744823 86744843 GAGTTGCAAAGAATGCATCTG 59 86741674 86744781 CCCAGGAGATAGCTTCTCG 59 Novel Rattus norvegicus 81 AABR07071332.1 ENSRNOG00000058189 ENSRNOT00000090179 1 1 1 96 8 109773217 109773727 CCTCAGGTCTCAGGTTCAG 59 109773139 109773157 GATGCTGTCGGTGATTCTG 59 Novel Rattus norvegicus 81 LOC102550537 ENSRNOG00000061575 ENSRNOT00000086320 1 1 1 80 8 112398668 112411483 TCATATCTCCACAGATCCTGC 59 112411525 112411543 CATGTTGCCAAGGACACTC 59 Novel Rattus norvegicus 81 LOC102550537 ENSRNOG00000061575 ENSRNOT00000086320 2 1 1 80 8 112398670 112411484 ATATCTCCACAGATCCTGCT 58 112411527 112411545 TTCATGTTGCCAAGGACAC 59 Novel Rattus norvegicus 81 AABR07060151.1 ENSRNOG00000053863 ENSRNOT00000083274 1 1 1 60 4 59196421 59202839 CAAACTTTACTACTGCTGAGGG 59 59196382 59196401 TAAACTCTAGCACGTTGCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07008424.1 ENSRNOG00000056794 ENSRNOT00000085759 1 1 1 80 2 57943693 57944458 CTTTCTACAATGTCCGAACCT 58 57943633 57943652 CATCTGACAGCAGTAGATGG 58 Novel Rattus norvegicus 81 AABR07071402.1 ENSRNOG00000056542 ENSRNOT00000084690 3 1 1 101 8 114131945 114131963 CACATGAAGTGGCTGATCG 59 114132028 114132761 CAGAGTAGGCCACAACCTC 60 Novel Rattus norvegicus 81 AABR07008462.1 ENSRNOG00000060305 ENSRNOT00000081263 3 1 3 93 2 59872789 59877547 GCCTAAAGGCAAAGACTTTCC 60 59877599 59877620 ATTTCTTTCCGGTAGGTAGGAG 59 Novel Rattus norvegicus 81 AABR07060341.3 ENSRNOG00000061613 ENSRNOT00000088650,ENSRNOT00000078712 1 2 2 80 4 68429793 68432750 TATGATTATTACACGGGTGCAG 59 68432788 68432809 AAGATTAATGTGCTCAAGAGGG 59 Novel Rattus norvegicus 81 AC123500.2 ENSRNOG00000053935 ENSRNOT00000087266 2 1 1 96 19 41919581 41928154 TCAGTCTATACCCTTCGGG 58 41919503 41919521 GATGGTTGTCCTGTGAGTG 58 Novel Rattus norvegicus 81 AABR07008594.1 ENSRNOG00000058273 ENSRNOT00000080790 3 1 1 84 2 65870809 65870829 CCAACACTCAGTGAAATCAGC 60 65851558 65851581 CCTGATAAGTTATCTGCTTCATGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07071567.1 ENSRNOG00000053523 ENSRNOT00000083235 3 1 1 66 8 122328063 122328084 GAACACAAGTCTGAAGTATGTC 57 122326411 122328038 TGACACAACCTAGAATCAGTG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07043844.1 ENSRNOG00000059155 ENSRNOT00000082617 2 1 1 87 19 43534888 43534906 CTGGAGTCTGAGGACTCAG 59 43534956 43536181 TGATCCTACTGGAACACTGG 59 Novel Rattus norvegicus 81 AC096072.1 ENSRNOG00000052736 ENSRNOT00000080286 3 1 1 63 4 81789787 81789806 CTAATGGTTCGAACGTTCCC 59 81791888 81791906 ATTCTTCTGTTCGCTGCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008671.1 ENSRNOG00000061619 ENSRNOT00000078485 3 1 1 85 2 69809757 69809777 CCCAAATCTTCACTGAAACAG 58 69763244 69803544 TCAGTACATTTGCACACCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07043877.3 ENSRNOG00000056500 ENSRNOT00000088864 3 1 1 89 19 45441918 45460471 CATCTTGAGAAGATACCAATCTTCC 60 45460517 45460536 ATCTTGGATGTTGTCCTGGA 59 Novel Rattus norvegicus 81 AABR07060589.1 ENSRNOG00000061189 ENSRNOT00000089053 2 1 1 139 4 82481808 82481827 TATACATCGCTGTTGTGCCT 60 82484999 82485658 TTTCCTGCACACCTTTCCT 60 Novel Rattus norvegicus 81 AABR07008788.1 ENSRNOG00000057307 ENSRNOT00000083980 2 1 1 152 2 73912288 73956522 AATGTTGTTCAGGACTCAGC 59 73956635 73956655 GCCAACAACTTGACATTTGAG 59 Novel Rattus norvegicus 81 AABR07008844.1 ENSRNOG00000061700 ENSRNOT00000079902 3 1 1 70 2 76366118 76366136 AAAGTCCCTACAACCTGGG 59 76364932 76366084 AGATCCTTGGCACTTTCTG 57 Novel DesignRelaxed Rattus norvegicus 81 AABR07058685.1 ENSRNOG00000055474 ENSRNOT00000084361 2 1 2 153 7 131431136 131435123 GAATTAATGAGAAGTCTGCTGAGAC 60 131382027 131382047 AGGAATTTAGAGGCCACTCTG 60 Novel Rattus norvegicus 81 AABR07058724.1 ENSRNOG00000053433 ENSRNOT00000086171 3 1 1 66 7 135124911 135124929 ATAATTGCTTCCAGGTGGC 58 135124959 135146084 TTTCATTGTCAGGGTGGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07009351.1 ENSRNOG00000058574 ENSRNOT00000079444 2 1 1 94 2 93847274 93847293 ATTTGATGTGAAGAACCGGC 59 93845651 93847217 CACAGCTTGCTGAGTTGTG 60 Novel Rattus norvegicus 81 AABR07009984.1 ENSRNOG00000056289 ENSRNOT00000082676 2 1 1 70 2 119558797 119560949 GAATAATGTCCACTCCTTGGT 58 119560978 119560999 TCCTGCAGAAATATCCTTTGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010033.1 ENSRNOG00000053304 ENSRNOT00000077121 3 1 1 60 2 121570264 121570282 AGGTGATAGAATGGCAGCT 59 121570222 121570240 AGCGACATGAAGTACAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010342.1 ENSRNOG00000053123 ENSRNOT00000077766 3 1 1 98 2 132846552 132847598 TCTGAAATGACAGGTTTGGA 57 132847658 132847677 GATTTGGATTCAGTTGGCTC 57 Novel Rattus norvegicus 81 AABR07010620.1 ENSRNOG00000055580 ENSRNOT00000077309 2 1 1 105 2 144175709 144178113 GATTAACACGACAGGTGCT 58 144175622 144175640 TACGGTTTGTACAGCTGGA 59 Novel Rattus norvegicus 81 AABR07010620.1 ENSRNOG00000055580 ENSRNOT00000077309 3 1 1 105 2 144175708 144178113 GATTAACACGACAGGTGCTG 59 144175622 144175640 TACGGTTTGTACAGCTGGA 59 Novel Rattus norvegicus 81 AABR07010986.1 ENSRNOG00000051495 ENSRNOT00000089440 2 1 2 101 2 156399653 156405557 CCCATCAAATCCAGCAGAG 58 156399215 156399589 AACCCATCAAGTTCCATAGG 57 Novel Rattus norvegicus 81 AABR07011145.1 ENSRNOG00000059427 ENSRNOT00000078981 3 1 1 80 2 158978148 158978167 TATTGTCAACCACTTCCCAC 58 158963682 158978107 ACCTTTACTTTCTTGTCTCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07011512.1 ENSRNOG00000061049 ENSRNOT00000089194 2 1 1 120 2 162986972 162988715 TTTCTTTCGAGATTCCTCCAG 58 162988797 162988815 TGGTAAATGACTTTGCCGA 57 Novel Rattus norvegicus 81 AABR07011841.1 ENSRNOG00000056204 ENSRNOT00000084889 1 1 1 80 2 171693073 171693093 TGCTGGATATGAGATGAACAC 58 171693135 171693560 GCCTTTGCATAAACCTGGA 58 Novel Rattus norvegicus 81 AABR07011991.1 ENSRNOG00000054279 ENSRNOT00000078292 1 1 1 80 2 180545502 180546558 ACTGCATTGTATGAAGAGACTG 59 180545443 180545462 CAGTTTCAACGGTCATTCCC 60 Novel Rattus norvegicus 81 AABR07011991.1 ENSRNOG00000054279 ENSRNOT00000078292 2 1 1 81 2 180545502 180546558 ACTGCATTGTATGAAGAGACTG 59 180545442 180545461 CCAGTTTCAACGGTCATTCC 60 Novel Rattus norvegicus 81 AABR07011996.1 ENSRNOG00000061272 ENSRNOT00000088226 1 1 1 108 2 180878456 180880392 TGTTTGTGGCATTGCAGAC 60 180880462 180880482 AGTTGTTGAAACCTGAAGCAC 60 Novel Rattus norvegicus 81 AABR07012081.2 ENSRNOG00000058727 ENSRNOT00000080610 1 1 1 90 2 184916590 184916843 TTGTGTCATGTGGACCTCC 60 184916518 184916536 TATCGAAGCACAGTGTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012711.1 ENSRNOG00000054483 ENSRNOT00000084047 3 1 1 82 2 203049464 203049488 AGAGGAGTTTCTACTGAAGTATCAC 60 203049527 203049971 TTAGAGGCTCAGCTTTGTCC 60 Novel Rattus norvegicus 81 AABR07072374.1 ENSRNOG00000051972 ENSRNOT00000083647 2 1 1 61 14 11490454 11490475 GTTAGAATTAAGCAGTGGGTCC 59 11488306 11490432 TCTGACTCAGCACAACCTG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07014512.2 ENSRNOG00000058092 ENSRNOT00000091701 2 1 1 60 14 18855562 18855583 GCTCTTTAAGATGGCTCTTTGG 60 18855604 18855814 ATCTGCACTTTGCTCTGGT 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07014649.1 ENSRNOG00000053415 ENSRNOT00000080022 1 1 1 97 14 24842985 24877878 GTACTACATGTGCCCAGGT 59 24877936 24877957 GTTTGAATGCTGCATATCTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013410.3 ENSRNOG00000059757 ENSRNOT00000085253 3 1 1 99 2 236047248 236051842 GAAAGACCCAAAGAGACGG 58 236047167 236047185 AATAGAAAGCAGATGCGGT 57 Novel Rattus norvegicus 81 AABR07013698.1 ENSRNOG00000052331 ENSRNOT00000087623 2 1 1 87 2 251179686 251180985 TCTACGGCTTTACCCACTC 59 251179617 251179636 TAAGGAGCCAAGGAAGTTGG 60 Novel Rattus norvegicus 81 AC114070.1 ENSRNOG00000055627 ENSRNOT00000077992 3 1 1 80 15 35953352 35953373 AGGGTTGATTTCTGCAAATCTG 60 35955758 35955779 ATTAGAGCATGAGAGCTTAAGG 58 Novel DesignNoJunction Rattus norvegicus 81 Mroh4 ENSRNOG00000005382 ENSRNOT00000076443 2 1 4 81 7 115868315 115873154 GAAACACTCCAGATAACTTGGA 58 115868255 115868273 TTAACCACCATGTCCTCCC 59 Novel Rattus norvegicus 81 AABR07072200.1 ENSRNOG00000059704 ENSRNOT00000079379 2 1 1 60 10 101989816 101989834 CACTGAAAGCCAAGAGTGG 59 101989859 101989878 CCATTCCAGAGCCTTAGAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07038624.1 ENSRNOG00000055606 ENSRNOT00000091191 3 1 1 67 X 57058436 57058454 GACAAGACTCGTTGGTCCA 60 57058219 57058239 TTCGTGTCCTTCTTTGTAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 Cfap61 ENSRNOG00000011028 ENSRNOT00000034522 2 1 4 80 3 140156542 140160340 GAAATTCCATGCACAGACTG 58 140160382 140160401 AGACTCAGATATGTTGGCAC 57 Novel Rattus norvegicus 81 AABR07038464.1 ENSRNOG00000061492 ENSRNOT00000085116 3 1 1 84 X 50184661 50184680 AAAGAGGAGAGGTACTTGGT 58 50184518 50184615 TTTGCCTTGTATGTACGTGG 59 Novel Rattus norvegicus 81 SNORA11 ENSRNOG00000052201 ENSRNOT00000087193 1 1 1 61 3 103986623 103986641 CTGAGGAATGGCTCCTCTG 60 103986666 103986684 CCTCCTCACATCATGACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063082.1 ENSRNOG00000031342 ENSRNOT00000050986 1 1 1 60 6 17759990 17760008 ACAGTCAGAATGGGAAGGA 58 17760032 17760050 TGGTGAAGGGACATCAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051874 ENSRNOT00000077463 3 1 1 70 17 28020951 28020969 TTATCCATTGCACTCCGGA 59 28020899 28020918 ATTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000051714 ENSRNOT00000087464 2 1 1 60 4 165622037 165622055 CTCCTGGGTAGTGTATGCT 58 165621995 165622015 TGTCTCCTAGGTCCCTTAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059787 ENSRNOT00000077907 2 1 1 60 4 145403281 145403299 TACAAGCTTGCTCCATCCA 59 145403239 145403258 ACCATTCCTGGAGATACTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Chd9 ENSRNOG00000049302 ENSRNOT00000076814,ENSRNOT00000078786 2 2 4 80 19 17428687 17428706 ACCCTTAAGGTTTCCATCTG 57 17428534 17428645 TGAAGTTTCTGAACCTGCTC 58 Novel Rattus norvegicus 81 Rn60_2_1411.1 ENSRNOG00000051361 ENSRNOT00000076638,ENSRNOT00000076033 2 2 3 73 2 121357830 121357848 AAGACACAGATGCCCAGAC 60 121386149 121386167 GCTTCTGTCCAGACTCTCC 60 Novel DesignNoJunction Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000076831,ENSRNOT00000057756 1 2 5 80 6 114783596 114818954 AATGCATTACAGATGAGTACCC 58 114783537 114783555 GAAATCCTCTAGCAGGCTC 57 Novel Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000076831,ENSRNOT00000057756 3 2 5 80 6 114818957 114835031 GAAACTCTCCAGGACCGAG 60 114783558 114783576 TTTCTCAGGCACAGACTCC 59 Novel Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000076546 3 1 5 81 6 115155621 115155642 GAAGAAATGATAGGAGGCAAGC 60 115144834 115155579 TCTGGTGGAACCCAAAGTG 60 Novel Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000057756 2 1 5 80 6 115018649 115018674 CTAAGAATACAGAGTCTGAAGGAG 58 115001662 115001680 CATCCTCCTTAAGTGCTCC 57 Novel Rattus norvegicus 81 AABR07060953.1 ENSRNOG00000053327 ENSRNOT00000087901 3 1 1 60 4 101645785 101645805 AGTTCCTGTTTCTGCTAATGC 59 101646208 101646226 TGGGTCATCACAACATCTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07049134.2 ENSRNOG00000052092 ENSRNOT00000089832 1 1 1 60 5 107288851 107288869 GAAGCTGAAAGAAGCCACC 59 107288805 107288823 AAAGAGGTCGAGGATCAGC 59 Novel DesignNoJunction Rattus norvegicus 81 Prdm16 ENSRNOG00000045913 ENSRNOT00000077015,ENSRNOT00000071280 3 2 4 88 5 171667127 171668413 CTAAGAACCAGGCATACGC 58 171667057 171667075 CAACCAAGCATCCAGTGAG 59 Novel Rattus norvegicus 81 AABR07059778.1 ENSRNOG00000061072 ENSRNOT00000086248 1 1 1 88 4 34962368 34962386 TAAACAGGTGAAAGCCAGG 58 34962438 34962460 GCATTCGGTCTTCTAGAGG 57 Novel Rattus norvegicus 81 U6 ENSRNOG00000058612 ENSRNOT00000087422 2 1 1 61 1 16969943 16969961 ATGCTAGCTTTGGCAACAC 59 16969986 16970004 GGGCCATGCTAATCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025272.1 ENSRNOG00000056947 ENSRNOT00000084847 1 1 2 80 16 31274706 31274727 CTACATTTCATAGAGAAGGCCC 58 31273649 31274408 TATGGTCTGGGTGATGAGTG 59 Novel Rattus norvegicus 81 Col4a4 ENSRNOG00000014851 ENSRNOT00000075968,ENSRNOT00000041176,ENSRNOT00000077503 1 3 4 86 9 88336277 88341889 CCATACAATATGAATATGGGAGCAG 60 88336215 88336233 TTTCAGGGAAACACTGGCA 60 Novel Rattus norvegicus 81 AABR07062599.1 ENSRNOG00000036912 ENSRNOT00000055436 3 1 1 61 4 183941458 183941476 CCAGAAGGATCCTGGAGAG 59 183941503 183941521 ATACTGCTTCAGACTCGCA 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_2_2279.3 ENSRNOG00000048272 ENSRNOT00000075256 2 1 2 120 2 208383457 208383476 ACTGACAACAGAGAAGACCG 60 208385092 208392606 GAATGGACATTTCACCGGG 59 Novel Rattus norvegicus 81 Fam9b ENSRNOG00000037455 ENSRNOT00000076180 3 1 3 120 X 73496700 73496719 CAGTATTGAAGCAGAGCGTC 59 73501469 73501487 AATTCTTCAGGGTCCCTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07052848.1 ENSRNOG00000061249 ENSRNOT00000077487 1 1 1 63 3 79151577 79151595 TATTCAAGCTTGCCTGCAC 59 79151530 79151548 ATTAGACCACTGTTGGCCA 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000051845 ENSRNOT00000078076 3 1 1 60 19 10729498 10729516 GCTACTAGACCCTCCAGAC 58 10729540 10729558 CAAGGCTCTATGTCCAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561796 ENSRNOG00000007268 ENSRNOT00000068577 3 1 2 137 10 11879765 11880326 AAACACAGCTTCCAGTTCC 58 11880427 11880445 GTTCTCTTGCACAAGGGAC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000052258 ENSRNOT00000082069 2 1 1 60 13 31370610 31370632 GGAACGATACAGAGAAGATTAGC 59 31370652 31370670 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065714.1 ENSRNOG00000059121 ENSRNOT00000077113,ENSRNOT00000084547 3 2 2 84 6 139784132 139911804 TTTGAAAGGTGTCCAGTGTG 59 139784067 139784085 ACAGGAGAGTTTCAGGGAC 59 Novel Rattus norvegicus 81 RGD1562521 ENSRNOG00000003009 ENSRNOT00000076500,ENSRNOT00000086290,ENSRNOT00000037886 1 3 3 81 X 74016387 74047878 CTGTCTGAAGAAATTGAAACCG 58 74016327 74016345 GATTCTTTGGCCATGTGGA 58 Novel Rattus norvegicus 81 RGD1562521 ENSRNOG00000003009 ENSRNOT00000076500,ENSRNOT00000037886 3 2 3 81 X 74012058 74014924 GAAGACTGCTGGATACAGC 58 74011995 74012013 TCCTATGTATGAGGCCCAC 58 Novel Rattus norvegicus 81 AC096473.2 ENSRNOG00000053543 ENSRNOT00000084369 3 1 1 68 7 120138213 120138234 GGGAAGATACTCTATCTGTCCC 59 120138164 120138182 AAAGCTTCCTCTCCTGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 Cfb ENSRNOG00000000419 ENSRNOT00000075928,ENSRNOT00000065044 2 2 2 80 20 4543429 4543602 CCTGTAAAGACCATGAGACAG 58 4543369 4543387 TCATTCTGTTCCCGTTCAG 58 Novel Rattus norvegicus 81 Cfb ENSRNOG00000000419 ENSRNOT00000065044 1 1 2 113 20 4559407 4560662 CTGCAAACCTGTTCGATGTC 60 4559313 4559331 AAACCATGCTCACACTCGA 60 Novel Rattus norvegicus 81 AABR07072389.1 ENSRNOG00000057440 ENSRNOT00000083280,ENSRNOT00000087170 3 2 2 80 14 32869829 32869848 TTCTCAGGTTCATCCAAACG 58 32856121 32869788 GAGTATAAGAAGGCTCTGTCC 57 Novel Rattus norvegicus 81 AABR07061400.1 ENSRNOG00000053471 ENSRNOT00000083513 2 1 1 61 4 121701581 121701601 GTGCTCTTTACACAATCACTC 57 121703149 121703167 TCTCATGAAGTGCCTTGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000714.1 ENSRNOG00000051597 ENSRNOT00000081325 1 1 1 60 1 24073417 24073436 CTAGGCAGACTCAGAGACAG 59 24072674 24072692 GTCCTCCAGATGTCAACAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07049257.1 ENSRNOG00000052160 ENSRNOT00000083745 3 1 1 60 5 111966002 111966022 TTACGAAGTACTGAGGATGGT 58 111978190 111978208 CTCACAAGTTGTCTCAGCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07062157.1 ENSRNOG00000057273 ENSRNOT00000079638 1 1 1 60 4 162999617 162999637 TTCCTTCTCATTCGGAAATGG 58 162999656 162999677 GTACAGCTGTTCTTTCAGTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07045680.1 ENSRNOG00000056040 ENSRNOT00000085220 2 1 3 198 20 56198351 56198371 GGTTGGTCTGTTCTGATATGC 59 56198530 56198635 TAAGAGACGAGTGTTGGCAG 60 Novel Rattus norvegicus 81 AABR07045680.1 ENSRNOG00000056040 ENSRNOT00000082897 3 1 3 168 20 56198166 56198184 TTCCTGTTCTTGGACCTGG 59 56198530 56198635 TAAGAGACGAGTGTTGGCAG 60 Novel Rattus norvegicus 81 AABR07049681.1 ENSRNOG00000052717 ENSRNOT00000090776 3 1 2 121 5 132691745 132700512 GAATCCAGGCATAAATGTTGTG 58 132706070 132706088 TGGAACTTGGGTCATTCCT 59 Novel Rattus norvegicus 81 AABR07001493.1 ENSRNOG00000058258 ENSRNOT00000090336,ENSRNOT00000080468 1 2 3 80 1 47513321 47513705 GTCCACGTTCAGAAGAAGG 58 47513748 47513767 GCTGTCTGCTCCATTAACAG 59 Novel Rattus norvegicus 81 AABR07049903.1 ENSRNOG00000057914 ENSRNOT00000087953 1 1 1 60 5 143851549 143851569 ACATGATCTTGGAGACAAACC 58 143852407 143852428 GAGTCTTCTCTTCTTTACTGGT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07032155.1 ENSRNOG00000061729 ENSRNOT00000083343 3 1 1 60 18 50133428 50133448 CTTGTATCCAGAGTCACTCAG 58 50093993 50094013 GATCTGTCAAAGAAGTCAGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07001762.1 ENSRNOG00000061057 ENSRNOT00000087311 2 1 1 83 1 56541415 56541433 GATAGAAAGCAGATGCGCT 58 56539436 56539457 GAGGAGTAGGAATTTAAAGCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032563.2 ENSRNOG00000058559 ENSRNOT00000079123 2 1 1 60 18 71990613 71990631 ACCTGCAGGATCCATTCTC 59 72001723 72001741 GCAATTCAGGAGCTTTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07051511.1 ENSRNOG00000054597 ENSRNOT00000080055 2 1 1 109 3 14433554 14433572 GCCGATTCATTCGCAAGAG 60 14434670 14434688 ACCAGGTCTTAGCAGAGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07051567.1 ENSRNOG00000054810 ENSRNOT00000082446 2 1 1 63 3 17198653 17198674 CAATAGAAATCCTTGCATCCAC 58 17208078 17208099 ATTTCTCCTTTCTTCCTACCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07020404.1 ENSRNOG00000058698 ENSRNOT00000080690 3 1 1 70 13 24520513 24520531 AATTCACCACCATCTCCAG 57 24516755 24516775 GAGGATTCCATTCATCTTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065448.1 ENSRNOG00000060974 ENSRNOT00000091301 1 1 2 83 6 128999057 129000092 GCTGGAAGACTGTGTTCTC 58 128998992 128999011 TGGTAATGGATGACATGCTG 58 Novel Rattus norvegicus 81 AABR07004228.1 ENSRNOG00000059662 ENSRNOT00000077086 1 1 2 80 1 131385502 131385760 CAAATGATAGGAGGGAGATGGA 59 131385443 131385464 GACTGTAGAAAGACATCTTCCC 58 Novel Rattus norvegicus 81 AABR07035008.1 ENSRNOG00000053067 ENSRNOT00000085147 2 1 3 85 12 3223496 3223514 TGAGGTGTAGGCTTGACAG 59 3223562 3224153 GCTGAAGCCCTTTAAGACAG 59 Novel Rattus norvegicus 81 AABR07035065.1 ENSRNOG00000061479 ENSRNOT00000080405 3 1 2 117 12 3807978 3808636 TTACTCCTCATGCAGATGC 57 3808717 3808735 AGATACAGAGTCCCAGCTC 58 Novel Rattus norvegicus 81 AABR07022098.1 ENSRNOG00000056214 ENSRNOT00000086661 3 1 1 62 13 107491206 107491224 CACAGACGAGTGTATGCTG 58 107501025 107501043 TACACAAACCGTCACACCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035193.1 ENSRNOG00000051857 ENSRNOT00000089628 3 1 1 61 12 6602693 6602711 CCTCTATGGCGATGACCAG 60 6592705 6592726 GTAGTTCACCTACAGATGTCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035273.1 ENSRNOG00000055687 ENSRNOT00000083249 3 1 1 65 12 9332070 9332088 CTCACGAGACAGGATACCC 59 9332591 9332609 ATTGTCTTAATGCCGCTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07066188.1 ENSRNOG00000054742 ENSRNOT00000079245 3 1 1 72 9 4621515 4621534 CAGATCCTCAGTAAACCCAC 58 4622742 4622760 TCTGGGCCACAGTAAAGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07066871.2 ENSRNOG00000057011 ENSRNOT00000090558 2 1 1 64 9 20523742 20523760 AAAGTGACATTGACCGGAG 58 20525024 20525043 ACCTCACATGTGAAGGATCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07025152.1 ENSRNOG00000054002 ENSRNOT00000086692 2 1 1 61 16 29993385 29993405 TCTGGGATGCTTTCAATACTG 58 29983977 29983997 ACTTAACTCCTTTCTCCAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035796.1 ENSRNOG00000057927 ENSRNOT00000090331 2 1 1 70 12 22601938 22601956 GTTCTGCCAATCCATCAGG 59 22604851 22604869 CTCCTGGCTTCTTGAAACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054352.3 ENSRNOG00000053808 ENSRNOT00000086150 2 1 1 60 3 149259498 149259518 CAGTGAGTTTCTTCTAAAGCC 57 149258201 149258221 CTAGGTAACTCTTGAGTGTCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07036301.1 ENSRNOG00000059211 ENSRNOT00000084584 1 1 1 83 12 36812690 36812708 TTACTGGGCTGATGGATGG 59 36813653 36813672 GGTACAGGATAGAACGAGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07005794.1 ENSRNOG00000060009 ENSRNOT00000079434 2 1 2 80 1 200369744 200369765 CTATGACCTAACCAACTCAGTG 58 200369806 200369928 CGATCATCAACCTTCTGCC 59 Novel Rattus norvegicus 81 AABR07005794.1 ENSRNOG00000060009 ENSRNOT00000079434 3 1 2 80 1 200369745 200369765 TATGACCTAACCAACTCAGTG 57 200369807 200369929 TCGATCATCAACCTTCTGC 58 Novel Rattus norvegicus 81 AABR07042781.2 ENSRNOG00000056142 ENSRNOT00000088336 3 1 1 129 19 8404466 8404487 TTTGATAAGAAAGAGCTGAGGG 58 8368527 8368546 TGATTCTTGTGGAGATGCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027192.1 ENSRNOG00000057456 ENSRNOT00000080819 1 1 2 93 17 19056923 19056941 TTCATTGTCAACCGGAGCT 60 19056997 19057260 TCTTTGTGACTGAGTTTGGC 59 Novel Rattus norvegicus 81 AABR07027254.1 ENSRNOG00000055855 ENSRNOT00000089756,ENSRNOT00000089333 3 2 2 91 17 21293251 21294175 AAGAACAATACACCACTTGGG 59 21293180 21293200 GAGACCTTAGGTATTGGTGTG 58 Novel Rattus norvegicus 81 AABR07057235.1 ENSRNOG00000060586 ENSRNOT00000078923 3 1 1 81 7 62236167 62236185 TCTTCCTTCCTCATGGACG 59 62236993 62237011 TCTTCAGTCTTGAGCTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057385.1 ENSRNOG00000060670 ENSRNOT00000082115 1 1 1 75 7 69338568 69338586 GTTCAGAAAGTGCAGGTGG 59 69339893 69339913 CTTGCAAACAACTCTTCTGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028907.1 ENSRNOG00000057054 ENSRNOT00000081159,ENSRNOT00000088397 2 2 3 80 10 15260 15278 AAGCTGAAACCAGAAACCG 59 13173 15219 CAAACTTCTCCTTCACAGACTC 59 Novel Rattus norvegicus 81 AABR07028984.1 ENSRNOG00000060803 ENSRNOT00000090929 3 1 1 62 10 1581169 1581187 GGCTACATCCAGATGACAC 58 1582477 1582499 GATCCACAGAAAGAATCCTAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07041418.1 ENSRNOG00000058217 ENSRNOT00000082364 1 1 1 60 X 129482637 129482656 CATGAACGGAAGTCTGATGG 59 129481106 129481126 CCATATCACAACAAACAGGAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07042440.3 ENSRNOG00000057733 ENSRNOT00000088577 2 1 1 61 X 155797945 155797963 AGTACTTTGACCAAGCCAG 57 155796430 155796449 TTCTGTGGACTCTTCATCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058985.2 ENSRNOG00000059271 ENSRNOT00000086366 2 1 2 142 4 105108 105126 GCCACTAAAGCACAATGCA 60 105232 105337 TGTGGAAGCAGCTCATCTC 60 Novel Rattus norvegicus 81 AABR07007875.1 ENSRNOG00000060901 ENSRNOT00000089520 2 1 1 60 2 32310181 32310201 TTAGGTCTCACCATCTGTAGC 59 32310419 32310438 AGTTCTGTTCTTCTGCTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028499.1 ENSRNOG00000051375 ENSRNOT00000077379 1 1 1 69 17 72120206 72120225 TGCAGTAAATACGCAAACAC 57 72121758 72121776 CTAATTAAGGCACGCCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07070873.1 ENSRNOG00000058012 ENSRNOT00000088063 3 1 1 61 8 89236957 89236976 TCCACATTCACCAGGATCTC 59 89235851 89235872 GTTATTCTCATCTGACTGTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07060151.1 ENSRNOG00000053863 ENSRNOT00000083274 3 1 1 60 4 59202823 59202844 CAAGGCAAACTTTACTACTGCT 59 59196387 59196405 TCTAGCACGTTGCTCACTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07045483.1 ENSRNOG00000060038 ENSRNOT00000082374 3 1 1 65 20 48815845 48815863 ACAATGAAGACCACCACAG 58 48814469 48814490 CATGTCCTTGCTTGTTTATGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071552.1 ENSRNOG00000060361 ENSRNOT00000088551 3 1 1 60 8 121730405 121730426 ACGTACACATTCAAATCACCAC 60 121726287 121726305 CAAACTTCTGGATGGCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008671.1 ENSRNOG00000061619 ENSRNOT00000078485 2 1 1 63 2 69809757 69809778 ACCCAAATCTTCACTGAAACAG 59 69803549 69803567 TTTCTGTGCCTTCATCACG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010718.1 ENSRNOG00000058650 ENSRNOT00000090614 1 1 1 78 2 149090437 149090456 AGTTCTGCAGTTTGGATGTC 59 149096543 149096562 CCAAATGACAGTGTCCACAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07012081.2 ENSRNOG00000058727 ENSRNOT00000080610 2 1 1 72 2 184917327 184917345 TTCCTGTGGTCAGATGGTG 59 184916940 184916958 ACAGGAAGTAGCTGTCAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014649.1 ENSRNOG00000053415 ENSRNOT00000080022 2 1 1 101 14 24842981 24843000 AGTAGTACTACATGTGCCCA 58 24877936 24877957 GTTTGAATGCTGCATATCTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012728.2 ENSRNOG00000061513 ENSRNOT00000079009,ENSRNOT00000082428 2 2 2 93 2 204039578 204040869 AAGACACCTTCAGGCAGAG 59 204040926 204040944 GCTTCATCCAATGCAGAGG 59 Novel Rattus norvegicus 81 AABR07013764.2 ENSRNOG00000060722 ENSRNOT00000089348 2 1 1 76 2 255466054 255466072 AAAGGTCTACAGCTCTTGC 58 255464372 255464391 CCTCTTGAGACTTGACTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 Mt-atp6 ENSRNOG00000031979 ENSRNOT00000046108 3 1 1 60 MT 8398 8417 AACAGCAAACATTACAGCAG 57 8439 8458 TACTAGAGTAGCTCCTCCGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mt-nd6 ENSRNOG00000029042 ENSRNOT00000051268 2 1 1 60 MT 13842 13866 GTATTTGGGTATACAACTGCTATGG 60 13806 13826 AATTAGACCCTCAAGTCTCCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Impa1 ENSRNOG00000010482 ENSRNOT00000014274 1 1 1 80 2 93683732 93685265 CAGCAGGAAGACATTACCA 57 93685309 93685327 GAGAACAATCCGCAAAGTC 57 NA Rattus norvegicus 81 Elovl7 ENSRNOG00000010450 ENSRNOT00000014074 1 1 1 80 2 40373697 40377442 CTCTTTGCAGCTTGTCCAG 59 40373635 40373656 TACTGGTAATTGCAGTCTTCCA 60 NA Rattus norvegicus 81 AABR07012317.1 ENSRNOG00000049173 ENSRNOT00000072995 3 1 1 85 2 193063292 193063310 CCCTCCTAAGTGTCAAACC 58 193063225 193063243 TACAGCAGGAAGACACAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kprp ENSRNOG00000028865 ENSRNOT00000042142 2 1 1 60 2 193133147 193133166 GAGATCCCATTCATTGTCCC 58 193133106 193133125 TCTTGGCTGTAAGGAACTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab3c ENSRNOG00000011623 ENSRNOT00000015871,ENSRNOT00000086851 2 2 2 81 2 41592184 41684263 GCTGTACAAGATTGGTCAACTC 60 41592124 41592142 TGTCACATTTGTTTCCGGC 59 NA Rattus norvegicus 81 Fabp5 ENSRNOG00000049075 ENSRNOT00000075493 1 1 1 80 2 93982956 93985222 TACATGAAGGAACTAGGAGTAGG 59 93982898 93982916 GTCGAGGGTAATGATGCAG 58 NA Rattus norvegicus 81 Crct1 ENSRNOG00000009574 ENSRNOT00000012684 3 1 1 69 2 193330655 193330673 TTCCAAAGGGTCTTCCCAG 59 193330604 193330622 AGATGAGGAGGACGTAGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tssk4 ENSRNOG00000019789 ENSRNOT00000026819 3 1 1 100 15 34329104 34329122 CAAGCAGAAGGTCATGGTG 59 34329181 34329539 CTTTCATTACCTGTATCTCACGTG 60 NA Rattus norvegicus 81 Ifi44l ENSRNOG00000049994 ENSRNOT00000073547 1 1 1 80 2 256976555 256977766 GTAGTAGACTGCGGTGTAGG 59 256977806 256977827 TACAAGATTGTTGTCGAGAACC 59 NA Rattus norvegicus 81 Hist2h2ac ENSRNOG00000030736 ENSRNOT00000051917 1 1 1 61 2 198360438 198360456 AAGAAGACCCGCATCATCC 60 198360395 198360413 TTGAGTTCTTCGTCGTTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gzmbl3 ENSRNOG00000046301 ENSRNOT00000045209 2 1 1 82 15 36112996 36113154 CTATTAAAGCTGAAGAGTAAGGCC 59 36112937 36112956 GGCTTCACTTTGAAGTTGCT 59 NA Rattus norvegicus 81 Arhgef16 ENSRNOG00000046803 ENSRNOT00000072786,ENSRNOT00000082847 1 2 2 80 5 171633606 171633624 CATGACGCAGACAGAACAC 59 171631329 171633565 AGGGATTCAAAGAACTTCTGAC 58 NA Rattus norvegicus 81 Slc35g2 ENSRNOG00000015370 ENSRNOT00000020610 1 1 1 119 8 108880764 108880782 CTGGAGGACTGGAACAGAG 59 108855495 108855514 TCACCATGACTGTATTGGGA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tbcel ENSRNOG00000032364 ENSRNOT00000059951 3 1 1 80 8 46722113 46723470 GTTGCCAGATTTGGAGGAG 59 46722051 46722069 AGGGAATGACAGCAAACAG 58 NA Rattus norvegicus 81 Olr1126 ENSRNOG00000030845 ENSRNOT00000044295 2 1 1 60 8 18910805 18910824 ACCAAACAATTCCCTCTGAC 58 18910764 18910782 GGCTGTAATTCAGGGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zic1 ENSRNOG00000014644 ENSRNOT00000019860 2 1 1 60 8 98735684 98735703 ATGTGCGATAAGTCCTACAC 58 98734947 98735661 ACTCATGGACCTTCATGTG 57 NA DesignRelaxed Rattus norvegicus 81 Ppcs ENSRNOG00000008572 ENSRNOT00000011392 1 1 1 80 5 138469056 138469239 CTCAATCCATTAGGCTCTTCTG 59 138468997 138469015 AGGCATTTCAGAGACAGGA 58 NA Rattus norvegicus 81 Gjb6 ENSRNOG00000022116 ENSRNOT00000011742 3 1 2 82 15 37408544 37409597 TGGCTGTTATTGAAAGGTGAC 59 37408482 37408500 AGTCAGCAGTGTTAGTGGT 59 NA InUTR Rattus norvegicus 81 Gnb1 ENSRNOG00000016638 ENSRNOT00000041789 1 1 1 80 5 172962893 172965545 CCACAAACAAGGTTCATGC 58 172965587 172965607 CCACATAATTCCCAGAAGGAG 58 NA Rattus norvegicus 81 LOC100365810 ENSRNOG00000045885 ENSRNOT00000073068 3 1 1 60 8 105088060 105088078 TCTGGACTTTGGCAGTCTC 59 105088018 105088038 GAAATTCATCCCAACCGTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tssk1b ENSRNOG00000032856 ENSRNOT00000052200 3 1 1 60 11 87239965 87239983 CAAGGACCTCATCTACCGA 58 87239923 87239941 CTCATCAATGTGCAGCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd55 ENSRNOG00000013555 ENSRNOT00000018438 3 1 1 80 2 44096659 44127699 TTTGATCAGCACAAAGGTGAC 60 44127739 44127759 GTTGACATCTCCATTCGATGC 60 NA Rattus norvegicus 81 Scara3 ENSRNOG00000016177 ENSRNOT00000022020 2 1 1 85 15 42616903 42618118 AATCTTCAAGGACTGGACCC 60 42616837 42616855 AGCTTCCTGATCTCTTGCC 60 NA Rattus norvegicus 81 Htr1b ENSRNOG00000013042 ENSRNOT00000017411 3 1 1 60 8 89130084 89130102 ACAGACACCCAACAAGACC 60 89130042 89130063 TGGAGAGTCTGTTATCAACTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif3i-ps1 ENSRNOG00000055760 ENSRNOT00000081452 3 1 1 145 2 145937427 145937451 GAACATCATACTTTCCGAACAG 58 145937556 145937575 AAGAACCTGTCCTCAAACTG 58 NA Rattus norvegicus 81 Nme6 ENSRNOG00000020721 ENSRNOT00000028125 2 1 1 81 8 117923727 117923746 CCTCAGACTCTCCAACTCAC 60 117923790 117925335 GTTGATGAACAGCCTCCAG 59 NA Rattus norvegicus 81 Mrp63 ENSRNOG00000010855 ENSRNOT00000064635 1 1 2 134 15 38097014 38097032 CTAAGGGAACCTCTCCGTG 59 38097321 38097339 CTTGGAAAGACACAGTCCG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mrp63 ENSRNOG00000010855 ENSRNOT00000086854 1 1 2 90 15 38096052 38096070 ATACGTACCTCTCGCAGGA 60 38096507 38096525 CTCTCACTCTAACGGGCAC 60 NA DesignNoJunction Rattus norvegicus 81 LOC680520 ENSRNOG00000027997 ENSRNOT00000033716 2 1 1 80 11 44072699 44074142 CCAACGTTAGAGAAGGTTGAC 59 44074184 44074202 TGTTCGTTCCATCTCCTGG 59 NA Rattus norvegicus 81 Rnpc3 ENSRNOG00000017310 ENSRNOT00000088533,ENSRNOT00000087714,ENSRNOT00000023366 3 3 3 80 2 216509442 216509461 GTCCTGTCAGATAAGGGACG 60 216505056 216507947 TGTCAATGCCTTTATAGCTGC 59 NA Rattus norvegicus 81 LOC100912529 ENSRNOG00000049347 ENSRNOT00000075742 2 1 1 60 5 137564992 137565013 TCGCTATATGTTATCCACTCCA 59 137565031 137565052 AGGGCTATGCATAAAGTTTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC687401 ENSRNOG00000029050 ENSRNOT00000061413 2 1 1 98 5 24725893 24725911 ATTGCTCTCCACAAGATGC 58 24725971 24727109 GGACTCAAAGTTGTTCCTGTC 59 NA Rattus norvegicus 81 Slmap ENSRNOG00000011307 ENSRNOT00000089377,ENSRNOT00000067464,ENSRNOT00000091513 2 3 3 80 16 2125579 2125599 GCACTTTCCAACTTAGATGTC 57 2124968 2125538 ACTTCTCTAGTTCACCTTGC 57 NA Rattus norvegicus 81 Pear1 ENSRNOG00000014243 ENSRNOT00000019502 2 1 1 80 2 187116896 187116916 AGTCACTACTATTCCAACCCT 58 187116753 187116854 GCCTGGAATCTTGTTAGGG 58 NA Rattus norvegicus 81 RGD1561841 ENSRNOG00000029493 ENSRNOT00000042248 3 1 1 60 2 138489681 138489699 AACTTTCGTGCCTGTTACC 58 138489720 138489741 TTAGTTCTCATCCACATTGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mirlet7c-1 ENSRNOG00000035500 ENSRNOT00000053623 1 1 1 60 11 16052886 16052907 GTTGAGGTAGTAGGTTGTATGG 58 16052925 16052946 AGAAGGTTGTACAGTTAACTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1239 ENSRNOG00000049421 ENSRNOT00000071100 3 1 1 60 8 42301495 42301515 GGTGACTGAATTCATTCTCGT 59 42301532 42301555 GAACAAAGGTATTTGGAGATCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nup155 ENSRNOG00000013411 ENSRNOT00000082694,ENSRNOT00000046069 2 2 2 80 2 57237363 57239212 CACTAGGAAATCCAAATACCACTG 60 57239251 57239269 GCTGGGTGTTTCCATTCTC 59 NA Rattus norvegicus 81 Tmem30c ENSRNOG00000001644 ENSRNOT00000002241 3 1 1 82 11 45347038 45352633 CATTTGCAGGAAGTTCAAAGC 59 45352677 45352695 GAAGCCATTGTTTCCTGGG 59 NA Rattus norvegicus 81 Polr3g ENSRNOG00000016260 ENSRNOT00000021804 1 1 1 80 2 9566007 9566026 ATCGAAGCTGTTGGATTCAG 58 9560953 9565966 ATCTGTATCAGGAAATAGCGG 58 NA Rattus norvegicus 81 Mospd2 ENSRNOG00000003350 ENSRNOT00000084395,ENSRNOT00000004494 2 2 2 80 X 31167574 31167595 GAGTAAGAATGAGATCCAGGAG 58 31167632 31171999 CTATACTTGAAAGGATCTGTCCC 58 NA Rattus norvegicus 81 Mir3075 ENSRNOG00000046554 ENSRNOT00000074012 1 1 1 60 16 1822815 1822833 CTCTGCGGTTTGTACTGTC 59 1822856 1822875 AAGGACAGAAGACAAGAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stra6 ENSRNOG00000008312 ENSRNOT00000011074,ENSRNOT00000090588 3 2 2 80 8 62931461 62931479 GTGCTATCTTGGGTTCACG 59 62931521 62933126 GTAGTGCTTGTAGATCTTGGG 58 NA Rattus norvegicus 81 Mccc2 ENSRNOG00000017752 ENSRNOT00000023900,ENSRNOT00000076389 3 2 2 84 2 30181800 30181823 GCCTAAGATAACTGTCATAATCGG 59 30181373 30181763 GAGAAATCTTGGACTATATGCTCTG 59 NA Rattus norvegicus 81 RGD1563714 ENSRNOG00000031494 ENSRNOT00000050195,ENSRNOT00000089166 1 2 2 80 5 136074937 136074957 TCTTCGATTCTCCAGATCACC 59 136074064 136074895 TGCCAGGATCCCAATAGTC 59 NA Rattus norvegicus 81 Pabpc4l ENSRNOG00000029749 ENSRNOT00000017012 3 1 1 65 2 130658110 130658129 GTAAACAGTGTTAGCCAGCG 60 130657531 130658082 ATGTGTCTTCCAGGTTCCG 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 Olr214 ENSRNOG00000050279 ENSRNOT00000072749 1 1 1 60 1 170864584 170864602 AAGAAAGCCCTTGTCACCT 59 170864626 170864644 AACCACCATACCACATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 C2cd2 ENSRNOG00000001621 ENSRNOT00000002209,ENSRNOT00000080681 3 2 2 80 11 38383315 38385763 AGGAAGCTCAGACTCTACAG 58 38383254 38383273 TTAGTTCATGAGCCCTTGGA 59 NA Rattus norvegicus 81 Nlrp4f ENSRNOG00000015527 ENSRNOT00000041128 3 1 1 83 1 74169869 74169887 TCTCCCATAGTGATGTGGT 57 74168331 74169822 AACAGTTGGCTAACTCGAG 58 NA Rattus norvegicus 81 Tulp1 ENSRNOG00000000507 ENSRNOT00000066897 1 1 1 80 20 7937925 7937944 AAGGGACAAGAAGGGAATGG 60 7937721 7937884 AAGAGGAACACCTTCTTCTCG 60 NA Rattus norvegicus 81 Piga ENSRNOG00000003554 ENSRNOT00000044103 1 1 1 80 X 31798978 31798998 TAACATGTATCGCTCGGAGAG 60 31798189 31798937 GTGTGGACTTGAATCTTGGC 60 NA InUTR Rattus norvegicus 81 Ikzf5 ENSRNOG00000025651 ENSRNOT00000035531 3 1 2 83 1 201979748 201981132 TGTCAGGAGACTTCTTGTGG 59 201979684 201979703 TTACTCTGGAGACACCACAG 59 NA InUTR Rattus norvegicus 81 Ripk3 ENSRNOG00000020465 ENSRNOT00000027759 3 1 1 80 15 34474040 34474286 TGTCAAGTTATGGCTCAATGG 59 34473980 34473998 TTGCCCACAAATCCTAGGT 59 NA Rattus norvegicus 81 Impg2 ENSRNOG00000001622 ENSRNOT00000044900 3 1 1 80 11 46644977 46646911 TCTCCAGCTTATCAATGTGAG 58 46644917 46644936 TGAAGACTTGAACTTTGGGT 57 NA Rattus norvegicus 81 LOC503435 ENSRNOG00000024350 ENSRNOT00000031235 2 1 1 60 X 23414524 23414542 CTGCATCTACCACCATGAC 58 23414563 23414584 ATGGTAGCTGTATTGGTAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smim15 ENSRNOG00000031995 ENSRNOT00000083786 1 1 1 63 2 39316727 39317552 ATCACTACTCTAACATAAGCCC 57 39317576 39317594 CAAGCCTTCACATCAAGCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr1337 ENSRNOG00000058978 ENSRNOT00000079702 1 1 1 60 8 43872985 43873003 GGCTTTGGATGGGAAAGTG 59 43873025 43873045 GTGGAAGCAATAAAGTTGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1337 ENSRNOG00000058978 ENSRNOT00000079702 2 1 1 60 8 43872988 43873008 TTTGGATGGGAAAGTGATCTC 58 43873027 43873048 GAAGTGGAAGCAATAAAGTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gkap1 ENSRNOG00000019272 ENSRNOT00000026070,ENSRNOT00000083408 2 2 2 80 17 6799339 6799358 CTGAAATGTTTGAAGCCGAC 58 6799398 6802163 TTTCATAATCCTGTCTGTGCTC 59 NA Rattus norvegicus 81 Id4 ENSRNOG00000016099 ENSRNOT00000021550 1 1 1 268 17 16694812 16694830 CTACATCCTGGACCTGCAG 60 16693618 16693636 TAATTTCTGCTCTGGCCCT 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Iqgap1 ENSRNOG00000012002 ENSRNOT00000018021 2 1 1 80 1 142551911 142552653 TGCATTCAGTCACAGTGGA 59 142551849 142551868 GTCTTTATGGGAGTGCAGGT 60 NA Rattus norvegicus 81 Spata13 ENSRNOG00000013707 ENSRNOT00000018407 3 1 1 80 15 41055531 41055551 CAGAAGATCTGCAAATACCCG 59 41055590 41056673 TATATTGTTGTAGTCGCTGTGC 59 NA Rattus norvegicus 81 Epor ENSRNOG00000012619 ENSRNOT00000017369 1 1 1 85 8 22972745 22973123 TCTTACCAGCTCGAAGGTG 59 22972678 22972696 GAACACCAGAAACGCATGG 60 NA Rattus norvegicus 81 AABR07013776.1 ENSRNOG00000048082 ENSRNOT00000072487 2 1 1 60 2 256154248 256154266 GTGATGACAACCCTTGGAG 58 256154206 256154227 CTTCTCTGATCATTCCATCGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911107 ENSRNOG00000048576 ENSRNOT00000074842 1 1 1 80 17 32076046 32076065 CTCCGCTACTCTAGCTATGG 59 32073234 32076004 TTGCTCAAATGAGATGCCTG 59 NA Rattus norvegicus 81 Stmn4 ENSRNOG00000053334 ENSRNOT00000084753,ENSRNOT00000091567,ENSRNOT00000087709 2 3 3 80 15 43021141 43022137 GAAGGAAGTACCAGGAAGC 58 43022179 43022199 TAGCTTTCTGGATTACCTCAC 57 NA Rattus norvegicus 81 Fancb ENSRNOG00000003346 ENSRNOT00000004456,ENSRNOT00000082358 1 2 2 92 X 31130158 31130176 GCAAACTCTTGGAAGGCTC 59 31129020 31130104 AAGACCACCCTGTTCTAACTG 60 NA Rattus norvegicus 81 Rbm42 ENSRNOG00000024278 ENSRNOT00000087437,ENSRNOT00000031254 2 2 2 85 1 89099529 89099629 GATGAATGGGAAGTACGTGG 59 89099463 89099481 TCTTACGGACCACATCCAG 59 NA Rattus norvegicus 81 AABR07013931.2 ENSRNOG00000053997 ENSRNOT00000082326 1 1 1 60 2 264180148 264180166 GCAATGGACATCCAAGCAC 60 264180187 264180208 TGTTCTTCTCTGGTCTCATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fcrl1 ENSRNOG00000034230 ENSRNOT00000052347 2 1 1 80 2 186723640 186723662 TCCTCTTCTTTCCTTCCAGC 60 186723700 186723723 GTGTCTTCATAGTCCACATAAACG 60 NA Rattus norvegicus 81 Fcrl1 ENSRNOG00000034230 ENSRNOT00000052347 3 1 1 81 2 186715832 186715852 CAATATTACTGTGCAGCTGAC 58 186715895 186716082 GAGACACTGGAACTCTGAC 57 NA Rattus norvegicus 81 Lmbrd2 ENSRNOG00000054751 ENSRNOT00000077646 3 1 1 80 2 58544391 58544409 TCCAGATGGAATCATGCCA 59 58544450 58555298 ATGAAAGGTAACAGAATCCACG 59 NA Rattus norvegicus 81 Cadps ENSRNOG00000008570 ENSRNOT00000012153 1 1 1 80 15 15641557 15642577 TCCGTACAGACTATAACTTGTG 58 15642617 15642636 CGTATCTAACAACGAGTGGG 58 NA Rattus norvegicus 81 Paip2b ENSRNOG00000014092 ENSRNOT00000019399 1 1 1 80 4 115488923 115492859 GATTTCAACAGACAGGTGGAG 59 115488863 115488882 CTCTTCATCCAGCATCTCCT 59 NA Rattus norvegicus 81 LOC100911849 ENSRNOG00000045969 ENSRNOT00000072508 3 1 1 60 8 17964725 17964745 TCTTGAGAATGCCATCTTCTG 58 17964685 17964705 AGATGTGATGCACAAGTAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r37 ENSRNOG00000043280 ENSRNOT00000023732 3 1 2 85 1 99135008 99135029 TGTAGAAGGATTAATTCGGCAC 59 98959404 99134966 GGCTATCAATATCCCATGAAGAG 59 NA Rattus norvegicus 81 Rhod ENSRNOG00000019220 ENSRNOT00000026092 1 1 1 86 1 219674980 219674998 GTTTGAGCGCTATAACGCC 60 219674274 219674930 TCATAGTCATCTTGCCCGG 59 NA Rattus norvegicus 81 Umod ENSRNOG00000015557 ENSRNOT00000021027 2 1 1 80 1 189194744 189194765 AACTTTGAATGCTCTTACCCTC 59 189192885 189194704 GATGTTCAAGGCACTAACCA 58 NA Rattus norvegicus 81 Tmem190 ENSRNOG00000042528 ENSRNOT00000066383 2 1 1 82 1 72631083 72631794 TTCTACCCATGGAGTTGTGAG 60 72631021 72631039 CAGAGGTTGGGATTCTCGA 59 NA Rattus norvegicus 81 Btbd1 ENSRNOG00000019529 ENSRNOT00000026595 3 1 1 80 1 143620616 143620636 GCTGTATCAATAGGTTCCAGC 59 143615019 143620576 TGTTAACTGTGAACCTGATCC 58 NA Rattus norvegicus 81 Oosp2 ENSRNOG00000036624 ENSRNOT00000042091 1 1 1 80 1 227998715 228010781 TGTTGTTCATCTCGGAAGTC 58 227998654 227998673 CATAAAGTGACTCTCGGGTG 58 NA Rattus norvegicus 81 Tada2b ENSRNOG00000027326 ENSRNOT00000037061 2 1 1 274 14 79446083 79446101 GAAGTACTGCGTGTACTGC 59 79454046 79454064 CAACATGAGCAGCCATGTC 60 NA DesignNoJunction Rattus norvegicus 81 Ubl7 ENSRNOG00000007442 ENSRNOT00000010083 3 1 1 80 8 62699745 62699764 TCTATGGTATTCAGCCTGGA 58 62699807 62703796 CCACTGGTTCAGGTTTCTG 58 NA Rattus norvegicus 81 Bnip3l ENSRNOG00000009820 ENSRNOT00000014798 1 1 1 80 15 43652583 43652601 CTTCACCACAAGAAGACGG 59 43648170 43652540 CTTCTTCTGACTGAGAGCTG 58 NA Rattus norvegicus 81 Kdelc1 ENSRNOG00000011740 ENSRNOT00000016285 3 1 1 81 9 50878144 50878162 TCCAGGGATATCGTGATGC 59 50877961 50878103 ACATCATATCCAGACTTACTCGG 60 NA Rattus norvegicus 81 Tfg ENSRNOG00000001633 ENSRNOT00000088152,ENSRNOT00000048417 2 2 2 80 11 46184985 46185004 ATGATGCAGCGAGTATTCAG 58 46185046 46191190 AAGATCTCCATCCTCATCCT 57 NA Rattus norvegicus 81 Pogz ENSRNOG00000053599 ENSRNOT00000082849,ENSRNOT00000084023 2 2 2 80 2 196037711 196037843 ATGTCTTACTCGAGGCTTGG 60 196037885 196037904 GAGAGGAGGTGGAAGATACG 59 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000049859,ENSRNOT00000047817,ENSRNOT00000002220,ENSRNOT00000002223,ENSRNOT00000063864,ENSRNOT00000070871,ENSRNOT00000072140 3 7 7 84 11 46324401 46324419 TGATCAGGTCCACTCAGTG 59 46306473 46313974 GGTAACATTCTGAATCACTTGC 58 NA Rattus norvegicus 81 Nos3 ENSRNOG00000009348 ENSRNOT00000013058 3 1 1 80 4 7335884 7336699 GATACAACATACTTGAGGATGTGG 59 7335827 7335845 CTGCCTTGTCTTTCCACAG 59 NA Rattus norvegicus 81 Zfp282 ENSRNOG00000026981 ENSRNOT00000037248 1 1 1 89 4 77567756 77569393 AGAATCCATCACTGACTCCC 59 77569445 77569463 TCCTGCTGATCCCATACAC 59 NA Rattus norvegicus 81 Bax ENSRNOG00000020876 ENSRNOT00000028328,ENSRNOT00000087061 3 2 2 83 1 101456401 101456419 CATCCACCAAGAAGCTGAG 58 101455556 101456354 CAGCAATCATCCTCTGCAG 59 NA Rattus norvegicus 81 Vps52 ENSRNOG00000000470 ENSRNOT00000000549 2 1 1 80 20 5440186 5440769 AGTGGATGTTCACATCCAGG 60 5439983 5440002 TAGTGTCGAAGATCCACACC 59 NA Rattus norvegicus 81 Epha6 ENSRNOG00000029184 ENSRNOT00000047310 2 1 1 80 11 42476113 42476131 ATATCCGAGTGAGGACTGC 59 42476174 42514156 TGTCAGAAGTTTCGTCTCCT 59 NA Rattus norvegicus 81 Vom1r100 ENSRNOG00000055950 ENSRNOT00000085924 3 1 1 82 4 122006888 122006906 CCAGTCACTATGACATGCC 58 122006952 122008180 TATGAGAACAGTGGCTGCT 59 NA InUTR Rattus norvegicus 81 Vav1 ENSRNOG00000050430 ENSRNOT00000073294 2 1 1 80 9 9637605 9638315 CCAAGACAGACAGGTATGC 58 9637543 9637562 CCTTGAGGTCATAAGAGTCC 57 NA Rattus norvegicus 81 Taar6 ENSRNOG00000016089 ENSRNOT00000021529 1 1 1 60 1 22536350 22536371 TCTTGGTGATGATATCCATCCT 59 22536392 22536410 ATGAGGAAGTTGGTGGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tapbp ENSRNOG00000029500 ENSRNOT00000044975 1 1 1 122 20 5471197 5475187 CATGGCAACAGTGGTACTG 59 5471093 5471111 GAGGGAGCATCTTCCAGAG 59 NA Rattus norvegicus 81 Itln1 ENSRNOG00000004678 ENSRNOT00000006196 1 1 1 80 13 89923038 89923625 GCCTCTACCAGAAGTACCC 59 89923669 89923687 CATAGACCACAGGTAACGC 58 NA Rattus norvegicus 81 Olr736 ENSRNOG00000052729 ENSRNOT00000080981 1 1 1 60 3 79017729 79017750 ATTGTTCTTTGGTCCATGTGTC 60 79017690 79017709 GTCTACAGGCAGGGTATCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klk1c2 ENSRNOG00000029237 ENSRNOT00000025701 1 1 1 80 1 99981726 99981843 CCCTCTGAGATGGTAGTAAGTC 59 99981667 99981687 GTAGGTTTCGATGCACTTCTC 59 NA Rattus norvegicus 81 Mios ENSRNOG00000007924 ENSRNOT00000084163,ENSRNOT00000010952 2 2 2 80 4 34255978 34255998 CTGATGGAGAGTTATGTGGAC 58 34256038 34259242 AACATCTAAAGGTGAACCCTG 58 NA Rattus norvegicus 81 Gdpd5 ENSRNOG00000036859 ENSRNOT00000055321 3 1 1 80 1 164416030 164417123 TCTTCTCAGAGATCAGTGATGG 59 164417163 164417182 TGGCATAGGTGTCGTAACTG 60 NA Rattus norvegicus 81 Tmem120a ENSRNOG00000001441 ENSRNOT00000001960 2 1 1 80 12 23989983 23991677 CCAAGGTATCCAGGAAACAC 58 23991718 23991738 GAGTTTGTACAGTTGTCCTGG 59 NA Rattus norvegicus 81 Cldnd1 ENSRNOG00000001657 ENSRNOT00000002260 1 1 1 80 11 43990898 43990916 ACTTGGGATTGTGGAGACG 60 43989267 43990856 CAAATGACTCTGTCCTTTCCG 59 NA Rattus norvegicus 81 Cldnd1 ENSRNOG00000001657 ENSRNOT00000002260 2 1 1 81 11 43987911 43987929 ATTGGACTTTGTGCCTGTG 59 43987737 43987866 TACACAGACCTGCAAGGAG 59 NA Rattus norvegicus 81 Pdp1 ENSRNOG00000016180 ENSRNOT00000090376,ENSRNOT00000067823 3 2 3 101 5 25580000 25583505 CAGACGAATTGGAATCCCG 59 25579917 25579935 TCACAGTTACGGACGAGAG 59 NA Rattus norvegicus 81 Ttc28 ENSRNOG00000032590 ENSRNOT00000046920 3 1 1 80 12 51392377 51392395 CCATTCCAGTCTCCCTGAG 59 51391227 51392333 ATAGGTCAAACCCGAGAGC 59 NA Rattus norvegicus 81 Retnla ENSRNOG00000001955 ENSRNOT00000002676 1 1 1 80 11 54545127 54545150 GTGAATACTGATGGAACCTTAGAC 59 54544623 54545092 AGAGGGATAGTTATCTTGATGGG 59 NA Rattus norvegicus 81 Olr714 ENSRNOG00000049728 ENSRNOT00000051799 2 1 1 60 3 78361614 78361633 ATCTTCCTTTCTGTGGTCCC 60 78361573 78361593 AAGAGCGGGTATATGTCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp644 ENSRNOG00000002112 ENSRNOT00000002882 1 1 1 80 14 4182267 4182287 TCCATTAAACGAAGACAGTCC 58 4182327 4197694 TGCTTACAATCTATGGCTGAG 58 NA Rattus norvegicus 81 Rergl ENSRNOG00000008130 ENSRNOT00000010728 3 1 1 80 4 173633361 173634836 ACCCATGTTCTCAATCACAG 58 173633300 173633319 CGTACACAATCACAAACCCA 59 NA Rattus norvegicus 81 Dcbld2 ENSRNOG00000055281 ENSRNOT00000084060 1 1 1 80 11 44256652 44256670 GCCAACAATGTCACTTCCA 59 44254584 44255530 TAGAGTCCCATAGCAACCAC 59 NA Rattus norvegicus 81 Ppil1 ENSRNOG00000000523 ENSRNOT00000068527 3 1 1 126 20 6863206 6864345 TACCTGGAGACTAGCATGG 58 6863098 6863116 TGATCCTGTGGAACTTGGT 59 NA Rattus norvegicus 81 Hist1h3f ENSRNOG00000028975 ENSRNOT00000040906 1 1 1 164 2 198380657 198380675 CTACCAGAAGTCGACCGAG 59 198380511 198380529 TTGGTGTCCTCGAACAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pole ENSRNOG00000037449 ENSRNOT00000067453 1 1 1 80 12 52416116 52416136 ACACATCAACGAGATCAACAC 59 52415812 52416075 CGGAATAACAATGGGACCTG 59 NA Rattus norvegicus 81 AC128084.1 ENSRNOG00000056310 ENSRNOT00000040493 2 1 1 60 9 65172480 65172498 TCAAGCACTCAAAGAGCAG 58 65172522 65172540 TCCTTCTGATCGTTCTCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msto1 ENSRNOG00000020357 ENSRNOT00000027579 3 1 1 80 2 188214715 188214881 TACAACCATGACGGTGAGAC 60 188214654 188214672 TTCCAAGTACCTGGGTTCC 59 NA Rattus norvegicus 81 Prdm15 ENSRNOG00000001620 ENSRNOT00000046318 1 1 1 80 11 38340858 38341473 TGTTTATCTGGTGTGAAGACTG 58 38340799 38340817 AGTCCTTGACCATGACCAC 59 NA Rattus norvegicus 81 RGD1311847 ENSRNOG00000023700 ENSRNOT00000030617 1 1 1 80 16 19092037 19093267 GGAAAGGTGTTCTTGGATCTG 59 19091977 19091995 CGACTTTAAGCTGGACTGG 58 NA Rattus norvegicus 81 Cecr2 ENSRNOG00000011566 ENSRNOT00000015499 3 1 1 80 4 153274014 153284058 AAGAGACATCACGCCTCAG 60 153284101 153284120 GGCTTTCCTTCTTCAAGCTC 59 NA Rattus norvegicus 81 Tp53inp1 ENSRNOG00000007964 ENSRNOT00000010591 3 1 1 81 5 24411088 24411621 TTGACTTCATAGATACCTGCAC 58 24411663 24411681 TCTGCTGAGGACTCTTCAC 59 NA Rattus norvegicus 81 Pak6 ENSRNOG00000007925 ENSRNOT00000010471,ENSRNOT00000089434 1 2 2 80 3 110479616 110479634 AGCATGTTCCTGTCCACTC 60 110479676 110482326 AGAATTGAGCTTGTTCTGTGG 59 NA Rattus norvegicus 81 Klf2 ENSRNOG00000014205 ENSRNOT00000019052 3 1 1 61 16 19223858 19223876 CTACACCAAGAGTTCGCAC 59 19223248 19223834 GATAAGGCTTCTCACCTGTG 58 NA DesignRelaxed Rattus norvegicus 81 LOC100361087 ENSRNOG00000042929 ENSRNOT00000032218,ENSRNOT00000067037 2 2 2 81 13 88638292 88638310 TTAACAAGACTGCTGAGGC 58 88637362 88638247 TGGACTGACCTTTCATCCT 58 NA Rattus norvegicus 81 Olr179 ENSRNOG00000048628 ENSRNOT00000039989 2 1 1 60 1 169844629 169844649 TGTATGTGATGATTCCACCTG 58 169844589 169844607 ATCTGTTTGGTTCTCACCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1308742 ENSRNOG00000022033 ENSRNOT00000035829 3 1 1 82 3 14285301 14288634 CTATCTTAACAATTCAGGCCCA 58 14285240 14285258 ATGCTTTGACACGACTTCC 59 NA Rattus norvegicus 81 Rn60_X_0631.1 ENSRNOG00000051031 ENSRNOT00000076130 1 1 1 60 X 62457581 62457599 CTCAAAGTACCTCCTGCCA 59 62457539 62457558 GAGTTGCTGTTTGTCTGTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gja8 ENSRNOG00000046703 ENSRNOT00000071622 1 1 1 60 2 199051897 199051916 TGCCACATCATCTTCAAGAC 58 199051856 199051874 ACAGGAAGTAATGGCCCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dydc1 ENSRNOG00000011165 ENSRNOT00000014862 2 1 1 81 16 18653763 18654223 GCATGGAGCAATTGAGACAG 60 18654267 18654285 TCCATCATTTCCTGCTCCA 59 NA Rattus norvegicus 81 Cyp2b3 ENSRNOG00000033164 ENSRNOT00000077725,ENSRNOT00000034845 1 2 2 80 1 83191356 83192671 ACTGAAGAATCATCAGGGAGTC 60 83192709 83192730 ACAATGGAGCAGATTATGTTGC 60 NA Rattus norvegicus 81 Rn60_5_0437.1 ENSRNOG00000033953 ENSRNOT00000047860 3 1 1 60 5 38981282 38981300 AGGTTGCTATTGACATGGG 58 38981324 38981342 TTCTCATTCTGGTCCACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910120 ENSRNOG00000050642 ENSRNOT00000072645 2 1 1 60 8 42817189 42817209 GGATTAACAAAGCAGCCTGAG 60 42817229 42817249 CATAGATGACCAGGAACAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdadc1 ENSRNOG00000012209 ENSRNOT00000089963,ENSRNOT00000068353 3 2 2 81 15 39883053 39886439 ATAGTGAATGCTGGAGTTAACC 58 39882993 39883012 CAGAACTAGAAGCCTCAGTG 58 NA Rattus norvegicus 81 Cox7a2 ENSRNOG00000042903 ENSRNOT00000066084 1 1 1 82 8 87210399 87212439 TGTTTCAGGAGGATAATGGGA 59 87210337 87210355 CAGAAGCATTGTGGCTCTG 59 NA Rattus norvegicus 81 Mir3589 ENSRNOG00000036269 ENSRNOT00000054392 2 1 1 61 X 143516996 143517015 CGAACTTGGTGATACTCCAG 58 143517039 143517057 ATGTTTCTGCCAGGTTAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lsamp ENSRNOG00000031852 ENSRNOT00000047907,ENSRNOT00000042024 1 2 2 80 11 58834170 58834188 CCCTCAAATGTGAAGCCTC 59 58833652 58834127 CGTTTGCACTGTTTATCCTG 58 NA Rattus norvegicus 81 Mrpl10 ENSRNOG00000009567 ENSRNOT00000013114,ENSRNOT00000065555 3 2 2 60 10 84982899 84982918 CGGATCTTAAAGAGCGTTCC 59 84983676 84983695 GAATGGTGTCATCAATGCAG 58 NA DesignNoJunction Rattus norvegicus 81 Olr733 ENSRNOG00000056633 ENSRNOT00000087245 3 1 1 60 3 78973775 78973797 CTCCTCAATCCTCTCATCTACTC 59 78973737 78973758 GATCCTTCATGGCTTTCTTCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017789.1 ENSRNOG00000049030 ENSRNOT00000075456 2 1 1 73 15 31097318 31097336 TTACTCCTAGGCCTTCACC 58 31097508 31097526 CTTTGTTTCACCTGCTGCT 59 NA DesignNoJunction Rattus norvegicus 81 Zfp42l ENSRNOG00000033956 ENSRNOT00000040592 2 1 1 98 4 157057951 157057971 TTTGGAGTACATGACAAAGGG 58 157058031 157058130 GTAAAGCCTGACAGCTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Syt3 ENSRNOG00000019318 ENSRNOT00000077427,ENSRNOT00000026251 1 2 2 82 1 100395182 100395202 CTGATACCAATGACAGGTGTC 59 100395246 100398844 CACGGAAATGTCTGCATCC 59 NA Rattus norvegicus 81 Rbks ENSRNOG00000004710 ENSRNOT00000006452 1 1 1 82 6 26096558 26098866 AGAGTGAGGCTGAGATCCT 59 26098912 26098930 CCGTTCTAGGAGAACCAGC 60 NA Rattus norvegicus 81 Tmco2 ENSRNOG00000012340 ENSRNOT00000016492 3 1 1 85 5 140023897 140023918 CAAATCATCCTTGGGATTTCCT 59 140020272 140023852 TTCTGAATTGACCGAATGCT 58 NA DesignNoJunction Rattus norvegicus 81 Tmem178a ENSRNOG00000007907 ENSRNOT00000010927 1 1 1 80 6 3657753 3700248 CCTGAAAGGTATTGCACAGC 60 3700288 3700309 TTGAAAGGAATGTTCCGTAAGC 60 NA Rattus norvegicus 81 LOC100911241 ENSRNOG00000039251 ENSRNOT00000060114 1 1 1 82 18 35291728 35291746 TTCTCAGCAACATGAAGCC 59 35291792 35293373 GCTCACAGCATCTACAGAG 58 NA Rattus norvegicus 81 Egr4 ENSRNOG00000015719 ENSRNOT00000021097 1 1 1 127 4 117295373 117295391 AACAGACTCCTGCTTCCTG 59 117295264 117295282 ACATGAGGTTGAAGAGGGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syce1 ENSRNOG00000024073 ENSRNOT00000033074 2 1 1 80 1 213527197 213527215 AAAGAAAGCCAGTGAGGAG 57 213526595 213527154 TCTTCGTGTAATGAGTCCAC 57 NA Rattus norvegicus 81 LOC303448 ENSRNOG00000054719 ENSRNOT00000089255 2 1 1 128 10 78688505 78688524 ACACATACATCCACATCCAC 58 78688324 78688342 ATAGAAGTTTGCAGTGCCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rln1 ENSRNOG00000060867 ENSRNOT00000088193 3 1 1 139 1 247486053 247486072 GACCAAGTCATTCAGGTGTG 59 247483824 247485951 GATGGCACAACTTCTGCAG 60 NA Rattus norvegicus 81 Spef1 ENSRNOG00000021247 ENSRNOT00000028861 3 1 1 80 3 123716870 123716890 TGGAGATGCACAATTATGTCC 59 123716300 123716828 TCAGCACCTTTCTGTTCAG 58 NA Rattus norvegicus 81 Srp19 ENSRNOG00000020204 ENSRNOT00000027418 2 1 1 81 18 27119266 27120619 CAGTTCCCATCACGTAAGTC 58 27120663 27120681 CTCCTGACTTCTGAGTCCT 58 NA Rattus norvegicus 81 Pdlim4 ENSRNOG00000050794 ENSRNOT00000074616 1 1 1 80 10 39396267 39399925 CTCTCAGTAAGCAGGCCTG 60 39396205 39396224 GTCAATGTGGATCCTATGCG 59 NA Rattus norvegicus 81 Cyp4f37 ENSRNOG00000048979 ENSRNOT00000067074 1 1 1 80 7 14823826 14823846 CTTGGAGTCCAAGACTAAGTC 58 14823886 14824566 TTTCCATGTTCATCCTTAGCC 58 NA Rattus norvegicus 81 Cyp4f37 ENSRNOG00000048979 ENSRNOT00000067074 3 1 1 81 7 14824609 14824817 CATGTTTGGAGGCCATGAC 59 14824862 14824880 CTCCTGGTATTCTGGGTGC 60 NA Rattus norvegicus 81 Ypel4 ENSRNOG00000060130 ENSRNOT00000083592 2 1 1 81 3 72137645 72137988 TTTAACTCCGTGGTCAACG 58 72138033 72138051 AAATGTCAGCTACCGAGTG 58 NA Rattus norvegicus 81 Mgat5 ENSRNOG00000003614 ENSRNOT00000004995 1 1 1 80 13 44144885 44146981 TCTTAAACCAGAAGATTGAGCC 59 44147021 44147040 CGATGAAAGCGTTGATTCTC 58 NA Rattus norvegicus 81 C3 ENSRNOG00000046834 ENSRNOT00000073042,ENSRNOT00000075494 2 2 2 80 9 9724316 9724418 TCCATCACAGCCAGATTCC 60 9724461 9724480 CTTATCCTCATCCTGGACCC 59 NA Rattus norvegicus 81 Mmp2 ENSRNOG00000016695 ENSRNOT00000022679 1 1 1 80 19 15556412 15556430 CTGCAAGCAAGACATTGTC 58 15552930 15556368 CGCCAAATAAACCGATCCT 58 NA Rattus norvegicus 81 Tmem9b ENSRNOG00000013591 ENSRNOT00000018309,ENSRNOT00000067388 1 2 2 80 1 174370116 174372220 CTGTCACAATCAAGGTTACCA 58 174370056 174370080 CTAAGGTAAGGTATACCATGTACAG 58 NA Rattus norvegicus 81 Ak3 ENSRNOG00000052506 ENSRNOT00000079875 1 1 1 80 1 247159491 247159509 CGGATGATGTCATGACTCG 58 247149356 247159447 TTGGAAATCCGTCCAACAG 58 NA Rattus norvegicus 81 Asna1 ENSRNOG00000003747 ENSRNOT00000067518 3 1 1 80 19 26134281 26134830 CCTTCATCTCACAGATGTGC 59 26134220 26134240 AGGTCTCTTCTAACTTGGAGG 59 NA Rattus norvegicus 81 Itk ENSRNOG00000006860 ENSRNOT00000009211 1 1 1 80 10 31447933 31452344 TGGACACAGGTAAAGAAGGA 58 31447872 31447890 CCTTGGTGAAGACAGAGAC 58 NA Rattus norvegicus 81 Asphd2 ENSRNOG00000061004 ENSRNOT00000079190,ENSRNOT00000086782 1 2 2 85 12 50273628 50273646 ATCTCAGTGCTGAGTCCTG 59 50273695 50277576 GTCTTCAGACCTAGGTGGC 60 NA Rattus norvegicus 81 Rundc3a ENSRNOG00000020970 ENSRNOT00000089616 2 1 2 171 10 90349333 90349448 GCTATTTCGGAGACACAGC 59 90350652 90350671 TTCGTTGGATTTGAAGCTCG 59 NA InUTR Rattus norvegicus 81 LOC100910474 ENSRNOG00000008521 ENSRNOT00000011278 2 1 1 60 12 33182671 33182692 AAATCCGTCATATCCTAGTCAC 58 33182632 33182653 AGCATCTCTACTTCTTCCTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Farsa ENSRNOG00000003149 ENSRNOT00000004370 1 1 1 80 19 25976982 25977001 AGCTCCCAATGGACTATGTC 59 25977040 25977152 AGGTATACTTGTAGCCTTGTGAG 60 NA Rattus norvegicus 81 Rbbp7 ENSRNOG00000005157 ENSRNOT00000066676 2 1 1 80 X 33657237 33664534 CTTCCTGAAGTGACTAAACCA 58 33657177 33657196 CTGCTCATCAGATGTATGGG 58 NA Rattus norvegicus 81 LOC100911939 ENSRNOG00000048942 ENSRNOT00000043810 3 1 1 60 8 42285276 42285300 TTACCACTCCTACCATCTTTATCTC 60 42285318 42285336 CTGATGTGGAAGATGCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912610 ENSRNOG00000033415 ENSRNOT00000044186 3 1 1 115 5 77999068 77999410 ATGTGGACAAGCTCAATGG 58 77998971 77998989 TCCAAGACATCGATGTGCT 59 NA Rattus norvegicus 81 Prl3d2 ENSRNOG00000050607 ENSRNOT00000075056 2 1 2 88 17 39725095 39725116 GATGAAAGACAGGATACTTCCC 58 39724815 39725049 GAGACAGTTTGATTTCATGGAC 58 NA Rattus norvegicus 81 mrpl11 ENSRNOG00000019970 ENSRNOT00000084650,ENSRNOT00000027091 2 2 2 91 1 220244655 220244673 TTGAGCTCAAGATTGGGCA 60 220244728 220244833 CACCTCTTTCCCTGTTTGC 59 NA Rattus norvegicus 81 Cmss1 ENSRNOG00000027888 ENSRNOT00000031464 2 1 1 80 11 45328804 45330211 GACATTCCCGAGATAAGAAAGG 59 45330251 45330270 CTTCAAGGAGTCCGATTTGC 59 NA Rattus norvegicus 81 Lrrc30 ENSRNOG00000030389 ENSRNOT00000049720 3 1 1 60 9 115850333 115850352 ATCGTGGTCCTAAACTTGTG 58 115850292 115850310 GGAGACTGACTTCTTTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp384 ENSRNOG00000017066 ENSRNOT00000081640,ENSRNOT00000023192,ENSRNOT00000055985,ENSRNOT00000023240,ENSRNOT00000036654 2 5 6 82 4 157547895 157550323 CTCTCCAACCTGCAGTCTC 60 157550369 157550387 TCTGTGTATGCTCGGTGAC 60 NA Rattus norvegicus 81 Dctn1 ENSRNOG00000010048 ENSRNOT00000068102,ENSRNOT00000078175 3 2 2 80 4 114892469 114892713 AAGGAGAAAGAGTTTGAGGAG 57 114892754 114892773 CTTGAGCTCTGTCTTCTCTG 58 NA Rattus norvegicus 81 Gcm2 ENSRNOG00000015008 ENSRNOT00000020244 2 1 1 81 17 21495161 21495179 CGAGGACACAGTGGATACC 60 21495224 21495914 CATGAACTCCTTTGGCCTG 59 NA Rattus norvegicus 81 Pdcd1lg2 ENSRNOG00000016136 ENSRNOT00000021614 1 1 1 80 1 247607147 247607165 ACTTCAGCTGCATGTTCTG 59 247607209 247610563 TGGGTTCCATCCAACTCAG 59 NA Rattus norvegicus 81 Tmem136 ENSRNOG00000021793 ENSRNOT00000038647 3 1 1 66 8 47401205 47401223 CTTCATCGATGGTCCTTGG 58 47399763 47399781 AACGTGAACTTGGAGAGGT 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_15_0251.1 ENSRNOG00000051342 ENSRNOT00000076862 2 1 1 60 15 21114213 21114232 ACTCCCTTTCAAACATGGTC 58 21114172 21114191 ATTGGTGTTGTTAGTGGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il27ra ENSRNOG00000005747 ENSRNOT00000085630,ENSRNOT00000007726 3 2 2 80 19 25152819 25152942 AACCTTACATAAAGGAGGTGAG 58 25152760 25152778 GCTGTAGCTCCATTTCCTC 58 NA Rattus norvegicus 81 AABR07054000.1 ENSRNOG00000050784 ENSRNOT00000072928 2 1 2 81 3 134441437 134441456 GAGTGTGAACTTCCTGAAGG 58 134441497 134441520 CAGGAAGGTCAGTATTACATGC 59 NA Rattus norvegicus 81 Spink12l1 ENSRNOG00000045937 ENSRNOT00000075045 1 1 1 82 X 43015835 43015853 TTCTCAGCAACATGAAGCC 59 43014208 43015789 GCTCACAGCATCTACAGAG 58 NA Rattus norvegicus 81 Cyp2ac1 ENSRNOG00000048329 ENSRNOT00000072826 2 1 1 82 9 23435081 23437489 TATATTCCAAAGGGCACTGAG 58 23435019 23435037 AAAGCATCTGGTGTTTCCC 58 NA Rattus norvegicus 81 Wdr49 ENSRNOG00000024628 ENSRNOT00000039524,ENSRNOT00000074278 3 2 2 81 2 173798990 173800674 CGGCTCAATTTAATTGCAACTG 60 173798930 173798949 CACCAACTGGTTTAGACAGG 59 NA Rattus norvegicus 81 Atg9b ENSRNOG00000023449 ENSRNOT00000029724 3 1 1 80 4 7320809 7320910 TGGTCAAGTGATGGTTCCA 59 7320953 7320972 CTTTGGGAACAGATTCTGGG 59 NA Rattus norvegicus 81 Lsr ENSRNOG00000021053 ENSRNOT00000044678,ENSRNOT00000028585 2 2 2 80 1 89384640 89384748 ATCTTCAGAAGTACGAAGTGG 58 89384580 89384603 TTCTCCATATAGTATAGGACCCTC 58 NA Rattus norvegicus 81 Slc17a4 ENSRNOG00000022505 ENSRNOT00000088939,ENSRNOT00000059494 3 2 2 80 17 43465923 43467093 TATAGCTCCACGGTATGCTG 59 43467136 43467154 ACAGTAGGAGCTATGCCTC 58 NA Rattus norvegicus 81 Hibch ENSRNOG00000028557 ENSRNOT00000040650,ENSRNOT00000029677 1 2 2 80 9 53505064 53505084 CTCAACAGACCCAAGTTACTC 58 53503299 53505022 TCGTTCCCACTTCTTTAGC 58 NA Rattus norvegicus 81 Hibch ENSRNOG00000028557 ENSRNOT00000040650,ENSRNOT00000029677 3 2 2 80 9 53475060 53475080 TTTCAGTCCATGGTCAATTCC 59 53465071 53475019 CAGGAAACAGTCCTATTCCC 58 NA Rattus norvegicus 81 RGD1560755 ENSRNOG00000059911 ENSRNOT00000078964 1 1 1 82 16 70906044 70906165 CCAATAAACAAGAATCTCTGGTCC 60 70906206 70906224 GGGTAGAGGATGAGGAGGA 59 NA Rattus norvegicus 81 LOC100910891 ENSRNOG00000039560 ENSRNOT00000078029,ENSRNOT00000020648 1 2 2 67 17 15477420 15477444 CCAAGGAATTTGGAACATCTATACC 60 15476634 15476655 CACATCATTGTCACATTGATGC 59 NA DesignNoJunction Rattus norvegicus 81 Shc1 ENSRNOG00000020657 ENSRNOT00000056652,ENSRNOT00000028038 1 2 2 81 2 188750424 188750442 GAATGCCGATCACTCTCAC 58 188750486 188750881 TGATGGTTGGCAATGATCTG 59 NA Rattus norvegicus 81 Arid3b ENSRNOG00000019677 ENSRNOT00000068340 2 1 1 80 8 62574502 62575562 GAATCAATGGCAGGGAAGAC 59 62574441 62574461 TATTGATGCTCCCAATGTTGC 59 NA Rattus norvegicus 81 Mmp16 ENSRNOG00000005708 ENSRNOT00000050137 1 1 1 80 5 31679884 31688971 GACAGAAACACAATTGACTGG 58 31689011 31689031 GATGTTGAATTTAGAGCTGCC 58 NA Rattus norvegicus 81 Il13 ENSRNOG00000007652 ENSRNOT00000010121 2 1 1 93 10 38984084 38985330 ACCAGAAGACTTCCCTGTG 59 38983439 38983458 ATGTTGGTCAGGGATTCCAG 60 NA Rattus norvegicus 81 Hpcal4 ENSRNOG00000050983 ENSRNOT00000074347 2 1 1 80 5 140876276 140876294 GGGCCTTTGAGATGTACGA 60 140876332 140878315 TATAGATAGCCTCAATGATCTCCAG 59 NA Rattus norvegicus 81 LOC102550314 ENSRNOG00000050229 ENSRNOT00000074473,ENSRNOT00000076254 3 2 2 60 15 5808516 5808536 AGAAAGACCCAAGAAATCCTC 58 5808557 5808576 TCACAGATTCCAGAAGACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Efcab12 ENSRNOG00000026176 ENSRNOT00000041464 1 1 1 80 4 147729801 147729820 AGTACCTACAAGCAGTGGTC 59 147726813 147729764 CCTTGTAGACAAATTGTGATACTCC 60 NA Rattus norvegicus 81 Atf5 ENSRNOG00000020060 ENSRNOT00000027260 2 1 1 125 1 100810415 100810435 TCGTAGACTATGGGAAACTCC 59 100809058 100810328 AATCAGAGAAGCCGTCACC 60 NA DesignNoJunction Rattus norvegicus 81 LOC100360397 ENSRNOG00000011304 ENSRNOT00000015016 2 1 1 115 1 248647924 248647942 TTCTTCCTTCACCAGCGAG 60 248648018 248649442 TTTAGTTTCATCTGGCTTCAGG 59 NA Rattus norvegicus 81 Barhl1 ENSRNOG00000013209 ENSRNOT00000017725 2 1 1 94 3 7492166 7493613 AACCGCAGGACTAAATGGA 59 7492090 7492108 GACGGGAACATTCTCTGGA 59 NA Rattus norvegicus 81 Barhl1 ENSRNOG00000013209 ENSRNOT00000017725 3 1 1 94 3 7493673 7493691 TACCTGAGTGTGCAAGACC 59 7492168 7493616 CATTTAGTCCTGCGGTTCTG 59 NA Rattus norvegicus 81 Ddx56 ENSRNOG00000004670 ENSRNOT00000089384,ENSRNOT00000006642 1 2 2 80 14 86386247 86386356 AGTCTTCTCTGTCACTTGCC 60 86386186 86386204 CTTCAGGGTTTGCACATCC 59 NA Rattus norvegicus 81 Zfp804b ENSRNOG00000031306 ENSRNOT00000045346 3 1 1 98 4 24222626 24228370 TCTGAATGTGTTTCTGGAAACG 60 24228428 24228447 TCTGCCATTCTTAACTGGGA 59 NA Rattus norvegicus 81 Ggn ENSRNOG00000023931 ENSRNOT00000056955 2 1 1 173 1 88115606 88115624 CTTAACTCCTGTCCCTGCA 59 88116454 88116472 CAAGTCGTAGTGCTCTAGG 57 NA DesignNoJunction Rattus norvegicus 81 LOC691162 ENSRNOG00000043039 ENSRNOT00000065471 2 1 1 88 5 162351304 162365283 GAGGGAAGTTCACCAAAGC 59 162365334 162365353 GTAGTCTGGTCTGTGGTCTG 60 NA Rattus norvegicus 81 Tmtc2 ENSRNOG00000004585 ENSRNOT00000006086 2 1 1 80 7 47333716 47333734 GAGAACAGCAGGTTTGCAG 60 47333125 47333673 TAAATAGGCAGAAGCCAGGG 60 NA Rattus norvegicus 81 LOC680528 ENSRNOG00000039678 ENSRNOT00000060861 1 1 1 80 11 44090884 44090902 TTCTATGCCCAAAGTGTCC 57 44090943 44091995 TATTTCAGGCCTCTGAATATCC 58 NA Rattus norvegicus 81 Imp3 ENSRNOG00000017460 ENSRNOT00000023456 3 1 1 60 8 61607036 61607056 CGGAAGCTTAAGTTCCATGAG 59 61607076 61607096 CTTCCCAGTTTAGGAAGTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stmnd1 ENSRNOG00000031595 ENSRNOT00000051732 2 1 1 80 17 18828892 18828910 AGCAAACAGAGGACCAGAG 59 18817169 18828848 CTCTGACATCAGCCTTGGA 59 NA Rattus norvegicus 81 Ndufs4 ENSRNOG00000011383 ENSRNOT00000015217 2 1 1 80 2 46397248 46438817 GAGAAACTGGATGTTACTCCTC 58 46397189 46397209 AGCAGGAACAAAGATTCTGAC 59 NA Rattus norvegicus 81 Prss21 ENSRNOG00000047969 ENSRNOT00000073065 2 1 1 81 10 13216173 13216192 CTCCACATACAAGTTTGCGA 59 13216236 13219135 AAGTGGCAGACTCTCATCC 59 NA Rattus norvegicus 81 Olr1172 ENSRNOG00000052784 ENSRNOT00000086296 1 1 1 60 8 20442434 20442455 TACTGGGTGTGATTCCTATGAC 59 20442395 20442415 AAGGATGAGACAATCTGTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1172 ENSRNOG00000052784 ENSRNOT00000086296 3 1 1 60 8 20442397 20442417 TACTCACAGATTGTCTCATCC 57 20442357 20442375 AGGCTTTGTACTTCCTCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1128 ENSRNOG00000029054 ENSRNOT00000044686 1 1 1 60 8 18927026 18927046 ACTTATATTTGGTGGCATCCC 58 18927065 18927086 AGAGGCAATTTGGACATAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acot9 ENSRNOG00000003782 ENSRNOT00000005033 2 1 1 80 X 43545823 43549964 CACAAGGAGAATTGAACAAGAG 58 43545764 43545783 TCTCCTCAGAATTAGGAGCT 57 NA Rattus norvegicus 81 Hes6 ENSRNOG00000020194 ENSRNOT00000066346,ENSRNOT00000086678 3 2 2 183 9 98551104 98551122 AGAGTCTTCAGGAGTTGCG 59 98550621 98550639 ATGCATTGGATGTAGCCAG 58 NA DesignNoJunction Rattus norvegicus 81 Cmah ENSRNOG00000003094 ENSRNOT00000018699,ENSRNOT00000081105 1 2 2 80 17 42590201 42594010 TTATGAAGAAATCCGCAGCC 59 42590140 42590160 CCAATATACAGGTCATCCCAC 58 NA Rattus norvegicus 81 Nfkbid ENSRNOG00000025111 ENSRNOT00000029719 1 1 1 80 1 88888019 88888127 AGACTTCGAAGGCCTTACC 59 88888170 88888189 CTCGGACACATAGTAGGTGG 59 NA Rattus norvegicus 81 Tshz2 ENSRNOG00000048433 ENSRNOT00000073788 1 1 1 60 3 166744919 166744937 TCAACGAGGATGAGCAAGG 60 166744960 166744979 AGAGGTTTCTGTAAAGCGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910942 ENSRNOG00000013073 ENSRNOT00000017489 2 1 1 61 18 35249147 35249165 CAGGTGTCTTTCTGCTCCT 59 35249190 35251840 TTGACTGAAGGCACCTGAG 60 NA DesignRelaxed Rattus norvegicus 81 Ssb ENSRNOG00000007998 ENSRNOT00000011174 2 1 1 81 3 56099714 56100256 CCAGGAAGTACTGAAACAAGAG 59 56100298 56100316 AGGTCTGGTCATCCAAGTC 59 NA Rattus norvegicus 81 Vom1r35 ENSRNOG00000033755 ENSRNOT00000049179 3 1 1 60 1 72128915 72128936 TATCAGTTTGTCACTCTTGCTC 59 72128876 72128898 TGTCTCTTCTACTGAGTATCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cysltr2 ENSRNOG00000015042 ENSRNOT00000020186 3 1 1 60 15 54905800 54905819 CAGATGCTCCATATCACCAG 58 54905759 54905780 AGACCCATATAATCCCACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07018556.1 ENSRNOG00000049650 ENSRNOT00000045865 1 1 1 60 15 64939981 64940002 CTTCACCAACAGAATACAAGAG 57 64940020 64940041 TTCTATGGAATCTTCTGCTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufs5 ENSRNOG00000026646 ENSRNOT00000036389 2 1 1 98 5 141393947 141405369 CCAAGAAGTCATGCCTTTCC 59 141393868 141393887 GCATTCTTGTAAGGCTGCTC 60 NA InUTR Rattus norvegicus 81 Urm1 ENSRNOG00000026636 ENSRNOT00000037494 1 1 1 80 3 8393752 8402570 GAGGAACCCTGGGATATCC 59 8402614 8402632 CTGGATGAATAGCTCTGGC 58 NA Rattus norvegicus 81 RGD1562492 ENSRNOG00000037219 ENSRNOT00000051280 2 1 1 80 1 101271094 101271115 GCACCATCATAACTTTCTCCTC 59 101271257 101274681 GCAGATTGGAGACATTGCTC 59 NA Rattus norvegicus 81 Kctd11 ENSRNOG00000015669 ENSRNOT00000020970 1 1 1 60 10 56490865 56490885 CATTACTTCATCGACAGGGAC 59 56490825 56490843 CTAGCCGCAGGAAATTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 S1pr4 ENSRNOG00000005370 ENSRNOT00000007117 3 1 1 60 7 11078406 11078425 TCTACTCCAAGGGCTATGTG 59 11078446 11078466 ATAGTCACTAGGATTAGGGCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1744 ENSRNOG00000029420 ENSRNOT00000044570 3 1 1 60 20 1862068 1862087 CCTAAGGCCAGCTATGATCC 60 1862108 1862128 TGATCACAGCATAGAAGAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hic1 ENSRNOG00000046405 ENSRNOT00000004143 1 1 1 63 10 62008890 62008908 CTTGGCTTATGGTGAGCCT 60 62008845 62008863 TTTGCCACATGGAATGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hic1 ENSRNOG00000046405 ENSRNOT00000004143 3 1 1 65 10 62008892 62008910 CACTTGGCTTATGGTGAGC 59 62008845 62008863 TTTGCCACATGGAATGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dus3l ENSRNOG00000050381 ENSRNOT00000072703 2 1 1 80 9 10289748 10289859 TTCTTTGCAGGTATGTGCC 59 10289686 10289704 GGCCTAAGTAGTAGGGTGG 59 NA Rattus norvegicus 81 Evi2b ENSRNOG00000014125 ENSRNOT00000018898 3 1 1 60 10 66858554 66858575 CATGTTGCTTTGTCAATACCTG 59 66858515 66858533 TGCTGTAGTTGCTTCTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC690806 ENSRNOG00000043288 ENSRNOT00000067898 1 1 1 60 17 21339197 21339215 ATTCAAGTTTCTGCGGGAG 58 21339155 21339175 CTGCTCATTATCTCCTTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910719 ENSRNOG00000053256 ENSRNOT00000045736 2 1 1 60 15 35586370 35586388 GAAACCATTGCACAGTGAC 58 35586412 35586430 TGGAGTTCTGGCTTCTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Efemp2 ENSRNOG00000020587 ENSRNOT00000080520,ENSRNOT00000052315,ENSRNOT00000078619 2 3 3 80 1 220857895 220857913 CTCCTATGGGACCTTCCTG 59 220857955 220859649 TCATCGATATCACTGCAGGAG 60 NA Rattus norvegicus 81 Rab12 ENSRNOG00000019295 ENSRNOT00000026177 1 1 1 80 9 114685854 114685876 GATGAGATCTTTCTGCTCGTG 59 114684117 114684137 GATGCTATTGGATAACTCGCT 58 NA Rattus norvegicus 81 Cdkn2b ENSRNOG00000006735 ENSRNOT00000008898 1 1 2 112 5 107853559 107853577 CTAATGGTGCTGCACAAGG 59 107853388 107853486 TAGATAGGGCTCGCAATATCAC 60 NA Rattus norvegicus 81 Med27 ENSRNOG00000013933 ENSRNOT00000019157 2 1 1 80 3 8032903 8032921 AAAGCGTCTACACAGAGGA 58 8041857 8056733 CATGGTCTGTCACCTTCTG 58 NA Rattus norvegicus 81 Aebp2 ENSRNOG00000008929 ENSRNOT00000035507 3 1 1 80 4 174828996 174831363 CATCTACAGAACAATGCCACAG 60 174862223 174862241 GTGAACTCACCAGCAAAGC 60 NA Rattus norvegicus 81 R3hdm1 ENSRNOG00000004099 ENSRNOT00000005372 1 1 1 80 13 44893747 44896093 GATATTCTCCCAAGACTCCCT 59 44896215 44896236 GTACCAATAGTGTCCTCATCTG 58 NA Rattus norvegicus 81 Wdr88 ENSRNOG00000037393 ENSRNOT00000056583 1 1 1 80 1 91502731 91507362 CTGTTTACCATACAGGAGGCA 60 91502671 91502690 GCTGGTACACAAGAAGTGTC 59 NA Rattus norvegicus 81 Rictor ENSRNOG00000011341 ENSRNOT00000029565 2 1 1 80 2 56075132 56076894 GCTCTTACATATGGCAAACAC 58 56076935 56076954 GCCATATTCATAAGGGTCGG 58 NA Rattus norvegicus 81 Phactr1 ENSRNOG00000014264 ENSRNOT00000046523 1 1 1 80 17 23661584 23684388 TATGGATGGACCAGATCCTG 58 23684431 23684449 TTCTTTGGAGGTAGCGGAG 59 NA Rattus norvegicus 81 Socs1 ENSRNOG00000002568 ENSRNOT00000003458 3 1 1 225 10 4957792 4957810 CATTCGTGTGCACTTCCAG 60 4957999 4958017 GAGTACCGGGTTAAGAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asrgl1 ENSRNOG00000020202 ENSRNOT00000027459 3 1 1 83 1 225313900 225313918 ACTTGGCTTATGCAACCTC 58 225311053 225313854 CTCCAGCTCCTATACAAGGT 58 NA Rattus norvegicus 81 AABR07006775.1 ENSRNOG00000047214 ENSRNOT00000072116 3 1 1 111 1 257747284 257749465 GGATCTTCACACTGTACAGC 58 257749539 257749557 AGGATTCCTAGTCCAGTCC 58 NA DesignNoJunction Rattus norvegicus 81 Dync1li2 ENSRNOG00000025791 ENSRNOT00000076337 1 1 4 80 19 755466 755919 TCCTGTGAGAAAGCTGGTC 59 755959 755981 CCTCTTACCTGTTGTTTCATCAG 60 NA Rattus norvegicus 81 Olr766 ENSRNOG00000050138 ENSRNOT00000043664 3 1 1 60 3 102741571 102741590 ACCACACCTAAGATGATCAC 57 102741530 102741549 AGCCTGCAAAGGAAATAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adra1a ENSRNOG00000009522 ENSRNOT00000012736 3 1 1 91 15 43300268 43391905 TAGTGATGCCCATTGGGTC 60 43391957 43391978 GCAACTATTTAGATACCCGAGC 59 NA Rattus norvegicus 81 Prl3a1 ENSRNOG00000017103 ENSRNOT00000023063,ENSRNOT00000077923 1 2 2 80 17 42724710 42724731 GTTCAAAGTCAAAGAGGTGGAG 60 42723990 42724672 CCAGGATAAACCCTAACAAGGA 60 NA Rattus norvegicus 81 rno-mir-344b-2 ENSRNOG00000049216 ENSRNOT00000071160 1 1 1 60 1 121201293 121201312 GGCTGCTGGTTATATTCCAG 59 121201252 121201270 TTAACAGTCGGGCTTTGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100365622 ENSRNOG00000050411 ENSRNOT00000047138 1 1 1 60 3 102580141 102580160 CTCATCAAAGGCACTATCCA 57 102580182 102580201 CCCAAAGAATAGCACAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srxn1 ENSRNOG00000031167 ENSRNOT00000041456 1 1 1 80 3 147620536 147620554 TCTGTTCAGTCAGAGCCTG 59 147621141 147631323 AGAAGTGGTCTTCAGGTTACAG 60 NA Rattus norvegicus 81 LOC688176 ENSRNOG00000017329 ENSRNOT00000023259 3 1 1 84 14 82353911 82353929 CTCAAACCTACCTGTGCAG 58 82353973 82354407 GGAGTTCAGCCTAATATCAAAGG 59 NA Rattus norvegicus 81 Smek3 ENSRNOG00000032858 ENSRNOT00000040923 2 1 1 71 X 57867537 57867555 CCATCCATGTTTCAAGCAC 57 57867987 57868007 AGGTCTGAACATACTCAACTG 58 NA DesignNoJunction Rattus norvegicus 81 Kdm1b ENSRNOG00000016519 ENSRNOT00000022244 1 1 1 80 17 17997206 17997225 CTAACTCCAGGCTACTCCAC 59 17996433 17997163 TATGCTCTGCACTGGAGAC 59 NA Rattus norvegicus 81 Prl3b1 ENSRNOG00000017185 ENSRNOT00000023086 2 1 1 80 17 42771848 42773488 ATACTCAGCAGGGTTCAACC 60 42771787 42771808 ATCAGATGACTGCAAATCTGAC 59 NA Rattus norvegicus 81 Cst5 ENSRNOG00000005545 ENSRNOT00000007336 1 1 1 111 3 144569964 144569985 CAGAAAGTGATCAACTTTGCTG 59 144570057 144572688 TCTTCCCAGACACAACCTG 59 NA Rattus norvegicus 81 Uncx ENSRNOG00000001284 ENSRNOT00000001730 2 1 1 91 12 17185604 17185623 TTCAATGAGAGCCACTACCC 60 17183574 17185550 TGGAACCAGACCTGAACTC 59 NA Rattus norvegicus 81 Ncoa1 ENSRNOG00000004068 ENSRNOT00000091659,ENSRNOT00000068531 1 2 2 80 6 28710878 28710896 AAAGATGAGACGGAGCTGG 60 28710613 28710839 TAATACATCTAATCCACCTCCCTG 59 NA Rattus norvegicus 81 Tacr3 ENSRNOG00000009372 ENSRNOT00000012473 2 1 1 80 2 240021818 240021838 CCAGAACTTCTTTCCCATCAC 59 240021877 240052590 ATAGCCATATACCTGTCCACTG 59 NA Rattus norvegicus 81 Rin1 ENSRNOG00000050223 ENSRNOT00000072261 3 1 1 82 1 220336238 220336256 ATCTCTTTGGAGGGCTCAG 59 220336299 220336430 AGAAGAATGTCCCTGGTATGAC 60 NA Rattus norvegicus 81 LOC690114 ENSRNOG00000027370 ENSRNOT00000028923 2 1 1 75 1 94759448 94760668 CAGACACCAGTCTTCTGGT 59 94759391 94759409 AACAGACAGAGTGTCTGGC 60 NA DesignNoJunction Rattus norvegicus 81 LOC690114 ENSRNOG00000027370 ENSRNOT00000028923 3 1 1 75 1 94759447 94760667 AGACACCAGTCTTCTGGTG 59 94759390 94759408 CAACAGACAGAGTGTCTGG 58 NA DesignNoJunction Rattus norvegicus 81 Tmod4 ENSRNOG00000021088 ENSRNOT00000088312,ENSRNOT00000028630 2 2 2 80 2 196299005 196299194 AGTAGATAACCAGCGCCAG 59 196299237 196299256 ACAATAGACGGACACTGCTC 60 NA Rattus norvegicus 81 Tmem198b ENSRNOG00000006827 ENSRNOT00000008929 1 1 1 91 7 3226066 3226211 CAGCTCCAAGTTATCAGCAG 59 3225994 3226012 AGAATCAAGGTCCAGGACG 59 NA Rattus norvegicus 81 Olr1253 ENSRNOG00000046873 ENSRNOT00000044859 1 1 1 60 8 42377047 42377065 AACTTGGCCTTTGTAGACC 58 42377005 42377025 AGTTCATCAACATTTGCGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trappc6a ENSRNOG00000017468 ENSRNOT00000023652 3 1 1 136 1 80423393 80423412 CCACAGTACCTAGAGGAAGC 59 80423626 80424176 ACCACCTGGAACTTACAGG 59 NA Rattus norvegicus 81 Aoah ENSRNOG00000054964 ENSRNOT00000087838 2 1 1 80 17 45882256 45890130 CCTTCCATGAAATAATAGAGGACTG 59 45882200 45882219 GATGGAATCCGTCTACAGGT 59 NA Rattus norvegicus 81 Pkia ENSRNOG00000012095 ENSRNOT00000016567 3 1 1 90 2 96600312 96600330 TTGGTTTCCTCTGCAAGTG 58 96596514 96600260 GTCCATCATCTTCACCTTCTG 59 NA Rattus norvegicus 81 Grid2ip ENSRNOG00000030927 ENSRNOT00000044378 2 1 1 80 12 13225397 13225419 GTAACTATCTCAACGATGGACAG 59 13224600 13225358 TGGAGTTTAGCTCTGTCAGG 59 NA Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000077623,ENSRNOT00000081496,ENSRNOT00000021278 1 3 6 60 1 262013560 262013579 TCTTCTACTGGACGGATGAG 58 262013519 262013538 TCTGACTGCCTGAACTTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfx ENSRNOG00000005624 ENSRNOT00000065194 1 1 2 80 X 63165758 63165959 TGGAGAAGATGACTTAGGTGG 59 63165698 63165716 GGATCAAGCAGTTCAACCC 59 NA Rattus norvegicus 81 Rnf216 ENSRNOG00000001101 ENSRNOT00000001458,ENSRNOT00000083976 2 2 2 80 12 13544382 13544400 TGATGCTCACTTGTTCTGC 59 13544444 13549197 CTGAGCTCTGACTTTCCAG 58 NA Rattus norvegicus 81 Pdzrn3 ENSRNOG00000057556 ENSRNOT00000090506 2 1 1 80 4 133720701 133720719 CACATGGATATGCTCGAGG 58 133719887 133720657 TTCCTCATGCTTCTTCTGC 58 NA Rattus norvegicus 81 Stx12 ENSRNOG00000011804 ENSRNOT00000085573,ENSRNOT00000017227,ENSRNOT00000078048 3 3 3 80 5 151051031 151052225 ATTTGACAGCCATGAGGAG 58 151050969 151050988 ATAAGTTCCAGGTCTTGCTC 57 NA Rattus norvegicus 81 Oprk1 ENSRNOG00000007647 ENSRNOT00000010254 2 1 1 80 5 13746515 13749897 TCAGGGAAGATGTGGATGTC 59 13746454 13746473 TCTTCATGAAGAGGTCCCAC 59 NA Rattus norvegicus 81 Abca15 ENSRNOG00000027505 ENSRNOT00000037026 3 1 1 80 1 190110072 190112887 AAACACCTACACAAGGTATTCC 58 190112925 190112946 TCCCTCATATACGTTCAAAGAC 58 NA Rattus norvegicus 81 Fgf5 ENSRNOG00000022631 ENSRNOT00000035446,ENSRNOT00000077861 3 2 2 147 14 12995408 12995426 TTCGTCTTCTGCCTCTTCC 59 12995279 12995299 GTAGATCTGCAGATGGAAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufb9 ENSRNOG00000009364 ENSRNOT00000012616 1 1 1 85 7 98813173 98815613 GTCCACAGGGACAAATACC 58 98815661 98815680 GCCTTCATCATGTCCTTCTC 59 NA Rattus norvegicus 81 Hivep3 ENSRNOG00000009341 ENSRNOT00000066774,ENSRNOT00000078155 1 2 2 80 5 139067753 139067771 CATGAAGTCGAAAGCCCAC 59 139067815 139071097 TCACTGGTTCCTTCTTCGG 59 NA Rattus norvegicus 81 Abcc9 ENSRNOG00000036960 ENSRNOT00000067489,ENSRNOT00000055540 1 2 2 80 4 176841434 176842561 TCATCGACCAACATATCCCT 58 176841373 176841391 AGATCATCCCAATAGCCGA 58 NA Rattus norvegicus 81 Tmeff2 ENSRNOG00000016623 ENSRNOT00000066231,ENSRNOT00000081677 2 2 2 80 9 55386007 55389466 GTATCACAAGGAAATGTCCCA 58 55385947 55385968 TTGTGTTGTCTGAACTGTAGTG 59 NA Rattus norvegicus 81 Nkd2 ENSRNOG00000016103 ENSRNOT00000021898 1 1 1 80 1 32077745 32078283 CACTTGAACATCGACGCAC 60 32078327 32078345 GTCATACAGCGTGAACGTC 59 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027372 1 1 10 60 18 30001623 30001643 TCCAGTATCAGAGGTCATTGG 59 30001665 30185398 GGGTTGAAAGCCATGATGG 59 NA DesignNoJunction Rattus norvegicus 81 S100a6 ENSRNOG00000011647 ENSRNOT00000015612 2 1 1 81 2 190007983 190008292 CACCATTGGTGCTAAGCTG 59 190008332 190008355 GTTTACTTCCTGATCCTTGTTACG 60 NA Rattus norvegicus 81 Rn60_20_0013.1 ENSRNOG00000061444 ENSRNOT00000043674 1 1 1 60 20 1299771 1299789 CTTTGCTTCATCACCACCA 58 1299813 1299831 ATCCATCTCCAGTCCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajc13 ENSRNOG00000011491 ENSRNOT00000015344 3 1 1 80 8 112752160 112752180 TTAACATCGATAGGGAGCTGG 60 112747392 112752121 CCAGGCACTCATATTTAACCTC 59 NA Rattus norvegicus 81 Afap1 ENSRNOG00000060665 ENSRNOT00000090597,ENSRNOT00000089006 2 2 2 80 14 79946850 79946868 GGCTTGGATTCTAAGCACC 59 79945160 79946808 AGAAGATGATGCCTCTAGGAC 59 NA Rattus norvegicus 81 Hecw2 ENSRNOG00000013257 ENSRNOT00000017761 3 1 1 80 9 60498833 60498853 TCAGATTATGGGCTACTCCAG 59 60488034 60498791 TAATCCAACCCTTCCTCCC 58 NA Rattus norvegicus 81 Gcat ENSRNOG00000055408 ENSRNOT00000078383 2 1 1 82 7 120267331 120267349 CTGCTCAATATGGTGCCCT 60 120267395 120267504 CTCATCTGTGCCTCTTCCA 59 NA Rattus norvegicus 81 Fam117b ENSRNOG00000022066 ENSRNOT00000031261 3 1 1 82 9 66755547 66758475 CAGAACAGCTTAAAGAGATTGC 58 66758516 66758536 TTCTTTATCTCGATGGTGACG 58 NA Rattus norvegicus 81 Cln3 ENSRNOG00000019103 ENSRNOT00000025898 1 1 1 80 1 197997186 197997362 AGGATTCTGAGAGGGAGGAG 60 197997125 197997143 CCGCATTCTTCCAAAGGAC 59 NA Rattus norvegicus 81 Zfp18 ENSRNOG00000003981 ENSRNOT00000005518 1 1 1 80 10 52336322 52341957 ACTACAGGAGGAACAGTGG 58 52342001 52342019 TTCCCATAGGTTTCCAGCA 59 NA Rattus norvegicus 81 Ccdc169 ENSRNOG00000038095 ENSRNOT00000019018,ENSRNOT00000082923 2 2 2 83 2 144560375 144560393 AACTGAACGACCAGTTGGA 59 144560438 144560537 ACAGTCTATCTGAAGGGTTCC 59 NA Rattus norvegicus 81 Ssr1 ENSRNOG00000014165 ENSRNOT00000084090,ENSRNOT00000077994,ENSRNOT00000019040,ENSRNOT00000089736 1 4 4 80 17 27498399 27498422 GAAGATCCAATAATCGAGGATGAG 59 27498459 27500588 TTCTTTCTCTTCTGCCAAGTC 58 NA Rattus norvegicus 81 Ubr3 ENSRNOG00000008616 ENSRNOT00000011380 1 1 1 80 3 56212481 56212501 CTCTGCATGGTGTTGTATCTG 59 56212541 56213461 ACCCATTGATACCTCTTCCTC 59 NA Rattus norvegicus 81 Gabrr3 ENSRNOG00000001679 ENSRNOT00000002281 3 1 1 80 11 43072964 43072983 CAGCCATGTGCTTTATGGAC 60 43071889 43072924 TATAGGCATAGCTTTCCAGCTC 60 NA Rattus norvegicus 81 AABR07030494.1 ENSRNOG00000049929 ENSRNOT00000074987 1 1 1 60 10 90569383 90569401 GTTATGGCTGGGATCATCG 58 90569341 90569361 GGGAGTTATCGCTAAGTACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab8a ENSRNOG00000014621 ENSRNOT00000020748,ENSRNOT00000077789 1 2 2 119 16 19361805 19363123 ATTGAGGAGCATGCCTCTG 60 19361323 19361341 GATCCCATAGTCGAGTGCC 60 NA Rattus norvegicus 81 Snx24 ENSRNOG00000017488 ENSRNOT00000023507 2 1 1 80 18 48300205 48346221 GAAACCTATTTACAGGCCGTC 59 48346258 48346281 CAAGTGTCTTACATTGAGGAAGTC 60 NA Rattus norvegicus 81 Mta1 ENSRNOG00000004711 ENSRNOT00000006521,ENSRNOT00000046456 3 2 2 80 6 137924569 137924593 CAGACTATGTCTACTTTGAGAACTC 59 137924630 137929178 CGTTGGCTGTCTTATTGAGC 60 NA Rattus norvegicus 81 Hmbs ENSRNOG00000010390 ENSRNOT00000014127,ENSRNOT00000079275 2 2 2 80 8 48667905 48667924 GGAGTCTGGAGTCTAGATGG 58 48667765 48667862 ATCTTCTTGCTGAACAGGG 57 NA Rattus norvegicus 81 Tipin ENSRNOG00000043068 ENSRNOT00000066973 2 1 1 82 8 69753495 69754154 TGATGAAGGATCAGGGAGTG 59 69754194 69754217 TAGCATCTAGCTTGGGTATATTCC 60 NA Rattus norvegicus 81 Afap1l2 ENSRNOG00000017164 ENSRNOT00000023113 2 1 1 80 1 277755239 277761263 CTCCACCCAAGATGATTCCA 60 277755178 277755197 CAGCCTCTTCATAGTAGCCC 60 NA Rattus norvegicus 81 Frmd4b ENSRNOG00000007764 ENSRNOT00000010717 3 1 1 80 4 129672585 129674520 CACCTATGATGATCCCAATGAC 59 129672526 129672548 GGTAGAATTCTTGGAGAATGAGG 59 NA Rattus norvegicus 81 Ppm1l ENSRNOG00000046168 ENSRNOT00000074564 2 1 1 80 2 166140226 166140245 CAGCAGATCTTGTCAATCGA 58 166140287 166206874 GATCAAACACGTTGTTCCTG 58 NA Rattus norvegicus 81 Thoc1 ENSRNOG00000032739 ENSRNOT00000045976 3 1 1 61 X 48196972 48210294 GATGGGAGTAGAAGAAATCATACC 59 48210312 48210332 TTGTCTGTTGAAGGACATCTG 58 NA DesignNoJunction Rattus norvegicus 81 Olr1307 ENSRNOG00000048037 ENSRNOT00000060092 1 1 1 60 8 43304204 43304224 TACACAGTGATGGCTTATGAC 58 43304164 43304183 TTATTGAGTAGCGAAGTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bcr ENSRNOG00000001304 ENSRNOT00000001766 2 1 1 80 20 14426177 14426195 AGGAAGTAGGCATCTACCG 58 14423755 14426136 CCTTGTTATTGACATCAAAGGC 58 NA Rattus norvegicus 81 Wee2 ENSRNOG00000026446 ENSRNOT00000036398 3 1 1 80 4 68621128 68625125 ATACTGTAATGGTGGGAGCC 59 68625168 68625186 TTGAGTTTGGGCTCTTGGA 59 NA Rattus norvegicus 81 RGD1560207 ENSRNOG00000030048 ENSRNOT00000045901 3 1 1 80 X 46844499 46844517 CCTGCTGAATTTGGATGGA 58 46836824 46844455 ATCAACAATGCCTTTGGCT 58 NA Rattus norvegicus 81 Ensa ENSRNOG00000048617 ENSRNOT00000075511,ENSRNOT00000079196 3 2 2 81 2 197752733 197754358 AGAAGCAGGATACACAGGAG 59 197754402 197754420 AGGCTTGGATATTTGGCCT 59 NA Rattus norvegicus 81 Hspd1 ENSRNOG00000014525 ENSRNOT00000066589 3 1 1 80 9 61689946 61689965 GAGCCTTAATGCTTCAAGGT 58 61688133 61689906 TAATCACTGTTCTTCCCTTTGG 58 NA Rattus norvegicus 81 Cd93 ENSRNOG00000024799 ENSRNOT00000076493,ENSRNOT00000034256 3 2 2 60 3 142781732 142781752 AGCTATTCCTGGATTCCAGAG 59 142781444 142781712 TTGGGCTGTACTGATTCTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Nudt15 ENSRNOG00000025239 ENSRNOT00000077733,ENSRNOT00000038436 3 2 2 94 15 55421916 55423682 GAATTTGGTGAGACCTGGG 58 55421840 55421858 TTTACCACCGAAGCAAAGC 59 NA Rattus norvegicus 81 Spg20 ENSRNOG00000014155 ENSRNOT00000057978 1 1 1 80 2 144536239 144538599 ACAACATTCTGTCAGGTGC 58 144538642 144538661 CTTTCTGAATTGCTTTGCCA 58 NA Rattus norvegicus 81 Rhebl1 ENSRNOG00000054385 ENSRNOT00000089523 1 1 1 80 7 140555043 140555061 GCAAGACAGTGACTCTTGG 59 140554706 140555002 GCAGAATGCTGTACTTATCCTG 59 NA Rattus norvegicus 81 Chst1 ENSRNOG00000007989 ENSRNOT00000010510 1 1 1 116 3 81509499 81510706 AGCTGAGTTCCAGAAGACC 59 81510786 81510804 TACTGGATGGCAATGGAGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cenpo ENSRNOG00000050111 ENSRNOT00000070979 3 1 1 80 6 28660631 28660650 CAAGATTCGAGAACTGCAGC 60 28652959 28660592 GAAGATTCTTTAACTCTGGCTCG 60 NA Rattus norvegicus 81 AABR07038477.1 ENSRNOG00000038369 ENSRNOT00000058420 1 1 1 80 X 50599081 50599100 GAAGAGATCCAGGAAGATGC 58 50599141 50601824 CCATAAGAACAATTGCAAGCC 59 NA Rattus norvegicus 81 Enox1 ENSRNOG00000047817 ENSRNOT00000074868 1 1 1 80 15 59759463 59776753 GATCCTCACTCAATTTGAGCAG 60 59776794 59776812 GCTTTCGAGAAATGGTCCC 59 NA Rattus norvegicus 81 Rab10 ENSRNOG00000047088 ENSRNOT00000071425 3 1 1 81 6 27678165 27678184 TGTATGACATCACCAACGGT 60 27674443 27678122 ACATCTTCATTGGCATGCTC 59 NA Rattus norvegicus 81 S100a9 ENSRNOG00000011483 ENSRNOT00000015351 3 1 1 99 2 190099757 190100114 TTAGCTTTGAGCAAGAAGATGG 59 190099679 190099702 CATACTTCCTAGAGTACTGATGGA 59 NA Rattus norvegicus 81 Pus10 ENSRNOG00000054151 ENSRNOT00000083707,ENSRNOT00000083763 1 2 2 80 14 108443508 108443527 CTGAAGGAAGCCTACAAGTG 58 108443569 108446264 GAACAAGCTCTTCCCATCAG 59 NA Rattus norvegicus 81 Rn60_20_0024.1 ENSRNOG00000026374 ENSRNOT00000030972 1 1 1 60 20 2331871 2331889 GAACCTTCCGCAAGTTCAC 60 2331913 2331931 TAGGACATGTCCATCAGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911822 ENSRNOG00000020799 ENSRNOT00000028222 3 1 1 86 1 88687238 88687336 TGCCAGGAATGTAATAACATGC 60 88687597 88687615 CTGGTAATCGCAATTCCGG 59 NA Rattus norvegicus 81 Rab13 ENSRNOG00000016733 ENSRNOT00000092112,ENSRNOT00000022627 3 2 2 94 2 189583037 189583058 AGAGAATCAAACTGCAAGTCTG 59 189584344 189584579 TAGGATAATGCCCATGGCTC 60 NA Rattus norvegicus 81 Fchsd2 ENSRNOG00000019319 ENSRNOT00000091822,ENSRNOT00000042524 3 2 2 80 1 166231701 166231722 GAAGTTGGCTAGTCAATACCTG 59 166231757 166247858 GGATACATACTCCTGTAATCATTCC 59 NA Rattus norvegicus 81 Lpin1 ENSRNOG00000004377 ENSRNOT00000005863,ENSRNOT00000084155 2 2 2 80 6 41809958 41809977 CCATCTACCTGTGGAATTGG 58 41809247 41809919 GACCAAGAGTATCAGATCTTGTG 59 NA Rattus norvegicus 81 Ucp3 ENSRNOG00000017716 ENSRNOT00000024005 1 1 1 80 1 165491236 165491256 TTGTCAATTGTGCTGAGATGG 59 165491297 165491684 GGAAGTTGTCAGTGAACAGG 59 NA Rattus norvegicus 81 Olr1121 ENSRNOG00000006428 ENSRNOT00000008415 2 1 1 60 8 18719918 18719939 GGTGTATTCCTGTTTCATCTCC 59 18719879 18719897 ACAGAATACCAGACGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxw17 ENSRNOG00000030027 ENSRNOT00000044073 3 1 1 81 17 15085053 15085073 TTGAGTTCCGTGTGAAATCTG 59 15084703 15085012 AGCTGATCTATCGTTCCTGTG 60 NA Rattus norvegicus 81 Draxin ENSRNOG00000008911 ENSRNOT00000012080 2 1 1 75 5 164921123 164921141 TAACGAGACATCACCTGCT 58 164919115 164921084 GAGGTCACAGCAAGTTCCT 60 NA DesignNoJunction Rattus norvegicus 81 Slc35b1 ENSRNOG00000004510 ENSRNOT00000006179 3 1 1 80 10 83205811 83205831 TACCAAACAGGTTCCAATCAC 59 83205873 83207047 AGTAAACAGGATCCCAGCA 58 NA Rattus norvegicus 81 Rnf39 ENSRNOG00000000781 ENSRNOT00000084548 2 1 3 219 20 2099783 2099802 ACCTCTTCTCCACTCTTCTC 58 2099405 2099423 CCATATAGCCTCGGATGGG 59 NA DesignNoJunction Rattus norvegicus 81 Uroc1 ENSRNOG00000043404 ENSRNOT00000038251 3 1 1 80 4 122266559 122269039 GAAGATCAAGGCACCAGTG 59 122269082 122269101 TTCGAAGTCTCCCTAAAGGG 59 NA Rattus norvegicus 81 Fbxl4 ENSRNOG00000005641 ENSRNOT00000061128,ENSRNOT00000077650 1 2 2 80 5 36586200 36596524 GATTTAGCAGGTTTCTGAAGGT 59 36596563 36596583 AAGCGTCATTAAGAAAGTGGC 60 NA Rattus norvegicus 81 Tp53i11 ENSRNOG00000008738 ENSRNOT00000057001 3 1 1 98 3 82092219 82092237 CAGACAGATCTTGTGAGCC 58 82092299 82092812 AACCTGGCTGATCTTTGAC 58 NA Rattus norvegicus 81 Tab3 ENSRNOG00000003643 ENSRNOT00000004854 3 1 1 82 X 54083858 54083879 CGAAGAATTAGTGTGACTTCCA 59 54083919 54086209 CAGCCACTTAAATGTTCTTCTG 58 NA Rattus norvegicus 81 Spop ENSRNOG00000004686 ENSRNOT00000077625,ENSRNOT00000006230 1 2 2 80 10 83290704 83293634 AGCTGAAATGGTGTTTGCG 60 83293678 83293696 CCAACAACAGGTAGAGCGA 60 NA Rattus norvegicus 81 LOC100360638 ENSRNOG00000018936 ENSRNOT00000051665,ENSRNOT00000037975 1 2 2 74 1 84893943 84894773 TGGTTCAGTGACATTTAGGG 58 84893888 84893906 TTCTGAGTAGCATCCAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Mtmr12 ENSRNOG00000022929 ENSRNOT00000036633 3 1 1 80 2 62299432 62300324 ATACTAACATGGGCAGGGAG 59 62300366 62300385 ACTGTACTGACCAATCCCAC 60 NA Rattus norvegicus 81 LOC100910744 ENSRNOG00000049356 ENSRNOT00000073212 2 1 1 60 8 41898711 41898732 CTCTTCTTGGGAATCTATGTGG 58 41898752 41898771 CAATCAGAACAATCAAGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000076915,ENSRNOT00000018185 1 2 5 81 7 120771635 120771739 GATCAAATCAGGCCTGACC 58 120771572 120771590 GGAAATCCTCTGCAAGCTG 59 NA Rattus norvegicus 81 Trim80 ENSRNOG00000028812 ENSRNOT00000065292 1 1 1 80 10 103997577 103997790 GTGAGTTTCCTCTCGAAACTG 59 103997828 103997850 TTTAACCTCATGGAGGATCTCTG 60 NA Rattus norvegicus 81 Wdfy2 ENSRNOG00000010042 ENSRNOT00000066864,ENSRNOT00000080537 1 2 2 80 15 46116200 46116219 TCACTCTGTCATCATGTGGG 60 46116261 46121906 GCCTGGACTTTGTCATTGTG 60 NA Rattus norvegicus 81 Fads3 ENSRNOG00000020385 ENSRNOT00000027693 3 1 1 80 1 226104656 226104677 AATATCTTCCACAAGGATCCAG 58 226104717 226104992 CTTCTTGCCATACTCCACAG 58 NA Rattus norvegicus 81 Olr1311 ENSRNOG00000048548 ENSRNOT00000047759 1 1 1 60 8 43382397 43382417 TACAGCTCCAAAGATGTTGTC 58 43382439 43382457 TCCCTTGAAAGAGATCCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stfa2l3 ENSRNOG00000050586 ENSRNOT00000042777 3 1 1 81 11 67451720 67452326 ATTGCTGACAAGGTCAAGC 59 67452370 67452389 GAACTTTATACTGGACGGCC 59 NA Rattus norvegicus 81 Spry3 ENSRNOG00000060153 ENSRNOT00000081587 1 1 2 250 12 18936658 18936681 GGAGAAGGATTACATAACCATGTG 59 18937641 18937660 ATCTTGCCTGGATTTCTGAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Spry3 ENSRNOG00000060153 ENSRNOT00000081587 2 1 2 251 12 18936658 18936681 GGAGAAGGATTACATAACCATGTG 59 18937641 18937661 CATCTTGCCTGGATTTCTGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Etnk2 ENSRNOG00000028368 ENSRNOT00000076924,ENSRNOT00000065347 1 2 3 191 13 50498918 50498936 CTCATGGAGCATGGAGGAG 60 50497212 50498763 TCTTTGAAACGCTTGGTCC 59 NA Rattus norvegicus 81 Cep95 ENSRNOG00000014354 ENSRNOT00000066525 1 1 1 80 10 94994441 94997609 CGTCTCACAACAGAAGTGC 59 94997652 94997671 TGGCACTTTCTAGCTCTTCC 60 NA Rattus norvegicus 81 Cep95 ENSRNOG00000014354 ENSRNOT00000066525 2 1 1 80 10 94994445 94997614 TCACAACAGAAGTGCATCTG 59 94997657 94997675 TCCTTGGCACTTTCTAGCT 59 NA Rattus norvegicus 81 Fnbp4 ENSRNOG00000007241 ENSRNOT00000078278,ENSRNOT00000009687 1 2 2 80 3 79591277 79591296 CCACCAGTCCAGAATCTACC 60 79591338 79593652 CACCAATTGCAGTTTCTCCA 59 NA Rattus norvegicus 81 Notch3 ENSRNOG00000004346 ENSRNOT00000037456 1 1 1 80 7 14151981 14153170 GTGTCTTCCAGATTCTCATCAG 59 14151920 14151939 CCAGGATCAATGCAGTAGAG 58 NA Rattus norvegicus 81 Aldh7a1 ENSRNOG00000014645 ENSRNOT00000020325 3 1 1 80 18 51643524 51648163 ATCTGGGCAGATATTCCTGC 60 51643463 51643482 TAATTGGATCTTCTCCCGCA 59 NA Rattus norvegicus 81 Fam129c ENSRNOG00000039357 ENSRNOT00000034589 3 1 1 84 16 20035109 20035737 GTAACTTGGAAACGCCTGAG 59 20035784 20035802 ACATCCCTGTAGACACCCT 60 NA Rattus norvegicus 81 LOC100910252 ENSRNOG00000046635 ENSRNOT00000072493 3 1 1 81 1 221461697 221461715 CTTCAGGAAGCTCTGTACG 58 221461760 221461910 CGTACAACAAGGTAGGCAG 58 NA Rattus norvegicus 81 Zfp711 ENSRNOG00000022391 ENSRNOT00000046364 2 1 1 80 X 84089416 84089435 CCTTGAGATTCAGCTTGAGG 58 84089475 84090247 CGTCTTTCATCATATGATGCAG 58 NA Rattus norvegicus 81 Clvs1 ENSRNOG00000006919 ENSRNOT00000009744,ENSRNOT00000087182 3 2 2 80 5 22393170 22469217 TGGGATCAGAGTAGGAACTC 58 22469258 22469278 CTCAGGATCTTCGATAAGGAC 58 NA Rattus norvegicus 81 RGD1309621 ENSRNOG00000036913 ENSRNOT00000055437 3 1 1 82 4 183900631 183902129 ACCTGTGCAAGTTTCAGGA 60 183902173 183902193 TTGATTCAGGCATCTTTGTCC 59 NA Rattus norvegicus 81 Rasa2 ENSRNOG00000011909 ENSRNOT00000016327 2 1 1 80 8 104477360 104480761 GTCTTCTACTTTGAGGTAACCAG 59 104477302 104477322 CTTCTCAATGTCTTCCTCCTC 58 NA Rattus norvegicus 81 Mansc4 ENSRNOG00000036925 ENSRNOT00000055463 1 1 1 80 4 181477109 181477129 CCAGTTCCTCAAGTACTACTC 57 181472358 181477068 TTACAGGAAACATCCTTCCG 58 NA Rattus norvegicus 81 Pgc ENSRNOG00000014492 ENSRNOT00000019650 3 1 1 80 9 15268178 15268673 ATTACCATTGACGACTTCCTC 58 15268118 15268136 TGTGTCTACAATGCCTTGG 58 NA Rattus norvegicus 81 Adamts19 ENSRNOG00000019577 ENSRNOT00000026543 1 1 1 80 18 54000091 54009854 ATGAAATGGGTCACAACATGG 59 54009893 54009914 CACCAGACATGATATGAAGACC 59 NA Rattus norvegicus 81 Utp20 ENSRNOG00000005823 ENSRNOT00000008317 1 1 1 80 7 29362967 29363095 TTACCTCATCTCAGGCCAC 59 29362905 29362923 AACAGCCAGGAAGAGTGAC 60 NA Rattus norvegicus 81 Sun3 ENSRNOG00000005105 ENSRNOT00000006818 3 1 1 80 14 89220837 89220855 ACATCTCGGAGAAGGTGTC 59 89217389 89220796 ACTTCTTGGTAACACCATAGAC 58 NA Rattus norvegicus 81 Klk12 ENSRNOG00000034012 ENSRNOT00000024758 2 1 1 84 1 99706930 99708024 CAGTGGCAAGTACATGGTG 59 99708072 99708090 GGAGAAGGTGGTGAGTCTC 59 NA InUTR Rattus norvegicus 81 Orc6 ENSRNOG00000024043 ENSRNOT00000039467 3 1 1 80 19 27463567 27463585 CCTCAGAAACCAGCAATGC 60 27462296 27463526 TTAGATACGCTCTATCCAAGGG 59 NA Rattus norvegicus 81 Spc25 ENSRNOG00000006731 ENSRNOT00000008837 3 1 1 80 3 55444221 55444239 AAACGGCTGCAGAAATCAG 59 55441317 55444177 CTGCAGCTTATCACCAGGA 60 NA Rattus norvegicus 81 Il16 ENSRNOG00000011680 ENSRNOT00000016289 3 1 1 80 1 145786989 145787007 CACAAGGAAGAAGGTGCTG 59 145785312 145786945 TCTGTGAACCGTGATCACC 60 NA Rattus norvegicus 81 Cdr2 ENSRNOG00000017260 ENSRNOT00000023189 2 1 1 80 1 190901421 190914466 GGACCTCCAGCAAGATCTC 60 190901359 190901379 AGAGAATCCTCCAACTCTGTG 59 NA Rattus norvegicus 81 Ggh ENSRNOG00000007351 ENSRNOT00000009758 1 1 1 80 5 34051067 34051088 ATGACAACTTACTGACACTCAC 59 34051127 34053551 TTCTGCTCTGCTTTGAATCTC 59 NA Rattus norvegicus 81 Rftn2 ENSRNOG00000015594 ENSRNOT00000020910 2 1 1 81 9 61780505 61780523 GAGTCCCAGGCTCTAACAG 59 61779330 61780461 GTCTTGATTTCACAGCCCTC 59 NA Rattus norvegicus 81 Mir3551 ENSRNOG00000048590 ENSRNOT00000072847 3 1 1 62 X 151272885 151272904 ATGGGCAGTACTGTCTTCAC 60 151272842 151272863 CACCATGGTGAATTTCATAGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wnk1 ENSRNOG00000009956 ENSRNOT00000013355,ENSRNOT00000013621,ENSRNOT00000080788,ENSRNOT00000079513 3 4 4 80 4 152473335 152475510 CCGTCTCTAATTCAGACCCA 59 152473274 152473296 TGGAATAGTCTCTGGACTAAGTG 59 NA Rattus norvegicus 81 Klhl29 ENSRNOG00000005371 ENSRNOT00000084903 2 1 2 75 6 29239012 29239030 GTATGAGTTCACCGACCCA 59 29236867 29236885 ATAACATCGTGTGGTGCCT 59 NA DesignNoJunction Rattus norvegicus 81 Mplkip ENSRNOG00000013806 ENSRNOT00000018458,ENSRNOT00000080628 2 2 2 62 17 49956841 49956859 AGCATCAGTTCGGCTACTC 60 49955759 49956815 ATGTCCTTGGAGAACCCTG 59 NA DesignRelaxed Rattus norvegicus 81 RGD1563015 ENSRNOG00000006658 ENSRNOT00000008726 3 1 1 80 5 138263446 138263464 TTAATGCTTTGTCCCTGGC 58 138260977 138263403 AAGCACAGTGTGATTTCCTG 59 NA Rattus norvegicus 81 Nlrp4b ENSRNOG00000027705 ENSRNOT00000035435 2 1 1 80 1 73949306 73949327 AATGCCTATGAGATCATTGACC 58 73948442 73949267 CAGTTGGCTAACATGATAGCA 59 NA Rattus norvegicus 81 Ptdss2 ENSRNOG00000015912 ENSRNOT00000021925 1 1 1 80 1 214144656 214144674 GTGATGTTCGAGTTCCTGG 58 214144718 214144824 CATGATCCAATGGTCCCAC 58 NA Rattus norvegicus 81 Amdhd2 ENSRNOG00000006460 ENSRNOT00000008537 3 1 1 84 10 13530673 13530773 CATGTTGCCTTTCCACCAC 60 13530607 13530627 ATAGAAGATACAGTGGCCTGG 59 NA Rattus norvegicus 81 LOC679782 ENSRNOG00000042852 ENSRNOT00000062030 2 1 1 80 1 1618755 1618774 TGAACCAAAGCCTGAAAGAC 59 1618816 1619100 AGGTGTGATTACCCTTGGAC 60 NA Rattus norvegicus 81 Man2b1 ENSRNOG00000023910 ENSRNOT00000037699 2 1 1 80 19 26206596 26206616 AGAACTTCTCATTCTGTCGGG 60 26206655 26206915 AAATAATTACCCGGAAGTGCTC 59 NA Rattus norvegicus 81 RT1-M1-4 ENSRNOG00000027873 ENSRNOT00000038626 1 1 1 89 20 2390418 2390436 GCCCTGAAAGATATTCGGT 57 2390096 2390365 TGATATCCTGGACTCACCA 57 NA Rattus norvegicus 81 Susd2 ENSRNOG00000033389 ENSRNOT00000079996,ENSRNOT00000066773,ENSRNOT00000089005 3 3 3 80 20 13969766 13969785 AGGTCTTGGAAGTATTGCTG 58 13969828 13970522 ACAGAAACATGCCCTTCAG 58 NA Rattus norvegicus 81 Sgpp1 ENSRNOG00000005175 ENSRNOT00000006913 3 1 1 84 6 98683485 98683503 GGGCTGATTCTCATTCCCT 59 98677740 98683437 CAATGACGTCCAGGATGGA 60 NA Rattus norvegicus 81 Tank ENSRNOG00000008859 ENSRNOT00000011794,ENSRNOT00000081682 2 2 2 80 3 47475066 47475084 GCATATGAAGCCTTCCGAC 59 47475125 47488365 TTCATAGTTCTCAGTCTTCTGC 58 NA Rattus norvegicus 81 Ralgds ENSRNOG00000010219 ENSRNOT00000013809,ENSRNOT00000084092 3 2 2 80 3 7126637 7127766 TACAAGAGCATCCTGGTGAC 60 7127806 7127827 CTCATCTAGGTTGTGTTTGTCC 59 NA Rattus norvegicus 81 Slc24a1 ENSRNOG00000052051 ENSRNOT00000077152 1 1 1 80 8 70413546 70413564 CATCACCTTCCTGGGATCC 60 70412635 70413502 GTTTCACCAACCTGGTGAG 59 NA Rattus norvegicus 81 Rn60_14_0459.2 ENSRNOG00000051132 ENSRNOT00000073146 1 1 1 60 14 46070280 46070299 GGTTCAGACTTTGCTTCAGG 59 46070239 46070257 GGCCTGGTAAGTGTTTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem139 ENSRNOG00000028024 ENSRNOT00000033775 2 1 1 82 4 71650746 71650765 GTTATGGAACGGTGTCTCCA 60 71650810 71651047 TCATTGACCTGTGCATTGC 59 NA Rattus norvegicus 81 Kpna1 ENSRNOG00000051711 ENSRNOT00000078285,ENSRNOT00000084540 3 2 2 80 11 67672246 67672975 CAGAATTTGCTAAGGTTTCTCC 58 67672187 67672206 CATCAGCCAGTACATCAGTG 59 NA Rattus norvegicus 81 Ccdc109b ENSRNOG00000009433 ENSRNOT00000012587 2 1 1 80 2 230201339 230201359 TACGTTCTTCCTTACGTTTGC 59 230200178 230201300 GATTCGTAAGTGTAGTTCTGCC 59 NA Rattus norvegicus 81 Ddrgk1 ENSRNOG00000021232 ENSRNOT00000030192 3 1 1 80 3 123200302 123203377 AGGAAGAACAGAAGGAAGAGG 59 123200242 123200261 TCAGTTTCAGGTACTCCTCG 59 NA Rattus norvegicus 81 RGD1306746 ENSRNOG00000017380 ENSRNOT00000023654 1 1 1 80 4 118257417 118262041 ATCAGTTTGACGGCAAACC 59 118262083 118262103 TGGATATTCTCTGTTGCAAGG 58 NA Rattus norvegicus 81 Vdr ENSRNOG00000054420 ENSRNOT00000082429 3 1 1 80 7 139346987 139354202 CCCAGGATTCAGGGATCTC 59 139346925 139346944 GAGCGTAACATGATCACCTC 59 NA Rattus norvegicus 81 Ttc32 ENSRNOG00000049088 ENSRNOT00000073663 2 1 1 81 6 34155199 34159854 GTCACAGGAGCAAATGTAGC 59 34159895 34159916 AAATCAACGCTGAAGTACTTGG 60 NA Rattus norvegicus 81 Hoxa5 ENSRNOG00000006466 ENSRNOT00000008523 3 1 1 86 4 82257235 82258213 ATTAGTCACGACAACATAGGTG 58 82257170 82257188 TTCTTTCTCCAGCTCCAGG 59 NA Rattus norvegicus 81 RGD1564114 ENSRNOG00000028805 ENSRNOT00000049889 1 1 1 80 3 7542394 7542412 CAGCAGCTATGGATACAGG 58 7535833 7542352 CTTTCCCAGGATTACCTTCTG 58 NA Rattus norvegicus 81 Rn60_15_0538.1 ENSRNOG00000050211 ENSRNOT00000071777 2 1 1 60 15 49997531 49997551 CCTGTTTGTTCCTTTGATCCA 59 49997491 49997511 CCATTTCTGAGTTGACACCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slpi ENSRNOG00000046699 ENSRNOT00000076191 2 1 1 81 3 160801450 160801468 CCAGGAAAGCAGAGATGCT 60 160800913 160801405 TCTTCTTCACTGGTCCACG 59 NA Rattus norvegicus 81 Zmym1 ENSRNOG00000013855 ENSRNOT00000064015 2 1 1 81 5 145114415 145114433 ACGAAAGCCATGTGTTACC 59 145111081 145114370 GGGTGGTTTAGTGGATGTC 58 NA Rattus norvegicus 81 Supt16h ENSRNOG00000011953 ENSRNOT00000016288 3 1 1 80 15 28590432 28590543 CAGCAGATTCAGAAGGCTC 58 28590370 28590389 TTCCCGAATATGTGGTTCCT 59 NA Rattus norvegicus 81 Rbpms2 ENSRNOG00000015896 ENSRNOT00000021337,ENSRNOT00000081375 3 2 2 81 8 71191713 71191732 CTGATAGCAACACCAAACCC 59 71191775 71192200 CCATCAGGTCATAAGGGTCC 60 NA Rattus norvegicus 81 Rn60_X_0637.3 ENSRNOG00000051241 ENSRNOT00000076267 1 1 1 60 X 63102329 63102347 TTTCCGTCTTCCACTACGA 58 63102287 63102305 GTCTTGGCAAGTGAGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-M10-2-ps ENSRNOG00000054348 ENSRNOT00000082861 3 1 1 80 20 2460560 2460900 ATATTGGGAGAAGGAGACACC 59 2460940 2460960 GTAATTACCTCGGAGGAAGGT 59 NA Rattus norvegicus 81 Impad1 ENSRNOG00000027079 ENSRNOT00000033151,ENSRNOT00000034495 2 2 2 80 5 17643494 17643512 GAATGGTCAAACAGGTTGC 58 17642203 17643451 AAACCTTATAACCAGCACCA 57 NA Rattus norvegicus 81 Commd7 ENSRNOG00000010538 ENSRNOT00000014038 3 1 1 82 3 149103724 149103997 GTTTGGAGTGACGTCTGGA 60 149102457 149102477 TTCCTTTCTTAACCACCAGCT 60 NA Rattus norvegicus 81 LOC102551071 ENSRNOG00000054140 ENSRNOT00000089074,ENSRNOT00000085644,ENSRNOT00000082518 2 3 3 84 7 2907679 2907934 AGAGCGATGAGATGAATGTG 58 2907614 2907632 CCTTGGTCCTTGTTCTTGG 58 NA Rattus norvegicus 81 Tia1 ENSRNOG00000016813 ENSRNOT00000085787,ENSRNOT00000023103 1 2 2 80 4 118208114 118217804 TGCCCAAGACTCTATACGT 58 118217848 118217866 GTCCGATCTGGCTAAAGAG 57 NA Rattus norvegicus 81 Fzd2 ENSRNOG00000021962 ENSRNOT00000032944 2 1 1 60 10 90551228 90551251 CTTCATGATGCTGTACTTCTTCAG 60 90551270 90551288 GAGGGACAGAATCACCCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspan6 ENSRNOG00000003786 ENSRNOT00000005165 1 1 1 80 X 104723425 104723448 CAACTATAGAGTCAGAAATGGGAG 59 104721565 104723389 CGAGAAAGATTCCAATTAGCTG 58 NA Rattus norvegicus 81 RGD1565752 ENSRNOG00000038337 ENSRNOT00000058376 1 1 1 60 6 103820260 103820279 CTACTCCAGAGATGTCCTCC 58 103820301 103820320 TACCAAGTTGAGAACCTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000083622,ENSRNOT00000081091,ENSRNOT00000081695,ENSRNOT00000091967 3 4 7 111 20 2515882 2515900 CTCTGTGAAGAGGACGCTC 60 2517088 2517106 ACAGGTCTGTACTGTCCAG 58 NA DesignNoJunction Rattus norvegicus 81 Gpr156 ENSRNOG00000002797 ENSRNOT00000003773 2 1 1 80 11 65348683 65350355 ACAACCATTACCGACTCCC 59 65348621 65348641 AAAGGTCCAAATAACACCCAG 59 NA Rattus norvegicus 81 Ankrd22 ENSRNOG00000019190 ENSRNOT00000026093 1 1 1 80 1 252448614 252461201 TCCTATATTCTGAGCCCATCTG 59 252448555 252448573 GGTTGCTTTCTTTCACCCA 59 NA Rattus norvegicus 81 AABR07072207.1 ENSRNOG00000011155 ENSRNOT00000014838 3 1 1 175 10 105564935 105564954 CTCTCCTGAAAGCTTCTCCT 59 105565094 105565114 GGTTTGACCCTTCTGACCT 59 NA DesignNoJunction Rattus norvegicus 81 AABR07066648.1 ENSRNOG00000047075 ENSRNOT00000073673 2 1 1 81 9 12115066 12115086 GAAGTGTGACTTTGAGAGGGA 60 12115129 12115864 GACATCCAGCCTGTAGTCC 60 NA Rattus norvegicus 81 RGD1309748 ENSRNOG00000002545 ENSRNOT00000003439 3 1 1 80 10 6858574 6868743 CCAACCTCTATAAAGAAAGTGTGG 60 6858517 6858536 TATTTCGTCGCTGATAGCCA 59 NA Rattus norvegicus 81 Ramp1 ENSRNOG00000019926 ENSRNOT00000027012 2 1 1 94 9 98334299 98363637 GACCATAGGGAGCTATGGG 59 98363695 98363713 AGAACTTGTCCACTTCCGG 60 NA Rattus norvegicus 81 Tbc1d10b ENSRNOG00000017349 ENSRNOT00000023706 2 1 1 80 1 198648354 198648632 TTTCCAGAAGGTAAAGCTACG 58 198648294 198648314 CTATTAGACAGGTACTGCCAG 57 NA Rattus norvegicus 81 Espnl ENSRNOG00000024717 ENSRNOT00000033629 2 1 1 80 9 98480222 98481809 AGAAGATCAGGACCAGAGTC 58 98481852 98481870 TGAGTCTGCGAATACCTCC 59 NA Rattus norvegicus 81 Mettl5 ENSRNOG00000008469 ENSRNOT00000011303 1 1 1 80 3 56102333 56104158 AGATTATCGCAGAGCTTCG 58 56101799 56101817 GGTCCACTTCAATGTCCAC 59 NA Rattus norvegicus 81 Naa16 ENSRNOG00000045863 ENSRNOT00000071805 1 1 1 80 15 61636022 61639928 GCAACTCCGTTCTCTAGAC 58 61635960 61635978 CTTCTCGGTGAAACTGCTC 59 NA Rattus norvegicus 81 Tgfbrap1 ENSRNOG00000024562 ENSRNOT00000037094,ENSRNOT00000079239 1 2 2 80 9 49867750 49872077 GAAGTTTCAGGTAATGTACAGGAG 59 49867693 49867711 TTTGCTTCCAGGAACTGGA 59 NA Rattus norvegicus 81 Rogdi ENSRNOG00000003125 ENSRNOT00000004176 2 1 1 80 10 10761873 10762665 ATCCTTAAGGAGGCCTCTC 58 10762709 10762727 CAGGATGAAGTTCTCCTGC 58 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000083301,ENSRNOT00000085906 2 2 8 80 13 68719271 68719484 TCTTAACATTCGTAGACACCAG 58 68719525 68719543 TTCCAAGATTCTGCACCTC 58 NA Rattus norvegicus 81 Kctd13 ENSRNOG00000020010 ENSRNOT00000027129 3 1 1 105 1 198374455 198375473 TACTCCTATACCAGCACTTCAG 59 198375539 198375557 GGACGTCCTTGAGGAAGAG 60 NA Rattus norvegicus 81 Mir181a2 ENSRNOG00000035630 ENSRNOT00000053753 2 1 1 60 3 23150363 23150381 CAAGGCAGCCTTAAGAGGA 59 23150404 23150423 TTGAATCCCAAACTCACCGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910611 ENSRNOG00000046375 ENSRNOT00000074588 2 1 1 82 1 82817043 82818369 CTGCTCAGATATGCTGACCT 59 82818413 82818432 ATTTCCACTCAACTGCTGTC 59 NA Rattus norvegicus 81 Adcy8 ENSRNOG00000004890 ENSRNOT00000006789 2 1 1 80 7 105404722 105404741 ATACCCTTGAAGAACCTGAC 57 105394828 105404681 AGTGAAGACAAAGTACTCTGG 57 NA Rattus norvegicus 81 Phpt1 ENSRNOG00000016723 ENSRNOT00000022495 3 1 1 80 3 2797296 2797808 ATGGCTATTCTATGGGTTACGG 60 2797237 2797259 CCTCATAATCAGGATACTTGGCT 60 NA Rattus norvegicus 81 Chrne ENSRNOG00000003777 ENSRNOT00000005050 2 1 1 80 10 57241739 57241757 TCTTTGCAGTGGATGACGA 59 57241405 57241695 CCCATTCTCCATTCTCGGT 59 NA Rattus norvegicus 81 Adgrv1 ENSRNOG00000016306 ENSRNOT00000076313,ENSRNOT00000039652 2 2 4 80 2 8935255 8938877 ATGGAAGAGGTGCCATCTG 60 8935193 8935213 GGGACTTGTCTTCAAATCAGG 59 NA Rattus norvegicus 81 Tas2r114 ENSRNOG00000005692 ENSRNOT00000007497 1 1 1 60 4 165831509 165831530 TGACTATTGCATTCCTCTATCC 58 165831470 165831490 CGGCTGTATGCTAGAATTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pth ENSRNOG00000014318 ENSRNOT00000019199 1 1 1 62 1 178216458 178216476 TTTGTCTCCTTACCCAGGC 59 178216303 178216323 GCTGTATTTCACTGACAGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_6_1181.1 ENSRNOG00000027960 ENSRNOT00000039048 2 1 1 88 6 107572771 107575371 CCCAAGGACACCTTAGGTC 59 107572701 107572719 GGAAAGAGGCCATGGAGAG 60 NA Rattus norvegicus 81 Olr796 ENSRNOG00000049431 ENSRNOT00000043710 2 1 1 60 3 103249270 103249289 AAATGAAGAGGGCAATGAGG 58 103249309 103249330 CAAGAGATTTGTCTATAGCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 E2f2 ENSRNOG00000047741 ENSRNOT00000072618 3 1 1 87 5 154527957 154527975 CTTCAAGGAGCAGACAGTG 58 154528026 154530726 AATCTGCAGGTTCTCCTCC 59 NA Rattus norvegicus 81 Rhot1 ENSRNOG00000004093 ENSRNOT00000082685,ENSRNOT00000006218,ENSRNOT00000079696 2 3 4 80 10 67594740 67602001 GAGGAGAAAGAGATGAAACCA 58 67602041 67602061 AGTGCCATCATTATCTTGGTC 58 NA Rattus norvegicus 81 Hoxb3 ENSRNOG00000008313 ENSRNOT00000011027 3 1 1 212 10 84193591 84193609 AAAGAGTCAAGGCAAACGT 58 84194614 84194632 CTCCTTCTCCAGCTCAACC 60 NA DesignNoJunction Rattus norvegicus 81 Hsf4 ENSRNOG00000015253 ENSRNOT00000065013 2 1 1 80 19 37231027 37231160 ATGGAGTTGTCTCTGATGCA 59 37231202 37231221 ACCTGAAGAAGTCAAGTCCT 58 NA Rattus norvegicus 81 Rpl18 ENSRNOG00000021035 ENSRNOT00000028555 3 1 1 81 1 101702000 101702018 CACAACAAGGACCGAAAGG 59 101702062 101702276 ACCTGTACAGCTTGACTAGC 60 NA Rattus norvegicus 81 Parp4 ENSRNOG00000051196 ENSRNOT00000076460 2 1 4 80 15 36878957 36879184 TCATTGTACACAGGCATCC 58 36879226 36879246 TTCTGAAGCTCTGTAGTTGAC 58 NA Rattus norvegicus 81 Parp4 ENSRNOG00000051196 ENSRNOT00000076030 3 1 4 80 15 36905013 36905032 ACCAAGTTGGAACAAGAAGG 58 36905069 36910632 CCATGGAATATTCCTAGAAATGAGG 59 NA Rattus norvegicus 81 Tubb4b ENSRNOG00000010170 ENSRNOT00000013863 3 1 1 96 3 2443901 2444225 GTTCTGGGAGGTAATCAGC 58 2443823 2443841 GTAGTACACGTTGATGCGC 59 NA DesignNoJunction Rattus norvegicus 81 Olr1166 ENSRNOG00000046909 ENSRNOT00000048326 2 1 1 60 8 20266580 20266599 AATCCCTTCCTCAAGTAGCA 59 20266622 20266640 TACGGACAGATGAGAACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000020012 3 1 7 129 17 57074600 57082578 GATGAAACTGCTGCCACAG 60 57082670 57082689 CTTCTTCTGCTAGTTGCTGG 59 NA Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000092187,ENSRNOT00000020012,ENSRNOT00000089536 1 3 7 74 17 57082684 57082702 AAGAAGCAACTCGAAAGCG 59 57087779 57087797 TCTTCTTCCTGCGACACTC 60 NA DesignNoJunction Rattus norvegicus 81 Prss55 ENSRNOG00000047258 ENSRNOT00000072994 2 1 1 96 15 47439005 47442520 CAAATGTTGAATGCGGTGTG 59 47438928 47438946 CATGGGAATTCACCCACCT 60 NA Rattus norvegicus 81 Hesx1 ENSRNOG00000014133 ENSRNOT00000019113 3 1 1 84 16 2636221 2636239 AATGAACTGCTATCCTGGC 58 2636285 2636386 GAACCAAATCTGGATTCTGTC 57 NA Rattus norvegicus 81 Il5ra ENSRNOG00000005954 ENSRNOT00000008403 2 1 1 80 4 138803047 138804049 ATCTGCAGAGTGTATCACCT 58 138802986 138803005 CACAGGGAGATCTTTGATGC 59 NA Rattus norvegicus 81 Olr332 ENSRNOG00000024746 ENSRNOT00000035813 1 1 1 60 1 229461912 229461930 ACCCAGTTCAAGCTATTCC 57 229461953 229461972 CACCACAGCATAGAAGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nfix ENSRNOG00000002983 ENSRNOT00000091994,ENSRNOT00000039354 1 2 2 80 19 25841438 25841457 GTTTCCAGGACTGCTTTGTG 60 25841028 25841395 CAGTTGCAACAGGAGTCTG 59 NA Rattus norvegicus 81 LOC102556447 ENSRNOG00000036958 ENSRNOT00000055537 1 1 1 80 2 238407383 238436974 ACTGAGAAGCAAACAGATTGAC 59 238407324 238407343 TTGGCTGAAATCTGATGCAC 59 NA Rattus norvegicus 81 Fosb ENSRNOG00000046667 ENSRNOT00000091687 2 1 2 86 1 80218958 80218976 TCAACTAGCACAAGCACCA 60 80217054 80218910 ATCCGTTTCTGTTTCTTCTCG 59 NA Rattus norvegicus 81 Lhx2 ENSRNOG00000010551 ENSRNOT00000064507,ENSRNOT00000014452 2 2 2 83 3 22642328 22643276 AAAGAAGACTACTACAGGCGG 60 22643321 22643339 ACGCATCACCATCTCTGAG 60 NA Rattus norvegicus 81 Pcdh8 ENSRNOG00000013101 ENSRNOT00000017599 1 1 1 60 15 62197829 62197848 CATCAACCACATGCAGAGTG 60 62197396 62197414 ATGGCCTAGGATCTTGCAC 60 NA DesignNoJunction Rattus norvegicus 81 LOC100911148 ENSRNOG00000046157 ENSRNOT00000065898 1 1 1 111 1 147081450 147081468 TAACATCCAAGCCCAGGTC 59 147081627 147081645 TTGGGTGAGACAGAGATGC 59 NA DesignNoJunction Rattus norvegicus 81 Olr246 ENSRNOG00000050375 ENSRNOT00000050651 1 1 1 60 1 172265315 172265333 GATTCCCATGTTGAACCCT 57 172265356 172265375 CATAGCCTCCTTTACCTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC24906 ENSRNOG00000002820 ENSRNOT00000080540,ENSRNOT00000003797 1 2 2 80 10 43875439 43878840 TGGCCAAGGAATTAGGGAG 59 43878884 43878902 ACGTTCTTCAAGTTGCAGG 59 NA Rattus norvegicus 81 Fut4 ENSRNOG00000009157 ENSRNOT00000012176 2 1 1 60 8 13261763 13261781 GAACTTCGAATCACCCTCC 58 13261721 13261740 ATTGAAGAGGTCCTTAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl22l1 ENSRNOG00000011817 ENSRNOT00000015756 1 1 1 62 2 115362914 115363888 GCAGAAAGACAAGAAGCCT 58 115363914 115363932 ACTGGATGAGTAAGGTCCA 57 NA DesignNoJunction Rattus norvegicus 81 Wdr73 ENSRNOG00000010664 ENSRNOT00000032294 3 1 1 81 1 142714069 142718414 AGACAACGATGTCATTGAAGC 59 142714008 142714026 GAAGATAGAGACCCGAGGC 59 NA Rattus norvegicus 81 B3gntl1 ENSRNOG00000049724 ENSRNOT00000071141 3 1 1 80 10 110807919 110814347 GTCCTTGAGATGACCATCTG 58 110807858 110807876 GATGGTGAAGGACTTCCAG 58 NA Rattus norvegicus 81 Tmem35 ENSRNOG00000001506 ENSRNOT00000002058 2 1 1 80 X 105134886 105143808 ACAGTGAGATGAAACGTGC 59 105143850 105143870 GGAGAATGGAATTAATGCCCA 59 NA Rattus norvegicus 81 Oit3 ENSRNOG00000046365 ENSRNOT00000075682 3 1 1 80 20 29017311 29020351 AAGACTTGCGAAGACATCG 58 29017249 29017267 ATAACCCTTCTCAGACCCA 57 NA Rattus norvegicus 81 Tsn ENSRNOG00000002319 ENSRNOT00000068524,ENSRNOT00000044095 2 2 2 80 13 34250286 34250307 TTTAGAACAAACTGCTCGAGAG 59 34249226 34250248 CTCTTTGGAATGTCCTGAAACC 60 NA Rattus norvegicus 81 Pdcd5 ENSRNOG00000013250 ENSRNOT00000017708 1 1 1 80 1 91175064 91175725 GGCCAGGTTAAGTAACTTAGC 59 91175004 91175024 TACCGTGCCATCTGTATAAGG 60 NA Rattus norvegicus 81 Kcnj14 ENSRNOG00000021056 ENSRNOT00000028591 3 1 1 158 1 101808395 101808413 GTCTTCAGTGAGAACGCAG 59 101806970 101806988 GTCCAGTGGGATGTACTCG 60 NA DesignNoJunction Rattus norvegicus 81 Olr411 ENSRNOG00000007911 ENSRNOT00000010360 2 1 1 60 3 20852937 20852961 CTCTATTATGGGTCCATTATTGGTC 59 20852901 20852922 TGTTGATTGTACTGTTGGATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Amer1 ENSRNOG00000007984 ENSRNOT00000051132 3 1 1 181 X 64702320 64702338 GAGGTTCCAGCTCAGATCC 60 64689935 64689957 CTGTTTCATCCTGTTGAATCTCC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Zfp800 ENSRNOG00000007662 ENSRNOT00000010223 2 1 1 80 4 55521367 55521387 TTGTTACAGCAACCAGTACAG 59 55509960 55521327 AAGTTGTTTGGTTCCTGATCG 59 NA Rattus norvegicus 81 Zmynd11 ENSRNOG00000014670 ENSRNOT00000045183,ENSRNOT00000049391 1 2 2 80 17 63836371 63838112 TACAAGAGAAGGTGAATGAGGG 60 63836312 63836330 CTGTGTTGTGGAGAAGCAG 59 NA Rattus norvegicus 81 Zmynd11 ENSRNOG00000014670 ENSRNOT00000045183,ENSRNOT00000049391 3 2 2 80 17 63829679 63829698 AGGAGATCAAGAAGCTAGCG 59 63827765 63829636 CCTCACAGTTGTAGCACCA 60 NA Rattus norvegicus 81 Evi5l ENSRNOG00000001034 ENSRNOT00000079918 2 1 2 80 12 2590181 2590199 ACAGAACAAGGGACTCCAG 59 2590036 2590139 ACTTCCTCCTTACTCTTGCAC 60 NA Rattus norvegicus 81 Cpped1 ENSRNOG00000015118 ENSRNOT00000045047 3 1 1 84 10 3735507 3773588 TTCACCAGAGCAGGTATCC 59 3773635 3773654 CCACCATGTCAAGATTCTGG 59 NA Rattus norvegicus 81 Apip ENSRNOG00000007446 ENSRNOT00000009797 2 1 1 80 3 92991446 92992174 TACACCATGAGAGGAGCAG 59 92992218 92992236 CTGTCCTGGAAACAGAAGG 58 NA Rattus norvegicus 81 AABR07054370.1 ENSRNOG00000046585 ENSRNOT00000072917 1 1 1 80 3 150188564 150188584 GCAAGAAACAAGAGTTTCTGG 58 150188626 150206682 TTCTCTTGTCTTTGGTGCC 58 NA Rattus norvegicus 81 Reep4 ENSRNOG00000011373 ENSRNOT00000015169 3 1 1 80 15 52237279 52237298 GAAACCATGCTCAGTTTCGG 60 52237340 52237510 ACCTTGACTCTTGGTAGCAG 60 NA Rattus norvegicus 81 Akr1b1 ENSRNOG00000009513 ENSRNOT00000012879 1 1 1 82 4 61713812 61713831 CCAACTTCAACCCTCTTCAG 59 61713352 61713768 GCACTCGATCTGGTTAACAG 59 NA Rattus norvegicus 81 Olr1456 ENSRNOG00000046792 ENSRNOT00000052167 2 1 1 60 10 44730378 44730398 GGCTTCATTCTCTTAGGACTC 58 44730420 44730438 CCAGCACAAAGAGGAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhx36 ENSRNOG00000014599 ENSRNOT00000019824 1 1 1 80 2 152814577 152814598 ATCGAAAGAGGAATAGGGTCTG 60 152813325 152814537 CCTCTCAGCAACTGAAATGG 59 NA Rattus norvegicus 81 Musk ENSRNOG00000033567 ENSRNOT00000048457 1 1 1 80 5 75463015 75463035 GCTACCAATAAGCATGGAGAG 59 75463076 75475461 CTGTGATTTGCTGAAAGCTG 58 NA Rattus norvegicus 81 Ttc7a ENSRNOG00000014879 ENSRNOT00000061747,ENSRNOT00000086247 2 2 2 80 6 10961896 10961916 AATGCTTCAGCCATTTACGAC 60 10961957 10962525 TTCTAGGCACTCAGAAAGCA 59 NA Rattus norvegicus 81 Afap1l1 ENSRNOG00000019403 ENSRNOT00000026495 1 1 1 80 18 57080279 57080866 CGAAGAGCTCCTACAATGAC 58 57080218 57080236 GTCCCTTCTCTTCCTCCTC 59 NA Rattus norvegicus 81 Nadk2 ENSRNOG00000054157 ENSRNOT00000083799 3 1 1 81 2 58489130 58489148 TTCAGGACCTCAGCTTCTG 59 58489190 58493315 ATAGTAAGAAGCCCTGGATGAC 60 NA Rattus norvegicus 81 Tshr ENSRNOG00000003972 ENSRNOT00000005671 3 1 1 80 6 115268625 115268644 CAGACAACCCTTACATGACG 59 115268684 115273004 TGTATAGTTTCAGGGTCAAGGT 59 NA Rattus norvegicus 81 Tceal1 ENSRNOG00000002387 ENSRNOT00000044372 3 1 1 94 X 107370505 107370523 TTTGGTCGAGAAGGAAAGC 58 107371315 107371334 GCTCTGTGGTTGTTCTTCAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1561282 ENSRNOG00000043071 ENSRNOT00000066837 3 1 1 118 3 177164470 177165900 CTGAGAGGCCTATGGTACC 59 177165982 177166000 GAGTACCTCCTGGACACTG 59 NA InUTR Rattus norvegicus 81 Vsig2 ENSRNOG00000033490 ENSRNOT00000042679 2 1 1 80 8 40011990 40012879 GGTTCAAGATGAAGTGTCTGG 59 40012921 40012939 CTGGCTACACATCGGTAGG 60 NA Rattus norvegicus 81 Tmem231 ENSRNOG00000021517 ENSRNOT00000031243,ENSRNOT00000088297 3 2 2 81 19 44143515 44143533 ACATGTGAATGGTGACCTG 58 44141135 44143472 CACCGATACGTTGTATCTGAC 59 NA Rattus norvegicus 81 Tars2 ENSRNOG00000057194 ENSRNOT00000087052 1 1 1 80 2 197868273 197868291 GCCTTGGAAGAGTTTGGAG 59 197863690 197868231 GAGGTGCACATCAATCTTAGG 59 NA Rattus norvegicus 81 Nrros ENSRNOG00000001752 ENSRNOT00000050364 3 1 1 108 11 71884243 71884261 GATTGTGGAATGGAGGAGC 58 71887708 71887727 TACTGAAGCGAGGTTCAGAC 60 NA DesignNoJunction Rattus norvegicus 81 Sec61a1 ENSRNOG00000013743 ENSRNOT00000018454 3 1 1 80 4 120457124 120457142 TCATCTCCCAGATGCTGTC 59 120456820 120457080 CAGATGACGTATCCGACCA 59 NA Rattus norvegicus 81 Prrc1 ENSRNOG00000016433 ENSRNOT00000022017 1 1 1 80 18 52441145 52441166 CTGGATAAGACCAAGCATTCTG 59 52441204 52443477 GCCTCCAGATTTGATATACGGA 60 NA Rattus norvegicus 81 Rnf207 ENSRNOG00000033722 ENSRNOT00000046552 3 1 1 80 5 169490649 169490944 GAGATTTATGAAGCCCAGCTC 59 169490589 169490607 GATCTGCTTGGTGATGGTG 59 NA Rattus norvegicus 81 Tmem134 ENSRNOG00000022153 ENSRNOT00000030340,ENSRNOT00000030324 3 2 2 81 1 219379109 219379202 CTAGTCCCAGGAGTCTACCA 60 219379246 219379264 AGGGCAGGTAGAAGAACTG 59 NA Rattus norvegicus 81 AABR07012277.1 ENSRNOG00000037341 ENSRNOT00000056498 2 1 1 198 2 192148038 192148056 CTCCTCCTGTATGCCTACC 59 192148218 192148236 CAAGGTGGAGTTTGCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_4_0539.1 ENSRNOG00000053425 ENSRNOT00000089519 1 1 1 60 4 54121327 54121345 CCTAGAATGGGTGCAATGG 58 54121366 54121387 AAGAGTTACAACATGTCACCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wac ENSRNOG00000018698 ENSRNOT00000058852 1 1 1 80 17 60897980 60897998 CCTGAACCCTACATTTGCG 59 60897912 60897938 TGAAGTAATGGAGGTATCGACTG 60 NA Rattus norvegicus 81 Smg1 ENSRNOG00000047386 ENSRNOT00000072266,ENSRNOT00000089399 2 2 2 80 1 187803944 187804827 CAACACAGATATTCTGAGCATACTC 60 187803888 187803907 CTCATTCAGCTTCACCTGGA 60 NA Rattus norvegicus 81 Ankdd1a ENSRNOG00000015554 ENSRNOT00000073571,ENSRNOT00000033512,ENSRNOT00000075734 2 3 3 80 8 71046691 71048848 GAAAGCAAGGATGGTTTGAC 58 71046630 71046648 GTCTTCCATGATGAAGGCT 57 NA Rattus norvegicus 81 Mrto4 ENSRNOG00000017979 ENSRNOT00000024326 1 1 1 80 5 157815871 157815891 GCTGTCTGACTATGAAGTGTG 59 157815699 157815830 TCATACCCAAACAGCTTCAG 58 NA Rattus norvegicus 81 LOC100911204 ENSRNOG00000026378 ENSRNOT00000041727 2 1 1 86 3 112539157 112540208 GAAGAGAATGACAATACACAGAGG 59 112541444 112541463 TTTGAGGTCCTGAAGAGGAC 59 NA Rattus norvegicus 81 LOC681198 ENSRNOG00000040020 ENSRNOT00000061522 1 1 1 89 15 5667219 5667238 CACAAGATGCAGAAGGAGAG 58 5539923 5667169 AGACTCAAAGTTGTTCCTGTC 58 NA Rattus norvegicus 81 Cib4 ENSRNOG00000009898 ENSRNOT00000013123 3 1 1 81 6 27301832 27301851 TCTGGACAATGACAACATGC 59 27301892 27303432 CCGAAAGGAGTTCATGAAATCC 60 NA Rattus norvegicus 81 Tcp11 ENSRNOG00000000499 ENSRNOT00000045044 2 1 1 81 20 7647795 7647926 ATGAAGAGTTTCCTGAGACCC 60 7647734 7647753 AGGATGGTTAGCTGGTTCTG 60 NA Rattus norvegicus 81 Rlbp1 ENSRNOG00000016897 ENSRNOT00000022962 3 1 1 80 1 141098795 141098991 TTGCTACAGAGGGTCTTCG 59 141098733 141098753 GTCAGCAGGCAAGATATTCTC 59 NA Rattus norvegicus 81 Idh1 ENSRNOG00000015020 ENSRNOT00000020322 3 1 1 80 9 71884500 71884518 GCATTGAGACCATTGAGGC 59 71883002 71884456 CAGAACGCTGTACATTGGG 59 NA Rattus norvegicus 81 Ppp1r13l ENSRNOG00000025350 ENSRNOT00000047105 3 1 1 81 1 80279983 80281258 GGAGTTCCCTCTAGGATGTC 59 80281300 80281320 CTATCTTCTGTAGGGACCCTC 59 NA Rattus norvegicus 81 Gstt3 ENSRNOG00000001242 ENSRNOT00000036518 1 1 1 84 20 13822763 13822781 CGTGTGGATGAGTACCTGG 60 13822829 13824510 ACTGACAGGTCACCTTCTG 59 NA Rattus norvegicus 81 Spag16 ENSRNOG00000042609 ENSRNOT00000068450 1 1 1 80 9 77605546 77772375 TCAGGTAGGGTATTGAGAAGG 58 77833166 77833185 CAGTTTGTGAATTTGCCCAG 58 NA Rattus norvegicus 81 Tmem87a ENSRNOG00000008455 ENSRNOT00000067836 2 1 1 80 3 112140988 112141008 GAGGAACATCGTAAAGCTCTC 59 112139934 112140948 ATGAACACTATAGATGCTGCC 58 NA Rattus norvegicus 81 Esr2 ENSRNOG00000005343 ENSRNOT00000042682,ENSRNOT00000043602,ENSRNOT00000041872,ENSRNOT00000007109 3 4 4 87 6 99166537 99166555 GAGTGGTATCTCCTCCCAG 58 99165215 99166486 GCCCTTGTTACTGATGTGC 59 NA Rattus norvegicus 81 Dpep2 ENSRNOG00000023303 ENSRNOT00000034722 2 1 1 80 19 37967154 37967172 GTGATGGTGACCTTTGCTG 59 37965424 37967111 GTGATCAAAGTGATCTGCCA 58 NA Rattus norvegicus 81 Sgol2 ENSRNOG00000027035 ENSRNOT00000029526 3 1 1 80 9 64917338 64917356 TCTTCACACCAGATGAGGA 58 64917397 64922731 TCTTCTCATCTTGCTTCTAAGG 58 NA Rattus norvegicus 81 Mcart1 ENSRNOG00000039278 ENSRNOT00000088375 2 1 1 60 5 61123765 61123784 TAAGGAGCATCTGCCTACTG 59 61123724 61123742 ACAGATGAAGTCGTTGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B3gnt6 ENSRNOG00000014471 ENSRNOT00000046850 1 1 1 60 1 163148917 163148935 TCTCCTCTCGCAAAGACAC 60 163145437 163145455 CTTGGGAGTCTTGGACCTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Kdelr3 ENSRNOG00000013577 ENSRNOT00000087888 1 1 1 80 7 120757403 120758105 GCACCAATGGAGATTCTCTG 59 120758146 120758166 CTTGCTGATCATGAAGAGCTG 60 NA Rattus norvegicus 81 Kdelr3 ENSRNOG00000013577 ENSRNOT00000087888 3 1 1 80 7 120758281 120758299 ATCTCAGTGGTGTCTGGAG 58 120758341 120759588 TCCTTTAAGGACTTTGGTCAC 58 NA Rattus norvegicus 81 Mmp19 ENSRNOG00000006778 ENSRNOT00000008909 1 1 1 80 7 3216606 3216624 GCTGGCCTTCTTACTTCCT 59 3216668 3217116 AACAGGTAATCCACCACCG 60 NA Rattus norvegicus 81 Olr136 ENSRNOG00000024877 ENSRNOT00000034108 1 1 1 60 1 169129061 169129079 ACTGTTAAGGAGACTGCCC 59 169129100 169129121 GTGGAGACAATAGGAATGAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msantd4 ENSRNOG00000022245 ENSRNOT00000034482 2 1 1 99 8 1510794 1510812 AGAATGTGGCAGATTTCCG 58 1510874 1511486 TCCTCAATCTCAAATTCGGG 58 NA Rattus norvegicus 81 Rn60_X_0594.1 ENSRNOG00000051096 ENSRNOT00000076001 3 1 1 61 X 58512590 58512610 CTATTCCACTGGTCTATCTGC 58 58512633 58512651 TTTCTGGAATTCCCATCCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Inmt ENSRNOG00000011250 ENSRNOT00000015316 3 1 1 82 4 85384625 85384643 CTGAAGAAGGAGCCAGGAG 60 85382537 85384579 TGCCATCTGCTTCTGTCTC 60 NA Rattus norvegicus 81 Zpbp ENSRNOG00000027801 ENSRNOT00000039182 3 1 1 90 14 91491360 91491379 TTAAGTCTGAATGCCATCGT 57 91469015 91491310 TCAGTGTCTATAGATGCAACTG 58 NA Rattus norvegicus 81 Rpl37a ENSRNOG00000023385 ENSRNOT00000030761 2 1 1 89 9 80003823 80003841 AAGATGAAGAGACGAGCCG 60 80003891 80004889 AGAAGTGGTATTGTAGGTCCAG 59 NA Rattus norvegicus 81 Napa ENSRNOG00000001494 ENSRNOT00000002044 2 1 1 80 1 78008234 78008724 CAGACATGGGCAGATTCAC 59 78008767 78008786 CTACATCCACCAGTTCTGTC 58 NA Rattus norvegicus 81 Pipox ENSRNOG00000008798 ENSRNOT00000012154 2 1 1 80 10 64961676 64961697 AAGTAGGGCTCTTAGACAAGAC 59 64961737 64962047 GCTGACGAATTACATGCTGG 60 NA Rattus norvegicus 81 Smurf1 ENSRNOG00000000999 ENSRNOT00000084577,ENSRNOT00000082989 1 2 2 80 12 11505220 11505240 GAGACAGAATAGGTGGTGGAG 60 11505278 11506924 CTGAGTCTTCATATACCGTTCCT 60 NA Rattus norvegicus 81 Crygd ENSRNOG00000032219 ENSRNOT00000050886 3 1 2 61 9 71778300 71778318 CAACTGAAACCTCCCATCC 58 71778170 71778278 CCTCATAGAAGGTGATCTTCCC 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 Cep97 ENSRNOG00000001609 ENSRNOT00000002191 2 1 1 80 11 47161689 47162419 TGAGCAAACAGAGGTTTCAC 59 47162461 47162480 TTTCAACAGCAGCAATAGGA 58 NA Rattus norvegicus 81 Mtr ENSRNOG00000017593 ENSRNOT00000023974,ENSRNOT00000083172 2 2 2 80 17 66256286 66258074 GAAACTATGAGGAAGCCCTG 58 66256225 66256245 CGTCATCCATGTTGATATCCA 58 NA Rattus norvegicus 81 RGD1562953 ENSRNOG00000033843 ENSRNOT00000041410 2 1 1 60 1 282064663 282064681 CCTGGGTCCTAAGTCTGTG 59 282064704 282064723 GAGTTCTTTAGCCTTTGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3566 ENSRNOG00000046071 ENSRNOT00000071480 1 1 1 60 17 21353625 21353646 GGGAAATGTAGTTCAAAGTTCG 58 21353664 21353685 GTGGTAGTTCATTGTTAGGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_14_0866.4 ENSRNOG00000030988 ENSRNOT00000050532 1 1 1 60 14 85902546 85902566 CAGAGGTGCTTAGACTTTGTG 59 85902506 85902524 TGGTCATCGGAAGAGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mmp20 ENSRNOG00000021896 ENSRNOT00000033306 2 1 1 81 8 5842773 5842791 TGATGTGGCTAACTACCGC 60 5842830 5845996 TGTGTACTTAGAGACTCTGTATGTC 60 NA Rattus norvegicus 81 AABR07055539.1 ENSRNOG00000058125 ENSRNOT00000034346 2 1 1 80 7 5573635 5573656 CATCATGAATCAGAAAGTCTGC 58 5573574 5573594 AACATGAGCAATGGGATGG 58 NA Rattus norvegicus 81 Foxa3 ENSRNOG00000014256 ENSRNOT00000019219 2 1 1 74 1 79930117 79930135 CTCAGTGAAGATGGAGGCC 60 79922629 79930079 ACTGGAGAATACACCTCGC 59 NA DesignRelaxed Rattus norvegicus 81 Pgls ENSRNOG00000018326 ENSRNOT00000024827 3 1 1 62 16 20023815 20023833 CTATGCCAGGAAACTGAGG 58 20024316 20024334 ATCAGCAGGTCAAACACAG 58 NA DesignNoJunction Rattus norvegicus 81 Ghrhr ENSRNOG00000011808 ENSRNOT00000081953,ENSRNOT00000044578,ENSRNOT00000084855,ENSRNOT00000016087 1 4 4 128 4 85597914 85597932 TCAACTTCCTGCCTGACAG 60 85599377 85601225 AAATCTCCGTCCTCACCTC 59 NA Rattus norvegicus 81 Cr2 ENSRNOG00000034164 ENSRNOT00000080616,ENSRNOT00000010910 3 2 2 80 13 113913453 113915191 GTCTGTGAGAGTGATTTCCC 58 113913392 113913410 TTCAACATGCTGTCCTGTG 58 NA Rattus norvegicus 81 Elovl6 ENSRNOG00000048949 ENSRNOT00000071270 2 1 1 82 2 234452426 234476258 GTCTTCAGTATATTCGGTGCTC 59 234476301 234476319 CAAACTGACTGCTTCAGGC 60 NA Rattus norvegicus 81 RGD1562699 ENSRNOG00000042716 ENSRNOT00000065939 1 1 1 86 18 59818605 59819021 CATCCCTTCCTGGAGAGTC 59 59818537 59818555 AATCGTGTAATCGCAGAGC 58 NA Rattus norvegicus 81 Rarb ENSRNOG00000024061 ENSRNOT00000033048 3 1 1 80 15 10185759 10185778 AGGTCACTAGGAATCGATGC 59 10185819 10246740 CATTCCTGACAGACTCTTTGG 59 NA Rattus norvegicus 81 Actr1a ENSRNOG00000019725 ENSRNOT00000026792 2 1 1 80 1 266132381 266134440 CTGCTTTCCAAACTATGTGGG 60 266132321 266132339 GGGCCAATGAAGATGTCAC 59 NA Rattus norvegicus 81 Rn60_14_1004.2 ENSRNOG00000060606 ENSRNOT00000082964 1 1 1 60 14 100173359 100173380 AATGACAGATACAACGAGATCC 58 100173401 100173419 CAGACTTAGGACCCAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zdhhc18 ENSRNOG00000058156 ENSRNOT00000081470 2 1 1 80 5 151837977 151850289 GGAGAAGCAGATCGATAACAC 59 151837917 151837937 ATTTGTCCGTTGATCATCACC 59 NA Rattus norvegicus 81 March4 ENSRNOG00000016472 ENSRNOT00000022076 1 1 1 93 9 79802927 79807849 AATCCTCTACAGTGGCAGG 59 79802852 79802870 TACTGGCGATGAGGAAGAG 59 NA Rattus norvegicus 81 Clec3a ENSRNOG00000012238 ENSRNOT00000016307 3 1 1 81 19 46738532 46740831 TGCAGACAGTCTGTCTTCG 60 46740875 46740894 GCTTCGTGGTAATGCTTGAG 60 NA Rattus norvegicus 81 Ovca2 ENSRNOG00000003111 ENSRNOT00000004150 1 1 1 144 10 62020419 62020437 CTTCCGTGAGAAGACTGGG 60 62020065 62020083 TTGCTCCTCTGGAGAACAG 59 NA DesignNoJunction Rattus norvegicus 81 Pla2g2a ENSRNOG00000016945 ENSRNOT00000022827 1 1 1 84 5 157284237 157284255 CTGGAGAAACGTGGATGTG 59 157284303 157284892 CCTGGTTTGTAGAGCAGGA 59 NA Rattus norvegicus 81 RGD1563307 ENSRNOG00000028984 ENSRNOT00000030832 2 1 1 60 1 89645973 89645992 ATGCTGACGACTTAGGAGAG 59 89645932 89645951 TAGTACTGCAAGGGATTTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Coro6 ENSRNOG00000014496 ENSRNOT00000019759,ENSRNOT00000086706 2 2 2 80 10 62694591 62694610 TGGGTCATATCTTCACCACG 60 62694134 62694549 GTTCTTCGAAGTTGTTCGGG 60 NA Rattus norvegicus 81 Gpr63 ENSRNOG00000007675 ENSRNOT00000010081 1 1 1 80 5 39329620 39329639 GATGCTTGTTAGTGCTGTGG 60 39329681 39368761 TCTGTTTGCTGTTTCCACAG 59 NA InUTR Rattus norvegicus 81 Slc38a10 ENSRNOG00000004604 ENSRNOT00000006225 1 1 1 80 10 109330283 109333548 TCAAACAGTGTGGCATTGTC 59 109330222 109330241 CCAAGAACATGCAAGACTGG 60 NA Rattus norvegicus 81 LOC100360557 ENSRNOG00000048805 ENSRNOT00000072158 1 1 2 61 1 212872547 212872571 GTCATTTATTCTCTGAGGAACAAGG 60 212872584 212872732 GGACATACAAATAACTTTCTGAGGG 60 NA DesignNoJunction Rattus norvegicus 81 Fndc1 ENSRNOG00000030210 ENSRNOT00000089458,ENSRNOT00000034842 2 2 2 80 1 47644894 47647592 AGAGTTGTTGCATCAAGACAG 59 47647633 47647652 GGAGACTTGCTTGTAATCCC 58 NA Rattus norvegicus 81 Hadha ENSRNOG00000024629 ENSRNOT00000038649 2 1 1 80 6 27603168 27603186 CAACGACCAAATCAGGAGC 59 27603230 27604060 GCCAGCATGTTGATGTCAG 60 NA Rattus norvegicus 81 Gpr142 ENSRNOG00000024446 ENSRNOT00000035963 1 1 1 126 10 103349223 103349241 CAATACGACAGTGTGGACG 59 103349331 103350865 TAGTCAGGACGTTGACAGG 59 NA Rattus norvegicus 81 Uba2-ps1 ENSRNOG00000052785 ENSRNOT00000091820 1 1 1 89 13 93884316 93884337 ACGACTTCCTGGACTACAC 59 93884390 93884408 GGGTGTCACCAACTACCTC 60 NA Rattus norvegicus 81 Uba2-ps1 ENSRNOG00000052785 ENSRNOT00000091820 3 1 1 97 13 93884245 93884265 AGAGACAGAAGCTAATAACCC 57 93884324 93884345 TCAGCAAAGTGTAGTCCAG 57 NA Rattus norvegicus 81 Mkx ENSRNOG00000018938 ENSRNOT00000025623 3 1 1 83 17 60541823 60548564 TAGTGCAGGTGTCAAATTGG 59 60548608 60548628 TTAAGGCCCAACTTAAATCCG 59 NA Rattus norvegicus 81 Krt71 ENSRNOG00000049495 ENSRNOT00000068533 3 1 1 82 7 143349774 143350184 CTGCTGAAGAAGGATGTGGA 60 143349711 143349729 TTGATGTCCTGGTCCATGG 59 NA Rattus norvegicus 81 Zfand2a ENSRNOG00000032917 ENSRNOT00000047634,ENSRNOT00000083814 3 2 2 80 12 17254616 17257977 GCATTCAAGAAGGATGTGC 57 17258021 17258039 ATCTGGGATGTCACCTCTC 58 NA Rattus norvegicus 81 Pm20d2 ENSRNOG00000007755 ENSRNOT00000060914 3 1 1 81 5 48427769 48427787 AAGAGCTCCACGTTCTGAC 60 48425434 48427727 TTAATTTCTACTGTGCAGCCTG 59 NA Rattus norvegicus 81 Dhtkd1 ENSRNOG00000023587 ENSRNOT00000065978 2 1 1 80 17 76336302 76336323 AGAATGGAACCAATCTTGACTG 59 76336362 76337627 GACGAACATTGAAACCTTGAG 58 NA Rattus norvegicus 81 Snrpf ENSRNOG00000005556 ENSRNOT00000007351 1 1 1 87 7 34483365 34483385 TGATGGTGAAACTTAAGTGGG 58 34479359 34483316 TCTGTATTTGCAAGCTGCA 58 NA Rattus norvegicus 81 Gorasp2 ENSRNOG00000055853 ENSRNOT00000088097 3 1 1 80 3 56982915 56983575 ATACCGTCATGAATGAGTCTG 58 56983615 56983635 TGTACACGTAGAGCTTAAGAG 57 NA Rattus norvegicus 81 Krt5 ENSRNOG00000050420 ENSRNOT00000011644,ENSRNOT00000083956 3 2 3 80 7 143323425 143323554 GTTGAAGAAGGATGTGGACG 59 143323364 143323383 TTGATCTCGTCCATTAGGGC 60 NA Rattus norvegicus 81 Ppp3r1 ENSRNOG00000043210 ENSRNOT00000067846 1 1 1 80 14 100356722 100357098 AAGTTGAGGTTCGCTTTCC 58 100357142 100357160 CTTCAACACCTGGAAGAGC 59 NA Rattus norvegicus 81 Il13ra2 ENSRNOG00000032973 ENSRNOT00000084465,ENSRNOT00000043338 1 2 2 80 X 118455764 118456313 GATAGCAGATGAAGGAAGCC 58 118455703 118455721 GAGCAGACCAAATACTGCC 59 NA Rattus norvegicus 81 Zc3h12b ENSRNOG00000011508 ENSRNOT00000076903,ENSRNOT00000081354 2 2 3 83 X 65068707 65068727 AAGGCCATAAAGACATCACTG 58 65068770 65070959 TATCTTGATCTGTAATCGGCG 58 NA Rattus norvegicus 81 Marcksl1 ENSRNOG00000009113 ENSRNOT00000012663 3 1 1 60 5 147715471 147715489 AGAAATCGGAAGGAGGGTG 59 147715513 147715531 CTTGCTCTTCCTCTGTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ceacam9 ENSRNOG00000046915 ENSRNOT00000071271 1 1 1 60 1 78659460 78659481 GGAGTCCTCTTCTCTACTTCTC 59 78659501 78661845 GCAGGTTAAGAAGGAAGCTG 59 NA DesignRelaxed Rattus norvegicus 81 Ceacam9 ENSRNOG00000046915 ENSRNOT00000071271 3 1 1 60 1 78659460 78659481 GGAGTCCTCTTCTCTACTTCTC 59 78659501 78661845 GCAGGTTAAGAAGGAAGCTG 59 NA DesignRelaxed Rattus norvegicus 81 Kif24 ENSRNOG00000012735 ENSRNOT00000035541 3 1 1 82 5 57797317 57797336 AAGATAGCAAGCATGTGGTG 59 57792827 57797274 TAAGATCACCTGTAGGAGGAG 58 NA Rattus norvegicus 81 Exoc6b ENSRNOG00000059615 ENSRNOT00000091490,ENSRNOT00000086297 2 2 2 80 4 116712254 116712273 CAGTGTCGACTACAACAGAG 58 116712088 116712213 ACTGTACATCTCTAGGACTGG 58 NA Rattus norvegicus 81 Potea ENSRNOG00000056767 ENSRNOT00000079671 1 1 4 80 14 85872089 85872108 GAGTTCCGGATATTGGAGGA 59 85872146 85873670 TAGTAGATTCTCTGAGACACTCTC 59 NA Rattus norvegicus 81 Potea ENSRNOG00000056767 ENSRNOT00000079671 3 1 4 81 14 85872087 85872105 GCGAGTTCCGGATATTGGA 60 85872146 85873669 AGTAGATTCTCTGAGACACTCTC 59 NA Rattus norvegicus 81 Potea ENSRNOG00000056767 ENSRNOT00000090532 3 1 4 80 14 85881936 85883266 GCTTCCCAAATACTCTGCA 58 85883310 85883328 TTCATCCTAAACGAGGCAG 57 NA Rattus norvegicus 81 Olr1244 ENSRNOG00000061646 ENSRNOT00000087099 2 1 1 60 4 1584362 1584385 TATGTAGGATGTATGACCCAACTC 60 1584403 1584422 CACAGCATTCACTAACAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccndbp1 ENSRNOG00000011379 ENSRNOT00000015472 2 1 1 81 3 112952410 112952428 GGATCTGTGAGCAAGTCCA 59 112952473 112954062 AGGGTGATTCCCTGATCCT 60 NA Rattus norvegicus 81 Defb23 ENSRNOG00000023477 ENSRNOT00000032030 2 1 1 88 3 147928626 147932366 GGTGGAATCAGAATTTATGGTGG 60 147928560 147928578 GTACCTGGGTTTCCTCAGG 59 NA Rattus norvegicus 81 Acsbg2 ENSRNOG00000045947 ENSRNOT00000074555 2 1 1 80 9 10197521 10197542 AGATCTATGGGATGACTGAGTG 59 10197581 10199342 CTTTGCCACAACTCAGAACTC 60 NA Rattus norvegicus 81 Acsbg2 ENSRNOG00000045947 ENSRNOT00000074555 3 1 1 80 9 10190393 10192952 ATGACAACATCACATGGACG 59 10192994 10193013 CTATCGTGTCCTGCTTTCCT 60 NA Rattus norvegicus 81 Rgs19 ENSRNOG00000016547 ENSRNOT00000022451 1 1 1 105 3 177197530 177197638 CTGTGAAGTCTGCACTCCA 60 177197443 177197461 GAATGCCCGGAATACACTG 59 NA Rattus norvegicus 81 Zer1 ENSRNOG00000025832 ENSRNOT00000035002 3 1 1 80 3 8665587 8666260 TGTCTACCCTGACAAGTACTG 59 8665527 8665548 GTAACCATCTTGATCAAGTCCC 59 NA Rattus norvegicus 81 Gnai1 ENSRNOG00000057096 ENSRNOT00000091004 2 1 1 80 4 13479437 13480987 GAAGAAATGAACCGGATGCA 59 13481029 13481048 GATGGATGTGTCCGTAAACC 59 NA Rattus norvegicus 81 Naa35 ENSRNOG00000018417 ENSRNOT00000025096,ENSRNOT00000090032 1 2 2 80 17 5439631 5439651 GACCTTCTTTCTGCCATTCAC 60 5436748 5439591 AATTGGATGGTCTCCTTTGGT 60 NA Rattus norvegicus 81 Procr ENSRNOG00000019330 ENSRNOT00000055254 2 1 1 80 3 151287562 151287581 TACCTGTCCCAGTTCAACAG 59 151287622 151288437 GCTAACAGTCAGAGGAAAGAC 59 NA Rattus norvegicus 81 Aak1 ENSRNOG00000018317 ENSRNOT00000043082 1 1 1 80 4 118788424 118788443 TTCTAACCCTACTGCTGACC 59 118788481 118790209 CTATCTTCTGCAGCTTTATGAGTG 60 NA Rattus norvegicus 81 Eya4 ENSRNOG00000016627 ENSRNOT00000022362 3 1 1 81 1 23600086 23602386 AGAACAATGTCGGAGGTCTC 60 23602429 23602448 TCTGTTAGGCCTTCGATCTC 59 NA Rattus norvegicus 81 Ddr2 ENSRNOG00000002881 ENSRNOT00000003901 1 1 1 80 13 88342783 88343093 GGAAACAGGTGCTTGATGG 59 88342721 88342742 CAAATCTAGCTACAATGGGTGG 59 NA Rattus norvegicus 81 Rpap3 ENSRNOG00000053405 ENSRNOT00000083926 1 1 1 80 7 139175986 139178339 GAGGCCAAGCAAGATTTCG 60 139175924 139175945 TTTAATTCTGGAAAGCTCGGTC 59 NA Rattus norvegicus 81 Vrtn ENSRNOG00000048378 ENSRNOT00000073962 3 1 1 195 6 108365106 108365126 CTAGCCTGTTACCTTCTACCT 58 108365319 108365337 CATTCAACAGGCTTCTGGC 60 NA DesignNoJunction Rattus norvegicus 81 Rpn2 ENSRNOG00000007492 ENSRNOT00000068135,ENSRNOT00000091273 1 2 2 80 3 153403191 153409420 CAGATGTCAAGAAAGCGTG 57 153409464 153409482 ATTGGGCAGCATAGAAGAG 57 NA Rattus norvegicus 81 Rpn2 ENSRNOG00000007492 ENSRNOT00000068135,ENSRNOT00000091273 3 2 2 80 3 153433082 153435044 CTCACCAGACATTTGTTCGAC 60 153435084 153435104 CATTCTTGTTATCCGGCTCAG 59 NA Rattus norvegicus 81 RGD1565512 ENSRNOG00000027392 ENSRNOT00000036178 1 1 1 80 3 3732873 3732891 GATCTCCAATGCGGAAGTG 59 3729460 3732830 ATAGACAGAAGCTGTCTGGA 58 NA Rattus norvegicus 81 RGD1562515 ENSRNOG00000024604 ENSRNOT00000007636 3 1 1 60 4 101393063 101393085 GGAACTTTATGACTGGCTTTACC 60 101393025 101393043 CCAATGGGAAACGAGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam76a ENSRNOG00000011254 ENSRNOT00000077360,ENSRNOT00000066549 1 2 2 80 5 151107320 151112101 GACGATCGAAAGAAGGTGG 58 151107258 151107276 TCTGGTCTTCTGAAGGACG 59 NA Rattus norvegicus 81 Mttp ENSRNOG00000010655 ENSRNOT00000014631 3 1 1 80 2 243387350 243387371 AGTCGGTTATGATCATCATTGG 58 243382807 243387309 CTTCAACCACTGCCTTGAG 59 NA Rattus norvegicus 81 LOC498339 ENSRNOG00000029004 ENSRNOT00000044855 3 1 1 82 14 20468891 20474556 TTTCGTCCCTATTCTCCCTC 59 20468828 20468846 CTTTGGAGCCATACACAGG 58 NA Rattus norvegicus 81 Abcd4 ENSRNOG00000011964 ENSRNOT00000016040 1 1 1 80 6 108327665 108327686 CTTTCCTTCTTGGTCATCACAG 59 108327484 108327625 TAGATCACCAGTTGCTCCAG 59 NA Rattus norvegicus 81 Abcd4 ENSRNOG00000011964 ENSRNOT00000016040 3 1 1 80 6 108318314 108318465 GAGCATGAAAGGCTCAGTG 59 108318252 108318270 GTGAAGAACGGCTTCTGAG 59 NA Rattus norvegicus 81 Olr40 ENSRNOG00000018541 ENSRNOT00000025003 3 1 1 84 1 167605480 167605498 TTTCTACCTGTTGCTTCCG 58 167605285 167605432 TAACCTTACCAGGTGCTGC 60 NA DesignNoJunction Rattus norvegicus 81 Mrpl28 ENSRNOG00000042720 ENSRNOT00000027662 3 1 1 81 10 15495904 15495922 AGTCCCAACAGGAACTGTG 60 15495966 15496722 ACCCTATTGGAGAGCTTGTC 59 NA Rattus norvegicus 81 Gng10 ENSRNOG00000025040 ENSRNOT00000020707 2 1 1 136 5 76182232 76185944 TGGAGAGGATCAAGGTCTC 58 76186044 76186062 AAGTAAAGCACAGGACCTG 57 NA Rattus norvegicus 81 Coq6 ENSRNOG00000011164 ENSRNOT00000014913 3 1 1 80 6 108084013 108084625 CAGACCAAGCTGTTGATTGG 60 108084668 108084686 GTTCCAGCCAACATTCTGG 59 NA Rattus norvegicus 81 Has3 ENSRNOG00000059362 ENSRNOT00000081116,ENSRNOT00000083515 3 2 2 82 19 39070889 39070907 CACCATTGAGATGCTTCGG 59 39070950 39071888 CGTATTTGTTGAGGATTTGGAC 58 NA Rattus norvegicus 81 Ift20 ENSRNOG00000008891 ENSRNOT00000011795 3 1 1 82 10 65807940 65807962 TACCTCCTGATTGACACTATCAC 60 65808004 65808147 ATGTCCTTGGCCATAGCTG 60 NA Rattus norvegicus 81 Lcat ENSRNOG00000019573 ENSRNOT00000026585 2 1 1 97 19 37915658 37915755 ATTGATAACACCAGGGTTGTC 58 37915581 37915599 GAGTAGGTCTTGCCAAAGC 59 NA Rattus norvegicus 81 Chst14 ENSRNOG00000045997 ENSRNOT00000073587 1 1 1 60 3 110735228 110735248 CCCAGAAAGTCTACATTACCA 57 110735270 110735288 TAGCACATCTTGAAGCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ei24 ENSRNOG00000030391 ENSRNOT00000046590 1 1 1 80 8 39257201 39257477 TCCTCCTACATTATCAGTGGC 59 39257141 39257160 AGGAGTCTTTGCTTCATTGG 58 NA Rattus norvegicus 81 RGD1309170 ENSRNOG00000024623 ENSRNOT00000045169,ENSRNOT00000089222 2 2 2 80 2 243453784 243453804 ATGAACACCAGAATCAACAGG 59 243452656 243453747 CTTCAACAGGATCTTTATCTCCTG 59 NA Rattus norvegicus 81 Dnase2 ENSRNOG00000023830 ENSRNOT00000014887 1 1 1 80 19 26024167 26024188 TGTAATTCTCACTTCTCGAGCT 59 26024229 26024970 CCGGAGTACAGGTCATCTC 59 NA Rattus norvegicus 81 Olr588 ENSRNOG00000005793 ENSRNOT00000007603 2 1 1 60 3 75937378 75937400 CCATTAATGAGTGGCTACTTTCC 60 75937417 75937438 ATGAAGAAACAGATGACCTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1304704 ENSRNOG00000000340 ENSRNOT00000049255,ENSRNOT00000092002 3 2 2 82 15 4891259 4893410 AATGAAAGAGGGCTTACCTG 58 4893570 4893590 GAGCAGCTTCATTAAGAACTG 57 NA Rattus norvegicus 81 Steap4 ENSRNOG00000008602 ENSRNOT00000048061,ENSRNOT00000011432,ENSRNOT00000089086 3 3 3 80 4 23118591 23118612 AAGGCATTTAACACCATCTCAG 59 23117928 23118552 ATTTCCACAGACAAACACCTG 59 NA Rattus norvegicus 81 Il13ra1 ENSRNOG00000013170 ENSRNOT00000017746 2 1 1 80 X 122755923 122760885 CTCTTTAGAGGTTGAAGAGGAC 58 122761197 122761218 GGAGATATGAAACAACTTGCAC 58 NA Rattus norvegicus 81 Mpnd ENSRNOG00000048282 ENSRNOT00000074075 3 1 1 80 9 11058645 11058930 TCCTCTTGGACTTCCACTG 59 11058583 11058603 TCTGATTATTGATGTCCCAGC 58 NA Rattus norvegicus 81 RGD1564865 ENSRNOG00000038361 ENSRNOT00000058413 2 1 1 80 17 69488589 69488608 CAGGCAGCTAGAGATGATCC 60 69488647 69489461 AGATAAGGGTGACATTCTACCTG 60 NA Rattus norvegicus 81 LOC100909752 ENSRNOG00000060381 ENSRNOT00000088385 3 1 1 80 5 62920909 62920929 GGATATCCCTCTGGAAATGGT 59 62921079 62923781 CCTTTGGGTCCCATAGGTC 60 NA Rattus norvegicus 81 Zfp358 ENSRNOG00000000974 ENSRNOT00000001289 3 1 1 239 12 2046498 2046516 CGAACTACAAGTCCCAGCA 60 2048782 2048800 ATCCTGGAAGTAGAACCGC 59 NA DesignNoJunction Rattus norvegicus 81 Pafah1b2 ENSRNOG00000057102 ENSRNOT00000082508 3 1 1 80 8 50260658 50264439 TTGTACTGGGTCTGTTACCTC 59 50260598 50260616 CCTTGAGAAGCTGGTTCAC 59 NA Rattus norvegicus 81 Sntg2 ENSRNOG00000004928 ENSRNOT00000066904 3 1 1 81 6 49254935 49254953 AAAGAGGTGCTGACGATCC 60 49218555 49254893 TTCTCAGAAGATGCACATTAGC 59 NA Rattus norvegicus 81 Eda2r ENSRNOG00000013018 ENSRNOT00000017429 3 1 1 80 X 66565594 66567132 TCTTCTGAGGTTCAGTGTACC 59 66565534 66565552 AAGTGTGGCTTCCTTAGGA 58 NA Rattus norvegicus 81 Katnal1 ENSRNOG00000000916 ENSRNOT00000001219 2 1 1 80 12 7253519 7253537 ATGACAAGGATCTGGTGGA 58 7253578 7253945 GATCTGCTATATCATCCCAGTG 58 NA Rattus norvegicus 81 Pex1 ENSRNOG00000025991 ENSRNOT00000038136 2 1 1 80 4 27668965 27670420 CTTTATTAGTATTCAGGGACCAGAG 59 27668909 27668930 CTGATGAAGACATCTCGAACAG 59 NA Rattus norvegicus 81 Nudcd3 ENSRNOG00000056148 ENSRNOT00000083191 1 1 1 104 14 86333275 86333293 TTTCTCTACCGCAAGACCG 60 86326735 86333209 TTTAAAGACCTGCAACACCAG 59 NA Rattus norvegicus 81 Mpp4 ENSRNOG00000010486 ENSRNOT00000014094,ENSRNOT00000038132 1 2 2 80 9 65921807 65922468 CATGTATGGACACAGGATGC 59 65921746 65921765 ACTGCAAGTACAGCATTCAC 59 NA Rattus norvegicus 81 LOC100361746 ENSRNOG00000028116 ENSRNOT00000038955 3 1 1 80 10 71489000 71489632 GGGATTTGGTAATAAGAGTTCCTC 59 71488943 71488963 TAGCTATCGTCTGATTTCGGA 59 NA Rattus norvegicus 81 Tp53i13 ENSRNOG00000022615 ENSRNOT00000010691 1 1 1 92 10 62651346 62653584 GAGACAAGGACAGGCTGAG 60 62653640 62653658 CACAAATGGGCCAAGACAG 59 NA Rattus norvegicus 81 Calcb ENSRNOG00000011074 ENSRNOT00000014764 2 1 1 82 1 184273108 184273126 TATGAACAGAAGGCCAGGA 58 184273172 184275125 GAAATGACACTGGAGGAGG 58 NA Rattus norvegicus 81 Rn60_13_0836.1 ENSRNOG00000051271 ENSRNOT00000076141 2 1 1 80 13 78619989 78620204 TCTGTCTGAGAACTCATTTGGT 60 78620245 78620263 TCCAGGAAATGCTTCCCAG 60 NA Rattus norvegicus 81 Tbc1d13 ENSRNOG00000015970 ENSRNOT00000021431 1 1 1 80 3 8713754 8713773 GGCATCACCTACAAGATGGA 60 8713816 8715028 CTGTTCTTGCAGCTTCAGG 59 NA Rattus norvegicus 81 Tbc1d13 ENSRNOG00000015970 ENSRNOT00000021431 2 1 1 80 3 8713818 8715030 TGAAGCTGCAAGAACAGAG 58 8715074 8715092 ACAAGAACTCCTGGGACAG 59 NA Rattus norvegicus 81 Tmem67 ENSRNOG00000016187 ENSRNOT00000021839 3 1 1 80 5 25705267 25705288 GATTATGTTTCAGCAACACAGG 58 25703349 25705226 TTGATGACATGCCAAGCTC 59 NA Rattus norvegicus 81 Gpbp1l1 ENSRNOG00000037595 ENSRNOT00000076094,ENSRNOT00000012263 1 2 2 80 5 135413322 135415564 ACAGTCAGCTAAGTCATCTACAG 60 135415598 135415622 CTTATTCCAAATCTACCTTCTCCAC 59 NA Rattus norvegicus 81 LOC100363800 ENSRNOG00000011104 ENSRNOT00000014904 2 1 1 99 5 169507809 169510110 TTTGAGCAGTTCCTCCAGG 60 169510173 169510191 CAGTGATCTTGCTCTTGCT 58 NA DesignNoJunction Rattus norvegicus 81 Thrsp ENSRNOG00000012404 ENSRNOT00000016540 1 1 1 80 1 162385144 162385162 GAGGTGACGCAGAAATACC 58 162381991 162385103 CTCTCGTGTAAAGTGATCTTCC 59 NA InUTR Rattus norvegicus 81 Snapc4 ENSRNOG00000018845 ENSRNOT00000068110,ENSRNOT00000061682 1 2 2 80 3 3819965 3820332 ATGTTAACTTTGAAGGAGCCC 59 3819905 3819926 TCTTATTGATGCTTGGATGCTC 59 NA Rattus norvegicus 81 Gpc2 ENSRNOG00000001367 ENSRNOT00000001849 3 1 1 81 12 19596817 19597526 CTCCGCCTACAGATAACCC 59 19596754 19596772 CGCTGACCACATTTCTTCC 59 NA Rattus norvegicus 81 Lair1 ENSRNOG00000027733 ENSRNOT00000036413 2 1 1 80 1 73867274 73867294 TTTCCTCCTTTGTCTTTCCCT 59 73867332 73867448 CTCTTATTGTTTGGAAGTCCCTG 60 NA Rattus norvegicus 81 Zmiz2 ENSRNOG00000025923 ENSRNOT00000052002 2 1 1 80 14 86527425 86527701 TATTCAGAACTCAGACTACGAGG 59 86527741 86527759 TGTAGGTCAGGCTTCACAG 59 NA Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000076004,ENSRNOT00000076246,ENSRNOT00000076993,ENSRNOT00000004972 3 4 5 82 X 71311062 71311526 CTCCACTGAGAGCATTCCA 59 71310998 71311016 GGAATGGCACAAAGTCCTC 59 NA Rattus norvegicus 81 Alkbh8 ENSRNOG00000024525 ENSRNOT00000084222,ENSRNOT00000003432 1 2 2 80 6 18900541 18900561 AATTCCTGCCCATATTGACTC 58 18900603 18912486 TCCATAACAATCGCTGACC 58 NA Rattus norvegicus 81 Pmch ENSRNOG00000004632 ENSRNOT00000006174 2 1 1 83 7 28655438 28655456 TTGCTCCTTCTCTGGAAGG 59 28655503 28655841 AGCCTGTGTTCTTTGTGGT 60 NA Rattus norvegicus 81 Tspan4 ENSRNOG00000029810 ENSRNOT00000049448 3 1 1 80 1 214470358 214471390 CCTACTGCTCACTTTCTTTGTG 60 214471430 214471449 CTGTAGGCAAAGAAGAGCAC 59 NA Rattus norvegicus 81 Olr259 ENSRNOG00000009791 ENSRNOT00000012974 2 1 1 60 1 172567733 172567753 ATCATCCTGTGCATTTACCTG 59 172567693 172567715 TGATGAGAAGGATTGTACTGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr259 ENSRNOG00000009791 ENSRNOT00000012974 3 1 1 60 1 172567439 172567460 TAACCCACTGCTTTATTCAACC 59 172567400 172567421 TCCTACAATCAACTGCATACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr279 ENSRNOG00000046162 ENSRNOT00000047040 1 1 1 60 1 172942969 172942993 GTTGAACCCTATCATTTATAGCCTC 60 172942933 172942952 CTGTCTCTTCATAGCACCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dzip1-ps1 ENSRNOG00000046611 ENSRNOT00000072327 3 1 1 60 14 21877798 21877819 CAGAAGTTAGTGGTTAGTTGGG 59 21877759 21877777 TCTCCATCTCGTTCACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp383 ENSRNOG00000046305 ENSRNOT00000072556 1 1 1 97 1 88207031 88212239 AACATAAGAAACAGGTGGCG 59 88212299 88212317 ATCTTTGTACAGGGCCCTC 59 NA Rattus norvegicus 81 Spire1 ENSRNOG00000025324 ENSRNOT00000066103,ENSRNOT00000089408 2 2 2 80 18 63242252 63242271 TCCATTGAGAAGGAAACTCC 57 63240154 63242210 CCTAGGAACAAGAGAACGTG 58 NA Rattus norvegicus 81 Ap2s1 ENSRNOG00000015865 ENSRNOT00000021310 1 1 1 80 1 78676248 78676266 AAGTTGATCGAGGAAGTGC 58 78676310 78681276 CTTGAAGTTCCGGAACTCC 58 NA Rattus norvegicus 81 Ush1c ENSRNOG00000021149 ENSRNOT00000067392 2 1 1 80 1 102237901 102238028 ATCAAAGTGAGACACATCGG 58 102237672 102237691 GAACTGATCCACATACTGCC 59 NA Rattus norvegicus 81 LOC100911750 ENSRNOG00000020110 ENSRNOT00000027233 1 1 1 70 1 220417142 220417403 TTCAATCGAATCAGCCAGG 58 220417437 220417455 AAACCTTCGTTCAGCACCT 60 NA DesignNoJunction Rattus norvegicus 81 Pde6a ENSRNOG00000017816 ENSRNOT00000024171 3 1 1 80 18 56611371 56611389 AACAAGGCAGATGAACTCC 58 56611431 56613173 CCGGGAGAATTCCTTATAGAC 58 NA Rattus norvegicus 81 Pikfyve ENSRNOG00000015158 ENSRNOT00000020447 3 1 1 80 9 71982408 71991276 CCATTCCATTTCCTTTCGATCC 60 71991315 71991335 CTTTCTCACAGACAGCAATGG 60 NA Rattus norvegicus 81 Dapk2 ENSRNOG00000017332 ENSRNOT00000089147,ENSRNOT00000023372 2 2 2 80 8 71919303 71923102 TCATCACCTACATCCTTCTAAGTG 60 71923141 71923159 CAGCAGTGATGTTTGCCAG 60 NA Rattus norvegicus 81 Pik3r2 ENSRNOG00000019228 ENSRNOT00000026210 3 1 1 80 16 20422614 20422715 AAGTACCAGCAAGACCAGG 59 20422759 20422777 GTACTGCTGGTGGTAGACC 60 NA Rattus norvegicus 81 Aldh6a1 ENSRNOG00000011419 ENSRNOT00000015545 1 1 1 82 6 108152063 108152276 GTCAATGCAGGAGATCAGC 59 108151999 108152019 TCAATCAGATTGCAGACTCTC 58 NA Rattus norvegicus 81 Sf3b4 ENSRNOG00000021181 ENSRNOT00000028758 1 1 1 88 2 198313128 198313146 ATGGGAGCTCTTTCTCCAG 59 198313198 198313660 CAAAGCCATAGCCTTGGTG 59 NA Rattus norvegicus 81 Cldn1 ENSRNOG00000001926 ENSRNOT00000002640 1 1 1 80 11 77815610 77823966 TCTGAATAGTACTTTGCAGGC 58 77824008 77824026 GTGGACACAAAGATTGCGA 59 NA Rattus norvegicus 81 Fgd6 ENSRNOG00000054515 ENSRNOT00000077666 3 1 1 80 7 35056889 35058973 GCTGCAGAAACTAGATCACC 59 35059013 35059034 GAAGATAAGGCACTTGAAGGAG 59 NA Rattus norvegicus 81 Mrpl43 ENSRNOG00000014890 ENSRNOT00000020020 2 1 1 155 1 264755900 264756030 TGGCCGAATACCTTAACGG 60 264755763 264755781 CCTGGATGCTAGGGTTGTC 60 NA Rattus norvegicus 81 Cd200r1l ENSRNOG00000002046 ENSRNOT00000043917 3 1 2 80 11 60809831 60810594 CTATGCCAGAAGTTAACACTACAG 59 60809774 60809794 TTGTCAGTGGACTAGAAGGAC 59 NA Rattus norvegicus 81 Mpv17l2 ENSRNOG00000019394 ENSRNOT00000026271 1 1 1 80 16 20434379 20434545 ACTTCTACAAGGCCGACTG 59 20434588 20434607 TGACTCGGAAATGAGAAGGG 60 NA Rattus norvegicus 81 Trim39 ENSRNOG00000000785 ENSRNOT00000077291 1 1 4 60 20 2501335 2502702 GAAGCCATTCCATCTGCAC 59 2502724 2502744 CTTGGAGAAGACGTTACTGTC 59 NA DesignNoJunction Rattus norvegicus 81 Lurap1l ENSRNOG00000033740 ENSRNOT00000041374 2 1 1 81 5 98469441 98514393 CAGGAGATGGTGAACCTCAG 60 98514437 98514455 TGATGGACTCGATGCTCTC 59 NA Rattus norvegicus 81 Snx31 ENSRNOG00000025501 ENSRNOT00000036852 2 1 1 80 7 75328480 75333674 TCACTTCCCTTGGAACTCTG 59 75328419 75328441 TGTACTGAAATCTCAGCTCTAGG 60 NA Rattus norvegicus 81 Drd5 ENSRNOG00000005338 ENSRNOT00000007074 3 1 1 60 14 77220976 77220995 ATATTCGTCTGGTTTGGCTG 58 77220935 77220956 CATTAAAGGCATAGATGATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Perm1 ENSRNOG00000020244 ENSRNOT00000027476 1 1 1 106 5 173640823 173641569 AGAACCAGGACTGTGACAG 59 173641633 173641657 CCAGATTCTACTTCATTCTTCTGAG 59 NA InUTR Rattus norvegicus 81 Dse ENSRNOG00000000824 ENSRNOT00000088287,ENSRNOT00000001093 3 2 2 80 20 27718060 27720735 TGATGAACCAAGGGTACCT 58 27717998 27718016 GCAAGACCAGAGACTTCTC 58 NA Rattus norvegicus 81 Psapl1 ENSRNOG00000006845 ENSRNOT00000009193 1 1 1 60 14 79713580 79713599 CTGTCCAGAATCAGTGTCAG 58 79713539 79713557 ACATAGTTCTCGCAGAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1310852 ENSRNOG00000006370 ENSRNOT00000090270,ENSRNOT00000008382 3 2 2 91 7 97899360 97899378 AAGGGATGTCCAAGAAGGC 60 97897456 97899305 CTTTGCTTTCCAGGTCCAC 59 NA Rattus norvegicus 81 Slc38a1 ENSRNOG00000005291 ENSRNOT00000008138,ENSRNOT00000089806 2 2 2 80 7 137982436 137983663 ACCTTCAACTCAAAGACGG 58 137982374 137982392 GTAGATTGGCAGGACAGAC 58 NA Rattus norvegicus 81 Arhgap42 ENSRNOG00000026821 ENSRNOT00000031492 2 1 1 80 8 7245731 7245751 TGTACTTACGACAAAGGAAGC 58 7243701 7245690 AACAAGGCCATTCATCTTCC 59 NA Rattus norvegicus 81 Rhox5 ENSRNOG00000046548 ENSRNOT00000071376 2 1 1 80 X 123913098 123913116 TATCAGCCGCTTACTCTGC 60 123913160 123913330 TCTGCTTTCACATCACCCA 59 NA Rattus norvegicus 81 Kbtbd2 ENSRNOG00000013809 ENSRNOT00000018442 3 1 1 80 4 87100034 87100054 AGTGTTAATTGTTGAGGGCAC 59 87092959 87099993 AACATGGCCCTGAAATAGGA 59 NA Rattus norvegicus 81 Olr343 ENSRNOG00000029027 ENSRNOT00000049665 1 1 1 60 1 229804511 229804534 TGTCTTCCTTCTCATCTATCTCAG 59 229804474 229804493 AATCAACCCTACCATTCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ebna1bp2 ENSRNOG00000045760 ENSRNOT00000072245,ENSRNOT00000076672 1 2 2 80 5 137670822 137671379 AAATGAGTTTCTACCGCCAG 58 137671422 137671440 TCTTCGTAGGGACTTGGAG 58 NA Rattus norvegicus 81 Ebna1bp2 ENSRNOG00000045760 ENSRNOT00000072245,ENSRNOT00000076672 3 2 2 80 5 137672721 137672741 AACTGAGGTCCTTCAGAAGAG 59 137672783 137673034 TCAGAGAAGCCTTTCTGGT 58 NA Rattus norvegicus 81 Klk1c9 ENSRNOG00000032857 ENSRNOT00000081095,ENSRNOT00000025723 2 2 5 84 1 100088388 100088408 TCATTGGTACAACTTTCTGCG 59 100088449 100089332 CGATAATTCTTGCTATAGCAGTGG 60 NA Rattus norvegicus 81 Dcx ENSRNOG00000047712 ENSRNOT00000074322 1 1 1 80 X 115122224 115122243 TGATGTGTTCATTGCTTGTG 57 115120842 115122183 ACTCTGCATTCATTCTCATCC 58 NA Rattus norvegicus 81 Zbbx ENSRNOG00000009792 ENSRNOT00000081423,ENSRNOT00000013111 1 2 2 80 2 173472403 173475439 GAGATAACATCCACAGTTTCAG 57 173472344 173472362 GACATCGGTATTACCAGCA 57 NA Rattus norvegicus 81 Stxbp2 ENSRNOG00000000994 ENSRNOT00000001322 2 1 1 80 12 2182125 2182144 GAAGACATCAACAAACGGAG 57 2182187 2182972 CTGAACCGACTTCTCTGTG 58 NA Rattus norvegicus 81 Tmem51 ENSRNOG00000014197 ENSRNOT00000089981,ENSRNOT00000019171 3 2 2 149 5 160571604 160575267 GAAGACAGCCAGGAAGAGG 60 160571473 160571493 AGTTAGCGATTCATAGGAGGG 59 NA Rattus norvegicus 81 Prok2 ENSRNOG00000010898 ENSRNOT00000015058 2 1 2 80 4 132157655 132160025 GAGGAAGAAGGAGGTTCCA 58 132157593 132157613 GTCCTTAAACATGCCAAACCT 59 NA Rattus norvegicus 81 RGD1563334 ENSRNOG00000050089 ENSRNOT00000071779 1 1 1 88 5 162599652 162599670 CCAAGACAACCTCCTCTGG 60 162597219 162599601 GTTGTGGTAACAATCCAGGC 60 NA Rattus norvegicus 81 Casc1 ENSRNOG00000027630 ENSRNOT00000030680 2 1 1 80 4 179463522 179463541 TTAGCTTGTGGGAGGAAGAG 59 179461398 179463481 TTTCAATCAGGGACAGAACCA 60 NA Rattus norvegicus 81 Ccni ENSRNOG00000002125 ENSRNOT00000002924 3 1 1 80 14 16345483 16345501 GTTGGAAAGGGCAATCTCC 59 16345541 16356467 GGAGAAACATTCTGGTTTGTAGG 60 NA Rattus norvegicus 81 Spink7 ENSRNOG00000032873 ENSRNOT00000040936 2 1 1 82 18 57918184 57918202 AAACATCCCAGTTTGTGGA 57 57916690 57918141 TCCCATTACTTCTCAAGATCTC 57 NA Rattus norvegicus 81 Rfpl4a ENSRNOG00000015743 ENSRNOT00000021077 2 1 1 96 1 72280367 72281628 GACTAAATGAGGCACTGACC 58 72281687 72281705 CAGTTCAGGTACACAGGGT 59 NA InUTR Rattus norvegicus 81 Selenbp1 ENSRNOG00000053812 ENSRNOT00000088465 1 1 1 80 2 196107516 196107534 AGTGGAGAAGGTGATCCAG 58 196107356 196107472 ATGTCGGTGATCAAACCAG 58 NA Rattus norvegicus 81 LOC367975 ENSRNOG00000047100 ENSRNOT00000071436 1 1 1 80 X 124158480 124158498 ACCTTACACTCTTGTGCCA 59 124157652 124158436 TCATGGTGGCAATTGTTGG 59 NA InUTR Rattus norvegicus 81 Puf60 ENSRNOG00000009960 ENSRNOT00000056481,ENSRNOT00000013353 1 2 2 80 7 117130846 117130865 GATCAAGTCTTGTACGCTGG 59 117130702 117130803 TGGGCCTTCTCATATTCGA 58 NA Rattus norvegicus 81 Cdkn3 ENSRNOG00000009785 ENSRNOT00000012985 3 1 1 81 15 23561893 23562795 GATCTTGTCTTGTAGCTGCT 58 23562839 23562857 TCTCGAAGGCTGTCTATGG 59 NA Rattus norvegicus 81 Ccdc121 ENSRNOG00000022717 ENSRNOT00000036629 3 1 1 60 13 99820871 99820890 AAACGGGTAAAGAGGAAGAC 58 99820830 99820849 TTTCTTGGATTTGCTGGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arl13a ENSRNOG00000055454 ENSRNOT00000085068 3 1 1 80 X 105025712 105025732 TATGAGCAACATCTCAAGCTC 58 105025772 105035141 ACTCCTCTGGTAGATAAGCTG 59 NA Rattus norvegicus 81 Npas4 ENSRNOG00000020009 ENSRNOT00000027119 2 1 1 80 1 220264742 220264760 CTTGTGTTCACAGCTGAGG 59 220264507 220264699 CAGATCCACCATAGAATGGC 58 NA Rattus norvegicus 81 Cgrrf1 ENSRNOG00000010178 ENSRNOT00000013912 2 1 1 80 15 23627864 23627885 AATGAGACAAGTGAAGAATCCG 59 23627925 23633042 GTCAAGGTTACACCTGTTGC 60 NA Rattus norvegicus 81 Fga ENSRNOG00000024848 ENSRNOT00000064091 1 1 1 80 2 182010316 182010335 GCAACAGATTCAGGTTCTGC 60 182010375 182011039 TTGATATCAATGTCCACCTCCA 59 NA Rattus norvegicus 81 LOC100912534 ENSRNOG00000001748 ENSRNOT00000002382 1 1 1 80 11 82859834 82859937 AGACTTAGGTGACAAGTTCCG 60 82859774 82859794 GGGTTGTATTCACCATCATCC 59 NA Rattus norvegicus 81 Sntn ENSRNOG00000027383 ENSRNOT00000039347 2 1 1 60 15 14501956 14501976 CCAAGAATCTGCTTCAAACCC 60 14498631 14498649 TTTGGCTTGGTTTCCTCTC 58 NA DesignNoJunction Rattus norvegicus 81 Dnajb9 ENSRNOG00000004006 ENSRNOT00000005363 1 1 1 85 6 64168229 64168247 TAGCCATGAAGTACCACCC 59 64167431 64168183 GAGTGTTTCATATGCTTCTGCA 59 NA Rattus norvegicus 81 Aco2 ENSRNOG00000024128 ENSRNOT00000076823,ENSRNOT00000038612,ENSRNOT00000076602 1 3 3 88 7 123134431 123134449 TCCTCACAGTGAAAGGTGG 59 123134501 123135291 AATTGTTGCCATGCCAGTG 60 NA Rattus norvegicus 81 Olr537 ENSRNOG00000034047 ENSRNOT00000047002 1 1 1 60 3 74606834 74606855 TTGGATTTCTCCTACTCATCAG 57 74606795 74606816 GCCCTACCAAGTAGTTTATCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fh ENSRNOG00000003653 ENSRNOT00000004917 3 1 1 80 13 93669831 93669852 AAGTATTATGGTGCTCAGACTG 58 93667095 93669790 GACTGGGATTGGCATTCTC 58 NA Rattus norvegicus 81 Kctd6 ENSRNOG00000007817 ENSRNOT00000010303 3 1 1 80 15 18485946 18487950 CTGGAGCTATATGATGACTGAC 58 18485887 18485905 CGTGTCAACGTGGTAAGAG 59 NA Rattus norvegicus 81 Rn60_X_0735.2 ENSRNOG00000051269 ENSRNOT00000076628 1 1 1 60 X 72611638 72611658 AGAAACAGAAAGTAAAGGCCG 59 72611680 72611698 CCTTGGGCATGAACTTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912455 ENSRNOG00000050854 ENSRNOT00000071707,ENSRNOT00000073435 3 2 2 80 11 82871941 82875453 TTCTTTGCACAAGACCCAC 59 82875497 82875515 CCAATGAGTCTGCCAATGC 60 NA Rattus norvegicus 81 Prss32 ENSRNOG00000029223 ENSRNOT00000071525 1 1 1 80 10 13197684 13199131 CCACTGCTTTAACCAGGAC 59 13199175 13199193 TCATTGTCCTCAGGGTAGG 58 NA Rattus norvegicus 81 Rxfp1 ENSRNOG00000024120 ENSRNOT00000033107 3 1 1 80 2 178479361 178520027 GGACGATATTTCACACTTGGA 58 178479301 178479319 GCACTTACTGATGTTCCCG 59 NA Rattus norvegicus 81 Fbxo6 ENSRNOG00000009217 ENSRNOT00000012301 1 1 1 80 5 164959609 164959633 ACTGGAAGATCTTCTATATCCTGTG 60 164957651 164959573 ATGATCTCAGGTTCTCTTCGG 59 NA Rattus norvegicus 81 Map3k7 ENSRNOG00000005724 ENSRNOT00000007654 2 1 1 80 5 47203024 47204548 GTTGTATAATGTGCTGCACG 58 47204591 47204609 GAACACTGTAGACACCAGC 58 NA Rattus norvegicus 81 Tp53bp1 ENSRNOG00000013837 ENSRNOT00000019025 3 1 1 80 3 113230578 113230866 CCCGGTGTTGGATATTATGTC 59 113230518 113230538 AGATGTTCACTGAATGAGCTG 59 NA Rattus norvegicus 81 RT1-T18 ENSRNOG00000030666 ENSRNOT00000061395,ENSRNOT00000088029,ENSRNOT00000080406 2 3 4 81 20 3121981 3122000 GTGCTATGGCCATCTTAGGT 60 3122041 3122417 TCATAATCTCTGTCTCCTCCCT 60 NA Rattus norvegicus 81 Olr551 ENSRNOG00000050825 ENSRNOT00000049273 1 1 1 60 3 74990483 74990501 TTGCCATCCTGAGAATCCG 60 74990441 74990459 GAGGCACAAGTTGAGAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il19 ENSRNOG00000025571 ENSRNOT00000035044 2 1 1 80 13 47666910 47670090 GAGCATTAAGCCTGTAGATGTG 59 47666851 47666869 TGATGGTCCTTGAACACCC 60 NA Rattus norvegicus 81 Acox2 ENSRNOG00000007378 ENSRNOT00000010260 2 1 1 80 15 18452274 18452292 CCATCTCGAGAAGCTAGCC 60 18452334 18452545 CCATCAAGGACTCTGTTAGCA 60 NA Rattus norvegicus 81 Anxa3 ENSRNOG00000002045 ENSRNOT00000068134 1 1 2 80 14 14382871 14382889 TTGACCTTCTGGACATCCG 59 14374249 14382830 CAGAAGTATCTGATTGGATGGC 59 NA Rattus norvegicus 81 Pcsk1 ENSRNOG00000011107 ENSRNOT00000015185 2 1 1 80 2 91485157 91493635 ATGATGATCGTGTGATATGGG 58 91485097 91485115 TCAATGCTGAGTCTCTTGG 57 NA Rattus norvegicus 81 Mapk3 ENSRNOG00000053583 ENSRNOT00000087625 1 1 1 80 1 198197426 198197444 TACCTACAGTCTCTGCCCT 59 198197488 198197663 CAGGTCAAGAGCTTTGGAG 58 NA Rattus norvegicus 81 Vom1r81 ENSRNOG00000048807 ENSRNOT00000044913 2 1 1 60 4 88048579 88048597 ATCAGTCCCAGTACCTCAC 58 88048619 88048639 AAGTCAGGTACGTCTTCAGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krt85 ENSRNOG00000008436 ENSRNOT00000011374,ENSRNOT00000088017 3 2 2 80 7 143163542 143163561 CAAGGCTCAGTATGATGACG 59 143163283 143163500 TTCATCTCCTCACACTTGGT 59 NA Rattus norvegicus 81 Fkbp14 ENSRNOG00000009886 ENSRNOT00000013205 2 1 1 80 4 84767985 84768003 GGATCTGATGTTGGTCCAC 58 84764851 84767944 CCATTGTTATGTTTGTGAGTGG 58 NA Rattus norvegicus 81 Olr1579 ENSRNOG00000049212 ENSRNOT00000045429 1 1 1 60 13 91638592 91638611 CTCCAATTTCCAAGAGCACC 59 91638551 91638574 CAGGATGTATAGGGTAAAGAAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021930.1 ENSRNOG00000037928 ENSRNOT00000029787 3 1 1 80 13 99346047 99346066 TAGAGAAGTTCTCCACCTGG 58 99346109 99346229 GTTCCTCTGTTTCCAGGGA 59 NA Rattus norvegicus 81 Scnn1b ENSRNOG00000030981 ENSRNOT00000067138 2 1 1 80 1 191875849 191875869 AACTGCTACATCTTCAACTGG 58 191875908 191877622 CAACTTGAGACCAAATTCAGTC 58 NA Rattus norvegicus 81 Prkd2 ENSRNOG00000016434 ENSRNOT00000022360 3 1 1 80 1 78775810 78775910 GCTCATCAATGGAGATGTGC 60 78775952 78775971 TCCAACTCATCTGAGAGGGA 60 NA Rattus norvegicus 81 Plg ENSRNOG00000017223 ENSRNOT00000023368,ENSRNOT00000080352 1 2 2 80 1 48552172 48553749 CCCACGTACCCAAATACTC 58 48552110 48552128 CATCATTGTCTGGGTTCCT 57 NA Rattus norvegicus 81 Tifa ENSRNOG00000010941 ENSRNOT00000083193,ENSRNOT00000014533 3 2 2 65 2 232129926 232135437 CACTGGAAGACTCTCAGGC 60 232135466 232135484 CGTCTCTTCTGTATCAGCG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Szrd1 ENSRNOG00000009183 ENSRNOT00000045226 3 1 1 100 5 159643874 159645428 AAAGGAGAGCAGGAAATCCA 59 159643793 159643811 TCTTGAGGATGCGGATCTG 59 NA Rattus norvegicus 81 AABR07002775.1 ENSRNOG00000048489 ENSRNOT00000072734 2 1 1 60 1 84758979 84758997 TGAATGTAAGCAGTGTGGG 58 84759020 84759039 ATCGTAGTGTCGTAAGAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nono ENSRNOG00000003689 ENSRNOT00000004911 1 1 1 80 X 71337247 71338079 GAGGCAGGATTTGATGAGAC 59 71338122 71338140 TGCTTTCGTTTCTGAACCT 58 NA Rattus norvegicus 81 AABR07062108.1 ENSRNOG00000031180 ENSRNOT00000050332 3 1 1 60 4 161277719 161277739 GTACAGCTTAACTTCACAGGA 58 161277679 161277697 GAACATTCCACAGTCGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc5a8 ENSRNOG00000006367 ENSRNOT00000008613 3 1 1 80 7 29455385 29455405 CTGTACTCCAGATACCATGAC 57 29455445 29457462 CACCAAATAAGGCATAAGCTG 58 NA Rattus norvegicus 81 Olr577 ENSRNOG00000021658 ENSRNOT00000033519 3 1 1 60 3 75733747 75733766 TGTGACATCTGCTACTCCTC 59 75733706 75733727 CTTTAGACAAGAAATCAGCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Actr8 ENSRNOG00000015280 ENSRNOT00000020750 1 1 1 80 16 6052080 6053193 CTAAGGGAAGGACTAAATAAACCTG 59 6053231 6053249 AGACCATATTGCCTGGTCC 59 NA Rattus norvegicus 81 Wdr12 ENSRNOG00000017340 ENSRNOT00000023463 1 1 1 80 9 66864622 66864640 ATTTCCTCATCAAGGGCCA 59 66862980 66864581 CAACCTCTTCCGATGAAATGTC 60 NA Rattus norvegicus 81 Tfpi2 ENSRNOG00000010513 ENSRNOT00000013989 3 1 1 80 4 28952676 28952694 TGAGACTGTGGAATCTGCC 59 28952392 28952634 CTAAGTTATTCCCTTGGGCAG 59 NA Rattus norvegicus 81 Mir196b ENSRNOG00000049258 ENSRNOT00000071717 3 1 1 60 4 82199105 82199124 AGGTAGTTTCCTGTTGTTGG 58 82199064 82199083 GTAATGAAGGCAGTGTCGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cog7 ENSRNOG00000060008 ENSRNOT00000080534,ENSRNOT00000077869 2 2 2 80 1 191917425 191917443 AGATGTGCCAAATTCACCA 58 191911850 191917384 AGACACATACTTGGTAAAGAGG 58 NA Rattus norvegicus 81 Olr542 ENSRNOG00000050876 ENSRNOT00000046167 3 1 1 60 3 75088444 75088465 GGTCTTCTCTGGTATAATTGCT 58 75088405 75088425 GTGGCTATAGGATACCATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pkd1 ENSRNOG00000010771 ENSRNOT00000015092 2 1 1 80 10 13931242 13931260 GTCCCACAACCTACTTCAG 58 13931302 13931436 TTATTGCTTAAGTCCAGCTCC 58 NA Rattus norvegicus 81 Shroom3 ENSRNOG00000002208 ENSRNOT00000003001 2 1 1 81 14 16623941 16625553 GAAGAAAGGAGTTCTCTGAATGAG 59 16623883 16623901 CCAGGTTCTCCTTGAGCTC 60 NA Rattus norvegicus 81 LOC690082 ENSRNOG00000047724 ENSRNOT00000023181 3 1 1 113 1 146968006 146968024 AGTAACATCCAAGCCCAGG 59 146967827 146967845 TTGGGTGAGACAGAGATGC 59 NA DesignNoJunction Rattus norvegicus 81 Coro1a ENSRNOG00000019430 ENSRNOT00000026496 3 1 1 80 1 198125531 198125643 TGTTGTGGCTGAGAAGGAG 60 198125469 198125491 GTTAGAATCTTCCCTTCTGACAC 59 NA Rattus norvegicus 81 Zfp692 ENSRNOG00000002682 ENSRNOT00000038123,ENSRNOT00000078662 2 2 2 81 10 43749039 43751495 GAAACTACACAGCGATGCC 59 43751540 43751558 GTGGATGACAAGGTTGCTG 59 NA Rattus norvegicus 81 Rn60_5_1638.1 ENSRNOG00000054155 ENSRNOT00000087949,ENSRNOT00000086800 1 2 2 60 5 159981815 159981833 CTCAAGAACCAACCAGGGA 59 159981773 159981794 CCCACAGAACATAACAAAGGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdgfrb ENSRNOG00000018461 ENSRNOT00000068535,ENSRNOT00000086033,ENSRNOT00000078764 1 3 3 80 18 56400019 56400267 CTTGGCCTCTAAGAACTGTG 58 56400309 56400328 CAGATCTTGACCAACTTGCC 59 NA Rattus norvegicus 81 Tprkb ENSRNOG00000050645 ENSRNOT00000078239,ENSRNOT00000074924 3 2 2 104 4 117597678 117600448 AATGCCAATGTGATTGTCG 57 117600513 117600534 TTCAGTAGACAGAGTTCTTGTC 58 NA Rattus norvegicus 81 Rn60_5_1641.1 ENSRNOG00000051225 ENSRNOT00000076898 3 1 1 60 5 160288735 160288755 CTCTATGTCAAGCAGCATCAC 59 160288777 160288795 GTGAGATGGATTCTGGACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tlr12 ENSRNOG00000042455 ENSRNOT00000065640 3 1 1 100 5 146792335 146792702 GAGGAGGAAAGAAAGGTGGA 59 146792254 146792272 TTAGGAAAGCCTTCCCTCC 59 NA Rattus norvegicus 81 RT1-S2 ENSRNOG00000029001 ENSRNOT00000042882 3 1 1 82 20 3156438 3156588 GAGATGGGAGTCTCCTCCA 60 3156633 3156652 CTATGATGGTCACAGCTCCA 59 NA Rattus norvegicus 81 Plekhg3 ENSRNOG00000006570 ENSRNOT00000008573 2 1 1 80 6 99641564 99641582 AGCTTCTCAGAGACCTGGA 60 99641625 99641891 CAAACTCTTGGCTCCTTTCC 59 NA Rattus norvegicus 81 Megf11 ENSRNOG00000010634 ENSRNOT00000050649,ENSRNOT00000037941,ENSRNOT00000058007,ENSRNOT00000082401 2 4 4 80 8 70136627 70156900 AGGATTCATGGGAGAGGTG 59 70156939 70156962 CTACAGCTACATACAGATGAACAG 59 NA Rattus norvegicus 81 Pan2 ENSRNOG00000032441 ENSRNOT00000050792 1 1 1 80 7 2733032 2733147 TCTTAATGAGGAAGAAGCAGAG 58 2733187 2733206 ATCCTTGCTACTGACATCTG 57 NA Rattus norvegicus 81 Olr558 ENSRNOG00000048361 ENSRNOT00000071725 2 1 1 60 3 75379793 75379811 GTGATGTCCTATGACCGCT 59 75379832 75379853 TCATAACCAGAGGATAATGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Calm3 ENSRNOG00000016770 ENSRNOT00000022603 1 1 1 81 1 78845100 78845119 ATGGCCAGAAAGATGAAGGA 59 78844900 78845056 AGCCATTCCCATCCTTGTC 60 NA Rattus norvegicus 81 Mir7a-2 ENSRNOG00000035477 ENSRNOT00000053600 2 1 1 82 1 140576407 140576426 CCCTGTCTGGAAGACTAGTG 59 140576470 140576489 GATGTGACCAACACCATGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rcl1 ENSRNOG00000015491 ENSRNOT00000020809,ENSRNOT00000048910,ENSRNOT00000083511 2 3 3 80 1 247257808 247260251 CGTCAATTCTGGGAAGTCTC 58 247260294 247260312 AGTTCAGCACTCAGGAAGG 59 NA Rattus norvegicus 81 Zfp68 ENSRNOG00000001317 ENSRNOT00000001784,ENSRNOT00000079221 1 2 2 80 12 18161176 18161196 CTGAGCTGATCTTCAATTTGG 57 18161238 18163389 TTTGGAAATCTGGGATGCT 57 NA Rattus norvegicus 81 Scnm1 ENSRNOG00000021092 ENSRNOT00000028639 3 1 1 83 2 196300571 196300864 CTTACCCTCCGAAGCTCTG 60 196300506 196300527 CTCATCAGAGTCAAACTCAACG 60 NA Rattus norvegicus 81 LOC100125368 ENSRNOG00000043289 ENSRNOT00000031481 1 1 1 80 7 10896371 10896390 TTGGATCCTTCCCAGAAGAG 59 10896019 10896333 CAATTTGTAGCCTATAGCAGTGAG 60 NA Rattus norvegicus 81 AABR07058466.1 ENSRNOG00000050695 ENSRNOT00000046227 3 1 2 89 7 118492970 118494185 GATTTGCCAGACAGACTCC 58 118494238 118494256 CCAAAGTCAGGAATCTGCC 59 NA Rattus norvegicus 81 Tppp3 ENSRNOG00000016890 ENSRNOT00000022863 1 1 1 82 19 37425125 37425259 TCTTCTCCAAAGTCAAGGCA 59 37425062 37425080 CTTTGTTGCCAGCTCTTCC 60 NA Rattus norvegicus 81 Cyb5b ENSRNOG00000011142 ENSRNOT00000086435,ENSRNOT00000015006 2 2 2 80 19 39386429 39389316 CAATTCATGCCAAAGTTCCTG 59 39389357 39389376 AAGTGACGATACAGGAAACC 58 NA Rattus norvegicus 81 RGD1562652 ENSRNOG00000026051 ENSRNOT00000036147 3 1 1 83 20 3138866 3138884 TATTCAAGAGGCACACCCA 59 3138928 3139113 TAGTGTGGGAATCTTGACTCTG 60 NA Rattus norvegicus 81 Tcp11l1 ENSRNOG00000042576 ENSRNOT00000077484,ENSRNOT00000060311 3 2 2 80 3 94626695 94626713 AAGGAGACTGTGCTCAAGG 59 94624461 94626652 AATTCGGGACTCCATGATCC 60 NA Rattus norvegicus 81 Calhm3 ENSRNOG00000026086 ENSRNOT00000036202 2 1 1 81 1 266934070 266934089 GACAGTCTGTGTTGATGGTG 59 266932323 266934027 CACATGTACCTGATGATGCC 59 NA Rattus norvegicus 81 Dennd4a ENSRNOG00000011739 ENSRNOT00000016260 2 1 1 80 8 70372661 70372681 GTTCTTCCACTATAGTTCGCC 59 70372721 70374154 GAGTGCTTTCCTCACATTCTC 59 NA Rattus norvegicus 81 Csrp3 ENSRNOG00000014327 ENSRNOT00000019311,ENSRNOT00000092211 1 2 2 81 1 104151375 104152938 CTGCAGTTCCAACAATCCC 59 104151312 104151331 ATTCTCCAAACTTCGCAGAG 58 NA Rattus norvegicus 81 Rsg1 ENSRNOG00000023346 ENSRNOT00000079905 2 1 2 80 5 159739076 159739604 TGAGACCACTGGTATTCAGAC 59 159739644 159739664 AAACGGAACATAACAACACGG 60 NA Rattus norvegicus 81 Tab2 ENSRNOG00000016054 ENSRNOT00000061999,ENSRNOT00000021905 1 2 2 83 1 2005393 2005614 CCCAGATACCTTCACTCGA 58 2005328 2005349 CTTTGGTTAAGCAGTCAATGTC 58 NA Rattus norvegicus 81 LOC100909594 ENSRNOG00000046558 ENSRNOT00000074363 3 1 1 62 3 159095915 159095933 CTTCTAGTGACAGGAGCCA 58 159096419 159096437 AACTTCTTCCGACTGTGAG 57 NA DesignNoJunction Rattus norvegicus 81 Rgag1 ENSRNOG00000049853 ENSRNOT00000074676 2 1 1 61 X 114377869 114377887 GGCCATGGAGAATGAACTG 59 114378506 114378524 GTTTGGGAACATGCTGGTG 60 NA DesignNoJunction Rattus norvegicus 81 LOC102557415 ENSRNOG00000030626 ENSRNOT00000066317 2 1 1 158 1 215450569 215450587 TTCAGGATGTGGGTCTTCC 59 215450338 215450423 TAGATCTTGCATTGCGAGC 58 NA Rattus norvegicus 81 Atl1 ENSRNOG00000005063 ENSRNOT00000046085 2 1 1 80 6 92332315 92332335 TGACAGTCAGTCAACTTTGAG 58 92332374 92334635 AAGTTGTAGACCTGTATTGAGC 58 NA Rattus norvegicus 81 Inpp4b ENSRNOG00000018382 ENSRNOT00000024981,ENSRNOT00000025013 1 2 2 80 19 29691489 29691507 GACAGTAGCAAGGACGGAG 60 29671912 29691446 CTGTTCATACCAGTCCTCCC 60 NA Rattus norvegicus 81 Tef ENSRNOG00000019383 ENSRNOT00000026258,ENSRNOT00000086355 1 2 2 80 7 123047238 123052959 GTCCAGCACAGAATCATCC 58 123053003 123053021 TTCACATCAACCTCCACAC 58 NA Rattus norvegicus 81 LOC502684 ENSRNOG00000023721 ENSRNOT00000055415 3 1 1 80 3 147909133 147909151 AGACTTCTGCTGAAGACCC 59 147909193 147910331 TTTCAGCTGCTTGATAAGCTC 59 NA Rattus norvegicus 81 Vldlr ENSRNOG00000027491 ENSRNOT00000035814 2 1 1 80 1 245258634 245258655 AGACATCACCAAAGTATGTGAC 59 245258696 245259290 TCGTTGATATGGCACTCCT 59 NA Rattus norvegicus 81 Capza3 ENSRNOG00000008727 ENSRNOT00000011555 2 1 1 60 4 174182209 174182229 ATTGAAGACCACAGCTATGAC 58 174182248 174182269 TCCACTTAGACTTCCAAAGACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kitlg ENSRNOG00000005386 ENSRNOT00000007231 2 1 3 88 7 42331551 42337818 TCCTGAGAAAGGGAAAGCC 59 42337869 42337888 TTACAAGCGAAATGAGAGCC 59 NA Rattus norvegicus 81 LOC690507 ENSRNOG00000015637 ENSRNOT00000071772 1 1 1 80 3 149810733 149810996 CGTCAAACTCACAAGGTCTG 59 149812139 149812158 GTGACTTCAGCCATAATGCC 59 NA Rattus norvegicus 81 AABR07040617.1 ENSRNOG00000043306 ENSRNOT00000067828 1 1 1 80 X 106231271 106231430 CTTTGACCAAGACTTGATGGA 58 106231472 106231490 ATGATTTGAAGGGCAGCAG 59 NA Rattus norvegicus 81 Srsf2 ENSRNOG00000000248 ENSRNOT00000067739 2 1 1 91 10 105794949 105794967 GAGTCCAAGTCTAGGTCGC 60 105793831 105794895 CTTGCCGATCCATCATTCTC 59 NA InUTR Rattus norvegicus 81 Sel1l ENSRNOG00000004464 ENSRNOT00000045870,ENSRNOT00000006143 1 2 2 80 6 115582512 115582533 CTATAACCTAGCACAGATGCAC 59 115581641 115582474 ACGTTCTTAAACAACTCCACTG 59 NA Rattus norvegicus 81 Sel1l ENSRNOG00000004464 ENSRNOT00000045870,ENSRNOT00000006143 2 2 2 80 6 115582512 115582532 TATAACCTAGCACAGATGCAC 58 115581640 115582472 CACGTTCTTAAACAACTCCAC 58 NA Rattus norvegicus 81 Pds5b ENSRNOG00000001098 ENSRNOT00000040830,ENSRNOT00000001464,ENSRNOT00000064951,ENSRNOT00000050733 1 4 4 80 12 703327 703346 TTACTTACCCTCCTGGTGTC 59 703388 707378 TTACAACCATCTTTAGCCGC 59 NA Rattus norvegicus 81 Esx1 ENSRNOG00000048011 ENSRNOT00000072739 1 1 1 80 X 107760294 107761431 GAGTTCAGGTTTGGTTTCAG 57 107760233 107760254 CTGGAACCATGTTTCTATATGC 57 NA Rattus norvegicus 81 Esx1 ENSRNOG00000048011 ENSRNOT00000072739 3 1 1 80 X 107760300 107761437 AATCCAGAGTTCAGGTTTGG 58 107760239 107760260 CCATGTTTCTATATGCTTGTGC 58 NA Rattus norvegicus 81 Fbxo34 ENSRNOG00000011704 ENSRNOT00000092161 2 1 2 116 15 24327812 24332207 TTCTAACTGGCATCTGTTATGC 59 24332283 24332302 TTTCATGCAGTTAGCTCTGC 59 NA InUTR Rattus norvegicus 81 Gna15 ENSRNOG00000005378 ENSRNOT00000007202 1 1 1 80 7 11068543 11068561 GATTGCCCTCATCTACCTG 57 11068605 11069429 TCCTTCATACGGTTCTCCT 57 NA Rattus norvegicus 81 Gna15 ENSRNOG00000005378 ENSRNOT00000007202 3 1 1 80 7 11068542 11068560 TGATTGCCCTCATCTACCT 58 11068604 11069428 CCTTCATACGGTTCTCCTG 57 NA Rattus norvegicus 81 RGD1312005 ENSRNOG00000022429 ENSRNOT00000029239,ENSRNOT00000079217 3 2 2 69 18 54118296 54118314 CCTTCATGGACCATTGAGG 58 54118346 54121599 TTTCCTTCAGATGTCCAGAG 57 NA DesignNoJunction Rattus norvegicus 81 RGD1566073 ENSRNOG00000028320 ENSRNOT00000034681 3 1 1 132 19 30588245 30588794 TGAGTGTACAAGCAGAGGC 60 30588131 30588149 CGAATCTTCTTCCCGAGCT 60 NA Rattus norvegicus 81 LOC100365556 ENSRNOG00000016910 ENSRNOT00000022755 3 1 1 81 3 12306770 12306789 AGACAACTACAAGCGAACTC 58 12217686 12306731 CAGAAGGTAGATTCCTAGATAAGG 58 NA Rattus norvegicus 81 Cxcr1 ENSRNOG00000048239 ENSRNOT00000090868 2 1 1 60 9 81466822 81466841 GGGTGATCTTTGCTGTTGTG 60 81466781 81466800 AGAACCAGATTGTAGGGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Picalm ENSRNOG00000018322 ENSRNOT00000084268,ENSRNOT00000091470,ENSRNOT00000025415,ENSRNOT00000092086 2 4 4 80 1 154418776 154420856 AAAGTTGCAGAGCAAGTTGG 60 154422339 154422360 TAAAGCATCAAGAAGACTGCTG 59 NA Rattus norvegicus 81 Rnaset2 ENSRNOG00000013190 ENSRNOT00000017601,ENSRNOT00000084628 2 2 2 82 1 53190414 53191760 TATGCCAGAACAGGGAGAG 59 53191806 53191824 AGTTCCGCAAATGGAAGTC 59 NA Rattus norvegicus 81 Mad2l1 ENSRNOG00000005376 ENSRNOT00000007285 3 1 1 83 4 97535886 97535906 GCTCATTCACTACCACAATCC 59 97535948 97536410 CAAATGAACCGTCTCTTCAGTC 60 NA InUTR Rattus norvegicus 81 LOC102553249 ENSRNOG00000045707 ENSRNOT00000075012 3 1 1 80 3 167225452 167225474 TGAATCCTTCTCAGAAGAGTCTC 59 167225083 167225416 CCCAAATGTATCCTATAGCACTG 59 NA Rattus norvegicus 81 Diaph3 ENSRNOG00000008986 ENSRNOT00000012167 2 1 2 80 15 70256068 70256086 CAACCCAGTATGATGGCAG 58 70253346 70256026 CACTTCTTCAAGGATGCTCTC 59 NA Rattus norvegicus 81 Fgb ENSRNOG00000007092 ENSRNOT00000077663 3 1 4 60 2 182034335 182034354 CATTTGTAGCTCCAATTGGC 58 182034294 182034313 AAACAAACAAGTTGAGGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itga8 ENSRNOG00000016538 ENSRNOT00000022711 2 1 1 80 17 79675479 79675498 GCTGTCTACTACTGTCCCTG 59 79644796 79675436 TTTCCTGTTGTTGGTGGTG 59 NA Rattus norvegicus 81 Tmpo ENSRNOG00000008797 ENSRNOT00000012715 3 1 1 80 7 31853165 31853188 GTAGATGGTGCAGTAATTTCAGAG 60 31852739 31853126 ATTGGCCACTAAGGAGTCG 60 NA Rattus norvegicus 81 Smarca5 ENSRNOG00000018149 ENSRNOT00000024568 2 1 1 80 19 30951432 30952171 ATGCAAAGGGAATGGTATACTC 58 30952210 30952230 TCTCATCTTGTCCATCTTCCC 59 NA Rattus norvegicus 81 Rnmtl1 ENSRNOG00000037238 ENSRNOT00000056278 2 1 1 90 10 64401879 64404289 TTACTCACCAAAGGCTGTG 58 64404343 64404361 CATTGTTCACAATGGGCAC 58 NA Rattus norvegicus 81 Jkamp ENSRNOG00000004751 ENSRNOT00000006321 1 1 1 80 6 94843175 94843193 CACGATGCTTTACAACCCA 59 94843234 94846460 ATGGTGTATAGTGGGTAGACAG 59 NA Rattus norvegicus 81 Jkamp ENSRNOG00000004751 ENSRNOT00000006321 3 1 1 80 6 94843180 94843199 TGCTTTACAACCCAAGTCCA 60 94843241 94846465 ACACGATGGTGTATAGTGGG 59 NA Rattus norvegicus 81 Ercc5 ENSRNOG00000022812 ENSRNOT00000076248,ENSRNOT00000059349 3 2 3 80 9 50929803 50930817 AAACAGACCTTGGCAAAGAG 59 50930858 50930878 TTTCAGAAGCTTCTCTGTGGT 60 NA Rattus norvegicus 81 Txnrd3 ENSRNOG00000059810 ENSRNOT00000077374,ENSRNOT00000084494 2 2 2 80 4 121647306 121647324 GAATACGGCTGTTGTGGAC 59 121647366 121648079 GAAGGTGTGATACACTTCCAG 59 NA Rattus norvegicus 81 Dpf3 ENSRNOG00000008086 ENSRNOT00000010926 2 1 1 80 6 106724574 106724595 TCCAACATGAACAAGAAGAGTG 59 106721682 106724533 TCCTCCCAAATGAGCAGAG 59 NA Rattus norvegicus 81 Tcp11x2 ENSRNOG00000011034 ENSRNOT00000052009 3 1 1 80 X 106109586 106112111 TGACAAGCAGCCTGATCTC 60 106109524 106109548 CTTGGTAGTGATGTAATAAGCTCTG 60 NA Rattus norvegicus 81 Mogat1 ENSRNOG00000014692 ENSRNOT00000082378 3 1 2 80 9 84412639 84418295 GATCTACACTGTTGTTGGCC 59 84418337 84418356 TGATGCAGCTCATCAATCTG 59 NA Rattus norvegicus 81 Hsd17b4 ENSRNOG00000015840 ENSRNOT00000021646,ENSRNOT00000089750 1 2 2 80 18 44852257 44854167 ATGCATCAGGATTTGCTGG 59 44854210 44854229 ACATAATGCACTGCAGTTCC 59 NA Rattus norvegicus 81 Asic3 ENSRNOG00000008380 ENSRNOT00000011300 3 1 1 81 4 7290478 7290649 AGCAGCAACTGAGTTTCCT 60 7290415 7290433 GGCTCTGGATCAAAGTCGT 60 NA Rattus norvegicus 81 LOC690617 ENSRNOG00000039861 ENSRNOT00000061194 1 1 1 92 7 11216548 11216566 GATACCTCCGCAGTACCTC 59 11216622 11216911 CTGTTGACCACGAACTCCT 60 NA Rattus norvegicus 81 Slc29a4 ENSRNOG00000001115 ENSRNOT00000001477 2 1 1 81 12 13922825 13923465 TAGGATCACCACAGGTTACC 59 13922763 13922781 AGAGAAGAGCTGAAGCCAC 59 NA Rattus norvegicus 81 Olr1374 ENSRNOG00000045802 ENSRNOT00000072967 1 1 1 60 10 12629020 12629038 TCCTCTTCCTGCTCTTCCT 60 12628978 12628997 ATGATGAGCAGATTTCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100366140 ENSRNOG00000048116 ENSRNOT00000037288,ENSRNOT00000074090 1 2 2 80 1 87777167 87777268 ACCAGCGAATTCATGTAAGAG 59 87777107 87777127 TGATTAGCTCTGACCTGTAGG 59 NA Rattus norvegicus 81 Olr540 ENSRNOG00000048820 ENSRNOT00000048376 1 1 1 60 3 74669816 74669835 GCTTTCATGTTCTGATGCAC 58 74669775 74669794 AATCACTCCAGAGAAGACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr641 ENSRNOG00000030406 ENSRNOT00000049517 1 1 1 60 3 76926095 76926116 TTTGGGTCTTACAGAGAATCAG 58 76926056 76926075 CATGATTAGAAGCACAGCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Med21 ENSRNOG00000001820 ENSRNOT00000002500 1 1 1 92 4 180966264 180966955 CTACAGAAGAGTATGCCCAG 57 180967010 180967028 ACTCTTCACTGGGTAAGGA 57 NA Rattus norvegicus 81 Tubb5 ENSRNOG00000061216 ENSRNOT00000079854 1 1 1 98 20 3422693 3423996 GTGCTAAGTTCTGGGAGGT 59 3424058 3424076 ACACAGAGATTCGGTCCAG 59 NA Rattus norvegicus 81 Fam126a ENSRNOG00000010517 ENSRNOT00000080229,ENSRNOT00000014023 2 2 2 80 4 7706633 7706652 TCTAGCTCAGAAAGCACTGG 60 7706695 7707544 GCATTAGCAACCAGCAGTG 60 NA Rattus norvegicus 81 Ubac1 ENSRNOG00000017983 ENSRNOT00000024352 1 1 1 80 3 3463645 3463847 AGGCAAATGCTATGTTGGA 57 3463583 3463601 GAAAGCCCATCTCTGTGAG 58 NA Rattus norvegicus 81 Capn8 ENSRNOG00000003468 ENSRNOT00000067005,ENSRNOT00000004649 3 2 2 80 13 101018066 101018089 ACCTGAGTGGAATTACATAGATCC 60 101018128 101018857 AAGGACATCCAGAACTCGC 60 NA Rattus norvegicus 81 Cisd2 ENSRNOG00000048258 ENSRNOT00000074632 1 1 1 81 2 240597721 240611432 CCTCACAGTTGCAGAATGG 59 240597658 240597676 GAATGGACGAACTGCAAGG 59 NA Rattus norvegicus 81 Lpo ENSRNOG00000008422 ENSRNOT00000011402 3 1 1 80 10 75111718 75112036 GTAACAACAGGAAGAATCCAGC 60 75111659 75111677 GTCCATCCTCGTACTCTGC 60 NA Rattus norvegicus 81 Olr658 ENSRNOG00000049836 ENSRNOT00000007996 2 1 1 60 3 77127045 77127064 ATCCTAGTCACCATCACCTG 59 77127004 77127025 GGCAGAGAAAGTAGTACATTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tln2 ENSRNOG00000018373 ENSRNOT00000024885,ENSRNOT00000081450,ENSRNOT00000012026,ENSRNOT00000064613,ENSRNOT00000031988 1 5 5 80 8 73120149 73121286 CAGAGATTAGCCCAGGTGG 60 73120087 73120105 CACATCCTTCTGACCAGGG 60 NA Rattus norvegicus 81 Rhbdf2 ENSRNOG00000011459 ENSRNOT00000068026 1 1 1 80 10 105577783 105577801 ACAGAGGCGTGTATGAGAG 59 105577596 105577739 GGTGGATGAGGTCAATCGA 59 NA Rattus norvegicus 81 Hif3a ENSRNOG00000017198 ENSRNOT00000023490 3 1 1 80 1 78989746 78990018 CATCCACACTTTGCTGAGC 60 78989684 78989702 GTCCACAGATAGCCTCCAG 59 NA Rattus norvegicus 81 Nrxn3 ENSRNOG00000047574 ENSRNOT00000064872 2 1 1 80 6 114018598 114018617 TGTTTCATCTGCTGAATGCT 58 114018657 114066442 AGACTCTTATCTGACCTACCTG 58 NA Rattus norvegicus 81 B4galnt4 ENSRNOG00000053075 ENSRNOT00000086483 2 1 1 80 1 213876529 213876626 GACTGCAGTTCGTGTACCT 60 213876669 213876688 AGCACTTGTTCTCTGTCTCC 60 NA Rattus norvegicus 81 Slc24a5 ENSRNOG00000005158 ENSRNOT00000043611 3 1 1 80 3 117346589 117346699 GCCTTCTTGGGTGTATTTATCAC 60 117346736 117346757 GCCGAGGAGATTATAAATTGCA 59 NA Rattus norvegicus 81 Prss34 ENSRNOG00000018466 ENSRNOT00000024904 3 1 1 83 10 14657238 14657257 AAATGGGAACACATCTGTGG 59 14657300 14657527 CATCTCTTTCAGCTCTACACAG 59 NA Rattus norvegicus 81 Tmem63c ENSRNOG00000011334 ENSRNOT00000015571,ENSRNOT00000089644 3 2 2 80 6 111077266 111077701 ACACAATGACAGCCTAACC 58 111077745 111077763 TCTGCCTCCAAGTAAACCT 58 NA Rattus norvegicus 81 Fam175b ENSRNOG00000017222 ENSRNOT00000023214 1 1 1 80 1 204876289 204876307 TCTCTACCGCCAACAACTC 59 204876345 204877929 GTGATATCCTTTGATTATACCTGCG 60 NA Rattus norvegicus 81 Syngr2 ENSRNOG00000050547 ENSRNOT00000074225 3 1 1 93 10 106815618 106815999 CCTGCTCTTCTCAGCTCTC 60 106816055 106816074 CAACACGTCATCAGGTTTGG 60 NA Rattus norvegicus 81 Vsig8 ENSRNOG00000008668 ENSRNOT00000011539 3 1 1 68 13 90949379 90949698 TGAAAGTCTCAGACTCCCA 58 90949730 90949748 CTAGCATGAGCAAAGAGCC 59 NA DesignRelaxed Rattus norvegicus 81 Crygb ENSRNOG00000032926 ENSRNOT00000043766 2 1 1 93 9 71798131 71798237 GCGAGATGGGAAAGATCAC 58 71798056 71798074 AAGTAGGTCTGCAGGTTGG 59 NA InUTR Rattus norvegicus 81 Gtf2h1 ENSRNOG00000012360 ENSRNOT00000066791,ENSRNOT00000087920 2 2 2 80 1 102864263 102867293 CATTAGACGAGGGCTATGG 57 102867336 102867355 TGGCAGCATTACTATTCTCC 58 NA Rattus norvegicus 81 Ambn ENSRNOG00000003718 ENSRNOT00000005003 1 1 1 80 14 21247056 21247787 CACTTTCTCAGTATTCTAGACTTGG 59 21247000 21247018 AATTATGCGGTGGGAGGAG 60 NA Rattus norvegicus 81 Cenpm ENSRNOG00000023262 ENSRNOT00000036917 1 1 1 84 7 123470748 123472983 AAATACAGCCTCCAGAAAGTG 58 123470684 123470702 CTGTGACAAGGAAGCACAC 59 NA Rattus norvegicus 81 Slc39a2 ENSRNOG00000010375 ENSRNOT00000013786 3 1 1 80 15 28296053 28296072 GTTGATGCATATGACTGCTG 57 28296113 28296369 CTTCCTGTACTATTCTGCACC 58 NA Rattus norvegicus 81 Fam115e ENSRNOG00000038872 ENSRNOT00000075946,ENSRNOT00000059395 3 2 2 80 4 72011188 72013102 CTAGAAACTTATCTCCAGCTCCA 60 72011130 72011150 AGTGAGGGTTTGGTAGTTAGC 60 NA Rattus norvegicus 81 Bora ENSRNOG00000024798 ENSRNOT00000039344 1 1 1 80 15 83457569 83457587 CCATCGGCTATCTGTTCAC 58 83457631 83460103 AAACTTCCTGTGCTCTGAC 58 NA Rattus norvegicus 81 Pigw ENSRNOG00000027857 ENSRNOT00000029769 1 1 1 60 10 72195438 72195457 GAGAAGAGCACAGGTCAGAG 60 72195397 72195415 AACAGCCACCGAGAATACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 T2 ENSRNOG00000024172 ENSRNOT00000033685 1 1 1 80 1 52941722 52942660 CCTACCTGATTGTAGGGCTG 60 52941661 52941681 TCCAGAAATCCTCGTAGTCAC 59 NA Rattus norvegicus 81 Ube4b ENSRNOG00000014986 ENSRNOT00000055572 1 1 1 80 5 166196022 166198731 GGTGTTCAAGCAGATCTTTATCC 60 166195964 166195984 AAGTAGTCGCTATCCAAGGAG 59 NA Rattus norvegicus 81 Ube4b ENSRNOG00000014986 ENSRNOT00000055572 2 1 1 80 5 166196021 166198730 GTGTTCAAGCAGATCTTTATCCC 60 166195963 166195984 AAAGTAGTCGCTATCCAAGGAG 60 NA Rattus norvegicus 81 Cd248 ENSRNOG00000020197 ENSRNOT00000027339 1 1 1 60 1 220447463 220447482 GGTGGCTTTGAGTGTTACTG 59 220447503 220447523 TACAACTGATACCATCTGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lonrf3 ENSRNOG00000013092 ENSRNOT00000089266,ENSRNOT00000017550 3 2 2 80 X 122951686 122951705 AAGAAGAGGAATCGTTGCCA 60 122951746 122952611 AGCAGGAAGATCTTGTTTGGA 60 NA Rattus norvegicus 81 RGD1559810 ENSRNOG00000026207 ENSRNOT00000038249 3 1 1 146 20 36060746 36060764 TGAGGGTGACAGTACATGG 59 36060597 36060639 ATCCAGACACTTGAATCTTTGC 59 NA Rattus norvegicus 81 RGD1561137 ENSRNOG00000030143 ENSRNOT00000043621 3 1 1 60 3 21984125 21984143 TGTGGCCCAAATTTATGCT 58 21984166 21984185 TTGGTAATAAGCCACCAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tulp4 ENSRNOG00000018012 ENSRNOT00000024412 2 1 1 80 1 47120857 47122360 CTTACCAGTTACGGGAGCA 59 47122403 47122422 CTGTGGATTGGTGCAATAGG 59 NA Rattus norvegicus 81 Ring1 ENSRNOG00000000467 ENSRNOT00000000543 2 1 1 80 20 3813548 3813567 AGAGATCGAGCTTGTGTTCC 60 3813300 3813510 GTAGTCTTCACATACCTAGTCTGG 60 NA Rattus norvegicus 81 Ring1 ENSRNOG00000000467 ENSRNOT00000000543 3 1 1 81 20 3813548 3813567 AGAGATCGAGCTTGTGTTCC 60 3813299 3813509 AGTAGTCTTCACATACCTAGTCTG 59 NA Rattus norvegicus 81 Vom1r49 ENSRNOG00000050887 ENSRNOT00000046111 2 1 1 60 1 67660740 67660759 CAATCAGCCCTAATCACTCC 58 67660778 67660800 CCAATGTACTTGATGACTCTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sprr3 ENSRNOG00000024046 ENSRNOT00000030295 3 1 1 60 2 192642331 192642349 ACACTGTTGTTCTTGAGCC 58 192642289 192642309 GTGACGTTGGTAGAACATGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Alms1 ENSRNOG00000022343 ENSRNOT00000045735 2 1 1 80 4 117465957 117466264 CTGTGAAGGAGTCTCATGG 57 117466308 117466326 CTGTAAATCTTGGGCAGGT 57 NA Rattus norvegicus 81 Igf2bp3 ENSRNOG00000009052 ENSRNOT00000084543,ENSRNOT00000050994 3 2 2 85 4 78750319 78754697 GCTTCGATTAAGATCGCGC 60 78750252 78750270 TTGAACTGAGCCTCTGGTG 60 NA Rattus norvegicus 81 Mrpl54 ENSRNOG00000020464 ENSRNOT00000027737 1 1 1 69 7 11322225 11323283 CTCTGAGTACCCGACATGG 59 11323316 11323334 CGGTTCTAGGTCCTCTAGC 59 NA DesignNoJunction Rattus norvegicus 81 Olr493 ENSRNOG00000032730 ENSRNOT00000045888 2 1 1 60 3 74790167 74790186 CTTGTTCTTGTGTCCTACCT 57 74790126 74790144 CCTCAGCAGAGTTCATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc25a13 ENSRNOG00000009957 ENSRNOT00000013817 2 1 1 80 4 31651633 31651653 ACAACATGGAGCTCATTAGGA 59 31650933 31651593 CAAACTCCTCCTTAGTCACCT 59 NA Rattus norvegicus 81 Pigc ENSRNOG00000026497 ENSRNOT00000077069,ENSRNOT00000035558,ENSRNOT00000076417 3 3 3 60 13 79888256 79888274 TCTATGCCCGGAAATACCA 58 79888297 79888316 TGTTGTATCACCACACTGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361475 ENSRNOG00000033891 ENSRNOT00000045139 1 1 1 80 20 33175113 33181024 GTGTTTGAGAATGCTGCTG 58 33181065 33181086 GTATCTTCTTTCCTCCTTTGCT 58 NA Rattus norvegicus 81 Gabre ENSRNOG00000061182 ENSRNOT00000087138 3 1 1 80 X 152227076 152227097 ATGATATCACCATACCCAACCA 59 152226321 152227039 CATCAATGGTCATCCTAACTGTG 60 NA Rattus norvegicus 81 RGD1562885 ENSRNOG00000030676 ENSRNOT00000079750,ENSRNOT00000039998 2 2 2 61 20 3689765 3689783 AAACCTCCTGGCTCTTCTG 59 3689722 3689740 TCTAACCTGGCTCCAAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxl16 ENSRNOG00000022248 ENSRNOT00000039777 2 1 1 90 10 15184354 15184372 CATCGACAACTACTCGCTC 58 15184425 15185106 CAACATCACCTCTAGACCAG 58 NA Rattus norvegicus 81 Arhgef18 ENSRNOG00000028090 ENSRNOT00000066281 1 1 1 80 12 1984188 1987112 GTCTTTGCTTCTGTGGACTC 59 1987155 1987173 CTTCTCCTCGTTGGCTACC 60 NA Rattus norvegicus 81 AABR07030995.1 ENSRNOG00000058822 ENSRNOT00000074598 3 1 1 80 10 111775494 111776910 AGGAGAAACATTGGTTCCC 57 111776954 111776972 GCTGTTTGTTTCTGATGGC 58 NA Rattus norvegicus 81 Akr1c14 ENSRNOG00000017672 ENSRNOT00000023835 1 1 1 80 17 69827030 69827050 CGTGTAGCACTAAATGATGGT 59 69822095 69826990 TTCATCCTTAGCAACCTTCTC 58 NA Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000023617,ENSRNOT00000090492,ENSRNOT00000088239 1 3 7 80 9 43625916 43625934 TTGAGCCAATGGTTGTGAG 58 43625977 43632705 AAATGGCTTCAATGGTTTCG 58 NA Rattus norvegicus 81 Ppm1e ENSRNOG00000024730 ENSRNOT00000003859 3 1 1 80 10 74566794 74566812 TGAAGTCCTCCAGAGTGAC 58 74562154 74566751 GTCTCAATTTCCACAGTCCC 59 NA Rattus norvegicus 81 Olr789 ENSRNOG00000048999 ENSRNOT00000071479 3 1 1 60 3 103345203 103345221 GCATGATGGGAAACTCCCT 60 103345161 103345182 GGAGAATGTAAGTGAGGATCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1432 ENSRNOG00000002858 ENSRNOT00000003818 2 1 1 60 10 44256120 44256140 AGCTCAACAAGGTCATTTCTG 59 44256080 44256100 ATAACTGGGTTCAGTAGTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1583 ENSRNOG00000045582 ENSRNOT00000044784 3 1 1 60 13 91725854 91725874 CTTCTTCTGTGATGTGAGACC 59 91725895 91725914 CTCATTGATAGTGGTGTCGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102551504 ENSRNOG00000049274 ENSRNOT00000052217 1 1 1 60 1 67917879 67917898 ACAATCAGCCCTAATCACTC 57 67917918 67917939 CAATGTACTTGATGACTCTGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgef10l ENSRNOG00000050636 ENSRNOT00000074074,ENSRNOT00000075382,ENSRNOT00000074378 1 3 3 82 5 159066880 159066900 GTCTTCATCACACCAAATCCC 59 159056499 159066836 TTCTCCTCCCTTAGTCCGA 59 NA Rattus norvegicus 81 Ivd ENSRNOG00000009421 ENSRNOT00000013829 2 1 1 80 3 110686802 110689225 GGCATTCAATGTTTAGGTGGA 59 110689266 110689285 CTCGTACAGTTTGGCATCTC 59 NA Rattus norvegicus 81 Tcte3 ENSRNOG00000015293 ENSRNOT00000078312,ENSRNOT00000047157 1 2 2 83 1 56982501 56982519 CACCCAAACGCATCAATCC 60 56976090 56982457 AAGATCTGTGCATATGACTCCT 59 NA Rattus norvegicus 81 Taf1 ENSRNOG00000002565 ENSRNOT00000076799,ENSRNOT00000003494 3 2 2 80 X 71441386 71442045 TTCAAACGTACAGGGATGG 58 71442089 71442107 AGCTCTGATCTCCTCTTCC 58 NA Rattus norvegicus 81 Dpt ENSRNOG00000002947 ENSRNOT00000077070,ENSRNOT00000066119,ENSRNOT00000079796 1 3 3 91 13 83073934 83085477 CATGGAATGGTACCAGAAGTG 59 83085530 83085548 ATTGCCACTCTCGATCCAG 60 NA Rattus norvegicus 81 Map2k2 ENSRNOG00000020005 ENSRNOT00000027272 3 1 1 86 7 11467856 11475669 CCAGAAAGCTGATCCACCT 59 11467788 11467806 GTGAGTTGCACTCATGCAG 60 NA Rattus norvegicus 81 Olr583 ENSRNOG00000049657 ENSRNOT00000042996 3 1 1 60 3 75849096 75849116 CACCTCTCATTCTCTGACCTC 60 75849136 75849156 GATCTAACAGCATCTTGGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trip6 ENSRNOG00000048580 ENSRNOT00000077058 2 1 2 84 12 22453768 22453882 GAGTACTTTGGTCGGTGTG 58 22453930 22453948 TATGGAAGACACGGTCCAG 59 NA Rattus norvegicus 81 Olr239 ENSRNOG00000030863 ENSRNOT00000051241 1 1 1 60 1 172075729 172075747 GCTACTCCACTCTCATGTC 57 172075687 172075705 CCCGCATAGGAAATAACCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017656.1 ENSRNOG00000047226 ENSRNOT00000073230 1 1 1 80 15 29712400 29712595 GATTTGCTGGGTGAGAGGA 59 29712338 29712358 CTCAGAGAAGAATTGGTTCCC 58 NA Rattus norvegicus 81 Pcdhb4 ENSRNOG00000027469 ENSRNOT00000027210 2 1 1 60 18 30388525 30388546 AGAAATGCTCCTAACAATCCCT 60 30388566 30388585 TGCCTTTAGAGGAAACACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 G6pc2 ENSRNOG00000050620 ENSRNOT00000091674 1 1 2 60 3 55466599 55466618 GGTCAGCTTGAATGTGTACC 59 55466640 55466715 AAAGGTGAATGCAAACAGGA 58 NA DesignNoJunction Rattus norvegicus 81 Sec16a ENSRNOG00000019122 ENSRNOT00000064083 3 1 1 80 3 3875777 3875796 CAGCTCCTCAAAGTGATACC 58 3875468 3875734 CAGCAAGGTCTCTAAGCTG 58 NA Rattus norvegicus 81 Arl8b ENSRNOG00000055860 ENSRNOT00000080663 2 1 1 80 4 140870971 140870991 TGAAGATATGATACCCACCGT 59 140871028 140872081 CCTATGTCCCAGATCTTTATTGTG 59 NA Rattus norvegicus 81 Pde10a ENSRNOG00000011310 ENSRNOT00000043474,ENSRNOT00000067142 3 2 2 80 1 52444621 52444640 TCTGAAAGTGTTAGTGCGGA 59 52424719 52444582 CTTAGGAGATGGTTCATCTTCTG 59 NA Rattus norvegicus 81 LOC681470 ENSRNOG00000049477 ENSRNOT00000071206 2 1 1 60 13 91768299 91768318 AAGGTTTCTCCAGCTTTCAG 58 91768341 91768359 TACAAGGCCAGAAAGACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam217b ENSRNOG00000053607 ENSRNOT00000088447 1 1 2 111 3 173955863 173955883 GGAATAAAGAAGTCACCTCCC 58 173956910 173959471 TTTATACTGCAGCCTTTAGCAG 59 NA Rattus norvegicus 81 Csnk1d ENSRNOG00000036676 ENSRNOT00000015178,ENSRNOT00000054936 3 2 2 80 10 110159060 110161379 ATGCTCAAATTTGGTGCCAG 60 110158999 110159021 GGAGTGTCTTAATCGTTCTTCTC 59 NA Rattus norvegicus 81 AABR07032503.1 ENSRNOG00000038598 ENSRNOT00000058894 2 1 1 81 18 68926105 68926125 CCAGCATTACATCAAGAACAC 58 68925309 68926063 GAGAGTTTGCACCTGATCTC 58 NA Rattus norvegicus 81 Dnm3 ENSRNOG00000026490 ENSRNOT00000067653 2 1 1 80 13 80179094 80179976 GAAATCAGGGAACCAATCTTCC 59 80140072 80140090 TGATGCCAATGTTGCTGAC 59 NA Rattus norvegicus 81 Chordc1 ENSRNOG00000026643 ENSRNOT00000030569 3 1 1 103 8 17425047 17432187 ATGCCCTAAAGGGTTGGTC 60 17433163 17433183 TGGCTTCTCACTATTATGCCT 59 NA Rattus norvegicus 81 Nt5dc3 ENSRNOG00000026793 ENSRNOT00000031871 3 1 1 80 7 27344139 27344160 GAAGAGGTCATTGACATGTACG 59 27344201 27345217 CCCGTGAGAACTCTTTCCA 59 NA Rattus norvegicus 81 Spdye4 ENSRNOG00000058563 ENSRNOT00000080489 2 1 1 80 12 13391085 13392484 TCCCAGGACTATCAGAACCA 60 13392527 13392545 ATGACAAGTCCCTCTTCCG 59 NA Rattus norvegicus 81 Med12l ENSRNOG00000010680 ENSRNOT00000090538,ENSRNOT00000014470 3 2 4 80 2 149249582 149249602 ACTTGTGCCTATTACTCTGCT 59 149249643 149273129 CTGTGTCCACTCCAAATTGG 59 NA Rattus norvegicus 81 Zc3h13 ENSRNOG00000011237 ENSRNOT00000015467 1 1 1 80 15 57366200 57370374 ACCAACAGAGATGATTCTGAC 58 57370415 57370434 TTTCTGACGCTTCATTTCCA 58 NA Rattus norvegicus 81 Gpatch1 ENSRNOG00000011584 ENSRNOT00000015791 2 1 1 80 1 91540616 91542862 TCTCTGATCCATGCTGCTG 60 91540554 91540573 CCGTTCATCGATCTGTACCT 59 NA Rattus norvegicus 81 LOC100910807 ENSRNOG00000028899 ENSRNOT00000049424 3 1 1 103 X 124393485 124393503 CTCACTTGAACCAGGAAGC 59 124393570 124395697 TTTCTACTCTCCATGCCGG 59 NA InUTR Rattus norvegicus 81 Arpc1b ENSRNOG00000000991 ENSRNOT00000001315 2 1 1 85 12 11256204 11256222 CTGTCCTTAGCCTGGACTG 60 11255199 11256156 ATAGGCAGAGAAGATCCTGC 59 NA Rattus norvegicus 81 Reps1 ENSRNOG00000059224 ENSRNOT00000089607,ENSRNOT00000090703 3 2 2 80 1 13287074 13287093 AGTTCCCATTCGTATGACTC 57 13287136 13288140 GGGTTAGTATGATCACCGC 58 NA Rattus norvegicus 81 Sfmbt2 ENSRNOG00000029235 ENSRNOT00000065942 1 1 1 80 17 71876084 71878353 TGTGCTTCAGACATGTGGA 59 71876022 71876040 GATGGTTCTTGTTGGCCAC 60 NA Rattus norvegicus 81 Psmc3 ENSRNOG00000011414 ENSRNOT00000015757 3 1 1 80 3 79877522 79877540 AGGAGGTGCTCAAGATGTC 59 79877580 79877903 CACTCTTCATGATCTTGATCTCG 59 NA Rattus norvegicus 81 Mtmr2 ENSRNOG00000005923 ENSRNOT00000008566 1 1 1 80 8 12329504 12330997 GACAAGACAGTTCCCTACC 57 12331039 12331059 AATAGACAGCTGTACAAGTGG 58 NA Rattus norvegicus 81 Mrpl53 ENSRNOG00000052279 ENSRNOT00000084616 1 1 1 80 4 114808082 114808100 CAACCTCAACTGCTCTGTG 59 114808142 114808257 TACCCATCTCCGAATAACACG 60 NA Rattus norvegicus 81 AABR07030897.1 ENSRNOG00000059401 ENSRNOT00000077535 1 1 1 80 10 108356363 108356384 GTATGAGGCTCAATACTTGTCC 59 108356424 108356593 TCAATCTCTGTGATGGCCTC 60 NA Rattus norvegicus 81 AABR07030897.1 ENSRNOG00000059401 ENSRNOT00000077535 2 1 1 80 10 108356362 108356383 TGTATGAGGCTCAATACTTGTC 58 108356424 108356592 CAATCTCTGTGATGGCCTC 58 NA Rattus norvegicus 81 Prpf18 ENSRNOG00000018396 ENSRNOT00000091554,ENSRNOT00000024872 3 2 2 80 17 77613568 77615388 CATTGAGGAGTTAGAGGCAC 58 77615430 77615449 AGGAACTTGGTGATGATGTC 58 NA Rattus norvegicus 81 Ophn1 ENSRNOG00000026573 ENSRNOT00000076551,ENSRNOT00000034772 3 2 2 82 X 68352913 68355144 ACAGGAGAAATGGGCTCTG 59 68352849 68352867 GTGTCATGGTGAGTGTCCT 59 NA Rattus norvegicus 81 Rpl39 ENSRNOG00000043348 ENSRNOT00000064521 1 1 1 105 X 123707221 123707239 AGAATCAAGCGATTCCTGG 58 123705413 123707156 GTCTTCTCTTAGAGTTGTACCTG 58 NA Rattus norvegicus 81 Ptpn21 ENSRNOG00000060568 ENSRNOT00000079697 1 1 1 80 6 122699288 122699306 CACCGTCTACTTTGGAGTG 58 122689220 122699246 AGGTAATACTGGTACCTGGTG 59 NA Rattus norvegicus 81 LOC100362409 ENSRNOG00000049515 ENSRNOT00000073734 1 1 1 80 X 83860208 83862011 ACAATGTGATTTAGTTGCTGGG 60 83860149 83860167 TATTCCTCAGCCAGCTTCC 59 NA Rattus norvegicus 81 Srebf1 ENSRNOG00000003463 ENSRNOT00000047053,ENSRNOT00000004753 2 2 2 80 10 46572646 46572665 GTGGTTTCCAACATGACCTG 60 46572495 46572604 CATGTAGGAAGACCCTCCTC 59 NA Rattus norvegicus 81 RGD1309651 ENSRNOG00000017646 ENSRNOT00000023721 1 1 1 166 19 54187327 54204687 GTCTGAAAGGCTTTAAGATGTG 58 54184991 54187200 CTCATCCATCCAGACTTGG 57 NA Rattus norvegicus 81 LOC679149 ENSRNOG00000048039 ENSRNOT00000074240 2 1 1 80 19 2192 2952 TGAGATGTTCTCTACTATGGTAGC 59 2135 2153 GCTCTTAGACAGTGCACCA 60 NA Rattus norvegicus 81 Tmem207 ENSRNOG00000048672 ENSRNOT00000074688 1 1 1 80 11 77654669 77654687 AAAGCTGTGGAACTGATCG 58 77654731 77663702 TTTCTGCACCATAAACGGG 59 NA Rattus norvegicus 81 Olr555 ENSRNOG00000010052 ENSRNOT00000013328 2 1 1 60 3 75299854 75299875 ACTTCTTCTGTGACATACCTCC 60 75299893 75299914 TCATTCACAAAGATGTTCCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc28b ENSRNOG00000047578 ENSRNOT00000083369,ENSRNOT00000075659 3 2 2 80 5 147825159 147825177 CTATGAGATGGAGGGAGGG 58 147824990 147825116 GAACATTCTTTCCCAAAGGC 58 NA Rattus norvegicus 81 P3h2 ENSRNOG00000055751 ENSRNOT00000089540 3 1 1 80 11 78147027 78147051 CAATGTAGACTTCTATGAGAGTCTG 59 78147087 78147442 AATGCTGTTAAATCCTCTCGG 59 NA Rattus norvegicus 81 Rapgefl1 ENSRNOG00000027871 ENSRNOT00000030425 1 1 1 80 10 86763463 86763484 TCATCTCCTAGCATTCAGTAGC 60 86763524 86763794 CCTCCATGTCTAGACAGAGG 59 NA InUTR Rattus norvegicus 81 Klhl42 ENSRNOG00000001844 ENSRNOT00000002523 2 1 1 84 4 181495362 181495380 CCTCTGGCTGAGTTCTCTG 60 181495428 181500778 TGTTCATGTTGCGATCTCG 59 NA Rattus norvegicus 81 Klhl42 ENSRNOG00000001844 ENSRNOT00000002523 3 1 1 85 4 181495362 181495380 CCTCTGGCTGAGTTCTCTG 60 181495428 181500779 ATGTTCATGTTGCGATCTCG 59 NA Rattus norvegicus 81 Kcnj12 ENSRNOG00000002303 ENSRNOT00000089123,ENSRNOT00000057953 2 2 2 60 10 47340650 47340668 GAGGATGAGGTGGCTACAG 59 47340692 47340710 TGTCAAAGTCATGCTCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103690291 ENSRNOG00000058639 ENSRNOT00000088672 1 1 1 60 4 72308662 72308680 CCACATTCTGCCTCATCTG 58 72308702 72308722 CCACAACAGCATAGAACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhb5 ENSRNOG00000020084 ENSRNOT00000027206 1 1 1 60 18 30400541 30400560 CCCAGAGCTACCAGTATGAG 59 30400583 30400601 AATTTGAACTCACCAGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl41 ENSRNOG00000042233 ENSRNOT00000066159 3 1 1 81 7 2973780 2973912 TCTTCCTTGAGACTCCTGC 59 2973196 2973215 CATCTTTCTTCTCTTGCGCT 59 NA InUTR Rattus norvegicus 81 AC097912.1 ENSRNOG00000053213 ENSRNOT00000085902 2 1 1 60 4 71790712 71790733 ACCCACATTGATCTTCATTGTC 59 71790753 71790772 ATTCTGCAACATAGAGGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Galr1 ENSRNOG00000016654 ENSRNOT00000022401 2 1 1 88 18 79257744 79257762 ACAAGAAGGCTTACGTGGT 59 79252291 79257693 ATTGAGAACCTTGGCATAGC 58 NA Rattus norvegicus 81 Olr801 ENSRNOG00000061052 ENSRNOT00000077384 3 1 1 60 4 71870243 71870261 AATGCAACCTGGGTAAGTG 58 71870201 71870220 CTTGGATGTGTTTGTCACTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gse1 ENSRNOG00000017489 ENSRNOT00000023607 1 1 1 80 19 54138907 54139348 CTTCCAACCACTCAACCTC 58 54139391 54139410 AAGCTTCTCAGGTAGTCCTC 59 NA Rattus norvegicus 81 Ugt2a1 ENSRNOG00000001973 ENSRNOT00000048482 2 1 5 80 14 22599441 22599460 CATCCTTGCCAAACATTGAG 58 22599500 22607590 CAAAGTCTTCCATTTCCTTAGG 57 NA Rattus norvegicus 81 Setdb1 ENSRNOG00000021143 ENSRNOT00000028709,ENSRNOT00000077325 1 2 2 80 2 196511844 196511863 GTATGAAGACATCCTCAGCC 58 196510767 196511802 TCACAGCACCCATATTAGGA 58 NA Rattus norvegicus 81 Lrrc24 ENSRNOG00000016204 ENSRNOT00000090463,ENSRNOT00000030517 1 2 2 98 7 117780743 117782573 CCTCACAGAGAACCCATGG 60 117780663 117780682 TTCTTGTCTCTGGAGCTCAG 59 NA Rattus norvegicus 81 rnf141 ENSRNOG00000017900 ENSRNOT00000024561 2 1 1 85 1 175647003 175650545 CTGAACTCAATGATGTAACTGC 58 175646939 175646957 AGAAGAATCAGACCCAGGT 58 NA Rattus norvegicus 81 Cpne1 ENSRNOG00000050864 ENSRNOT00000026657 2 1 1 80 3 151617868 151618039 ACGATTTCAGAATGCTCCA 57 151617806 151617827 TTGAAGTAGGAAACCATCTGAG 58 NA Rattus norvegicus 81 Sorcs3 ENSRNOG00000028832 ENSRNOT00000065001 3 1 1 80 1 268189281 268189300 TACTGATCCTGACAAAGCTC 57 268189341 268291402 CACCATAATCTACTGACCTCC 57 NA Rattus norvegicus 81 Lhx3 ENSRNOG00000018427 ENSRNOT00000025047,ENSRNOT00000045587 2 2 2 101 3 3657614 3657633 CAAGTGTCTCAAGTGCAGTG 60 3656846 3657551 CCGAAGCGCTTAAAGAAGTC 60 NA Rattus norvegicus 81 LOC680058 ENSRNOG00000026891 ENSRNOT00000034790 3 1 1 63 1 79727688 79727706 AAAGAAAGAAGGCTGTCGT 57 79727750 79727770 CCTTCTTCAATGACTATGCAC 57 NA DesignNoJunction Rattus norvegicus 81 Pnkd ENSRNOG00000014806 ENSRNOT00000081406 3 1 3 86 9 81566992 81567013 AGAATACATTCCCAGAAAGAGG 58 81586089 81586107 AAGTGAGATGGAGGCTGTC 59 NA DesignNoJunction Rattus norvegicus 81 Olr695 ENSRNOG00000050826 ENSRNOT00000047996 1 1 1 60 3 78323401 78323422 CCTGGCTTTCTTGTCTTTACTG 60 78323362 78323381 AATCATCTTGGGTGTCATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910370 ENSRNOG00000048523 ENSRNOT00000073724 3 1 1 80 7 117969533 117969700 TGCCATGAATCCTGTGGAG 60 117969743 117969762 GCATCTCTTCGGATAGTGGA 59 NA Rattus norvegicus 81 Pbx3 ENSRNOG00000022162 ENSRNOT00000082036,ENSRNOT00000029600 3 2 2 81 3 13247869 13270127 TCACAGTATCACAGGTATCCA 58 13247808 13247826 GCCTCCTCTTGAAATTTGC 57 NA Rattus norvegicus 81 Ift27 ENSRNOG00000006440 ENSRNOT00000008450 1 1 1 80 7 119399627 119401046 AAATGCTGGATAAACTGTGGG 59 119399567 119399585 AGCTGATGAAGGACTGCTC 60 NA Rattus norvegicus 81 AABR07017639.1 ENSRNOG00000049830 ENSRNOT00000074782 2 1 1 96 15 29532820 29532956 GCTCCTCATCCTCACAAGG 60 29532742 29532766 GTTGCAGTGTATAGTAAGAATGTCC 60 NA Rattus norvegicus 81 LOC100361240 ENSRNOG00000049099 ENSRNOT00000047113 1 1 1 60 15 19429694 19429714 GCTTGGAGACATTTCTACTGG 59 19429735 19429754 GGTAATCTCGGAGGTATTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1519 ENSRNOG00000045565 ENSRNOT00000074715 3 1 1 60 10 61160878 61160896 TATGGGACGCTTGGTATGG 59 61160917 61160938 CTGAGTCTTTCATGGAGTAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trappc3 ENSRNOG00000010550 ENSRNOT00000014383 1 1 1 80 5 144294106 144294583 CTGGAGATGGTCCAGATGG 59 144294626 144294645 CATCCTGATTTCTGTCACGC 59 NA Rattus norvegicus 81 Trappc3 ENSRNOG00000010550 ENSRNOT00000014383 2 1 1 82 5 144294106 144294583 CTGGAGATGGTCCAGATGG 59 144294627 144294647 CTCATCCTGATTTCTGTCACG 59 NA Rattus norvegicus 81 Rhox2 ENSRNOG00000040013 ENSRNOT00000066130 1 1 3 105 X 123989721 123990558 AAGGTACCTCCTTTGCCAC 60 123988554 123988572 ATCTGTCATGGAGATGGCG 60 NA Rattus norvegicus 81 Itgb2 ENSRNOG00000001224 ENSRNOT00000001639 3 1 1 80 20 11785447 11787256 AAGCCTACTACAAACTCTCCTC 59 11785388 11785409 AGGAGTCATAGGTGACTTTCAG 59 NA Rattus norvegicus 81 Olr1440 ENSRNOG00000048241 ENSRNOT00000048778 2 1 1 60 10 44972280 44972298 GACACCTTCCTCTTCACAG 58 44972238 44972258 TGATGTTTCCTATGAGAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmprss11bnl ENSRNOG00000002002 ENSRNOT00000002743 1 1 1 80 14 24108173 24108193 ATCTTACATCAGATGCTGGAG 57 24107463 24108132 TTTAGTGATTTCCGTGAGCT 57 NA Rattus norvegicus 81 Smim3 ENSRNOG00000019536 ENSRNOT00000026426 1 1 1 64 18 55771401 55771419 GCTTGTAATCCTGACTGGG 58 55746135 55746153 GATTGGCTGATAGCATCCA 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ston2 ENSRNOG00000004458 ENSRNOT00000005881 3 1 1 80 6 115401576 115408199 CAAGAACTCAGCTTCTGGC 59 115401514 115401532 AATCTGGAAGGCACTTCCC 60 NA Rattus norvegicus 81 AABR07006042.1 ENSRNOG00000028955 ENSRNOT00000054866 2 1 2 159 1 215136332 215136350 GTTGTTCTGGTTGTGGGTC 59 215143925 215143973 TTACAGCAGCTGGACTGAC 60 NA Rattus norvegicus 81 AABR07006042.1 ENSRNOG00000028955 ENSRNOT00000054866 3 1 2 160 1 215136331 215136349 TGTTGTTCTGGTTGTGGGT 60 215143925 215143973 TTACAGCAGCTGGACTGAC 60 NA Rattus norvegicus 81 Fastkd2 ENSRNOG00000023923 ENSRNOT00000002872 3 1 1 80 9 70455291 70455586 GAAGAAATTGGAGATGAAAGCC 58 70455624 70455645 GCTAAGACTTCAAACATATGCC 58 NA Rattus norvegicus 81 LOC100233176 ENSRNOG00000046085 ENSRNOT00000063786 3 1 2 94 6 126636293 126636311 GAAGGAGTTGGTAGCGGAG 60 126632610 126636236 CTTCATCACCATCCAAAGCG 60 NA Rattus norvegicus 81 AABR07035776.1 ENSRNOG00000050059 ENSRNOT00000072653 1 1 1 80 12 21932325 21932345 TCTTCTGCAAACAACAGAAGG 59 21932386 21937333 GTGCTGGTGTTATTGGTCAC 60 NA Rattus norvegicus 81 Cyp2d3 ENSRNOG00000029179 ENSRNOT00000050002 3 1 4 80 7 123627389 123628035 TCATTCCTGAGGTTCTTAACAC 58 123627330 123627349 TCTTCTGACCTTGGAAGACC 59 NA Rattus norvegicus 81 LOC100911693 ENSRNOG00000030704 ENSRNOT00000042983 1 1 1 60 2 104999678 104999697 ACCTTGAAGAGAAGAAGCGT 59 104999637 104999656 GCAAAGATGAACTGAAAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc10a7 ENSRNOG00000011991 ENSRNOT00000015985 1 1 1 85 19 33064395 33073267 AAACAGAGGAGCTGACCAG 59 33064328 33064346 TGTTGTTGGGAAGAAGGCA 60 NA Rattus norvegicus 81 Olr763 ENSRNOG00000042991 ENSRNOT00000046220 2 1 1 66 3 102683154 102683401 AAAGCAAATCGCTCTGCAG 60 102683429 102683449 TCTGAAGTTCCTGAGAGTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Wnt16 ENSRNOG00000005781 ENSRNOT00000007822 2 1 1 70 4 49372163 49372182 GAAAGCAAAGTCCTGCTAGC 60 49372215 49378969 ATTAACTTGGCGACAGCCT 60 NA DesignNoJunction Rattus norvegicus 81 Vom1r72 ENSRNOG00000056406 ENSRNOT00000086909 2 1 1 60 4 87700444 87700462 TGGTCATGTACTGGTTGGA 58 87700481 87700504 TCATACATCCATAACAGGACTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr422 ENSRNOG00000032102 ENSRNOT00000044461 1 1 1 60 3 21060833 21060853 TGACAACCATTACTGTTCCTC 58 21060793 21060811 GAAATGCTTCGATCCACGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Efcab11 ENSRNOG00000053317 ENSRNOT00000082444 1 1 1 80 6 123865746 123889160 CACTTCTGGTGTATCACTTGAG 59 123865687 123865709 CTTATCTCATTCCGATAGAGCTG 59 NA Rattus norvegicus 81 Wbp2nl ENSRNOG00000008038 ENSRNOT00000010606 2 1 1 90 7 123540876 123546456 CATACCAAGCTGCCTATGGA 60 123546509 123546527 GGTGGAACTCCGTATCCTG 60 NA Rattus norvegicus 81 LOC292543 ENSRNOG00000054438 ENSRNOT00000091279 3 1 1 80 1 64629524 64631262 CTCCACTTTAAGGTTCCAGC 59 64631304 64631323 AGTCATTTGCATCATCAGGT 58 NA Rattus norvegicus 81 Pebp4 ENSRNOG00000026247 ENSRNOT00000039454 1 1 1 80 15 51727306 51729679 ATATAATAACAGACTACCAGCCTCC 60 51729714 51729735 CCTGAAGGTAGACAAAGAACTG 59 NA Rattus norvegicus 81 Natd1 ENSRNOG00000050567 ENSRNOT00000075751 2 1 1 191 10 47158440 47164507 CCTCAACGGATGTCATGAC 58 47157533 47157551 TTCTGGATGTACCAGCAGG 59 NA Rattus norvegicus 81 Ccnj ENSRNOG00000014551 ENSRNOT00000019521 1 1 1 80 1 260107090 260107193 GTGTCTCTGCAAGATTATGCC 60 260107233 260107253 GATAATCCTCGAAGAAGCCAC 59 NA Rattus norvegicus 81 Slc17a9 ENSRNOG00000010275 ENSRNOT00000013623 2 1 1 80 3 176243485 176244409 TAAGTTCATGCAGGTCATGG 58 176244452 176244470 GACTTGAGGAAGCTTGTGG 59 NA Rattus norvegicus 81 Tmbim1 ENSRNOG00000014797 ENSRNOT00000084610 2 1 4 80 9 81575708 81575842 TCTTCACCTTTGTGGAACC 58 81575646 81575664 CACCCTGTACTCACTAGGA 57 NA Rattus norvegicus 81 Mpc1 ENSRNOG00000012415 ENSRNOT00000017282 3 1 1 81 1 53027717 53038112 CGGGACTATCTCATGAGTACTC 59 53027657 53027678 TCTTCATGTCATTGATAGCAGC 59 NA Rattus norvegicus 81 Ccdc61 ENSRNOG00000013767 ENSRNOT00000018495 2 1 1 80 1 79809969 79810224 GATGCCAACTTCATTGAAGAC 58 79809909 79809927 TGACTCCAGCATGTTACAG 57 NA Rattus norvegicus 81 Morf4l2 ENSRNOG00000002389 ENSRNOT00000003247 1 1 1 80 X 107396027 107397119 AGAAGGAACATTGTTGGTTGG 59 107395967 107395987 ATTGTTGTCCACGAGTTTGAG 59 NA InUTR Rattus norvegicus 81 Trip12 ENSRNOG00000016963 ENSRNOT00000022822,ENSRNOT00000079452 1 2 2 80 9 92309240 92309260 TTTGATAATGAGCAGCAGAGG 59 92308618 92309199 TAAACTCCGAAATCCTCCGA 59 NA Rattus norvegicus 81 Scn8a ENSRNOG00000005309 ENSRNOT00000080923,ENSRNOT00000008160 1 2 2 80 7 142678479 142678501 CCTTGAGACACTACTATTTCACC 59 142678540 142682077 GGAACATTCCCACAATGGAG 59 NA Rattus norvegicus 81 Rn60_X_0706.1 ENSRNOG00000003035 ENSRNOT00000004052 3 1 1 60 X 69717758 69717777 GTTGACTCCAAGTTCCTGAG 58 69717717 69717735 TTCTTCAGGCCTTGTTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpina1f ENSRNOG00000037762 ENSRNOT00000057322 2 1 1 82 6 127566067 127566902 GACGACAATCTAATCTAAGGATGG 59 127566008 127566029 CATCATTGACTCCACATCATGG 60 NA Rattus norvegicus 81 Olr434 ENSRNOG00000008003 ENSRNOT00000010520 2 1 1 60 3 21363383 21363403 GATATTCCTGCCCATCTACCT 59 21363424 21363443 GATGAGTAGCACCATTCCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col27a1 ENSRNOG00000007657 ENSRNOT00000010333 3 1 1 80 5 79165943 79167440 GGCGGATGGTATCTACTGG 59 79167482 79167502 CCATGTGTAAAGTTGCAGGAG 60 NA Rattus norvegicus 81 Agpat2 ENSRNOG00000019466 ENSRNOT00000026408 3 1 1 80 3 4044911 4045874 CTCTTCACCTCAGGAACGA 59 4044849 4044867 TTTGGTGACATCAGCATCC 58 NA Rattus norvegicus 81 LOC100911027 ENSRNOG00000046250 ENSRNOT00000074549 2 1 1 88 1 54730525 54748641 TGCCTGGAGATTGTACTTGG 60 54730456 54730474 AACATGACCCATCCTTGCA 60 NA Rattus norvegicus 81 LOC684709 ENSRNOG00000046786 ENSRNOT00000074864 2 1 1 60 13 71305990 71306008 TTCAGGTCTCGTCAAAGGT 59 71306031 71306050 AGGAACACCACCAAGATGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pop5 ENSRNOG00000001199 ENSRNOT00000001591 1 1 1 80 12 47138868 47139056 ACATTACATGTGGGAGGTACC 60 47138808 47138827 CAACAAGACCAACAGCTGTC 60 NA Rattus norvegicus 81 RGD1563975 ENSRNOG00000045953 ENSRNOT00000074996 1 1 1 94 X 130009024 130009043 AGGGTTGCTATAAATGTGCA 58 130009100 130009423 CAACTCCACCATCTTCCTG 58 NA InUTR Rattus norvegicus 81 RGD1563975 ENSRNOG00000045953 ENSRNOT00000074996 3 1 1 97 X 130009021 130009041 GCAAGGGTTGCTATAAATGTG 58 130009100 130009423 CAACTCCACCATCTTCCTG 58 NA InUTR Rattus norvegicus 81 Cdc45 ENSRNOG00000050071 ENSRNOT00000072027 3 1 1 80 11 86329454 86330115 GCAAGATACTTCAGGCCCT 60 86330159 86330177 TTTCAAGTTCTTGCCACCC 59 NA Rattus norvegicus 81 Spata16 ENSRNOG00000024521 ENSRNOT00000035263 3 1 1 80 2 112501316 112501334 CATGTTCTGGCTCTGTGGA 60 112501377 112539087 GCTTCTTCAATCATGGCCTG 60 NA Rattus norvegicus 81 Rep15 ENSRNOG00000001840 ENSRNOT00000002518 1 1 1 60 4 181429229 181429251 GAAGAGTTCTGTAACTTGGTAGG 59 181429268 181429289 GCACACCAAAGATGATAAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013425.1 ENSRNOG00000050075 ENSRNOT00000073001 2 1 1 60 2 236822808 236822826 AACACATGGAAACAACCCT 58 236822766 236822786 GTATCTACAGCTCCTTGTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Surf4 ENSRNOG00000060005 ENSRNOT00000071754,ENSRNOT00000078429 1 2 2 80 3 5473684 5473704 TTTGGAATCATCGCACTTCAG 59 5472613 5473072 TCCTAAAGCCAGGTTCCTC 59 NA Rattus norvegicus 81 Ush2a ENSRNOG00000003738 ENSRNOT00000004992 2 1 1 80 13 107252192 107254410 CAGGAACTAAGGTATGTTGTGAC 59 107254448 107254468 GTGCGATGTATTTCTCCTCAC 59 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000012019,ENSRNOT00000060254 2 2 10 80 15 32244450 32425236 ACTTTCTCATGAGAGGAAACAG 58 32425276 32425295 CTAGTGAGGCTCCTTCAGAG 59 NA Rattus norvegicus 81 Morn4 ENSRNOG00000027156 ENSRNOT00000037490 2 1 1 83 1 261324534 261324555 CGGAGTCTTCATTCGATATGAC 59 261324308 261324490 AAAGTCAGCAAGCCAAAGC 60 NA Rattus norvegicus 81 Sympk ENSRNOG00000014353 ENSRNOT00000019814,ENSRNOT00000084985 1 2 2 80 1 79953613 79953995 CGGCTTGGAGAAGAAAGAG 58 79954039 79954057 TTGAAGACCTCCTTCACCA 58 NA Rattus norvegicus 81 LOC100912257 ENSRNOG00000049493 ENSRNOT00000071378 3 1 1 60 4 1697790 1697811 CTCACACCATTTGCATAATGAG 58 1697751 1697772 AAGTAGTGGTTGATTGTGTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 MGC114492 ENSRNOG00000032629 ENSRNOT00000050147 3 1 1 125 X 139261344 139261696 CATTCTTCAAGGCCTGTGAG 59 139261238 139261256 TCAAACTGAGTGCTGTCCA 59 NA InUTR Rattus norvegicus 81 Klhl30 ENSRNOG00000020105 ENSRNOT00000027232 1 1 1 83 9 98496683 98497042 ATGTCTACGTCACAGGTGG 59 98497089 98497107 CTTCCTTCAGTGGGAAGCA 60 NA Rattus norvegicus 81 Padi2 ENSRNOG00000007574 ENSRNOT00000010183 3 1 1 80 5 159439236 159439257 ACCGTCAACTACTATGAAGAGG 59 159439297 159446552 CAGTGAGATCTCAATGGCAG 59 NA Rattus norvegicus 81 AABR07051260.1 ENSRNOG00000026208 ENSRNOT00000035050 1 1 1 80 3 4285469 4285996 GAAGACAGGAATGTCTCAGG 58 4286036 4286057 TTCCATTGAGATTAACTCTGGG 58 NA Rattus norvegicus 81 Serpina5 ENSRNOG00000009855 ENSRNOT00000013138 1 1 1 80 6 127768357 127769269 CTTCAAAGCCAAGTGGCAG 60 127769312 127769331 ATGGTCTTCTTGGGAGTCAC 60 NA Rattus norvegicus 81 Smc5 ENSRNOG00000030572 ENSRNOT00000067796,ENSRNOT00000081866 2 2 2 80 1 240982047 240982065 ACTTGATGGCACTTCAGGA 59 240981908 240982006 CATTAATTGGGTCCATACCCTG 59 NA Rattus norvegicus 81 Ccnd1 ENSRNOG00000020918 ENSRNOT00000088588 2 1 2 89 1 218098403 218098423 AAGATGAAGGAGACCATTCCC 60 218097794 218098352 GTTCCATTTGCTGCACTCC 60 NA InUTR Rattus norvegicus 81 LOC683410 ENSRNOG00000049733 ENSRNOT00000071298,ENSRNOT00000072693 2 2 2 81 7 142759256 142759274 TCCAGGGAAGCAAAGTCTG 60 142759319 142759342 TCCTCGTGGTTCACTTTCC 60 NA Rattus norvegicus 81 Psap ENSRNOG00000000571 ENSRNOT00000000696 3 1 1 81 20 29854623 29854641 CACCAAGGAGGAGATCCTG 59 29854683 29854924 AAATTCATCACACTGCTTCTGG 60 NA Rattus norvegicus 81 RGD1565617 ENSRNOG00000038254 ENSRNOT00000048879 3 1 1 60 19 3326282 3326303 TGGCATTAGTTATATGCACTGG 59 3326324 3326342 GATGAGGAGTTTGGGTTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam133b ENSRNOG00000009163 ENSRNOT00000012253 1 1 1 90 4 27730129 27732645 AGAGAACAACAGACAAAGCT 57 27730058 27730076 GAGTCTGAGCTTGAACTGG 58 NA Rattus norvegicus 81 Olr1250 ENSRNOG00000046504 ENSRNOT00000073845 1 1 1 60 4 1658804 1658825 ACTATTTCTGTGATCTCCTCCC 59 1658846 1658864 TCATTGACATAGGTGCTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Shank2 ENSRNOG00000047651 ENSRNOT00000071235,ENSRNOT00000080442 3 2 2 85 1 215214980 215215787 CAGCCAGAAAGAAAGCTCC 59 215215836 215215854 CAATTCCGCTGTCATGGAC 59 NA Rattus norvegicus 81 LOC100910824 ENSRNOG00000047036 ENSRNOT00000073693 1 1 1 60 13 100214748 100214769 TATCAGCAAAGAACAACAGTGG 59 100214789 100214808 CAGTGTCATCTCAATCTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ece2 ENSRNOG00000001715 ENSRNOT00000044482 1 1 1 80 11 83961506 83961622 ACCTCATTGACAAGATCGGT 59 83961445 83961464 CTACTGCCTTTAGCACTTCC 58 NA Rattus norvegicus 81 Cebpb ENSRNOG00000057347 ENSRNOT00000083876 1 1 1 196 3 164424632 164424650 CTTCTACTACGAGCCCGAC 59 164424810 164424828 AGAGGTCGGAAAGGAAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cebpb ENSRNOG00000057347 ENSRNOT00000083876 2 1 1 197 3 164424632 164424650 CTTCTACTACGAGCCCGAC 59 164424810 164424829 AAGAGGTCGGAAAGGAAGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbmxl2 ENSRNOG00000021946 ENSRNOT00000044538 3 1 1 83 1 171420635 171420654 TTCGTCACCTTCGAGAACC 60 171420700 171420719 CCTTGATGGCTTACCATCCA 60 NA Rattus norvegicus 81 Atp1b1 ENSRNOG00000002934 ENSRNOT00000003932,ENSRNOT00000076578 3 2 2 82 13 82739433 82742022 GCTTCAAACCTAAGCCTCC 59 82739369 82739387 GACAGGTAGGACGTTTGGA 59 NA Rattus norvegicus 81 Cdhr4 ENSRNOG00000029586 ENSRNOT00000050702 1 1 1 80 8 116776577 116776595 CAGTCAAGACTGGGACCTC 59 116776638 116777552 GTCATTGTTGAGGACACCTC 59 NA Rattus norvegicus 81 Olr427 ENSRNOG00000031763 ENSRNOT00000047764 2 1 1 60 3 21209447 21209468 ATCCTTTCATCTATAGCCTGAG 57 21209487 21209507 TCCCTTAACTTCCTCAAACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rrp7a ENSRNOG00000022896 ENSRNOT00000034983 1 1 1 80 7 123985602 123986377 GAACGGGATTCACAAGTGG 59 123985540 123985559 AATGTGTCTACTTCGAGCCT 59 NA Rattus norvegicus 81 Cby1 ENSRNOG00000013892 ENSRNOT00000018787 1 1 1 80 7 120896384 120896402 GGAACTCCTACCATGAACC 57 120896445 120896542 CCCACTAATCACTGAGTCTG 58 NA Rattus norvegicus 81 Ankrd42 ENSRNOG00000009664 ENSRNOT00000068402 2 1 1 80 1 157422354 157425562 GGAGTCTAAGAAGACCATCAC 58 157422294 157422314 AGTTGACACTCTAACTTCTCC 57 NA Rattus norvegicus 81 Rn60_13_0873.1 ENSRNOG00000051337 ENSRNOT00000075901 2 1 1 60 13 82366340 82366358 ACCGATTACATGGCTTTCC 58 82366298 82366319 TGAAGGTGAATCTTGAACTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nudt5 ENSRNOG00000017741 ENSRNOT00000023892,ENSRNOT00000082669 1 2 2 100 17 76399818 76401197 TTTCAGAGGAGTTGATCTCAG 57 76394928 76394946 AAGCTTCACTGTTTCCCAG 58 NA Rattus norvegicus 81 H1fx ENSRNOG00000027722 ENSRNOT00000033687 3 1 1 73 4 119889834 119889852 CCAAGAGAAGGAAGAACCG 58 119889779 119889797 CTTACGGATCGTCTCCACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hpse2 ENSRNOG00000043120 ENSRNOT00000067274 1 1 1 104 1 262040922 262047188 CACCACAACCACAACTATGTC 60 262040838 262040856 GAGCTTGTCCCTGAGAGTC 60 NA Rattus norvegicus 81 Rnf186 ENSRNOG00000017244 ENSRNOT00000023358 3 1 1 60 5 157417597 157417615 TCCTGCCTTTCATCTACCC 59 157417639 157417657 GCTAGGGCAATGACAAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Npr1 ENSRNOG00000014684 ENSRNOT00000020307 1 1 1 80 2 189848107 189848128 CTAGAGAATGAGAGTATCACCC 57 189847951 189848068 TAGAAAGAGCATTCCCTTGAC 58 NA Rattus norvegicus 81 Adamts14 ENSRNOG00000000563 ENSRNOT00000090004,ENSRNOT00000063875 2 2 2 80 20 30838112 30839229 TGCTTGGCTTTCAGAACCT 60 30838050 30838070 CTTGGTCTTGCAGAAGTATGG 59 NA Rattus norvegicus 81 RGD1311783 ENSRNOG00000020076 ENSRNOT00000027196 1 1 1 80 1 266461383 266461401 GATGCCATCTTGCACTCAG 59 266461687 266462431 AATAGCTTCTTGCTGGTACTG 58 NA Rattus norvegicus 81 Nyap1 ENSRNOG00000050511 ENSRNOT00000059602 1 1 1 87 12 21773013 21773031 ATCCACCATGATCGAGGAG 59 21773081 21773846 CTGTGAAATCTCCATTCCGG 59 NA Rattus norvegicus 81 Tmprss11b ENSRNOG00000033910 ENSRNOT00000029805 2 1 1 80 14 23456232 23456251 AAGCTACTCAGAAGTTCCCA 58 23456293 23457308 TAGGACTGTCTCCATCTGAC 58 NA Rattus norvegicus 81 Hspbp1 ENSRNOG00000017795 ENSRNOT00000024251 1 1 1 80 1 72738773 72738791 TAAGCTACTTCGGCTGCTC 60 72738835 72751437 CGGACAAGACAGGAGATGG 60 NA Rattus norvegicus 81 Hspbp1 ENSRNOG00000017795 ENSRNOT00000024251 3 1 1 81 1 72751511 72751529 CAAGTGCAGAAGCTCAAGG 59 72751574 72751694 AAAGGGTTCCTTTGTGCTC 58 NA Rattus norvegicus 81 Fam76b ENSRNOG00000024863 ENSRNOT00000068445 2 1 1 80 8 12357786 12358822 AGTTTGGAACACCTAAGCC 58 12358865 12358884 AATTTGTACAACGCTGACAC 57 NA Rattus norvegicus 81 Col16a1 ENSRNOG00000031475 ENSRNOT00000067663 3 1 1 81 5 148263205 148264194 CCGGTTTCATTTGACCTTCAG 60 148264236 148264255 GTAAGATCTCACAGCAGCCT 60 NA Rattus norvegicus 81 As3mt ENSRNOG00000020081 ENSRNOT00000027223 3 1 1 80 1 266487092 266489956 ACCAAGTCCTGAAGTACGG 59 266489997 266490018 GTGACTTGATGTCTTCTGACAC 59 NA Rattus norvegicus 81 Prss23 ENSRNOG00000017307 ENSRNOT00000080927,ENSRNOT00000023239 1 2 2 60 1 153733414 153733433 AATTTGGTGTACCGCTTCTG 59 153733373 153733393 ACTGCTGATAAAGAAGGTCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim3 ENSRNOG00000018356 ENSRNOT00000024850 2 1 1 80 1 170456566 170456584 GTATGCAGTATCTGCCTGG 58 170450971 170456522 CTGGAGACATCTTTCGCAG 58 NA Rattus norvegicus 81 Cdh16 ENSRNOG00000012222 ENSRNOT00000016419 2 1 1 80 19 569518 569538 CTACAGAAAGCCTGCATACAG 59 569580 570251 AGGGTAGTGGTAGCTTGAG 58 NA Rattus norvegicus 81 Ssx2 ENSRNOG00000049427 ENSRNOT00000071047 1 1 1 80 X 709350 709820 GGCATGTAAGGCATTCGAG 59 709862 709882 GTGATCTTCTCTGAATGGCTG 59 NA Rattus norvegicus 81 Pdlim5 ENSRNOG00000016419 ENSRNOT00000022387 3 1 1 80 2 247933352 247985442 ATCTCTAGTCTGAAAGATGGTGG 60 247933294 247933315 GATTCCATCAATGCTGAGAACC 60 NA Rattus norvegicus 81 Acbd7 ENSRNOG00000016480 ENSRNOT00000064609 3 1 1 110 17 78905879 78906004 CATCAACATTGCATGTCCAG 58 78905596 78905614 GAAATGTAGGCACCCATGG 59 NA Rattus norvegicus 81 Rtn1 ENSRNOG00000004794 ENSRNOT00000006373,ENSRNOT00000072262 1 2 2 80 6 94958727 94959207 GCTTATGGCTGTGGTTTCG 60 94958580 94958600 AGTCCCAGATATTGGTCAACC 60 NA Rattus norvegicus 81 Fgfr2 ENSRNOG00000016374 ENSRNOT00000068183,ENSRNOT00000022253,ENSRNOT00000065448,ENSRNOT00000022331 3 4 4 80 1 200592618 200596353 ACCAATGAGGAATACTTGGAC 58 200592558 200592576 AGAACAAGAGCTCCTTGTG 57 NA Rattus norvegicus 81 Itgb3bp ENSRNOG00000009116 ENSRNOT00000012947,ENSRNOT00000090393 2 2 2 85 5 118510130 118510150 TGGAACTTATCAATTGAGCCC 58 118500888 118510086 TTCTTGTTCCATTTGATGGTCC 59 NA Rattus norvegicus 81 Slc14a1 ENSRNOG00000016753 ENSRNOT00000074572,ENSRNOT00000022598 2 2 2 80 18 74473249 74473270 AAGTAAACTCTTCATGCCTGTC 59 74471902 74473209 AGAGACTTCAACAGCTCCAG 60 NA Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000089233 3 1 8 109 3 100771186 100815562 CTTCATTGAGCCCAGTTCC 59 100815635 100815653 TTTGCTTCTTTCATGGGCG 60 NA InUTR Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000080190 1 1 8 105 3 100787162 100787183 CTGCCTTGATGTTTACTTTGAC 58 100815603 100815624 GCAACCGAAGTATGAAATAACC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1559731 ENSRNOG00000004265 ENSRNOT00000005659 3 1 1 80 X 4734790 4737955 CATCCTGCAGATCTTCCCT 59 4737997 4738017 GTACTGACCAGGAATCTACCA 59 NA Rattus norvegicus 81 Agtr1b ENSRNOG00000010640 ENSRNOT00000014178 3 1 1 104 2 105224193 105224211 TTGAAAGAAGCCCAGAGCT 59 105151012 105151032 TTCAGTAGAGGAGTTAAGGGT 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tnfaip3 ENSRNOG00000049517 ENSRNOT00000074583 2 1 1 81 1 14405972 14405990 GTACTTGATGGTGCTGGAG 58 14405591 14405927 TTCATCTAACTTGGCAGCA 57 NA Rattus norvegicus 81 Mmp14 ENSRNOG00000010947 ENSRNOT00000075610 1 1 1 80 15 33081836 33081854 ACGGACAAGATTGATGCAG 58 33081895 33082415 GAAGCGGTAGTACTTATTTCCC 59 NA Rattus norvegicus 81 Brat1 ENSRNOG00000001236 ENSRNOT00000064726 2 1 1 85 12 16021072 16022225 TGAAACTTCAGCATTGTCCC 59 16021006 16021024 GGTAGCTTTCAGGATGCAG 58 NA Rattus norvegicus 81 Olr1408 ENSRNOG00000047426 ENSRNOT00000040534 3 1 1 60 10 36518030 36518049 CCCTTCATTTACAGCCTGAG 58 36518072 36518090 TATGGAGGAGCCTTGTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dis3l2 ENSRNOG00000018931 ENSRNOT00000025779,ENSRNOT00000084590 1 2 2 80 9 94159916 94160629 ATACAGCAGGTCATCACCA 58 94160672 94160691 GATAGCACTGTACTTGAGGG 58 NA Rattus norvegicus 81 Crtc2 ENSRNOG00000056337 ENSRNOT00000092144 3 1 1 80 2 189622235 189622255 CTCACACTATGACCCATTTGG 59 189622297 189622667 GAGGTGAGTGAAGTCCTGG 59 NA Rattus norvegicus 81 Apbh ENSRNOG00000030828 ENSRNOT00000066292 3 1 2 75 1 89785902 89785920 TTGACAGACGAAGACAAGC 58 89786709 89786727 GTACCCATCAACACAAGGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07049184.1 ENSRNOG00000046140 ENSRNOT00000071169 1 1 1 96 5 108935617 108935638 TGGTGATAATCTAGTTGCTCTC 58 108935694 108935752 GTAGTAGGCGTAATGGTCAC 58 NA Rattus norvegicus 81 Alkbh4 ENSRNOG00000001428 ENSRNOT00000001939 3 1 1 94 12 23569659 23570539 GGAGGAAGCAGGACTATGG 59 23569583 23569602 TACCTTCTGGCTAAAGCCAG 60 NA Rattus norvegicus 81 Mapk7 ENSRNOG00000002412 ENSRNOT00000057864 2 1 1 80 10 47772800 47772818 ACACGACAATATCATCGCC 58 47771460 47772758 AGTACCACGTAGACAGATCTG 59 NA Rattus norvegicus 81 AABR07027819.1 ENSRNOG00000031902 ENSRNOT00000041103 2 1 1 60 17 45286299 45286318 GGTGAACTCAGAAGACAAGG 58 45286258 45286279 ATAATTGGCCCTAATAGCTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psmd8 ENSRNOG00000037580 ENSRNOT00000027937 1 1 1 80 1 88117370 88118021 CTATGCCAAGAAGCGAGGT 60 88117308 88117326 CTGTCTTCTGGCTTCTGCT 60 NA Rattus norvegicus 81 Tatdn2 ENSRNOG00000042482 ENSRNOT00000038964 2 1 1 96 4 145665576 145665594 CCTTGGTAATTCACTGCCG 59 145665654 145667760 GTGAAGCAGTGCCTATGGA 60 NA Rattus norvegicus 81 Fbln5 ENSRNOG00000050539 ENSRNOT00000007004,ENSRNOT00000084815 2 2 2 80 6 125664859 125668801 GTGCCTAGATATTGATGAATGTCG 60 125664802 125664822 CACGTACAGGAATAGGATCCA 59 NA Rattus norvegicus 81 Pwwp2a ENSRNOG00000003936 ENSRNOT00000067013 2 1 1 80 10 29330390 29330410 TTACAGTGTCTGACAGACCAC 60 29330451 29333226 CTAATGTCTTTGTGCTGCCC 60 NA Rattus norvegicus 81 Ahsp ENSRNOG00000020165 ENSRNOT00000027297 1 1 1 80 1 199720366 199720389 TCAGAGCAATAAGGATCTGATCTC 60 199720427 199720674 AGAGGGTCATCAAAGACCTG 59 NA Rattus norvegicus 81 Htr2c ENSRNOG00000030877 ENSRNOT00000065293,ENSRNOT00000090922 2 2 2 85 X 118289470 118289488 TCCTATTGAGCATAGCCGG 59 118289532 118314560 CTGAAACTCCTATTGATATTGCCC 60 NA Rattus norvegicus 81 Hist1h2ac ENSRNOG00000059748 ENSRNOT00000077571 3 1 1 124 17 44794236 44794255 GTAAGGGCAACTATTCGGAG 58 44794342 44794360 CGTCTTCTTGTTGTCCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrg1 ENSRNOG00000049918 ENSRNOT00000074993 1 1 1 60 9 10952414 10952432 CAAACATAGAGGAGCAGCC 58 10952456 10953417 CAGGAGGAACAGGGTTCTC 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Abcc5 ENSRNOG00000029178 ENSRNOT00000002316,ENSRNOT00000091595,ENSRNOT00000048306 1 3 3 124 11 84425645 84426262 TGTGAACTGCAGAAGACTAGAG 60 84426347 84426365 ACACGATGGACAGGATGAG 59 NA Rattus norvegicus 81 Cxcr3 ENSRNOG00000003305 ENSRNOT00000004406,ENSRNOT00000076210 2 2 2 80 X 71615838 71616845 ACCTTGAGGTCAGTGAACG 60 71615776 71615795 AATCGTAGGGAGATGTGCTG 60 NA Rattus norvegicus 81 Rsph6a ENSRNOG00000061526 ENSRNOT00000090515 2 1 1 89 1 79960261 79962052 AACCTCAGCCTGTATGAGC 60 79962105 79962123 CAGAGACTCCAGGATGGAC 59 NA Rattus norvegicus 81 LOC100910682 ENSRNOG00000050481 ENSRNOT00000071629 2 1 1 60 5 137786048 137786067 CATTGTCACCTTGATCCACC 59 137786088 137786108 ACTGAGGAAGAAGTACATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911795 ENSRNOG00000022462 ENSRNOT00000030579 3 1 1 80 15 57715837 57715858 GGATATTCTGTCTCCCTAAGAG 57 57715897 57717513 CAGTATGAGTTTGGTAACCGA 58 NA Rattus norvegicus 81 Gnaz ENSRNOG00000001313 ENSRNOT00000001779 2 1 1 66 20 14595035 14618792 TATGAGGACAACCAGACGA 58 14594987 14595005 TGTTGTTGCAGATGGAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Tbp ENSRNOG00000001489 ENSRNOT00000002038 2 1 1 80 1 57498759 57504817 CTGAATATAATCCCAAGCGGT 58 57504858 57504877 CAGAACTGAAGATCAACGCA 59 NA Rattus norvegicus 81 Ublcp1 ENSRNOG00000004477 ENSRNOT00000006063 3 1 1 80 10 30106175 30106196 CTCAGTACCTCAAGGAGATAGC 60 30104676 30106138 TCTTAGATAGATACCGTTCCCAG 59 NA Rattus norvegicus 81 Olr546 ENSRNOG00000047728 ENSRNOT00000046809 3 1 1 60 3 75184560 75184579 GTATGTTACTTGGGTGGCCT 60 75184519 75184541 CCAGTCTGAGTAAACCTATTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Epha5 ENSRNOG00000002024 ENSRNOT00000043938,ENSRNOT00000002793,ENSRNOT00000067439 1 3 3 80 14 25934963 25941092 CCAATCAGGATGTGATCAAGG 59 25941134 25941152 ATTGATAGAGGGCAGCAGG 59 NA Rattus norvegicus 81 Tmem229a ENSRNOG00000039464 ENSRNOT00000060476 3 1 1 60 4 52349231 52349251 CCGCTTAATTTCATGGGTCTC 60 52349191 52349210 CACTAAGAAACAGCCAACCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fcamr ENSRNOG00000004393 ENSRNOT00000029694 3 1 1 86 13 47550775 47551575 GAGAGGACCTCTCAGAAGAC 59 47551624 47551642 CTCACCAGGGAGCTTATCC 59 NA Rattus norvegicus 81 Cdr2l ENSRNOG00000025815 ENSRNOT00000035865 2 1 1 80 10 103942370 103942388 AGAAACAAGGAGCTGGAGG 59 103942432 103942710 GGTCAGGTACTCGATCTCC 59 NA Rattus norvegicus 81 Asz1 ENSRNOG00000060343 ENSRNOT00000091311 1 1 1 80 4 45406849 45406870 GAGGAACAAGTCTTGAAGTGTG 60 45375958 45406811 AGTCATAAGTCTCCTACAAGCA 59 NA Rattus norvegicus 81 Nid1 ENSRNOG00000002461 ENSRNOT00000003349 1 1 1 80 17 90555895 90556707 GATTGGAAGACGAACTCGG 58 90555833 90555851 GGTATGCTTATGTGGGTGG 58 NA Rattus norvegicus 81 Rcor3 ENSRNOG00000046445 ENSRNOT00000073588 1 1 1 80 13 110856312 110863855 CTGAATTCGATCCAGGTGC 59 110856250 110856271 GGATACTGTGATAAGGAGACCA 59 NA Rattus norvegicus 81 LOC317588 ENSRNOG00000030580 ENSRNOT00000049046 3 1 1 80 X 137935373 137935392 TAGGCAAATGGTTGGAACTG 59 137935432 137938782 GGGTTTCCATTTCATGTATGTC 58 NA Rattus norvegicus 81 Mpped2 ENSRNOG00000004863 ENSRNOT00000065168,ENSRNOT00000080416 3 2 2 88 3 97774668 97774686 GGGACATCCTTCTCCACAC 60 97774738 97813069 TGGCAGGTTTCCTAACCAG 60 NA Rattus norvegicus 81 Polr2j ENSRNOG00000001430 ENSRNOT00000001941 1 1 1 84 12 23588300 23590059 ACATCATTAAATCGCAGCTG 57 23588235 23588253 ATGATCTTGTGCTCCAAGG 58 NA Rattus norvegicus 81 Vom1r96 ENSRNOG00000058628 ENSRNOT00000080669 2 1 1 60 4 121870829 121870848 GGTCTAAGCCCATTGATCTG 58 121870871 121870889 ACAAGCAGCATTAGTTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ipo7 ENSRNOG00000010427 ENSRNOT00000014002 3 1 1 80 1 174690077 174691263 TGAGACTGAGGAACTAGGG 57 174691305 174691325 GCTTGTTTAGCTAGGATCTCC 58 NA Rattus norvegicus 81 Nkx2-2 ENSRNOG00000012728 ENSRNOT00000017364 3 1 1 106 3 141409631 141410629 CCTCCAATACTCCCTGCAC 60 141409543 141409561 TCTCCTTGTCATTGTCCGG 59 NA Rattus norvegicus 81 AABR07069698.1 ENSRNOG00000050232 ENSRNOT00000007903 3 1 1 68 8 37704183 37704202 CTGCAATATGGTACATCGCT 58 37702374 37704155 GTCAAGACTCAATAAAGAGCAC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tctex1d1 ENSRNOG00000023100 ENSRNOT00000038410 3 1 1 96 5 122512578 122512596 TCTGTACAGTGTCCCACTC 58 122512656 122519360 TTGGTGGGACCTAATTGGT 59 NA Rattus norvegicus 81 LOC100910308 ENSRNOG00000046308 ENSRNOT00000002890 3 1 1 80 14 33974001 33974025 AGATAATGATTCCTGGAGACTATGG 60 33973626 33973967 TCTTTGAGATCCCGATAAGACTG 60 NA Rattus norvegicus 81 Sestd1 ENSRNOG00000012603 ENSRNOT00000016837 2 1 1 80 3 64076839 64076859 CCAGTTGACAGAAGACTTTGG 59 64075416 64076798 AACTTCTCAAAGACCAGCCT 59 NA Rattus norvegicus 81 Olr578 ENSRNOG00000050566 ENSRNOT00000042725 1 1 1 60 3 75752169 75752190 ATGTGTCTTTGTAGATGCTGAG 59 75752130 75752149 CTTGTATCGATCAAAGGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adora3 ENSRNOG00000015788 ENSRNOT00000021236 2 1 1 80 2 208531471 208531490 CTTCCATCATGTCCTTGCTG 59 208531528 208533431 TGGTAACCGTTCTATATCTGACTG 60 NA Rattus norvegicus 81 RGD1563782 ENSRNOG00000042711 ENSRNOT00000063878 1 1 1 81 11 86918848 86918951 ATTACTGAGGTGTGGGACG 59 86918785 86918803 TTTGACGACCTACCAGGAG 59 NA Rattus norvegicus 81 LOC679087 ENSRNOG00000016330 ENSRNOT00000061333 3 1 1 60 5 25253971 25253993 CCTTCAAGGAGGTTAAATGACAG 60 25254012 25254031 TTCTGGGAGACTTTGAACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tdp1 ENSRNOG00000003831 ENSRNOT00000005167 2 1 1 80 6 123902475 123902493 TACAACTCCAAAGCCCTCC 59 123904978 123906081 GTAGTTAAACTGAGCTGAAGAGAC 59 NA Rattus norvegicus 81 Ppara ENSRNOG00000021463 ENSRNOT00000030082,ENSRNOT00000078928 2 2 2 80 7 126661150 126667203 TCATCACAGACACCCTCTC 58 126667247 126667265 GGGACTCATCTGTACTGGT 58 NA Rattus norvegicus 81 Cchcr1 ENSRNOG00000050233 ENSRNOT00000081015,ENSRNOT00000084918 3 2 3 81 20 3736929 3736947 GAACAAGTCCCTCCTGAGG 59 3736723 3736885 CCTTCAAGTGCTTCAAGGTG 60 NA Rattus norvegicus 81 Stath ENSRNOG00000054677 ENSRNOT00000085234 1 1 1 83 14 21958273 21959058 GGTCTCCATGATTACTGCTG 58 21957140 21957158 ACATATCGGCGATAACGTC 58 NA Rattus norvegicus 81 Fam227a ENSRNOG00000021795 ENSRNOT00000078320,ENSRNOT00000056179,ENSRNOT00000056178 1 3 3 80 7 120874277 120874299 GACTATGAGTTGGAGAAGAAGTC 59 120873685 120874241 CTCTTCCTTCAGTTTCTTGACTC 59 NA Rattus norvegicus 81 Fam227a ENSRNOG00000021795 ENSRNOT00000078320,ENSRNOT00000056179,ENSRNOT00000056178 2 3 3 80 7 120874285 120874306 AATTGAGGACTATGAGTTGGAG 58 120873692 120874245 TTCAGTTTCTTGACTCCGTC 58 NA Rattus norvegicus 81 Cmtm3 ENSRNOG00000010691 ENSRNOT00000014234 3 1 1 256 19 838011 838033 GAAATAGAGAAGACAGACTGGAC 59 834879 837530 AATGAATGAAAGGCCCGAC 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Caly ENSRNOG00000018337 ENSRNOT00000024765,ENSRNOT00000089729 1 2 2 98 1 212539865 212539883 TTTGCTATGGCACTTCTGG 58 212538619 212539803 GATCTTGTGCCGAAGTAGG 58 NA Rattus norvegicus 81 AABR07001888.1 ENSRNOG00000060716 ENSRNOT00000071177 3 1 1 83 1 61220187 61220205 TCCCTTTCTCCTCATGAGC 59 61220246 61220273 CTAGAGTCTTTGTGAAACCTATTCC 59 NA Rattus norvegicus 81 LOC100911147 ENSRNOG00000042719 ENSRNOT00000045085 3 1 1 80 1 71629617 71629897 ATGGCTTTCAAGATCAGTACTC 58 71629936 71629956 AATGGGAATGACCAAGTTAGG 58 NA Rattus norvegicus 81 Abr ENSRNOG00000056837 ENSRNOT00000080703 1 1 1 80 10 64604371 64604760 TCGGAATGGAAAGAGTTACCT 59 64604311 64604332 TGTAGTTTCTGAATCGCTTCTC 59 NA Rattus norvegicus 81 Gbp1 ENSRNOG00000023943 ENSRNOT00000045855 2 1 1 80 2 248403784 248404363 AAATGAAATTAGGGTCTCGGC 59 248404405 248404423 AGCAACGGTTAGATGACAC 58 NA Rattus norvegicus 81 Frs3 ENSRNOG00000014328 ENSRNOT00000019404 1 1 1 150 9 15302481 15303279 AGTTCAAGGTGACAAATGTGG 59 15302351 15302369 TTGGAGTCGTAGCCATAGC 59 NA Rattus norvegicus 81 Potec ENSRNOG00000016992 ENSRNOT00000052342 1 1 1 80 17 89602725 89602744 GATTGAATTGCAAGACCCTC 57 89586173 89602685 TCTAGTTCAGATTCTGATCTGC 58 NA Rattus norvegicus 81 Mpped1 ENSRNOG00000010834 ENSRNOT00000014720 1 1 1 80 7 124747113 124749169 TCCATGAAGGGTATGGAGTC 59 124749211 124749230 CAGGCTGATAGTTCACAGTG 58 NA Rattus norvegicus 81 Adamtsl4 ENSRNOG00000049385 ENSRNOT00000074156 3 1 1 81 2 197808717 197808736 AAGATCCTGTGGATTCCTGC 60 197808478 197808675 CTCGAAGTGCAAGGTAATTGG 60 NA Rattus norvegicus 81 Derl1 ENSRNOG00000005551 ENSRNOT00000007484 1 1 1 80 7 97759698 97759716 AGCTCGCTATTATCAGCCC 59 97750826 97759654 TGAACGGCCTCCATATCTG 59 NA Rattus norvegicus 81 Ucn3 ENSRNOG00000017759 ENSRNOT00000023887 3 1 1 101 17 69960168 69965615 AAGTCCTCTTACAGGGAGC 58 69965679 69965698 TGTAGAACTTGTGGGAGAGG 59 NA InUTR Rattus norvegicus 81 Dynlt3 ENSRNOG00000003611 ENSRNOT00000004808 3 1 1 92 X 14635107 14635453 ATACAACATCTGATGGCACC 58 14635034 14635055 GTTATAGGACAATTGCTACTGC 57 NA Rattus norvegicus 81 Tlr5 ENSRNOG00000022067 ENSRNOT00000004821 3 1 1 60 13 101384699 101384717 TATCTCCAACATCCAGGCA 58 101384739 101384759 TCTGCTTACTAGACATACCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pkmyt1 ENSRNOG00000003657 ENSRNOT00000004936 1 1 1 83 10 13069753 13069771 GGAGATCCTCGCTACATGG 59 13069818 13070477 GATGGTGAGACCCAGACTG 60 NA Rattus norvegicus 81 RGD1564664 ENSRNOG00000055564 ENSRNOT00000088555 2 1 1 94 3 82855483 82855501 CAAGAAGTCGTTCCTGCAG 59 82855407 82855425 TCCTCAGTTTGCAGCTACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000078064,ENSRNOT00000087017,ENSRNOT00000013961 2 3 8 81 6 128053949 128053968 TAAGAAAGTCTTCTCCCAGC 57 128054012 128055007 CTTGTGGACCACTTGAGAG 58 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000033897 2 1 8 80 6 127958483 127963479 GTATCAAGTCCTACTAAAGAGCC 58 127963515 127963537 GGTATGAGGTCTTCTATGAAGGT 59 NA Rattus norvegicus 81 Olr215 ENSRNOG00000050698 ENSRNOT00000036261 2 1 1 60 1 170888061 170888079 CAGGAAGAAAGCCCTTGTC 59 170888103 170888121 CCCATACCACATTCCAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apob ENSRNOG00000005542 ENSRNOT00000046811,ENSRNOT00000007371 1 2 2 80 6 33191101 33191119 AGATCGTGTCTCCAAGGTC 59 33191162 33192484 ATTCCATTCACCATGTCCTG 58 NA Rattus norvegicus 81 LOC361646 ENSRNOG00000016635 ENSRNOT00000022365,ENSRNOT00000083248 2 2 2 80 1 197259444 197259462 CTACTACATTGGCCTCACG 58 197259506 197261529 GCAGCAATATTGTTCTGGG 57 NA Rattus norvegicus 81 RT1-N3 ENSRNOG00000000795 ENSRNOT00000001035 2 1 1 80 20 3169650 3170157 AAGAAGGCAGGTGAAAGAG 57 3170322 3170342 CACAACAATCTTGCTAGAGTC 57 NA Rattus norvegicus 81 Net1 ENSRNOG00000017765 ENSRNOT00000023945 2 1 1 80 17 70016241 70016389 ATCCCTCTACACGAAGATCTG 59 70016430 70016449 AATGTGACCGATCTGTTCCA 60 NA Rattus norvegicus 81 Nsg2 ENSRNOG00000020644 ENSRNOT00000028069 2 1 1 80 10 15909758 15909777 ACAAGAACAGAATACCAGCC 58 15872012 15909716 AATGGTGACCGTAAATTCGG 59 NA Rattus norvegicus 81 Nsg2 ENSRNOG00000020644 ENSRNOT00000028069 3 1 1 80 10 15909757 15909776 CAAGAACAGAATACCAGCCG 59 15872011 15909716 GAATGGTGACCGTAAATTCGG 60 NA Rattus norvegicus 81 Notum ENSRNOG00000036680 ENSRNOT00000054947 2 1 1 80 10 109835231 109835250 CCAGTTCAAGGAAGGAGAGG 60 109834738 109835188 ACTACGAACACTGGACAGC 60 NA Rattus norvegicus 81 Hnrnpa0 ENSRNOG00000039876 ENSRNOT00000061231 3 1 1 67 17 6910015 6910033 GGTGAAGAAGCTGTTCGTG 59 6910064 6910082 AGAAGTGCTCGATCAGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065406.1 ENSRNOG00000005718 ENSRNOT00000007522 1 1 1 80 6 125864339 125864357 AAAGACTGAAGGCCAAGAG 57 125864402 125864420 TAAGAGTCTACCAGGCCAG 58 NA DesignNoJunction Rattus norvegicus 81 LOC684683 ENSRNOG00000033994 ENSRNOT00000042537 1 1 1 60 3 73335631 73335650 CTTGACCTTCAGAATGACCT 57 73335673 73335691 GTCAGCACAGTAGAAGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027458.1 ENSRNOG00000049193 ENSRNOT00000074609 1 1 1 60 17 31947576 31947597 TCATCTATCAGGTTTCCAACAG 58 31947537 31947555 GACCCACTACCACTGAACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krr1 ENSRNOG00000004035 ENSRNOT00000063917 2 1 1 80 7 54756257 54758807 TGAGAACCAAGATGAGGGA 58 54758851 54758869 CTGGGATTGTCCTCTTTGG 58 NA Rattus norvegicus 81 Cdk5rap2 ENSRNOG00000005788 ENSRNOT00000083340,ENSRNOT00000007710 2 2 2 80 5 86427117 86427135 TGGAGAAGCTGTTTCTCCA 59 86417539 86420110 CAGTTCTTAACCTCCTTAGCAG 59 NA Rattus norvegicus 81 B9d1 ENSRNOG00000047790 ENSRNOT00000075073,ENSRNOT00000084944 2 2 2 88 10 47787643 47787661 CAAGATGTACGGCAAGCAC 60 47787713 47789125 AGTACAATTTGTGGCCAGC 59 NA Rattus norvegicus 81 Samd7 ENSRNOG00000027995 ENSRNOT00000033449 2 1 1 80 2 116247202 116247222 TTACAGAACAGCATCTTCGAG 58 116243555 116247161 CATGCTGAGATACCTGAGAC 58 NA Rattus norvegicus 81 Zg16 ENSRNOG00000016857 ENSRNOT00000022758 1 1 1 80 1 198484201 198485178 ATAATAGGTCTCCAGGTGCG 59 198484140 198484159 AAAGATCTCCTCCAGGTCTC 58 NA Rattus norvegicus 81 Gng8 ENSRNOG00000016701 ENSRNOT00000090417 1 1 2 86 1 78818873 78818891 GACCTACGCCAAATGTGAG 59 78818941 78821692 GTTGGACATGGCTTGTCAC 60 NA InUTR Rattus norvegicus 81 Slc35f1 ENSRNOG00000000412 ENSRNOT00000000468 3 1 1 83 20 34391704 34393693 GAATTCAGTTAGCCATCATGGA 59 34401193 34401212 TAAAGCCAACATACAGCAGC 59 NA Rattus norvegicus 81 Apbb1ip ENSRNOG00000017803 ENSRNOT00000024272 2 1 1 80 17 90146494 90149134 ATCTCTTGACCCAGAGTTTAGG 59 90146435 90146457 CACTGAAGTTAAACTCTTCTCGG 60 NA Rattus norvegicus 81 Tmem200b ENSRNOG00000032018 ENSRNOT00000047917 1 1 1 60 5 150080735 150080753 CATGTGATCATCACGGTGC 59 150080777 150080795 GGTCCAGAGACTTGGAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lhx1 ENSRNOG00000002812 ENSRNOT00000003799 2 1 1 81 10 71848576 71848596 AATGTAAATGCAACCTGACCG 60 71846841 71848534 CCGAAACATCGGAAGAAGTC 59 NA Rattus norvegicus 81 Tmem175 ENSRNOG00000000044 ENSRNOT00000000050 2 1 1 80 14 2092041 2092062 GATGCCTTACTATCCATCATCG 59 2091026 2091831 GTCAAACTGCTGTTCTGGT 58 NA Rattus norvegicus 81 Olr854 ENSRNOG00000014263 ENSRNOT00000019099 1 1 1 60 5 75909594 75909615 AAGCCTTCTTCATCAAACTCAC 59 75909555 75909573 GCACTCCATAAAGCAACGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sec24a ENSRNOG00000004563 ENSRNOT00000090475,ENSRNOT00000006356 1 2 2 80 10 37164357 37166077 GGCTTCTCTAGGCTGTATCTC 60 37164297 37164315 ACTGGATTGTGCTGATGGT 59 NA Rattus norvegicus 81 Wbscr22 ENSRNOG00000033700 ENSRNOT00000044449 3 1 1 80 12 24677378 24677861 AGCAAAGAAGTTCTACCTCTG 58 24678162 24678180 TCTGCTTCCTGACTTTCAG 57 NA Rattus norvegicus 81 Ist1 ENSRNOG00000015144 ENSRNOT00000020365 2 1 1 82 19 41983271 41983591 CTGTGAATGATAGGCTAATGC 57 41983632 41983653 GGCAATTTCAATCAGGTATCTC 58 NA Rattus norvegicus 81 Als2cr11 ENSRNOG00000012637 ENSRNOT00000017517 3 1 1 80 9 65841299 65841318 GAAGAGCTTGAAAGAACGAC 57 65834000 65835128 ATCACTGTAATCCACTAACTCG 58 NA Rattus norvegicus 81 Rn60_10_0627.1 ENSRNOG00000011753 ENSRNOT00000015673 2 1 1 60 10 62967480 62967501 GTCACAACAGTTAAGAACAAGG 58 62967441 62967460 TCTCAGACACATAGATGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lipg ENSRNOG00000018694 ENSRNOT00000025257 2 1 1 80 18 70924383 70924402 GAGCCTCTATTGTTGCTTCC 59 70920639 70924341 GGTTTATGGTGCTCATCTCG 59 NA Rattus norvegicus 81 Zfp830 ENSRNOG00000007578 ENSRNOT00000009970 3 1 1 60 10 70119053 70119072 ATCAGATGGACAAAGAGTGG 57 70119093 70119113 GAGATAGTGTTGACTTGCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mynn ENSRNOG00000027923 ENSRNOT00000010344,ENSRNOT00000078148 2 2 2 87 2 116403807 116407090 TCATGCAAGGAAACACAGTG 59 116403739 116403757 ATGATAGGTCAGGGTGCTG 59 NA Rattus norvegicus 81 Lax1 ENSRNOG00000028250 ENSRNOT00000029533 2 1 1 142 13 50164806 50165666 AGGTCAAGCAACTTAGAAAGAG 58 50165768 50165787 TTCTTGTGATCTCTGGAGGG 59 NA InUTR Rattus norvegicus 81 Zfp951 ENSRNOG00000037421 ENSRNOT00000048419 2 1 1 80 14 6358610 6358630 GATCCTTCCCAGAAGAGTCTC 59 6358353 6358570 TTCCCAGTAAGAGCCTATAGC 59 NA Rattus norvegicus 81 RGD1308117 ENSRNOG00000008351 ENSRNOT00000011277 1 1 1 80 15 51837355 51837373 GTAGGAGAACAGGAGTCCA 58 51836933 51837311 CTCCATACTACCCACCTCC 58 NA Rattus norvegicus 81 Usp46 ENSRNOG00000002106 ENSRNOT00000002879,ENSRNOT00000083100 2 2 2 80 14 36748242 36748261 CAGAAACGCTGTGTAGTGAG 59 36748302 36750700 TTACCCTCATCCTCTTCTGAG 58 NA Rattus norvegicus 81 Rhobtb1 ENSRNOG00000000633 ENSRNOT00000000784,ENSRNOT00000087085 2 2 2 80 20 20656056 20656075 CTGATCTGTAGTTGCGAGTG 59 20650350 20656013 TGGAAGGTGAACCTCACTG 59 NA Rattus norvegicus 81 Spon2 ENSRNOG00000046246 ENSRNOT00000075130 1 1 1 90 14 82869026 82869629 TGACTGAGATAACCGCCTC 59 82869683 82869701 GTCACTTTGGCAATGGGTG 60 NA Rattus norvegicus 81 LOC100909423 ENSRNOG00000046510 ENSRNOT00000071070 2 1 1 60 3 158985592 158985613 TTCATTGACCTCTGTTACTCCA 59 158985553 158985571 TTGCCACAAAGTTCACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Xk ENSRNOG00000003749 ENSRNOT00000051135,ENSRNOT00000092143 3 2 2 82 X 14506269 14530135 CATTACTACTGGAAGATGCGT 58 14530179 14530197 TGGCTAAGATGTTGCAACG 59 NA Rattus norvegicus 81 Rbm28 ENSRNOG00000005468 ENSRNOT00000077079,ENSRNOT00000064007 3 2 2 80 4 56437991 56438009 TGATCAGCTGGAAGAGCTG 60 56434572 56437950 CATGCTTTACTCCCTTTCTCTG 59 NA Rattus norvegicus 81 Slc35a1 ENSRNOG00000008908 ENSRNOT00000011969,ENSRNOT00000081150 3 2 2 81 5 50131602 50131620 GTCACTGGTGTATGCTGTG 59 50131237 50131558 ATAGGTCACCTGGTACACTG 59 NA Rattus norvegicus 81 Tgif2-ps1 ENSRNOG00000030925 ENSRNOT00000048929 1 1 1 60 17 49516678 49516698 GATGGCAAAGACCCTAATCAG 59 49516720 49516738 CCACATCTGAGGCCTTACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r6 ENSRNOG00000052154 ENSRNOT00000079924 1 1 1 60 1 60045596 60045617 TGCTATACTTTATGGACACAGG 58 60045637 60045656 GAAGGAGGTATGAGAGTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atg14 ENSRNOG00000011873 ENSRNOT00000016274 2 1 1 80 15 24348166 24349310 AAAGCTGTGCAACAGTGAG 59 24348104 24348123 TTTGCGTTCAGTTTCCTCAC 59 NA Rattus norvegicus 81 Tufm ENSRNOG00000018604 ENSRNOT00000025203 1 1 1 80 1 197905857 197905878 TTGAAGAAAGGAGATGAGTGTG 58 197905918 197906048 GTGGAACATCTCAATGCCTG 59 NA Rattus norvegicus 81 Dhx38 ENSRNOG00000014619 ENSRNOT00000019810 2 1 1 80 19 42119451 42119824 CACCATCATCAGAGACAACAG 59 42119866 42119884 AAGTACTGGGTCAGCTGAG 59 NA Rattus norvegicus 81 Ranbp6 ENSRNOG00000053859 ENSRNOT00000078998 3 1 1 60 1 247985328 247985347 ACATTCCTCTTAGATGCCGT 59 247985287 247985305 CAGCCATTTGTCTCACCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arl6ip5 ENSRNOG00000006818 ENSRNOT00000010185 1 1 1 81 4 129574466 129574484 GTGTAGTGAGCAATCTGCT 58 129574529 129593038 CTCAGAAACCCAACGACTG 59 NA Rattus norvegicus 81 LOC688320 ENSRNOG00000046260 ENSRNOT00000072947 3 1 1 80 10 109912732 109912844 AGGTATCCCAGATGGTAGC 58 109912670 109912689 GAGCAACTATTCTGGAGACG 58 NA Rattus norvegicus 81 Col26a1 ENSRNOG00000001422 ENSRNOT00000059530,ENSRNOT00000080068 3 2 2 121 12 22970513 22970531 TAGACACAGTGCTGACTGG 59 22972766 22973714 CTCATCCACCATACCCTGG 59 NA Rattus norvegicus 81 Npff ENSRNOG00000047739 ENSRNOT00000074497 3 1 1 108 7 144127450 144127468 GACAGGATCCAGACTCCTG 59 144127258 144127379 CATTTCTGCCAAACCTCTGG 60 NA Rattus norvegicus 81 Tsnaxip1 ENSRNOG00000018954 ENSRNOT00000025686 3 1 1 80 19 37812359 37812477 GATCATTGTTTACTGAGGATGAGG 59 37812512 37812534 CCTTCTCACTGTTATACTGTTCC 59 NA Rattus norvegicus 81 Aldoa ENSRNOG00000052802 ENSRNOT00000088473,ENSRNOT00000087928,ENSRNOT00000080988 2 3 3 81 1 198230548 198230566 ACCAGAAGGCAGATGATGG 60 198230020 198230506 CCCTTATCTACCTTAATGCCCA 60 NA Rattus norvegicus 81 Pcsk4 ENSRNOG00000016405 ENSRNOT00000022358 2 1 1 80 7 12247617 12247635 CAAAGGTTACCAGGAGGCT 59 12247675 12247914 TACTGGTCATCAGGAAAGATCTG 60 NA Rattus norvegicus 81 Zfp579 ENSRNOG00000016608 ENSRNOT00000022349 2 1 1 211 1 72399210 72399228 AGGGAAGGAAGAAAGGAGC 59 72400431 72400449 AGTAAGGGAAGCGGAAGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Atp2b4 ENSRNOG00000003031 ENSRNOT00000046273,ENSRNOT00000004078 1 2 2 80 13 50128475 50129628 TGGTGAAAGGTATCATTGACAG 59 50129667 50129687 GTCCATCATTGGTTCCATCAC 59 NA Rattus norvegicus 81 Snrpep2 ENSRNOG00000034206 ENSRNOT00000040164 2 1 1 61 1 141503966 141503989 GCAGATAGAGGGTTGTATTATTGG 59 141503928 141503948 CTGCATCATCTAATACGAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srp72 ENSRNOG00000002100 ENSRNOT00000002862 1 1 2 80 14 33550968 33553183 TTTCAGAAGATTCAGACGGG 58 33550907 33550927 GCATGATGTAAGCCATTTGAC 58 NA Rattus norvegicus 81 RGD1559951 ENSRNOG00000003227 ENSRNOT00000004303 1 1 1 63 X 11748872 11749492 TGCTTGGACTTCAGTTCCA 59 11748827 11748845 CGTTGATCCCAAGATTCCA 58 NA DesignNoJunction Rattus norvegicus 81 Adcy4 ENSRNOG00000020401 ENSRNOT00000027719,ENSRNOT00000067536 1 2 2 80 15 34457520 34457774 TCATCAGCATCCCATACTCC 59 34457459 34457477 GTTCGAAGCTCATGTGCAG 60 NA Rattus norvegicus 81 Mocs3 ENSRNOG00000025067 ENSRNOT00000039403 1 1 1 60 3 164987499 164987517 GCCTCAAGTAGAGGTGGAC 60 164987541 164987559 CAGACTCAAAGGGATGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361642 ENSRNOG00000029978 ENSRNOT00000050333 1 1 1 60 1 168831018 168831036 GGTTTGGCTTTCACATCCC 59 168831058 168831078 ACAAGTAGGTAAAGGTTGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clcnka ENSRNOG00000052368 ENSRNOT00000089184 3 1 1 80 5 159939035 159939053 CTGTGGTTGGAATGGTGTC 59 159937828 159938993 CAGCATCCAGAACTTCATGAC 59 NA Rattus norvegicus 81 Thnsl1 ENSRNOG00000033076 ENSRNOT00000045984 2 1 1 80 17 88099325 88099917 CCGACTTACTTGGCTAAAGC 59 88099959 88099978 GGTGACATCTGGTAAAGCTC 58 NA InUTR Rattus norvegicus 81 RGD1561212 ENSRNOG00000024283 ENSRNOT00000043949 2 1 1 82 5 120877525 120878422 AAGAGTTGTCCAGATGCCT 59 120877461 120877482 GTGTTTCAAGTCTGACATTGAG 58 NA Rattus norvegicus 81 Olr454 ENSRNOG00000056255 ENSRNOT00000090772 1 1 1 60 3 73115162 73115182 CAGTCTGCTAGGGAATATCAC 58 73115203 73115222 TGTATGGAGTCGGGAATCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apc2 ENSRNOG00000033791 ENSRNOT00000049146,ENSRNOT00000086061 3 2 2 81 7 12269769 12270473 GTACAGGAGACACTCCTGTC 59 12269707 12269725 TCCTCGTCAAATGACAGCT 59 NA Rattus norvegicus 81 LOC100125367 ENSRNOG00000005558 ENSRNOT00000007341 3 1 1 112 13 111891039 111891502 AACGCATGGGATCTTTCTC 58 111891577 111891596 GGTGTTGACATGAGATCTGG 58 NA InUTR Rattus norvegicus 81 RT1-DOa ENSRNOG00000026762 ENSRNOT00000091485,ENSRNOT00000088132 1 2 2 60 20 3891248 3891268 CTAGTAAAGCCCAACTGTACG 59 3891289 3891308 CACTAGGAGGAATCAGAACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Man2a2 ENSRNOG00000012055 ENSRNOT00000016281,ENSRNOT00000078982 2 2 2 80 1 142162683 142162701 TACCTAATGCTGGACCGAG 59 142161672 142162640 CACAGAAATTTGGCTCCTGG 60 NA Rattus norvegicus 81 LOC100910597 ENSRNOG00000050668 ENSRNOT00000074466 2 1 1 60 1 169637378 169637396 GCTGAGAAATGGCTTAGGT 58 169637419 169637438 ACAATAATTCCTCTGGGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcg2 ENSRNOG00000007041 ENSRNOT00000088983,ENSRNOT00000009546 2 2 2 80 4 88862989 88864463 AGATTCCAAGGTTGGAACTC 58 88864506 88864524 ATGAGCTCCATTCCTATGC 57 NA Rattus norvegicus 81 Rpl37-ps1 ENSRNOG00000048958 ENSRNOT00000043523 2 1 1 60 17 87020247 87020266 TAAGAGGCGAAACACTACCG 60 87020286 87020307 TCTTCGGTAGACGATCTTTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmc4 ENSRNOG00000059741 ENSRNOT00000085010,ENSRNOT00000080466 1 2 2 80 1 64126172 64126192 TGATGTATACAGTAGCCCTGG 59 64126230 64126356 TTTGTACTTCCGTCTCTATCTGG 60 NA Rattus norvegicus 81 AABR07017745.1 ENSRNOG00000048707 ENSRNOT00000071740 3 1 1 75 15 30570510 30570529 TTACTCCTAGGCCTTCACCT 60 30570705 30570723 GACTTCGTTTCACCTGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Olr853 ENSRNOG00000018357 ENSRNOT00000024722 1 1 1 60 5 69784846 69784865 GACTTTCCCAGTATCCAGAG 57 69784887 69784906 AAGTACATGATGAGGCAGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909776 ENSRNOG00000026594 ENSRNOT00000036793 1 1 1 60 5 126087287 126092302 CTACAGGCCTCCTAAGGAG 58 126087245 126087263 CAGTGGACAGTACATGGTC 58 NA DesignNoJunction Rattus norvegicus 81 Olr468 ENSRNOG00000056132 ENSRNOT00000085420 1 1 1 60 3 73302741 73302761 ACCCATGTACTTCTTCCTCAG 59 73302781 73302801 AACATTGGTGGCATAACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nfatc3 ENSRNOG00000054264 ENSRNOT00000087491,ENSRNOT00000089783 2 2 2 80 19 38062180 38077422 ATCCTGTTGTGAAGCTCCT 59 38077463 38077484 AATATCTATCATCGGCTGTTCC 58 NA Rattus norvegicus 81 Gemin7l1 ENSRNOG00000034168 ENSRNOT00000040934 1 1 1 60 4 78954727 78954745 GAAGGTGTACACGTGACTG 58 78954685 78954705 CGTAGAAGTTAGCTACATCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aven ENSRNOG00000006419 ENSRNOT00000065752 1 1 1 89 3 104113881 104113899 AGTGAGTCACTGGTTCGAG 59 104113952 104115685 TAAAGGAACTGCGGTCTGG 60 NA Rattus norvegicus 81 Gatsl2 ENSRNOG00000001484 ENSRNOT00000002033 2 1 1 80 12 25602982 25603816 TGTTCTACTCCAATGGAGTG 57 25602921 25602941 TGAGTGAGAAAGAGAAGAAGC 58 NA Rattus norvegicus 81 Hspa14 ENSRNOG00000015212 ENSRNOT00000020854 3 1 1 80 17 78751061 78753397 TGACATTAACAAGGTTGTGCTG 60 78753434 78753456 GCTGGGAAGAGATCTTTAATCAG 59 NA Rattus norvegicus 81 Ppp3ca ENSRNOG00000009882 ENSRNOT00000047975 3 1 1 81 2 242181015 242184114 CTGATGAAGCCATCAAAGGA 58 242184157 242184176 TCGTTAATTCGGTCTAAGCC 58 NA Rattus norvegicus 81 Vom1r73 ENSRNOG00000052492 ENSRNOT00000078886 3 1 1 60 4 87758736 87758756 TTTCTTGTAGGAGTCATGCTG 58 87758774 87758796 GATGTCTGCACAAGATAATCACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trmt112 ENSRNOG00000021132 ENSRNOT00000028695 3 1 1 89 1 222168212 222168336 GCGGACACCTTAAACTTGG 59 222168389 222168407 CACATGGTGCATCTTCCTC 59 NA Rattus norvegicus 81 Swi5 ENSRNOG00000022860 ENSRNOT00000030558 3 1 1 83 3 11309711 11310948 TAATAGCCGAGGGCTATCG 59 11309646 11309664 GCGACACATCCTTGATGTC 59 NA Rattus norvegicus 81 Cryba1 ENSRNOG00000008700 ENSRNOT00000011608 1 1 1 80 10 65166731 65167232 ATACAGTGTGGAGCTTGGG 59 65167276 65167294 TCCGTGATGGTCACATTCC 60 NA Rattus norvegicus 81 Tmem241 ENSRNOG00000023412 ENSRNOT00000029274 2 1 1 81 18 3527497 3527515 TGAAGTTCTCACCTGTGGG 59 3510281 3521516 GAGGAAGAGGGCACTACAG 59 NA Rattus norvegicus 81 Sox12 ENSRNOG00000007514 ENSRNOT00000009852 2 1 1 67 3 147865180 147865198 CACAACGCTGAGATCTCCA 60 147865131 147865149 GGAATCTTCTCCGAGTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r31 ENSRNOG00000031562 ENSRNOT00000047147,ENSRNOT00000090708 2 2 2 81 1 74994096 74998985 TGAAACAACTGTGGTACTTTGG 59 74999023 74999045 GTAGCTGAGGATTCTGTTATTGG 59 NA Rattus norvegicus 81 Awat1 ENSRNOG00000026231 ENSRNOT00000076053 3 1 1 102 X 70409810 70410447 CCATTACAATCCTGAAGACTAAGG 59 70410508 70410526 CAGAAGTTGCAGAAGGCAC 60 NA Rattus norvegicus 81 Hrasls5 ENSRNOG00000023528 ENSRNOT00000032123 2 1 1 92 1 222907821 222908315 AACCTACAAATGACTCAGCGA 60 222908369 222908387 TTCGGGCCTGTTCTAATCC 60 NA Rattus norvegicus 81 Galnt14 ENSRNOG00000007951 ENSRNOT00000010613 1 1 1 80 6 24803322 24813058 GTCAAAGAGGATTACACAAGGG 59 24803263 24803285 GGCAGACTCAATATAGTTGAAGG 59 NA Rattus norvegicus 81 Olr845 ENSRNOG00000059811 ENSRNOT00000085133 2 1 1 60 5 69478059 69478079 CACACCCATGTACTTCTTCCT 60 69478019 69478040 AGATGTTGTGTAGCAGATATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vcl ENSRNOG00000010765 ENSRNOT00000015179,ENSRNOT00000085126 1 2 2 80 15 3477688 3477707 CTACAACTCCCATCAAGCTG 58 3473842 3477647 TCTCGTCAAATACCTCTTCCC 59 NA Rattus norvegicus 81 Hist1h1t ENSRNOG00000061863 ENSRNOT00000081345 1 1 1 60 17 43675627 43675645 ACGTGGAGAAGAACAACAG 58 43675585 43675605 ACTCCCTTATTCACAAGTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppip5k2 ENSRNOG00000011613 ENSRNOT00000072791 2 1 3 85 9 111279611 111280814 TGAAATGTCATCTGTGGCCT 60 111280861 111280880 GGAGGATCTTCGTAGGTGTG 60 NA Rattus norvegicus 81 Grxcr1 ENSRNOG00000038891 ENSRNOT00000059439 2 1 1 87 14 41722348 41785644 GTGTTACAGCAACCATCAGC 60 41722280 41722298 TCTCAAAGGTCGTCCTCAC 59 NA Rattus norvegicus 81 Olr6 ENSRNOG00000045783 ENSRNOT00000072404 3 1 1 60 1 70481160 70481180 GAGATGTGCTATGTGTCTGTC 59 70481201 70481220 AGAGTCCATTCCATAGTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Maoa ENSRNOG00000002848 ENSRNOT00000066674 3 1 1 80 X 6571247 6571265 TTCCTGTGGTATGTGAGGC 59 6569019 6571204 TACAAATTTCCGTTCCTGGC 59 NA Rattus norvegicus 81 Casc4 ENSRNOG00000016357 ENSRNOT00000044158 2 1 1 81 3 113855400 113860610 TCCTGCTGCTTTAAAGAAGC 59 113860652 113860672 CTGTCCAGTTAGAAGATGGGA 59 NA Rattus norvegicus 81 RGD1564937 ENSRNOG00000030962 ENSRNOT00000068366 2 1 1 80 8 55193515 55193534 TGATAGGCAACTGGAACCAG 60 55192353 55193472 AGTGTCCAAACTGGGAAGG 60 NA Rattus norvegicus 81 Mab21l2 ENSRNOG00000031398 ENSRNOT00000049461 3 1 1 60 2 185851665 185851683 AAGGGCTGGAAGTCATCTC 59 185851623 185851642 CCCATTTGGTTGAGGTAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 M1ap ENSRNOG00000007288 ENSRNOT00000009701 2 1 1 80 4 113811900 113835423 CAATGATGAGAGTTCCATCCTG 59 113835463 113835482 AAGAAGACCTCCATGCTGAC 60 NA Rattus norvegicus 81 AABR07027451.1 ENSRNOG00000046284 ENSRNOT00000074147 1 1 1 60 17 31813688 31813708 GATGACACAAACTCCAGTCTC 59 31813648 31813667 GCAAGAGATAGAGGCTTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563680 ENSRNOG00000004571 ENSRNOT00000006177 1 1 1 80 3 107229497 107229520 GTTATAAACAGTATGCTACGGGAC 60 107229557 107229927 GTTCACGATGCACTGATAGAC 59 NA Rattus norvegicus 81 Slc45a3 ENSRNOG00000007591 ENSRNOT00000010242 1 1 1 80 13 48761700 48762241 GACACTATGATGAAGGCATTCG 60 48762282 48762300 TGACCAGGGAGAAGAACAG 59 NA Rattus norvegicus 81 Ncapd2 ENSRNOG00000055300 ENSRNOT00000083016 3 1 1 80 4 157700507 157700999 TCCTGATGAAAGTGGTATCCT 58 157700447 157700468 TTCTATCTGATCCACTCAAAGC 58 NA Rattus norvegicus 81 AABR07020999.1 ENSRNOG00000026400 ENSRNOT00000035157 3 1 1 60 13 52413299 52413317 AATTTGCCCAAACCCTTGG 59 52413340 52413359 AACTGTATGAGCCTGAGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sgcb ENSRNOG00000002135 ENSRNOT00000089094,ENSRNOT00000002921 3 2 2 80 14 37121551 37121571 GAGACTCATGAGTTTCACCTG 59 37121612 37121907 GTTGCTGGTGATCCTTTCAG 59 NA Rattus norvegicus 81 Klf15 ENSRNOG00000017808 ENSRNOT00000024011 2 1 1 117 4 122369902 122369920 GATGTACACCAAGAGCAGC 59 122376595 122376613 TGACAACTCATCTGAGCGT 59 NA DesignNoJunction Rattus norvegicus 81 RGD1560017 ENSRNOG00000029262 ENSRNOT00000049695 1 1 1 60 3 94833090 94833111 AGAGTAATGCTGAACTTAAGGG 58 94833051 94833070 ACCTGGATGTGTTCAATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psmc4 ENSRNOG00000018994 ENSRNOT00000025819 1 1 1 80 1 84985336 84985354 CATTCCGTTGGTCATTGGT 59 84983852 84985294 TAGTTAGAGCCTGTGGTAGAG 58 NA Rattus norvegicus 81 Ctxn3 ENSRNOG00000022957 ENSRNOT00000037529 1 1 1 60 18 52550988 52551006 CTAGACCCATATCGGAGCA 58 52551030 52551048 TCTCTAGACCTTCAAGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dag1 ENSRNOG00000019400 ENSRNOT00000026327 1 1 1 96 8 116985260 116992792 TTATCAAGGTGTCTGCAGCA 60 116985183 116985201 TCAGTGTCAAGAGGAAGGC 59 NA Rattus norvegicus 81 Gtf2i ENSRNOG00000001479 ENSRNOT00000077189,ENSRNOT00000040356,ENSRNOT00000002020 1 3 3 80 12 25430554 25431721 GAGTCCATGTGTAAAGAGCTG 59 25431761 25431781 AACGACAAACACATCTGTCTC 59 NA Rattus norvegicus 81 Eaf1 ENSRNOG00000019559 ENSRNOT00000026525 2 1 1 80 16 7589207 7591329 CCATTCGCTATGACTTTAAGCC 60 7591369 7591388 TGACTTCATCTCCTTTGCCA 59 NA Rattus norvegicus 81 Fam173b ENSRNOG00000022347 ENSRNOT00000046325 1 1 1 80 2 84679160 84682244 GAAAGAGGAGAAACGCCTG 59 84682285 84682306 TGTCTTCAAACTGTCAGATTCC 59 NA Rattus norvegicus 81 Fam173b ENSRNOG00000022347 ENSRNOT00000046325 3 1 1 80 2 84684612 84685945 TATGGAAGGTCACCTTTGCA 59 84693303 84693321 GTTTCTTCTCCAGCTGTGG 59 NA Rattus norvegicus 81 Def8 ENSRNOG00000000264 ENSRNOT00000000281 3 1 1 81 19 56244149 56244167 TTCAACAAGCACCTTGGAC 59 56244211 56245604 GCAGAGTGTCTTCAGAAGTG 59 NA Rattus norvegicus 81 Atp13a5 ENSRNOG00000024127 ENSRNOT00000035049 3 1 1 80 11 75025359 75030612 ATGACTTGAGACAGCAATCAG 59 75030652 75030672 CTCTTACTGTGATTGTGACCT 58 NA Rattus norvegicus 81 Fam89a ENSRNOG00000019022 ENSRNOT00000025705 2 1 1 80 19 57503352 57514613 AAGGAGATGGTTGGTCTCC 59 57503290 57503309 GTACTCCTGAATGGACTCGT 59 NA Rattus norvegicus 81 Foxe1 ENSRNOG00000023497 ENSRNOT00000012637 3 1 1 60 5 61955426 61955444 CAAGAAGTGGCAGAACAGC 60 61955467 61955486 GATCTTGAGGAAGCAGTCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdsub1 ENSRNOG00000005990 ENSRNOT00000008168 2 1 1 80 3 45935478 45935576 ACTCAGCATACCAGGTACG 59 45935416 45935434 TGTCTTGTCCATCGAACCA 59 NA Rattus norvegicus 81 LOC100909688 ENSRNOG00000049662 ENSRNOT00000075247,ENSRNOT00000075062 1 2 2 60 2 86474439 86475031 AGGACCTTCTGTCATTTACAG 58 86474399 86474418 AGACATTCACACTCCTCTGG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100911163 ENSRNOG00000030018 ENSRNOT00000028058 3 1 1 80 15 35393597 35394076 CAGAGGAAGATCAATGACAGTC 59 35393538 35393556 GCCACAGGGATAATCTGCT 60 NA Rattus norvegicus 81 LOC686209 ENSRNOG00000047452 ENSRNOT00000074907 2 1 1 60 5 137776186 137776207 TCGCTATATGTTATCCACTCCA 59 137776225 137776246 AGGGCTATGCATAAAGTTTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ercc6l2 ENSRNOG00000019175 ENSRNOT00000025965 2 1 1 80 17 1388887 1389882 AACTAGAAACACCTAGAGACCC 59 1389921 1389941 ACTCCTCATCACTCATGTCAC 60 NA Rattus norvegicus 81 Cebpd ENSRNOG00000050869 ENSRNOT00000074586 1 1 1 70 11 89008726 89008744 GAACGAGAAGCTGCATCAG 59 89008778 89008796 CTTTGAAGAACTGCCGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ntsr2 ENSRNOG00000049054 ENSRNOT00000071387 2 1 1 80 6 41921864 41923285 GATGATGGATGGACTAATGAGC 59 41923325 41923344 TGAGCTGACATAGAAGAGCG 60 NA Rattus norvegicus 81 Cdh5 ENSRNOG00000013324 ENSRNOT00000086995,ENSRNOT00000017983 2 2 2 80 19 1040079 1051241 CACTATGTGGGAAAGATCAAGTC 59 1040021 1040040 GATCTTGCCAGCTTGTTCTC 59 NA Rattus norvegicus 81 Zfat ENSRNOG00000025140 ENSRNOT00000068291 3 1 1 80 7 109121957 109123242 GACTAATCATCCAGAGGTCTCC 60 109121898 109121918 TTTCCAATTAGCCCTTTGAGC 59 NA Rattus norvegicus 81 Pramef8 ENSRNOG00000027278 ENSRNOT00000037875 1 1 1 84 5 162195614 162196451 TTGTTCAGGTACCTGAAGAC 57 162196498 162196516 GGGACAAGGAACTCAAGTC 58 NA Rattus norvegicus 81 Odf4 ENSRNOG00000004225 ENSRNOT00000005667 1 1 1 80 10 55515655 55515779 GACGATAAAGACCAGGAGCA 60 55515594 55515614 TGTGCCAATTTCCATTGAAGG 60 NA Rattus norvegicus 81 Ydjc ENSRNOG00000001861 ENSRNOT00000002542,ENSRNOT00000078394 2 2 2 68 11 88092356 88092374 GATTTCGAGAGGCCTTAGC 58 88092101 88092119 GTTGAGCTTCTAGCTCCTC 57 NA DesignNoJunction Rattus norvegicus 81 Podxl2 ENSRNOG00000016255 ENSRNOT00000021826 2 1 1 80 4 120792504 120792922 GGACTCTACTCAGGTGATCTG 59 120792444 120792465 ATGTTCTCTGTCATGTTCAGGA 60 NA Rattus norvegicus 81 Rps4y2 ENSRNOG00000031041 ENSRNOT00000043543 1 1 1 60 4 182746123 182746141 GTCCATGTGAAAGATGCCA 58 182746164 182746183 TCACGAAGATGTTGGAGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr323 ENSRNOG00000021069 ENSRNOT00000028601 3 1 1 60 1 228524348 228524368 GCTGTTTCTCTTCCTTCTCCT 60 228524308 228524326 CATGATGAGCAGGTTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncdn ENSRNOG00000011751 ENSRNOT00000016230 3 1 1 86 5 144772317 144772335 AAGACTGCTTCTAGCTGCC 60 144770960 144772267 GGAGTTCCTTGGAGAGCTG 60 NA Rattus norvegicus 81 LOC606294 ENSRNOG00000000395 ENSRNOT00000000444 3 1 1 80 20 32199268 32199286 AAGCCAGACATTGTCTGTC 58 32196941 32199225 CTTCAGGAGTGTCTTCTGTG 58 NA Rattus norvegicus 81 Gbas ENSRNOG00000023919 ENSRNOT00000035621 2 1 1 82 12 30546863 30546881 CTCTGGAGGTATGAGGGAG 58 30545531 30546819 CGGAAACTTACAAATTCCTGG 58 NA Rattus norvegicus 81 LOC100911064 ENSRNOG00000060632 ENSRNOT00000078704 3 1 1 60 15 36213379 36213400 GACAGAGAAGAACATCATCTCC 58 36213340 36213362 AGTGATGAAGAAGTAGAGCTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptch1 ENSRNOG00000019354 ENSRNOT00000086130,ENSRNOT00000026287 1 2 2 80 17 1067901 1067920 CCCTACTACAACACCTGGAC 60 1065577 1067859 GTTCCAACTTCCATTGCCTG 60 NA Rattus norvegicus 81 St6galnac4 ENSRNOG00000048870 ENSRNOT00000072685 3 1 1 80 3 11616298 11617601 TAGCTACTGCAGTGAGAAGAG 59 11617641 11617661 TACATCTGACACTCATCCAGC 60 NA Rattus norvegicus 81 D2hgdh ENSRNOG00000019012 ENSRNOT00000078222,ENSRNOT00000025711 3 2 2 80 9 100970150 100971213 CAGAGGAAAGTCCAGATGC 58 100971257 100971275 ATACTTGAACACGTAGCCG 58 NA Rattus norvegicus 81 Gpx1 ENSRNOG00000048812 ENSRNOT00000073247 1 1 1 85 8 117117667 117117685 AATGATCTGCAGAAGCGTC 58 117117734 117117969 TTGCCATTCTCCTGATGTC 58 NA Rattus norvegicus 81 Dhcr7 ENSRNOG00000020776 ENSRNOT00000028195,ENSRNOT00000078979 2 2 2 80 1 217027263 217027283 GACTTCTGCCACAGATTTCTG 59 217027321 217027951 CTTATTTACAATCCCTGCTGGAG 59 NA Rattus norvegicus 81 RGD1566226 ENSRNOG00000026061 ENSRNOT00000089660,ENSRNOT00000038748 2 2 2 80 3 121980958 121983657 GACCAGTATCTTTATGTTCCTCC 59 121980900 121980918 ATGGCAAGTAACAGTCACC 58 NA Rattus norvegicus 81 Cela1 ENSRNOG00000004725 ENSRNOT00000006351 2 1 1 80 7 142306285 142306303 GGGCTGTAATGTCTCCAGG 60 142305628 142306244 TAGGCAATGACATTGTTCATCC 59 NA Rattus norvegicus 81 Arhgap19 ENSRNOG00000048166 ENSRNOT00000071417 1 1 1 80 1 261028859 261030153 TCAGAAACTCTTTAAGGCCC 58 261028798 261028818 TTTGACACTTGAGTTCTGGAG 58 NA Rattus norvegicus 81 Klri1 ENSRNOG00000052803 ENSRNOT00000090813 3 1 1 81 4 163515728 163524519 AAGACAAGGACCCAAATCAG 58 163515666 163515685 CATGGTTATCATCAGCACCA 58 NA Rattus norvegicus 81 Dennd3 ENSRNOG00000010794 ENSRNOT00000014541 3 1 1 80 7 114798104 114802475 ACAAGATGAAGAATGAACTGCC 59 114802513 114802534 CAGCTGAAGGGTTAATCTTGTG 60 NA Rattus norvegicus 81 RGD1560028 ENSRNOG00000006782 ENSRNOT00000008947 2 1 1 94 4 96312638 96312657 TCAAAGGGCTTTCACAATGC 60 96320739 96326650 CATACTTAATCTCAAGTCTCTGCAC 60 NA Rattus norvegicus 81 AABR07053707.1 ENSRNOG00000017740 ENSRNOT00000023913 2 1 1 94 3 121492816 121492834 ACAGAAGCAGGATTCGGAG 60 121492892 121493033 ACAAGAACCACCAGGTGAG 60 NA Rattus norvegicus 81 Gje1 ENSRNOG00000012092 ENSRNOT00000016102 2 1 1 80 1 8885230 8885939 ATGAAGGATGTGTTAAACCTCC 59 8885171 8885189 CAAGGAAGAACATCCGCAC 59 NA Rattus norvegicus 81 Znrf1 ENSRNOG00000019028 ENSRNOT00000025716 2 1 1 134 19 43750729 43750747 ATGGTTACCAAGAGACCGG 59 43750845 43821781 GGCACTTGAAACCACTGTG 60 NA Rattus norvegicus 81 Prkag3 ENSRNOG00000017248 ENSRNOT00000023365 1 1 1 80 9 82001796 82004109 CAATGAATCTGGTCAAGTCGT 59 82001598 82001619 AGGTGGTTGTAAGTTTGTTGTG 60 NA Rattus norvegicus 81 Gsc ENSRNOG00000010605 ENSRNOT00000014204 3 1 1 84 6 128148027 128148045 GACAAAGTACCCAGACGTG 58 128147600 128147979 CTTAAACCAGACCTCCACC 58 NA Rattus norvegicus 81 Ptrh1 ENSRNOG00000049034 ENSRNOT00000060258 3 1 2 115 3 11825506 11825524 TCACCTATTGCAGCCTGAG 60 11825602 11825637 TAAATACCTGGGTCCCAAGG 59 NA Rattus norvegicus 81 Shisa4 ENSRNOG00000007369 ENSRNOT00000009712 1 1 1 88 13 52194317 52194335 ATGTACCCACCTAGTGGTC 58 52194020 52194265 ATATAGGGTGGAGGAGCTG 58 NA Rattus norvegicus 81 Oxgr1 ENSRNOG00000037884 ENSRNOT00000057564 3 1 1 60 15 105401825 105401843 CATTAGCTGCCCTCAACAC 59 105401783 105401801 AAGTTATTGCTGACGACGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wnt11 ENSRNOG00000015982 ENSRNOT00000021674 1 1 1 60 1 163797995 163805185 CTGGCATTGTCCAAGACTC 59 163805209 163805227 GCTGTTTACAGTGTTGCGT 59 NA DesignNoJunction Rattus norvegicus 81 AABR07015057.1 ENSRNOG00000060518 ENSRNOT00000077306 1 1 1 81 14 46529354 46529372 GATCCCTACAACTCGGTGG 60 46525538 46529309 GATTGTTCACCCACACCAC 59 NA Rattus norvegicus 81 AABR07015057.1 ENSRNOG00000060518 ENSRNOT00000077306 2 1 1 82 14 46529355 46529373 GGATCCCTACAACTCGGTG 60 46525538 46529309 GATTGTTCACCCACACCAC 59 NA Rattus norvegicus 81 Erbb4 ENSRNOG00000014248 ENSRNOT00000019283 3 1 1 80 9 75060689 75060707 ATCACAGACTTTGGACTGG 57 75058585 75060646 TTTAATTGGCATCTTGCCAC 57 NA Rattus norvegicus 81 LOC100361492 ENSRNOG00000001466 ENSRNOT00000001990 2 1 1 80 1 258246886 258246905 GGATCAGAAACCACAAGCAC 60 258246947 258247896 CTGGACTTTAGCTGTGACCT 60 NA Rattus norvegicus 81 Tmem59 ENSRNOG00000009778 ENSRNOT00000013224 3 1 1 80 5 126794375 126794394 GCACAGAGCTTCATAACCTC 59 126794435 126796189 CGGCTTAGACTGGAATATGAC 58 NA Rattus norvegicus 81 Arcn1 ENSRNOG00000061108 ENSRNOT00000082687 3 1 1 80 8 49053144 49055260 TACTGCAACATACAGGTTACC 58 49053084 49053104 TAAGAAAGTGGTCTCTGTGGA 59 NA Rattus norvegicus 81 AABR07061068.1 ENSRNOG00000057187 ENSRNOT00000072325 3 1 1 60 4 103496039 103496058 GAGAGTCAGCTTCCATCTCC 60 103496077 103496099 GTGATGCCATTACTATGTAGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019399.1 ENSRNOG00000010144 ENSRNOT00000013475 1 1 1 149 15 104191363 104191384 ATACTTGACAAAGGAGGACC 57 104191233 104191251 GATGGAAAGCTCTGGAAGC 59 NA DesignNoJunction Rattus norvegicus 81 Slc39a7 ENSRNOG00000000465 ENSRNOT00000083873 2 1 2 74 20 3821638 3821783 CTTGGAACCTCATTCGCAC 59 3821582 3821601 CCTAACTCTTTCTCACCGCT 60 NA DesignNoJunction Rattus norvegicus 81 Dpy19l3 ENSRNOG00000021573 ENSRNOT00000039115 3 1 1 80 1 92011779 92019489 TGGATTAACTCCAATACACCGA 59 92011720 92011739 TCCTGTACACAGCTTGACTC 60 NA Rattus norvegicus 81 Herc6 ENSRNOG00000023969 ENSRNOT00000058626 1 1 1 80 4 88627381 88628137 GGATTTCCTCCTTGATAACCA 58 88627321 88627340 GAGCTTCTTGATGTGGAGAG 58 NA Rattus norvegicus 81 Cetn1 ENSRNOG00000016409 ENSRNOT00000021955 3 1 1 60 18 786342 786361 CTTCTTGGCTGTGATGACTC 59 786301 786321 CTTCAGGATTTCCTCTTTGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Urb2 ENSRNOG00000026853 ENSRNOT00000036042 3 1 1 80 19 56811024 56813795 TCTTACAGGTCCATGCATACC 60 56813835 56813855 TTAAACATTTGGGTGAGCAGG 59 NA Rattus norvegicus 81 RGD1310257 ENSRNOG00000014186 ENSRNOT00000018989 1 1 1 62 1 75354550 75354568 ATGTCCAACAAGTCCACAG 58 75347355 75347373 CTTGACAGTGATGAAGGCC 59 NA DesignNoJunction Rattus norvegicus 81 Fam161b ENSRNOG00000011112 ENSRNOT00000014814 1 1 1 80 6 108069832 108070601 ACAAACTCCAGGAATCAGAG 57 108069771 108069790 GAGAGGAAGACATCTGTAGC 57 NA Rattus norvegicus 81 Fam161b ENSRNOG00000011112 ENSRNOT00000014814 3 1 1 80 6 108069832 108070602 GACAAACTCCAGGAATCAGAG 59 108069772 108069791 AGAGGAAGACATCTGTAGCA 58 NA Rattus norvegicus 81 Rem2 ENSRNOG00000011646 ENSRNOT00000016020 2 1 1 102 15 33123171 33124246 CATCTGGGAACAGGGAGAC 60 33124312 33124330 GAAGCTTCGTCGATCTGTG 59 NA Rattus norvegicus 81 AABR07068455.1 ENSRNOG00000046623 ENSRNOT00000075578 2 1 2 121 9 105944864 105946151 TCTCGCTATCTGCATCAGG 59 105946236 105946254 ATGCTGGGAGTTCAGTCTG 59 NA Rattus norvegicus 81 Themis2 ENSRNOG00000012965 ENSRNOT00000017340 3 1 1 80 5 150972588 150972943 AAGCACAGAATTCAGTGCTG 59 150972527 150972545 GGAGATGTGACTCAGTGGT 59 NA Rattus norvegicus 81 Abhd14a ENSRNOG00000011936 ENSRNOT00000077514,ENSRNOT00000016056 2 2 3 90 8 115146162 115147177 AAGAGTTCCACAGAGGCTG 59 115146090 115146109 AGTAGGAACATGAGGAGCAG 59 NA InUTR Rattus norvegicus 81 Mir3571 ENSRNOG00000035523 ENSRNOT00000053646 1 1 1 60 18 2054964 2054988 CCATAGCATTCTATGTTCATATGGG 60 2055005 2055024 AATAGTGCCTACTCAGAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asb5 ENSRNOG00000042630 ENSRNOT00000066639,ENSRNOT00000089665 2 2 2 80 16 39985831 39987115 AACATGAAGCTACTCCAAGC 58 39985770 39985789 GATGCAACCTTTGTCTTCCT 59 NA Rattus norvegicus 81 Fam222b ENSRNOG00000029570 ENSRNOT00000045107 2 1 1 80 10 65402022 65413041 TTCAGAAATGGGACACTACAC 58 65413083 65413101 CCTTCTTAGCATACGCGTC 59 NA Rattus norvegicus 81 Fam181a ENSRNOG00000048412 ENSRNOT00000075399 1 1 1 60 6 128975583 128975602 CGTAGTTCTGAAGCCTATCC 58 128975624 128975643 AAAGACGTTGAAGATGGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbm20 ENSRNOG00000014705 ENSRNOT00000054685 3 1 1 80 1 274575176 274580814 AGCATTCCTCTAGGAGTGG 58 274580858 274580876 CTCGCTTGTGTAGAACAGG 58 NA Rattus norvegicus 81 Rn60_X_0744.1 ENSRNOG00000048213 ENSRNOT00000076109 1 1 1 60 X 73581734 73581752 CCTGCTGAACGATTACACC 59 73581776 73581794 CTCCTCCCACCCAAATACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr84 ENSRNOG00000036834 ENSRNOT00000055279 2 1 1 81 7 144935990 144936709 AACCTCAGGTGAGTCTCCA 60 144935927 144935948 ATCGATAGCCCAATACAGACTC 60 NA InUTR Rattus norvegicus 81 Bhlhe23 ENSRNOG00000010312 ENSRNOT00000013690 3 1 1 63 3 176281596 176281616 AGAACTACATCCTCATGCAGG 60 176281553 176281571 TTGAGATAGGCCACCAAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyth4 ENSRNOG00000007679 ENSRNOT00000077256,ENSRNOT00000056221 2 2 2 81 7 119841361 119841379 GTGAAGACATGGAAGCGAC 59 119841424 119842214 GAGGCTCTTTGTCAGTGGT 60 NA Rattus norvegicus 81 Mum1 ENSRNOG00000024549 ENSRNOT00000060708 3 1 1 85 7 12344747 12344765 TCCAGGTTAAGAGCTCAGC 59 12342975 12344699 GACTTCATTCTGAGAGGCCA 60 NA Rattus norvegicus 81 RGD1560987 ENSRNOG00000022882 ENSRNOT00000032787 2 1 1 81 14 51439166 51439185 CTTAGGTGGCAACCTTGAC 59 51439225 51439248 CTTCAGGTTGATGATGTAGATACC 59 NA Rattus norvegicus 81 Olr463 ENSRNOG00000060217 ENSRNOT00000082357 3 1 1 60 3 73235691 73235711 TCCTCTTTGCATTGTTTCTGG 59 73235732 73235751 ATCATGCCCAAATTACCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clec4b2 ENSRNOG00000027655 ENSRNOT00000038297 1 1 1 80 4 156113338 156127165 ATGGTTTCAGGTAAAGTCTGG 58 156127204 156127225 GAAGTCAGTTGTAAAGTAGCAG 57 NA Rattus norvegicus 81 Ltb4r ENSRNOG00000020399 ENSRNOT00000027647 1 1 1 60 15 34452395 34452414 CTGTGTCACTATGTCTGTGG 58 34452434 34452455 TCATGATAGTGATAAGCAGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033582.1 ENSRNOG00000050693 ENSRNOT00000073385 1 1 1 60 11 29087802 29087820 TATGGCTGTGGCTATGGTG 60 29087844 29087862 ACCTTCTACAGCACAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klf13 ENSRNOG00000015822 ENSRNOT00000066380 2 1 1 96 1 124803196 124803214 CTCTGTCTCACTGTCGGTC 60 124772952 124772970 ACTTCTTGTTGCACTCCTG 58 NA DesignNoJunction Rattus norvegicus 81 Cct8l1 ENSRNOG00000050369 ENSRNOT00000073925 2 1 1 60 4 6045400 6045418 TGCCACAAGGTTTACAGGA 59 6045358 6045379 GTTCCCACTCAAACATTATCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000007866 2 1 5 80 8 6152391 6152411 GCTACAGATGGAGAAGGAGAG 60 6140379 6152352 CCATTTAACACTTCCTGTGGTC 60 NA Rattus norvegicus 81 Olfm1 ENSRNOG00000009862 ENSRNOT00000065953 2 1 2 85 3 6780896 6780914 AGATGAAAGGCCTGGAGTC 59 6780960 6782364 TTTAAGTTAGCCCTTGAACTGC 59 NA InUTR Rattus norvegicus 81 Krtap14l ENSRNOG00000042680 ENSRNOT00000064058 3 1 1 60 11 28735601 28735620 CAGATCCCTGAATTGTGGAG 58 28735560 28735581 GTAGGTTCTAGACCCATAACCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tuba8 ENSRNOG00000048169 ENSRNOT00000074096 2 1 1 81 4 153784937 153785584 GAGCCTACAGTAGTAGACGAG 59 153785627 153785645 CCTCCTTCCCTGTGATCAG 59 NA Rattus norvegicus 81 Zfp688 ENSRNOG00000018379 ENSRNOT00000024858 1 1 1 81 1 198866644 198868415 CTCCGAGAGGAGATACTCCA 60 198866582 198866600 AGCTGAGCAGGAATGTCTG 60 NA Rattus norvegicus 81 Cts8l1 ENSRNOG00000048693 ENSRNOT00000073585 2 1 1 80 17 4063826 4063846 ATAACAGGGAGAATTCCTTGG 58 4063885 4064000 TGAATTCTTCATCAGTCAGGTC 58 NA Rattus norvegicus 81 Olr1522 ENSRNOG00000030148 ENSRNOT00000050349 2 1 1 69 10 75190726 75190744 CTCAGGAACCAGGAGATGC 60 75190658 75190694 CATCCCTGTTGCAAATTGCT 60 NA DesignNoJunction Rattus norvegicus 81 RGD1559972 ENSRNOG00000031273 ENSRNOT00000041326 2 1 1 60 11 82366302 82366320 CTTGAAGAGGAACCAGAGC 58 82366260 82366281 GACCAACGTCCATAATTTATCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061614.1 ENSRNOG00000032820 ENSRNOT00000048672 2 1 1 80 4 136078837 136078857 TGAGGAAGAAGTAGAGGAACC 59 136078899 136078955 GCTCCTCTAAATGTTCCGG 58 NA Rattus norvegicus 81 Tubgcp6 ENSRNOG00000006028 ENSRNOT00000007954 3 1 1 80 7 130082125 130082227 CTTCAAAGTAGTGACCAAGCTG 60 130082066 130082086 TTGTTGAAGTTGATCCGAAGC 60 NA Rattus norvegicus 81 Stim2 ENSRNOG00000002956 ENSRNOT00000004006 2 1 1 80 14 59244205 59272259 ACGAGAGTGATGAGTTTATCAG 58 59244146 59244166 TATCTTCTCTGTGCAGATGAC 57 NA Rattus norvegicus 81 Slc9a8 ENSRNOG00000008354 ENSRNOT00000012175 3 1 1 80 3 164202842 164205717 CATTGTCCTCACCAACACG 59 164205760 164205779 GCTTGTGAGAATGTTTGCCA 60 NA Rattus norvegicus 81 LOC680624 ENSRNOG00000029763 ENSRNOT00000043227 3 1 1 159 11 12276132 12276727 GTGGTAGTTCGCAGTAGCT 60 12276850 12276868 GGAAGGATGCCTCAGTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Hira ENSRNOG00000045770 ENSRNOT00000075164 2 1 1 80 11 86230065 86230572 CATCATGGATATTTCCTGGACTC 59 86230007 86230025 AAATCAAGGAACGCCACAG 59 NA Rattus norvegicus 81 Cycs ENSRNOG00000032885 ENSRNOT00000048429 2 1 1 60 18 62476531 62476550 GATGCCAACAAGAACAAAGG 58 62476490 62476511 TTTCCAAATACTCCATCAGGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adcyap1 ENSRNOG00000049882 ENSRNOT00000073432,ENSRNOT00000087405 1 2 2 80 9 121712376 121712396 GGTCTACGGGATAATAATGCA 58 121710267 121712334 TCTTCTGGTCTGATCCCAG 58 NA Rattus norvegicus 81 Ccl27 ENSRNOG00000039530 ENSRNOT00000060594 3 1 1 81 5 58159553 58160676 GAGAAGCAAGAAGCCTTGC 60 58159490 58159508 GTAGTCTGGTTGGGAGTGG 59 NA Rattus norvegicus 81 RGD1561118 ENSRNOG00000034060 ENSRNOT00000040561 1 1 1 60 10 76274623 76274641 TGTAGCAAAGCCTGAGGAC 60 76274581 76274599 TTGAAAGGCGTCTTCTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhb21 ENSRNOG00000033479 ENSRNOT00000040016 1 1 1 60 18 30589043 30589064 TTACAGACGTGAATGACAATCC 59 30589085 30589103 TGGATAGGGCTCATAAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1214 ENSRNOG00000031929 ENSRNOT00000071356 2 1 1 60 8 40449619 40449640 CTTTGATCCTTTCCAACATCCT 59 40449660 40449679 CTGAAGGCTTTCGATCTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem222 ENSRNOG00000008564 ENSRNOT00000011357 1 1 1 80 5 151465733 151467022 TTGTTTCGGAAGACAACATGG 60 151464376 151464394 GCCCACTAGCGTATACCTG 60 NA Rattus norvegicus 81 Thpo ENSRNOG00000050172 ENSRNOT00000073743 1 1 1 83 11 82851597 82851847 CTAGGAACCCAGCTTCCTC 59 82851894 82851912 AAGCAGTTGTTGCAAGCTC 60 NA Rattus norvegicus 81 Klrc2 ENSRNOG00000052467 ENSRNOT00000080299 3 1 3 81 4 163440923 163440943 ACTGGATTCTTTCGAAAGAGC 59 163440557 163440880 GCATCTCCGTTATCCTTGG 58 NA Rattus norvegicus 81 Smpdl3b ENSRNOG00000042326 ENSRNOT00000067905 3 1 1 82 5 150929969 150931906 CAAAGAAGGTGCCTTCTATTCTG 60 150929909 150929929 AGTACAGATTGGTGTTGAGGA 59 NA Rattus norvegicus 81 Ankrd1 ENSRNOG00000018598 ENSRNOT00000025258 3 1 1 80 1 254732429 254732447 TGCTTAGAAGGACACTTGG 57 254731166 254732385 GGATTCCAGCATATCTCGG 58 NA Rattus norvegicus 81 Tmem44 ENSRNOG00000001726 ENSRNOT00000002353 1 1 1 80 11 73747258 73747276 GAATACCTCCTTCAGGCCA 59 73747317 73748651 GGACAGAATGATGATAGCAAGG 59 NA Rattus norvegicus 81 Phgdh ENSRNOG00000019328 ENSRNOT00000056173 3 1 1 81 2 200491752 200491771 TAGAGGAGATCTGGCCTCTC 60 200491254 200491708 CTGTCATTGAGCAAGCCTG 59 NA Rattus norvegicus 81 Mthfd2 ENSRNOG00000010833 ENSRNOT00000014603 1 1 1 80 4 115007708 115007726 GCACACTCCCAAAGAACAG 59 115007349 115007664 ATGAGGTTTGGAATGCCAG 58 NA Rattus norvegicus 81 Fndc5 ENSRNOG00000030238 ENSRNOT00000047152 1 1 1 92 5 147325927 147326254 AGAACAAAGATGAGGTGACCA 59 147326308 147326326 ACATGAAGAGGACCACGAC 59 NA Rattus norvegicus 81 Sp140 ENSRNOG00000022800 ENSRNOT00000034603,ENSRNOT00000078987 3 2 2 80 9 92662975 92662994 GAAGTCAACAGAGTCTTCCA 57 92663034 92663341 GAACATACTCACACTTCAACTG 57 NA Rattus norvegicus 81 RGD1561636 ENSRNOG00000032847 ENSRNOT00000049811 1 1 1 60 4 59014304 59014322 TAAAGTTCAAGGTCCGCTG 58 59014262 59014282 TTCTCCTTGTCTGTGATAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC499781 ENSRNOG00000039315 ENSRNOT00000020660 2 1 1 80 3 11813740 11813995 TTACAGAACACTACTGAGATCTACC 60 11813684 11813705 GTGTAGGAAAGGTCTAGGAAGG 60 NA Rattus norvegicus 81 Ube2i ENSRNOG00000017907 ENSRNOT00000024406 1 1 1 68 10 14620592 14622774 GGCCTATACAATTTACTGCCA 58 14620544 14620562 AACTTCTTCGCTTGTGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Notch2 ENSRNOG00000018835 ENSRNOT00000025718 1 1 1 80 2 200307894 200308668 CAGGAGATAATAGGCTCTAAGGT 59 200308707 200308726 GTTCTTGAAGCACTGGTCTG 59 NA Rattus norvegicus 81 Tec ENSRNOG00000002278 ENSRNOT00000088441,ENSRNOT00000003125 2 2 2 80 14 38010392 38012932 GGACAGAAGACAAGGAAGG 58 38012974 38012994 ACTTTGTGTAAAGGGAGACTG 58 NA Rattus norvegicus 81 Hnrnpul1 ENSRNOG00000020683 ENSRNOT00000028100 3 1 1 80 1 82513931 82514394 CAGTATCAGCAGTATGCCCA 60 82513870 82513890 GTCGTAGTTCCCGTAGTAAGG 60 NA Rattus norvegicus 81 Igf2 ENSRNOG00000020369 ENSRNOT00000050760,ENSRNOT00000080246,ENSRNOT00000073850,ENSRNOT00000089171 3 4 4 107 1 215831593 215832828 CTTCTACTTCAGCAGGCCT 59 215831504 215831522 GCACAGTATGTCTCCAGGA 59 NA Rattus norvegicus 81 Adck5 ENSRNOG00000030334 ENSRNOT00000077588,ENSRNOT00000044893 2 2 2 80 7 117659246 117659264 TGGCTTCTTCATCTCCCTG 59 117659307 117659446 ACATACTTCGGGCTGTTCTC 60 NA Rattus norvegicus 81 Pknox2 ENSRNOG00000028856 ENSRNOT00000076232,ENSRNOT00000091894,ENSRNOT00000048875 2 3 5 90 8 39379836 39379854 TTACCATGGTAACCTCCCA 58 39378997 39379782 AGGTCAAGGTTAACCTGTG 57 NA Rattus norvegicus 81 LOC100909900 ENSRNOG00000061753 ENSRNOT00000086709 2 1 1 60 3 74766582 74766602 GTCATCATGTCACAGAAAGTC 57 74766542 74766560 AGGCACTGAACAGATAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mark4 ENSRNOG00000017069 ENSRNOT00000023392,ENSRNOT00000084882 1 2 2 80 1 80345147 80345806 CAAGAGAATTGAGGTGATGGT 58 80345087 80345105 TCGTTGTACTTCTGGTTGG 57 NA Rattus norvegicus 81 Auts2l ENSRNOG00000034287 ENSRNOT00000044800 3 1 1 81 12 27629400 27629418 GACAGTGAAAGCGCTAGTG 59 27629463 27647013 AAGGAGCTGAACTATCGCT 59 NA Rattus norvegicus 81 Tsen2 ENSRNOG00000060175 ENSRNOT00000081957 2 1 1 80 4 147471745 147478950 CCTAGAAGAGGCTTTCTTCC 57 147481742 147481761 TTCACTATGGTCAAAGGCTC 58 NA Rattus norvegicus 81 Dsg3 ENSRNOG00000016632 ENSRNOT00000091816,ENSRNOT00000022584 1 2 2 80 18 15674293 15675028 ACTACACATAGAGTCGGGAG 58 15674232 15674251 CATTCACGTTTGTACCTCCT 58 NA Rattus norvegicus 81 Dsg3 ENSRNOG00000016632 ENSRNOT00000091816,ENSRNOT00000022584 3 2 2 80 18 15667617 15670321 CTGAAGTTGGTTAAGGTTCTGG 59 15667558 15667578 GAACTCAGCTTTGTTCCTCAC 60 NA Rattus norvegicus 81 AABR07012635.1 ENSRNOG00000053190 ENSRNOT00000087593 3 1 1 82 2 200820328 200820347 TAACAAGGAGGCTCCAAGAG 59 200806169 200820283 GAGGCAGCATTCTGATGTC 59 NA Rattus norvegicus 81 LOC100361705 ENSRNOG00000049755 ENSRNOT00000048351 2 1 1 60 3 16571969 16571990 CCAAAGTGTCAGTACATCTAGC 59 16572010 16572029 CTCTCCTGGTTTCTGTTGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361705 ENSRNOG00000049755 ENSRNOT00000048351 3 1 1 60 3 16572065 16572083 AGCATCTGGTATCCCTGTC 59 16572107 16572125 GGTGAGGGTGAAGTCTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zadh2 ENSRNOG00000016239 ENSRNOT00000021729 3 1 1 129 18 80940037 80940055 CTATGCAGAAGCTGGTGGT 60 80940145 80946161 TTAATACCAACGAATCGGTTCC 59 NA Rattus norvegicus 81 Ndufa1 ENSRNOG00000040005 ENSRNOT00000061493 3 1 1 62 X 124515487 124515506 ATGGTATTTGATGGAACGCG 59 124513288 124515462 CCCTTGGACACATAGTAGC 57 NA DesignNoJunction Rattus norvegicus 81 LOC100360056 ENSRNOG00000032130 ENSRNOT00000044231 1 1 1 60 1 183763600 183763621 CCTACTATACCCAGGTTTACCA 59 183763561 183763579 ACGATGAGGGACATCAACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360056 ENSRNOG00000032130 ENSRNOT00000044231 2 1 1 60 1 183763599 183763621 CCTACTATACCCAGGTTTACCAG 60 183763561 183763579 ACGATGAGGGACATCAACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tdrd9 ENSRNOG00000053631 ENSRNOT00000086594 2 1 1 80 6 136636260 136648555 GAAACTTCTAGGCTTGTTCTGTC 60 136648594 136648613 TTCCACTCGTAGGGTTTCTC 59 NA Rattus norvegicus 81 Vta1 ENSRNOG00000011540 ENSRNOT00000075850,ENSRNOT00000064836 1 2 2 80 1 8839728 8839746 GTGGGATACAGATCCCTCC 59 8834857 8839685 TACTTGTTACACCTGTGCTG 58 NA Rattus norvegicus 81 Rn60_X_0749.1 ENSRNOG00000003008 ENSRNOT00000004016 3 1 1 60 X 74057900 74057918 GGCATGACTCTTGGTATGG 58 74057941 74057960 AAGGCTTAAGCTTATCCCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Celf4 ENSRNOG00000014503 ENSRNOT00000061151 1 1 1 81 18 17702196 17702215 TGTAACCTGCTCATCTACCA 58 17698990 17702152 CCACAAACTCGAAAGGGAG 59 NA Rattus norvegicus 81 Rn60_X_0735.1 ENSRNOG00000051070 ENSRNOT00000076184 3 1 1 60 X 72561857 72561878 GATGTTGCAAAGAAACTAGGAG 58 72561818 72561836 AGGCCTACTTGTCATCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msl1 ENSRNOG00000009643 ENSRNOT00000012812 3 1 1 84 10 86712036 86714573 AGAGATACGCTCCTTGCTC 59 86714621 86714639 GCTTGTGCCTTTCCTTCTC 59 NA Rattus norvegicus 81 Fhod3 ENSRNOG00000027230 ENSRNOT00000068139,ENSRNOT00000041961 1 2 2 80 18 17329420 17331614 GCAAATCTCTGCGAAGGAC 59 17331658 17331676 GTTCAGATGTGCCAACCAG 59 NA Rattus norvegicus 81 Nkain2 ENSRNOG00000029608 ENSRNOT00000047224 1 1 1 80 1 28126321 28155761 AGGACAGCTTTGATTTCATAGG 59 28155798 28155820 GTTGTAGTTGTAAGTGGGATGTC 60 NA Rattus norvegicus 81 Cad ENSRNOG00000026474 ENSRNOT00000039709 2 1 1 80 6 26659845 26659863 GTCACCTTTACTGCACTCC 58 26659693 26659803 AACAGATGAGACATCTGATCC 57 NA Rattus norvegicus 81 Faf1 ENSRNOG00000008523 ENSRNOT00000011765 2 1 1 80 5 129646954 129646974 TAATGATGAGACTCATGGCTG 58 129647015 129700293 CTTCACGTTCATCCTCATCC 59 NA Rattus norvegicus 81 Pdcd4 ENSRNOG00000014779 ENSRNOT00000020155 2 1 1 80 1 274634567 274634586 TTGAGAAGACGTTAACACCC 58 274634629 274640027 AATCCCTTAACATCTCCGC 57 NA Rattus norvegicus 81 Syt4 ENSRNOG00000017333 ENSRNOT00000023594 3 1 1 80 18 24178140 24178161 TTCAGGGATTGAATTGTCAGAC 59 24176341 24178100 CGTCCAGAAGACTTCTTAGC 58 NA Rattus norvegicus 81 Stag2 ENSRNOG00000029885 ENSRNOT00000044240,ENSRNOT00000082970 3 2 2 80 X 128584072 128584093 CTACTGAGCTACTGAAAGACTG 58 128584133 128584866 CTGTTAGAGCTTCCTCTCCA 59 NA Rattus norvegicus 81 Ccdc136 ENSRNOG00000007100 ENSRNOT00000060309 3 1 1 80 4 56684225 56684245 GTGCAGAGATGGAATTGAAGG 59 56684285 56686684 GGTGCAGTTCATCTTGTATCC 59 NA Rattus norvegicus 81 LOC679739 ENSRNOG00000049394 ENSRNOT00000072206,ENSRNOT00000076142 2 2 3 81 1 32574331 32581224 CGTCAGAAAGAGGTGAATGAG 59 32581265 32581285 CTATGATACGATGGTCCACCT 59 NA Rattus norvegicus 81 Rd3l ENSRNOG00000043031 ENSRNOT00000065971 3 1 1 83 6 136549315 136549333 TACCGAGCAAAGACAACTG 58 136548952 136549269 AGTTCTCGAAATCTGCTGAG 58 NA Rattus norvegicus 81 Csnk2a2 ENSRNOG00000011933 ENSRNOT00000016386 2 1 1 80 19 10000836 10002985 ACTATGACCAGCTTGTTCG 58 10003026 10003047 GGTCTATGTGGTACTTCTTCAG 58 NA Rattus norvegicus 81 LOC102547344 ENSRNOG00000030156 ENSRNOT00000041707 1 1 1 84 18 19275091 19275110 CTCAGGATCTCTTGCTACAG 57 19272294 19272799 TTATCATTGCAGGATCCTGTC 58 NA Rattus norvegicus 81 Srsf1 ENSRNOG00000050323 ENSRNOT00000073005 2 1 1 80 10 75336054 75336422 AGTGGTTGTTTCTGGACTG 58 75336463 75336484 TAACATACATCACCTGCTTCAC 59 NA Rattus norvegicus 81 Rbsn ENSRNOG00000011391 ENSRNOT00000015602 3 1 1 80 4 124064297 124066765 CCTTGGCAAATAAGCTCAC 57 124064235 124064253 GGACACTGTTAGGTGACTG 58 NA Rattus norvegicus 81 Cdkn1c ENSRNOG00000059500 ENSRNOT00000077409 1 1 2 92 1 216661987 216662551 AATGCGAACGACTTCTTCG 59 216661913 216661931 CACGTTAGGAGAGGGACAC 60 NA Rattus norvegicus 81 Cdkn1c ENSRNOG00000059500 ENSRNOT00000078944 1 1 2 90 1 216661984 216662513 CATCTCTGACTTCTTCGCCA 60 216661913 216661931 CACGTTAGGAGAGGGACAC 60 NA Rattus norvegicus 81 Sept14 ENSRNOG00000038495 ENSRNOT00000068460 1 1 1 84 12 30606207 30606225 TGAATGTTTGCCCACTCAG 58 30606273 30607030 AATTCCAGTTTCTCCCACG 58 NA Rattus norvegicus 81 Ust ENSRNOG00000016381 ENSRNOT00000022003 2 1 1 80 1 2426026 2436111 CAACTTCTCCAGGTTGGGA 59 2425964 2425988 TAGTTGGATAGAAATCTACTGACGG 60 NA Rattus norvegicus 81 Phlda3 ENSRNOG00000009068 ENSRNOT00000011999 2 1 1 111 13 52589582 52589600 AGAGTCTTGGAACTGGGAC 59 52589675 52591355 AAGTGGACAGAGAAGCTGG 59 NA InUTR Rattus norvegicus 81 Sap130 ENSRNOG00000016773 ENSRNOT00000022761 3 1 1 80 18 24449138 24458709 AAATATCCCAGTTGCTAAGGTG 59 24458749 24458768 CTCTCGGAAGGGTAATCAGG 59 NA Rattus norvegicus 81 Fam101a ENSRNOG00000001011 ENSRNOT00000001337 3 1 1 83 12 37047377 37047395 CTCCCTTCTATGCCCTGTC 59 37040780 37040799 GATTTGGGAAGAGGGAAGTG 58 NA DesignNoJunction Rattus norvegicus 81 LOC100912159 ENSRNOG00000048615 ENSRNOT00000071005 1 1 1 60 10 12213949 12213968 GAACCCTTTCATCTACAGCC 58 12213908 12213928 GAGCACTTTCTTTAGAGCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000048704,ENSRNOT00000036232,ENSRNOT00000035576,ENSRNOT00000036180,ENSRNOT00000036168,ENSRNOT00000047964,ENSRNOT00000036283,ENSRNOT00000007429 3 8 8 81 1 226484714 226488197 CCTTTCTATTTGAAGGGTTTCCC 60 226488236 226488256 CTGAAACGGTCATAATCCAGG 59 NA Rattus norvegicus 81 Kpna5 ENSRNOG00000030109 ENSRNOT00000046268 1 1 1 80 20 32513732 32513751 TCCTCAAGAGATGCGAAGAC 60 32513794 32515313 CGTTTGAACAACTGCTCCT 59 NA Rattus norvegicus 81 Olr1559 ENSRNOG00000050423 ENSRNOT00000070849 3 1 1 60 11 43699061 43699081 GGTAGGATTCTCAGATCACCC 60 43699102 43699121 GATGACAGAGAACACCAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krtcap3 ENSRNOG00000047941 ENSRNOT00000073236 1 1 1 112 6 26486161 26486264 GACTACTGAGCGTTACCGT 59 26485946 26485964 AGACAAGAGCAGGTTCACC 60 NA Rattus norvegicus 81 Wdr86 ENSRNOG00000025735 ENSRNOT00000079770,ENSRNOT00000040373 3 2 2 154 4 6947745 6947874 TCAACTGTCTCCAGGTACAC 59 6947991 6948009 CACCTTGTTGCTGAAGAGG 59 NA Rattus norvegicus 81 Gusb ENSRNOG00000000913 ENSRNOT00000041645,ENSRNOT00000001215 2 2 2 81 12 30212305 30212327 CTGGTATAAGATGTACCAGAAGC 59 30212368 30214149 AGGTGGATCCTCATGAAGC 59 NA Rattus norvegicus 81 Cct6b ENSRNOG00000007523 ENSRNOT00000009944 3 1 1 80 10 70087127 70087642 ATTTGAGTACACATTGGGCG 59 70087066 70087086 TTGACCAACAAGGTAACAGAG 58 NA Rattus norvegicus 81 Degs2 ENSRNOG00000011716 ENSRNOT00000015855 1 1 1 80 6 132595052 132595071 CTTCAATGTTGGCTACCACG 60 132592347 132595009 GCAATCATCCGTACCAGTG 59 NA Rattus norvegicus 81 Fam219a ENSRNOG00000039559 ENSRNOT00000060642 3 1 1 83 5 57900744 57900765 CCCTAATAAAGGCTACTCTTCG 58 57900042 57900700 AAATCGTCATCGCTGTCTG 58 NA Rattus norvegicus 81 Zfp560 ENSRNOG00000048394 ENSRNOT00000071010 3 1 1 89 8 21384105 21384124 CAACTTAACACCAGAGGGAC 58 21383616 21384055 TCCATTGTGGCTATTTGACAG 59 NA Rattus norvegicus 81 Ociad1 ENSRNOG00000002205 ENSRNOT00000002996 1 1 1 80 14 37468166 37470440 AGGAATACTGTCAAGTCATCCA 59 37467222 37467241 TTTCCAGCAAAGTATCCCAC 58 NA Rattus norvegicus 81 Olr951 ENSRNOG00000047710 ENSRNOT00000051670 1 1 1 60 7 6644992 6645011 CCTATGATCGATACGTTGCC 58 6645032 6645052 CTGCTGTTCATGATGATAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000026350,ENSRNOT00000078494,ENSRNOT00000088168,ENSRNOT00000081017 1 4 6 80 1 41561493 41561511 ATGATGAACCTGCAGGGAG 60 41561551 41587201 GGATAGAAATGTGTACACTCCAG 59 NA Rattus norvegicus 81 Usp39 ENSRNOG00000010930 ENSRNOT00000015562 2 1 1 80 4 100202721 100205700 GGATACTATTAATAGGAGTGTGCTG 59 100202665 100202683 GCATATGCATTGATGTGCG 58 NA Rattus norvegicus 81 Phkg1 ENSRNOG00000000920 ENSRNOT00000001222 3 1 1 81 12 30461196 30461216 ACATGAACATCAAGCTCACTG 59 30461259 30462216 GGAGTCCCACAAACCTCTC 60 NA Rattus norvegicus 81 Mir3559 ENSRNOG00000050872 ENSRNOT00000074039 3 1 1 70 X 75459303 75459327 TGACAGACTTAGTACTACATGATCC 60 75459257 75459275 TACTCACTGCACGACAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lemd3 ENSRNOG00000024027 ENSRNOT00000039532 2 1 1 80 7 63001189 63002409 CTGTTGTGCTTAGGTGTAGTC 59 63001129 63001148 TGTCTCTTCTTCCTCCTTCG 59 NA Rattus norvegicus 81 Cpe ENSRNOG00000043387 ENSRNOT00000064297 1 1 1 81 16 26989173 26989191 TGAGAAAGCAGCATCTCAG 58 26990865 26990888 GAAGTTCCGGTTCAGTTCC 59 NA Rattus norvegicus 81 LOC100362277 ENSRNOG00000038057 ENSRNOT00000043027 2 1 1 60 19 58412379 58412397 AGTCCAAGAACCACACCAC 60 58412420 58412439 TTCTTGATGCCGTTTCTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajc9 ENSRNOG00000006619 ENSRNOT00000009009 2 1 1 82 15 4359535 4359553 CAAAGAAGCAGAGCTGAGC 59 4359599 4359943 TCTGTCTGCTCTGGATGAG 59 NA Rattus norvegicus 81 AABR07065789.2 ENSRNOG00000031918 ENSRNOT00000040523 2 1 1 86 6 141365023 141365122 CTCTTCCTGGTGTCCTATCC 59 141364956 141364974 AACAGGTGACAGACAGTGG 60 NA Rattus norvegicus 81 Zfp697 ENSRNOG00000049090 ENSRNOT00000072189 1 1 1 110 2 200603652 200606168 CCACTGTCTGTTCAGAGGG 60 200606242 200606260 CTGACAGTCCTGGGAACAG 60 NA Rattus norvegicus 81 Ect2 ENSRNOG00000024365 ENSRNOT00000018055 2 1 1 80 2 112770631 112774028 ATCTTCCTTAGCAGGTATTCCA 59 112770572 112770594 CGACTTAATGTATGACTTCTCCG 59 NA Rattus norvegicus 81 Trappc1 ENSRNOG00000037627 ENSRNOT00000087003,ENSRNOT00000057079 3 2 2 80 10 55925363 55925383 GAGTACAAGCTGATGTATGGG 58 55925425 55925783 GCCATCCTTCATGTCTAGC 58 NA Rattus norvegicus 81 Psmc2 ENSRNOG00000012026 ENSRNOT00000016450 2 1 1 80 4 9873275 9873293 AGTTCGTGGTGGATCTCAG 59 9872861 9873232 ATTTATTTCTGTCCACGCCG 59 NA Rattus norvegicus 81 Mir18a ENSRNOG00000035645 ENSRNOT00000053768 2 1 1 60 15 100180040 100180063 TCTAGTGCAGATAGTGAAGTAGAC 59 100180082 100180100 CTTATGCCAGAAGGAGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc35d2 ENSRNOG00000027229 ENSRNOT00000036212 1 1 1 80 17 1619264 1619911 AAATATTTGCATGGCAGGTG 57 1619203 1619222 TCATCCACAGGTTGTTTAGG 58 NA Rattus norvegicus 81 Rnase1l1 ENSRNOG00000025615 ENSRNOT00000033809 3 1 1 60 15 28044164 28044182 TTTCACTGCTTGTCCTGGT 60 28044122 28044140 ACTGAAGGTTTCCTACCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcb5 ENSRNOG00000006398 ENSRNOT00000050893,ENSRNOT00000074197 2 2 2 80 6 146830873 146830891 ATTCAAACTGCAGCAATGG 57 146826759 146830830 AGCTTCTGTTGCTATCTTCC 58 NA Rattus norvegicus 81 Uqcrc1 ENSRNOG00000032134 ENSRNOT00000042114 1 1 1 80 8 117683611 117684811 CTTTCAAGGGAACAAAGAACC 58 117684853 117684871 TGTAGGCATTAAGATGGGC 57 NA Rattus norvegicus 81 Uqcrc1 ENSRNOG00000032134 ENSRNOT00000042114 3 1 1 82 8 117683611 117684811 CTTTCAAGGGAACAAAGAACC 58 117684854 117684873 GCTGTAGGCATTAAGATGGG 59 NA Rattus norvegicus 81 Akap5 ENSRNOG00000006410 ENSRNOT00000008416 1 1 1 119 6 99356681 99356699 GAATCTGATGCACTGAGCC 59 99356781 99359501 ATTTAAAGCCCAACCTGGAG 58 NA InUTR Rattus norvegicus 81 Stx8 ENSRNOG00000003849 ENSRNOT00000005204 1 1 1 80 10 54516281 54518241 GAAGACACCTAAGCTTACCCT 59 54518281 54518301 AGTAAGTCCTTCAAGAGGTCG 59 NA Rattus norvegicus 81 Crlf2 ENSRNOG00000049828 ENSRNOT00000075656 3 1 1 99 14 1460200 1460218 TTTGCCATGACCTGGAGAG 60 1459605 1460138 TGGTTTCCATACCGGAACTC 60 NA Rattus norvegicus 81 Mir429 ENSRNOG00000035595 ENSRNOT00000053718 1 1 1 60 5 173488393 173488412 CTGCTGATGGATGTCTTACC 58 173488352 173488376 CAGACAGTATTAGACAGATACATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spata5l1 ENSRNOG00000000169 ENSRNOT00000043414 2 1 1 80 3 114758235 114758253 GACGATGCCTTGTTACGAC 59 114758296 114759271 AATAGAAAGCCTGCCCTCTC 60 NA Rattus norvegicus 81 LOC100912024 ENSRNOG00000032944 ENSRNOT00000046475 1 1 1 60 5 116973374 116973393 CCCACGACAATACAAGATCC 59 116973414 116973434 CCTATCCTTTACGTCCTTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myo7b ENSRNOG00000015035 ENSRNOT00000021405,ENSRNOT00000090390 2 2 2 80 18 24749722 24750020 GATCACAGACAAGGTCATCAG 59 24749662 24749682 TTCTTCACCCAGTCAGATACC 59 NA Rattus norvegicus 81 Atp6v1e1 ENSRNOG00000011905 ENSRNOT00000016495 3 1 1 91 4 153354330 153357166 CTGAGGACATAGCTGGTGG 60 153354257 153354275 GGCTATTAGGTCCAGTCGG 59 NA Rattus norvegicus 81 Ccr5 ENSRNOG00000049115 ENSRNOT00000075564 2 1 2 87 8 133197105 133197125 GTATCCAAGAGCTTGATGAGG 58 133197173 133213284 GCAATTTGTTTCACACTGGT 58 NA Rattus norvegicus 81 Bsn ENSRNOG00000030714 ENSRNOT00000042528,ENSRNOT00000082113 3 2 2 146 8 116882792 116883102 CAGTGAAGCGTATCACCTG 58 116882664 116882682 TAGTCATGGTAGCTGTGCC 59 NA Rattus norvegicus 81 Dlx5 ENSRNOG00000010905 ENSRNOT00000014946 2 1 1 91 4 32389642 32391482 CCAGCCAGAGAAAGAAGTG 58 32389569 32389589 AGCTGGAATAAATAGTCCTGG 57 NA Rattus norvegicus 81 Prp15 ENSRNOG00000005383 ENSRNOT00000007139 3 1 2 82 4 166211730 166213358 GGAACCAGAACTTCAGAGC 58 166213404 166213422 CATTAGCAGGTGGTCTTGG 58 NA Rattus norvegicus 81 Hus1b ENSRNOG00000052502 ENSRNOT00000084871 3 1 1 60 17 34694249 34694267 TCTCAAGGCAAAGACCCAG 60 34694286 34694309 GTAGAAGTTTCCTATTATCCACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp788 ENSRNOG00000014380 ENSRNOT00000019278 2 1 1 81 1 98228623 98229167 GAAGTCAGAGAATGTGTACATGTG 60 98229203 98229225 GGTGTCTTGGTAAAGATTTCTCC 60 NA Rattus norvegicus 81 Il2rg ENSRNOG00000003954 ENSRNOT00000077024 1 1 3 80 X 71168576 71168597 CGAGTATATGAATTGCACTTGG 58 71168301 71168537 GATCCCTTGTACCTATAGTGC 58 NA Rattus norvegicus 81 Decr2 ENSRNOG00000050424 ENSRNOT00000077826,ENSRNOT00000027518 1 2 3 80 10 15453767 15454362 GTCTGCGGAGATTAGGAGG 59 15453705 15453723 TCTTGGTTCCGAGTCTTGG 59 NA Rattus norvegicus 81 AABR07036035.1 ENSRNOG00000022784 ENSRNOT00000029702 3 1 1 115 12 31759567 31759585 TGGATGTGTATTGGAGCCG 60 31759465 31759485 TGATGGGTCGATGAAGGTG 60 NA Rattus norvegicus 81 Hbe2 ENSRNOG00000030784 ENSRNOT00000048484 1 1 1 80 1 169001714 169001735 GGCTGCTATCATAAGCATATGG 59 169001324 169001675 TATACAATGAGGAGCCTTCCC 59 NA Rattus norvegicus 81 Sct ENSRNOG00000017873 ENSRNOT00000024094 2 1 1 91 1 214265052 214265174 TACAGGATTGGCTTCTGCC 60 214264979 214264997 CTCTGAATGGTCGACAGCA 60 NA Rattus norvegicus 81 Kdm4c ENSRNOG00000006644 ENSRNOT00000009083,ENSRNOT00000080303 1 2 2 80 5 90870974 90870992 TGGCACACTGAGGATATGG 59 90871033 90880583 TGGAGGTATAGCATACCAAGAC 59 NA Rattus norvegicus 81 Dnah11 ENSRNOG00000005451 ENSRNOT00000007233 2 1 1 80 6 145943683 145944929 ATGGATGATAACAAGGTGCTG 59 145943623 145943641 GGTCTCAAACAGAAGCCTC 58 NA Rattus norvegicus 81 Fbxl13 ENSRNOG00000043035 ENSRNOT00000065039 2 1 1 80 4 10039954 10052644 TGGATGACCAGCTGATGAC 60 10052684 10052706 CGAAGTGGCTCTTTACTAAATGG 60 NA Rattus norvegicus 81 Scrg1 ENSRNOG00000013228 ENSRNOT00000017888 1 1 1 60 16 36130624 36130643 AATTTCAGCGAATTGCTCTG 58 36127718 36127737 CAAAGGAGATCTTTGGTCCA 58 NA DesignNoJunction Rattus norvegicus 81 Smco4 ENSRNOG00000011162 ENSRNOT00000014827 3 1 1 94 8 14060554 14060573 GAAATCAGTTGACCCACGTC 59 14079308 14079326 CTTGAAGAAAGGGCCACAC 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_10_0701.3 ENSRNOG00000057143 ENSRNOT00000077901 2 1 1 60 10 70380616 70380634 AGAGGGAAGTACAGGTGAG 58 70380574 70380592 ATGAAAGAGGAGTGGTGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bub1 ENSRNOG00000032778 ENSRNOT00000051783 2 1 1 80 3 120392885 120392904 GAAATTGCATCAAGTGGTGG 58 120391019 120392845 ACACATACTAGATTAGCGTCAG 58 NA Rattus norvegicus 81 LOC100362798 ENSRNOG00000026875 ENSRNOT00000034088 3 1 1 62 7 62317520 62317538 ATCCTGTGGGATTGGTGTG 60 62317476 62317497 TGATATAAGACACCCAGTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp6r2 ENSRNOG00000026425 ENSRNOT00000078423,ENSRNOT00000011070 3 2 2 80 7 130259159 130259178 ACCAATCATGGCAGTAACCA 60 130259221 130259328 GCATCTGTCTTCCTGTCCT 59 NA Rattus norvegicus 81 B3galt2 ENSRNOG00000003251 ENSRNOT00000004342 1 1 1 149 13 60436533 60441102 AAAGAAAGAATGACGTCGAGG 59 60441213 60441231 CTTCTCCTCCACTGAAGCA 59 NA InUTR Rattus norvegicus 81 Fam53c ENSRNOG00000020261 ENSRNOT00000027499 2 1 1 81 18 27562825 27567168 TCCAGCTTGTGTCTGAAGG 60 27567213 27567231 CTGAAGTTGAGGCTGTCCT 59 NA Rattus norvegicus 81 Mirlet7b ENSRNOG00000035636 ENSRNOT00000053759 3 1 1 67 7 126590630 126590649 GGGTGAGGTAGTAGGTTGTG 60 126590674 126590697 AGGTTGTATAGTTATCTTCGGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcoln3 ENSRNOG00000015024 ENSRNOT00000020230 3 1 1 80 2 251990991 251991009 AGCTCAAAGCCATCAACCT 60 251991047 251994645 CGAATGTTATAGTCAGGGTAAAGTC 60 NA Rattus norvegicus 81 Clec2e ENSRNOG00000052128 ENSRNOT00000077791 3 1 1 82 4 162855675 162855693 CTTCTCTGCTGCTATCGAG 58 162853046 162855630 TCCTTTCTCACTGACAAAGC 58 NA Rattus norvegicus 81 AABR07002659.1 ENSRNOG00000034000 ENSRNOT00000024155 1 1 1 80 1 79290652 79291978 CCATGTGTACAGTAACATTGAG 57 79292114 79292133 AAAGCTAATGAGCATCCTCC 58 NA Rattus norvegicus 81 Gsta5 ENSRNOG00000000201 ENSRNOT00000044944 1 1 1 80 8 85556157 85556176 TGCTTCACTACTTCAATGCC 59 85556218 85559032 TCTCTTCAAACTCCACTCCT 58 NA Rattus norvegicus 81 Plk1 ENSRNOG00000018815 ENSRNOT00000025629 3 1 1 80 1 192120321 192123693 CAGTCCTTAATAAAGGTGTGGAG 59 192123733 192123751 CATTTGTCTCCCGAACCAC 59 NA Rattus norvegicus 81 S1pr3 ENSRNOG00000014524 ENSRNOT00000085581 3 1 2 141 17 13802503 13802700 ACTGTTGAGCTTCATCGTC 58 13802380 13802399 GTTGACCTTGTAGGCTATGC 59 NA Rattus norvegicus 81 Gykl1 ENSRNOG00000029096 ENSRNOT00000051142 2 1 1 60 18 47659420 47659440 TAGTCTGGGACAAGTTCACTG 60 47659462 47659480 CTTAGGTCAAGCCACACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nlgn3 ENSRNOG00000003812 ENSRNOT00000005077 1 1 1 80 X 71202736 71202754 TCGTCGCCACTTATATCCA 58 71202798 71203450 TCCGCTTTACATCTTCCGT 59 NA Rattus norvegicus 81 Olr1558 ENSRNOG00000047976 ENSRNOT00000048343 2 1 1 60 11 43687492 43687511 AGTACCACACCATGATGTCC 60 43687532 43687552 GCTATGAATATGCCCATGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gps1 ENSRNOG00000046698 ENSRNOT00000085821,ENSRNOT00000071645 1 2 2 80 10 109969453 109969559 CAATGTCATCAAGGTCAGTGTC 60 109969600 109969618 TCTGGAGTAGACTCAGCCT 59 NA Rattus norvegicus 81 Atp1a1 ENSRNOG00000030019 ENSRNOT00000040430 2 1 1 80 2 204011881 204011899 CTCCATGATTGACCCTCCT 59 204010903 204011839 ACCATGATGACCTTAATCCCA 59 NA Rattus norvegicus 81 L3mbtl2 ENSRNOG00000024743 ENSRNOT00000034998 2 1 1 81 7 122915912 122915930 CAGAGCTCCAAGAAACCCT 59 122915975 122916658 CAGCGATGATGTCATCAGG 59 NA Rattus norvegicus 81 Mir3564 ENSRNOG00000046739 ENSRNOT00000072413 1 1 1 60 19 54632037 54632057 TCTGTATCCCTCAAGCTTTCC 60 54632078 54632097 TCTTCCCTCTTTGCATTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 C3ar1 ENSRNOG00000009211 ENSRNOT00000012216 2 1 1 80 4 155685932 155690768 ACCTCAGTGCTCTTGACTG 59 155685870 155685888 TAAACAGAGGCCGTGAGTG 60 NA InUTR Rattus norvegicus 81 Raver1 ENSRNOG00000020710 ENSRNOT00000046983 3 1 1 115 8 22111715 22111733 CTCGATCCGGAAGAGATCC 59 22110249 22111638 TCATGTACTTCCTGGTTGGTC 60 NA Rattus norvegicus 81 LOC100911456 ENSRNOG00000047911 ENSRNOT00000075212 3 1 1 80 5 164550955 164550974 GCCTACTTCTCTATGCTGCA 60 164550813 164550912 TGGGAATACAGCTTCAGGG 59 NA Rattus norvegicus 81 Olr1104 ENSRNOG00000031284 ENSRNOT00000047272 2 1 1 60 7 139929366 139929385 ACCGTACACAACTACAACTG 58 139929325 139929343 AGACATCAGAGCAGGAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Irf2bpl ENSRNOG00000011026 ENSRNOT00000014645 3 1 1 60 6 110902015 110902033 AGTCGGGTCTAATGTACCT 57 110901973 110901991 CCCAGCTAAGATAGTTGCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100359993 ENSRNOG00000048458 ENSRNOT00000072900 1 1 2 73 6 139637184 139637312 AAAGGTGTCCAGTGTGAGG 60 139637129 139637147 AGTTTCAGGGACCTTCCAG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1311447 ENSRNOG00000016606 ENSRNOT00000022308 1 1 1 97 9 94567579 94567597 AGAATTTGCAGTCTCTGGC 58 94567658 94567801 CAAGTGATCCTCCATCCTG 57 NA Rattus norvegicus 81 AABR07065699.5 ENSRNOG00000058753 ENSRNOT00000075467 3 1 1 135 6 139523662 139523680 TCTCAAATCCCGACTGAGC 60 139523779 139524168 AACTGCAGTCTGGACTTCC 60 NA Rattus norvegicus 81 Zfp629 ENSRNOG00000018877 ENSRNOT00000024969 1 1 3 60 1 198899311 198899329 CGGAGATGGGTAACATTCC 58 198895797 198895819 CTTCCTTCTCTTCATTCTTCTGC 60 NA DesignNoJunction Rattus norvegicus 81 Atp10a ENSRNOG00000056228 ENSRNOT00000080907 2 1 1 80 1 116101307 116101701 CTATGCAGGACATGAAACCA 58 116101743 116101762 TTCATCTGCCTTTCAAGCTG 59 NA Rattus norvegicus 81 AABR07012658.1 ENSRNOG00000045536 ENSRNOT00000071087 2 1 1 117 2 201677913 201677931 CTTCACAGCGATGAGAGGA 59 201677795 201677832 TAGAGCCATGTTTGCCCTC 60 NA Rattus norvegicus 81 Pcdh15 ENSRNOG00000000606 ENSRNOT00000067633 3 1 1 80 20 15275768 15279487 AAGACATAGAAGACGTGCCA 59 15271663 15271682 CCGAGGTGTAATCATTCAGG 58 NA Rattus norvegicus 81 Apc ENSRNOG00000020423 ENSRNOT00000027691,ENSRNOT00000090264 1 2 2 80 18 27097241 27097259 CATTGAAAGTGGAGGTGGG 59 27097300 27098771 TCTCTTAGGATTTGTCTGTGGT 59 NA Rattus norvegicus 81 Elac2 ENSRNOG00000003424 ENSRNOT00000004722 3 1 1 80 10 51499972 51500545 CACATGAAGGTCTGCTTTGG 60 51500587 51500606 AATGTCATCTGCAAACAGGG 59 NA Rattus norvegicus 81 Spry1 ENSRNOG00000025371 ENSRNOT00000067034 3 1 2 88 2 124403436 124403454 ACGATTCTGTCCCTAGACC 58 124403506 124404688 AACTGTGTTGGTCTTCTCG 58 NA Rattus norvegicus 81 Cplx1 ENSRNOG00000000060 ENSRNOT00000061720 3 1 1 107 14 2219657 2224828 AGGGCATACGAGATAAGTATGG 59 2224896 2224914 CCTTCTTGGGTCGAGTCAG 60 NA Rattus norvegicus 81 Gtf2a2 ENSRNOG00000056701 ENSRNOT00000084148,ENSRNOT00000085496 1 2 2 83 8 76426399 76427600 TCATACAGTCTCAACAGATCAC 58 76427641 76427662 GAGCCAATGCTGAATTTATAGC 58 NA Rattus norvegicus 81 Spock1 ENSRNOG00000012747 ENSRNOT00000061187 1 1 1 80 17 7796316 7797163 GTAAGCTGTGAAGAGGAGCA 60 7797206 7797224 GTCGTCTAGGTCATCCAGC 60 NA Rattus norvegicus 81 Fbxo2 ENSRNOG00000009409 ENSRNOT00000012670 3 1 1 81 5 164977161 164977179 GAGCATGAAGATGTGCTGG 59 164977224 164977442 TGTGGGAGATCTCCATCCA 60 NA Rattus norvegicus 81 Srf ENSRNOG00000018232 ENSRNOT00000061430 1 1 1 80 9 16738461 16740353 CATGAAGAAGGCTTATGAGCTG 60 16740394 16740412 TACACATGGCCTGTCTCAC 59 NA Rattus norvegicus 81 Omd ENSRNOG00000046658 ENSRNOT00000074323 3 1 1 75 17 14636908 14636932 CCAAGGAATTTGGAACATCTATACC 60 14636114 14636135 GAGAAGGACACATCATTGTCAC 59 NA DesignNoJunction Rattus norvegicus 81 Abcd2 ENSRNOG00000015538 ENSRNOT00000021064 3 1 1 80 7 132301694 132301715 AAGATATTTCAGGCTGCTATCG 59 132297859 132301654 GGTGTGGTATTTCCACAGAG 58 NA Rattus norvegicus 81 Olr1111 ENSRNOG00000031503 ENSRNOT00000043467 1 1 1 60 7 140108319 140108337 CTCTACACAGTGCTCACCC 60 140108360 140108379 CCTCTTGGTTCTTGAGACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prp2 ENSRNOG00000005379 ENSRNOT00000007124 3 1 1 83 4 166076240 166077922 GGAACCAGAACTTCAGAACC 59 166077966 166077986 CTATTACCAGGTGGTCTTGGT 59 NA Rattus norvegicus 81 Large ENSRNOG00000013742 ENSRNOT00000090886,ENSRNOT00000064105 3 2 2 80 19 12504551 12504569 AGCACACCCTACATGTTCC 60 12491547 12504508 GATGACAGACTTCCTGAGGT 59 NA Rattus norvegicus 81 Erp44 ENSRNOG00000005841 ENSRNOT00000007711 2 1 1 83 5 63970523 63970542 CAGACTACATCAGGCAACAG 58 63969312 63970479 TCTTACTGCGATCAAGATTGG 58 NA Rattus norvegicus 81 Des ENSRNOG00000019810 ENSRNOT00000026860 1 1 1 80 9 82561903 82563321 TCTCAACTTCCGAGAAACCA 59 82563361 82563382 TCAATGGTCTTGATCATCACTG 59 NA Rattus norvegicus 81 Acvr2a ENSRNOG00000005334 ENSRNOT00000007404 3 1 1 80 3 33028467 33028487 TGAGGATAGATATGTACGCCA 58 33028529 33030655 CATCTACAGGTCCATCTGC 57 NA Rattus norvegicus 81 F13b ENSRNOG00000012613 ENSRNOT00000016944,ENSRNOT00000080335,ENSRNOT00000089913 2 3 3 80 13 56603687 56604287 CTGCAGGAAAGAACAAGAGAC 59 56604326 56604347 ACTTTGAATGTCCTCTGTATCG 58 NA Rattus norvegicus 81 Rbm44 ENSRNOG00000024878 ENSRNOT00000038536 3 1 1 80 9 98293396 98293414 GAGTCCAAGCTGTTGTCTG 59 98293553 98293685 ATTTGCTCCTGAAAGGCTG 58 NA Rattus norvegicus 81 Tmem216 ENSRNOG00000020692 ENSRNOT00000028079 3 1 1 80 1 226605253 226605672 TTTCCTGTACAAAGGTCTCC 57 226605192 226605210 CCAAGATAAAGGAGCAGCA 58 NA Rattus norvegicus 81 LOC100910876 ENSRNOG00000060145 ENSRNOT00000089901 2 1 1 60 10 44471828 44471846 GACACCTTCCTCTTCACAG 58 44471786 44471806 TGATGTTTCCTATGAGAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam19a2 ENSRNOG00000004180 ENSRNOT00000005537 3 1 1 81 7 66056896 66058051 GTGTGGATGCATCCATAGTG 59 66056834 66056855 GGAAGGACTTTACATTCCTCTC 58 NA Rattus norvegicus 81 Mrpl14 ENSRNOG00000019734 ENSRNOT00000087528,ENSRNOT00000026716 3 2 2 71 9 17689237 17689255 CTATGTCAGAGGAGCCGTC 59 17688191 17688209 GTCATCTTCTGGATTGCGC 59 NA DesignNoJunction Rattus norvegicus 81 Ly6g6d ENSRNOG00000000844 ENSRNOT00000001120 3 1 1 102 20 5064203 5064221 TGATCACCTGTGGTGAAGG 59 5062036 5062054 TAGTGATGGCTCAAGGTCG 59 NA DesignNoJunction Rattus norvegicus 81 Slc25a29 ENSRNOG00000004351 ENSRNOT00000005753 3 1 1 80 6 132738581 132738880 TCATCAAGCAAGAAAGTGTGC 60 132738521 132738540 CCAGTGCATTGATGAAGGTG 60 NA Rattus norvegicus 81 Speg ENSRNOG00000019850 ENSRNOT00000026941,ENSRNOT00000065076 2 2 2 86 9 82597334 82597352 CCTACCATGAAGCCCAGTC 60 82597400 82597740 CATGAGTGAGACCTTGAAGGT 60 NA Rattus norvegicus 81 Alkbh6 ENSRNOG00000047943 ENSRNOT00000071180 3 1 2 95 1 90959135 90959153 CAAAGTGTCTGACCTCAGC 59 90958844 90959076 TCTTCATGAGGCATGATGC 58 NA Rattus norvegicus 81 Rn60_11_0375.8 ENSRNOG00000049380 ENSRNOT00000075105 2 1 1 61 11 33890001 33890019 CCAGGCTGTCTGTACAGAG 60 33890044 33893014 AGACATTCACCACTCTGCC 60 NA DesignNoJunction Rattus norvegicus 81 Rn60_11_0375.8 ENSRNOG00000049380 ENSRNOT00000075105 3 1 1 87 11 33890043 33893013 AGGCAGAGTGGTGAATGTC 60 33893064 33893082 CTCGCTTCGAAACTTCTGC 60 NA DesignNoJunction Rattus norvegicus 81 Prpf31 ENSRNOG00000061039 ENSRNOT00000091739 3 1 1 80 1 64161766 64161785 CAAGAGGAGACACAACTGGA 59 64161597 64161726 CTCAGCAAACATCTTGCTATCC 60 NA Rattus norvegicus 81 RGD1561919 ENSRNOG00000033451 ENSRNOT00000047417 3 1 1 60 19 14093421 14093440 GTGTGATCACCATCATGCAG 59 14093463 14093481 CTGTTCAAGAACCAGTCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rgs2 ENSRNOG00000003687 ENSRNOT00000005156 3 1 1 84 13 60846999 60847018 ATCACCACAGAAACTGTCCT 59 60846690 60846957 GTCTATGTTTATCTCTTTGGGAGC 59 NA Rattus norvegicus 81 Sept5 ENSRNOG00000029912 ENSRNOT00000051680,ENSRNOT00000041168 1 2 2 80 11 86518398 86518500 GCTGAAGGACAGGATACGA 59 86518541 86518562 TCTTCATCTGAGTCACATTCTG 58 NA Rattus norvegicus 81 Chmp2a ENSRNOG00000043328 ENSRNOT00000030931 1 1 1 80 1 65543071 65543167 GAACAGACAGCTGAAATTACCC 60 65543205 65543226 TCCTTCATGTCCATGATCTCTG 60 NA Rattus norvegicus 81 AABR07021066.1 ENSRNOG00000039332 ENSRNOT00000060277 1 1 1 80 13 55701238 55701257 AAGAGGAGGAAGAAGATGGG 59 55701141 55701196 CATCCTCAGCTTTATCTCCG 58 NA Rattus norvegicus 81 Lhx9 ENSRNOG00000010357 ENSRNOT00000014218 1 1 1 92 13 55870437 55870455 CTGTGAATGTAAGCTGGCC 59 55869176 55870385 GAGAACCTTCTGTAGTAATCCTC 58 NA Rattus norvegicus 81 Hist1h2af ENSRNOG00000022146 ENSRNOT00000022965 2 1 1 73 17 43627506 43627524 TACAAGGGCAACTACTCGG 59 43627451 43627469 GTCAGGTACTCCAGCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zdhhc17 ENSRNOG00000003803 ENSRNOT00000005078 2 1 1 80 7 53665214 53669680 CTGACAAGGAATTTCGGCA 59 53665152 53665171 TCAGGTCTGCTATAAACCCA 58 NA Rattus norvegicus 81 Ifnk ENSRNOG00000022990 ENSRNOT00000034527 2 1 1 88 5 50631723 50631741 CTGGAAGATTGTCGTGGTG 59 50631791 50633851 GCTTGAAGCTGGATGATTCTC 60 NA InUTR Rattus norvegicus 81 Zcchc9 ENSRNOG00000051682 ENSRNOT00000086300 1 1 1 95 2 20910548 20912024 AGAACTCAGATCGAATCATCAC 58 20910474 20910492 TAGGTTTCTGTGGTTTGGG 57 NA Rattus norvegicus 81 Nek7 ENSRNOG00000000657 ENSRNOT00000090162,ENSRNOT00000000817 2 2 2 80 13 55502920 55515771 GCACATTCTTTAGTGGGCAC 60 55502859 55502882 GATGTCAGACTTGAAGTTGTATCC 60 NA Rattus norvegicus 81 Selo ENSRNOG00000060120 ENSRNOT00000078620 1 1 1 80 7 130077674 130077694 CTCAACACTGACAACATGAGC 60 130077734 130078371 GTCAGGGTCATACCTATCCAG 59 NA Rattus norvegicus 81 Olr1425 ENSRNOG00000049799 ENSRNOT00000047974 1 1 1 60 10 44174279 44174300 CTGTGGTCATTCTCTTCTATGG 58 44174240 44174258 TGGAGGGAGTTAGGTAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spred3 ENSRNOG00000051915 ENSRNOT00000083817 1 1 1 86 1 88110108 88110543 CTCAGCCAGAATCCTCCTC 59 88110040 88110058 TACTTAGGGCAGACAAGGG 58 NA Rattus norvegicus 81 Anln ENSRNOG00000014343 ENSRNOT00000019601,ENSRNOT00000071846 2 2 2 80 8 23342601 23344591 GGTTGAATTGTTTGAGCACAG 59 23338738 23338759 AATTGGCCAGATTTATCCTTCC 59 NA Rattus norvegicus 81 Dyrk1b ENSRNOG00000019254 ENSRNOT00000087157,ENSRNOT00000026107 3 2 2 81 1 85116537 85117787 ACTACATAGTACACCTGAAGCG 60 85117828 85117847 TACAGGTTGTAGGACAGCAG 59 NA Rattus norvegicus 81 Mgat4c ENSRNOG00000004149 ENSRNOT00000005523 2 1 1 80 7 44018086 44018110 CTTCTCAGGAACTATAAATGTCACC 59 44018145 44022170 AGTCCAATTGTGAGATATCGCT 60 NA Rattus norvegicus 81 Zfp352 ENSRNOG00000033600 ENSRNOT00000049470 2 1 1 60 5 110325487 110325505 GAAGCGATACTCCTGTACC 57 110325445 110325463 GAGGTGGTGAGACTTTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mak ENSRNOG00000015101 ENSRNOT00000020672 3 1 1 80 17 21547977 21552732 CATACCAACGAATCCAGTCAG 59 21552772 21552792 TCTCCAGACTTGAAGACTGTC 59 NA Rattus norvegicus 81 Olr1536 ENSRNOG00000053715 ENSRNOT00000081508 1 1 1 60 11 45687779 45687800 CTCTTCTCTTCATGTATCTGCT 58 45687740 45687759 TCCATCATGTCTTCATCCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Drc7 ENSRNOG00000025860 ENSRNOT00000031064 1 1 1 80 19 10379411 10379736 GATCACTCGGTTATATGCCAG 59 10379351 10379371 TTCCTCCTTCAATGAGTTGGT 59 NA Rattus norvegicus 81 Slc30a9 ENSRNOG00000002246 ENSRNOT00000065550 3 1 1 80 14 42474751 42475143 TAAGTATGTCATGGAGAGTCGT 59 42474692 42474711 ATCATCACTCCTAGGACAGC 59 NA Rattus norvegicus 81 Tspan13 ENSRNOG00000005046 ENSRNOT00000006752 1 1 1 80 6 55506799 55524202 TGCTATACACCCTGGTCAG 59 55506737 55506755 CTCGGAGACTGGAGATCAG 59 NA Rattus norvegicus 81 Slc6a11 ENSRNOG00000005697 ENSRNOT00000008342 2 1 1 80 4 146220467 146221267 TGGGTGTATGGAAGTAACAGG 60 146221309 146221327 GCACCACTTGATGAGTGAC 59 NA Rattus norvegicus 81 Pik3c2a ENSRNOG00000020479 ENSRNOT00000055120 2 1 1 80 1 185318780 185318800 GATGAGTTTCAGGAACTGCAC 60 185318839 185320226 AACCATCCTATTAGGAAAGCCA 59 NA Rattus norvegicus 81 Syngr3 ENSRNOG00000012620 ENSRNOT00000017833 2 1 1 62 10 14051943 14052736 TTGCCACAGATCAGCTAGG 60 14051899 14051919 ATCAGTTCCCTAGGGAATGTC 59 NA DesignNoJunction Rattus norvegicus 81 Efcab14 ENSRNOG00000010091 ENSRNOT00000013471 1 1 1 80 5 134613814 134613834 TGTAGAGGCAATACAGAAGAC 57 134613876 134615713 CTTCCATTGGTCTCCACAC 58 NA Rattus norvegicus 81 Efcab14 ENSRNOG00000010091 ENSRNOT00000013471 2 1 1 80 5 134616862 134616883 CGACCTGATAGAAAGTGATGTG 59 134616922 134618782 CTATTACCCATCATGCTGGAG 58 NA Rattus norvegicus 81 Lcorl ENSRNOG00000003787 ENSRNOT00000072746 3 1 1 89 14 69818194 69819140 CAGTCAGTGATTGTATGCCA 58 69819191 69819210 TCTTATCAGTGTGGGACTGG 59 NA Rattus norvegicus 81 Prcp ENSRNOG00000010630 ENSRNOT00000014271 3 1 1 80 1 157732916 157736535 ACTCCTTCAAGGATTCCCA 58 157736579 157736597 AGTGCCTGATTAACTCTGC 58 NA Rattus norvegicus 81 Rgs6 ENSRNOG00000008082 ENSRNOT00000086136,ENSRNOT00000058181 2 2 2 80 6 106539142 106548952 ATAGAGATGAGCAAAGAGCCC 60 106548992 106549012 CACCTGGTCCTTCAGTATCTC 60 NA Rattus norvegicus 81 Toe1 ENSRNOG00000017561 ENSRNOT00000066869,ENSRNOT00000087237 2 2 2 80 5 135661784 135661918 CAGCAACCAGATAAGGGTG 58 135661722 135661743 TATAACATACTCCTCCATGCAC 58 NA Rattus norvegicus 81 Noxo1 ENSRNOG00000025117 ENSRNOT00000029652 3 1 1 86 10 14064886 14065185 TTTAGGCAGCTCCAGAAGAC 60 14065234 14065252 AAGCTTGGGAAGAACTCGT 59 NA Rattus norvegicus 81 Rps2-ps6 ENSRNOG00000022934 ENSRNOT00000007876 2 1 2 128 9 17212320 17212343 GCATCTCTAAAGGATGAAGTTCTG 60 17212214 17212235 ACTTAACACCAAACCAACGTG 60 NA Rattus norvegicus 81 Otop1 ENSRNOG00000028423 ENSRNOT00000050367 1 1 1 80 14 77241183 77244588 AACACTGGAAAGGTTTGGG 58 77241121 77241139 TTTGACTCATTCAGGACGC 58 NA Rattus norvegicus 81 Tmem140 ENSRNOG00000026965 ENSRNOT00000029845 2 1 1 60 4 62391069 62391088 GCCTTACTCATCATCTTGCT 58 62391110 62391129 TGTCCTTCTTATCTCGTGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem88 ENSRNOG00000009870 ENSRNOT00000013439 2 1 1 103 10 56000075 56000093 CAATCTCCTCTTGTTGGCG 59 55999861 56000008 CCTGAGAACGCAGAAACTG 59 NA Rattus norvegicus 81 Osbpl8 ENSRNOG00000026962 ENSRNOT00000091910 3 1 2 137 7 54012507 54012525 AAGTGAAACATCGCACTCC 59 54022612 54024193 CAGATTGAGCTTCACTTCCAG 59 NA Rattus norvegicus 81 Lrrc73 ENSRNOG00000039856 ENSRNOT00000061185 3 1 1 82 9 17113104 17113122 GCATGTTGGGTGATGAAGC 60 17112720 17113059 TGTTAGCTCCTTCAGACCAG 59 NA Rattus norvegicus 81 Tmem181 ENSRNOG00000018158 ENSRNOT00000068457 2 1 1 80 1 47201340 47201358 CCCAGCTGAAAGACAATCC 59 47201400 47202159 TTTCTTCATAGTCACTCCCGT 59 NA Rattus norvegicus 81 Tmem181 ENSRNOG00000018158 ENSRNOT00000068457 3 1 1 80 1 47201341 47201359 CCAGCTGAAAGACAATCCT 57 47201401 47202160 ATTTCTTCATAGTCACTCCCG 58 NA Rattus norvegicus 81 Selv ENSRNOG00000051208 ENSRNOT00000076258,ENSRNOT00000087175 1 2 2 80 1 85497582 85497602 TACACTAGAGTTCTTGGCCTC 59 85499563 85499698 TAGAATGTACCGAAGGCCA 58 NA Rattus norvegicus 81 Pcdhb22 ENSRNOG00000020028 ENSRNOT00000027133 2 1 1 60 18 30593216 30593234 AGAGACTAGCCCTGTTGAC 58 30593257 30593276 TCCCACATCCAAATCCTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Elof1 ENSRNOG00000014284 ENSRNOT00000019140 3 1 1 105 8 23127091 23127111 CACGAGAAGTCTTGTGATGTG 59 23126583 23126873 CTGACAGGTATGTGATGGGT 59 NA Rattus norvegicus 81 Mpp2 ENSRNOG00000059683 ENSRNOT00000092150 3 1 1 83 10 90022804 90027321 CTGAGTCTGCTATGCAGCA 60 90022739 90022758 GGAAGATCAGGTCCAGTTCC 60 NA Rattus norvegicus 81 Plk4 ENSRNOG00000011654 ENSRNOT00000086653,ENSRNOT00000016946 1 2 2 80 2 127703730 127704961 GGTCAGACAACTAGGTATGGA 59 127705000 127705021 AAGGATGGAAGAAAGACATTGC 59 NA Rattus norvegicus 81 Rn60_1_1361.3 ENSRNOG00000012384 ENSRNOT00000016597 1 1 1 60 1 135042500 135042518 CAAAGGCAGTTTCCCACTC 59 135042458 135042476 TGATGAATACAGCCCACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cacna1b ENSRNOG00000004560 ENSRNOT00000048945,ENSRNOT00000006162 2 2 2 80 3 1809966 1813415 GGTCATAAAGATGATAGACTTGGG 59 1809909 1809929 ATGAAGTCCAGAATGTTCCAC 58 NA Rattus norvegicus 81 Foxred2 ENSRNOG00000005749 ENSRNOT00000007598 2 1 1 80 7 119173029 119175516 TTTATGCAGAGTCCTGTTTCC 58 119172969 119172988 GCATTCTTAGGTATCCCTGC 58 NA Rattus norvegicus 81 Xpo5 ENSRNOG00000019085 ENSRNOT00000025921 3 1 1 80 9 17131470 17132375 CTATGCTTCGTGTCTTCGTG 59 17131409 17131429 CAAGGATGGGAGATATCAGGG 60 NA Rattus norvegicus 81 RGD1566053 ENSRNOG00000013378 ENSRNOT00000017909 2 1 1 80 4 65684588 65686905 TATCTGCACTTCAAGTGCC 58 65684526 65684545 TAGATGGTGTTGAAGTTCGC 58 NA Rattus norvegicus 81 Vangl1 ENSRNOG00000016477 ENSRNOT00000022182 2 1 1 80 2 204602617 204607572 CAGAGGAAGTTCAGGATGAC 58 204602556 204602575 CCTCTTGGGATATACTGTGC 58 NA Rattus norvegicus 81 AC110981.1 ENSRNOG00000026991 ENSRNOT00000037432 3 1 1 60 11 70687563 70687584 ATGTTCCAGTATGACTCTACCC 59 70687605 70687623 TCCCATTCTCAGCCTTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajc8 ENSRNOG00000013255 ENSRNOT00000089852,ENSRNOT00000017740 3 2 2 80 5 150741400 150743006 AACTTTGAGGAAAGTCGGG 58 150743050 150743068 CTTCTTCTCCTTCTTGCCC 58 NA Rattus norvegicus 81 Ddx55 ENSRNOG00000001043 ENSRNOT00000001387 3 1 1 80 12 37464077 37464096 TGAAGAGCTTGGATGTCCTG 60 37462983 37464036 GGATTGTGTTTATGCTTGCCT 60 NA Rattus norvegicus 81 AABR07065699.1 ENSRNOG00000050102 ENSRNOT00000072633 1 1 1 72 6 139560046 139560172 AAAGGTGTCCAGTGTGAGG 60 139560208 139560226 GTTTCATGGACCTTCCAGG 58 NA DesignNoJunction Rattus norvegicus 81 Pdxp ENSRNOG00000009570 ENSRNOT00000073905 1 1 2 60 7 120144799 120144817 ATTGCAGACTTGATGGAGG 58 120144843 120144861 CTACGGGATCAGGGAACTG 59 NA DesignNoJunction Rattus norvegicus 81 Cyp26b1 ENSRNOG00000015076 ENSRNOT00000020505 3 1 1 85 4 116265451 116265470 TCATCAAGGAGGTCATGAGG 59 116265035 116265403 CTGGAAACCATCCAGTTCG 59 NA Rattus norvegicus 81 Vom2r33 ENSRNOG00000047703 ENSRNOT00000073461 2 1 1 80 1 65951878 65951897 CTGTGTCCACAGTACTCGA 59 65951941 65951959 CAATGGTTCCTCAAAGGCC 59 NA Rattus norvegicus 81 AC096201.1 ENSRNOG00000052304 ENSRNOT00000091812 2 1 1 64 1 67138578 67138598 GGAACTGGAAAGTATCATCCT 57 67141476 67141497 GTTGTCGATATGATGAAAGAGG 57 NA DesignNoJunction Rattus norvegicus 81 Wdr54 ENSRNOG00000009324 ENSRNOT00000013128 3 1 1 89 4 113986910 113987023 GATGCTTCTTCAGTACAGGC 59 113986542 113986560 CAGTATCCGACCAGACCAC 60 NA Rattus norvegicus 81 Klra2 ENSRNOG00000031515 ENSRNOT00000082207,ENSRNOT00000035522 1 2 2 80 4 165427475 165427494 AACCTGTGGCTGTATATGTG 58 165427334 165427432 TCAAGCTGCTTTCTTTGGT 58 NA Rattus norvegicus 81 Crmp1 ENSRNOG00000004781 ENSRNOT00000065334 1 1 1 80 14 78270026 78270044 TCCTCGCCTTCTAAACACC 59 78267925 78269982 ATCTATCTGGGCACCTGAC 59 NA Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000038946,ENSRNOT00000044092,ENSRNOT00000066528,ENSRNOT00000045553,ENSRNOT00000046744,ENSRNOT00000055742 2 6 6 80 7 132140133 132140896 CAGAACCAGAGATGATGCAG 59 132140072 132140090 AGCTCTGCACATTCATCTG 58 NA Rattus norvegicus 81 RT1-A1 ENSRNOG00000038999 ENSRNOT00000041590,ENSRNOT00000089306,ENSRNOT00000080900 2 3 5 158 20 5416724 5416836 CACTTTCCCAGAGATGGGA 59 5416957 5417153 CTTTCCCACCTGTGTTTCTC 59 NA Rattus norvegicus 81 Nup85 ENSRNOG00000003673 ENSRNOT00000005035 2 1 1 80 10 104134441 104134459 TCCTCTCAACACAGAGCAG 59 104134501 104135028 ATGCTTCCAACTTGTTCAGTC 59 NA Rattus norvegicus 81 Slc34a2 ENSRNOG00000004626 ENSRNOT00000048509 2 1 1 80 14 60263288 60263307 TTCCAGAATGGAGAAGATGC 58 60262479 60263247 TTTATCCAGCTGGATGATGAG 58 NA Rattus norvegicus 81 AABR07065792.2 ENSRNOG00000048696 ENSRNOT00000048010 2 1 1 75 6 141472580 141472703 AAGATGTCCAGTGTGAAGTG 58 141472524 141472542 GAGAGTTTCAGAGAAGCCC 58 NA DesignNoJunction Rattus norvegicus 81 AABR07065792.2 ENSRNOG00000048696 ENSRNOT00000048010 3 1 1 76 6 141472580 141472704 AAAGATGTCCAGTGTGAAGTG 59 141472524 141472542 GAGAGTTTCAGAGAAGCCC 58 NA DesignNoJunction Rattus norvegicus 81 Pou1f1 ENSRNOG00000000715 ENSRNOT00000000905 1 1 1 80 11 2660152 2661011 AGGACAACTATCAGTATCGCC 60 2661053 2661071 GATCTCCTGCGAAGAAGGT 59 NA Rattus norvegicus 81 Diras3 ENSRNOG00000033736 ENSRNOT00000052237 1 1 1 83 6 135939363 135939381 ATCGAAGTAAACCGGGCTC 60 135939298 135939316 GTACAGGTCCTTGAGGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069352.1 ENSRNOG00000054195 ENSRNOT00000074246 1 1 1 67 8 18095150 18095168 CTCACTTGGCAGTTGTCTG 59 18095099 18095120 GGAAACAGTAATTGAAGAGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Trmt6 ENSRNOG00000021270 ENSRNOT00000028893 1 1 1 80 3 125465562 125465583 GGAAAGTCCCAGAAACTTACTC 59 125465032 125465523 CTGCTGAACTATTTCCTCTCC 58 NA Rattus norvegicus 81 Cd207 ENSRNOG00000013222 ENSRNOT00000017691 2 1 1 81 4 115351426 115351444 ATAGTGCGGAGCAGTACTG 59 115350005 115351384 TTGTAGAGAAACTCGTGTTCTG 59 NA Rattus norvegicus 81 Rpl37 ENSRNOG00000033803 ENSRNOT00000045156 1 1 1 60 9 69791022 69791041 CTAAGAGGCGAAACACTACC 58 69791060 69791082 CTTCGGTAGACAATCTTTAGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctf1 ENSRNOG00000018962 ENSRNOT00000025646 3 1 1 90 1 199164446 199164464 CATTTGGAGGCCAAGATCC 59 199164517 199167089 GTTGCTGCACATATTCCTCC 59 NA Rattus norvegicus 81 Lnp ENSRNOG00000001593 ENSRNOT00000068018,ENSRNOT00000083045 3 2 2 80 3 61440231 61441705 CACTGAAGGAGGAACAATACC 59 61440171 61440191 TTCACTTTGAGCCAGTTAGAC 58 NA Rattus norvegicus 81 Zfp146 ENSRNOG00000006796 ENSRNOT00000008889 3 1 1 60 10 74769356 74769377 GCTTACCCATCAGAAGATTCAC 59 74769317 74769335 TTTCCCACAGTCTTTGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lnpep ENSRNOG00000047387 ENSRNOT00000017718 1 1 1 80 1 59312955 59312977 CTGACCTCATCTATAATCTCCTG 58 59306803 59312918 GCAATTTATGTACTCTGGTCAC 58 NA Rattus norvegicus 81 LOC100911044 ENSRNOG00000047616 ENSRNOT00000075013 3 1 1 81 1 62968883 62979037 ATGAGACAGATATGGATCAGTG 57 62979079 62979097 GACTTCTCTAGGCAGTGGA 58 NA Rattus norvegicus 81 RGD1306151 ENSRNOG00000008443 ENSRNOT00000068663 2 1 1 80 4 169005917 169007050 TGTTTACAGTGATGGAGTTGAG 58 169007091 169007109 CTGGTTGTAATCAGGAGGC 58 NA Rattus norvegicus 81 Ceacam10 ENSRNOG00000046222 ENSRNOT00000057384 3 1 1 166 1 83004000 83004788 GACTACTGCTCACAGCCTC 60 83004918 83004936 AGTGGTTCCCTTGTACCAG 59 NA Rattus norvegicus 81 Ddx54 ENSRNOG00000001377 ENSRNOT00000001859 3 1 1 80 12 41477764 41477886 GAACAGCTCAAGACTTCCT 57 41477702 41477720 AACGACATTCTGTAGCAGG 58 NA Rattus norvegicus 81 Ddi1 ENSRNOG00000022081 ENSRNOT00000076103,ENSRNOT00000039868 3 2 2 60 8 4548703 4548723 CATTTGATCAGGAGACACAGG 59 4548663 4548683 TCTTCAATATTCTGCTGTCGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr1 ENSRNOG00000028498 ENSRNOT00000024012 3 1 1 80 14 77004401 77004420 ATCAAGGACATAGCCTGGAC 59 77004460 77005519 GAAGACAGCTCCAAATTTCTCC 60 NA Rattus norvegicus 81 Lyc2 ENSRNOG00000034139 ENSRNOT00000064594,ENSRNOT00000085673 3 2 2 62 7 60316386 60316404 AGAAGTTCTGCACTAGCAG 57 60316430 60320003 CTGAGCCATACACATCCAG 58 NA DesignNoJunction Rattus norvegicus 81 Qsox1 ENSRNOG00000003649 ENSRNOT00000068044,ENSRNOT00000005052 2 2 2 80 13 73452299 73460603 TAACGACGTGAAAGACTGGA 59 73452238 73452256 CTGCAGACAGCACTATTGG 59 NA Rattus norvegicus 81 Sh2b3 ENSRNOG00000028198 ENSRNOT00000030583 1 1 1 128 12 40262086 40262182 TTTGTGTTGAAGGTGCAGG 59 40262349 40262367 TAACTCTGTGTCCAGGTGC 59 NA Rattus norvegicus 81 Mef2a ENSRNOG00000047756 ENSRNOT00000072915,ENSRNOT00000070864,ENSRNOT00000084946,ENSRNOT00000089723 3 4 4 84 1 128217240 128217258 GTGACAACTCCAAGCTTGC 60 128213307 128217194 CGCTGGTCAATGAGTAATCAG 59 NA Rattus norvegicus 81 Ankrd34b ENSRNOG00000040166 ENSRNOT00000061812 2 1 1 89 2 22006793 22013349 CCACATCTCAGGTATTGATTTCTG 60 22013397 22013415 TGCACTGCTTTGATCAAGG 59 NA InUTR Rattus norvegicus 81 Armc1 ENSRNOG00000013253 ENSRNOT00000018548 3 1 1 85 2 103957209 103963234 ATCCAGAAGACTACAACTCCA 58 103957144 103957162 CCATCAGCCATATTGGAGG 58 NA Rattus norvegicus 81 Enpp5 ENSRNOG00000010232 ENSRNOT00000013703 2 1 1 87 9 19472995 19473013 GAGTTCAACCGATCGTAGC 58 19470650 19472945 TAACCATGGTTGCCTAACAG 58 NA Rattus norvegicus 81 AABR07065645.2 ENSRNOG00000047785 ENSRNOT00000070980 1 1 1 116 6 138565055 138565073 AATCCCGACTGAGCATCAG 60 138564863 138564977 TCTGAAGTGATCTGTGTCTGG 60 NA Rattus norvegicus 81 Epha3 ENSRNOG00000030285 ENSRNOT00000090197,ENSRNOT00000040065 2 2 2 80 11 459036 459055 CTCTGACTTCGGACTTTCTC 58 446478 458998 CTTATTGGTATCTTTCCTCCTCTG 59 NA Rattus norvegicus 81 Rita1 ENSRNOG00000037720 ENSRNOT00000057242 3 1 1 70 12 41486400 41486418 CCCAAATCTCACACCAAGG 59 41487984 41488003 ACTCATCACAGTAGGATGGG 59 NA DesignNoJunction Rattus norvegicus 81 Insc ENSRNOG00000024712 ENSRNOT00000030540,ENSRNOT00000078096 3 2 2 80 1 184387167 184387185 ACATCTGTCTTTCACCCAG 57 184387229 184392549 TGGCACAGTTTGATTAGGG 58 NA Rattus norvegicus 81 Glp2r ENSRNOG00000003683 ENSRNOT00000004946 1 1 1 80 10 54317360 54323262 TCCATCAAGCAAGTTACAGG 58 54317299 54317317 GTCTTCCAGACACTTCTCC 57 NA Rattus norvegicus 81 Gbx2 ENSRNOG00000019495 ENSRNOT00000026419 1 1 1 152 9 97065391 97065409 AACTTCGACAAATCCGAGG 58 97064214 97064232 CTTTGACTCGTCTTTCCCT 57 NA DesignNoJunction Rattus norvegicus 81 Gbx2 ENSRNOG00000019495 ENSRNOT00000026419 3 1 1 153 9 97065391 97065409 AACTTCGACAAATCCGAGG 58 97064213 97064232 CCTTTGACTCGTCTTTCCCT 60 NA DesignNoJunction Rattus norvegicus 81 Tpr ENSRNOG00000002394 ENSRNOT00000063833 2 1 1 80 13 67646339 67646359 ACTCAGAAAGCAGAATCACAG 58 67646399 67646527 GGAAACTTCATCCTTCAACAC 58 NA Rattus norvegicus 81 Tkfc ENSRNOG00000020704 ENSRNOT00000028102 1 1 1 80 1 226647201 226647219 TGTCAGCACTAGAGATGCG 60 226646776 226647160 TTTCAGCATCTATCAGCTTCAG 59 NA Rattus norvegicus 81 Crygc ENSRNOG00000014950 ENSRNOT00000020078 2 1 1 81 9 71787960 71787978 ACTACCCTGACTACCAGCA 60 71786573 71787915 CTGTGGGAACCTGTATGGG 60 NA Rattus norvegicus 81 Tnrc6b ENSRNOG00000024907 ENSRNOT00000091270,ENSRNOT00000033975 2 2 2 80 7 122131639 122134434 ACTCCACAGATTGATGGGTC 60 122134474 122134495 GGTTAGGTTCAGATGGAATGTC 59 NA Rattus norvegicus 81 AABR07026893.1 ENSRNOG00000050796 ENSRNOT00000072930 2 1 1 81 17 3729726 3729744 GATCCCTTCCAGAAGAAGC 58 3729468 3729684 CTTCCCAATTAAAGCCTATAGC 57 NA Rattus norvegicus 81 Nip30 ENSRNOG00000017841 ENSRNOT00000024120 3 1 1 80 19 10842927 10843629 GAGGACCCAGAAGAATGTC 57 10843672 10843691 CTTCCTGTCTTTCTGTTCCT 57 NA Rattus norvegicus 81 Slit3 ENSRNOG00000007377 ENSRNOT00000009714 1 1 1 80 10 20514358 20514376 CCACATCTCAGATCGAGGG 59 20514418 20517345 CATGGATTCTCTTGCTCACAG 59 NA Rattus norvegicus 81 Fez2 ENSRNOG00000004577 ENSRNOT00000082071,ENSRNOT00000042735 2 2 2 80 6 990821 998860 AGAGAAAGGGATGAGTGATGG 59 990761 990781 ATTGAATGCATATCCAGCTGC 60 NA Rattus norvegicus 81 Ccer1 ENSRNOG00000004875 ENSRNOT00000006455 2 1 1 60 7 38947359 38947380 CAAATAATTCCCAATGTGCCAG 59 38947400 38947419 ACTAATGGCTAATGTCCGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp2r2c ENSRNOG00000058202 ENSRNOT00000091927,ENSRNOT00000088469 1 2 2 80 14 78691208 78698848 ATCGGAGCTTCAACATCGT 60 78691146 78691165 GATGGAACTCAGATGCTGTG 59 NA Rattus norvegicus 81 Tbxas1 ENSRNOG00000007918 ENSRNOT00000010796 3 1 1 80 4 66736968 66756909 TCCAACAGAATGGCCTCAG 60 66756952 66756971 TTCCTCCCATCTTCTGTCAC 59 NA Rattus norvegicus 81 Oas2 ENSRNOG00000049282 ENSRNOT00000077542,ENSRNOT00000072024,ENSRNOT00000091460 2 3 3 80 12 41354900 41355011 CTGAAGATCATCAAGGGAGG 58 41355053 41355072 GAGGAACACTACGATGTCAG 58 NA Rattus norvegicus 81 Mia2 ENSRNOG00000038832 ENSRNOT00000059335 1 1 1 80 6 80189047 80193698 GGAATGTGAAACTTTGATCACC 58 80193738 80193757 GTAGTGAAGTTCAGGTACCG 58 NA Rattus norvegicus 81 Idua ENSRNOG00000000043 ENSRNOT00000000048 2 1 1 80 14 2045662 2045974 ATACATTGGTAAGTATGGGCTG 58 2045603 2045621 TCAAAGTCATGGTGGTCTG 57 NA Rattus norvegicus 81 Cds2 ENSRNOG00000021265 ENSRNOT00000028888 2 1 1 81 3 124930204 124930222 TCTCCAAAGAAGACCTGGG 59 124930267 124931051 ACATCACGTAGGAGAGCAG 59 NA Rattus norvegicus 81 Ppp2r3b ENSRNOG00000049270 ENSRNOT00000071648 2 1 1 81 14 1472587 1472775 GATTATGTCACCACGGTGAC 59 1472817 1472837 TAATCTCCTGGCAAGAGATCC 59 NA Rattus norvegicus 81 H2afy ENSRNOG00000011523 ENSRNOT00000051702,ENSRNOT00000015632 3 2 2 83 17 9314154 9320748 GGAAGTCTAAGAAGCAGGG 57 9320795 9320813 CAGTAAAGCCGTCTGTAGG 58 NA Rattus norvegicus 81 Eef1g ENSRNOG00000020075 ENSRNOT00000027305 2 1 1 80 1 225173237 225173255 TATGCTGAGTACCGCTTCC 59 225173298 225173410 CAATCGCTGAAACATCCCAG 60 NA Rattus norvegicus 81 Rn60_8_0402.2 ENSRNOG00000051359 ENSRNOT00000077043 1 1 1 60 8 40199314 40199332 TGTCTCCCTGAAGTCTCTG 58 40199272 40199291 TTTCCACTGCTCTGTATCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pkd2 ENSRNOG00000002146 ENSRNOT00000002916 2 1 1 80 14 6604821 6608153 AGTTCCAAGTACTGGTGAGAC 60 6604761 6604781 CAATCACAGCATCGATCTTGG 60 NA Rattus norvegicus 81 Ly49i4 ENSRNOG00000051600 ENSRNOT00000078690 1 1 5 80 4 164896380 164896400 AACAGAGAACAGAAGAGATGG 58 164893906 164896339 CATTTCAACACAACCACCTG 58 NA Rattus norvegicus 81 Prlhr ENSRNOG00000009922 ENSRNOT00000013170 3 1 1 60 1 281754861 281754879 GCTACGCAAGATGCTTCTG 59 281754819 281754838 GGTCATATTCTGGCCATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sdsl ENSRNOG00000001391 ENSRNOT00000001882 2 1 1 81 12 41644517 41644536 ATGTAAGGGCACAAGAACTG 58 41644580 41645218 TTGCCTTCCCATATCAGGG 59 NA Rattus norvegicus 81 Cntnap1 ENSRNOG00000020277 ENSRNOT00000027505 1 1 1 80 10 89095463 89095482 GTAGAGTTTCGGAAGCTTGG 59 89095523 89095802 CATATTAGGGCTGCATCTGTC 59 NA Rattus norvegicus 81 Pgm5 ENSRNOG00000015406 ENSRNOT00000020763 2 1 1 80 1 242720299 242725029 TTCAAACCATTCAGAGTGGA 57 242720238 242720259 GGCGTTAAAGTCAAAGATAGTC 58 NA Rattus norvegicus 81 LOC100359479 ENSRNOG00000043383 ENSRNOT00000014965 1 1 1 80 8 55490092 55490749 AAGTCCTTGTGAGCGAGAG 59 55489744 55489765 GGGCTTTAGCAAAGAGAATCTC 60 NA Rattus norvegicus 81 Ikbkg ENSRNOG00000060936 ENSRNOT00000078438 1 1 1 83 X 156260949 156264077 ATTAAGAGCAGCAAGGGCA 60 156260884 156260902 TTCCTGTTTGGCTACCAGG 60 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000048782,ENSRNOT00000075234,ENSRNOT00000075317 2 3 6 81 12 41306150 41307122 CTAAGGTTGTGAAGGGTGG 58 41306087 41306105 TTAAGGAACACCACCAGGT 59 NA Rattus norvegicus 81 Usp25 ENSRNOG00000001573 ENSRNOT00000002150,ENSRNOT00000084928 2 2 2 80 11 15457488 15457509 ACATTTCTGAATCAGCTGAGAG 59 15457548 15461126 TCCATTACTATCCTTCAGGGC 59 NA Rattus norvegicus 81 Nkiras2 ENSRNOG00000018095 ENSRNOT00000024543 3 1 2 98 10 88537803 88538473 AACCATGTTGTGGGTTCTG 58 88538535 88538553 ATAGAAACGCACCTGTTCC 58 NA Rattus norvegicus 81 Asb7 ENSRNOG00000013795 ENSRNOT00000084082,ENSRNOT00000018436 3 2 2 83 1 127589308 127589327 GACCTTGCTCCATTTCTCTG 59 127570179 127589262 TTAACCGTGGGATCAGCTC 60 NA Rattus norvegicus 81 Eftud2 ENSRNOG00000002818 ENSRNOT00000055176 3 1 1 80 10 90949172 90949526 ATCCTAAGACGAGAAAGTTCAC 58 90949113 90949131 GAGGCTCCAAGATGAACTC 58 NA Rattus norvegicus 81 Hmgn3 ENSRNOG00000031032 ENSRNOT00000039917,ENSRNOT00000074896,ENSRNOT00000072225 3 3 3 81 8 90629319 90630522 TCTGCTAAGAAAGAACCCG 57 90629256 90629274 CTTCCTTTCCAGCTTCCTG 58 NA Rattus norvegicus 81 Pdilt ENSRNOG00000015368 ENSRNOT00000020817 1 1 1 80 1 189210136 189212213 TGTTTGTGATGTTCTATGCACC 60 189210077 189210100 GATACTTTATACCCAGCTCTTCCA 60 NA Rattus norvegicus 81 Metrnl ENSRNOG00000046202 ENSRNOT00000072190,ENSRNOT00000088495 3 2 2 80 10 110905684 110906720 GTGACTTTGTTGTCCGAGG 59 110906764 110906782 TCACCCGTAGGTGAATGAC 59 NA Rattus norvegicus 81 Gfra4 ENSRNOG00000021241 ENSRNOT00000047947 1 1 1 137 3 123580204 123580222 ACTACCTGGACAACGTGAG 59 123579344 123579362 CAAAGGCTTGTATGGCACC 60 NA DesignNoJunction Rattus norvegicus 81 Kif5a ENSRNOG00000005299 ENSRNOT00000007721,ENSRNOT00000080594 1 2 2 80 7 70527907 70529226 AGATTAAGCTGCCTGTGGA 59 70527845 70527866 ACTTGATCTTGCTGATGTAGAG 58 NA Rattus norvegicus 81 Adam11 ENSRNOG00000002753 ENSRNOT00000064429 3 1 1 80 10 90742448 90742565 GAGGTGTAAACGAGTATGGC 59 90742608 90742626 ACATCATGCCCAAGTTCTG 58 NA Rattus norvegicus 81 LOC100910735 ENSRNOG00000037744 ENSRNOT00000043279 3 1 1 81 12 42345131 42349221 GATGTCCTAGGTCATGTAAGCA 60 42349263 42349281 CCAGGTACATGCACTTCCT 59 NA Rattus norvegicus 81 Hbb-b1 ENSRNOG00000047098 ENSRNOT00000087661,ENSRNOT00000019913 1 2 3 80 1 168945647 168945666 CTACTGTTAATGGCCTGTGG 58 168945707 168945846 GGTAGACAATAAGCAGACTGG 58 NA Rattus norvegicus 81 Impg1 ENSRNOG00000012479 ENSRNOT00000017048 3 1 1 80 8 87832493 87832511 CAGACCTCAAGGAGGTCAC 59 87829545 87832452 GCTCTGGTTTACTTTCCAACTC 60 NA Rattus norvegicus 81 Lamc1 ENSRNOG00000002680 ENSRNOT00000003605 3 1 1 80 13 70679912 70679934 CTATTTCTACAATCGGTCTTGGC 60 70679009 70679872 TGCTCAGCAACCTTATCCT 59 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000084571,ENSRNOT00000090638,ENSRNOT00000047472 3 3 6 80 1 41726480 41726502 CTCAAGATAAGTCTTCAGTGACG 59 41725995 41726441 TTCCTCCACTCTGTGATGAC 59 NA Rattus norvegicus 81 LOC100911479 ENSRNOG00000045886 ENSRNOT00000072282 1 1 1 60 10 44959110 44959131 TGAAGACACATCCCAATATGAG 58 44959152 44959170 TATCAGCACAAGGACAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065839.1 ENSRNOG00000050652 ENSRNOT00000073713 3 1 1 60 6 143206538 143206557 AGACAAATCCTCCAACACAG 58 143206497 143206515 TGCAGAGTCCTCAGATGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Art4 ENSRNOG00000005670 ENSRNOT00000007485 1 1 1 97 4 170838149 170838167 GAGTAAGAACTGCAGCCTC 58 170832232 170838088 TCTTGCTGGAAGCTTTCAG 58 NA Rattus norvegicus 81 Mtnr1a ENSRNOG00000028744 ENSRNOT00000039331 2 1 1 80 16 50358468 50358486 CTATCGTGGTGGACATCCT 59 50340728 50358424 TATTCCCTGCGTTCCTGAG 59 NA DesignNoJunction Rattus norvegicus 81 LOC501038 ENSRNOG00000033654 ENSRNOT00000045455 1 1 1 80 8 103350427 103351605 CATTTCCAGGTCTTGATCCTC 59 103351645 103351665 ATAAACATCCACACGATGTCC 59 NA Rattus norvegicus 81 AABR07065811.1 ENSRNOG00000042569 ENSRNOT00000064717 3 1 1 60 6 142059844 142059862 TTATGCAACCGAGTATGCG 58 142059802 142059822 GGAATCATCTCTTGAGATGGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-Db2 ENSRNOG00000030431 ENSRNOT00000042571 3 1 2 143 20 4118489 4120010 CTGTCAGAGTGGAGTGGAG 59 4120116 4124691 GAGACACTGATCCTGCTCTC 60 NA Rattus norvegicus 81 Tspan14 ENSRNOG00000010813 ENSRNOT00000014772 2 1 1 81 16 17588280 17588298 TCGAGAGCAACATCAGGTC 60 17588342 17590082 CAGCACTGATTGGCTTTCTG 60 NA Rattus norvegicus 81 Oxsr1 ENSRNOG00000013136 ENSRNOT00000018056 3 1 1 80 8 127956647 127958863 GAAGTTATGGAGCAGGTTCG 59 127956586 127956604 TGTGGCTAGTTCAATCGCT 59 NA Rattus norvegicus 81 Ntrk3 ENSRNOG00000018674 ENSRNOT00000041839,ENSRNOT00000046849,ENSRNOT00000045165,ENSRNOT00000025536 2 4 4 80 1 140141577 140142652 TCAGTCAGTGTGATCTCCC 58 140141515 140141536 AAGTGATTACAGCATTGTCTCC 59 NA Rattus norvegicus 81 Trpa1 ENSRNOG00000007354 ENSRNOT00000009874 2 1 1 80 5 3795462 3795484 CCTCCGAAATAGAAACATGATGG 60 3795523 3800270 TCGGTCAAGACCTTGATCAC 60 NA Rattus norvegicus 81 Swsap1 ENSRNOG00000012604 ENSRNOT00000064580,ENSRNOT00000090202 3 2 3 102 8 22967061 22967651 ACAGTTCGAAGATTCGATTCC 59 22967715 22967733 AGTAGAAGGGATGGGACAG 58 NA Rattus norvegicus 81 Acbd4 ENSRNOG00000003108 ENSRNOT00000004163 2 1 1 81 10 91188457 91188547 GACGTTACAAGTGGGATGC 59 91188591 91188610 TTCATCTCCGTGATGTAGGC 60 NA Rattus norvegicus 81 Csde1 ENSRNOG00000061058 ENSRNOT00000091210 3 1 1 80 2 205549382 205550106 GTGTGAAAGATCAGTTTGGC 58 205550148 205550167 CCTGAACTTCCTTCACATGG 59 NA Rattus norvegicus 81 Sell ENSRNOG00000002776 ENSRNOT00000003733 3 1 1 82 13 82370752 82370770 ATGGAGATGTCAGAGTGCT 58 82370816 82372884 GCAGGAGATCACAACACAG 59 NA Rattus norvegicus 81 LOC102546963 ENSRNOG00000042788 ENSRNOT00000066846 1 1 1 80 1 236900847 236900867 TTGGACCTAAGTCATGTGACC 60 236897267 236900805 CAGGAGGACTGACCTTGTC 59 NA Rattus norvegicus 81 Tmem255b ENSRNOG00000026336 ENSRNOT00000076516,ENSRNOT00000042465 2 2 2 85 16 81204827 81204846 CACAGTGCTGAACGTATTGG 60 81204894 81205787 GAGACAGAGGGACCATGTC 59 NA Rattus norvegicus 81 Rcan3 ENSRNOG00000018576 ENSRNOT00000025051 1 1 1 80 5 153777796 153781864 CCAAGAGCAGAAGGAGAGG 60 153777734 153777753 CGAAAGCTCTTGAACAGCTG 60 NA Rattus norvegicus 81 Rcan3 ENSRNOG00000018576 ENSRNOT00000025051 3 1 1 81 5 153777795 153781863 CAAGAGCAGAAGGAGAGGT 59 153777732 153777750 TGCGAAAGCTCTTGAACAG 59 NA Rattus norvegicus 81 Lrpap1 ENSRNOG00000009313 ENSRNOT00000012665 1 1 1 80 14 80914516 80914534 AGAAGCTGAAGGTGGAAGG 59 80914578 80917752 TGGCCAGGATGACATTGAG 60 NA Rattus norvegicus 81 Ttc9 ENSRNOG00000007254 ENSRNOT00000009513 2 1 2 86 6 105395475 105395494 TGGCCTTCTATCATCTTGGG 59 105395543 105398066 TCACATTGGTGTCTGAGGG 59 NA Rattus norvegicus 81 Slc18a2 ENSRNOG00000008890 ENSRNOT00000011983 1 1 1 81 1 280447168 280448747 TTTGCAATTGGGATGGTGG 59 280448791 280448810 TCCCATAGACAGACACATGC 60 NA Rattus norvegicus 81 Neu1 ENSRNOG00000032942 ENSRNOT00000049344,ENSRNOT00000082410,ENSRNOT00000087912 2 3 6 64 20 4614038 4614057 CACGATCACGATTTCAACCC 60 4614208 4614226 ATGATGACTGAGCCGTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Vps28 ENSRNOG00000014633 ENSRNOT00000019707 3 1 1 83 7 117686394 117686556 GGAGCGGGAGAAGTATGAC 60 117686329 117686349 TCCTTGATGTATGCCTTCTCC 60 NA Rattus norvegicus 81 Rbmxl1b ENSRNOG00000059347 ENSRNOT00000081688 3 1 1 90 4 42186957 42186975 TTCTACAGCAGTTCAAGCC 58 42186884 42186903 TCTAGAATCTGCTTCTGCCC 59 NA DesignNoJunction Rattus norvegicus 81 Ndufc1 ENSRNOG00000038218 ENSRNOT00000058190 1 1 1 80 2 140463788 140463807 TCAATGCCAAACCTAACTGG 59 140463033 140463748 GTTGGTGGATGAGATAAATCCA 58 NA Rattus norvegicus 81 LOC100125362 ENSRNOG00000025463 ENSRNOT00000028972 2 1 1 63 8 57255144 57255162 CTTCTTCTCTGCAACTGGC 59 57254054 57254075 CTTTGATCTTGTTTCCTTTCCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Enpp4 ENSRNOG00000010174 ENSRNOT00000065048 1 1 2 89 9 19452877 19454535 TTATTTCTTAGGTGACCATGGC 59 19454585 19454603 TAGCCTTTCCTGAAGGCAG 59 NA Rattus norvegicus 81 Olr896 ENSRNOG00000031510 ENSRNOT00000040141 1 1 1 60 7 5195253 5195272 TGCTAGTCAGAGGTCAAAGG 59 5195212 5195234 GATGGAGATTACGATCATATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krit1 ENSRNOG00000007937 ENSRNOT00000032505 2 1 1 80 4 27453025 27454251 CTGTTCAGAGAATCTTAGTCTTCAG 59 27452969 27452988 GCAAGTATTTCTGGCCAGTC 59 NA Rattus norvegicus 81 Olr1513 ENSRNOG00000034227 ENSRNOT00000043016 3 1 1 60 10 61033633 61033652 TGGCTAACTTCTACTGTGAC 57 61033675 61033693 AAGCGAATGTCAGAACAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pid1 ENSRNOG00000029735 ENSRNOT00000084446 2 1 2 94 9 91776726 91776744 AGTCATCTTCCATGAGCCG 60 91668213 91776668 CCAGATACGTGACCTTGCA 60 NA Rattus norvegicus 81 Hcn2 ENSRNOG00000008831 ENSRNOT00000011837 1 1 1 80 7 12856698 12858101 CAGGAGAAGTACAAGCAAGTG 59 12856638 12856657 GTAATCGTGGATCTTCTGGC 59 NA Rattus norvegicus 81 Hcn2 ENSRNOG00000008831 ENSRNOT00000011837 3 1 1 80 7 12858302 12860540 AACATGGTGAACCACTCGT 60 12858240 12858260 GTAGCCAATACAGAGCATGTG 59 NA Rattus norvegicus 81 Tnfrsf21 ENSRNOG00000011517 ENSRNOT00000015918 1 1 1 80 9 20568505 20596873 CAATGGCCACGGTATTGAC 59 20568443 20568467 CAAAGAAACTGATAGATGTCCTTCC 60 NA Rattus norvegicus 81 Tnfrsf21 ENSRNOG00000011517 ENSRNOT00000015918 2 1 1 80 9 20596907 20596926 CTGAAGAAGTCCTTGACTCC 58 20568496 20596865 CTTCAGGATGTCAATACCGT 57 NA Rattus norvegicus 81 Hddc2 ENSRNOG00000021442 ENSRNOT00000029444 2 1 1 80 1 28583632 28592995 ACTCTGGGAAGAGTATGAGAC 58 28583572 28583592 TGAAGGATCATTTCACACTGG 58 NA Rattus norvegicus 81 Cytip ENSRNOG00000004772 ENSRNOT00000006387 1 1 1 80 3 44163245 44166033 GGAAATCTGCTAACGATAGAGAC 59 44163187 44163205 TAAAGTCTGCAGCTTTGCC 59 NA Rattus norvegicus 81 Fbxl7 ENSRNOG00000024433 ENSRNOT00000031170 3 1 1 81 2 79077699 79077718 AATATCTCCAATGAGGCGGT 59 79071217 79077655 CTTTGGAGCATCCTGACAC 59 NA Rattus norvegicus 81 Pnma1 ENSRNOG00000010553 ENSRNOT00000014018 1 1 1 60 6 107632291 107632309 GACGGTGGATTACTCCCTG 60 107632249 107632267 TACTTTCCAGAGCCCTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059632.1 ENSRNOG00000033874 ENSRNOT00000047419 1 1 1 81 4 28246278 28246926 TTAACTTCTGTCGCAACCTG 59 28246216 28246234 TCCTGCTTCAATGTGACCA 59 NA Rattus norvegicus 81 Crb2 ENSRNOG00000025498 ENSRNOT00000037257 3 1 1 81 3 22050102 22050120 ATGTCTCAACGGAGGTAGC 59 22050163 22052340 ACATGTCAGTCCTGTGTATCC 60 NA Rattus norvegicus 81 Mpc2 ENSRNOG00000003150 ENSRNOT00000004206 3 1 1 80 13 83697318 83697336 TGGATTAGCTGACATGGCC 60 83697376 83698396 CAAATAAACCCTGTAGCCATCAG 60 NA Rattus norvegicus 81 Ibsp ENSRNOG00000002158 ENSRNOT00000002938 2 1 1 82 14 6802640 6803211 CTACCCAAGAAGGCTGGAG 60 6802576 6802595 TCCTCCTCTTCCTCTTCCTC 60 NA Rattus norvegicus 81 Wdr81 ENSRNOG00000003243 ENSRNOT00000004365 1 1 1 80 10 62283337 62283357 GAGACAGAGAAGAGGAAGAGG 59 62282543 62283295 TGCAGGCTGTATCAAGGAG 60 NA Rattus norvegicus 81 LOC680112 ENSRNOG00000025618 ENSRNOT00000031984 2 1 1 81 4 70977779 70978362 TCTTCTAAAGACCAGGGTGAG 59 70978405 70978423 TATCTACCACCTGCCACAG 59 NA Rattus norvegicus 81 Fam135a ENSRNOG00000013587 ENSRNOT00000018234 1 1 1 80 9 30301314 30302682 CCAACCACTAATAAGCTTCCC 59 30301254 30301272 GCTGAGTCTTTGCTCTGTG 59 NA Rattus norvegicus 81 Zscan10 ENSRNOG00000021782 ENSRNOT00000036563 1 1 1 86 10 12936376 12936542 AGCTGTGTTGGAATCCCTC 60 12937697 12937715 GGCATTCTGCTTCCAACTC 59 NA Rattus norvegicus 81 Snhg11 ENSRNOG00000036802 ENSRNOT00000055200 1 1 1 99 3 154863626 154863644 ATGACGACTCAGGTTCTGC 60 154863705 154864421 CTGTCAATTCGGGATACTTGC 60 NA Rattus norvegicus 81 LOC684238 ENSRNOG00000021704 ENSRNOT00000071201 3 1 1 80 5 58822378 58822782 GGAAGAACTCAGGACAGCA 59 58822823 58822844 CTGGCAAGGTAGATGTTTATGG 59 NA Rattus norvegicus 81 Polr3h ENSRNOG00000004471 ENSRNOT00000005943 3 1 1 80 7 123153282 123153302 GTCTGTTTGATATCACCAAGC 57 123148970 123153240 ATCGGAAATGCACTTTGGT 58 NA Rattus norvegicus 81 LOC685881 ENSRNOG00000051000 ENSRNOT00000074294 3 1 1 61 6 24563045 24563063 CCTTTCAGTGACCTGAACC 58 24563002 24563020 TTCCCAAGATGCCATTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gabpa ENSRNOG00000053205 ENSRNOT00000086946 1 1 1 80 11 24298017 24300025 ACAGAAGAAAGCATTGTGGA 58 24300066 24300086 GCCTATTGGTTCATTGATGTC 57 NA Rattus norvegicus 81 Thbs4 ENSRNOG00000012471 ENSRNOT00000083531,ENSRNOT00000065224 3 2 2 80 2 22348103 22349767 GGAAGATAGCAACAATGATGGAG 60 22348045 22348065 ACATCAATGCGATCAATGACC 60 NA Rattus norvegicus 81 Slco1c1 ENSRNOG00000009740 ENSRNOT00000013230 1 1 1 80 4 175750058 175751645 GAATCTAGACCACATAACTATCACC 59 175751681 175751701 AACCCTGCTATTAGGTAACCA 59 NA Rattus norvegicus 81 Adgrf2 ENSRNOG00000025603 ENSRNOT00000033075 2 1 1 80 9 20927837 20927858 TCATCTTCTCCTTACTCAATGC 58 20939236 20943416 CTTCTCTTATCTTTGGATCCAGG 59 NA Rattus norvegicus 81 AABR07067267.1 ENSRNOG00000011124 ENSRNOT00000014788 1 1 1 60 9 37057159 37057179 CTCGTTTCAGTGCTTCTGG 59 37057203 37057221 GTCTTGGGATAGTGCTGAG 57 NA DesignNoJunction Rattus norvegicus 81 Btg3 ENSRNOG00000001555 ENSRNOT00000002121 1 1 1 80 11 16878173 16878192 GATGAAGACACAAGCAAGGA 58 16874303 16878131 TTCTGAAATCTGGTACACGG 58 NA Rattus norvegicus 81 Olig2 ENSRNOG00000028658 ENSRNOT00000000325 1 1 1 127 11 31389748 31390496 AATCGAATTCACATTCGGAAGG 60 31390584 31390602 AAGATCATCGGGTTCTGGC 60 NA InUTR Rattus norvegicus 81 Jag1 ENSRNOG00000007443 ENSRNOT00000010638 2 1 1 80 3 130087752 130088690 TCCCTGTGAAGTGATTGAC 57 130087690 130087709 TTGGAAGAGATATACCGCAC 57 NA Rattus norvegicus 81 LOC100365588 ENSRNOG00000053283 ENSRNOT00000080171 3 1 1 145 10 87516945 87516963 AACTGCCGTGTTAGATGGT 59 87516818 87516836 TGTCCACAGTAGGATGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plekhs1 ENSRNOG00000016926 ENSRNOT00000022724 1 1 1 80 1 277284413 277284432 AAGCACAAACCACAGATGAC 59 277284475 277285215 CCGTGATGTTGTTGAGCAG 60 NA Rattus norvegicus 81 Krtap3-3l1 ENSRNOG00000049383 ENSRNOT00000045189 2 1 1 194 10 87475749 87475767 TCCTCTGACAAGTCCTGTC 58 87475573 87475591 ATAGGTGGTGAGGTTGACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phf6 ENSRNOG00000048650 ENSRNOT00000072527 3 1 1 84 X 158280684 158280702 CAACCTTAAAGGTCTGGCG 59 158280474 158280637 CCTATCTCGGTAGGAACTGC 60 NA Rattus norvegicus 81 Cyyr1 ENSRNOG00000001544 ENSRNOT00000002109 3 1 1 94 11 25073380 25078389 TTTATGCAGAGGATTGCCG 58 25073304 25073322 GTAGGCGTAGTAGGAGCAG 59 NA Rattus norvegicus 81 LOC100911713 ENSRNOG00000050660 ENSRNOT00000075612 2 1 1 99 9 20280303 20280321 AAGATGCTGCAATTCGTGC 60 20280382 20281058 CAAACTTAAGGACACCTTCCC 59 NA Rattus norvegicus 81 LOC100363408 ENSRNOG00000047988 ENSRNOT00000073652 2 1 1 88 1 198120568 198120586 CTAAGTTCGAGGGAAAGCC 58 198120893 198120911 CTCAAAGGCATGGATGTGC 60 NA DesignNoJunction Rattus norvegicus 81 Nipsnap3a ENSRNOG00000039113 ENSRNOT00000059828 3 1 1 80 5 69817376 69817394 ATGCCCATGCTAATCAAGG 58 69817436 69819881 GAACATGAACTCTGTTGAGCA 59 NA Rattus norvegicus 81 Slc7a2 ENSRNOG00000011016 ENSRNOT00000014809,ENSRNOT00000015127 2 2 2 80 16 54474583 54474603 AAAGGAAATGTGGCTAACTGG 59 54472680 54474542 TTCAGAAGGTGGTTCTCTGG 59 NA Rattus norvegicus 81 Tmem117 ENSRNOG00000006068 ENSRNOT00000008159 2 1 1 85 7 136380939 136380958 CACATGCAGTTCAAGATTCC 58 136381003 136401292 CCGTAGTTAAACCATTTACCTG 57 NA Rattus norvegicus 81 Psmb6 ENSRNOG00000019551 ENSRNOT00000026507 1 1 1 80 10 57133311 57133332 CTATGGCTATGTTGATGCTACC 59 57133373 57133504 AAAGCAAGAGCATTGGCAG 59 NA Rattus norvegicus 81 Otp ENSRNOG00000010560 ENSRNOT00000014036 1 1 1 95 2 24548156 24548174 TTCGCCAAGACTCACTACC 59 24548233 24554167 ATTCTGGAACCAGACCTGC 60 NA Rattus norvegicus 81 Syp ENSRNOG00000059720 ENSRNOT00000085907 2 1 1 91 X 15703324 15704025 CCTATGATGGACTTTCTGGCT 60 15703253 15703271 ATCTTCACATCGGACAGGC 60 NA Rattus norvegicus 81 Synj1 ENSRNOG00000002051 ENSRNOT00000052033,ENSRNOT00000002812,ENSRNOT00000065535 1 3 3 80 11 31109186 31112873 CACCACAGCTACAACAGGA 60 31107683 31107703 ATGTTGGCTCTTGTTTGACAC 60 NA Rattus norvegicus 81 Ccdc172 ENSRNOG00000017656 ENSRNOT00000036012,ENSRNOT00000091669 3 2 2 80 1 279649156 279649177 ATGGAAGAAGATATCAAGCTGG 58 279649217 279658850 TTCCATTGACTTCATCTCCC 57 NA Rattus norvegicus 81 Hnrnpl ENSRNOG00000020235 ENSRNOT00000027425,ENSRNOT00000027494,ENSRNOT00000057034 2 3 3 80 1 87004747 87005048 GATGAATGTCTGTGTCTCCA 57 87005091 87005109 TTGTAACTGCAAGATCCGT 57 NA Rattus norvegicus 81 LOC102551744 ENSRNOG00000033125 ENSRNOT00000045349 3 1 1 60 6 3375662 3375680 TTTGCCTGCAATGGTACTG 59 3375701 3375722 CCTGTAGCTGAATTACTTCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025299.1 ENSRNOG00000047664 ENSRNOT00000072321 3 1 1 80 16 32299434 32299465 TTTGGCCACATACATGAAGG 59 32299342 32299361 GTGACGTTGTAGACTCTTCG 58 NA Rattus norvegicus 81 Iqcf5 ENSRNOG00000013164 ENSRNOT00000017570 2 1 1 149 8 115213530 115213548 GTGATGGGAACATCTAGCC 58 115214501 115214519 GAATGATCCACGCGTTGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Plac8 ENSRNOG00000002217 ENSRNOT00000003012 3 1 1 105 14 10706331 10706349 TCTTGGATGTCAAGTGGCA 59 10706418 10709843 AATAGACCCAGGAATGCCG 60 NA Rattus norvegicus 81 Kcnd3 ENSRNOG00000014686 ENSRNOT00000019997 1 1 3 80 2 208133787 208134863 CACCATCAAGAACCACGAG 59 208134905 208134925 GATGGGTAGTTCTGCATTGAG 59 NA Rattus norvegicus 81 Rybp ENSRNOG00000005353 ENSRNOT00000007185 3 1 1 89 4 132740748 132740767 GTCTGCACCTTTAGGAACAG 59 132694064 132740696 ATTGATGCGAGGTTTCCTG 58 NA Rattus norvegicus 81 LOC100361655 ENSRNOG00000003266 ENSRNOT00000004356 3 1 1 80 10 91282836 91282856 TGGAATCGTAAGCTTCAAGGA 60 91282692 91282794 CCCTTCATTTGGCTCATGC 60 NA Rattus norvegicus 81 Ccl9 ENSRNOG00000028548 ENSRNOT00000029184 1 1 1 83 10 70788181 70788199 GAAGCCCTTTCATACTGCC 59 70785290 70788134 GTCTCTGTCGCATGTACGA 60 NA Rattus norvegicus 81 Nkx6-1 ENSRNOG00000002149 ENSRNOT00000002928 1 1 1 80 14 9558404 9558422 GTACTTGGCAGGACCAGAG 60 9558465 9560633 TTCTGGAACCAGACCTTGAC 60 NA Rattus norvegicus 81 Hnrnpf ENSRNOG00000014562 ENSRNOT00000083843 3 1 3 143 4 149957229 149970694 TCGTCTTCCTGAAGGTTGAG 60 149970800 149970818 CGGGAGGAAGGTAGAAGTG 59 NA InUTR Rattus norvegicus 81 Cyp21a1-ps ENSRNOG00000053116 ENSRNOT00000090245 1 1 1 107 20 4283218 4298980 TGCACTTTCTACAATCTTCCC 58 4283068 4283086 GTTAGAGTTCAGCACCACC 58 NA Rattus norvegicus 81 Cyp21a1-ps ENSRNOG00000053116 ENSRNOT00000090245 2 1 1 107 20 4283218 4298981 CTGCACTTTCTACAATCTTCCC 59 4283069 4283087 TTAGAGTTCAGCACCACCG 60 NA Rattus norvegicus 81 Sos1 ENSRNOG00000007106 ENSRNOT00000009359 1 1 1 80 6 3107967 3109354 CCCATCCAAGATTATGTCTAAGC 59 3107909 3107929 GGTGAATAGGCTTTCGATGTG 60 NA Rattus norvegicus 81 Tmem33 ENSRNOG00000002254 ENSRNOT00000003128 3 1 1 85 14 42541998 42551436 TGCTCTTTAGTGGTCAAGGA 59 42541932 42541955 GGGATTTCTTCTAGAGGAATATCG 59 NA Rattus norvegicus 81 Enc1 ENSRNOG00000016541 ENSRNOT00000022144 1 1 1 110 2 28054717 28054736 ATAACCACGGTTCCCTACTC 59 28054809 28058630 GTCAGAGTGAGCTCACTCG 60 NA InUTR Rattus norvegicus 81 Lpcat2 ENSRNOG00000016643 ENSRNOT00000022359 2 1 1 80 19 15507880 15516616 AAGTTGAGTTTATGCCTGTGC 60 15507820 15507838 AATTCCGGACTCTACTGGC 59 NA Rattus norvegicus 81 Trpm1 ENSRNOG00000015829 ENSRNOT00000021262 2 1 1 80 1 125058011 125060451 GAATGGAAGATGATGAGCCC 59 125060489 125060512 CCACATCTATATCAATCTCCTCCT 59 NA Rattus norvegicus 81 Bcl2l15 ENSRNOG00000037149 ENSRNOT00000056068 3 1 1 80 2 206315034 206315052 ACAAGTTCAACGGAGAGCT 59 206315096 206317639 TGAGTACAGTTCCTGCCTG 59 NA Rattus norvegicus 81 LOC100364265 ENSRNOG00000012088 ENSRNOT00000072844 2 1 1 80 5 16782501 16782519 GAGTAAGAACAAGCAGCCA 58 16781991 16782459 AGTAATAAATCTCCTGGTGGC 58 NA Rattus norvegicus 81 Wdr11 ENSRNOG00000020430 ENSRNOT00000027704 1 1 1 80 1 202806388 202808817 GCAGGAGTTAGTAGAGCCAG 60 202808857 202808878 TGTAGTAGGAAGGCTTTCAAGG 60 NA Rattus norvegicus 81 Snx20 ENSRNOG00000014202 ENSRNOT00000019130 3 1 1 81 19 19399771 19399790 CCAATGCATAACAAGGACCA 59 19399834 19401518 ATCTTGGGCTTCTTCTGGG 59 NA Rattus norvegicus 81 Timd4 ENSRNOG00000038894 ENSRNOT00000059448 3 1 1 80 10 31889968 31889988 GACCATATCTACAGACACAGC 58 31890028 31911275 TCTGAAAGGTAACGGAAAGAC 58 NA Rattus norvegicus 81 Stk33 ENSRNOG00000014590 ENSRNOT00000019597 2 1 1 80 1 173921849 173921869 AACAGCTCATGAAAGTAGACC 58 173911047 173921807 GAGTATTGCCTGTCAACCA 58 NA Rattus norvegicus 81 AABR07007675.1 ENSRNOG00000058886 ENSRNOT00000080942 2 1 1 128 2 23257962 23257982 CGAGGAAGTAAACGATATCGA 58 23258296 23258314 TAAAGCTCAGTGACTCGTG 57 NA DesignNoJunction Rattus norvegicus 81 Atg16l1 ENSRNOG00000017913 ENSRNOT00000080482,ENSRNOT00000024445 1 2 2 80 9 94903150 94904470 GATAGTGCTGGAGCTTACCT 59 94904509 94904531 CCGTAATCGATAATCATCCACAG 59 NA Rattus norvegicus 81 Sdhaf4 ENSRNOG00000028087 ENSRNOT00000035033 1 1 1 80 9 30249444 30251342 GAGCAACAAGATCATCTCTTCTG 60 30249386 30249404 CTTGCTTTGAAGGCTCAGG 59 NA Rattus norvegicus 81 Ackr3 ENSRNOG00000019622 ENSRNOT00000026558 1 1 1 60 9 97355984 97365588 AGGTCACTTGGTTGCTCTC 60 97365610 97365630 AGGTTCCACATAGTCAAACAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Kap ENSRNOG00000005858 ENSRNOT00000007806 2 1 1 99 4 167551951 167552099 GCATACAGATTTCTGAGCTCTC 59 167550151 167550169 AATGGAAACTCCACTGTGC 58 NA Rattus norvegicus 81 Rrp8 ENSRNOG00000018766 ENSRNOT00000025651 2 1 1 80 1 170575420 170575646 TCATCTACAAGGACCTGACC 59 170575359 170575377 CTTTGGGTCCTACTCGAGG 59 NA Rattus norvegicus 81 Zfp819 ENSRNOG00000030160 ENSRNOT00000077073,ENSRNOT00000024662 2 2 2 90 1 99534190 99537395 ATCAGAGGTGTGGTCAAGG 59 99537449 99537467 ATTACTCTTGATGCGTCCC 57 NA DesignNoJunction Rattus norvegicus 81 Ehmt1 ENSRNOG00000007242 ENSRNOT00000086843,ENSRNOT00000066777 3 2 2 80 3 1977124 1977142 GAGCTGATTTCAGACTCCG 58 1968550 1977082 CACCTCTCCATCCTTATTGTC 58 NA Rattus norvegicus 81 Cdc34 ENSRNOG00000060530 ENSRNOT00000088330 1 1 1 92 7 12902741 12902759 CATCTCCATCCTCCATCCC 59 12902539 12902686 AGGATGGTCCTGACATTCTG 59 NA Rattus norvegicus 81 Dhx8 ENSRNOG00000020772 ENSRNOT00000086892,ENSRNOT00000048140 1 2 2 80 10 89669853 89669871 GTGTACTCTGCTCTTCCGA 59 89669915 89671309 GGCAATCACCACCTTTCTG 59 NA Rattus norvegicus 81 Clic6 ENSRNOG00000026870 ENSRNOT00000084412,ENSRNOT00000034383 2 2 2 80 11 32690007 32697744 CACATCATTAAGATTGTGGCC 58 32697785 32697804 GTTCAAGTACCTCCAAATGC 57 NA Rattus norvegicus 81 Clic6 ENSRNOG00000026870 ENSRNOT00000084412,ENSRNOT00000034383 3 2 2 80 11 32690007 32697745 CACATCATTAAGATTGTGGCCA 59 32697784 32697804 GTTCAAGTACCTCCAAATGCC 60 NA Rattus norvegicus 81 Actr5 ENSRNOG00000023989 ENSRNOT00000032943 1 1 1 80 3 155129403 155129421 ATGTACCCAGGCATGAAGG 60 155129465 155131242 AAGCTGAACCTGGAAGGAG 59 NA Rattus norvegicus 81 Rn60_1_1361.1 ENSRNOG00000051102 ENSRNOT00000076782 3 1 2 60 1 134999674 134999694 TGGAACACATCAATCTACACC 58 134999715 134999734 CCAGGAAAGTCAAACTCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc17 ENSRNOG00000023216 ENSRNOT00000090852,ENSRNOT00000034464 3 2 2 80 5 135442343 135442484 GACTCCGGAGATTATGGCA 59 135442525 135442546 TCCTCTGTCAGTCTCTTTAGAG 59 NA Rattus norvegicus 81 Rbm5 ENSRNOG00000018153 ENSRNOT00000085364,ENSRNOT00000024529 2 2 2 80 8 116514282 116514301 GGAGGCAATGTTGACTACAG 59 116514138 116514243 CTGGTAATCCTGTGAGTATTGAG 59 NA Rattus norvegicus 81 Polr2k ENSRNOG00000010408 ENSRNOT00000013869 1 1 1 145 7 74990055 74990073 TGTTCAACCACCAAAGCAG 59 74990516 74992339 AAACCACCAATCTCTTAGTCCT 59 NA Rattus norvegicus 81 Atad1 ENSRNOG00000010861 ENSRNOT00000014684,ENSRNOT00000092063 2 2 2 80 1 251237268 251239543 CTACATCAGAAGAAAGTCATGACG 60 251237211 251237230 TCATCTTCTCAATTGCCCGA 60 NA Rattus norvegicus 81 LOC100361476 ENSRNOG00000016336 ENSRNOT00000022008 3 1 1 60 20 45445047 45445066 CACCTTTGACAAACACGGAG 60 45445006 45445026 ACGGCTTATTCCAAATCTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp341 ENSRNOG00000017086 ENSRNOT00000047286 3 1 1 89 3 150148897 150148916 GCTACCAACAGCATCTACAC 59 150148967 150150275 GATGTATGTGGAGATCTGGC 58 NA Rattus norvegicus 81 LOC100909885 ENSRNOG00000049554 ENSRNOT00000072517 2 1 1 60 2 35178555 35178575 GGATTAACAAAGCAGCCTGAG 60 35178595 35178615 CATAGATGACCAGGAACAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajc28 ENSRNOG00000002026 ENSRNOT00000002771 2 1 1 87 11 31771354 31772781 TCCGGTCTGTGAAGATCAC 59 31771285 31771303 GTAGTCTCAGGATCCGAGC 59 NA InUTR Rattus norvegicus 81 Aipl1 ENSRNOG00000007889 ENSRNOT00000010533 1 1 1 80 10 58608825 58608845 GTGTCAAGAAGACCATTCTGC 60 58608199 58608785 GGAAATGAAAGGTCACTCTGG 59 NA Rattus norvegicus 81 Mvk ENSRNOG00000049604 ENSRNOT00000073774 2 1 1 81 12 47918397 47919332 CTGTGGTCCAGTAGCTCTG 60 47918334 47918352 GCTCACTTTCCCATTGCTC 59 NA Rattus norvegicus 81 Zfp133 ENSRNOG00000027955 ENSRNOT00000031623 1 1 1 114 3 138597816 138609108 TGCTGGAAGGTACACATGG 60 138609184 138609204 AGTTCTCCAACATCACCTCTC 60 NA Rattus norvegicus 81 Krt23 ENSRNOG00000011907 ENSRNOT00000016657 3 1 1 80 10 87397217 87397238 AAGTGATATCCATGAGCTGAGG 60 87394533 87397177 AAAGCGGATTTCCTGTTGTG 60 NA Rattus norvegicus 81 Andpro ENSRNOG00000031840 ENSRNOT00000049635 1 1 1 80 3 143895535 143896323 TTCTATAACCTAAAGCGGACTCC 60 143895477 143895495 TAGGAGCTTCCTGCATCTG 59 NA Rattus norvegicus 81 Olr214 ENSRNOG00000048643 ENSRNOT00000067201 2 1 1 60 2 4859123 4859143 CTCACTTCAGTTATCACTCCC 58 4859162 4859183 ATATGGTGTTGTCTTTGAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055492.1 ENSRNOG00000056878 ENSRNOT00000077369 3 1 1 84 7 4127105 4127124 TAAAGCCATCAACACCAAGG 59 4127039 4127057 GAGCTAGGTCCTTTGGGTG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07011744.1 ENSRNOG00000061747 ENSRNOT00000089063 3 1 1 132 2 167878151 167892233 TTCCCTTTGACAACAGAGGA 59 167878038 167878056 AGTTTCTCCTCAGAGCTGG 59 NA Rattus norvegicus 81 Rmt1 ENSRNOG00000013373 ENSRNOT00000017860 3 1 1 87 1 218374046 218374064 CCATACACTGCAAAGTGGG 59 218373849 218373995 AGAGCCTTTCTGTGTCCAC 60 NA InUTR Rattus norvegicus 81 Cacna2d4 ENSRNOG00000008031 ENSRNOT00000010746 2 1 1 80 4 151304539 151305616 ATGTGTACAACAAAGACCCA 57 151305657 151305677 GAAAGTTCTCCACAAACACAG 58 NA Rattus norvegicus 81 Rev1 ENSRNOG00000018623 ENSRNOT00000067197 2 1 1 80 9 44760168 44760186 GCTAAGCAGAAGGATGGGA 59 44754717 44760127 AGCAGAAGGATCTGTATATCCA 58 NA Rattus norvegicus 81 Foxl1 ENSRNOG00000047125 ENSRNOT00000074430 1 1 1 60 19 53055914 53055933 TTATAGCCATGGCGATCCAG 60 53055956 53055974 TGGTAGATGCCGTTCAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055673.1 ENSRNOG00000048102 ENSRNOT00000075705 1 1 1 80 7 7675455 7675480 AGATACGAAGATCCTACTGATGG 59 7675517 7675538 TAGGACAGAATTACCAAAGCCA 60 NA Rattus norvegicus 81 Slc38a3 ENSRNOG00000016827 ENSRNOT00000023623 1 1 1 80 8 116413484 116414044 TCATCCTCTTCCTGTTCCTG 59 116413423 116413441 TCCCAGAAGACTTGAGGAG 58 NA Rattus norvegicus 81 Lhx4 ENSRNOG00000003595 ENSRNOT00000067253 1 1 1 80 13 73354002 73356920 CCAAGCAGAACGATGACTC 59 73353939 73353959 CATTCTTTAGTGTCTCCAGCT 58 NA Rattus norvegicus 81 Arhgap30 ENSRNOG00000004192 ENSRNOT00000005619 2 1 1 80 13 89789481 89789500 CTCATTTAGTGCCCAAACCA 59 89789542 89790719 ATGTCCTTAGACCTCAGCAG 59 NA Rattus norvegicus 81 RGD1561281 ENSRNOG00000061130 ENSRNOT00000089610 1 1 1 136 10 87541762 87541780 GATCCTTCTCCTCCCAGAG 58 87541644 87541662 GATGGGCCTAGTGTAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppox ENSRNOG00000003567 ENSRNOT00000004896 1 1 1 80 13 89651008 89651026 GTACCATCCAAGCTGTGTC 58 89650868 89650964 GATGTCCAAATCCCTGCAC 59 NA Rattus norvegicus 81 Krt42 ENSRNOG00000034087 ENSRNOT00000046956 2 1 1 82 10 88170174 88170192 CCACAATCGACAATGCCAG 60 88170003 88170128 TGTCTCATACTTGGTGCGG 60 NA Rattus norvegicus 81 Tmeff1 ENSRNOG00000008034 ENSRNOT00000065775 1 1 1 80 5 64346746 64346767 AATCATCGTGTAAGTATGGAGG 58 64346807 64352386 TTGTATGGCACTGAAACTGG 59 NA Rattus norvegicus 81 Layn ENSRNOG00000011228 ENSRNOT00000088607,ENSRNOT00000040162 2 2 2 80 8 55464564 55464582 AAACAGCACAACAGCACAG 60 55458429 55464524 CATATACCAGTTCCTGAACTGTG 59 NA Rattus norvegicus 81 Dlx2 ENSRNOG00000001519 ENSRNOT00000002076 1 1 1 124 3 58181653 58181671 AACAACGTCTCCTACTCCG 59 58181143 58181565 TCAAGGTCTTCCTTGTCGG 59 NA Rattus norvegicus 81 Dlx2 ENSRNOG00000001519 ENSRNOT00000002076 2 1 1 126 3 58181654 58181673 TCAACAACGTCTCCTACTCC 59 58181143 58181565 TCAAGGTCTTCCTTGTCGG 59 NA Rattus norvegicus 81 Leng1 ENSRNOG00000061893 ENSRNOT00000091742 3 1 1 207 1 64129204 64129222 CAAACTCAACCTCCCTGGT 60 64129393 64130588 TTTCTAGGGAAGGTGGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Fhl1 ENSRNOG00000000875 ENSRNOT00000084594,ENSRNOT00000043820,ENSRNOT00000001169,ENSRNOT00000083502,ENSRNOT00000087274 3 5 5 81 X 159167283 159167301 TGCTTTGACAAGTTCTGCG 59 159167343 159168350 TCTTATAGTGCACCTCCTTAGC 60 NA Rattus norvegicus 81 LOC684683 ENSRNOG00000049901 ENSRNOT00000071299 2 1 1 83 3 73328370 73328388 CCCACCACTCATTAAGCTG 58 73328432 73328492 CTGGAAAGATTTAAGCTTGCTG 58 NA Rattus norvegicus 81 AABR07067419.1 ENSRNOG00000050591 ENSRNOT00000072642 1 1 1 80 9 44502102 44503899 GATGAATTGTGGGATCCACG 59 44502041 44502060 TTGATGAGGATCCGGTAAGG 59 NA Rattus norvegicus 81 Actc1 ENSRNOG00000008536 ENSRNOT00000011773 2 1 1 80 3 105508385 105509268 CTTTCATTGGTATGGAGTCTGC 60 105508326 105508346 CTTTGCGGATATCGATGTCAC 60 NA Rattus norvegicus 81 Atp1a2 ENSRNOG00000007290 ENSRNOT00000058143 3 1 1 80 13 90669463 90669483 CTTCTCCTACTACCAGGAAGC 59 90669191 90669421 ATGACCAGAGCTTGCTGAG 60 NA Rattus norvegicus 81 Rnf13 ENSRNOG00000029209 ENSRNOT00000068606 3 1 1 92 2 148037240 148037258 GAGATGAGTACGACGTGTG 58 148037314 148037796 TGCAATGATAAGCATGGGA 57 NA Rattus norvegicus 81 Kif1c ENSRNOG00000031364 ENSRNOT00000041493 1 1 1 80 10 57324637 57324655 CTTTAATGCCCGTGAGACC 59 57324697 57325107 TTGGGATTAATGATGGAGGTG 58 NA Rattus norvegicus 81 Nuak1 ENSRNOG00000008061 ENSRNOT00000010636 2 1 1 89 7 25039653 25039671 CTATGAGCTGCAAGAGACC 58 25039724 25075303 TTTATAGCAACCACTCGGC 58 NA Rattus norvegicus 81 Eef2kmt ENSRNOG00000002876 ENSRNOT00000003843 1 1 1 82 10 10536589 10536890 CTATTTGCTGCCTTCAGGAG 59 10536935 10536953 ATGTAACCAAGCCTGTGGT 59 NA Rattus norvegicus 81 Ces1a ENSRNOG00000039725 ENSRNOT00000060929 1 1 1 80 19 15353597 15353615 ACTCTTGGCTACAACCCTG 59 15355176 15358909 GTCAGGAAAGGGTAGCTCTC 60 NA Rattus norvegicus 81 Mtdh ENSRNOG00000006870 ENSRNOT00000009989 1 1 1 80 7 72809708 72809729 CTTCTGATTATCAGTGGGATGG 58 72809767 72817260 CAGAAGACAAACCATTTAACCC 58 NA Rattus norvegicus 81 Ptcd2 ENSRNOG00000028403 ENSRNOT00000034992 2 1 1 80 2 29579841 29583175 GTTAGCTCTGAATCAGAACCAG 59 29579782 29579802 GTACACGTTATGCTTTCTGGA 59 NA Rattus norvegicus 81 AABR07012775.1 ENSRNOG00000053044 ENSRNOT00000054860 2 1 1 60 2 208225836 208225860 GTACTCAGTATATGTTCTGTAGACC 58 208225800 208225821 TATGTGACCAAAGGAACAACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd164 ENSRNOG00000000304 ENSRNOT00000000334 1 1 1 80 20 46253233 46254470 TGCCATGAAGCAAATAAGACC 59 46254511 46254530 AGAACAGGAGTCAGTACTGG 59 NA Rattus norvegicus 81 Olr1228 ENSRNOG00000049796 ENSRNOT00000074250 3 1 1 60 8 41366850 41366870 TCCTCTCATTTACAGCCTCAG 59 41366889 41366910 CTTTAAGGTTCTCTTCACAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r8 ENSRNOG00000059550 ENSRNOT00000089155 1 1 1 80 5 151020918 151026827 GAGACAAGCTAATTGAGAAGCTG 60 151020860 151020878 TAAAGTCGCACAGATCGGG 60 NA Rattus norvegicus 81 Fxyd2 ENSRNOG00000016469 ENSRNOT00000064611,ENSRNOT00000022074 1 2 2 80 8 49715460 49715767 TCGAGTATGACTATGAAACCGT 59 49715808 49715826 GGAGAATGAGGAGTCCCAC 59 NA Rattus norvegicus 81 Zfp444 ENSRNOG00000015517 ENSRNOT00000090327,ENSRNOT00000020787 3 2 2 70 1 71384670 71384688 TCGGGATATGACAGAAGGC 59 71383505 71384637 CGGTTCCTAAGGGAATTACC 58 NA DesignNoJunction Rattus norvegicus 81 Acap1 ENSRNOG00000015674 ENSRNOT00000021357 2 1 1 80 10 56501227 56501246 CGAGCATTAGATTATGCCCT 58 56500914 56501044 CAAACGCAGTATGAACTCCA 59 NA Rattus norvegicus 81 LOC102551901 ENSRNOG00000045554 ENSRNOT00000072309 1 1 1 80 7 139050714 139050732 CTTGGAACCTGATTCTGCT 57 139049634 139050151 TGGTGTTGTAGTAACTGGAC 57 NA Rattus norvegicus 81 Wfdc10 ENSRNOG00000026067 ENSRNOT00000036020 3 1 1 89 3 161121831 161122738 GATATGAAGTCCAAAGTCGCTC 59 161122788 161122806 CTTGGTCCGATTCACAGTG 59 NA Rattus norvegicus 81 Krt13 ENSRNOG00000014070 ENSRNOT00000018851 3 1 1 80 10 88032194 88032511 AACACTGGAGGAAATAGCAC 58 88032133 88032151 ATACTTTCGGAAATCCGGG 57 NA Rattus norvegicus 81 Plekhg1 ENSRNOG00000016011 ENSRNOT00000021471 2 1 1 80 1 40503556 40505791 GTGTTGAAGACCAGTGAAACC 60 40510168 40510186 TACGGCAGAAGTTAGCTGG 60 NA Rattus norvegicus 81 Glb1 ENSRNOG00000010196 ENSRNOT00000013632 3 1 1 81 8 122486884 122486903 TAAAGAAGTCCCAGAAGGCC 60 122486945 122490261 CGTCTTGAACTTTCTCAGAGC 59 NA Rattus norvegicus 81 Ccdc160 ENSRNOG00000046484 ENSRNOT00000071222 3 1 1 60 X 140176260 140176278 AAGAAATGGACCGAAGCGA 60 140176301 140176320 CCAGCTCTTCATTCAGAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560171 ENSRNOG00000043487 ENSRNOT00000064172 3 1 1 60 X 143682265 143682284 CAAGATGGAGGTATTGCCAG 59 143682224 143682244 TCTGATCATCTTCAAGGAAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hykk ENSRNOG00000013419 ENSRNOT00000018003 1 1 1 80 8 59511150 59511168 CTGGATTTCCAACAGCCTC 59 59511210 59511747 TTTCAGATCCACTGTCAATGG 58 NA Rattus norvegicus 81 Srebf2 ENSRNOG00000007400 ENSRNOT00000082603,ENSRNOT00000056041 2 2 2 80 7 123381301 123401450 ACATCGACGAGATGCTACAG 60 123401491 123401511 AGGAGCTACATAGTTGCTCTG 59 NA Rattus norvegicus 81 Mapk6 ENSRNOG00000009381 ENSRNOT00000013053,ENSRNOT00000080797 1 2 2 80 8 82339041 82339059 ACTTGGTGCTGAAGATTGG 58 82337333 82339001 CTTCAGAAAGATGACCCTTATGG 59 NA Rattus norvegicus 81 Krt34 ENSRNOG00000051302 ENSRNOT00000076582 2 1 3 60 10 87950086 87950104 CAAGTCTCCATTTCCTGCC 59 87950044 87950063 GTTGTCTCCTTGCATTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052807.1 ENSRNOG00000047074 ENSRNOT00000007835 2 1 1 82 3 76314628 76314648 CTTTCATGGGATCATTCTCCT 58 76314565 76314587 CTGTATAAAGAGCGACTTTCAC 57 NA Rattus norvegicus 81 RGD1561145 ENSRNOG00000042628 ENSRNOT00000067761 1 1 1 81 16 9042022 9043571 CTGAGATCGATTTCAAGTACGT 58 9043613 9043631 CAAATCTTCAGGGCAAGGA 58 NA Rattus norvegicus 81 Eif4g3 ENSRNOG00000014368 ENSRNOT00000067631,ENSRNOT00000090232 1 2 2 80 5 156512070 156516022 TTCCCATTTAAAGCAGAGTCC 58 156516063 156516082 GATGTCCAATAGGAACTCCC 58 NA Rattus norvegicus 81 Kcne5 ENSRNOG00000019176 ENSRNOT00000025923 2 1 1 77 X 113584201 113584222 ACGATGCTTATCTCTACATCCT 59 113584145 113584163 GAGTGTAGGCCAGGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sctr ENSRNOG00000049766 ENSRNOT00000072088 3 1 1 80 13 36082769 36083943 ACAAACCATTATAAGCGCCTG 59 36083983 36084003 GAAGGCGAAGACAATGTAGTG 59 NA Rattus norvegicus 81 Sgtb ENSRNOG00000011937 ENSRNOT00000016129 3 1 1 80 2 34196920 34199521 AAGGATGAAGGCAATAACCA 57 34199564 34199582 ATCCAGTTCTATTGCCTGC 58 NA Rattus norvegicus 81 Fam91a1 ENSRNOG00000008271 ENSRNOT00000011797 1 1 1 80 7 98328845 98329065 ATATTCCAGGGTTATGATCGGT 59 98329104 98329124 CGTGAGCACATTTGATGTAGG 60 NA Rattus norvegicus 81 Spns2 ENSRNOG00000057040 ENSRNOT00000078272 2 1 1 80 10 59018239 59022997 CCCTCAGCAGTACTTCTGG 60 59018177 59018196 GGTGCTATGGTGGAATAGCT 60 NA Rattus norvegicus 81 Clcn4 ENSRNOG00000003533 ENSRNOT00000059270 1 1 1 80 X 25051562 25057965 TCTGGCATACCTGAGATAAAGAC 60 25058000 25058023 CTTGATTAGAAGAGTCCATTTCCC 59 NA Rattus norvegicus 81 Clcn4 ENSRNOG00000003533 ENSRNOT00000059270 3 1 1 80 X 25043566 25043585 GGGACCTATGAAGACTTCCA 59 25043623 25045224 GCTGGTTATCTTTCTATGTCTGTC 59 NA Rattus norvegicus 81 RGD1564285 ENSRNOG00000050249 ENSRNOT00000071008 1 1 1 60 7 20069448 20069466 CCAGACACAATGTAGCCAG 58 20069406 20069426 TTCTTAGTACCGTATAGGGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trpc5os ENSRNOG00000039233 ENSRNOT00000060090 2 1 1 60 X 115721330 115721350 TATTACAGTTCATCTCGCAGG 58 115721371 115721390 TCTTCTGCTCTAGGATTCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aarsd1 ENSRNOG00000020658 ENSRNOT00000028047 3 1 1 81 10 89324466 89324485 AGTTGTTACCATCGAGGGTG 60 89324166 89324425 CTTAATGACCTGAAGGTCACTG 59 NA Rattus norvegicus 81 LOC100909882 ENSRNOG00000048892 ENSRNOT00000074742 3 1 1 60 2 46211321 46211341 TGTGGTCTTTGTTCTAGTTGG 58 46211363 46211381 GGAGACAAACGTGGTACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Brca1 ENSRNOG00000020701 ENSRNOT00000083111,ENSRNOT00000028109 1 2 2 81 10 89403466 89403486 GGAGGAAAGTGGATAGTTAGC 58 89401999 89402927 CTTCAAATTCATGCACACTCAG 59 NA Rattus norvegicus 81 Ddah2 ENSRNOG00000000842 ENSRNOT00000001118,ENSRNOT00000083353,ENSRNOT00000088251 3 3 3 120 20 5050803 5050821 CTCCTGAGGAATCACTGCC 60 5050905 5051059 CGGACTCCATCAACCTCAG 60 NA Rattus norvegicus 81 Med13l ENSRNOG00000001120 ENSRNOT00000078445,ENSRNOT00000081780,ENSRNOT00000042331 2 3 3 80 12 43465604 43465823 GTTGAAGTCATTGTCGGTGG 60 43465543 43465563 AGGAACCGGGATATCATTCTG 60 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000048130 ENSRNOT00000066305,ENSRNOT00000037662 2 2 2 80 8 118412868 118412891 GTTGTAAAGTGGAGTCCATATTCC 60 118412925 118414559 TGGATATGTCTACATTCTGAGGTC 60 NA Rattus norvegicus 81 Rpl31 ENSRNOG00000013508 ENSRNOT00000033733 3 1 1 80 9 46089219 46090073 GGAATAAGGAATGTTCCGTACC 59 46090112 46090132 GAGCTTGTTTGGTGAATCCTC 60 NA Rattus norvegicus 81 Asf1b ENSRNOG00000005115 ENSRNOT00000006964 2 1 1 80 19 25090559 25090580 TATGTCAACAATGAGTACCCAG 58 25090621 25091483 GTTCCGCTGTAACTGAGAG 58 NA Rattus norvegicus 81 Myh10 ENSRNOG00000002886 ENSRNOT00000065895 2 1 1 80 10 55352464 55352485 ATAACTTTCAGGAGACCATGGA 59 55352523 55352723 ACACGACTTTAAGCATTGAGAG 59 NA Rattus norvegicus 81 Nipa2 ENSRNOG00000012690 ENSRNOT00000018028 2 1 1 92 1 114359644 114361094 CATGAGAGCAGGTCAAGGA 59 114354311 114354329 AAATTGGCCACTTCACCAG 59 NA Rattus norvegicus 81 Arhgef4 ENSRNOG00000014035 ENSRNOT00000018935 2 1 1 80 9 41298037 41298058 AAGATCTGCAAGTATCCTCTCC 60 41298096 41298503 CTCGACATTCTTAAAGTCCCTG 59 NA Rattus norvegicus 81 Gnat2 ENSRNOG00000019296 ENSRNOT00000026237 1 1 1 80 2 210888869 210889322 AGTATGACGGCAACAATTCC 59 210889363 210889383 CATCTTTCCTCATGTTGAGGT 58 NA Rattus norvegicus 81 Arhgap1 ENSRNOG00000016610 ENSRNOT00000067318,ENSRNOT00000079118 1 2 2 80 3 80575061 80575079 CAGCAGGTTCTCCAAACTC 59 80575122 80575279 GGCAGATACCTGTACAAGGA 59 NA Rattus norvegicus 81 Rpl27 ENSRNOG00000020674 ENSRNOT00000028060 2 1 1 80 10 89356314 89356332 ATGTGTTCAGAGACCCAGC 60 89356376 89356491 TCCCTGTCTTGTATCGCTC 59 NA Rattus norvegicus 81 Strip1 ENSRNOG00000018293 ENSRNOT00000025036 2 1 1 80 2 210399478 210399667 CTGCCTCAGTATATGATTGCTC 59 210399419 210399438 GTTGATGGAGTCTGTCTTGG 58 NA Rattus norvegicus 81 Ankk1 ENSRNOG00000025037 ENSRNOT00000068040 3 1 1 80 8 53753732 53753752 GTCTTACAAGTCATCGCTGAG 59 53752289 53753134 TCTGAGTCTGCACTGTCTG 59 NA Rattus norvegicus 81 Nelfa ENSRNOG00000015474 ENSRNOT00000021593 1 1 1 80 14 82114290 82114310 CTGCTGGATATTTCTGAGCTG 59 82114348 82114807 CACTTCTGTGTCTAAAGTCTTCC 59 NA Rattus norvegicus 81 AABR07054117.1 ENSRNOG00000024844 ENSRNOT00000066588 2 1 1 82 3 141927565 141927700 AACCATAAGGATTGGCAGC 58 141927746 141927764 GATTTAGCTGAACCAGGCC 59 NA Rattus norvegicus 81 AABR07054117.1 ENSRNOG00000024844 ENSRNOT00000066588 3 1 1 82 3 141927564 141927700 GAACCATAAGGATTGGCAGC 59 141927745 141927763 ATTTAGCTGAACCAGGCCT 59 NA Rattus norvegicus 81 Pik3r1 ENSRNOG00000018903 ENSRNOT00000025687,ENSRNOT00000075057 2 2 2 80 2 31750500 31750520 TCCTTAGCTCAGTACAATCCC 59 31750222 31750460 TTTGACAACTTGATCCTGCTG 59 NA Rattus norvegicus 81 Galnt12 ENSRNOG00000008099 ENSRNOT00000011112 2 1 1 80 5 62735411 62735430 GTGCTGACATTTCTGGACTG 59 62735471 62738779 CTCCTTCTCATGGATCCTCTG 60 NA Rattus norvegicus 81 P2rx1 ENSRNOG00000017606 ENSRNOT00000024068,ENSRNOT00000088245 2 2 2 80 10 59575155 59575358 GGAAAGCCCAAGGTATTCG 59 59575400 59575420 GACACCAACCAAAGATCTCAC 59 NA Rattus norvegicus 81 Higd1a ENSRNOG00000019428 ENSRNOT00000064114 2 1 1 85 8 130484252 130484276 GAAGATGTCTATTCACTTGATCCAC 60 130483582 130484211 TGGAATAGCCCATACCAAGAG 59 NA Rattus norvegicus 81 Nkd1 ENSRNOG00000014293 ENSRNOT00000019301 2 1 1 80 19 19443852 19445637 GCTCAAGTTTGAAGAACTGC 58 19443791 19443812 AAGTCATACAGAGTGAAAGTCC 58 NA Rattus norvegicus 81 Hscb ENSRNOG00000037508 ENSRNOT00000056798 1 1 1 80 12 51881732 51882772 GACTATATCTTCTAAAGCTCCAAGG 59 51882809 51882828 TTTCCACAAGGAACTGACTG 58 NA Rattus norvegicus 81 Ube2q2 ENSRNOG00000014529 ENSRNOT00000019539 2 1 1 80 8 59740758 59743239 ATTTAAATGGTGCGGTATCTGG 59 59743279 59743298 TCTGTGATCTGTAGACGTCC 59 NA Rattus norvegicus 81 Nhlrc2 ENSRNOG00000016948 ENSRNOT00000022788 3 1 1 80 1 277356155 277356175 ATCAGTATCTGCAGAAGGTGG 60 277356213 277359700 TATTCAGCCATTCTAGTCCTTCC 60 NA Rattus norvegicus 81 Dido1 ENSRNOG00000009936 ENSRNOT00000013189 2 1 1 80 3 176175358 176175905 ATCTCAGTGAGGATTTGCCA 59 176175297 176175315 GTTTGCCAACGTAATCCCA 59 NA Rattus norvegicus 81 Rhog ENSRNOG00000020393 ENSRNOT00000076499 3 1 3 149 1 167337332 167347349 CTGAGCTGGTCACTACTTCC 60 167337202 167337223 TTGTATAGCAGATGAGAAGGCA 59 NA InUTR Rattus norvegicus 81 Fam222a ENSRNOG00000001198 ENSRNOT00000001588 3 1 1 142 12 47767028 47767046 TGACCTGTCCAAGCAAGAG 60 47749335 47749354 GAAGATCTTGATGGACAGGG 58 NA DesignNoJunction Rattus norvegicus 81 Rn60_1_1736.2 ENSRNOG00000051224 ENSRNOT00000077009 1 1 1 60 1 167355701 167355721 TTAAGTTGGACTAAGCGACCT 59 167355661 167355683 ATGATTGGTATCACTGGGTAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdcd10 ENSRNOG00000010147 ENSRNOT00000013585 1 1 1 81 2 173977841 173978955 CGTAGAAGAGTACATGATTGAACG 60 173977783 173977803 GAGAATCTGTTTAAGTGCCCG 59 NA Rattus norvegicus 81 LOC100909517 ENSRNOG00000046230 ENSRNOT00000068228 1 1 1 60 X 24629618 24629638 AGGGTCAGCATAATCAAATCC 58 24629654 24629678 CTGAGCACTTGTAACATACTATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pwwp2b ENSRNOG00000036649 ENSRNOT00000023619 2 1 1 65 1 211582228 211588438 AAAGTCTGGTCTCTTTGGC 58 211588467 211588485 ATGGCAGAGGAGTTGTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Cct6a-ps2 ENSRNOG00000027660 ENSRNOT00000031735 3 1 1 60 10 87656480 87656500 TCCTTTGATGACCTGAATCCT 59 87656519 87656540 GTGTATACTCATAGACAAGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911393 ENSRNOG00000050465 ENSRNOT00000073677 3 1 1 60 X 119532857 119532877 AGAATTCAATCACCCAGTGGA 60 119532817 119532838 CCTTCATATAAGGTTCCTGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912586 ENSRNOG00000034110 ENSRNOT00000047104 2 1 2 93 10 87753385 87753403 CTAGCTGTGGAGTGTCCAG 60 87753310 87753328 GTAGTCTGACAGCACACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Det1 ENSRNOG00000018515 ENSRNOT00000065457 2 1 1 89 1 140531986 140532004 TCTGGATGAGAACCACCTG 59 140528971 140531933 ACAAAGAAGGAGGCCTGAG 59 NA Rattus norvegicus 81 Det1 ENSRNOG00000018515 ENSRNOT00000065457 3 1 1 90 1 140531986 140532005 TTCTGGATGAGAACCACCTG 60 140528971 140531933 ACAAAGAAGGAGGCCTGAG 59 NA Rattus norvegicus 81 Trim62 ENSRNOG00000049496 ENSRNOT00000072908 1 1 1 81 5 147094527 147094803 CACAACCACTTCAGGACTC 58 147094848 147094866 TGGACACCACTACTGAAGG 59 NA Rattus norvegicus 81 Olr120 ENSRNOG00000049485 ENSRNOT00000046685 3 1 1 60 1 168802976 168802995 CTTTGACTGCTACATTGCCA 59 168802935 168802954 GTCATTGGTTAGGATGGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aoc3 ENSRNOG00000051307 ENSRNOT00000076820 1 1 1 83 10 89256079 89256097 ATACTCAGCTTTGCTGGGA 59 89256144 89256482 CACAGCCAAGTGATACCTG 58 NA Rattus norvegicus 81 Fxr1 ENSRNOG00000051480 ENSRNOT00000088442 1 1 1 80 2 120529768 120529792 GTACAAGGTTCTAGGTCTTATAGTG 58 120520591 120529733 AGAATTTGTACCATAACCGGAG 58 NA Rattus norvegicus 81 RGD1308544 ENSRNOG00000047406 ENSRNOT00000071842 1 1 1 80 1 37704122 37704145 CCAGAAATTACATCGAGATGACAG 60 37702471 37704084 ACAGTCCTTTCCTGTTCCTC 59 NA Rattus norvegicus 81 Hint2 ENSRNOG00000015866 ENSRNOT00000021387 3 1 1 80 5 59150912 59151036 ATATGAAGATCAGCAGTGCC 58 59150851 59150870 GGCTTTCTAGGAATGACCAG 58 NA Rattus norvegicus 81 Olr1766 ENSRNOG00000037506 ENSRNOT00000050717 1 1 1 60 X 136892191 136892209 AGGAACAAGGATGTGAAGG 57 136892149 136892167 TGACCAGGTATGTATGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lipt1 ENSRNOG00000018464 ENSRNOT00000024896 2 1 1 92 9 44466667 44466685 GACAAGTGCTCTAGGTCCC 60 44466741 44469368 GGAATTAGCATGCTGCCAC 60 NA InUTR Rattus norvegicus 81 Msi2 ENSRNOG00000025338 ENSRNOT00000003164 2 1 1 80 10 76039037 76039058 CCATGAGTTAGATTCCAAGACG 59 75915316 76034975 TTTGTTCTTGTGACCATCTTGG 60 NA Rattus norvegicus 81 AABR07052780.1 ENSRNOG00000046960 ENSRNOT00000070799 2 1 1 85 3 75020251 75020269 CAGTTGGCAAGTTCCTCTC 59 75020182 75020202 ACCAGATCAAGATGATCATCC 57 NA DesignNoJunction Rattus norvegicus 81 Olr141 ENSRNOG00000016946 ENSRNOT00000022733 1 1 1 60 1 169214217 169214238 CGCTATACAGCCATTCTAACTC 59 169214178 169214198 TTAGTGTAATACCCAGACCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akap1 ENSRNOG00000002373 ENSRNOT00000055683 3 1 2 81 10 76159832 76160371 ACATAGAAGGCTCTCAGCA 58 76159769 76159788 ATATTGGTGAGGTTCAGCTC 57 NA Rattus norvegicus 81 LOC100909792 ENSRNOG00000050466 ENSRNOT00000074681 2 1 1 60 2 168228102 168228122 AACATCATGCTTTCAGGTGAC 59 168228141 168228162 CAAGACTGAACTGCAATATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uqcr10 ENSRNOG00000059061 ENSRNOT00000083839 3 1 1 119 14 84937646 84937664 CAGGACTTCTACCTTCGCC 60 84935715 84937564 TGCTTTGTTGTCAGTTTCCC 59 NA Rattus norvegicus 81 RGD1562433 ENSRNOG00000036807 ENSRNOT00000055216 1 1 1 60 1 169320083 169320102 ATACTACCACCATTCCAGCC 59 169320042 169320060 GTACTGACCTCTTGTGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gstm7 ENSRNOG00000018937 ENSRNOT00000081501,ENSRNOT00000025689 1 2 3 80 2 210724756 210724775 GGACATTCTGGAGAATCAGC 59 210723669 210724714 TTCAGCTTCTCAAAGTCAGG 58 NA Rattus norvegicus 81 Olr61 ENSRNOG00000061614 ENSRNOT00000091372 3 1 1 60 1 167884395 167884414 TTTGACTATCGCTTCATCGG 58 167884354 167884375 AGGAGTGTAGGAAGAACATCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myo18b ENSRNOG00000048430 ENSRNOT00000070961 1 1 1 80 12 49840294 49840313 AGACAGAAACTGCAGAACTC 58 49840356 49847284 GTCTGCGATCTTACTCTCC 57 NA Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000001115,ENSRNOT00000082233,ENSRNOT00000080174 2 3 5 83 20 4808254 4808273 TGAAACTGAAGGACAACGAG 58 4807034 4808209 TCACAAAGATCACAACCTGG 58 NA Rattus norvegicus 81 Zic4 ENSRNOG00000014871 ENSRNOT00000019938,ENSRNOT00000056562 2 2 2 160 8 98756838 98756856 TGAAAGTTCATGGTCGCTC 58 98756980 98759152 CAAGCAACATCATTCGCTC 58 NA InUTR Rattus norvegicus 81 Olr159 ENSRNOG00000046999 ENSRNOT00000075036 1 1 1 60 1 169645854 169645875 AATACACCATACCTACTGTGAC 57 169645896 169645914 CTTGACATTGCCACAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1087 ENSRNOG00000007348 ENSRNOT00000009615 2 1 1 60 7 13997064 13997082 CATGTATCTGGTCACCGTC 58 13997103 13997124 ACAGTCTGATATGATGGCTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Inpp4a ENSRNOG00000017660 ENSRNOT00000024330 3 1 1 80 9 43962830 43962851 TCTCATCAATCAGATGACCCAG 60 43962891 43963169 CCCAGCAAGTACATTGTTCC 59 NA Rattus norvegicus 81 RGD1560585 ENSRNOG00000060534 ENSRNOT00000078404 1 1 1 60 X 144001538 144001557 AAAGAAGTATGAAGCCCTGG 58 144001497 144001516 GTTTCTCATTTCACGTTGGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam47a ENSRNOG00000003836 ENSRNOT00000005141 3 1 1 60 X 45966061 45966082 AAAGGAGTCTATGACTTCTGTG 58 45966103 45966121 GTTCGTCAATGCCCAAGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taf13 ENSRNOG00000020315 ENSRNOT00000027530 3 1 1 81 2 211366181 211366201 ATGACCAGAATCCTTATACGG 57 211366242 211369180 GCCTTATGAGTCATTTCAGTG 57 NA Rattus norvegicus 81 Creg2 ENSRNOG00000013991 ENSRNOT00000046557 1 1 1 80 9 46398810 46398828 TGAAGAACCCTGTAGCCTC 59 46373642 46375942 CGTCATCAGGTTCATCCAG 58 NA Rattus norvegicus 81 Shisa5 ENSRNOG00000020667 ENSRNOT00000077236,ENSRNOT00000056199 1 2 2 60 8 117794326 117794344 ATATAAGATGTGCTGCCGC 58 117794546 117794564 AACCACGGTAGTAGTTGTG 57 NA DesignNoJunction Rattus norvegicus 81 RGD1560394 ENSRNOG00000038150 ENSRNOT00000058062 3 1 1 138 14 82054627 82054645 ATTTGAATTCATGCAGCGC 58 82053721 82053739 CAATGATCTTCAGCGTCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07055937.1 ENSRNOG00000061704 ENSRNOT00000073630 1 1 1 60 7 16068032 16068053 TATTAAACCATCTGCAAGGGAG 58 16067993 16068013 AGTATACAGCAAAGCTACACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pts ENSRNOG00000009250 ENSRNOT00000012434 1 1 1 80 8 54955330 54957593 TCAAAGAATACATGGAGGAGG 57 54955270 54955288 CATCTGCAAAGTATGGCAC 57 NA Rattus norvegicus 81 Plcxd1 ENSRNOG00000049866 ENSRNOT00000072507,ENSRNOT00000073986 3 2 2 81 12 52641956 52641974 TTCCTGGAGACCAAGAAGG 59 52641410 52641428 CATAGCACAAGTTCTCGGT 58 NA DesignNoJunction Rattus norvegicus 81 Dctd ENSRNOG00000013215 ENSRNOT00000017670,ENSRNOT00000059459 1 2 2 60 16 47181460 47206991 GCTGGATACTAAATACCCTTATGTG 59 47181424 47181443 ATTCTTGTTCATGATGGCGT 58 NA DesignNoJunction Rattus norvegicus 81 Vav2 ENSRNOG00000007422 ENSRNOT00000009893,ENSRNOT00000081376 1 2 2 80 3 5843531 5845157 GACATTGAGAAGAACTACATGGG 59 5843473 5843493 CTCCAGGTTGATGAAGATGGT 60 NA Rattus norvegicus 81 Trim25 ENSRNOG00000002341 ENSRNOT00000055674 1 1 1 80 10 76353522 76355022 TTGAGTTTCTGGAGAAAGCTG 59 76355061 76355082 CATGGTCCAGGTCTATCTTAGG 60 NA Rattus norvegicus 81 Leap2 ENSRNOG00000007218 ENSRNOT00000049820 3 1 1 61 10 38774415 38774433 TCTTTGCAGTGCTTCTGAC 58 38771237 38771255 CAGATGAACGTGGACAAGC 59 NA DesignNoJunction Rattus norvegicus 81 Map4k4 ENSRNOG00000014013 ENSRNOT00000083322,ENSRNOT00000019180 2 2 2 80 9 46748524 46751934 TGGAAGAGCAACAAAGGAG 58 46751978 46751996 TCTTCTCCTCCTGTTCTCG 58 NA Rattus norvegicus 81 Gstm4 ENSRNOG00000019221 ENSRNOT00000025994 2 1 1 80 2 210836537 210836557 TATATTCGAACCCAAGTGCCT 59 210834902 210836497 GAGATCTTCTTCAGTCCCTCG 60 NA Rattus norvegicus 81 Tnpo1 ENSRNOG00000014999 ENSRNOT00000020543 3 1 1 80 2 29082084 29084225 ATAGTCGAGTACATGCTTCAG 57 29082024 29082043 CAAAGTCAGCCAGAATTCAC 57 NA Rattus norvegicus 81 Ncoa5 ENSRNOG00000017824 ENSRNOT00000024214 3 1 1 80 3 161469566 161474546 CAGACGAAAGATTATGCGGAG 59 161469506 161469526 TGTGTTGAGGAAGATCAGGTC 60 NA Rattus norvegicus 81 Hspa1l ENSRNOG00000047966 ENSRNOT00000074223 2 1 1 255 20 4959429 4962713 GTAGAGATTCCAGGCCTCG 59 4962932 4962950 CCAATTAGACGTTTGGCGT 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 Wdr47 ENSRNOG00000020330 ENSRNOT00000055862 2 1 1 80 2 211424211 211424231 CTGTTGTTAAGCCATCACCTG 60 211424270 211427278 GCTTCTTTGACTTGTCATCCTC 60 NA Rattus norvegicus 81 AABR07007931.1 ENSRNOG00000049977 ENSRNOT00000072751 3 1 1 77 2 35484888 35484909 AGGGTTGATTTCTGCAAATCTG 60 35482774 35484851 AGAGCATGAGAGCTTAAGGA 58 NA DesignNoJunction Rattus norvegicus 81 Frat2 ENSRNOG00000045543 ENSRNOT00000072055 1 1 1 106 1 261089967 261089985 TTCTCGGAGAATCCAGCAG 59 261089879 261089897 TGATGAGGTTTCCGGAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Oasl2 ENSRNOG00000028814 ENSRNOT00000001600 3 1 1 80 12 47480321 47482698 CTTAAAGTGGTAAAGGGAGGC 59 47480261 47480281 CAGGAACAGAATCATGTCCTG 59 NA Rattus norvegicus 81 Pxmp2 ENSRNOG00000037446 ENSRNOT00000056680,ENSRNOT00000088381 1 2 2 63 12 52454551 52454569 AAGTCAGTGGGCTTCTCAG 59 52458951 52458969 CTTGGCAACAAAGACACTG 58 NA DesignNoJunction Rattus norvegicus 81 Ss18l2 ENSRNOG00000047853 ENSRNOT00000073376 3 1 1 82 8 130350834 130350852 GAGAATGACCAGCTGATCC 58 130350897 130352779 AACACATGCTGATACTGGAC 58 NA Rattus norvegicus 81 RGD1305464 ENSRNOG00000018689 ENSRNOT00000064830 2 1 2 60 8 61917155 61917173 ACAATGGCATGACTGTGTC 59 61914796 61914814 TAAAGCTCTGGCCTCAGTG 59 NA DesignNoJunction Rattus norvegicus 81 Hgfac ENSRNOG00000009572 ENSRNOT00000013257 3 1 1 80 14 80971493 80971511 CAGGACCATGTGTCCTACC 60 80971290 80971452 TTCATCAAAGCACTTCTCTGTG 59 NA Rattus norvegicus 81 LOC689840 ENSRNOG00000031522 ENSRNOT00000043392 1 1 1 80 8 14815541 14815559 CCCAAAGCACTTCAGACAG 59 14815600 14816584 AGCCTTATGTAGAAGCTTAGGA 59 NA Rattus norvegicus 81 Nupr1l ENSRNOG00000000917 ENSRNOT00000001218 3 1 1 60 12 30303940 30303958 ACTGTCGGCTTAGAAGAGG 59 30303898 30303916 GGAAGTCACGCAGATAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trmt13 ENSRNOG00000015140 ENSRNOT00000064484 3 1 1 80 2 219619654 219619673 CTTCCTGTGCTAAGAGAAGG 58 219617292 219619612 TAATGCAAGATCTGTTGCCA 58 NA Rattus norvegicus 81 RGD1306941 ENSRNOG00000010185 ENSRNOT00000013511 3 1 1 96 9 64066827 64066845 CAATGAACTGCTCCTGCTG 59 64066903 64072573 CTCATGGTAATTCTGCACGTC 60 NA Rattus norvegicus 81 Prss45 ENSRNOG00000029649 ENSRNOT00000043249 2 1 1 80 8 119117726 119118002 CGTGCTATGGAGATCCTGG 60 119118046 119118064 TCTCCCACGAGAATATGCC 59 NA Rattus norvegicus 81 Myl7 ENSRNOG00000014409 ENSRNOT00000019335,ENSRNOT00000085847 2 2 2 80 14 86146443 86146639 ATTCAAGGAAGCCTTCAGC 58 86146381 86146401 TGGGAATAAGTCTCCTTCAGG 59 NA Rattus norvegicus 81 LOC687430 ENSRNOG00000000943 ENSRNOT00000001251 2 1 1 60 12 31258308 31258326 AGGGATTAACATGGTGCTG 58 31258349 31258368 TTCCTTGTAAGAAATGCCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wscd2 ENSRNOG00000053045 ENSRNOT00000080783 2 1 1 83 12 48817696 48828545 ACTGGAAAGGCAAAGAATGG 59 48817632 48817650 CAAACTTGAGCCAGTCCAG 59 NA Rattus norvegicus 81 RGD1305537 ENSRNOG00000005112 ENSRNOT00000061680 3 1 1 60 1 231365625 231365644 ACAGAAGAGACAAGATGTGG 57 231365584 231365602 CTGGAAGCATTCTGAGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zswim3 ENSRNOG00000015525 ENSRNOT00000021052 3 1 1 85 3 161272642 161272660 CTTCATTGTCAGGGACTGC 59 161272708 161285319 CCTGCACATATAGGATGTCC 58 NA Rattus norvegicus 81 LOC684208 ENSRNOG00000048369 ENSRNOT00000074214 1 1 1 60 1 167857186 167857206 TTATGTATGCAGTAGCCACAC 58 167857226 167857246 CTCTCCACACGAATGATACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721,ENSRNOT00000091105,ENSRNOT00000072848,ENSRNOT00000077561 2 6 8 60 20 4363497 4363515 GAGAGCCACTTATGCTGAG 58 4363538 4363557 CATTCTAGCTTCTGGGTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rtp3 ENSRNOG00000037167 ENSRNOT00000056100 3 1 1 84 8 119264347 119264365 CAGACAAGGAGCTTCTTCC 58 119262335 119264299 GAAGAACAGTGGAACCTGG 58 NA Rattus norvegicus 81 Mirlet7g ENSRNOG00000050242 ENSRNOT00000072553 2 1 1 60 8 114874466 114874489 GGTAGTAGTTTGTACAGTTTGAGG 59 114874505 114874526 TGTACAGTTATCTCCTGTACCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpatch3 ENSRNOG00000007097 ENSRNOT00000009394 1 1 1 80 5 151797259 151799673 CACTGAGGCTTCAGATCTAGG 60 151799714 151799733 AAAGCTTCATTCTCTGCCCT 60 NA Rattus norvegicus 81 Gpatch3 ENSRNOG00000007097 ENSRNOT00000009394 2 1 1 80 5 151802341 151804365 TACTACGACAAAGATGGTGGA 59 151804407 151804425 CTGACCTTCACGGAGTCTC 60 NA Rattus norvegicus 81 LOC100359574 ENSRNOG00000025154 ENSRNOT00000030108 3 1 1 60 1 281864225 281864246 CTGTAACCATCAAAGAAGGCTC 59 281864265 281864285 ATAGACTGCTGAATGGATTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gstm6l ENSRNOG00000060939 ENSRNOT00000080228,ENSRNOT00000077563 2 2 2 80 2 210700543 210700561 AAGCACCGTATGTTTGAGC 59 210698778 210700500 CTCAAGGGTCTCAAATCGAG 58 NA Rattus norvegicus 81 Lck ENSRNOG00000009705 ENSRNOT00000012936 1 1 1 81 5 147758902 147759061 GTGGATGGGATACTACAATGGA 60 147758842 147758860 CAGGAAGGCATCAGGAGAC 60 NA Rattus norvegicus 81 RGD1559804 ENSRNOG00000045563 ENSRNOT00000071517 2 1 1 88 16 12193800 12193948 CAGACAAGAGTGAGAATGATTCTG 60 12193735 12193754 TAGCTTAACCACAGCCTCTG 60 NA Rattus norvegicus 81 Adam3a ENSRNOG00000017554 ENSRNOT00000023756,ENSRNOT00000078085 1 2 2 80 16 72103395 72104470 ACCTACTTACTCCTGTATAAGGAC 59 72104509 72104527 TGTGAACTTTGGGTTGCAG 59 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000086544 1 1 8 60 20 4389044 4389478 TCATCTGCTACTCCCAGGA 59 4389002 4389020 CTTCTACAGTCCACAGTGC 58 NA DesignNoJunction Rattus norvegicus 81 Spsb4 ENSRNOG00000012862 ENSRNOT00000017363 2 1 1 97 8 104891723 104891741 CTATACCCGGTGGTGAGTG 59 104842284 104842302 CATAGGTCCATCAACGGCA 60 NA DesignNoJunction Rattus norvegicus 81 Zfp710 ENSRNOG00000014278 ENSRNOT00000064034 2 1 1 108 1 141861564 141861582 CTCAAGCACCAGAATGTGC 60 141861654 141865612 ACTCCTTCACACCCTTGTG 60 NA Rattus norvegicus 81 Fkbp15 ENSRNOG00000024663 ENSRNOT00000002083,ENSRNOT00000067076 2 2 2 80 5 78155353 78155374 CACAACACTGAAATTCGAATGG 59 78154293 78155315 CTGTAACTCTTCGACCTTAGTC 58 NA Rattus norvegicus 81 Wdr31 ENSRNOG00000014869 ENSRNOT00000082642,ENSRNOT00000048904 2 2 2 80 5 78315657 78316109 ACTTATCTGTACAGCAGGCC 60 78315596 78315614 GTGAGCAGGGATGTACTCC 60 NA Rattus norvegicus 81 Dhx30 ENSRNOG00000029194 ENSRNOT00000084838,ENSRNOT00000048764 2 2 2 80 8 118160633 118160730 CACATTCGAGATGACGGAC 58 118160571 118160589 AGTTCGTGAATCACCTTCC 58 NA Rattus norvegicus 81 Snx33 ENSRNOG00000017382 ENSRNOT00000023428 3 1 1 93 8 61592718 61592738 CATGACCTCTTCCAAATGCTC 59 61586217 61592663 CAAAGGCACCTTTCTGCAG 60 NA Rattus norvegicus 81 B4galt5 ENSRNOG00000008283 ENSRNOT00000064849,ENSRNOT00000079414 3 2 2 136 3 164055530 164055548 TACCTCTTCATGGTGCAGG 59 164050455 164055435 AGAGGATAATCTGAGTCATTCAGG 60 NA Rattus norvegicus 81 Fgf10 ENSRNOG00000012278 ENSRNOT00000016485 1 1 1 85 2 51673750 51673770 TCCTTCACCAAGTACTTTCTC 57 51673815 51740168 TCTAGGATACTGTACGGACAG 58 NA Rattus norvegicus 81 Umodl ENSRNOG00000037191 ENSRNOT00000056143 2 1 1 80 5 152423033 152423088 CTTCTTTACCAACCACAACC 57 152422972 152422990 CTGTAGTGTCCCTTTCCTG 57 NA Rattus norvegicus 81 Dclk3 ENSRNOG00000033026 ENSRNOT00000044742 2 1 1 81 8 119739938 119739957 AGCTCTTCAACATCATCCAG 58 119740001 119743478 AGATCTTTGGCAGCATCAG 58 NA Rattus norvegicus 81 Pgm3 ENSRNOG00000009515 ENSRNOT00000084694,ENSRNOT00000067699 3 2 2 80 8 94239144 94239162 CAGCAGCGAGAAACTTTCC 60 94236359 94239102 GTCAAGAGGCCATAATCATGG 59 NA Rattus norvegicus 81 Cnn3 ENSRNOG00000011559 ENSRNOT00000015579 1 1 1 80 2 225005341 225028165 CGAGGTCAAGAACAAGATCG 59 225028207 225028226 CCTGTCACCTCTTCTATCCA 58 NA Rattus norvegicus 81 Trim71 ENSRNOG00000030098 ENSRNOT00000047198 2 1 1 112 8 122556268 122566995 CCATTCAGCTGAGCATTGAG 59 122556175 122556194 CAGAGCTTTCTTGTGTCTCG 59 NA Rattus norvegicus 81 LOC683897 ENSRNOG00000047118 ENSRNOT00000072716 3 1 1 80 20 48276487 48276506 ACCGTCTACGAAGAGAAGAC 59 48276199 48276447 CAGAATCCGTCTCTTTAAGCTC 59 NA Rattus norvegicus 81 Scml4 ENSRNOG00000026110 ENSRNOT00000087230,ENSRNOT00000064905 1 2 2 80 20 47684076 47684094 TCCGGTTTGTGAAAGATGC 59 47684136 47686128 CATTGCCATCAATCTCATGCT 60 NA Rattus norvegicus 81 Wwc2 ENSRNOG00000013248 ENSRNOT00000017966 3 1 1 80 16 47462928 47462947 GCCCTTGATGAATATGTGCG 60 47462989 47464127 TGAAGATCCTGAGAAGAGGC 59 NA Rattus norvegicus 81 RGD1562618 ENSRNOG00000026238 ENSRNOT00000033397 2 1 1 89 8 63287492 63287510 GCATGAAGATGGTCATCGG 59 63287563 63296311 CGATCTGACTCACCACCTC 60 NA Rattus norvegicus 81 RGD1304595 ENSRNOG00000008712 ENSRNOT00000085461,ENSRNOT00000011799 2 2 2 80 5 79398799 79400910 GAGTGTGATACAGCTCTGGT 59 79400950 79400971 TTCATTTCTTGGACATGATCGG 59 NA Rattus norvegicus 81 Slc20a2 ENSRNOG00000019490 ENSRNOT00000084330,ENSRNOT00000026418 3 2 2 102 16 74328466 74330900 AATAGCGGGCAGGTTAGAG 59 74328382 74328402 AGGAAGCTCCTTAAAGACAGG 60 NA Rattus norvegicus 81 Pdss2 ENSRNOG00000042962 ENSRNOT00000067169 2 1 1 80 20 48161159 48191951 GAACTACACTAAGTTGCGGG 59 48191993 48192012 TTTCCATGGTAACGACACAG 58 NA Rattus norvegicus 81 LOC100360884 ENSRNOG00000000376 ENSRNOT00000000423 2 1 1 60 20 26534600 26534622 CTACTTCAAGAAAGTACCTCGTC 59 26534641 26534660 CCAAACTCCCTTCTTCTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1705 ENSRNOG00000048714 ENSRNOT00000071933 3 1 1 60 20 1021780 1021800 CTGAAGCACCTTTCCATTCTG 60 1021819 1021840 CAACATACTGAGGAACTGTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1566373 ENSRNOG00000032408 ENSRNOT00000047773 1 1 1 60 20 23466983 23467004 AGAAAGAAGATTGTGCTGAGAC 59 23466944 23466962 GCATCCTCTTAGATCCGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1566373 ENSRNOG00000032408 ENSRNOT00000047773 3 1 1 60 20 23466931 23466949 GGATGCTGGCCATTAAGAG 58 23466889 23466909 CCCTTTCTCTTCTTGTCACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc25a15 ENSRNOG00000011881 ENSRNOT00000078971,ENSRNOT00000050637 1 2 2 81 16 74548731 74550599 GATGAACTGGGTCCTATCCC 59 74550643 74550661 AATCCACCGGATACACAGC 60 NA Rattus norvegicus 81 Sdhb ENSRNOG00000007967 ENSRNOT00000010593 1 1 1 80 5 159499502 159499520 GAAGGATGAGTCCCAGGAG 59 159499563 159501994 CACTCATACAATCCGTCCAG 58 NA Rattus norvegicus 81 AABR07045621.1 ENSRNOG00000049150 ENSRNOT00000073994 2 1 1 60 20 53776429 53776447 CTGTAGGCTTTATGCCACG 59 53776387 53776405 TTCAAGGAAGCTGGTTGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrp4 ENSRNOG00000015285 ENSRNOT00000021353,ENSRNOT00000086242 3 2 2 80 3 80390701 80391789 TGGACAGATGCAGGTACAG 59 80391833 80391851 AAGGTTCTCCCAGATGAGC 59 NA Rattus norvegicus 81 B3galt4 ENSRNOG00000000471 ENSRNOT00000000550 3 1 1 60 20 5446818 5446839 CATCCTCAAGACAGATGATGAC 59 5446858 5446878 TATCAGTTCTGACACCAGCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044281.1 ENSRNOG00000045959 ENSRNOT00000074812 3 1 1 97 20 969453 969473 TGATACATCCCAAGAGGCT 58 969374 969395 CAACGAGAATTCTGACATAGGA 58 NA Rattus norvegicus 81 Tyrp1 ENSRNOG00000029318 ENSRNOT00000046503 3 1 1 84 5 98397653 98399294 CAGTGGAAGGTTACAGCGA 60 98399342 98399360 CCATTCAGGAAGAGGTGGG 60 NA Rattus norvegicus 81 Qrsl1 ENSRNOG00000026049 ENSRNOT00000018892 1 1 1 80 20 48860400 48860912 TACAGTACGGTCACAGGTC 59 48860338 48860357 CATTGAACCCTTCCTGTCTG 59 NA Rattus norvegicus 81 Olr1675 ENSRNOG00000047267 ENSRNOT00000048277 1 1 1 60 20 34483 34504 TAGTAACTCCTACACTGAACCC 59 34444 34465 GCCCTCTTTACATCCTTATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1684 ENSRNOG00000040183 ENSRNOT00000061839 3 1 1 60 20 573062 573083 TGTTATCCTGCTAGTGTTACCT 59 573102 573122 TTTCACGATAGCACCATAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhd ENSRNOG00000017130 ENSRNOT00000023187 2 1 1 80 5 153218713 153221464 AGATCAACATGGTTCACATCC 58 153221504 153221524 GAGAAGAAATCAGGCAACTCG 59 NA Rattus norvegicus 81 RGD1309730 ENSRNOG00000037567 ENSRNOT00000056935 1 1 1 80 3 91100382 91122611 CAGATGAACAAGGATTGGATGG 60 91100323 91100341 AGCAGGAACATAAGCAGGA 59 NA Rattus norvegicus 81 Rab11fip1 ENSRNOG00000058940 ENSRNOT00000078128,ENSRNOT00000086082 3 2 2 80 16 69070875 69074895 TCATGAAGAAATACCAGCCCT 59 69074937 69074955 TGAGGACCAACTGGATCAG 59 NA Rattus norvegicus 81 Defb5 ENSRNOG00000038126 ENSRNOT00000018653 1 1 2 117 16 75597443 75599433 CCTTTCTGTCTTTACTCAAAGC 58 75597347 75597365 TTTACCCAGTCCACAAGTG 57 NA Rattus norvegicus 81 Adnp ENSRNOG00000010975 ENSRNOT00000014595 2 1 1 104 3 164946964 164964581 CCAGCCAAGAAACTATGTTCC 59 164946880 164946900 AGTATTCCAACCCAATGTCAC 58 NA InUTR Rattus norvegicus 81 Rnf38 ENSRNOG00000013956 ENSRNOT00000077367,ENSRNOT00000060203,ENSRNOT00000091944 2 3 3 80 5 59630464 59630482 CCGTCTGTTACATCCAGCT 60 59624446 59630420 GTTCCTTGATGGAGCTGGT 60 NA Rattus norvegicus 81 Cyp4v3 ENSRNOG00000042426 ENSRNOT00000019302 3 1 1 80 16 50126712 50132475 TTCATGTTTGAGGGTCACG 58 50132518 50132537 CTGGACTTCTGGATTAGAGC 58 NA Rattus norvegicus 81 Fam46b ENSRNOG00000056153 ENSRNOT00000086144 3 1 1 119 5 151692474 151698094 CAGATTGTACAGGTAGTTCGC 59 151698175 151698193 CTTGTAGCCTAGGCCACTC 60 NA Rattus norvegicus 81 Zhx3 ENSRNOG00000027988 ENSRNOT00000032588 1 1 2 95 3 156775222 156775240 GAACAGTGAAGCATGGGAG 59 156765491 156775163 CAGTCTGTTTCGAGCTGAC 59 NA Rattus norvegicus 81 Defb1 ENSRNOG00000013768 ENSRNOT00000018427 2 1 1 61 16 75309003 75309021 TCTTCTCCCAGATGGAGCT 60 75294614 75294632 TTGATCTGTTCTGCGTCCA 59 NA DesignNoJunction Rattus norvegicus 81 Kcnu1 ENSRNOG00000014741 ENSRNOT00000019935 2 1 1 80 16 70939571 70939590 GATTCGGACATGCTAGACAG 58 70934947 70939528 AGATCGTTTCAGAACCACC 58 NA Rattus norvegicus 81 RGD1563348 ENSRNOG00000054563 ENSRNOT00000082857 1 1 1 80 3 72071322 72071459 ACAACAGTCGTGTTGAACTC 59 72071261 72071279 CCATCTCTTGAGGCTCAGG 60 NA Rattus norvegicus 81 Bpifb4 ENSRNOG00000034174 ENSRNOT00000044574 1 1 1 80 3 149434178 149435297 ATGGCATGTTTGAAGATCTCC 59 149437594 149437612 CAGGGTATTGCTGGAACAC 59 NA Rattus norvegicus 81 Upf3a ENSRNOG00000017397 ENSRNOT00000066521 2 1 1 80 16 81524624 81524643 CTCCATTCCAGAAGATTGCC 59 81524685 81524820 TATACTCTGGGTCGTCTTCG 59 NA Rattus norvegicus 81 Pramef17 ENSRNOG00000042820 ENSRNOT00000048366 2 1 1 80 5 162440780 162441560 GAGTTACTCAGGTGTCTGGT 59 162440719 162440740 TGACTCCAAATCTGACTGAGAG 60 NA Rattus norvegicus 81 Adam18 ENSRNOG00000017683 ENSRNOT00000023805 3 1 1 80 16 72166767 72166787 ATGGGATCTGACATTATGGCT 59 72166826 72167042 GTTCAGCTGAGTGAACATAGTG 59 NA Rattus norvegicus 81 Nelfcd ENSRNOG00000047874 ENSRNOT00000073634 1 1 1 80 3 172510899 172510920 TTATGGGAGAAGACTACTTCGG 59 172510958 172514664 CAGAATCTTCTTCCTGATGCTG 59 NA Rattus norvegicus 81 Rcc1 ENSRNOG00000050106 ENSRNOT00000085482,ENSRNOT00000075127 2 2 2 81 5 150514397 150514416 TCTACAGGATGTTGTGCAGG 60 150514195 150514353 GCCAAAGGAGTAGACCTGG 60 NA Rattus norvegicus 81 Atp9a ENSRNOG00000049484 ENSRNOT00000071672 2 1 1 86 3 165421979 165424512 GCATCAAGGTTTGGATGCT 59 165421911 165421929 CTTGGTTTCTGGTCACCAG 58 NA Rattus norvegicus 81 Ghrh ENSRNOG00000007782 ENSRNOT00000010298 2 1 3 117 3 153450221 153451892 GGAGAGCATCTTGGTCCAG 60 153450122 153450141 GTGTAGCAAAGTGTACAGCG 60 NA Rattus norvegicus 81 Defb29 ENSRNOG00000023195 ENSRNOT00000031683 3 1 1 108 3 148009122 148010117 TTGACAAGACCACAGGTGG 60 148009032 148009052 TATTTCTGGCAGGCATTTCTG 59 NA Rattus norvegicus 81 Birc7 ENSRNOG00000043311 ENSRNOT00000068252 1 1 1 61 3 176441403 176441421 TTGTGGAAAGAATCCAGGC 58 176441446 176441547 CTGTTCTTCCCGTTGTTCC 59 NA DesignNoJunction Rattus norvegicus 81 Gata5 ENSRNOG00000058983 ENSRNOT00000089971 3 1 1 118 3 175707266 175708634 GACCACCTTCGTACCTGAC 60 175707166 175707185 TGCATAGATAGTGTCCGGTG 59 NA Rattus norvegicus 81 Psma7 ENSRNOG00000056853 ENSRNOT00000082686 2 1 1 83 3 175421140 175421160 AGAACTACACAGATGATGCCA 59 175420667 175421095 CTGACTGGACCACTTCCAG 60 NA Rattus norvegicus 81 Whsc1l1 ENSRNOG00000015621 ENSRNOT00000066974,ENSRNOT00000088458 3 2 2 80 16 71163395 71166296 ATTACAGAAAGGTGCCAGC 58 71163333 71163351 GTTTCCACATCAGTCGAGG 58 NA Rattus norvegicus 81 LOC100912321 ENSRNOG00000032890 ENSRNOT00000043510 2 1 1 60 16 34795993 34796011 TGACTCACACCACCTTCAC 60 34796033 34796053 GCCACGATAATCAAAGAGTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zbtb46 ENSRNOG00000014592 ENSRNOT00000020168,ENSRNOT00000078661 3 2 2 80 3 176915014 176925763 CCGAGACTCAAATGTGGAC 58 176914952 176914970 TGAGCATAGAGCTCTGCTC 59 NA Rattus norvegicus 81 Defb37 ENSRNOG00000038115 ENSRNOT00000058002 3 1 1 81 16 75083218 75094836 TTCCAGATCAACCCATTTGC 59 75094880 75094898 TTGGGCACTGGAGTATGTG 60 NA Rattus norvegicus 81 Defb13 ENSRNOG00000038157 ENSRNOT00000058071 1 1 1 79 16 75027271 75028935 ATTCAACTTCACCCAGCCA 60 75027210 75027228 CAGGCAGTTTCACATCGTC 59 NA DesignNoJunction Rattus norvegicus 81 LOC103695172 ENSRNOG00000032195 ENSRNOT00000040114 1 1 1 89 3 59837458 59839838 TTGTAACTGATTGCCAGCG 59 59839891 59839909 CCTCTGCTTCTTCCAAGTC 58 NA Rattus norvegicus 81 Scrn3 ENSRNOG00000018657 ENSRNOT00000025255,ENSRNOT00000081881 1 2 2 80 3 60029831 60032569 AGAAAGTCCAAGGAGTTCGT 59 60032612 60032630 TCCTCATGTCTGGATGCTC 59 NA Rattus norvegicus 81 Lamp1 ENSRNOG00000019629 ENSRNOT00000026580 1 1 1 82 16 81691005 81691108 TTCCTGATGCCATAGAGCC 59 81690941 81690960 CTTGTATGAGTTGCCGACAC 59 NA Rattus norvegicus 81 Dhx35 ENSRNOG00000015928 ENSRNOT00000021435,ENSRNOT00000084866 3 2 2 80 3 155304312 155304332 ACAACCGTCATTTACAATCCC 59 155304373 155308530 GTTCCTAAGCTTGAACACGG 59 NA Rattus norvegicus 81 Chn1 ENSRNOG00000017939 ENSRNOT00000068745 3 1 1 80 3 60535994 60536013 CACTGGTGTGAATACTGTGC 59 60526498 60535953 AACATTCAACCCACAATCTGC 60 NA Rattus norvegicus 81 Rasa3 ENSRNOG00000017671 ENSRNOT00000080963,ENSRNOT00000067508 1 2 2 80 16 81336575 81336595 TCATCTTCCTGAGGTTCTTCG 60 81335060 81336533 TCTGTGGATCCGTATGGTG 59 NA Rattus norvegicus 81 AC135696.1 ENSRNOG00000058908 ENSRNOT00000081634 1 1 1 60 16 37500170 37500191 GATGCTTCTGTCAACTTCTCAG 59 37500212 37500230 ACATGGTCTTCCACCTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir147 ENSRNOG00000036445 ENSRNOT00000054556 2 1 1 61 3 114775352 114775370 AGTGGAAACACTTCTGCAC 58 114775395 114775413 TGTAGCAGAAGCATTTCCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tex29 ENSRNOG00000033585 ENSRNOT00000041223,ENSRNOT00000078867 3 2 2 81 16 82999376 82999394 TGTCAGCTGCTACCATGAG 60 82993849 82999331 ATGTCACAAACTGCGAACG 60 NA Rattus norvegicus 81 Ahcy ENSRNOG00000017777 ENSRNOT00000024310 1 1 1 80 3 150590242 150590260 GTGATGGCACAGATTGAGC 59 150588660 150590199 CTCATCCAGCTTCTTAGGCA 60 NA Rattus norvegicus 81 Cdca7 ENSRNOG00000001514 ENSRNOT00000002066 3 1 1 80 3 59159764 59159782 ATGTCAGAACTGGAGAGCT 58 59159823 59160645 GGACTTTGAATCTTTGGTTCTG 58 NA Rattus norvegicus 81 LOC367515 ENSRNOG00000049519 ENSRNOT00000082726 1 1 2 80 19 36270945 36326970 AGGCTATAAGTACATAGCACCC 59 36270886 36270907 AGATGAGGGAGTCTTACAACAC 60 NA Rattus norvegicus 81 Mbnl1 ENSRNOG00000014076 ENSRNOT00000088461,ENSRNOT00000036808 3 2 2 82 2 150846714 150855970 CAGACAGACTGGAGGTGTG 60 150856016 150856034 AGCAGGATGAGCAAATCGA 60 NA Rattus norvegicus 81 Mcpt2 ENSRNOG00000020625 ENSRNOT00000027988,ENSRNOT00000091757 3 2 3 83 15 34862328 35032651 TGGAGCTGAGGAGATTATCG 59 35032696 35032715 TTCTCAGTGACGATGTCCAG 60 NA Rattus norvegicus 81 Zfp131 ENSRNOG00000015925 ENSRNOT00000021608,ENSRNOT00000089303 2 2 2 83 2 52505527 52507205 GAATGCCAGGTCTGTAACAG 59 52505463 52505483 GTTGGGTTTATCTCCAGTGTG 59 NA Rattus norvegicus 81 Exosc8 ENSRNOG00000051623 ENSRNOT00000086214 3 1 2 121 2 143928168 143929007 CCAGGGAAGACTACGATGG 59 143926779 143926798 ATTGACTTCCGCTAAAGCAG 59 NA Rattus norvegicus 81 Slmap ENSRNOG00000011307 ENSRNOT00000089377,ENSRNOT00000067464 3 2 3 111 16 2142304 2158118 TTTACAAGAGAAGCTGATGGTC 59 2138551 2138575 CAGAGTATCTGATAAGTCAGATTCC 59 NA Rattus norvegicus 81 Mccc2 ENSRNOG00000017752 ENSRNOT00000023900,ENSRNOT00000076389 3 2 2 82 2 30181800 30181823 GCCTAAGATAACTGTCATAATCGG 59 30181375 30181764 GAAATCTTGGACTATATGCTCTGC 60 NA Rattus norvegicus 81 Timm10b ENSRNOG00000050846 ENSRNOT00000075892,ENSRNOT00000075597,ENSRNOT00000076631 1 3 3 146 1 170471306 170471466 ACTGAGAAACTTGCGAGAC 58 170471745 170471763 GAATGGATGAGCTTCCCAG 58 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000085775 2 1 6 106 1 76475250 76475268 CATGGTTTGAGCACATCCG 60 76260552 76475186 CTTCTTTATGGATCCCATTGTATCC 60 NA Rattus norvegicus 81 Gck ENSRNOG00000061527 ENSRNOT00000086474 2 1 3 115 14 86158921 86158939 CTGGTCAAAGTGGGAGAGG 60 86157807 86158844 TTCTTGTGCTTCATCATCTCG 59 NA Rattus norvegicus 81 Slc26a7 ENSRNOG00000006096 ENSRNOT00000067331 1 1 2 80 5 28092436 28092454 GCTTATCGGAGTTTGAGCT 58 28050119 28092394 ACGCATAGATCTGAATCACTC 58 NA Rattus norvegicus 81 Cdkl5 ENSRNOG00000003742 ENSRNOT00000072627 1 1 2 80 X 35721927 35771516 GATCTACAGACCCAGATTCCC 60 35771558 35771576 CTCGACGTTTATGCAACCA 59 NA Rattus norvegicus 81 Fancb ENSRNOG00000003346 ENSRNOT00000004456 1 1 2 80 X 31124185 31124349 GTAAATGTCAGCAGCTATGCC 60 31124125 31124147 CAGTGTCTTTACAATGAGGTCTG 60 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000076558,ENSRNOT00000068553 1 2 6 87 17 84171263 84171281 AACCTATAAGGCCACTCCG 59 84169769 84171212 TTTGTGTTTGACCGCACTC 59 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000068553 3 1 6 80 17 84174982 84175002 GCCATTTCTGATCCTCTTGAG 59 84171281 84174941 TGGCTCTTTATACTGGAACCT 59 NA Rattus norvegicus 81 Cfap46 ENSRNOG00000027374 ENSRNOT00000074298 2 1 2 82 1 212021557 212021811 GCACTCAAGATGAAAGAGCC 59 212021494 212021512 AGGAACTGAGTGACTGGTG 59 NA Rattus norvegicus 81 Cfap46 ENSRNOG00000027374 ENSRNOT00000029027 1 1 2 82 1 211990152 211990170 AATGTACGCCCTACCTTGG 60 211989947 211990107 AATTCACAAACCTCCACAGC 59 NA Rattus norvegicus 81 Simc1 ENSRNOG00000016932 ENSRNOT00000064274,ENSRNOT00000044559 1 2 3 98 17 10617655 10618280 AAATCCAACAGCTGCATCC 59 10611065 10611083 GTCCAGGTAAAGTTTGCCC 59 NA Rattus norvegicus 81 Dgki ENSRNOG00000026705 ENSRNOT00000033268,ENSRNOT00000079285 2 2 2 80 4 64681869 64681888 ACATCCTCTTGGTCTTCCTG 59 64660470 64681827 TTCACAGCATTCTCACTCCA 59 NA Rattus norvegicus 81 Macrod1 ENSRNOG00000021174 ENSRNOT00000091465,ENSRNOT00000028749 1 2 2 88 1 222319577 222319595 GGACAAGCAGCTGAATGAG 59 222319647 222438073 AGTTGTTGGCAGCATTGAC 59 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000002220,ENSRNOT00000002223,ENSRNOT00000063864 2 3 7 80 11 46244235 46248741 CATTACATCTGTGCCTTTAGAG 57 46244176 46244196 TGTAGTTCCTCTTCACTAGGT 58 NA Rattus norvegicus 81 Pld5 ENSRNOG00000003997 ENSRNOT00000005332 1 1 2 104 13 94209152 94355043 TAAGCTGGAACACTCCCAG 59 94209066 94209084 TCTCCCATGATGTCCACAG 59 NA Rattus norvegicus 81 Prl5a2 ENSRNOG00000039075 ENSRNOT00000088228,ENSRNOT00000059757 3 2 2 80 17 38461285 38462011 GTCATTGCTCAAATTGGTTCG 59 38462052 38462071 AGATGCAATGATGGAAGTCC 58 NA Rattus norvegicus 81 Pex5 ENSRNOG00000010407 ENSRNOT00000085675,ENSRNOT00000014030 1 2 3 80 4 156426702 156427116 ACTGAAGATGAGTTGGTGG 57 156426640 156426658 CATCTTGAAGGTCTGAGGG 57 NA Rattus norvegicus 81 Prl7b1 ENSRNOG00000016742 ENSRNOT00000088868,ENSRNOT00000022447 1 2 2 80 17 39160774 39161328 GCCAAGAAGGTTAAACATGGA 59 39161368 39161388 ATTGGTTGACTGTAACGATGC 59 NA Rattus norvegicus 81 Rhov ENSRNOG00000013380 ENSRNOT00000079339,ENSRNOT00000018277 3 2 2 123 3 111080188 111080383 CACTTTCTCCGTGCAAGTC 59 111079889 111079908 CAGAAAGACATCGGTATCCG 58 NA Rattus norvegicus 81 Med26 ENSRNOG00000012270 ENSRNOT00000016355 1 1 2 91 16 19001397 19047177 CAACATCCGGAACATGGTG 59 19047232 19047685 CTAGTCGTGTCTCCTCCAG 59 NA Rattus norvegicus 81 Cnksr2 ENSRNOG00000007014 ENSRNOT00000080512,ENSRNOT00000009802 2 2 2 80 X 39885420 39885439 GCAAATGGATGCATTGAGAC 58 39885480 39907538 GAGGACTGCTGAAATGTATGG 59 NA Rattus norvegicus 81 Adgrb1 ENSRNOG00000029450 ENSRNOT00000076380 1 1 5 133 7 115821783 115821801 TAGATCGACAAGAGGAGGG 58 115823287 115825575 TTTGTTCAGCACTGTCAGG 58 NA Rattus norvegicus 81 Npm1 ENSRNOG00000004616 ENSRNOT00000006591,ENSRNOT00000064744 2 2 2 80 10 18084112 18084786 AAGGTCAAAGGGTCAAGAG 57 18084050 18084070 ATGTCTTCTACAGAGCTAGGT 58 NA Rattus norvegicus 81 Tmem38a ENSRNOG00000011912 ENSRNOT00000064060,ENSRNOT00000086424 3 2 2 95 16 18962073 18962091 TGTTCACCTTGCAACAGAC 59 18960734 18962014 TCAGGAACACCTTACACGA 58 NA Rattus norvegicus 81 Idh2 ENSRNOG00000013949 ENSRNOT00000019059 2 1 2 95 1 141875222 141875241 CAGACTCTGGAGAAGGTGTG 60 141874716 141875164 CAGCTTCACATTGCTGAGG 59 NA Rattus norvegicus 81 Gon4l ENSRNOG00000020297 ENSRNOT00000078913 3 1 3 90 2 188174019 188174037 AGGACTTTCGAACTGACCG 60 188174892 188180295 ACTACAGATTGCACCGTCTC 60 NA Rattus norvegicus 81 Esrp1 ENSRNOG00000008184 ENSRNOT00000067129 2 1 2 118 5 24589420 24589440 CTGCTAATCTTAGCAGTGTCC 59 24578516 24589343 TTTCAAACACTGGTAACCTTGG 59 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000089534,ENSRNOT00000080470 2 2 10 81 2 231250894 231255694 AACAGCAACAAGATGATGAGAC 59 231250834 231250857 GCTAAGACAGGAACTTCATTAACC 60 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000089534,ENSRNOT00000080470 3 2 10 82 2 231250896 231255696 ACAACAGCAACAAGATGATGAG 60 231250835 231250859 CTAAGACAGGAACTTCATTAACCAG 60 NA Rattus norvegicus 81 Yipf5 ENSRNOG00000014564 ENSRNOT00000040877 3 1 2 80 18 33413762 33413815 AAGTAGGACCTTGGGAATCG 59 33413701 33413720 CGATGCTGTAACTTGTCTGG 59 NA Rattus norvegicus 81 Ube2j1 ENSRNOG00000007434 ENSRNOT00000075992,ENSRNOT00000041271 2 2 3 80 5 48281272 48282414 CTTCATGGAGCATAAGGACAG 59 48282455 48282474 CTAGAGAACCTATGGCTCCC 59 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000078903,ENSRNOT00000027487 3 4 7 83 1 215610468 215610577 ACCTGAAGAGTGTGATGCTC 60 215610623 215610641 GGTAGTTCTGCTTCTCGGA 59 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000078903,ENSRNOT00000027487 1 4 7 80 1 215610467 215610575 CACCTGAAGAGTGTGATGC 59 215610619 215610637 GTTCTGCTTCTCGGATTCG 59 NA Rattus norvegicus 81 Slc7a1 ENSRNOG00000000924 ENSRNOT00000082850,ENSRNOT00000001234,ENSRNOT00000089804 1 3 3 80 12 8101781 8101799 TCTCACCCAAGAACATGGA 58 8101842 8102178 TGATAAGAACGGCTAGGAGG 59 NA Rattus norvegicus 81 Aspdh ENSRNOG00000019424 ENSRNOT00000086917,ENSRNOT00000067562 3 2 2 89 1 100471812 100472065 CTACACTTGAGGAAAGGCAC 59 100472116 100472135 CATGACGGAGGATTTGTACC 59 NA Rattus norvegicus 81 Zfp771 ENSRNOG00000043225 ENSRNOT00000023999 1 1 1 132 1 198690904 198690922 GAAACTCAAGAGCCCTGTG 59 198700240 198700258 ATGTTTGGCTAGTGTGGAG 58 NA DesignNoJunction Rattus norvegicus 81 Mlana ENSRNOG00000036608 ENSRNOT00000054764,ENSRNOT00000089563 1 2 2 86 1 247871969 247876370 TATCACTGCTGAAGAGGCC 59 247876420 247876438 CTTCTGCAATACCAGCAGC 59 NA Rattus norvegicus 81 Micalcl ENSRNOG00000016210 ENSRNOT00000085326 3 1 2 91 1 177183922 177183940 GACTTCAGTAAGGATCGGC 58 177183995 177187239 CTGTATCAGAGCTGCTGTC 58 NA Rattus norvegicus 81 Slc22a5 ENSRNOG00000008432 ENSRNOT00000011340 3 1 4 88 10 39212384 39212403 TTCGAGATGTTTACAGTGCT 57 39211433 39212334 AGAATTTCTGTTCCCAGGAC 58 NA Rattus norvegicus 81 Ppp2r2b ENSRNOG00000018851 ENSRNOT00000041188,ENSRNOT00000079585 3 2 2 80 18 37007715 37007734 TGACCAGAGACTATCTGACC 58 36988931 37007673 AGTCATGAACCTGGTATGTC 57 NA Rattus norvegicus 81 Cyp2t1 ENSRNOG00000028891 ENSRNOT00000068322 3 1 2 97 1 83966783 83966802 ACTTTGCACTTGAGCACTG 59 83966864 83966882 GCTTGAAATTCGTCCAGCA 59 NA Rattus norvegicus 81 Zfp384 ENSRNOG00000017066 ENSRNOT00000036654 1 1 6 80 4 157538802 157538820 TCAGGCATCTGTTACCCAG 59 157538864 157539361 ATTACCAAACCAGGACCCG 60 NA Rattus norvegicus 81 Zfp384 ENSRNOG00000017066 ENSRNOT00000081640,ENSRNOT00000023192,ENSRNOT00000055985,ENSRNOT00000023240,ENSRNOT00000036654 3 5 6 93 4 157550395 157550419 TCACTAGAGGCTCATTTATCTACAC 60 157550464 157551050 GATATGTTTCTGATGTATATGCCCG 60 NA Rattus norvegicus 81 Zfp384 ENSRNOG00000017066 ENSRNOT00000081640,ENSRNOT00000023192,ENSRNOT00000055985,ENSRNOT00000023240,ENSRNOT00000036654 3 5 6 93 4 157550395 157550419 TCACTAGAGGCTCATTTATCTACAC 60 157550464 157551050 GATATGTTTCTGATGTATATGCCCG 60 NA Rattus norvegicus 81 Ypel5 ENSRNOG00000026742 ENSRNOT00000035362 2 1 1 79 6 24080568 24080586 CTCTACTCGGTTCACAGGC 60 24082907 24082927 CTTGAACTTCACTGTACTGCA 59 NA DesignNoJunction Rattus norvegicus 81 Il27ra ENSRNOG00000005747 ENSRNOT00000007726 2 1 2 91 19 25158095 25158113 CTCAAGATGGTGACAGCCT 59 25153748 25158041 CTTGGTTTGACTGCTCACTG 60 NA Rattus norvegicus 81 Il27ra ENSRNOG00000005747 ENSRNOT00000085630 1 1 2 80 19 25155960 25156060 TCATAAAGGAATTAGCACCGC 59 25155900 25155918 ATGCTACAACAGGTGTCCC 60 NA Rattus norvegicus 81 Rinl ENSRNOG00000025354 ENSRNOT00000036907,ENSRNOT00000078156 3 2 2 80 1 86979515 86980096 TAAGCACTCAGATCCTCGTC 59 86980139 86980157 TAGAGCTGGTTCACCACAG 59 NA Rattus norvegicus 81 Mapk9 ENSRNOG00000002823 ENSRNOT00000003987,ENSRNOT00000083688 3 2 3 80 10 35361980 35363419 AGGAGAATGTTGATATCTGGTC 58 35363457 35363478 GGTCAGTACCTTGGAATATCAC 58 NA Rattus norvegicus 81 Eif6 ENSRNOG00000049497 ENSRNOT00000078688 2 1 2 84 3 151359871 151359889 GGAGAGTGTCTTCAAGCTG 58 151359482 151359825 GGTCAGTGATCTGTCAATGAG 59 NA Rattus norvegicus 81 Lilra5 ENSRNOG00000027808 ENSRNOT00000038802,ENSRNOT00000079498 2 2 2 80 1 73656628 73659483 CATGTGTCAGAAGCAGCTC 59 73656438 73656456 GTAATCCTGGTGCTGTGAG 58 NA Rattus norvegicus 81 Iars ENSRNOG00000014616 ENSRNOT00000019862 3 1 2 158 17 15358008 15358027 GTTTAACAGGAACTGTGGGC 60 15356585 15357893 CTGTAATTTCTTGTGTCTGAGTCTC 60 NA Rattus norvegicus 81 Lsr ENSRNOG00000021053 ENSRNOT00000028585 3 1 2 81 1 89391732 89391750 TTACTGCTCTGTGGTCTCG 59 89388043 89391688 AAAGAGCCAATCAAGGACGA 60 NA Rattus norvegicus 81 Nxpe3 ENSRNOG00000001608 ENSRNOT00000079598 1 1 2 80 11 47200233 47218315 GAGGAATCTCGCATACTTGG 58 47218357 47218376 GCCTGCGAGGAAATATACTG 59 NA Rattus norvegicus 81 Zfp354c ENSRNOG00000029205 ENSRNOT00000081026,ENSRNOT00000000248 2 2 2 96 10 36312759 36313867 CTGCCTAGATTTCCAGATTCAG 59 36312684 36312702 TCTGTTCTTTAGCAGCCCA 59 NA Rattus norvegicus 81 Zfp354c ENSRNOG00000029205 ENSRNOT00000081026,ENSRNOT00000000248 3 2 2 97 10 36312759 36313867 CTGCCTAGATTTCCAGATTCAG 59 36312683 36312702 ATCTGTTCTTTAGCAGCCCA 60 NA Rattus norvegicus 81 Ppp3cc ENSRNOG00000009745 ENSRNOT00000012993 3 1 4 112 15 51916287 51916305 TTTCACATGGTCTTTGCCT 58 51904476 51915291 TGTAGTGATCTTCCTCTTCGA 58 NA Rattus norvegicus 81 Nmral1 ENSRNOG00000003794 ENSRNOT00000005109 1 1 2 80 10 11050638 11050657 TTGTGACCAATTACTGGGAG 58 11051789 11052254 CTAGAAGCTTGCCTTGGTC 58 NA Rattus norvegicus 81 Parpbp ENSRNOG00000004682 ENSRNOT00000006249 1 1 2 80 7 28711651 28711669 GCTATGTGGTCCAGACTCC 60 28701779 28711608 GTGAATTCTCCGTGATGCTG 59 NA Rattus norvegicus 81 Kcnh2 ENSRNOG00000009872 ENSRNOT00000013800 2 1 2 87 4 7358506 7373819 TCTACCGGAAAGATGGGAG 58 7373868 7373888 AGGATAAACATGATGACAGCC 58 NA Rattus norvegicus 81 RGD1311739 ENSRNOG00000021245 ENSRNOT00000028859,ENSRNOT00000077819 3 2 2 86 3 123690557 123693736 CTAGTCAAGGTAGGCTTCCT 58 123690490 123690508 GATGTCCTTGCTCAGTCTG 58 NA Rattus norvegicus 81 Tppp ENSRNOG00000028261 ENSRNOT00000039166,ENSRNOT00000081225 3 2 2 94 1 31871822 31880989 CAAGATCAAAGGGAAGTCCT 57 31871747 31871765 TGCTCTTATCCTTGAACCG 57 NA Rattus norvegicus 81 Ddx56 ENSRNOG00000004670 ENSRNOT00000089384,ENSRNOT00000006642 2 2 2 80 14 86379280 86379591 CTTCTCTAGAAAGGCTAAGAAGG 58 86379222 86379240 GTGGGTTTAGGCTTCTTCC 58 NA Rattus norvegicus 81 Pms2 ENSRNOG00000001040 ENSRNOT00000067021,ENSRNOT00000078603 2 2 2 80 12 12724605 12724624 GAATGTTCGACAGTGATGCA 59 12722460 12724568 GTAGCTTTACTAAGTTACCTTCGAC 59 NA Rattus norvegicus 81 Sf3a3 ENSRNOG00000007629 ENSRNOT00000087416 2 1 3 80 5 142702812 142702833 GCTATCATGAGGAGAAAGAACG 59 142702873 142703515 CCTCCATGTATCTCGTGGAC 60 NA Rattus norvegicus 81 Sf3a3 ENSRNOG00000007629 ENSRNOT00000087416 3 1 3 80 5 142702814 142702834 TATCATGAGGAGAAAGAACGG 57 142702876 142703517 GACCTCCATGTATCTCGTG 57 NA Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000079722 3 1 6 80 1 282643688 282643707 ATCTATACACCAGCCCATGC 60 282672492 282681788 TCCTATAACCAGTGCACCAC 60 NA Rattus norvegicus 81 Ubfd1 ENSRNOG00000018243 ENSRNOT00000025072 1 1 2 80 1 192034365 192036720 GACTACCACATGATGGCGT 60 192036761 192036782 CACATATTGAGTTGGAACCCAG 59 NA Rattus norvegicus 81 Kcnk3 ENSRNOG00000009790 ENSRNOT00000013107,ENSRNOT00000068412 2 2 2 101 6 27155933 27189842 TCACCACAATCGGCTATGG 60 27155850 27155868 ACATGACTAGTGTGAGCGG 60 NA Rattus norvegicus 81 Pak7 ENSRNOG00000005509 ENSRNOT00000084829,ENSRNOT00000007410 1 2 2 80 3 129077724 129077742 CATCCTCAAGGACACTCGT 59 129062166 129077683 ATAATCCACCTTTGGAATGCAC 59 NA Rattus norvegicus 81 Sept8 ENSRNOG00000007462 ENSRNOT00000065229,ENSRNOT00000083162 2 2 3 80 10 38891202 38891221 CGTTCATCTCAAACTGACCA 58 38891263 38891604 ACTATGGGCCTGTAACTGTC 59 NA Rattus norvegicus 81 Acbd3 ENSRNOG00000003185 ENSRNOT00000085390,ENSRNOT00000004293 2 2 2 94 13 99024233 99025858 AAATGGACCCAAAGACTCTC 58 99025915 99025933 CATCCTGCCGAATCTTCTC 58 NA Rattus norvegicus 81 Acbd3 ENSRNOG00000003185 ENSRNOT00000085390,ENSRNOT00000004293 3 2 2 106 13 99024233 99025858 AAATGGACCCAAAGACTCTC 58 99025927 99025945 TCACAGAATCTGCATCCTG 57 NA Rattus norvegicus 81 Nedd9 ENSRNOG00000014548 ENSRNOT00000078310,ENSRNOT00000067374,ENSRNOT00000090794 2 3 3 83 17 23175161 23177433 GAGCATCATCAGCTGAGTC 58 23177478 23177498 GGGTTTCCATTTGGAAATGTC 58 NA Rattus norvegicus 81 RGD1307155 ENSRNOG00000021615 ENSRNOT00000037381 3 1 2 149 10 15242550 15242569 GCCATCAATGGGAAGATCTC 59 15242779 15242868 CATGTCCACCATCCTTTCC 58 NA Rattus norvegicus 81 Katnal1 ENSRNOG00000047618 ENSRNOT00000077328,ENSRNOT00000078798,ENSRNOT00000072801 3 3 3 85 12 7464298 7464316 CTGTGTCTTGTCGAGACGA 60 7464365 7478923 GATTTGAGGTGGTGCTCTG 59 NA Rattus norvegicus 81 Katnal1 ENSRNOG00000047618 ENSRNOT00000077328,ENSRNOT00000078798,ENSRNOT00000072801 1 3 3 85 12 7504850 7504868 CTGTGTCTTGTCGAGACGA 60 7504917 7519473 GATTTGAGGTGGTGCTCTG 59 NA Rattus norvegicus 81 Myo9b ENSRNOG00000016256 ENSRNOT00000087576,ENSRNOT00000086105 3 2 5 87 16 19728868 19728886 GAGGAGCTGGATGTTAACG 58 19729171 19730712 TTTGGTTATGCAAATCGCTC 58 NA Rattus norvegicus 81 Plcxd2 ENSRNOG00000042289 ENSRNOT00000038207,ENSRNOT00000085754 3 2 2 80 11 57247457 57254071 CTAGTTCACAGGAATCTCCCT 59 57254112 57254131 TGTGATGATGTTGACACCCA 60 NA Rattus norvegicus 81 Olr1159 ENSRNOG00000049191 ENSRNOT00000068066 1 1 1 60 8 19972850 19972868 GACCCTGAACTACAACCCA 59 19972889 19972910 GTACAGTGAGCAGGTATATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1159 ENSRNOG00000049191 ENSRNOT00000068066 2 1 1 60 8 19973118 19973141 GTATGGATAGTCTACTACTGGCTG 60 19973159 19973178 GGATGACAAATTGCTACCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snapc1 ENSRNOG00000009296 ENSRNOT00000012361 3 1 1 81 6 96884105 96884126 ACTAAGAGAAAGAGAACCAGAG 57 96884168 96891219 TTGGAACATCACCTTTGCT 58 NA Rattus norvegicus 81 Eif3e ENSRNOG00000027690 ENSRNOT00000038340 2 1 1 80 13 100145537 100149433 CAACCACAGTACCTTAATGCA 59 100149474 100149493 TTTGTTGGTTATGACGGCAG 59 NA Rattus norvegicus 81 AABR07067765.1 ENSRNOG00000054379 ENSRNOT00000091519 1 1 2 89 9 61974724 61974742 AGGATGTTGTCAATTGCCC 58 61972834 61974671 GATTTGTTGTTTGCGTCGC 59 NA Rattus norvegicus 81 LOC690114 ENSRNOG00000027370 ENSRNOT00000028923 1 1 1 76 1 94760651 94760669 CCAGACACCAGTCTTCTGG 60 94759391 94759409 AACAGACAGAGTGTCTGGC 60 NA DesignNoJunction Rattus norvegicus 81 Adgrg2 ENSRNOG00000032472 ENSRNOT00000058834 2 1 3 120 X 36969076 36974123 TGTTGTCACCATCTGATGCT 60 36964783 36964807 CAGATATTTCTCTGGGATTTGACTC 60 NA Rattus norvegicus 81 AABR07006536.1 ENSRNOG00000048390 ENSRNOT00000070922 3 1 1 64 1 238834530 238834551 ACTATGATACTGGAGACATGGT 58 238834257 238834275 AATGCTGCAGTTCTTGGAC 59 NA DesignNoJunction Rattus norvegicus 81 Sncaip ENSRNOG00000018254 ENSRNOT00000082760,ENSRNOT00000025119 2 2 2 80 18 47842790 47850110 GCCATCAAGAATGGTCAGC 59 47850153 47850172 CTTGGAACAACTCAGTTCCG 59 NA Rattus norvegicus 81 Cd300lf ENSRNOG00000021424 ENSRNOT00000064284 2 1 2 80 10 103679338 103679357 TGTGGAATTACAAAGGCTGG 59 103673812 103679297 ACCACTGTCATACCTCTTACC 59 NA Rattus norvegicus 81 Dpf2 ENSRNOG00000020892 ENSRNOT00000028363 1 1 2 87 1 221260956 221260974 AGTAAGGGTGTGAGCAGTG 59 221259407 221260905 TTCCACAAATGTCACAGGC 59 NA Rattus norvegicus 81 Slc37a4 ENSRNOG00000011361 ENSRNOT00000089763 2 1 2 80 8 48721812 48722116 TACAGAGCACGAGATCTGG 59 48722160 48722178 ACTCCAAACAAGGCAATGG 59 NA Rattus norvegicus 81 P2rx3 ENSRNOG00000008552 ENSRNOT00000033427,ENSRNOT00000088815 3 2 3 111 3 72433271 72433289 GTGTCGGATTATGTGACCC 58 72432623 72432840 ACTTCTCTTCATTCTCTGGAC 57 NA Rattus norvegicus 81 Tmem144 ENSRNOG00000010081 ENSRNOT00000013499,ENSRNOT00000078610 3 2 2 80 2 178609366 178612314 CTGGTGATGGGATGTTCCT 59 178609304 178609325 AGTGTAGAATCAAGTTGACCAC 58 NA Rattus norvegicus 81 Mcpt4 ENSRNOG00000024785 ENSRNOT00000089559,ENSRNOT00000027918 1 2 4 80 15 34752193 34752211 CATGTGACCTTCTGTGGTG 59 34752254 34752847 AGTGATTTCCCTTCCATGAC 58 NA Rattus norvegicus 81 Ece1 ENSRNOG00000014241 ENSRNOT00000067616,ENSRNOT00000077742 2 2 2 102 5 156289544 156290096 AATGTGATCCAGGTGGACC 59 156291407 156291428 TGTAGTTCAGATAGCCAGTCAG 59 NA Rattus norvegicus 81 Ece1 ENSRNOG00000014241 ENSRNOT00000067616,ENSRNOT00000077742 3 2 2 103 5 156289544 156290096 AATGTGATCCAGGTGGACC 59 156291407 156291429 ATGTAGTTCAGATAGCCAGTCAG 60 NA Rattus norvegicus 81 Zp3r ENSRNOG00000025862 ENSRNOT00000035577 1 1 2 80 13 47305414 47305586 ATGTGTAATTGCCACATGTGAG 60 47305355 47305376 TATGTGTACAGGTCTTCCTCTC 59 NA Rattus norvegicus 81 Ceacam1 ENSRNOG00000020578 ENSRNOT00000051892,ENSRNOT00000090629 3 2 4 80 1 82338649 82338670 TATCAGTGTGAGATCTCCAACC 59 82332690 82338611 TTGTGTTGGATCAGGTATTACG 59 NA Rattus norvegicus 81 Hr ENSRNOG00000011427 ENSRNOT00000082639,ENSRNOT00000015716 3 2 2 80 15 52257009 52259309 GCTTTCTCCAGATGGTGTG 59 52259352 52259371 ACCCTGAATCCAAGTAGCAG 60 NA Rattus norvegicus 81 Gk ENSRNOG00000034116 ENSRNOT00000064340,ENSRNOT00000051249,ENSRNOT00000087919 3 3 4 86 X 54259441 54262386 CTATGGCCTAATGAAAGCTGG 59 54258975 54258993 ATTTGTCCCACCAAAGCAG 59 NA Rattus norvegicus 81 Gk ENSRNOG00000034116 ENSRNOT00000064340,ENSRNOT00000051249 1 2 4 82 X 54235604 54235622 AATCCGTTACTCCACCTGG 59 54229835 54235559 ATGGGATACCACTTTCAGGA 58 NA Rattus norvegicus 81 LOC499541 ENSRNOG00000030171 ENSRNOT00000049559,ENSRNOT00000078544 2 2 2 72 2 61692290 61692310 GAAGGAGAACAACCAAATCTG 57 61691854 61691872 AGATCCTGAGAGGGATGAC 58 NA DesignNoJunction Rattus norvegicus 81 Slc5a7 ENSRNOG00000010597 ENSRNOT00000014548,ENSRNOT00000078055 3 2 2 85 9 5324425 5329140 TTTACCATGACAGCCACCT 59 5324358 5324376 CAAGCTAGACCACAACCTG 58 NA Rattus norvegicus 81 P2rx2 ENSRNOG00000037456 ENSRNOT00000085661,ENSRNOT00000056693 3 2 5 81 12 52397970 52398133 CTTTACTTCGTGTGGTACGTC 59 52398176 52398194 TGGTGATGATGGAGCTCTC 59 NA Rattus norvegicus 81 Pfkfb2 ENSRNOG00000004162 ENSRNOT00000005729,ENSRNOT00000050354,ENSRNOT00000050859,ENSRNOT00000067445 3 4 5 84 13 47422067 47422658 AAGCCAACTCACAACTTCC 58 47422001 47422019 TTGTGTTCGAACTGGACAG 58 NA Rattus norvegicus 81 Pfkfb2 ENSRNOG00000004162 ENSRNOT00000037679,ENSRNOT00000005729,ENSRNOT00000050354,ENSRNOT00000050859 1 4 5 80 13 47426323 47429297 ACTATGATAAGGACCTCTCGT 58 47426263 47426282 GGATGTAGTCCTGAACTCTG 57 NA Rattus norvegicus 81 Cd93 ENSRNOG00000024799 ENSRNOT00000034256 1 1 2 95 3 142781960 142781978 ATTTGGGCACATACCTCCC 60 142781881 142781899 ACAGAAGTAGCTTCTGCCC 59 NA DesignNoJunction Rattus norvegicus 81 Rtdr1 ENSRNOG00000001315 ENSRNOT00000085583 2 1 2 103 20 14649403 14651260 CTCATTGCCATCAGCATCC 59 14651326 14651345 TTAACCTCTTCGTCGGTGTC 60 NA Rattus norvegicus 81 Atp6v0a1 ENSRNOG00000036814 ENSRNOT00000087076 1 1 2 80 10 88952724 88952745 GCTGAAATTATTCAGCATGACC 59 88953718 88959739 AAAGTCAAACACTTCGTCCT 58 NA Rattus norvegicus 81 Ogfr ENSRNOG00000009355 ENSRNOT00000012611,ENSRNOT00000086541 1 2 2 80 3 176093764 176093783 ATGATACGACCGATGAGGAC 59 176093826 176095188 TCATCCTGGACTGGAACAG 59 NA Rattus norvegicus 81 Ogfr ENSRNOG00000009355 ENSRNOT00000012611,ENSRNOT00000086541 2 2 2 80 3 175930606 175930625 GATGATACGACCGATGAGGA 59 175930668 176095187 CATCCTGGACTGGAACAGG 60 NA Rattus norvegicus 81 Epb41l2 ENSRNOG00000012346 ENSRNOT00000017322,ENSRNOT00000017412 2 2 5 81 1 20916153 20916171 TACTACAGTCCAGGATGGC 58 20903361 20916109 ATGTGAACTCTTTCCCTCAG 57 NA Rattus norvegicus 81 Tnrc18 ENSRNOG00000024482 ENSRNOT00000038203 2 1 2 94 12 13904536 13904555 TCCTCCTCATCTTCCTCCTC 60 13904612 13905379 GAAGAGTCCTCGTCTGTGG 60 NA Rattus norvegicus 81 Lpin1 ENSRNOG00000004377 ENSRNOT00000005863 3 1 2 80 6 41838896 41838914 GACGAGGACATGTTTCCCA 60 41835598 41838853 ATCATTAGGAAGAGCTCTGCT 59 NA Rattus norvegicus 81 Pdk3 ENSRNOG00000012513 ENSRNOT00000076652,ENSRNOT00000017370 2 2 2 80 X 62840330 62840348 CCTGAAGCTGATGACTGGA 59 62836931 62840289 CTTGATCTTGTCCTGTTTAGCC 59 NA Rattus norvegicus 81 Zdhhc21 ENSRNOG00000010484 ENSRNOT00000077429,ENSRNOT00000013950 2 2 2 80 5 100927222 100935913 GTGAAGAAATATCGCGGCC 60 100927160 100927178 ACCACAGGATCTTCCAACG 60 NA Rattus norvegicus 81 LOC100360638 ENSRNOG00000018936 ENSRNOT00000051665 1 1 2 80 1 84891894 84891914 TACTAGAGCAGGAGAAAGAGC 59 84882120 84891854 CATAACCTGTCTCCAACTCTG 58 NA Rattus norvegicus 81 LOC100911440 ENSRNOG00000049944 ENSRNOT00000077776,ENSRNOT00000025240 3 2 2 88 1 214414240 214414506 ATGTATGCCAGCATGTCTG 58 214413377 214413395 GTCAGGTTTACTGCTGCTC 59 NA Rattus norvegicus 81 LOC501406 ENSRNOG00000046353 ENSRNOT00000070999,ENSRNOT00000071758 2 2 2 81 1 38585743 38585761 CTGGTCACATTTCTGGAGC 59 38583897 38585701 GTTTCAATCCTAGATGGATGGC 59 NA Rattus norvegicus 81 LOC501406 ENSRNOG00000046353 ENSRNOT00000070999,ENSRNOT00000071758 3 2 2 81 1 38585742 38585760 TGGTCACATTTCTGGAGCA 59 38583896 38585700 GGTTTCAATCCTAGATGGATGG 59 NA Rattus norvegicus 81 Strn3 ENSRNOG00000060335 ENSRNOT00000077578 3 1 2 80 6 72418166 72418184 AGTGACTGCAGAAGATGGT 59 72412696 72418123 GAGAGGTCATCCTTATCCCA 58 NA Rattus norvegicus 81 Ept1 ENSRNOG00000059295 ENSRNOT00000085937,ENSRNOT00000081278 1 2 2 80 6 27487274 27487294 GCCATGGGATGACATTAGC 59 27485776 27485794 TCATACCAGGCCTCAACTC 59 NA Rattus norvegicus 81 Kdm4b ENSRNOG00000049221 ENSRNOT00000089374,ENSRNOT00000071199,ENSRNOT00000091450 1 3 3 80 9 10657659 10658708 ATCTACCAGGTAGAGTTTGAGG 59 10657600 10657619 GGGCAATTCCTCTTCAAGTG 59 NA Rattus norvegicus 81 Cxcr4 ENSRNOG00000003866 ENSRNOT00000005143,ENSRNOT00000091514 1 2 2 80 13 45316571 45318789 GCATTGCCATGGAAATATACAC 59 45316512 45316530 AGGGTTCCTTGTTGGAGTC 59 NA InUTR Rattus norvegicus 81 Gsap ENSRNOG00000028801 ENSRNOT00000083964 3 1 2 80 4 10466141 10466159 AAAGACCTTCACCGTAGCT 59 10460325 10466098 ACAAAGTAGCCAAGGTTGAG 58 NA Rattus norvegicus 81 Etnk2 ENSRNOG00000028368 ENSRNOT00000076924,ENSRNOT00000076072 3 2 3 80 13 50485664 50488199 GTTTGCAGGTGTGAATGAG 57 50485602 50485621 TCCAGATAATAGCGTAGCCA 58 NA Rattus norvegicus 81 Dazl ENSRNOG00000023474 ENSRNOT00000077532 1 1 2 82 9 12643230 12643918 TACCTCCGGCTTATACAACTG 59 12643962 12643980 AACTGAGCATTCATTGGGC 59 NA Rattus norvegicus 81 Zfand4 ENSRNOG00000011791 ENSRNOT00000083563,ENSRNOT00000015742 1 2 2 80 4 148233573 148247007 TCTTTAAGTGGTGGCTCTG 57 148247051 148247069 GATTTGTTGCCCAGAAGGA 58 NA Rattus norvegicus 81 Zfand4 ENSRNOG00000011791 ENSRNOT00000015742 1 1 2 119 4 148258392 148268216 GAGAATAGGAGAAAGTACTCACCA 60 148268294 148268312 TCAAAGCTAGTGGCCAGTC 60 NA Rattus norvegicus 81 Clvs1 ENSRNOG00000006919 ENSRNOT00000087182 2 1 2 87 5 22392772 22392792 CACTTGGAAGAGATTTGCCA 59 22392842 22392860 TTCATTCAGTTCCAGGCGA 59 NA Rattus norvegicus 81 Plekha6 ENSRNOG00000002907 ENSRNOT00000076153 3 1 3 170 13 50559945 50559963 CTGTTTCCAGTGCAATGTG 58 50559141 50559159 TGTAGCTTCACAGCATTGG 58 NA DesignNoJunction Rattus norvegicus 81 Cacna1g ENSRNOG00000060528 ENSRNOT00000081307,ENSRNOT00000092024 2 2 2 80 10 82137032 82137149 GAGACCTGGAGTGTGATGAG 60 82136971 82136991 GAAAGGCCATACCAAAGTTCC 60 NA Rattus norvegicus 81 Cd244 ENSRNOG00000004698 ENSRNOT00000006266 1 1 2 81 13 89994544 89995435 GTGTATGAAGAGATTGGAAAGC 58 89995477 89995495 CTTCGAAGTTCTCCAGCTC 58 NA Rattus norvegicus 81 Wdr74 ENSRNOG00000042878 ENSRNOT00000066823 1 1 2 80 1 224937973 224938440 TAGAGCATAAGGATGAGCCC 59 224938481 224938501 CCCAAAGTTCATCTGTCTCTG 59 NA Rattus norvegicus 81 Phyhipl ENSRNOG00000000274 ENSRNOT00000000299,ENSRNOT00000058151 1 2 2 86 20 19352584 19357846 GACTATGTTAGAGATCACTATGGG 58 19357891 19357909 TTTCCCACTGATGGGAGAG 59 NA Rattus norvegicus 81 Mplkip ENSRNOG00000013806 ENSRNOT00000018458,ENSRNOT00000080628 1 2 2 62 17 49956841 49956859 AGCATCAGTTCGGCTACTC 60 49955759 49956815 ATGTCCTTGGAGAACCCTG 59 NA DesignRelaxed Rattus norvegicus 81 Hdac3 ENSRNOG00000019618 ENSRNOT00000084735,ENSRNOT00000060417,ENSRNOT00000078667 3 3 3 80 18 31077930 31077948 ATATCCCTCTCCTGGTGCT 60 31077771 31077890 GCAGAGATGTTTCATATGTCCAG 60 NA Rattus norvegicus 81 Tnfrsf10b ENSRNOG00000038483 ENSRNOT00000077758 1 1 2 80 15 51452864 51452883 TGTTTGTAGCTGTCATCTGG 58 51452926 51454633 GTTCACAGCCTGGATAGAC 58 NA Rattus norvegicus 81 Tnfrsf10b ENSRNOG00000038483 ENSRNOT00000077758 3 1 2 81 15 51452864 51452884 TGTTTGTAGCTGTCATCTGGA 60 51452926 51454634 TGTTCACAGCCTGGATAGAC 60 NA Rattus norvegicus 81 Trim26 ENSRNOG00000032930 ENSRNOT00000079110 1 1 3 80 20 2206406 2207997 GTAGCCAAGACACCAAGGA 59 2205930 2205948 TAACCATGTGAGGGATGGC 60 NA Rattus norvegicus 81 Vom2r3 ENSRNOG00000046319 ENSRNOT00000044187,ENSRNOT00000072186 1 2 2 80 1 402125 403351 GGAGAAACATTGGTTCCCT 57 403394 403413 GGCTGTTTGTTTCTGATGAC 58 NA Rattus norvegicus 81 Impad1 ENSRNOG00000027079 ENSRNOT00000033151 3 1 2 80 5 17642034 17642053 AGTTATACTGGGTCTGACGG 59 17639000 17641994 TGAACTTAGCATCAAAGCTTGG 60 NA Rattus norvegicus 81 Commd9 ENSRNOG00000004755 ENSRNOT00000081984,ENSRNOT00000006628 2 2 2 81 3 91476413 91477406 AGATGAAGATCCAGGAGGAC 58 91477450 91477468 GTTTCTTTGCTCAGCTCCA 58 NA Rattus norvegicus 81 Xpo6 ENSRNOG00000016722 ENSRNOT00000022502 3 1 3 80 1 197522726 197522747 ATTAGCTGAATACTTCACTGGG 58 197518520 197522685 ACTTTGACCAACCTCTCCA 59 NA Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000075971,ENSRNOT00000073253 3 2 5 95 5 101935783 102010610 TTTACAATCAATGGGCTCCAG 59 102010667 102010685 TGCAATGGAAGAAAGTCCC 58 NA Rattus norvegicus 81 Asb10 ENSRNOG00000024885 ENSRNOT00000037446 1 1 2 80 4 7159302 7159324 CTGATTCTACCTTTGATACCAGC 59 7159364 7159523 GAGACCAGAGTCTCAGAGC 59 NA Rattus norvegicus 81 Nt5c1b ENSRNOG00000004296 ENSRNOT00000090438 3 1 2 81 6 36091139 36091474 GTCTGAGCACTCAGATGAG 57 36091518 36091537 CTACAGAAGTGGTGATACCG 58 NA Rattus norvegicus 81 Iqch ENSRNOG00000008353 ENSRNOT00000080588,ENSRNOT00000011109 1 2 2 80 8 68444705 68444724 AGGAGTCTCAACAGAAACAG 57 68434623 68442843 TAATCCTCGTGCTCTTCCT 58 NA Rattus norvegicus 81 Plekho1 ENSRNOG00000021170 ENSRNOT00000028747,ENSRNOT00000079621 3 2 2 133 2 198114403 198114966 CATCCTGGATGAGGTCACC 60 198112893 198112911 CTGAGGTAGAGGTGGAAGC 59 NA Rattus norvegicus 81 Scyl2 ENSRNOG00000024955 ENSRNOT00000002638,ENSRNOT00000082016 1 2 2 80 7 30318016 30319059 CCTTCTGAACAAGAGCCCA 60 30317954 30317975 GTACTCAGGATTTGGAAGACAC 59 NA Rattus norvegicus 81 Cul2 ENSRNOG00000015292 ENSRNOT00000066805 3 1 2 82 17 56960386 56962184 GAGTGCTTTAGATAAGCTTGC 58 56960324 56960343 CCTCTACTTCATTCTCCGTC 57 NA Rattus norvegicus 81 Srpk2 ENSRNOG00000010601 ENSRNOT00000080811 3 1 2 82 4 8178031 8178049 GAGCTGCTAGGCAGTATCC 60 8178095 8178471 GCTATGTGATCTCTGCGGT 60 NA Rattus norvegicus 81 Lrrc56 ENSRNOG00000016697 ENSRNOT00000022867 3 1 2 80 1 214192882 214193384 CTAACAAGGCACCTCAGGA 59 214193424 214193446 GTACCTCATCTAGGATATGGAGC 60 NA Rattus norvegicus 81 Lrrc56 ENSRNOG00000016697 ENSRNOT00000091150 3 1 2 80 1 214193388 214193483 CAACTACAGAGCAGAGAAGCT 60 214193525 214193543 AGAATGTCAAGCACGTTGC 60 NA Rattus norvegicus 81 Csf1r ENSRNOG00000018414 ENSRNOT00000079360,ENSRNOT00000049357 2 2 3 80 18 56446295 56446316 GCCTGTATATCTGTCATGTCTC 58 56446356 56451297 CTGATATTTCGGCTTCTGCT 58 NA Rattus norvegicus 81 Slc22a22 ENSRNOG00000004958 ENSRNOT00000078009,ENSRNOT00000006596 1 2 2 80 7 97042784 97047404 AGTACCACTCAGGTCAACTC 59 97042723 97042742 ACAAGTGTTAGTGCAGACAG 58 NA Rattus norvegicus 81 Nsmaf ENSRNOG00000010234 ENSRNOT00000089666,ENSRNOT00000014289 3 2 2 80 5 19541775 19542047 CAGCCCATTCTTAAGATTCCT 58 19541715 19541734 TGCAAAGTGTTTATTGGCTC 57 NA Rattus norvegicus 81 Entpd4 ENSRNOG00000016321 ENSRNOT00000064428 2 1 2 90 15 51235203 51235221 AATCCTCATGACCTGCTGG 60 51235275 51245813 TTTGCTGGATCTCATCGGG 60 NA Rattus norvegicus 81 Myt1l ENSRNOG00000004269 ENSRNOT00000044310 1 1 2 80 6 48809749 48857855 TTCTCATCGAAGCCTTTCC 58 48857898 48857917 TCTTCCTTGTCTTCTTTGCT 57 NA Rattus norvegicus 81 Nlrc3 ENSRNOG00000024210 ENSRNOT00000036189 3 1 2 80 10 11828790 11828810 GATTGGTAACAAAGGAGCCAG 59 11828850 11830286 TTACTCCGAAGGTCTAGTGTG 59 NA Rattus norvegicus 81 Mrps14 ENSRNOG00000002569 ENSRNOT00000076539 3 1 5 138 13 77940590 77940608 ACCCTGACACCTGTAATGC 60 77940710 77942290 ATGACAGAGGAACTGCCTC 59 NA Rattus norvegicus 81 Lppr1 ENSRNOG00000007575 ENSRNOT00000088716,ENSRNOT00000009987 3 2 2 81 5 67900755 67985208 TTGTTGAGCTTGTCATCATGG 59 67900694 67900713 TGGATATGCACCTGAAAGGT 59 NA Rattus norvegicus 81 Bpnt1 ENSRNOG00000002378 ENSRNOT00000088921 3 1 2 86 13 103285274 103287722 AATGAAGCAAAGGCAGGAC 59 103287771 103287790 TTTCAGCTGAAACCCAAAGG 59 NA Rattus norvegicus 81 Tbc1d4 ENSRNOG00000009431 ENSRNOT00000064942 1 1 2 80 15 85946575 85946596 GTGGAAGAAAGCTATACACCAG 59 85943235 85946534 TCATCTCTTCTCGCTTCCA 58 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000007070 1 1 11 80 6 99098381 99098399 CAGGAATCACTGACAGAGG 57 99098441 99098789 AGCTTCTAAGATCTCGTAGGT 58 NA Rattus norvegicus 81 Tnni1 ENSRNOG00000009073 ENSRNOT00000076054,ENSRNOT00000076299 3 2 3 191 13 52628706 52631324 GTTGAGAGGAAATCTAAGATCACTG 59 52631938 52633866 TCGGCATAAGTCCTGAAGG 59 NA Rattus norvegicus 81 Tmbim6 ENSRNOG00000055579 ENSRNOT00000091050,ENSRNOT00000084674,ENSRNOT00000088176 1 3 3 80 7 141065930 141065949 ATGATCTTCACCTGCTTCAG 58 141065991 141066206 TGACATCAAGATACCTCCCA 58 NA Rattus norvegicus 81 Abcc8 ENSRNOG00000021130 ENSRNOT00000038798 2 1 2 90 1 102115703 102115722 TCCTAGAGTACACCGACTCC 60 102114502 102115650 AGGTAGTTGGAGACCATGC 59 NA Rattus norvegicus 81 Phldb1 ENSRNOG00000026985 ENSRNOT00000088034,ENSRNOT00000047303 1 2 3 80 8 49037172 49037190 ACCTCATCTTGTGAGCCTG 59 49036258 49037128 ATCACTGTCCTCCCTTCCT 60 NA Rattus norvegicus 81 Mxd4 ENSRNOG00000015033 ENSRNOT00000077060 1 1 2 133 14 81819838 81822916 CGAACAACAGGTCTTCACAC 60 81828396 81828414 CTTCAGGAGGCTCAGAGTG 60 NA Rattus norvegicus 81 Psg19 ENSRNOG00000038101 ENSRNOT00000089234 1 1 5 81 1 79704027 79704045 TTCTACACCCTACGCACTC 59 79699342 79703982 GTGTCACAGGCTTGTTCAC 59 NA Rattus norvegicus 81 Taf9 ENSRNOG00000051258 ENSRNOT00000076484 3 1 5 176 2 30664766 30666571 TGTCAATCTGGTACACCAGG 60 30667441 30667460 CATCATCTGTGCGTCTTTCG 60 NA InUTR Rattus norvegicus 81 Ncstn ENSRNOG00000005355 ENSRNOT00000008150 2 1 2 81 13 90461169 90465657 CTGCCAGTCTTCAATTAGTGG 59 90461108 90461128 ATCCGTCAATACCCATTTCAG 58 NA Rattus norvegicus 81 Fbxw11 ENSRNOG00000004395 ENSRNOT00000064079 1 1 2 80 10 17621127 17621145 AACAGACCTACAGATGGCC 59 17621187 17630194 ATCCCAGATCTCTATGTCCTG 58 NA Rattus norvegicus 81 Synj2 ENSRNOG00000017114 ENSRNOT00000066798,ENSRNOT00000067661 2 2 3 82 1 46929512 46931334 CAGGAAAGCCCATGTTATCAG 59 46931377 46931396 CTCAAGGTTCATTTCCTGGG 59 NA Rattus norvegicus 81 Tmem231 ENSRNOG00000021517 ENSRNOT00000031243,ENSRNOT00000088297 2 2 2 80 19 44143513 44143531 ATGTGAATGGTGACCTGAG 57 44141134 44143470 TCACCGATACGTTGTATCTG 57 NA Rattus norvegicus 81 LOC691920 ENSRNOG00000010050 ENSRNOT00000048141 3 1 2 80 3 112657763 112657901 GGCTGGAACTATCAGGGTG 60 112657944 112657963 ACCCAAGAATCCATGTCGAG 60 NA Rattus norvegicus 81 Tmem134 ENSRNOG00000022153 ENSRNOT00000030340 1 1 2 80 1 219375871 219378885 TTGGGACTAGTGCTTATCCTG 59 219379075 219379093 CACAAAGAAGATGGCGCTG 60 NA Rattus norvegicus 81 Tmem134 ENSRNOG00000022153 ENSRNOT00000030340 2 1 2 81 1 219375809 219375827 CCCAACATCCTTTGATCCA 57 219375872 219378884 AGGATAAGCACTAGTCCCA 57 NA Rattus norvegicus 81 Smg1 ENSRNOG00000047386 ENSRNOT00000072266,ENSRNOT00000089399 3 2 2 80 1 187820157 187821321 TTATACACAGCAGGCCAGTC 60 187820096 187820114 AGCTTTCGCAGATTTGCAG 60 NA Rattus norvegicus 81 Hnrnpdl ENSRNOG00000002270 ENSRNOT00000079767,ENSRNOT00000003106 2 2 2 80 14 11201123 11201142 TCACATACACAGACGAAGAG 57 11201184 11201308 TGATTTCACACTTCCCAGAG 58 NA Rattus norvegicus 81 Fap ENSRNOG00000005679 ENSRNOT00000008148 2 1 2 80 3 48469768 48469786 TCAACTGTGATGGCAAGAG 58 48469412 48469725 GTGCACATTATCATCTGCTG 57 NA Rattus norvegicus 81 Bnc2 ENSRNOG00000006553 ENSRNOT00000086635 3 1 2 81 5 102641811 102680622 GAATGTCCCAACAGGTTCC 59 102641748 102641766 TGGTCTATCTCCTCCAGGT 59 NA Rattus norvegicus 81 Amacr ENSRNOG00000018662 ENSRNOT00000025323 1 1 2 127 2 60952536 60956196 ATTGATGCGAACATGGTGG 59 60956287 60956305 GTTGTGTAGAAAGGTGCCC 59 NA Rattus norvegicus 81 Amacr ENSRNOG00000018662 ENSRNOT00000025323 2 1 2 128 2 60952536 60956196 ATTGATGCGAACATGGTGG 59 60956288 60956306 GGTTGTGTAGAAAGGTGCC 59 NA Rattus norvegicus 81 Amacr ENSRNOG00000018662 ENSRNOT00000040701 1 1 2 91 2 60953049 60953067 GCTGCCAAGTAATGATCCT 58 60953119 60953302 GAATCCTACCTTCCTTAGTGTC 58 NA Rattus norvegicus 81 Trim29 ENSRNOG00000021771 ENSRNOT00000026170 2 1 2 80 8 47692613 47692632 AGTACTCGTCCACTGTTCAG 59 47692675 47695439 AGGGATAGCCTTTCAGGGA 60 NA Rattus norvegicus 81 Dtnb ENSRNOG00000011914 ENSRNOT00000060810 2 1 2 141 6 28144216 28168874 ATGAAGCTGCTAAAGGCTC 58 28168979 28168997 CTCCACTCAGTGAATCCTG 57 NA Rattus norvegicus 81 Dtnb ENSRNOG00000011914 ENSRNOT00000077830 1 1 2 97 6 28144142 28144160 AAGATGAGCTGGAGCAGAG 59 28144220 28150831 TTCTTCCTCCTTTAGCAGCT 59 NA Rattus norvegicus 81 Nosip ENSRNOG00000020543 ENSRNOT00000079189,ENSRNOT00000027882 2 2 2 80 1 101071337 101071355 GAAGGAGTCAGCCATTGTG 59 101071399 101071498 TGTTCACCATCTGTGTTGG 58 NA Rattus norvegicus 81 Usp2 ENSRNOG00000006663 ENSRNOT00000036051 1 1 2 156 8 48422040 48422058 GTACCTCCTACACCGTGAC 59 48422176 48426006 GCACTCTTTGAATTCTTGGCT 60 NA Rattus norvegicus 81 Tmem80 ENSRNOG00000018061 ENSRNOT00000032904,ENSRNOT00000078754 2 2 2 88 1 214322171 214322839 TTCAAGGTGCTCTCGTCAG 60 214322891 214322909 ATCAGGAGTGTGGCTAGGA 60 NA InUTR Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000085883,ENSRNOT00000081979,ENSRNOT00000085137,ENSRNOT00000049746 2 5 7 80 15 5509800 5509819 GCTAGTTCAGAAGGAGAGGG 59 5466199 5509759 CGAATAAACCAAGACAGGAGG 59 NA Rattus norvegicus 81 Pitx2 ENSRNOG00000010681 ENSRNOT00000044232 2 1 2 101 2 233606680 233617123 GCAATTAGAGAAAGATAAGGGC 57 233617185 233617203 GTAAAGTGAGTCCTCTGCC 58 NA Rattus norvegicus 81 Lrch3 ENSRNOG00000001774 ENSRNOT00000073865,ENSRNOT00000063883 2 2 3 97 11 71027570 71030013 TATGACAGACACAGGTCGC 60 71027491 71027509 ATCTCAGCTCTTCTTCCCG 59 NA Rattus norvegicus 81 Slc25a3 ENSRNOG00000008289 ENSRNOT00000011494 1 1 2 81 7 31822066 31823608 CGTGGAAGAGTACAGTTGTG 59 31822004 31822022 CAGCCCACAACTTAAGACC 59 NA Rattus norvegicus 81 Napg ENSRNOG00000018914 ENSRNOT00000077726 2 1 2 83 18 58330804 58331390 ATGCTGCCAAAGCTTATGAG 59 58333456 58333474 CTTTCTCGATCAGCTGCAC 59 NA Rattus norvegicus 81 Lipa ENSRNOG00000019077 ENSRNOT00000078279,ENSRNOT00000025845 3 2 2 80 1 252833127 252845843 TTGATAAAGGTCCCAAACCAG 58 252833067 252833086 TGTCAATGTTTGTGACCCAG 59 NA Rattus norvegicus 81 Comp ENSRNOG00000048472 ENSRNOT00000083281,ENSRNOT00000072536 1 2 2 80 16 20801211 20801229 CCTTCCAAACAGTTGTGCT 59 20801042 20801168 TCTCCATTCCCTGATTGAGC 60 NA Rattus norvegicus 81 Comp ENSRNOG00000048472 ENSRNOT00000072536 2 1 2 80 16 20806737 20806756 AGATGCTTCGAGAACTCCAG 60 20806257 20806694 TGATCTCCTTGACCTGCTG 59 NA Rattus norvegicus 81 Cenpn ENSRNOG00000011296 ENSRNOT00000042458 2 1 3 83 19 49475335 49475353 GTGCATTCATGCCAAACAG 58 49475400 49476062 TTGAATCCACAGCATAGCG 58 NA Rattus norvegicus 81 Vom2r62 ENSRNOG00000050572 ENSRNOT00000037646,ENSRNOT00000042215,ENSRNOT00000048430,ENSRNOT00000043007 3 4 4 81 12 19760583 19938339 GAGTGGAGCAACAGATTCC 58 19760520 19760538 GCTTTCCCTTCCTGAAGAG 58 NA Rattus norvegicus 81 Mtr ENSRNOG00000017593 ENSRNOT00000023974,ENSRNOT00000083172 2 2 2 80 17 66243017 66245073 TCTTACGATATGCCCAGACTC 59 66242957 66242976 CTTCAATCGAGCCATTCCTC 59 NA Rattus norvegicus 81 Cyfip2 ENSRNOG00000006557 ENSRNOT00000081280 1 1 2 80 10 31357911 31359499 AAGAGAACAAATCCAAGCCC 59 31357850 31357868 GAAGGACAGAATCACAGCC 58 NA Rattus norvegicus 81 LOC100911865 ENSRNOG00000036598 ENSRNOT00000078738,ENSRNOT00000091663,ENSRNOT00000072002,ENSRNOT00000073502,ENSRNOT00000018668 3 5 5 87 1 257590073 257592414 CTACATCTTTCAGAAGGGTGG 58 257592463 257592481 GTAACCAACGTCAGGTCTG 58 NA Rattus norvegicus 81 Cr2 ENSRNOG00000034164 ENSRNOT00000080616 3 1 2 81 13 113917074 113917094 GCAAATCTTCTAGTCAGTGTG 57 113915559 113917032 CAAGAAAGCTGTTCACAGAC 57 NA Rattus norvegicus 81 Etv1 ENSRNOG00000006867 ENSRNOT00000091263 3 1 2 80 6 58523803 58540100 CATATGATTCAGAAGTGCCTAGC 60 58540138 58540158 CTTCTGTTCTGCTTGGATGAG 59 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000075869,ENSRNOT00000090799 3 2 6 80 5 47931467 47933462 CTACTGAAACAGCCTATTCCAG 59 47933501 47933521 CTTGTCTCCAACTGAAATCCA 58 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000087524,ENSRNOT00000090936 1 2 8 155 20 1979901 1981042 AGGATTTCTTTGCAACGGC 60 1979764 1979782 AAGCTTGAGCTCGTAGTCC 60 NA InUTR Rattus norvegicus 81 Itpr1 ENSRNOG00000007104 ENSRNOT00000064025,ENSRNOT00000041130,ENSRNOT00000043646 1 3 5 91 4 140268538 140272582 CTTGGGCTTGGTTGATGAC 59 140272636 140362485 GCTTAAAGAGGCAGTCTCTG 58 NA Rattus norvegicus 81 Rab7l1 ENSRNOG00000049641 ENSRNOT00000073669 1 1 2 83 13 48649370 48649675 AATGAGGCCATGAGAGTCC 59 48649722 48649740 GTAGTTCCCTTGGGTGGAC 60 NA Rattus norvegicus 81 Nfyc ENSRNOG00000010735 ENSRNOT00000056651,ENSRNOT00000078741 3 2 2 80 5 139711370 139711390 TCCGAGTACAAGAACTACCAC 59 139708845 139711331 CTTCTGCACTGATCATCTTCAC 60 NA Rattus norvegicus 81 Amot ENSRNOG00000007345 ENSRNOT00000090918,ENSRNOT00000049482 2 2 2 80 X 116758230 116758248 CCGCATCCAGAAAGAAGAG 58 116757425 116758187 TGGAGGGTCTTAATCCTTCC 59 NA Rattus norvegicus 81 Zdhhc12 ENSRNOG00000015791 ENSRNOT00000050908 1 1 1 83 3 8657947 8657966 TCTATCTGGCTGTGTCACTC 59 8657523 8657541 CTGTCTGTTCCTCCTTCGG 60 NA DesignNoJunction Rattus norvegicus 81 Fam107b ENSRNOG00000014886 ENSRNOT00000079260 3 1 2 97 17 78497745 78499808 CTCACTATGTGCAAGACGG 58 78497666 78497686 ATCTTCTATGTAGTCCGGCTC 59 NA Rattus norvegicus 81 Zc3h12b ENSRNOG00000011508 ENSRNOT00000076903,ENSRNOT00000081354 2 2 3 83 X 65068707 65068727 AAGGCCATAAAGACATCACTG 58 65068770 65070959 TATCTTGATCTGTAATCGGCG 58 NA Rattus norvegicus 81 Qk ENSRNOG00000048297 ENSRNOT00000089149,ENSRNOT00000023290 1 2 4 112 1 50930321 50930341 TGAAGCTGGGTTAATCTACAC 58 50930412 50931121 GCATTTCAATCCACTCTAACAC 58 NA Rattus norvegicus 81 Qk ENSRNOG00000048297 ENSRNOT00000089149,ENSRNOT00000023290 1 2 4 112 1 51049431 51049451 TGAAGCTGGGTTAATCTACAC 58 51049522 51050231 GCATTTCAATCCACTCTAACAC 58 NA Rattus norvegicus 81 Plekhg5 ENSRNOG00000022694 ENSRNOT00000064841,ENSRNOT00000084487,ENSRNOT00000082586 3 3 3 80 5 169281698 169285300 GAAAGATAGCAAGATGGACGT 58 169285342 169285360 CTCTCCGCTTTCTTCACAG 58 NA Rattus norvegicus 81 Ptgr2 ENSRNOG00000038166 ENSRNOT00000059073 2 1 2 81 6 108024446 108026762 GAAGGAAAGCTAAAGATCAAGG 57 108029790 108029809 CTCCTGTCATCATGGATTGG 58 NA Rattus norvegicus 81 Hnrnpab ENSRNOG00000046272 ENSRNOT00000086193 3 1 2 84 10 37050002 37050286 GGCTACGACTACAGTCAGG 59 37049936 37049960 CTCAGTATGGCTTGTAGTTATTCTG 60 NA Rattus norvegicus 81 Rpn2 ENSRNOG00000007492 ENSRNOT00000091273 3 1 2 104 3 153441410 153441428 CTCAACATGTTCCAGACCC 58 153441493 153441611 GTGAATCATTCTCTTAACTGCC 58 NA Rattus norvegicus 81 Fam76a ENSRNOG00000011254 ENSRNOT00000077360 2 1 2 100 5 151104430 151107181 GCAGTCATTACAACAGCCAG 60 151104349 151104370 GTCTCCGTTAGTTGTGATTGAC 60 NA Rattus norvegicus 81 Arr3 ENSRNOG00000002904 ENSRNOT00000076264,ENSRNOT00000003946 1 2 2 82 X 70445542 70445560 CCTCACAGCCTTACAGGAG 60 70445606 70445728 GCAGGTTAGCAACCATCTG 59 NA Rattus norvegicus 81 Cyp3a9 ENSRNOG00000001379 ENSRNOT00000087229,ENSRNOT00000001863 1 2 2 80 12 18704470 18704490 GTACCAACCTTTGCTCTTCAC 60 18704528 18707540 CTTCTTTCTGAACCTTTCAGGAC 60 NA Rattus norvegicus 81 Slc4a7 ENSRNOG00000005957 ENSRNOT00000068171 2 1 3 141 15 11874675 11881758 CTTGCTTGAAAGGAATGGGA 59 11872508 11874573 CATGTCAACCTTGCTAAAGTC 58 NA Rattus norvegicus 81 Tada2a ENSRNOG00000002757 ENSRNOT00000003699,ENSRNOT00000087769 1 2 2 80 10 71421011 71423628 TGGCTTTGGAAATTGGCAG 59 71420949 71420970 TGTTTCATGTAGTGCTTCTCAC 59 NA Rattus norvegicus 81 Ltbp2 ENSRNOG00000012094 ENSRNOT00000082792 3 1 3 98 6 108507328 108507346 ACTGGAGGTGTGAGAACAG 59 108506907 108507269 CATCTATGTCAATGCAGTCTCC 59 NA Rattus norvegicus 81 Tefm ENSRNOG00000004000 ENSRNOT00000090278,ENSRNOT00000005325 1 2 2 83 10 67476597 67477097 TGGAAGAGATTTCTTCAGTCG 58 67476534 67476554 TGTTCTGAATGGAAAGTCCTG 58 NA Rattus norvegicus 81 Steap4 ENSRNOG00000008602 ENSRNOT00000048061,ENSRNOT00000011432,ENSRNOT00000089086 2 3 3 80 4 23117460 23117479 CCCTTGTGATTCCTATTCGT 57 23115919 23117420 TGTCTTTATTAGTTAGGGCCTG 58 NA Rattus norvegicus 81 Fry ENSRNOG00000000894 ENSRNOT00000041365 2 1 4 80 12 5685265 5685289 TCAATGACCATCACACCCTC 60 5685204 5685222 GTATGCACCAGTTTCCACC 59 NA Rattus norvegicus 81 Mpp4 ENSRNOG00000010486 ENSRNOT00000038132 1 1 2 80 9 65943463 65943481 GAAACAGCGGGAATTCTGG 59 65931119 65943422 ACAAATTCCTCTTTAGATCGGG 58 NA Rattus norvegicus 81 Map3k4 ENSRNOG00000017419 ENSRNOT00000084317 1 1 2 80 1 48677746 48680131 TGAGTATCAAGCAGCTTGTG 58 48680172 48680192 GCATGAACTGGTAATACTGCT 59 NA Rattus norvegicus 81 Akap11 ENSRNOG00000009987 ENSRNOT00000058148,ENSRNOT00000079978 2 2 3 80 15 60745330 60746561 CTAAATCAGAGTCACCATTCAGG 59 60745272 60745295 GATGAAATCAATTCTGAGTCCTGG 60 NA Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000076004,ENSRNOT00000076246 1 2 5 80 X 71310533 71310781 TCTGCAAGAAGGAGATCTGG 59 71310472 71310490 GTGCAGAACTCTTGGAAGG 59 NA Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000076709 2 1 5 80 X 71310534 71311522 ACTGAGAGCAGGAGATCTG 58 71310472 71310490 GTGCAGAACTCTTGGAAGG 59 NA Rattus norvegicus 81 Map2k5 ENSRNOG00000007926 ENSRNOT00000051558,ENSRNOT00000010991 1 2 3 80 8 68281900 68281918 GATTCCAAATAGTGGCGCG 60 68275709 68281856 CCTATCACATCCAGCACGT 60 NA Rattus norvegicus 81 Wnt5b ENSRNOG00000008168 ENSRNOT00000089970,ENSRNOT00000011044 3 2 2 146 4 151513693 151513712 GTATCAGGAGCACATGTCCT 59 151508269 151513584 TCTCGGCTACCTATCTGCA 60 NA Rattus norvegicus 81 Trim17 ENSRNOG00000022983 ENSRNOT00000066367,ENSRNOT00000003885 1 2 2 89 10 45313500 45313618 CTTGACCAGGAAGGAGAGC 60 45313671 45313689 ATCTGTCCTGGAACTCTGC 59 NA Rattus norvegicus 81 Hrg ENSRNOG00000001809 ENSRNOT00000081864,ENSRNOT00000090031,ENSRNOT00000047595 3 3 3 82 11 81635522 81635540 TCGACAAGTACAAAGCGGA 59 81625154 81635480 CCCTCCTCTCATTCTTATAACCC 60 NA Rattus norvegicus 81 Ccnl2 ENSRNOG00000018691 ENSRNOT00000025531 3 1 3 84 5 173264686 173264704 CACAGATGTCTTTGTGCGG 60 173264751 173265127 TAAAGGGATCTCCAGTGTCC 59 NA Rattus norvegicus 81 Trmt11 ENSRNOG00000014240 ENSRNOT00000019436 2 1 2 122 1 29432192 29432210 TTGAATCGCTATCTGCTGC 58 29436644 29440772 AAATGGAGACTTTGTCTCCTG 58 NA Rattus norvegicus 81 Thoc7 ENSRNOG00000007701 ENSRNOT00000010675 2 1 3 137 15 12570127 12578673 ACTGACGACGAAGTCATCC 60 12578772 12579449 GTACTGGCTGTATCCTTCCTC 60 NA Rattus norvegicus 81 Mefv ENSRNOG00000008134 ENSRNOT00000081191 2 1 3 83 10 12054851 12054869 CTGAGCTACACGAGATCCA 59 12054916 12055482 GTCACGACAAGAAGGAAGG 58 NA Rattus norvegicus 81 Prkcb ENSRNOG00000012061 ENSRNOT00000016442 1 1 3 80 1 192539602 192539620 TTCCGGTATATCGACTGGG 58 192539664 192574696 GTCTCGCTTGTCTCTAGCT 59 NA Rattus norvegicus 81 Prkcb ENSRNOG00000012061 ENSRNOT00000016442,ENSRNOT00000016418 1 2 3 80 1 192234075 192316382 TTCATTTGGTTAGGTTTGCAGG 60 192379900 192379918 CGTGACGAATTCATGGCAG 60 NA Rattus norvegicus 81 Mdh1b ENSRNOG00000012891 ENSRNOT00000017207 3 1 2 92 9 70432374 70432394 TAATAAACAGGCTCACAGGTG 58 70404283 70432039 CATCAGAGTCTTCTTCAATTGG 57 NA Rattus norvegicus 81 Igbp1 ENSRNOG00000026267 ENSRNOT00000057900,ENSRNOT00000076176,ENSRNOT00000076293 3 3 3 80 X 70333252 70333271 CATCTCTTCCAGAGAAGCCT 59 70333311 70333993 AACCAGTTCCAAATACTTTGGC 60 NA Rattus norvegicus 81 Hyal2 ENSRNOG00000031420 ENSRNOT00000081353,ENSRNOT00000017461 1 2 2 80 8 116327754 116328261 CGCTTCAAGTATGGAGAACTG 59 116328300 116328321 CAGGACACATTGACTATGTAGG 58 NA Rattus norvegicus 81 Csnk1a1 ENSRNOG00000017106 ENSRNOT00000044346,ENSRNOT00000066133,ENSRNOT00000078783 3 3 3 81 18 56899337 56899359 CTCGAAGACCTCTTCAATTTCTG 60 56899397 56900107 TTCTACTGATCATCTGGTCAGC 60 NA Rattus norvegicus 81 Mtap ENSRNOG00000006615 ENSRNOT00000029486 2 1 2 82 5 107727498 107735724 CTTCTTGCCAGCATGTACG 59 107735768 107735788 TCGTGAAGTGAATTAAGCTGG 59 NA Rattus norvegicus 81 Cyth3 ENSRNOG00000001065 ENSRNOT00000082529 1 1 2 81 12 12944798 12944816 TAAGCCGCTTGATGAAGAG 58 12907761 12944753 GTCTTCAGGCACCTTTCTG 59 NA Rattus norvegicus 81 Tax1bp1 ENSRNOG00000008393 ENSRNOT00000011371 1 1 2 80 4 82816362 82816381 AAGTGGAAAGAGCAAGTGAG 58 82816421 82816863 CAACTGTAGACTGTAACTGTCC 59 NA Rattus norvegicus 81 Tax1bp1 ENSRNOG00000008393 ENSRNOT00000011371 2 1 2 80 4 82816369 82816389 AAGAGCAAGTGAGAATTGCTG 59 82816430 82816870 TCTCTGCCAACTGTAGACTG 59 NA Rattus norvegicus 81 Atp5c1 ENSRNOG00000019223 ENSRNOT00000041346 3 1 4 80 17 72247450 72251889 TCTTCTCAAGAAGGCATGC 58 72251933 72251951 ACGGCTTCTAACTGTTCCT 59 NA Rattus norvegicus 81 Cdv3 ENSRNOG00000010186 ENSRNOT00000044956 3 1 2 81 8 111840529 111840551 CCACCAGAAATATACAGTGACAC 59 111840130 111840489 TTAAGTACCTGTTCCGGCTC 60 NA Rattus norvegicus 81 Angel1 ENSRNOG00000010567 ENSRNOT00000078265,ENSRNOT00000014635 3 2 2 81 6 110646940 110646960 TTAGGTCTTGGGATGACAGTG 60 110646199 110646898 CCAACCTGTGATCACTTCTG 59 NA Rattus norvegicus 81 Pak1 ENSRNOG00000029784 ENSRNOT00000049321,ENSRNOT00000091952 2 2 2 80 1 162862544 162865957 ATTGGACAAGGTGCTTCAG 58 162869988 162870008 GTTCATCTGTTTAATGGCCAC 58 NA Rattus norvegicus 81 Cdk11b ENSRNOG00000017213 ENSRNOT00000050188 2 1 2 93 5 173067804 173067823 CGATTTGACCGAGATTCTGG 59 173067879 173067899 CACATAGTCCCTCGGTAGG 59 NA Rattus norvegicus 81 Ank3 ENSRNOG00000053288 ENSRNOT00000082181 3 1 2 80 20 20274077 20274781 CATAGAGTCAAAGATGGTGGTG 59 20276037 20276055 ATATTCCCGTAGTGGGCAG 59 NA Rattus norvegicus 81 LOC100364190 ENSRNOG00000006617 ENSRNOT00000008688 3 1 2 80 4 76852062 76908452 CATAATTCTCAAGCTCGACCA 58 76908492 76908512 TTGGGAGAATTGAAGATCGTG 59 NA Rattus norvegicus 81 Ankdd1b ENSRNOG00000025377 ENSRNOT00000034041 1 1 2 80 2 27258068 27266478 CCAAACAAACTCAACATCAGTG 59 27258009 27258030 CTCACTGAGAAGAAAGTTGACG 59 NA Rattus norvegicus 81 Ctla4 ENSRNOG00000054129 ENSRNOT00000091237,ENSRNOT00000088183 2 2 2 80 9 67699616 67702709 CTCTGAAGCCATACAAGTGAC 59 67702749 67702769 GCATATTCACATGGAAAGCTG 58 NA Rattus norvegicus 81 RGD1562673 ENSRNOG00000057127 ENSRNOT00000082035,ENSRNOT00000080810,ENSRNOT00000091772 1 3 3 92 10 13321420 13323535 CATTAAGGGCATCCAGCTG 59 13321346 13321365 CCATCCTCCAGAAGGAACTC 60 NA Rattus norvegicus 81 Stmn1 ENSRNOG00000016810 ENSRNOT00000076052,ENSRNOT00000022574 2 2 4 101 5 152685885 152685903 CAGAGGAGAAACTGACCCA 59 152685968 152686312 CAACGTGCTTGTCCTTCTC 59 NA Rattus norvegicus 81 Hdac9 ENSRNOG00000004158 ENSRNOT00000005521 1 1 2 80 6 53524731 53524749 TGTTCTCCACCAGTCTGTG 59 53506438 53524690 GACTTCCAATACTTGCTTTGGA 59 NA Rattus norvegicus 81 Acaa2 ENSRNOG00000013766 ENSRNOT00000067018,ENSRNOT00000085601 3 2 2 85 18 70760530 70762054 GTTCACGAGTTAAGGCGTC 59 70762103 70762121 TGGATGATCAGGGAGATGC 59 NA Rattus norvegicus 81 Cyb5b ENSRNOG00000011142 ENSRNOT00000086435,ENSRNOT00000015006 1 2 2 80 19 39386429 39389315 CAATTCATGCCAAAGTTCCT 57 39389357 39389376 AAGTGACGATACAGGAAACC 58 NA Rattus norvegicus 81 Vprbp ENSRNOG00000013841 ENSRNOT00000079801,ENSRNOT00000018932 1 2 2 80 8 115589170 115589650 TATCTTGCTGTCATTGAGAACC 59 115589690 115589709 CCTACCCACTTCATAAAGCC 58 NA Rattus norvegicus 81 Rce1 ENSRNOG00000019468 ENSRNOT00000026454 3 1 2 97 1 219862079 219862100 GGAAGTATCTTCTTGTCTGCAG 59 219861463 219861757 CCTATCAGGTGTCCTGTGC 60 NA Rattus norvegicus 81 AC117142.1 ENSRNOG00000052613 ENSRNOT00000078017,ENSRNOT00000090658 1 2 2 80 2 235345530 235345940 TGGCTTCTACAGAAGTAGGG 59 235345983 235346001 ATTAGGGCAGTTCCTCTCC 59 NA Rattus norvegicus 81 Csrp3 ENSRNOG00000014327 ENSRNOT00000019311,ENSRNOT00000092211 1 2 2 81 1 104151375 104152938 CTGCAGTTCCAACAATCCC 59 104151312 104151331 ATTCTCCAAACTTCGCAGAG 58 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000045082,ENSRNOT00000003741,ENSRNOT00000076450,ENSRNOT00000076503,ENSRNOT00000076057,ENSRNOT00000088114 2 6 7 80 X 70644939 70645257 GCACTTATGGAAATGAACCG 58 70645299 70645318 TTCTTGCTCCAGTTTCATGG 59 NA Rattus norvegicus 81 Dlg3 ENSRNOG00000002767 ENSRNOT00000076450 1 1 7 122 X 70597270 70600494 TATGAGCAGGTGAATGGCA 59 70600976 70600994 GTCATCAGGGACATGAGGG 60 NA Rattus norvegicus 81 Slc1a3 ENSRNOG00000016163 ENSRNOT00000035821 2 1 4 80 2 57876737 57933370 CTGTCATTGTGGGAATGGC 59 57876675 57876698 TAGTCATGTAATAGACCACAGCTC 60 NA Rattus norvegicus 81 Tmem123 ENSRNOG00000010584 ENSRNOT00000086251 2 1 2 80 8 5985289 5985588 TTCCTTTGTTGACAGCAGG 58 5993973 5993992 TGCTAATCTGACTGGTCTGG 59 NA Rattus norvegicus 81 Hapln4 ENSRNOG00000049949 ENSRNOT00000072565 1 1 1 93 16 21087811 21087829 ATGAGTTGGAGGATGACGC 60 21085633 21085651 AAAGTCATCTTGTAGCGGC 58 NA DesignNoJunction Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000081940,ENSRNOT00000074087 3 2 6 149 17 77195784 77195803 TATGTTGTTGGCTGTTGCT 58 77195916 77196913 CACTTCGATTCCCACACTC 58 NA Rattus norvegicus 81 Spg11 ENSRNOG00000021954 ENSRNOT00000080253 2 1 2 80 3 114010846 114010865 CTCAAATGCCACACTACCTG 59 114006217 114010803 CTGTCCAAACTCGAAGTGC 59 NA Rattus norvegicus 81 Akr1c2 ENSRNOG00000029844 ENSRNOT00000051342 2 1 2 81 17 69391736 69395070 AAAGAGAACATGAAGCTGAGTC 59 69391676 69391694 TTCCACCAGCTATGTACCG 59 NA Rattus norvegicus 81 Picalm ENSRNOG00000018322 ENSRNOT00000084268,ENSRNOT00000091470,ENSRNOT00000025415 3 3 4 80 1 154447408 154447429 CAACCTTAATATACAGCCAGCC 59 154447467 154457087 ACATAAACTGTATCTGTGCTCC 58 NA Rattus norvegicus 81 Capn5 ENSRNOG00000014251 ENSRNOT00000083055 1 1 2 140 1 163114613 163114631 TTACTCAGCTCTGAAGCGG 60 163103735 163114509 CAGATATCCTGCAGAGGCC 60 NA Rattus norvegicus 81 Mdc1 ENSRNOG00000032813 ENSRNOT00000081676,ENSRNOT00000086914,ENSRNOT00000046798 3 3 5 81 20 3409195 3409321 GAGCATCAGAAGCAGATTCAC 60 3409134 3409155 TCTTCTTCCTTGACGACTACAG 60 NA Rattus norvegicus 81 Plcb1 ENSRNOG00000004810 ENSRNOT00000051184,ENSRNOT00000006389 2 2 2 80 3 128336299 128336421 GAAGGAAATCTGCGAGAAAGAG 60 128336459 128336480 TTGGCTTCTGTTATCTTCTCCT 59 NA Rattus norvegicus 81 Plcb1 ENSRNOG00000004810 ENSRNOT00000051184,ENSRNOT00000006389 3 2 2 80 3 128336300 128336421 AAGGAAATCTGCGAGAAAGAG 59 128336460 128336481 CTTGGCTTCTGTTATCTTCTCC 59 NA Rattus norvegicus 81 Liph ENSRNOG00000047894 ENSRNOT00000075512 3 1 2 80 11 82696369 82696388 ACAGATTAGATCCCAGCGAC 59 82698795 82698893 GATGACACTTACTGTAGCCCA 60 NA Rattus norvegicus 81 Prkd3 ENSRNOG00000005289 ENSRNOT00000007492,ENSRNOT00000084528 3 2 2 81 6 1581574 1583197 GTTGTCCTGTCAGCTTTGG 59 1581511 1581532 TAGGTGCTTTGTAAGAATGGAC 59 NA Rattus norvegicus 81 Prkd3 ENSRNOG00000005289 ENSRNOT00000007492 2 1 2 80 6 1570535 1570553 CAAAGAGGAAGAGCAGCAC 59 1567048 1570494 AATGTCTCTTTCTCAGGTTGTC 58 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000079440 3 1 7 149 1 102924360 102929682 ATGATTGTCACAAACCCAGTG 59 102929793 102930389 GACCTCATAGCCACCATCC 60 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000017851 1 1 7 80 1 102924307 102924325 TCATGAAAGCCATCGTTCC 58 102924366 102926955 AAATATCGACTGGGTTTGTGAC 59 NA Rattus norvegicus 81 Wdr44 ENSRNOG00000029068 ENSRNOT00000085185 1 1 3 146 X 120916784 120917495 GAATTAAGCAATGATGCCACAC 59 120928699 120928717 AGCAAGATGCTTTGCTCTC 59 NA Rattus norvegicus 81 Wdr44 ENSRNOG00000029068 ENSRNOT00000088661,ENSRNOT00000040742 1 2 3 80 X 120959345 120959367 TCACTGTCCATGAAGTATAAGGG 60 120959404 120960427 GAGGTAAGTAAAGTCATGGCTG 59 NA Rattus norvegicus 81 LOC100366140 ENSRNOG00000048116 ENSRNOT00000037288,ENSRNOT00000074090 2 2 2 81 1 87777167 87777268 ACCAGCGAATTCATGTAAGAG 59 87777106 87777127 ATGATTAGCTCTGACCTGTAGG 59 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000042642 1 1 10 88 7 117253868 117289764 CATTGCAGATGAACGAGACC 59 117253490 117253508 CACTGATGTGCCTTTGAGC 60 NA Rattus norvegicus 81 Fermt2 ENSRNOG00000009102 ENSRNOT00000086368 2 1 2 80 15 19811433 19811933 GAGAGTTGATAACAGCACGG 59 19811372 19811392 TGAATCTCATCTTGGCTTCGA 60 NA Rattus norvegicus 81 Fam126a ENSRNOG00000010517 ENSRNOT00000080229 1 1 2 80 4 7707685 7769922 AAAGACATGGAGGAAACAAGAG 59 7769963 7769981 TCTGCAAATTCCAGCAGGA 60 NA Rattus norvegicus 81 Sh2d3c ENSRNOG00000054560 ENSRNOT00000087762,ENSRNOT00000078366 2 2 2 81 3 11790208 11791182 GATGGCCCAGATTTCAAGG 59 11791225 11791245 CTTCTCATACAGAATGGCACC 59 NA Rattus norvegicus 81 Slc11a2 ENSRNOG00000019550 ENSRNOT00000081327,ENSRNOT00000026531 3 2 4 80 7 142035043 142036927 AGTTCTCCAACGGAATAGGC 60 142034982 142035003 CGACAAAGTACATGTTGATGGA 59 NA Rattus norvegicus 81 Mff ENSRNOG00000015428 ENSRNOT00000020705 2 1 3 80 9 90891938 90907023 TCAGAAACGATTCCATGTATGG 59 90907063 90907082 CATCTACCACAGACATGTCC 58 NA Rattus norvegicus 81 Tln2 ENSRNOG00000018373 ENSRNOT00000024885,ENSRNOT00000081450,ENSRNOT00000064613 2 3 5 80 8 73194750 73194769 GTCTACAGCTGTGTATGACG 58 73192767 73194707 CCATAGTCAGAAGCTTGCC 58 NA Rattus norvegicus 81 LOC100359960 ENSRNOG00000033244 ENSRNOT00000060074 2 1 1 78 8 43480695 43480714 CTTCCTCTTCAGGCCTTAGG 60 43480604 43480622 CCTTAACCAGGTGACCCAG 60 NA DesignNoJunction Rattus norvegicus 81 Drd2 ENSRNOG00000008428 ENSRNOT00000083419 2 1 2 131 8 53736800 53739331 AGACACCACTCAAGGATGC 60 53739426 53739444 GATCAGGGAGAGTGAGCTG 59 NA Rattus norvegicus 81 Syt17 ENSRNOG00000017136 ENSRNOT00000078825,ENSRNOT00000023090 1 2 2 80 1 188063815 188087774 CAGCTCTCAGAATGAAGTGGA 60 188063755 188063773 TCCACATTCAGTCTGCCAG 60 NA Rattus norvegicus 81 Map1lc3b ENSRNOG00000017905 ENSRNOT00000051352,ENSRNOT00000079382 2 2 3 80 19 53638215 53639691 AGAACGCAAACAAAGAGTGG 59 53639732 53639752 ATTGCTGTAGAACCTACTGGG 60 NA Rattus norvegicus 81 Impa2 ENSRNOG00000018516 ENSRNOT00000085655 2 1 3 80 18 63024200 63029319 ACAAGACGATCATCAGAAAGG 58 63029359 63029379 TTTCTGTCACAAGATCTGCAG 59 NA Rattus norvegicus 81 LOC690784 ENSRNOG00000026864 ENSRNOT00000033743,ENSRNOT00000082879 2 2 2 92 4 181346953 181347346 AAGTTGTGGAGATAAGCCAG 58 181346880 181346898 TTCTGTGTAAGTGGGAAGC 57 NA Rattus norvegicus 81 Trrap ENSRNOG00000025244 ENSRNOT00000076323 3 1 3 91 12 11605306 11605324 AGATTGTCGGAGTCTGGTG 59 11605146 11605251 TAAACTGAGCACCAGGAGC 60 NA Rattus norvegicus 81 Fam115e ENSRNOG00000038872 ENSRNOT00000075946,ENSRNOT00000059395 3 2 2 80 4 72011188 72013102 CTAGAAACTTATCTCCAGCTCCA 60 72011130 72011150 AGTGAGGGTTTGGTAGTTAGC 60 NA Rattus norvegicus 81 Lonrf3 ENSRNOG00000013092 ENSRNOT00000017550 2 1 2 81 X 122945068 122945091 GAGAATTTCTCTACTGTGTATCCC 59 122945130 122951528 GGAAGCTCTGAATTCTCCCT 59 NA Rattus norvegicus 81 Stxbp5 ENSRNOG00000013351 ENSRNOT00000044778 2 1 3 94 1 3872220 3890876 CGACTTCCGATGTGAAAGAC 59 3872145 3872163 AAGAGCAGAAATGGCTTCC 58 NA Rattus norvegicus 81 Dmrtc1c1 ENSRNOG00000037923 ENSRNOT00000057644,ENSRNOT00000076215 1 2 2 80 X 72686384 72686544 CAAGTCAGGGAACAAGGAG 58 72686588 72686606 CTGGCGTCTCTTTATTGGT 58 NA Rattus norvegicus 81 Ropn1l ENSRNOG00000042781 ENSRNOT00000065312 3 1 2 81 2 84522999 84523019 CATTGGATCCAGAATTCTCGG 59 84520579 84522961 CCATTCTTTCTAGATTCTGACGTG 60 NA Rattus norvegicus 81 Pigc ENSRNOG00000026497 ENSRNOT00000077069,ENSRNOT00000035558,ENSRNOT00000076417 3 3 3 60 13 79888255 79888274 ATCTATGCCCGGAAATACCA 59 79888296 79888315 GTTGTATCACCACACTGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prrc2b ENSRNOG00000010217 ENSRNOT00000066368,ENSRNOT00000088576 3 2 3 80 3 11198446 11198465 AGCAAGTACTCGACTCTCAG 59 11198503 11199043 TCTAGGAATAACTGAGGATCTGAC 59 NA Rattus norvegicus 81 Kdm5a ENSRNOG00000010591 ENSRNOT00000090218 2 1 2 99 4 152960564 152960582 AAAGTATGACTGGTCGGGC 60 152960644 152966545 TACCCAGTCTACCTTGTCCT 59 NA Rattus norvegicus 81 Tcte3 ENSRNOG00000015293 ENSRNOT00000078312 1 1 2 80 1 56973184 56975910 AGCAGATATTAAAGGCCAGTC 58 56973124 56973143 GATCTGCCAATTCAAGTGAC 57 NA Rattus norvegicus 81 Wnt10b ENSRNOG00000061238 ENSRNOT00000081468 2 1 1 106 7 140450501 140450519 CTTGGATTCCAGGGAAGCT 59 140449623 140449641 ATTTGCACTTCCGCTTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Adcyap1r1 ENSRNOG00000012098 ENSRNOT00000043851 2 1 4 80 4 85694882 85703849 AGTCCAGCATCTACTTACGG 59 85703891 85703910 AGGCGAATACTGTGTAGTGG 60 NA Rattus norvegicus 81 Acp1 ENSRNOG00000005260 ENSRNOT00000077442 1 1 2 85 6 49844498 49844516 GTAACATTTGCCGGTCACC 60 49844195 49844450 GTCAATGGCCCAGTTATCTG 59 NA Rattus norvegicus 81 Acp1 ENSRNOG00000005260 ENSRNOT00000007287 2 1 2 81 6 49844351 49844456 ACGTTTCAGATAACTGGAGGA 59 49844290 49844308 TTCTGCCCTCGATAGTCAG 59 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000078830 3 1 7 80 5 166009917 166012352 GATATTCCTAGGACCTTCTACCG 60 166009859 166009877 TGTCACTCGGTTCAGAAGG 59 NA Rattus norvegicus 81 Csn1s1 ENSRNOG00000055596 ENSRNOT00000088491,ENSRNOT00000087923 1 2 2 80 14 21998355 21999126 TGGCACAGAAACATCATCC 58 21997904 21997922 GGCTGTATGCATTCATCCT 58 NA Rattus norvegicus 81 Csn1s1 ENSRNOG00000055596 ENSRNOT00000088491,ENSRNOT00000087923 3 2 2 81 14 21998355 21999126 TGGCACAGAAACATCATCC 58 21997903 21997921 TGGCTGTATGCATTCATCC 58 NA Rattus norvegicus 81 Gbgt1 ENSRNOG00000039906 ENSRNOT00000006553,ENSRNOT00000074271 1 2 2 81 3 5121019 5121040 TGTCCAGAAAGTTGTAAGTGTG 59 5122313 5123383 GACAAGAACATCATTCCTAATGGG 60 NA Rattus norvegicus 81 Slc12a1 ENSRNOG00000005367 ENSRNOT00000008860 3 1 3 81 3 117430305 117436112 GGGAATTGGTCTGGGAGTC 60 117436152 117436175 GCAAATAGCAGACATAGAGATACC 59 NA Rattus norvegicus 81 Osbpl7 ENSRNOG00000009473 ENSRNOT00000085830 3 1 2 84 10 84988061 84988080 GAAGACATCATGCCTGAGAG 58 84988126 84988300 CAAAGTACCTCTTGTGCCAG 59 NA Rattus norvegicus 81 Acss3 ENSRNOG00000004448 ENSRNOT00000082141 3 1 2 81 7 49063874 49074132 GGAAATATCGTGGTAAAGTTGC 58 49063814 49063833 ATAAATGCTTGAACGCTTCC 57 NA Rattus norvegicus 81 RGD1560225 ENSRNOG00000017146 ENSRNOT00000058382,ENSRNOT00000090369 2 2 2 80 18 77291673 77291691 TCACTATGAGACGGAAGGC 59 77275848 77291630 AAGTAACCATGTAGCTGCAC 58 NA Rattus norvegicus 81 Acat2 ENSRNOG00000019189 ENSRNOT00000077707 2 1 2 80 1 47985726 47985744 GAGTAGGACCGATTCCAGC 60 47989494 47991232 CAAACACGTCAACATCTTCCT 59 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000071200,ENSRNOT00000025652,ENSRNOT00000066839,ENSRNOT00000071003 2 4 10 82 9 95234839 95298734 CTTTCCAAGGAATTTGAAGCCT 60 95298777 95298795 TCTGAGACCATGGATCCCA 60 NA Rattus norvegicus 81 Gpha2 ENSRNOG00000021020 ENSRNOT00000028536 2 1 1 86 1 221596907 221596925 TCAGTGCTGTACCATCAGC 60 221597061 221597079 GTGAAGATCTCGAGCTCCC 60 NA DesignNoJunction Rattus norvegicus 81 Ugt2a1 ENSRNOG00000001973 ENSRNOT00000041514 1 1 5 80 14 22213008 22213026 CAATCTCATTGCCTCAGCC 59 22214543 22214566 GATCCTAATGTGCGTCTTTCTC 59 NA Rattus norvegicus 81 Ugt2a1 ENSRNOG00000001973 ENSRNOT00000002704 2 1 5 80 14 22213008 22213026 CAATCTCATTGCCTCAGCC 59 22214542 22214566 GATCCTAATGTGCGTATCTTTCC 60 NA Rattus norvegicus 81 Meig1 ENSRNOG00000016283 ENSRNOT00000090779 3 1 2 95 17 78822723 78826621 GCTGTTCCCAGAAATAATTGC 58 78826678 78826696 TCTGACCATTTCTTGGCAC 58 NA Rattus norvegicus 81 Mprip ENSRNOG00000003226 ENSRNOT00000080666 3 1 3 109 10 46118789 46118807 CAAATGGGTGTCATGCGAG 60 46118880 46121876 TCACATGTAGCCTTGAGGC 60 NA Rattus norvegicus 81 Prkcd ENSRNOG00000016346 ENSRNOT00000067639 1 1 2 80 16 6659378 6659396 CTCTTTGAGTCCATCCGGG 60 6658849 6658869 GAAGAGCTGATCCACAGGG 60 NA Rattus norvegicus 81 Mcc ENSRNOG00000011271 ENSRNOT00000085714,ENSRNOT00000079667 3 2 2 102 18 35781600 35781618 GACACTCCGCTATGAGGAG 59 35762732 35781534 ATCTTCCTCCCTGATGGTG 59 NA Rattus norvegicus 81 Kif18a ENSRNOG00000005037 ENSRNOT00000006689 2 1 2 81 3 100366248 100366267 TTGGGTTTGAATTTGTGGCT 59 100366308 100374999 ATGCAAATACTAGAAGTGACCG 59 NA Rattus norvegicus 81 Rrad ENSRNOG00000011901 ENSRNOT00000016259,ENSRNOT00000081547 3 2 2 86 19 563180 563298 ACATTTGGGAACAGGATGG 58 563345 563366 CCGTTATTGAGTACACAATGAC 58 NA Rattus norvegicus 81 Rrad ENSRNOG00000011901 ENSRNOT00000081547 1 1 2 81 19 562362 562382 GTTTACAAGGTGGCTGCTG 60 562426 562446 CAGGTCCGTCTTCTATACCAC 60 NA Rattus norvegicus 81 Bclaf1 ENSRNOG00000058050 ENSRNOT00000078589 2 1 5 80 1 15815320 15815340 GTTCACTTCATACCAGAAAGC 57 15815381 15816598 GAGATGTCAATCCTCCTGTG 58 NA Rattus norvegicus 81 Slc27a2 ENSRNOG00000010128 ENSRNOT00000067700 1 1 2 80 3 119024872 119024891 GAAGTCACGTTCACCACAC 59 119028044 119028063 GTGATTAATGGTTGCAGCCT 59 NA Rattus norvegicus 81 Rps6ka5 ENSRNOG00000004362 ENSRNOT00000064716 3 1 2 81 6 124598864 124598884 TCTTTCTGTGGGACTATTGAG 57 124583636 124598821 CTGAGCTCATTCCCTTGTC 58 NA Rattus norvegicus 81 Tep1 ENSRNOG00000051706 ENSRNOT00000088981,ENSRNOT00000079506 3 2 2 80 15 27765418 27765623 GAGGATACGTAAAGCTGTGG 58 27765357 27765377 TGATGCAGTTTAGAGACTTGG 58 NA Rattus norvegicus 81 Kpna6 ENSRNOG00000000127 ENSRNOT00000000139 3 1 2 84 5 147866172 147867574 ATGGTGTCAGAGACCATGG 59 147866106 147866125 TTTCCTCAGGGTTTAAGGCA 59 NA Rattus norvegicus 81 Stk39 ENSRNOG00000024808 ENSRNOT00000037133,ENSRNOT00000087122 3 2 2 80 3 54548464 54548483 TCGCAACAATCCTTAAGGAG 58 54547288 54548423 CAGCTTTCAAATCCCTATGGA 58 NA Rattus norvegicus 81 Oas1e ENSRNOG00000031726 ENSRNOT00000057266 3 1 2 81 12 41282913 41282931 GAGGTGGAGTTTGATGTGC 59 41284774 41284857 CATAGATTTCCGTGTTTGGGT 59 NA Rattus norvegicus 81 LOC494224 ENSRNOG00000030258 ENSRNOT00000046005 1 1 1 70 14 21821903 21821921 AATAACTGCTTGTCTCCCG 58 21819575 21819593 CAGGTAACTCATCACTGGC 58 NA DesignNoJunction Rattus norvegicus 81 Zfp507 ENSRNOG00000013565 ENSRNOT00000092121 2 1 2 81 1 92091308 92091329 ACCAGAACTACAACTATGAGCA 59 92087488 92091268 GAAGTTTCTCTACTTGGGCTG 59 NA Rattus norvegicus 81 Cacna1d ENSRNOG00000013147 ENSRNOT00000048459 3 1 4 187 16 6189094 6189350 TATGTCAGACCCTACAGCC 58 6187653 6188946 TTCGCTATATCTTGAATCTGCG 59 NA Rattus norvegicus 81 Ube3b ENSRNOG00000047219 ENSRNOT00000074000,ENSRNOT00000080049 1 2 2 80 12 47972914 47972932 TCCCAGAAGAAGTCCAACC 59 47971606 47972870 GTCATTGAGGCCGTAATCC 58 NA Rattus norvegicus 81 Ube3b ENSRNOG00000047219 ENSRNOT00000074000 2 1 2 80 12 47953440 47953462 GAATGCACTCAATCAAGAACC 58 47953378 47953396 GAGAACATCGGATCCACTC 57 NA Rattus norvegicus 81 Ralgapb ENSRNOG00000014836 ENSRNOT00000088748 3 1 3 82 3 154935133 154935151 AAGTGGAGGAAGCACAGAG 59 154935191 154936959 CTGTATTAAGAGCATAATCCCTCAG 59 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000083657,ENSRNOT00000001098,ENSRNOT00000090039 3 3 6 98 20 3430210 3430228 GAGCAAATGGCCAAGAAGG 60 3429982 3430148 GATCTCTTCTGCCACCTGG 60 NA Rattus norvegicus 81 Golim4 ENSRNOG00000024213 ENSRNOT00000064588,ENSRNOT00000037115 2 2 3 80 2 174336900 174336919 CTGTGGAGAATGATGTTGCA 59 174335450 174336860 GGTTATCTCTATCATAGGCACC 58 NA Rattus norvegicus 81 Casp12 ENSRNOG00000033434 ENSRNOT00000010243 1 1 2 80 8 2662685 2678115 TCTGCATCAGAATCCAGGG 59 2678157 2678177 CATTAGATGTGATGCATGGGC 60 NA Rattus norvegicus 81 Dnajc6 ENSRNOG00000052887 ENSRNOT00000086259 2 1 2 88 5 120459588 120461027 TTGGCAAGATCAGAAATCAGAG 59 120461076 120461094 GTTCATCATCCGACTGCTC 58 NA Rattus norvegicus 81 Elmod3 ENSRNOG00000038102 ENSRNOT00000086725 2 1 2 80 4 100423162 100424700 TGTCCTCAAAGATTTGGAAGC 59 100423102 100423121 AACTGGGCTAGGTAGTTGTC 59 NA Rattus norvegicus 81 Phykpl ENSRNOG00000048357 ENSRNOT00000086443 2 1 2 85 10 34954488 34954509 AAGCTGGATGACATTCTAACAG 59 34955438 34957621 TGAGTATCTTCTGGAGGGTG 58 NA Rattus norvegicus 81 AABR07049128.1 ENSRNOG00000061730 ENSRNOT00000046931 3 1 1 60 5 106952304 106952327 CAAGCGATCCCTATTCTATATGAG 59 106952343 106952364 CCTTTGATGTGAAGATGTTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cluap1 ENSRNOG00000007117 ENSRNOT00000078577 2 1 2 94 10 11874602 11877430 GACCTCCGCAATTTCACAG 59 11874526 11874544 GAGACAAGCCCAAAGTTGG 59 NA Rattus norvegicus 81 Sf1 ENSRNOG00000021085 ENSRNOT00000028628 1 1 2 177 1 221740143 221743005 CTAACCCTGAGGACAGGTC 59 221743146 221743370 GCTGGAGGCTTGTAATCTG 58 NA Rattus norvegicus 81 Atp7a ENSRNOG00000061367 ENSRNOT00000080141,ENSRNOT00000091527 1 2 3 80 X 77154658 77157302 GATGGCTCATAAGGTAAAGGT 58 77157342 77157362 TTTACTTGGTTCACTACTGGG 58 NA Rattus norvegicus 81 Ppfibp2 ENSRNOG00000019667 ENSRNOT00000088110 3 1 2 80 1 171921020 171921039 CTCAAGCTGGTTGGTATGGA 60 171921078 171929059 GATCACATTCAGAACTGACTCTG 59 NA Rattus norvegicus 81 Rundc3b ENSRNOG00000008463 ENSRNOT00000087657,ENSRNOT00000030224 2 2 2 80 4 22553176 22553195 AACAGCTGGTTCAACAAGTG 59 22553233 22561669 GAGTTCTTCAAGATAACCCTTCTG 59 NA Rattus norvegicus 81 Ggcx ENSRNOG00000012975 ENSRNOT00000017927 2 1 3 80 4 100281086 100281109 GAACAATCACTCCTATCTGTATGG 59 100281147 100284521 CCATCCACAGACCAGTAGTG 60 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000089667,ENSRNOT00000080158,ENSRNOT00000080419 1 3 12 99 20 3358183 3358201 TTCTTTGCCCATCAACACC 59 3360455 3360679 CCTTCAGGAATTCTCTGTCAC 59 NA Rattus norvegicus 81 Abcc5 ENSRNOG00000029178 ENSRNOT00000091595 1 1 3 80 11 84399536 84425173 ACAGATCAGTTTGGAATGCC 59 84425215 84425234 GAATGCACAGAGATGTCCAG 59 NA Rattus norvegicus 81 Acox1 ENSRNOG00000008755 ENSRNOT00000042372 3 1 2 80 10 104747516 104747539 ATGAGGACTATAACTTCCTCACTC 59 104747457 104747477 CCCTCATCTTTCCCATGGT 59 NA Rattus norvegicus 81 Cacnb1 ENSRNOG00000004518 ENSRNOT00000006098 1 1 2 81 10 85964772 85964791 ACAACTCCAGTTCCAGTCTG 60 85963475 85964728 TTCTGCTTCTGTTTGGCAC 59 NA Rattus norvegicus 81 Cbx7 ENSRNOG00000016875 ENSRNOT00000077731,ENSRNOT00000022631 3 2 2 101 7 121151327 121151345 GTGAAGTGGAAAGGATGGC 59 121141741 121144277 TTTCTCCTCCTTCTCCTCG 58 NA Rattus norvegicus 81 Eno1 ENSRNOG00000017895 ENSRNOT00000081579,ENSRNOT00000024106 2 2 2 80 5 167297622 167298212 TCAAGGACTACCCAGTGGT 60 167298255 167298274 CAGTAGCTGTGAACTTCTGC 59 NA Rattus norvegicus 81 Nr1d1 ENSRNOG00000009329 ENSRNOT00000012537 3 1 2 83 10 86687976 86690582 CAACACAGGTGGTGTTATCAC 60 86687913 86687934 CTGTCACTATAGAGGGACTCTG 59 NA Rattus norvegicus 81 Smoc2 ENSRNOG00000014166 ENSRNOT00000019317,ENSRNOT00000079718 1 2 2 183 1 56242593 56289144 GTTCTTGAGAGTCGATCAAGAC 59 56289288 56299800 CCTGGACACATCTTTGCAG 59 NA Rattus norvegicus 81 Sult1d1 ENSRNOG00000001960 ENSRNOT00000072483,ENSRNOT00000080114 3 2 3 105 14 22122626 22124644 ATGAGGAAGGGCATTTCAG 58 22124712 22124731 ACTTGAGTGTTGACTCTTCC 58 NA Rattus norvegicus 81 Ms4a7 ENSRNOG00000020953 ENSRNOT00000091506 1 1 2 80 1 227496071 227497253 AACCAAAGCCTTTGCACTG 60 227496009 227496027 GTGACGAAGAAGAGACCGA 59 NA Rattus norvegicus 81 Pparg ENSRNOG00000008839 ENSRNOT00000082969,ENSRNOT00000051858,ENSRNOT00000012137 3 3 3 80 4 147361935 147372232 TCTCACAATGCCATCAGGT 59 147372273 147372294 GTCGATATCACTGGAGATCTCC 60 NA Rattus norvegicus 81 Caly ENSRNOG00000018337 ENSRNOT00000024765,ENSRNOT00000089729 3 2 2 100 1 212539866 212539885 CCTTTGCTATGGCACTTCTG 59 212538619 212539804 GATCTTGTGCCGAAGTAGGA 60 NA Rattus norvegicus 81 Col13a1 ENSRNOG00000000552 ENSRNOT00000085877 1 1 2 80 20 31473423 31473442 GCCTAGATGGCAGTAAAGGA 59 31468407 31473380 CTGGAGTACCAGGCAATCC 60 NA Rattus norvegicus 81 Ppp1r12a ENSRNOG00000004925 ENSRNOT00000041473 2 1 4 80 7 51425413 51431824 ACACAGAGCAGGTCATACC 59 51425351 51425371 TCTTGCTTGTCTAGATCTTGC 58 NA Rattus norvegicus 81 Eefsec ENSRNOG00000012954 ENSRNOT00000063950 2 1 2 81 4 120295693 120295711 GTGATGACTGGGACCATCC 60 120219424 120295650 AGTCATCCATTACCTTGAGGG 59 NA Rattus norvegicus 81 Eefsec ENSRNOG00000012954 ENSRNOT00000017323 2 1 2 83 4 120295693 120295711 GTGATGACTGGGACCATCC 60 120233422 120295648 CACTTTCTTCACCACCTTGAG 59 NA Rattus norvegicus 81 Ranbp2 ENSRNOG00000000796 ENSRNOT00000071386,ENSRNOT00000001044 3 2 2 80 20 28046426 28047182 GGTTCAGAAATTGCCTGTCC 60 28047222 28047243 TCACTGTAGTCTTCAAGTTCCT 59 NA Rattus norvegicus 81 Ranbp2 ENSRNOG00000000796 ENSRNOT00000001044 3 1 2 83 20 28057755 28057773 GCCTAGTCCGAAATGAAGC 59 28057820 28057925 AATCCCACTGTCCTTCAGG 59 NA Rattus norvegicus 81 Hoxd1 ENSRNOG00000001572 ENSRNOT00000002140 2 1 1 60 3 61686338 61686359 GAGTGGATGAAAGTGAAGAGGA 60 61686690 61686708 TGGCTCCATATTCGGACAG 59 NA DesignNoJunction Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000078064,ENSRNOT00000087017,ENSRNOT00000013961 1 3 8 80 6 128053950 128053968 AAGAAAGTCTTCTCCCAGC 57 128054012 128055007 CTTGTGGACCACTTGAGAG 58 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000082680 1 1 8 80 6 127946756 128075359 GCACACTAGGAGAGGACAC 60 128075403 128075421 TGATGGAGGCCAATGTGAG 60 NA Rattus norvegicus 81 Fam118a ENSRNOG00000013764 ENSRNOT00000044274 1 1 2 80 7 125960227 125960245 GACTGTGCAAAGAGGAAGC 59 125960286 125963173 TCCAGCATCATCAGTATCTGAC 60 NA Rattus norvegicus 81 Zfp532 ENSRNOG00000017116 ENSRNOT00000082403 3 1 2 93 18 61259173 61259191 TTGGCTTCAAGATCCTGGG 60 61259246 61308863 TGATCAGATGTTTGGAGTGGA 59 NA Rattus norvegicus 81 Arl5b ENSRNOG00000018714 ENSRNOT00000051349 1 1 2 80 17 82085631 82085649 GTACCTCACCCTCAGTTCC 59 82085693 82086800 TGGCATAACCCTTCTCCTG 59 NA Rattus norvegicus 81 Srd5a3 ENSRNOG00000002216 ENSRNOT00000003021 1 1 3 81 14 34561655 34562178 CTTCTCGGATACAAGCAGG 58 34561592 34561611 AGTCTCCGAAGACTATGGAC 58 NA Rattus norvegicus 81 Sec24a ENSRNOG00000004563 ENSRNOT00000090475,ENSRNOT00000006356 1 2 2 80 10 37164357 37166077 GGCTTCTCTAGGCTGTATCTC 60 37164297 37164315 ACTGGATTGTGCTGATGGT 59 NA Rattus norvegicus 81 Nup43 ENSRNOG00000049505 ENSRNOT00000073528 1 1 2 80 1 1772310 1774172 GACTTACAGACCCTGTCCG 60 1774216 1774234 ACTGCTATAGGAAGGGCTG 59 NA Rattus norvegicus 81 Pik3c2b ENSRNOG00000029938 ENSRNOT00000090170 2 1 2 84 13 49880249 49880268 GACTCCTGAGATCACGAGTG 60 49880315 49881079 CACACTGGGATCCTTCTGG 60 NA Rattus norvegicus 81 Kcnip1 ENSRNOG00000005365 ENSRNOT00000007187 1 1 4 80 10 18942464 18942482 TTAAACTCATCACCGGGAC 57 18574679 18579601 GATCATCCTCGATCTTGTCTC 58 NA Rattus norvegicus 81 Ppp1r15b ENSRNOG00000028493 ENSRNOT00000037039 2 1 1 61 13 49935404 49935423 TCTGGAGAAAGATACACCCA 58 49937868 49937889 TCAGTAACTTCTTCAAGGAAGG 58 NA DesignNoJunction Rattus norvegicus 81 Zfp637 ENSRNOG00000023065 ENSRNOT00000038521 1 1 1 60 4 149880293 149880311 GATACGCGCAGAATGTAGC 59 149881907 149881927 GAAGAATCATACTTGTGGGCT 58 NA DesignNoJunction Rattus norvegicus 81 Rhobtb1 ENSRNOG00000000633 ENSRNOT00000000784 1 1 2 80 20 20644279 20650228 TTTGGTTCCACTTGTAGAACAG 59 20644220 20644239 ACTTCACCATCAATGCTCAC 59 NA Rattus norvegicus 81 Cacul1 ENSRNOG00000009954 ENSRNOT00000050617 1 1 2 82 1 281825476 281834164 GCCTAATGCAATGGGTTCAG 60 281825413 281825431 TTCAGATTCCACAGCTGGG 60 NA Rattus norvegicus 81 Pim3 ENSRNOG00000029698 ENSRNOT00000085835,ENSRNOT00000043461 3 2 2 100 7 129860680 129862038 CTACACTGACTTTGATGGCAC 59 129862100 129862118 GTACACCCAGAGACCACAC 60 NA Rattus norvegicus 81 Abca3 ENSRNOG00000050057 ENSRNOT00000079700 3 1 2 80 10 13756021 13756041 GAACCGAGTACTTTGAAGCTG 59 13756083 13756524 CCACTTGGAACACCTTGGA 60 NA Rattus norvegicus 81 Itpk1 ENSRNOG00000008051 ENSRNOT00000010656 1 1 2 88 6 126466347 126466365 TACAAGGTGTTTGTGGTGG 58 126460616 126466295 GATTCACGATCTGAGGTGC 58 NA Rattus norvegicus 81 Itpk1 ENSRNOG00000008051 ENSRNOT00000010656 2 1 2 88 6 126466347 126466366 GTACAAGGTGTTTGTGGTGG 59 126460617 126466296 ATTCACGATCTGAGGTGCC 60 NA Rattus norvegicus 81 Col26a1 ENSRNOG00000001422 ENSRNOT00000059530 3 1 2 83 12 22965194 22965673 GAGAAGACTCACAGGTCCC 59 22967757 22967775 TGGTCACCTTTGGAACCTG 60 NA Rattus norvegicus 81 Adgrl4 ENSRNOG00000033940 ENSRNOT00000047564,ENSRNOT00000088437 1 2 2 80 2 256692087 256692106 CAATTAGCTCAAACCCACCC 59 256692144 256693867 GCTTATCTGAGAGCTTTACATGAC 60 NA Rattus norvegicus 81 Fbxo42 ENSRNOG00000014305 ENSRNOT00000019195 2 1 2 158 5 159722271 159722289 TGAAGTCTGGGTCCTTGAC 59 159722826 159724024 GATGACACCATAGCGTTGG 59 NA Rattus norvegicus 81 Aldoa ENSRNOG00000052802 ENSRNOT00000088473,ENSRNOT00000087928,ENSRNOT00000080988 2 3 3 81 1 198230548 198230566 ACCAGAAGGCAGATGATGG 60 198230020 198230506 CCCTTATCTACCTTAATGCCCA 60 NA Rattus norvegicus 81 Mtmr1 ENSRNOG00000002697 ENSRNOT00000003638 3 1 2 83 18 312839 323148 GATTACAAGGCTCTGAGGG 57 312774 312792 AATGGCCTTAATGGACTCC 57 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076089,ENSRNOT00000010015 1 4 5 96 10 70164875 70164893 CATTGGCCATGTGTCTCAG 59 70163986 70164815 CTCTGAGTCAACGGACTGG 60 NA Rattus norvegicus 81 Zfp94 ENSRNOG00000019416 ENSRNOT00000088431 3 1 4 133 1 81144004 81144022 GATGGTGACCTTTAGGGAC 57 81124968 81143908 GTTGATACTCCACTGAGAGC 58 NA Rattus norvegicus 81 Sorbs1 ENSRNOG00000015658 ENSRNOT00000021347 1 1 5 89 1 259421071 259425633 GATAGAAAGAGCTCAGCAGTC 58 259412624 259412642 CTTCACTGCATGGAAGTCG 59 NA Rattus norvegicus 81 Ccdc148 ENSRNOG00000057740 ENSRNOT00000091777 1 1 2 80 3 45088988 45110853 AAGACATACGCAGTAACTTCC 58 45088928 45088946 GATTTCCGGGATACTGGTC 57 NA Rattus norvegicus 81 Mylk ENSRNOG00000002215 ENSRNOT00000085618,ENSRNOT00000067060 3 2 2 80 11 69018520 69019952 GCTAGAGTCTGAAGAAGATGTC 58 69018461 69018481 GAGAAGTAGGGCTTTACATGG 58 NA Rattus norvegicus 81 Sgms1 ENSRNOG00000012536 ENSRNOT00000087588,ENSRNOT00000079227,ENSRNOT00000054761,ENSRNOT00000079942 3 4 4 81 1 250693684 250697776 CCTGTTTATCAAGGAGTATTCCC 59 250693625 250693643 GAAGATTCCAACGACGCTG 59 NA Rattus norvegicus 81 Nfatc3 ENSRNOG00000054264 ENSRNOT00000087491 1 1 2 81 19 38091356 38111347 CACTTTAGATGATGTGAACGAG 57 38111389 38111407 ATCTCTGATCACCTCTGGG 58 NA Rattus norvegicus 81 Dnajc27 ENSRNOG00000003988 ENSRNOT00000088033 2 1 3 80 6 28524558 28524578 GGAAAGTTAAACGATGTCAGC 58 28524617 28530151 GTAGAATTCATTTCGGACAGCT 59 NA Rattus norvegicus 81 Exoc1 ENSRNOG00000002144 ENSRNOT00000090470 2 1 3 81 14 34135880 34142733 GGCGTGTTCATTAATGTGGA 59 34135818 34135839 GGTGAAAGTTCTCCATCATGAC 59 NA Rattus norvegicus 81 Exoc1 ENSRNOG00000002144 ENSRNOT00000091230 2 1 3 102 14 34177428 34177446 GACATCTTCACGCAACGAG 59 34176093 34177359 GTTCAGTTGTCACTGTGGC 59 NA Rattus norvegicus 81 LOC102547897 ENSRNOG00000015196 ENSRNOT00000020384 1 1 1 60 17 78739913 78739931 TGACATTGAGGACTCCTGG 59 78740513 78740531 GTTGAGGGTCCCTTGAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Lepr ENSRNOG00000023664 ENSRNOT00000044131,ENSRNOT00000050597 3 2 2 81 5 120639643 120639661 GTTCTGGCCATCAATTCCA 58 120639704 120642140 CAGCATTCACTTTACTCATGG 57 NA Rattus norvegicus 81 Ceacam6 ENSRNOG00000030331 ENSRNOT00000057600 2 1 2 90 1 81699327 81699586 CTTGACAATCCGGAAAGCC 59 81699640 81700299 ACTTCTTGCTCTTTCTGCG 59 NA Rattus norvegicus 81 Ceacam6 ENSRNOG00000030331 ENSRNOT00000034553 1 1 2 80 1 81689174 81689259 TCTGAATGGGTCTCTAGGC 58 81689303 81689321 TGGATCACTATGGAAGGCA 58 NA Rattus norvegicus 81 Ceacam6 ENSRNOG00000030331 ENSRNOT00000034553 2 1 2 81 1 81689173 81689259 ATCTGAATGGGTCTCTAGGC 59 81689302 81689321 TGGATCACTATGGAAGGCAC 60 NA Rattus norvegicus 81 Calu ENSRNOG00000006197 ENSRNOT00000090808,ENSRNOT00000008972 1 2 3 80 4 56638595 56638616 GTTTGATATGAATCAAGACGGC 58 56638655 56642823 TCTGGATCATCCAGGTAAGTG 59 NA Rattus norvegicus 81 Endov ENSRNOG00000003699 ENSRNOT00000078478 1 1 2 80 10 108639166 108639184 GAGGTACCTTTCCTGGTGG 59 108639228 108639428 ATCCACAAGAAGGACCTGG 59 NA Rattus norvegicus 81 Rps19 ENSRNOG00000037897 ENSRNOT00000027246 1 1 1 63 1 81751482 81751500 TAACCAGCAGGAGTTCGTC 59 81751788 81751806 GACTTTCAGCTTCCCAGAC 58 NA DesignNoJunction Rattus norvegicus 81 Bcl2l11 ENSRNOG00000016551 ENSRNOT00000022596 2 1 2 89 3 120729678 120729864 CAGAATCGCAAGACAGGAG 58 120729916 120729935 GATAATGGTTGAAGGCCTGG 59 NA Rattus norvegicus 81 Actn4 ENSRNOG00000020433 ENSRNOT00000027773,ENSRNOT00000089305 3 2 3 85 1 87097353 87097372 GTCACCAACCTAAACAATGC 58 87096599 87097305 GTGTTCACGATGTCCTCAG 58 NA Rattus norvegicus 81 Stam ENSRNOG00000060817 ENSRNOT00000077368,ENSRNOT00000087129 1 2 2 80 17 81222922 81222942 GTTGAATACTGCTGAGGACTG 59 81222984 81233695 CAATCTTTAGGCCCTGTGC 59 NA Rattus norvegicus 81 Hif1a ENSRNOG00000008292 ENSRNOT00000049725 3 1 2 95 6 96848891 96848910 CTTAAGAAAGAGCCCGATGC 59 96848968 96849571 TTCAGTTTCCGTGTCATCG 58 NA Rattus norvegicus 81 Srgn ENSRNOG00000000394 ENSRNOT00000000443,ENSRNOT00000078140 3 2 2 86 20 32124114 32133340 CAGTTCAAGGTTATCCTGCTC 59 32124048 32124066 TCTCCTCAATGCAGTTTGC 59 NA Rattus norvegicus 81 RT1-A3 ENSRNOG00000059770 ENSRNOT00000048076 2 1 1 60 20 3791761 3791780 TTCATTTCCTGTACCTGTCC 57 3791716 3791736 ATAGGTTTCCATGTTGGAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Sec24c ENSRNOG00000009042 ENSRNOT00000012270,ENSRNOT00000084350,ENSRNOT00000090352 2 3 3 80 15 4040901 4041094 CAGCTGTATCAATGATGTGCC 60 4040841 4040859 GGACGGTCATAAGCATCCA 60 NA Rattus norvegicus 81 Arpp19 ENSRNOG00000023086 ENSRNOT00000030221 3 1 1 125 8 81963867 81963886 AAGGTATCCTCATTTGGGAC 57 81968458 81968477 TGCTTGTTCTTCATCTTTGC 57 NA DesignNoJunction Rattus norvegicus 81 Clec4a ENSRNOG00000010045 ENSRNOT00000039855,ENSRNOT00000087933,ENSRNOT00000077840 1 3 3 80 4 156063902 156064911 GGAAGAACAGGACTTCATCAC 59 156064953 156064971 TGTCGATGACCTGAATCCC 59 NA Rattus norvegicus 81 Htr6 ENSRNOG00000049761 ENSRNOT00000070865,ENSRNOT00000078028 1 2 2 65 5 157503970 157503988 TTTGTGGCCAACATAGCTC 59 157503729 157503747 TGTGAGGACATCGAAGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Masp1 ENSRNOG00000001827 ENSRNOT00000047678,ENSRNOT00000002507 3 2 2 80 11 80771223 80772105 CTACAAAGTGCTAAAGGATAACGAG 60 80772141 80772161 ATCTTGTTACTCCATGCACCA 60 NA Rattus norvegicus 81 Ss18 ENSRNOG00000016800 ENSRNOT00000086335 2 1 2 83 18 6029721 6029739 CTTACCAAGGACCACCTCC 59 6026888 6029677 TAATTAGGATACTGAGGCCCTG 59 NA Rattus norvegicus 81 Eln ENSRNOG00000001469 ENSRNOT00000040069 1 1 2 121 12 24978531 24978549 CTCTTGCTCAACCTCCTCC 60 24986592 24988345 ATACCAGCTCCTGGATAATAGAC 59 NA Rattus norvegicus 81 Mcpt1l3 ENSRNOG00000031792 ENSRNOT00000038253,ENSRNOT00000043182 1 2 3 166 15 35001892 35002421 GAGGAGATTGTTGGTGGTG 58 35002549 35003086 GTGACTGTGATTTCTCTTCCA 58 NA Rattus norvegicus 81 Dlgap1 ENSRNOG00000016196 ENSRNOT00000022351,ENSRNOT00000090512 1 2 3 102 9 118843850 118920880 CCAGTACCTACAGGTTCCC 59 118920946 118920964 TTTGATGTAGCTGCCACTG 58 NA Rattus norvegicus 81 Clca5 ENSRNOG00000013334 ENSRNOT00000017824,ENSRNOT00000083535 3 2 3 80 2 250763783 250765226 TGTCGGATATGACAGGAGG 58 250763721 250763739 AGGAAATCCCACTGAAAGC 58 NA Rattus norvegicus 81 Tle4 ENSRNOG00000013239 ENSRNOT00000087140 3 1 3 107 1 231498139 231498158 GTCATTCCTTTCCTGTCCCA 60 231458533 231482703 GAGTTGTTGCCCAATGATGG 60 NA Rattus norvegicus 81 Slc6a12 ENSRNOG00000013547 ENSRNOT00000018821,ENSRNOT00000089482 3 2 2 80 4 153927718 153930269 TGGAACACAGAACATTGCG 59 153930312 153930331 TGGTGAGGTGAAGTTCTCAG 59 NA Rattus norvegicus 81 AABR07019399.1 ENSRNOG00000010144 ENSRNOT00000013475 2 1 1 60 15 104191399 104191419 ATGATGCTTACGTTTCACAGG 59 104191357 104191376 CTCTCAGGTCCTCCTTTGTC 60 NA DesignNoJunction Rattus norvegicus 81 Tgds ENSRNOG00000009661 ENSRNOT00000088909 3 1 2 80 15 103324863 103324881 TGGACCACATCAGTATCCA 58 103323365 103324155 CCGTGAATACAGCATTTCCT 58 NA Rattus norvegicus 81 Reck ENSRNOG00000014863 ENSRNOT00000060264 2 1 2 118 5 59411357 59413636 CAATTGCTAAGATTGAGGCCT 59 59413716 59413734 CACCTGGGAGATGATGAGG 59 NA Rattus norvegicus 81 Cd160 ENSRNOG00000000097 ENSRNOT00000000109,ENSRNOT00000073913 1 2 2 84 2 198942711 198942729 CAAATCCTGATGGCACCTG 59 198939449 198942665 GAATACATCCACCATGTTGGA 58 NA Rattus norvegicus 81 Cd160 ENSRNOG00000000097 ENSRNOT00000000109 3 1 2 80 2 198936176 198936194 ACTCTCAGTTCAGGCTTCC 59 198935136 198936134 TTTGTACTGTGCTTGAAAGGC 60 NA Rattus norvegicus 81 Rims2 ENSRNOG00000004201 ENSRNOT00000006393 1 1 4 81 7 78559014 78574177 AAGATGAAGGAGAAGGAGGAG 59 78574220 78574238 CTCATCTCCACTGCTAGCC 60 NA Rattus norvegicus 81 Acsm5 ENSRNOG00000031211 ENSRNOT00000046025 3 1 2 186 1 189262340 189262358 GAGCACATATGGACGAGGA 59 189262769 189264569 ATAAACGCCTTTACCACCTC 58 NA Rattus norvegicus 81 Clec7a ENSRNOG00000054251 ENSRNOT00000091552,ENSRNOT00000077793 1 2 2 80 4 163220741 163220761 GTCTATCTCGCAATCAGAGTG 58 163217926 163220701 TTCTGACTTGAAACGAGTTGG 59 NA Rattus norvegicus 81 Calcr ENSRNOG00000010053 ENSRNOT00000013910 1 1 2 83 4 28646747 28646765 AACTGTCACCACCCTTACC 59 28637792 28646703 GCAGAATCTTGCAACTTATCAC 58 NA Rattus norvegicus 81 Sdk2 ENSRNOG00000024711 ENSRNOT00000065145 2 1 2 82 10 102344278 102344296 CTCTACGAAGGGCTGAGAG 59 102340958 102344233 TTGGTCAGATAGGTGAGCTC 59 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000028249 2 1 7 87 1 83747902 83749336 CTCTGGATTCCTCAGACTACC 59 83749415 83749433 AATGTGGCTATGGTGAAGC 58 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000090071 2 1 7 80 1 83654922 83654941 CCCACCTTCTATCTGACGG 59 83654988 83655009 GAACTCTTTGTCCTCATAGTCG 59 NA Rattus norvegicus 81 RGD1307830 ENSRNOG00000002473 ENSRNOT00000059984 3 1 2 81 13 67600896 67600917 TTCACGTTAACATTCACATCCC 59 67600169 67600856 CGTGTAAGTCCACTCTTTGTG 59 NA Rattus norvegicus 81 Cyb5rl ENSRNOG00000009148 ENSRNOT00000012201 3 1 2 97 5 126670830 126671168 CAATAAAGACCTTGAGGGCTG 59 126671227 126671245 GATAGGTGTCCCTGGTGAC 59 NA Rattus norvegicus 81 Sema5a ENSRNOG00000011977 ENSRNOT00000016506 1 1 2 157 2 85744234 85753809 CAGGGAGGAAAGATACTGCA 59 85753929 85753947 CATTGCATCCTGCACAGTC 60 NA Rattus norvegicus 81 Pde4dip ENSRNOG00000018220 ENSRNOT00000087026 3 1 3 81 2 199870561 199870579 GACCAGGACCCATGATGTC 60 199868971 199869697 CTGAAGGATTTCATCTTGGCTG 60 NA Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000008074 3 1 5 80 8 6140371 6152369 GTTATTTCGGCAGGAATTAGCT 59 6140312 6140332 GAAGACACTGCATTCTGAGTC 59 NA Rattus norvegicus 81 Nap1l4 ENSRNOG00000020615 ENSRNOT00000087961 2 1 2 90 1 216728558 216728576 AACCATCACCAAGCAAGTG 59 216725506 216726180 ATCTTCATCCAGAGATTCTCCA 59 NA Rattus norvegicus 81 Cacna1e ENSRNOG00000002863 ENSRNOT00000090544,ENSRNOT00000003869 2 2 3 81 13 71983311 71983329 AACCAGAAACATGCACTGC 59 71979089 71983269 TTCTGTCTCTTTCAATGGAAGG 58 NA Rattus norvegicus 81 Gabra2 ENSRNOG00000002349 ENSRNOT00000064779,ENSRNOT00000003197 1 2 2 80 14 39750044 39754679 TTTGGAAGCTATGCTTACACG 59 39754721 39754739 AGGAGCAACCTGAACAGAG 59 NA Rattus norvegicus 81 Mical2 ENSRNOG00000016244 ENSRNOT00000021858 1 1 2 80 1 177154017 177154037 GTCAAGTACATGGCCAATCAG 59 177154078 177166146 CAGGGATTCCTGTTTCAAGG 59 NA Rattus norvegicus 81 Osbpl9 ENSRNOG00000033593 ENSRNOT00000065280 2 1 2 82 5 128839323 128839343 GGACTGCTCTCCTACTATACG 59 128796478 128813585 ATCACAGCTCCTCTGAGTC 59 NA Rattus norvegicus 81 Usp9x ENSRNOG00000003261 ENSRNOT00000080651 2 1 2 80 X 10527758 10527776 CATGAATCACCTCCACCTG 58 10526449 10527715 ATGCACATGGTTATTCTGCT 58 NA Rattus norvegicus 81 Col6a3 ENSRNOG00000019648 ENSRNOT00000077924 3 1 5 85 9 97989318 98004382 GTTTGCTCAGGGTTCACAC 59 97989251 97989269 AGAAGGCTAAAGACAGCCA 59 NA Rattus norvegicus 81 Irf5 ENSRNOG00000007437 ENSRNOT00000010001 3 1 2 83 4 56813516 56814028 AGGAAGATGAAGAGCTCCA 58 56814248 56814266 AATAGGGTGCTATGGGAGG 58 NA Rattus norvegicus 81 Ttc39a ENSRNOG00000009519 ENSRNOT00000013459 3 1 2 81 5 129052071 129052347 TTTACGATTGTGAAGGGTCTC 58 129052390 129052408 GTAAGGAAGAGGTCCAGGG 59 NA Rattus norvegicus 81 Dsg1 ENSRNOG00000016853 ENSRNOT00000061344,ENSRNOT00000038635 2 2 3 80 18 12032958 12032978 TTCCAGAATGTTCTGATGGAG 58 12033019 12033404 TGGTGGTTATACCATCATGG 57 NA Rattus norvegicus 81 Glrx3 ENSRNOG00000016227 ENSRNOT00000022406,ENSRNOT00000083316 3 2 2 80 1 209796978 209797090 TATACTGGAGGATGAAGAAGTGC 60 209797129 209797148 CCTCTCACATACAGCTGAGG 60 NA Rattus norvegicus 81 Tnnt2 ENSRNOG00000033734 ENSRNOT00000047682 1 1 3 87 13 52677859 52677877 AGGAAGGCTGAAGATGAGG 59 52677928 52679429 TCTTCCGCTCTGTCTTCTG 59 NA Rattus norvegicus 81 Dffa ENSRNOG00000013603 ENSRNOT00000089179 1 1 2 80 5 165933330 165934294 AGTCAGGATTTAGAGTCGGT 58 165934336 165934355 CTCTGCCTTCTTTATGTCCC 58 NA Rattus norvegicus 81 Dsg3 ENSRNOG00000016632 ENSRNOT00000091816,ENSRNOT00000022584 2 2 2 80 18 15673312 15674181 ACCCAATTGCCAAGATCAC 58 15673250 15673268 GCTGATCAATTCCCACTCC 58 NA Rattus norvegicus 81 Chrna7 ENSRNOG00000010853 ENSRNOT00000051883 2 1 2 80 1 123914248 123959439 GAGAAGATCTAAGAGTCAGTGCT 60 123914190 123914208 AATGCCCAGATGCATTCAC 59 NA Rattus norvegicus 81 Ndufa1 ENSRNOG00000040005 ENSRNOT00000061493 1 1 1 60 X 124516612 124516631 CATCCACAAGTTCACCAACG 60 124515503 124515523 CCATTGGTAATGAACTCGAGC 60 NA DesignNoJunction Rattus norvegicus 81 Hltf ENSRNOG00000000082 ENSRNOT00000064828 1 1 2 108 2 104882268 104885893 AGGTACATCTGTGATGGAGAG 59 104885960 104890346 AATCTGGTCAATCCAATTGCTC 59 NA Rattus norvegicus 81 Pfas ENSRNOG00000005193 ENSRNOT00000080769 2 1 2 80 10 55585297 55585315 ATGATGTTGCTCGGGAGTC 60 55584440 55585255 TAGAGAAATTCAGCCTGGGTC 60 NA Rattus norvegicus 81 Cast ENSRNOG00000010286 ENSRNOT00000062052 1 1 5 81 2 1506288 1506306 TCCTTCTGCTGATGGAGAG 59 1501707 1506243 CACGCCTGACTTAACAACC 59 NA Rattus norvegicus 81 Phkg2 ENSRNOG00000018725 ENSRNOT00000087142,ENSRNOT00000025419 2 2 2 81 1 199019942 199026207 CATCATTGGCAGAGGAGTG 58 199026250 199026270 CATGATCTTCACTGCAAACTC 58 NA Rattus norvegicus 81 LOC679739 ENSRNOG00000049394 ENSRNOT00000075959 2 1 3 148 1 32573327 32573345 GGAGAAGATCACGCATACC 58 32574330 32576093 CGACAAATACTCTTTCTGACGA 59 NA InUTR Rattus norvegicus 81 Dysf ENSRNOG00000032788 ENSRNOT00000085765 3 1 2 83 4 115729480 115731510 GGAATGAGGGCTTTGAGTG 59 115731557 115731575 TCTCATGGTCCTTGACCAC 59 NA Rattus norvegicus 81 Slc4a8 ENSRNOG00000028879 ENSRNOT00000040890,ENSRNOT00000065379 3 2 2 122 7 142459198 142459216 TCATGGACCTCTGCTTCTC 59 142459302 142461326 ACATCTTCTCAGCCTCCTC 59 NA Rattus norvegicus 81 Itgb4 ENSRNOG00000005580 ENSRNOT00000065339,ENSRNOT00000086747 2 2 2 80 10 104539215 104539922 GAGCTTAAGAAAGCGGAAGAG 59 104539964 104539982 CACGGTGTAGCTGTAAGTG 58 NA Rattus norvegicus 81 Slit2 ENSRNOG00000003840 ENSRNOT00000005477 2 1 2 80 14 67165738 67166932 CAGAGTTCTTCAGCTCATGGA 60 67165678 67165701 AGTCTTTCTAGCTCCTTAAGATCC 60 NA Rattus norvegicus 81 Slc6a5 ENSRNOG00000031662 ENSRNOT00000041950,ENSRNOT00000089693 1 2 2 80 1 105311391 105314763 ACAACTGCTACAGGGACAC 60 105314806 105314825 CAGAGAAGATGACGAACCCA 60 NA Rattus norvegicus 81 Egfl6 ENSRNOG00000004275 ENSRNOT00000068337 2 1 2 81 X 29476583 29476604 GTAAATGAAGCAGAGGATTTGG 58 29476646 29485389 AACCCACATCTTTGTGCTC 58 NA Rattus norvegicus 81 Pde4b ENSRNOG00000005905 ENSRNOT00000008278,ENSRNOT00000068158,ENSRNOT00000007738 1 3 3 80 5 122132555 122132575 GAACATTGCGACATCTTTCAG 58 122132615 122132726 TGCTAACACCATGTCAATCAC 59 NA Rattus norvegicus 81 Pde4b ENSRNOG00000005905 ENSRNOT00000008278 1 1 3 80 5 121953216 122019314 TGGATATGCTTTGATGTGGA 57 122019357 122019375 CAGTCCTGAAGAAGAGCTG 58 NA Rattus norvegicus 81 Med16 ENSRNOG00000011315 ENSRNOT00000080089,ENSRNOT00000015257 3 2 2 104 7 12621668 12623745 ACGTAGAGAAGTCTGGTGC 59 12623813 12623831 CAATCCAACCCTCCATTGG 59 NA Rattus norvegicus 81 Atg4d ENSRNOG00000047625 ENSRNOT00000075174 2 1 2 81 8 22294801 22297328 GACTGCACAGTGTACAAGG 59 22297372 22297391 GGATGACAACAGACTTCCAC 59 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000064785,ENSRNOT00000029878,ENSRNOT00000029865,ENSRNOT00000060292,ENSRNOT00000000814 1 5 5 80 13 55062935 55064383 GCAGCTTTGAGCAATACCA 59 55062873 55062892 TTGCTTTCTTCACTTGTCCA 58 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000064785,ENSRNOT00000060292 2 2 5 83 13 55114475 55115290 GATATCTCCTCAGGTGCCA 58 55114410 55114429 TATTTCTGTGCTTGTGGTGG 59 NA Rattus norvegicus 81 LOC498836 ENSRNOG00000025687 ENSRNOT00000028924 1 1 1 113 18 25370439 25370458 CATCAGTAAATGCCATGGGA 58 25369987 25370007 CATAGGAACATGTTGTGAAGG 57 NA DesignNoJunction Rattus norvegicus 81 Iws1 ENSRNOG00000014630 ENSRNOT00000061011 1 1 2 80 18 24874141 24874160 CCAATGCCATCAAACAAGGA 59 24874201 24874534 TTTAAGAATACCAGGCCTGGA 59 NA Rattus norvegicus 81 Ctnna3 ENSRNOG00000000373 ENSRNOT00000057950,ENSRNOT00000084660 1 2 2 80 20 25064982 25120704 TCATCGTGTCAGCTTTGGA 59 25064920 25064938 TCACTGTTTGCACTACAGC 58 NA Rattus norvegicus 81 Spint2 ENSRNOG00000020636 ENSRNOT00000028006 2 1 2 84 1 87203127 87206386 TGGTATCACTGAGAACACCA 58 87202126 87202144 AGAATCCTGCTTTCTGGGA 58 NA Rattus norvegicus 81 Myo7b ENSRNOG00000015035 ENSRNOT00000021405,ENSRNOT00000090390 3 2 2 80 18 24759521 24760503 TTGAGAAGGAAGAGGACCTG 59 24759460 24759480 CAGCATTACTCTTCACTGTGG 59 NA Rattus norvegicus 81 Slc7a3 ENSRNOG00000004133 ENSRNOT00000076910,ENSRNOT00000076336 2 2 3 80 X 70974260 70974279 TTGTCCAGTCAACTCCATCC 60 70973770 70974220 GTTAGTAGTACAGCAAGCAGTG 59 NA Rattus norvegicus 81 Mctp1 ENSRNOG00000013282 ENSRNOT00000064743 3 1 2 80 2 3780620 3809223 GGGATGTGTTTCAGACCCA 60 3809265 3809285 TGATGCTGACTATTCCTCTCC 59 NA Rattus norvegicus 81 Spata5 ENSRNOG00000017462 ENSRNOT00000023584 2 1 2 81 2 124205976 124340800 TAGACAAGATCATAGCAGTCTG 57 124340840 124340860 CTCTTCATAATGCAGTCAGCT 58 NA Rattus norvegicus 81 Rab24 ENSRNOG00000016539 ENSRNOT00000022221,ENSRNOT00000077031 3 2 3 80 17 9838224 9838350 CAATTGTCTGTTATGACCTCAC 58 9838391 9838409 CTTCTAAACTGCGGAGCTC 58 NA Rattus norvegicus 81 Trerf1 ENSRNOG00000022598 ENSRNOT00000088713 2 1 2 103 9 15695793 15695811 CTCCATCTGCCTGAAGGAG 60 15694253 15695727 CTCCTTCCTCCTGTTTGAGG 60 NA Rattus norvegicus 81 Unc13d ENSRNOG00000007439 ENSRNOT00000010466 2 1 2 81 10 104625562 104625580 CTGGACACTGTGGAGTCTG 60 104625365 104625521 GAGCTTCTTTAAAGATCCTCCTG 59 NA Rattus norvegicus 81 Dnajc7 ENSRNOG00000017781 ENSRNOT00000080521,ENSRNOT00000024321 1 2 2 80 10 88505106 88505127 AGAAGACTGTACAAATGCAGTG 59 88500562 88505066 GTGTCCATGTAACACTGAGC 59 NA Rattus norvegicus 81 Trmu ENSRNOG00000016465 ENSRNOT00000022511 1 1 2 84 7 126767983 126768003 CATGTGCTTCAGAAGAAAGAG 57 126769143 126769234 GCTGCAAATACTGAAGAAGG 57 NA Rattus norvegicus 81 Mreg ENSRNOG00000015774 ENSRNOT00000085619 3 1 2 115 9 79523411 79530240 TGTGTCAGTGGTAACAATCC 58 79523315 79523333 CTGTCATCATCTGCCTCTG 58 NA Rattus norvegicus 81 Pnldc1 ENSRNOG00000023140 ENSRNOT00000076225 3 1 3 82 1 48051106 48051126 TTAAGCAGAACATCCATAGCC 58 48051170 48052272 GAAACGCAGTTCCTTCCAG 59 NA Rattus norvegicus 81 RGD1562608 ENSRNOG00000029466 ENSRNOT00000078870 3 1 2 60 18 17556861 17556880 CCTAAACCTGGAAGTGACTC 58 17606017 17606036 CAAGCCTCTTCTGAAGACTG 58 NA DesignNoJunction Rattus norvegicus 81 Taok2 ENSRNOG00000019964 ENSRNOT00000081291 2 1 3 81 1 198311157 198311180 GAAGAAGATACTATTCCAAGAGGC 59 198310958 198311119 CATGTAAGGTTCTGCTTCCTC 59 NA Rattus norvegicus 81 Taok2 ENSRNOG00000019964 ENSRNOT00000064985,ENSRNOT00000085304 1 2 3 80 1 198304450 198307535 CCAAGAGCCTCAAATCAAAGG 60 198304390 198304408 CCTTGTATTGCCGTGTCTG 59 NA Rattus norvegicus 81 Decr2 ENSRNOG00000050424 ENSRNOT00000027593 2 1 3 80 10 15461981 15463368 TCACATCAGCAGGAATGTC 58 15461919 15461937 CTGCTCTGAAACCATAGCT 57 NA Rattus norvegicus 81 Chd1 ENSRNOG00000014434 ENSRNOT00000019358 1 1 2 80 1 57753898 57753917 ACCCTACTCCTCATTTAGCA 58 57753956 57755154 CTGTCACTATAGTACCTACTGTC 57 NA Rattus norvegicus 81 Ttbk1 ENSRNOG00000018416 ENSRNOT00000080104,ENSRNOT00000024824 3 2 2 80 9 16869175 16869193 TCCGAGTTCCATCTCTTCC 59 16869237 16871956 CACCGACATGATCAACTGG 59 NA Rattus norvegicus 81 Ppp6r2 ENSRNOG00000026425 ENSRNOT00000011070 2 1 2 121 7 130250588 130250607 ACATCAGTGAAGTCATCCGA 59 130251952 130252896 GTACTCAGAGAAGGCCAGG 59 NA Rattus norvegicus 81 Erap1 ENSRNOG00000009997 ENSRNOT00000013625,ENSRNOT00000080222 3 2 2 80 2 1446266 1446782 AACTTCAGTGGCTTCTAGACC 60 1446821 1446842 CAATGAGCGTGAGAATATGTGG 60 NA Rattus norvegicus 81 Egr1 ENSRNOG00000019422 ENSRNOT00000026303 1 1 1 85 18 27658070 27658088 CGCTTTCAATCCTCAAGGG 59 27658807 27658827 CGTTATTCAGAGCGATGTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Uchl5 ENSRNOG00000003545 ENSRNOT00000004881 3 1 2 88 13 60595514 60595534 AATGGCCATTGTATCTGACAG 59 60595584 60596663 TATCCATGGGTTCCTCCTC 58 NA Rattus norvegicus 81 Gltscr1l ENSRNOG00000016229 ENSRNOT00000021762,ENSRNOT00000091809 3 2 2 96 9 16303758 16304242 CCTCGATCTTATTGGAGACCC 60 16304379 16304397 AGAATACCCTGCGTTCGTC 60 NA Rattus norvegicus 81 Azin2 ENSRNOG00000051507 ENSRNOT00000080340 2 1 2 84 5 147133881 147133900 CTTTCCTGGCTTAGAGGGAG 60 147131973 147133335 AGCAGGGTGATAGAAAGGG 59 NA Rattus norvegicus 81 Brd4 ENSRNOG00000006770 ENSRNOT00000008963,ENSRNOT00000091368 2 2 2 81 7 14239211 14239229 TCTCATCCTCTGAGTCGGA 59 14230518 14239166 GACTTGGGAGCCATCTCTG 60 NA Rattus norvegicus 81 Dnaja3 ENSRNOG00000003855 ENSRNOT00000085230,ENSRNOT00000081596 1 2 3 80 10 11075536 11075558 CTTTGGAGAGTTCTCATCTTCTC 59 11073740 11075498 GTCAACTCCATGATGTACTCC 58 NA Rattus norvegicus 81 Mknk1 ENSRNOG00000010381 ENSRNOT00000091543 2 1 2 110 5 134706538 134708483 GAATAGACCAGAGATGGGCA 59 134708556 134708574 TCAAACTTCCCTGGCAGAG 60 NA Rattus norvegicus 81 Apc ENSRNOG00000020423 ENSRNOT00000027691,ENSRNOT00000090264 2 2 2 80 18 27097239 27097258 ATCATTGAAAGTGGAGGTGG 58 27097299 27098769 TCTTAGGATTTGTCTGTGGTC 58 NA Rattus norvegicus 81 Zfp707 ENSRNOG00000043439 ENSRNOT00000078368 1 1 2 80 7 117000764 117001093 GAATGAACTGGGATGCTGTG 59 117001136 117001154 CATTTGTCAACCCATGGCT 59 NA Rattus norvegicus 81 Reln ENSRNOG00000021441 ENSRNOT00000010521,ENSRNOT00000061858 1 2 2 80 4 9676047 9678433 CAGTTCAAGCTAAACATCGGG 60 9678473 9678493 GCCAGCATCATGTGAATACTG 60 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000030154 ENSRNOT00000051252,ENSRNOT00000088209,ENSRNOT00000083686 3 3 3 80 5 134206577 134206596 ACCCTGACTATGTGAAGGTG 59 134205120 134205845 AACCATAACCAATCCAGGGAG 60 NA Rattus norvegicus 81 Fgd3 ENSRNOG00000016225 ENSRNOT00000089310 1 1 2 89 17 15782621 15782642 CACATTCATCATAACAGGACGA 59 15784433 15785054 GCCTGAATGACCTGAATCC 58 NA Rattus norvegicus 81 F13b ENSRNOG00000012613 ENSRNOT00000080335 3 1 3 81 13 56607262 56607280 GATCCAGGGTTCAGATGCA 60 56610493 56612912 TACCTTCTCCTTCTCTTCCAC 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000086685 2 1 18 98 1 43454950 43507138 GGAAGTTACCTCAGATACACCA 59 43507197 43507215 AAAGGGCAGTGTACTGGTC 60 NA Rattus norvegicus 81 Tmem220 ENSRNOG00000003367 ENSRNOT00000064764,ENSRNOT00000004516 3 2 2 89 10 53575897 53575915 CCTGAATGAGGAAGAAGGC 58 53576930 53579194 ACTGAATTCTTGGATGAGCTG 58 NA Rattus norvegicus 81 Arel1 ENSRNOG00000004382 ENSRNOT00000006240,ENSRNOT00000086545 1 2 2 80 6 108652197 108652427 TGTCCATTCATGAGCTTGGT 60 108652136 108652154 TCTGTCTGTTGGAGGTCAC 59 NA Rattus norvegicus 81 Gtpbp2 ENSRNOG00000019332 ENSRNOT00000026195 1 1 2 187 9 17206856 17206874 AGTATCGGAACTGTTCGGC 60 17204707 17206705 TTCCATCTTCAGCCTCTGG 59 NA Rattus norvegicus 81 Gbe1 ENSRNOG00000051232 ENSRNOT00000084765 3 1 2 82 11 7413951 7413970 AAATCATTTGACGCACACGA 59 7416235 7417631 TGGGTTGTATAGAAGCTGGAG 59 NA Rattus norvegicus 81 Pqbp1 ENSRNOG00000007766 ENSRNOT00000010536,ENSRNOT00000077268 3 2 2 140 X 15348426 15451595 CAAACATCTGGAGCCAGAG 58 15451698 15451891 TAAGGGAGTCCACAAGAAGG 59 NA Rattus norvegicus 81 Hsp90ab1 ENSRNOG00000019834 ENSRNOT00000026920 1 1 2 84 9 17819195 17819386 TAATGCTTCTGATGCCCTG 58 17819434 17819452 AATCTTCAGCTCTTTCCCG 58 NA Rattus norvegicus 81 Scube2 ENSRNOG00000013123 ENSRNOT00000086349 2 1 2 102 1 174440200 174440222 TTATGTCCAAACACCTTCCA 57 174440117 174440135 CATTCCAGGCTTCTGAGAC 58 NA Rattus norvegicus 81 Ncf2 ENSRNOG00000028016 ENSRNOT00000066331 2 1 4 80 13 70240799 70240819 TGGCAACAAACATGAAGTCTG 60 70240861 70245797 AGGTAGGACACCTCTTCCA 59 NA Rattus norvegicus 81 Nudt6 ENSRNOG00000017420 ENSRNOT00000084825 3 1 3 267 2 124149565 124149583 GTTGTTCTCGGCTTTGCTC 60 124134789 124138858 GCTGTGTCTCCAATATCTTCTC 59 NA DesignRelaxed Rattus norvegicus 81 Nudt6 ENSRNOG00000017420 ENSRNOT00000023437 3 1 3 83 2 124145914 124145932 CTCTGTGGTTGGGAGAAGG 60 124141465 124145869 TAACATCAAATACGGCACCTG 59 NA Rattus norvegicus 81 Trappc9 ENSRNOG00000027569 ENSRNOT00000038172 2 1 2 80 7 114159083 114166355 ATCCATCACAAGGATCTAGGAC 59 114154860 114154881 CTCCAGAGTACTTGAAGTTCAG 58 NA Rattus norvegicus 81 Mavs ENSRNOG00000025295 ENSRNOT00000090764,ENSRNOT00000034146 2 2 2 80 3 123780904 123782334 GTGACCAGGATCGATTACG 58 123782378 123782396 GCTGGAGCGTATTGAAGAG 58 NA Rattus norvegicus 81 Plk4 ENSRNOG00000011654 ENSRNOT00000016946 1 1 2 83 2 127688689 127688708 AAAGCTGGAATGGTACAGAG 58 127688751 127688848 ATTATAGAGCTCCAAGACAGAG 57 NA Rattus norvegicus 81 Tpd52l1 ENSRNOG00000021478 ENSRNOT00000078841 3 1 2 90 1 28567844 28569651 TCTATTGGGTACTCCATCCG 58 28572307 28572325 TTGTCTCAACCCTCTCCTC 58 NA Rattus norvegicus 81 Dnajc8 ENSRNOG00000013255 ENSRNOT00000017740 1 1 2 80 5 150725758 150728271 CTTCTACAGTGAGGTGAAGCA 60 150728309 150728331 GGACGAGTCAATCTTTCAATCTG 60 NA Rattus norvegicus 81 Rgl3 ENSRNOG00000013027 ENSRNOT00000091027,ENSRNOT00000017493 3 2 2 99 8 22992733 22992751 TTTCTCTTCCCTACGAGCG 59 22992569 22992670 AACAGACAGTGGTTCCCTG 60 NA Rattus norvegicus 81 Klra2 ENSRNOG00000031515 ENSRNOT00000035522 1 1 2 82 4 165457994 165458012 TAAGTCTCCAGGGTTGCAG 59 165457314 165457948 ATTCGGAGTGAGCTCTGTG 60 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000042790 2 1 6 80 9 17350294 17350312 GTTCGAGGAAAGGGAAAGG 58 17350356 17353788 CCTTGGCTTGTCACATACG 59 NA Rattus norvegicus 81 Zfp386 ENSRNOG00000004268 ENSRNOT00000091884,ENSRNOT00000005648 3 2 2 101 6 143909939 143914274 GTCTCTGTGGCTCTTTCTC 58 143914339 143914357 CTTAAGGCCACAACTTCCA 58 NA Rattus norvegicus 81 Ankrd27 ENSRNOG00000052814 ENSRNOT00000081465 2 1 2 88 1 91904994 91905012 AAACAACGTCGTTGTCGTC 59 91906624 91906646 GGTTGTACATTGTTGGGTTCC 60 NA Rattus norvegicus 81 Tsen15 ENSRNOG00000002352 ENSRNOT00000087713 1 1 2 80 13 69766153 69766172 CCATAGTGGAGTCAGATTCC 57 69765630 69766113 GAGAAATATTCTGAGGGTCTGG 58 NA Rattus norvegicus 81 RT1-A1 ENSRNOG00000038999 ENSRNOT00000041590,ENSRNOT00000089306,ENSRNOT00000080900 2 3 5 98 20 5416878 5416898 TTTATGTTGTCCTTGGAGCTG 59 5416957 5417153 CTTTCCCACCTGTGTTTCTC 59 NA Rattus norvegicus 81 RT1-A1 ENSRNOG00000038999 ENSRNOT00000041590,ENSRNOT00000089306,ENSRNOT00000080900 3 3 5 99 20 5416877 5416898 ATTTATGTTGTCCTTGGAGCTG 59 5416957 5417153 CTTTCCCACCTGTGTTTCTC 59 NA Rattus norvegicus 81 Oas1a ENSRNOG00000001369 ENSRNOT00000038426,ENSRNOT00000048450 3 2 3 81 12 41202605 41205271 GATGTCCTAGGTCATGTTAGC 58 41205314 41205332 CCAGGGAGATACATTCGGA 58 NA Rattus norvegicus 81 Ing5 ENSRNOG00000018988 ENSRNOT00000025683 1 1 2 80 9 100932613 100934934 CACTATCTGGACAGCATTGAG 59 100934975 100934994 TGTTCTCTGGTCTAGCTCTC 58 NA Rattus norvegicus 81 Dmwd ENSRNOG00000014984 ENSRNOT00000071916 3 1 2 80 1 79982863 79982886 GAGGTCTTAGAATATTGTCCTCCT 59 79983169 79983195 AGGAGAGGAAGGAAGAGCT 59 NA Rattus norvegicus 81 Rgs8 ENSRNOG00000002369 ENSRNOT00000083366,ENSRNOT00000003239,ENSRNOT00000088329 1 3 3 80 13 71132315 71132333 GCAAAGCTAGTCACCAAGG 59 71132375 71136853 GAAATCGATATTCACCTCCCG 59 NA Rattus norvegicus 81 Abcb8 ENSRNOG00000008557 ENSRNOT00000089817 3 1 2 83 4 7301399 7303968 GTACAGAGGTCTATGGCCAG 59 7301053 7301071 GTACTCAAAGACTCGGGCT 59 NA Rattus norvegicus 81 Lnp ENSRNOG00000001593 ENSRNOT00000068018,ENSRNOT00000083045 1 2 2 80 3 61449557 61464037 CAGGACAAGAGATTCGTCAG 58 61449496 61449515 GAGGAGGACCCTGATTAGAG 58 NA Rattus norvegicus 81 Sirpa ENSRNOG00000004763 ENSRNOT00000091935 3 1 2 81 3 122141385 122141403 GCTCAACTTCTTCCACACG 59 122148176 122150138 GTGTCCTGGATCAAAGACTG 58 NA Rattus norvegicus 81 Zfp317 ENSRNOG00000006684 ENSRNOT00000034254,ENSRNOT00000078593 2 2 2 83 8 19888889 19890687 TGTCCTTCTCCAGATTGGG 59 19890734 19890752 ATCAGATGCTTCCTTCCCA 58 NA Rattus norvegicus 81 Tsc22d2 ENSRNOG00000038044 ENSRNOT00000088139 3 1 2 95 2 148609966 148652036 TGATGAAGACAGTGCATCTG 58 148652722 148652741 ACTGCATACATCAAATGGCT 58 NA Rattus norvegicus 81 Zeb2 ENSRNOG00000004677 ENSRNOT00000085801,ENSRNOT00000006350 1 2 3 82 3 29868403 29868424 CATGTGACTTATGTGACAAGAC 58 29863040 29868360 GTGTGGTCTCTTTCCTGTG 58 NA Rattus norvegicus 81 Ncam2 ENSRNOG00000002126 ENSRNOT00000078127,ENSRNOT00000002895,ENSRNOT00000082417 3 3 3 80 11 20495267 20501671 CATCTCTTGGTTCAGGAATGG 59 20501711 20501731 ACCGTGAGCTCTGTATTACTG 60 NA Rattus norvegicus 81 Ptger3 ENSRNOG00000010325 ENSRNOT00000014126 3 1 2 80 2 263940374 263940393 AACCAGATCTTGGATCCCTG 59 263940435 263978823 CAGGTTGTTCATCATCTGGC 59 NA Rattus norvegicus 81 Rcan2 ENSRNOG00000010350 ENSRNOT00000029593,ENSRNOT00000013956 1 2 2 83 9 19538016 19540702 CTACTTTGCACAGGTCCAG 58 19537951 19537969 ATGAGGAACTGTTTGGCAG 58 NA Rattus norvegicus 81 Rcan2 ENSRNOG00000010350 ENSRNOT00000029593,ENSRNOT00000013956 3 2 2 84 9 19538016 19540702 CTACTTTGCACAGGTCCAG 58 19537950 19537968 GATGAGGAACTGTTTGGCA 58 NA Rattus norvegicus 81 Trim37 ENSRNOG00000006248 ENSRNOT00000008298 1 1 3 92 10 74537199 74568352 TGAAGGCAGTGGAAGACTG 60 74568408 74568426 CCTGTACATGCAGTCTCCC 60 NA Rattus norvegicus 81 St18 ENSRNOG00000006200 ENSRNOT00000091649,ENSRNOT00000059625 2 2 3 80 5 12526928 12526949 AGATAAAGCGTTGCATACTCTC 59 12504497 12524951 TCATATGCAACCCTGAGCT 59 NA Rattus norvegicus 81 Asah1 ENSRNOG00000010034 ENSRNOT00000077188 2 1 2 86 16 54028885 54028905 ACAACCTTGATAGATGTCACC 58 54028953 54040546 GTTCTTGTAGTTCCAGCCT 57 NA Rattus norvegicus 81 Oas2 ENSRNOG00000049282 ENSRNOT00000091460 1 1 3 80 12 41361454 41361472 AAAGAAGCAAAGGAGTGGC 59 41361515 41363035 TACTACTGGTACTTTCGGCT 58 NA Rattus norvegicus 81 Srrm1 ENSRNOG00000018194 ENSRNOT00000082037 2 1 2 81 5 153685041 153685060 GGAGACATTCTCCTTCTCGG 60 153684635 153684997 TTTCCCATCTGCATCCGAG 60 NA Rattus norvegicus 81 Cep63 ENSRNOG00000008410 ENSRNOT00000084413 1 1 3 86 8 111064464 111066160 GTATCTTCGTGCTCGATGC 59 111064396 111064414 AATGTGGTGAGACCTCAGC 60 NA Rattus norvegicus 81 Mrpl23 ENSRNOG00000020354 ENSRNOT00000027585 3 1 1 60 1 215705950 215705968 GACTACAAAGTGGCCTACG 58 215709099 215709119 AAAGATCTGGGAAAGTGAAGG 58 NA DesignNoJunction Rattus norvegicus 81 Usp15 ENSRNOG00000023202 ENSRNOT00000031191 2 1 2 80 7 66611196 66617030 ACTCTGGACTTCTCAAAGATGG 60 66617069 66617089 TCGGCAACAGTATGTAATCCA 60 NA Rattus norvegicus 81 Rc3h2 ENSRNOG00000009196 ENSRNOT00000012354 1 1 2 80 3 21627216 21628518 ACCATGTGATTCTGGAGGAG 59 21627155 21627173 TGCTAATAGACACTGGGCG 60 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000024187 1 1 7 88 19 15119200 15119220 TGATGAGATTTGTACCACCTG 58 15119267 15119475 TGGTATACCCATATAGGAAGCA 58 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000020775 1 1 7 88 19 15144938 15144957 TGAGGAATGTGACTCCACAC 60 15146901 15146928 GGAATGTTCTTCTGTTAGAAGGTC 60 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000085762 2 1 7 81 19 15192670 15192689 GGTTATCTTCAGATTGGCCC 58 15192742 15192764 TAGCTGTAAGGCCAGTACAG 59 NA Rattus norvegicus 81 Ltn1 ENSRNOG00000001602 ENSRNOT00000002180 1 1 2 80 11 27053302 27053322 GAGCACCTTTCTACGTTTGTC 60 27052462 27053262 ACCTGAAGACTCTCGTTATCC 59 NA Rattus norvegicus 81 Ltn1 ENSRNOG00000001602 ENSRNOT00000002180 2 1 2 80 11 27041184 27041577 TTACCACATGCTCTACAAACTG 59 27041125 27041145 TCCTCTTCATCTCCATAGGAC 58 NA Rattus norvegicus 81 Rbms3 ENSRNOG00000025881 ENSRNOT00000041548,ENSRNOT00000039904,ENSRNOT00000036642 2 3 4 81 8 124933683 124936107 CATACCAGGTCCAGAGCAC 60 124892696 124892714 ATGGTGGGTGTGATCACAG 60 NA Rattus norvegicus 81 Tbc1d14 ENSRNOG00000006400 ENSRNOT00000085534,ENSRNOT00000058414,ENSRNOT00000077846,ENSRNOT00000082704 1 4 4 80 14 79425691 79425712 TCCATATCATGACATGTTGCAC 59 79425752 79426425 GACATGCCCTGAACATAACC 59 NA Rattus norvegicus 81 Zfp354a ENSRNOG00000003634 ENSRNOT00000045596,ENSRNOT00000085203 3 2 2 92 10 36590566 36590584 AAGGTGATCTCCCTGTTGC 60 36590639 36598163 ATGACTGCACTTCAATCCGA 60 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000084712,ENSRNOT00000025795 3 2 6 81 1 41928758 41928778 TTCCAGAGACCTTAAACAGCA 59 41928252 41928718 TCTTGCATATTGCTTGACTTCC 59 NA Rattus norvegicus 81 Fer ENSRNOG00000015898 ENSRNOT00000056430 3 1 2 87 9 111669065 111690163 CAGAGATACCAGGAAAGAAAGGA 60 111690204 111690228 CCGACTTTGGAGACTTAATTATTCC 60 NA Rattus norvegicus 81 Slc39a9 ENSRNOG00000005052 ENSRNOT00000006798,ENSRNOT00000089313 2 2 2 80 6 104322442 104323479 AATGCTACATAAGGCTCCAG 58 104323522 104323540 TTTCTGATTCGATTCCGCT 57 NA Rattus norvegicus 81 Hdc ENSRNOG00000010262 ENSRNOT00000086724,ENSRNOT00000041569 2 2 2 81 3 119061199 119061219 TCCATTAAGCTGTGGTTTGTG 59 119058768 119061156 TAGCCATGTCTGTACCGTG 59 NA Rattus norvegicus 81 Snx17 ENSRNOG00000026884 ENSRNOT00000091264 2 1 2 80 6 26546034 26546052 TTCACGTGAATGGAGTCCT 59 26545123 26545990 CATACTCCTTCCGAAGCTG 58 NA Rattus norvegicus 81 Bco2 ENSRNOG00000038746 ENSRNOT00000059192,ENSRNOT00000059191 3 2 2 80 8 54973649 54973667 TGATGGGAGAAGCCTAGAC 58 54969924 54973607 TTTGCCTTATAGACCTGATCG 58 NA Rattus norvegicus 81 Grik1 ENSRNOG00000001575 ENSRNOT00000050073 3 1 5 180 11 27876655 27918030 CCTCATCAAAGAGGCAAGG 58 27868032 27873992 AATCCCAATCTTCTTCCACAC 58 NA Rattus norvegicus 81 Ablim2 ENSRNOG00000007882 ENSRNOT00000091652 2 1 4 83 14 80054837 80056440 CGCGAGAGTATAAGATTTATCCC 59 80054776 80054794 TCCGGTCTACATCTTTGGG 59 NA Rattus norvegicus 81 Ttk ENSRNOG00000029055 ENSRNOT00000051612 3 1 2 80 8 91384943 91387864 AAGGCTGATAAAGAGTCACCA 59 91387905 91387924 ACTGCTACTAGGTGTCTCAC 59 NA Rattus norvegicus 81 Fmnl1 ENSRNOG00000003207 ENSRNOT00000065373 1 1 2 80 10 91268536 91272773 CATCATGAACTACCAGGTGTG 59 91272814 91272833 ATGTTGCTGTCTTCATTCCG 59 NA Rattus norvegicus 81 Slc35f2 ENSRNOG00000009014 ENSRNOT00000066222 2 1 2 106 8 58378638 58378658 GGTGGAAGTATACTCTCCTGG 59 58378726 58384065 TAAGAACGTCACTCCCTGG 59 NA Rattus norvegicus 81 Slco6d1 ENSRNOG00000031146 ENSRNOT00000065171 3 1 2 81 9 104864052 104868810 GGCACAGTAACAGATGAAGAG 59 104863991 104864012 ATTTGTGCGGTATTACAGTTCG 60 NA Rattus norvegicus 81 Cd6 ENSRNOG00000020884 ENSRNOT00000054809 1 1 2 98 1 226850567 226853446 CAAAGAAGATTCCCAGAGGC 59 226850279 226850297 ACGTGCAACTCTTCAAGTC 58 NA Rattus norvegicus 81 Tbx3 ENSRNOG00000008706 ENSRNOT00000011552 1 1 2 80 12 42490059 42490078 AATGGATGTCCAAAGTCGTC 58 42489112 42490016 AGGCCAAAGTAAATCCGTG 58 NA Rattus norvegicus 81 Pcmtd1 ENSRNOG00000005730 ENSRNOT00000061903,ENSRNOT00000007769 3 2 2 94 5 12143594 12143612 CTGGAGTCCAGAAAGACCA 59 12141199 12143538 AATCTGTGTCAACTGATCCTC 58 NA Rattus norvegicus 81 Lrrc14 ENSRNOG00000016128 ENSRNOT00000077562,ENSRNOT00000021673 2 2 2 122 7 117777670 117777880 GTTTGCAGGAAGCATACAC 57 117777965 117777984 AATACAAGTTCTGGCTACCG 58 NA Rattus norvegicus 81 Sox6 ENSRNOG00000020514 ENSRNOT00000048020 3 1 2 111 1 186068024 186068045 CCTGGAATAACATACAAGCCAG 59 186077722 186106485 CATAGAGCTGCTGAAGCTG 58 NA Rattus norvegicus 81 Tceb1 ENSRNOG00000031730 ENSRNOT00000050236,ENSRNOT00000090313,ENSRNOT00000082813 1 3 3 122 5 2051973 2054773 CACAATGGATGGAGAGGAG 57 2054856 2054877 CCTGATGTTAATGCATGTTCTC 58 NA InUTR Rattus norvegicus 81 St7l ENSRNOG00000014002 ENSRNOT00000084302 1 1 2 81 2 207420796 207473265 TTTGCTAAAGCTGCGATCG 59 207473308 207473328 CTTCTGTGAGTTTCTGACAGC 59 NA Rattus norvegicus 81 Krt12 ENSRNOG00000011986 ENSRNOT00000079297,ENSRNOT00000016337 3 2 2 85 10 87328981 87329889 TCGACTCCTCTAAAGACCCA 60 87328915 87328933 CTGGGATGAGACCACTTCG 60 NA Rattus norvegicus 81 Rnf123 ENSRNOG00000033378 ENSRNOT00000043825,ENSRNOT00000050344 3 2 2 80 8 116829975 116833487 GGTCCATCCTCAGAGACAG 59 116829913 116829933 GAGATAGCGTATAGAGCGGAG 60 NA Rattus norvegicus 81 Kcnq5 ENSRNOG00000013781 ENSRNOT00000040034 3 1 2 113 9 27642213 27642231 GAGAAGTCGGTCTCCATCG 60 27630486 27639494 CTTAAAGCTCAGCTTCTGACTG 59 NA Rattus norvegicus 81 Abcg8 ENSRNOG00000005420 ENSRNOT00000007638 2 1 2 86 6 7964957 7964976 TCTGAAAGTGACAACAGCCT 60 7965025 7966831 CATGTCCACCTGGTAGGTG 60 NA Rattus norvegicus 81 Pard3 ENSRNOG00000032437 ENSRNOT00000078559 3 1 2 81 19 60351935 60358396 CAGCAGGATAATGGGTAAATGC 60 60358434 60358456 CCTGTCATCTTCAATCATGACAG 60 NA Rattus norvegicus 81 Pard3 ENSRNOG00000032437 ENSRNOT00000042623 1 1 2 84 19 60351882 60351900 CTCTACAGTGGGATCGAGG 59 60351948 60358397 GGCATTTACCTGACTCACC 58 NA Rattus norvegicus 81 Postn ENSRNOG00000012660 ENSRNOT00000084527 3 1 2 80 2 143674642 143680507 CATGACTGTCTATAGACCTGC 58 143680546 143680567 GTTTCACCTTCTTTAATCAGCC 58 NA Rattus norvegicus 81 Csf2ra ENSRNOG00000049782 ENSRNOT00000077243,ENSRNOT00000070834 3 2 2 82 14 1463933 1464560 CTTCGAGAATGAAGGTGCC 59 1464605 1464624 AATAACAGCACAGGAAGTGG 58 NA Rattus norvegicus 81 LOC100911993 ENSRNOG00000013602 ENSRNOT00000031855 2 1 2 81 5 155966639 155968392 AATGAAGGGCAGTGATGGA 59 155968435 155968455 CTCATCTAGTTGCTCAAGAGC 59 NA Rattus norvegicus 81 Gapdhs ENSRNOG00000021009 ENSRNOT00000028518,ENSRNOT00000067813 1 2 2 80 1 89186887 89187604 GGCATCAATGGATTTGGAC 57 89186825 89186843 ATTCACTGCTACTACCCGA 58 NA Rattus norvegicus 81 Cand2 ENSRNOG00000010473 ENSRNOT00000014207 3 1 3 193 4 147692044 147692069 CTCCTCCTAGGTTCATGGC 59 147692775 147692794 CACTTGGTACTCCTTCACCT 59 NA Rattus norvegicus 81 Haus7 ENSRNOG00000055648 ENSRNOT00000090596 2 1 2 81 X 157362155 157362174 AGCAACTACAGTTCATGGAC 58 157362216 157362691 TCCTTCAGGCTAGAACTACTG 59 NA Rattus norvegicus 81 Pitpnm2 ENSRNOG00000029260 ENSRNOT00000048528,ENSRNOT00000084587,ENSRNOT00000091084 1 3 3 86 12 37880291 37881536 GATAACAGACATCATCGACATCG 60 37881582 37881600 ATCGACTGGAAGAGCTTGG 60 NA Rattus norvegicus 81 Otos ENSRNOG00000016567 ENSRNOT00000090382,ENSRNOT00000022220 2 2 2 140 9 99821633 99821651 GCACTTGGTAAGGATGCAG 59 99820694 99820712 GAGAAAGGCCAGTAAGGCA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ehmt1 ENSRNOG00000007242 ENSRNOT00000066777 3 1 2 116 3 2030858 2036894 CGTGCTGCAAAGAGTTCTG 60 2030760 2030778 CTTCTTTCTGCTTCTCCGC 59 NA Rattus norvegicus 81 Cnksr3 ENSRNOG00000018052 ENSRNOT00000024418,ENSRNOT00000082931 2 2 2 83 1 43825007 43831778 TCTGCGCACTGAATTATGG 58 43824942 43824960 TCTGCAGATTATGGGAGGA 58 NA Rattus norvegicus 81 Atad1 ENSRNOG00000010861 ENSRNOT00000092063 1 1 2 80 1 251253692 251255249 AAATTAGGCAGTTCCGACC 58 251253630 251253648 ATCAGTGTCCAGTCCATCC 59 NA Rattus norvegicus 81 Stard7 ENSRNOG00000013479 ENSRNOT00000066114 2 1 2 96 3 119699288 119718061 TTGCAGAGCTGGATACAGAG 60 119718119 119718138 AGAACCTCAGAACCACTGAC 59 NA Rattus norvegicus 81 Stard7 ENSRNOG00000013479 ENSRNOT00000088834 1 1 2 85 3 119712145 119712163 CACCTTTACCAGTACCGAG 57 119712445 119718066 CTGTACTCTGTATCCAGCTG 57 NA Rattus norvegicus 81 Prim2 ENSRNOG00000012486 ENSRNOT00000016828 3 1 2 81 9 38734432 38744494 GATGACGCACAATGTGGAC 60 38744539 38744557 AGTTAGGATTCGCTGGCTC 60 NA Rattus norvegicus 81 Nell2 ENSRNOG00000006235 ENSRNOT00000008985,ENSRNOT00000087376 1 2 2 80 7 136611968 136658189 CTCGTGTACGGAACATGAC 58 136611906 136611924 CCTCCAACGGTGTTAAAGC 59 NA Rattus norvegicus 81 Lrrc45 ENSRNOG00000045926 ENSRNOT00000082551,ENSRNOT00000071487,ENSRNOT00000082209 1 3 3 89 10 109900902 109903324 AACTGAAAGTGGTCGGGAG 60 109903377 109903395 CTTTGAGCCGCAGTTTCTC 60 NA Rattus norvegicus 81 Phkb ENSRNOG00000024101 ENSRNOT00000049624 1 1 2 80 19 22281736 22281754 GGGAAGAGGGACTCATGTC 59 22179573 22281692 CATAAACTGAGCCTGAGCG 59 NA Rattus norvegicus 81 Poc5 ENSRNOG00000018193 ENSRNOT00000087418,ENSRNOT00000061507,ENSRNOT00000080864 3 3 3 80 2 27025435 27025454 GGCTATCATGGGAGTTTCTC 58 27025497 27028429 TGAGGAATGGTTTGCACTG 58 NA Rattus norvegicus 81 Poc5 ENSRNOG00000018193 ENSRNOT00000087418,ENSRNOT00000061507 2 2 3 82 2 27003597 27003617 CTGATGAGGACAAGTGTTCAC 59 27003657 27006172 TTCATATTCCTCCTGAAGGTCTG 60 NA Rattus norvegicus 81 Xpr1 ENSRNOG00000000042 ENSRNOT00000000049 2 1 2 80 13 73027911 73056638 AGTACATCCAGTATGAGGCA 58 72984025 73027870 CCTCATCTGTAACTTCCACAG 58 NA Rattus norvegicus 81 Fank1 ENSRNOG00000018327 ENSRNOT00000024751 1 1 2 189 1 205911559 205911827 AAGAAATCGTGCCACTCCT 59 205911979 205922917 GCGTAGCCTGTGTAAATGAC 59 NA Rattus norvegicus 81 Scn5a ENSRNOG00000015049 ENSRNOT00000064555,ENSRNOT00000066932 2 2 3 80 8 128225404 128228776 CATTTCAGGCCTGAAGACC 59 128225342 128225361 AAGACAGTGAGGACCATCAC 60 NA Rattus norvegicus 81 Adgra3 ENSRNOG00000004279 ENSRNOT00000005894 3 1 2 81 14 64739601 64739622 TGTCATATTCAGACCAAACGTG 59 64739663 64739683 GGTGGACAGTATTGGGAGAG 60 NA Rattus norvegicus 81 LOC498369 ENSRNOG00000020730 ENSRNOT00000028149,ENSRNOT00000077942 3 2 2 80 10 89474512 89474769 ATTGAAAGCATCTCCTGATTCC 59 89474809 89474828 TCTTCCTCCGTTTCTTCGAC 60 NA Rattus norvegicus 81 Eci1 ENSRNOG00000008843 ENSRNOT00000083312 2 1 2 80 10 13808311 13808336 CTTGTCCAACCTGACATATCTG 59 13809293 13809312 CCTGTAGTCACAGGTGAGAG 59 NA Rattus norvegicus 81 Plagl2 ENSRNOG00000010086 ENSRNOT00000090919,ENSRNOT00000068592 2 2 2 80 3 148714526 148717235 AGTACAAGCTGTATAGGCAC 57 148714465 148714484 GGTGAAACATCTTGTCACAG 57 NA Rattus norvegicus 81 Cyld ENSRNOG00000014048 ENSRNOT00000018888 3 1 2 80 19 19298877 19310520 ACATCGTACCGAATAGCGT 59 19298815 19298834 AACCTTTGTCACCTACACCT 59 NA Rattus norvegicus 81 Polk ENSRNOG00000060626 ENSRNOT00000078639 2 1 2 80 2 27311204 27311222 AAGGAGCTGCTAAGGACAG 59 27308956 27311158 AGACATCCGAATAGCCGTC 59 NA Rattus norvegicus 81 Tmem245 ENSRNOG00000026271 ENSRNOT00000064043 3 1 2 80 5 73937563 73941042 CCAAATATGGAAGATGAAGATCCTG 60 73937507 73937526 GTGACTGTGGTAAACAGCAG 59 NA Rattus norvegicus 81 Cd300lg ENSRNOG00000020837 ENSRNOT00000073879 2 1 2 82 10 89986718 89986737 GCCTCTTACACCTACAAGGA 59 89986782 89987412 GGAGACCAGGAGAAGTCAG 59 NA Rattus norvegicus 81 LOC103693683 ENSRNOG00000046663 ENSRNOT00000071728,ENSRNOT00000091821,ENSRNOT00000071897,ENSRNOT00000073643 2 4 4 88 13 91220523 91222367 CATCACTGTCCAAGGTTCAG 59 91220454 91220472 CAAACAGGAGGCACATCAC 59 NA Rattus norvegicus 81 Papd5 ENSRNOG00000024212 ENSRNOT00000067582 2 1 2 83 19 19782085 19782106 GTTACCACATACAGAGATTGGA 58 19781920 19782042 GGTAACACCATTTCCATTGC 58 NA Rattus norvegicus 81 Nup62 ENSRNOG00000048733 ENSRNOT00000074847 1 1 1 134 1 100811778 100811796 GTTGAAGAGTCGGTGTGAG 58 100824885 100824905 CCTCCAAAGTTAAACCCACTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Krt15 ENSRNOG00000014099 ENSRNOT00000019037 3 1 1 80 10 88048912 88048930 CTGGAGATGCAGATTGAGC 58 88048543 88048870 GCTGAACTCTTTCATCTCCTC 59 NA Rattus norvegicus 81 LOC100909868 ENSRNOG00000048794 ENSRNOT00000071970 1 1 1 80 9 37753779 37755286 ATGGACTTTAAAGTGAGTGGAC 58 37755326 37755345 CAACTCATCTGATTGCACCA 59 NA Rattus norvegicus 81 LOC100909868 ENSRNOG00000048794 ENSRNOT00000071970 3 1 1 80 9 37750223 37750241 GACGTCCAAGATTCGTCAC 59 37753002 37753670 GGACGATCTACTTCTTACTTGTG 59 NA Rattus norvegicus 81 Gdf2 ENSRNOG00000057751 ENSRNOT00000085255 2 1 1 80 16 10267901 10267920 ACAACAGATACACTACGGAC 57 10267962 10271055 TCGATATAGCATCTTCCACG 57 NA Rattus norvegicus 81 Fcgr2a ENSRNOG00000049422 ENSRNOT00000004204,ENSRNOT00000047349 3 2 2 80 13 91171736 91195955 GAAGTGATTTCTGACTGGCT 58 91171675 91171694 ATGGCACCTTAATGTGATGG 58 NA Rattus norvegicus 81 Coro2a ENSRNOG00000008901 ENSRNOT00000089789,ENSRNOT00000011787 1 2 2 80 5 62164778 62165735 ATGATTACAAGGTGATGGTGTG 59 62164719 62164738 GGTGACAGTTGATTGTCCTC 59 NA Rattus norvegicus 81 AABR07002177.1 ENSRNOG00000055229 ENSRNOT00000080325,ENSRNOT00000088586 1 2 2 80 1 68471482 68471504 CTGACCTCATCTATAATCTCCTG 58 68471541 68477656 GCAATTTATGTACTCTGGTCAC 58 NA Rattus norvegicus 81 Nmd3 ENSRNOG00000009310 ENSRNOT00000064244 2 1 2 107 2 166423453 166423473 CCAGAAGACATCTGAAATGGA 58 166423541 166424766 CAGTTTGGCAAATCAAACCC 59 NA Rattus norvegicus 81 Cttn ENSRNOG00000047280 ENSRNOT00000054859 3 1 3 90 1 217617545 217618977 AGTCCCAGCAAGACTATGC 60 217613779 217613798 ACTTCTTCAAAGGTGGATGC 59 NA Rattus norvegicus 81 Snx3 ENSRNOG00000046705 ENSRNOT00000075924,ENSRNOT00000074532 2 2 2 89 20 47253680 47253702 CTTCAAGCTGAAGGAATCTACTG 59 47253751 47260718 GAACGACAACCTTGCTCTC 59 NA Rattus norvegicus 81 Med13l ENSRNOG00000001120 ENSRNOT00000042331 1 1 3 146 12 43462061 43462079 GAGTGCATCCTTAACAGGG 58 43457312 43459914 AAGTTTATGGCACCTGGAG 57 NA Rattus norvegicus 81 Nfrkb ENSRNOG00000008278 ENSRNOT00000011223 3 1 2 82 8 32545795 32545905 AGACCAGGCTTTCTGTAAGG 60 32545945 32546701 GAACCACATAGTCAGTTCTTACTC 59 NA Rattus norvegicus 81 Lrriq4 ENSRNOG00000009004 ENSRNOT00000058919 2 1 2 116 2 116374162 116374582 ATACTCAAACACAGGGTCTC 57 116370565 116370583 AGTAGTTCCTTGGTCAAGC 57 NA Rattus norvegicus 81 Sec31a ENSRNOG00000002251 ENSRNOT00000033489 1 1 3 81 14 10879809 10879827 TTGAGGAGGATTCTCGTGG 59 10879871 10884522 TCCTCTTTAATGCGCTTCTC 58 NA Rattus norvegicus 81 Aif1 ENSRNOG00000000853 ENSRNOT00000076979 3 1 3 81 20 5162792 5162917 GATCAACAAGCACTTCCTCG 59 5162730 5162748 CTCACTCTTGAAGGCCTCC 60 NA Rattus norvegicus 81 Aif1 ENSRNOG00000000853 ENSRNOT00000001135 2 1 3 95 20 5162965 5163140 CAAGGATTTGCAGGGAGGA 60 5162782 5162801 TTGGGATCATCGAGGAAGTG 60 NA Rattus norvegicus 81 Ugcg ENSRNOG00000015644 ENSRNOT00000088872,ENSRNOT00000021110 1 2 2 80 5 76409312 76409330 TGCCAGCATATGAAGTTGC 59 76409369 76410044 CAGTTAATGTGTCTGGAATGACTC 60 NA Rattus norvegicus 81 Chek2 ENSRNOG00000037509 ENSRNOT00000085591,ENSRNOT00000056800 3 2 2 80 12 51852895 51853586 GAGGACTGTCTTATCAAGATCAC 59 51852837 51852857 ACCACATAGAGTCCTCATCAG 59 NA Rattus norvegicus 81 Chst10 ENSRNOG00000012815 ENSRNOT00000087866 2 1 2 142 9 45546505 45556980 AGGAAGGATCATCGGATGG 59 45538299 45546399 CACTATACCCATCCGGGTC 59 NA Rattus norvegicus 81 Setd2 ENSRNOG00000020915 ENSRNOT00000087154,ENSRNOT00000028409 1 2 2 80 8 118830265 118834405 CAAGGATCTTCCTTCGAACAC 59 118834446 118834465 TTCACCCGAGCTTTAAACTC 58 NA Rattus norvegicus 81 Eya3 ENSRNOG00000010396 ENSRNOT00000056170 3 1 2 91 5 150865469 150865487 ACTCAGTACCAGACACTGC 59 150865542 150880364 GTGCTTGAAGCGAAAGGAG 60 NA Rattus norvegicus 81 Spink14 ENSRNOG00000045824 ENSRNOT00000073750 1 1 1 60 2 36011081 36011101 TTCTCCATCATGCTTCATTCG 59 36011770 36011788 TAGGCCACCAAACTCTAGC 59 NA DesignNoJunction Rattus norvegicus 81 Prep ENSRNOG00000051061 ENSRNOT00000076640,ENSRNOT00000091456 3 2 2 80 20 50177664 50194468 GAACAGACAAAGGCTTTCG 57 50194509 50194530 GTATAGACCTCTGATTGGACAC 58 NA Rattus norvegicus 81 R3hdm2 ENSRNOG00000007801 ENSRNOT00000090001 1 1 2 83 7 70770617 70770637 GAATATCAAAGGGTCCGAGAG 58 70773492 70773625 TTCTTTGGAGAGTCTGATGTC 58 NA Rattus norvegicus 81 R3hdm2 ENSRNOG00000007801 ENSRNOT00000090001 3 1 2 84 7 70770616 70770635 GGAATATCAAAGGGTCCGAG 58 70773492 70773625 TTCTTTGGAGAGTCTGATGTC 58 NA Rattus norvegicus 81 Hps4 ENSRNOG00000000661 ENSRNOT00000079256 1 1 2 80 12 50288798 50290136 TTATTCAGTACCACAGCAGC 58 50288737 50288755 TAGTCTCATCTCTGGGCAG 58 NA Rattus norvegicus 81 Chd6 ENSRNOG00000016744 ENSRNOT00000022861 1 1 2 80 3 157040376 157049630 AGAAGAAAGAGAAGCAGTTGTC 59 157040317 157040337 TGTAGTCAAAGTTAACGGAGG 58 NA Rattus norvegicus 81 Slc5a11 ENSRNOG00000013407 ENSRNOT00000065342 2 1 2 80 1 193202357 193202383 CACTCACTCTTTAACTATCCTGC 59 193202423 193202441 TACAGATCCAGGTGCAAGG 59 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000082355,ENSRNOT00000013991 2 2 7 81 16 64025228 64036326 TCAAGATACTTGTGCAAGTGC 59 64036367 64036387 CTTGGGTTTGGACTTTCATGG 60 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000014147,ENSRNOT00000038549 2 2 7 105 16 64025208 64025226 TGAAGGACCTGTCAAACCC 60 64036978 64048152 TCCTCCGCTTTGTAGAAGC 60 NA Rattus norvegicus 81 Sept7 ENSRNOG00000006545 ENSRNOT00000081574 3 1 3 114 8 26432873 26434072 TCAACCGAAGAACCTTGAG 57 26434149 26447685 TCCAGATTCACCTACTACCA 57 NA Rattus norvegicus 81 Arid1b ENSRNOG00000017030 ENSRNOT00000022939 1 1 2 82 1 46169894 46169917 CAGTAACTTTCAGCAGAGTAACTC 60 46169956 46182857 TTCTGGAGTAGTTACCTTGGG 59 NA Rattus norvegicus 81 Svep1 ENSRNOG00000033110 ENSRNOT00000085698 1 1 2 80 5 75211366 75211384 GCAGAAGAAAGCATAGTGC 57 75210178 75211322 TTCGTGAAAGACCTGACTG 57 NA Rattus norvegicus 81 Grik2 ENSRNOG00000000368 ENSRNOT00000076805 3 1 2 85 20 54269467 54517313 ACATGTGTTAAGATTCGGTGG 59 54269402 54269421 TCACAGCAAATCTGAATGCA 59 NA Rattus norvegicus 81 Pitpnb ENSRNOG00000000665 ENSRNOT00000052202 3 1 2 84 12 51312310 51313643 TACTGCAGAACAATTCTGCA 58 51312245 51312263 TTCCCAAGTCAGGTTTGTG 58 NA Rattus norvegicus 81 Gorasp1 ENSRNOG00000018047 ENSRNOT00000024408,ENSRNOT00000084950 2 2 2 87 8 128616390 128616856 ACTCAAGGCTGAACAAGGA 59 128616321 128616339 ATGTTGAACACCTCCAGCT 59 NA Rattus norvegicus 81 Gstm7 ENSRNOG00000018937 ENSRNOT00000025689 3 1 3 100 2 210725771 210725790 AGAGATACACCATGGGAGAC 58 210724971 210725276 AATTAAGTAGGGCAGATTGGG 58 NA Rattus norvegicus 81 Gstm7 ENSRNOG00000018937 ENSRNOT00000081501,ENSRNOT00000025939 3 2 3 102 2 210782372 210782390 ACAAGAAGTACAGCATGGG 58 210724972 210781987 ATTAAGTAGGGCAGATTGGG 57 NA Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000001115,ENSRNOT00000077809 2 2 5 102 20 4817164 4818499 GTGCTTAGCTCTTCTGTCG 58 4817080 4817098 TGAGTTAGGTGTCCCAGAG 58 NA Rattus norvegicus 81 Dlc1 ENSRNOG00000010780 ENSRNOT00000014924 1 1 2 108 16 59197682 59219557 GATCCTAACACAAATTGAAGCC 58 59222870 59222891 CGCAATATCAATAGGAAACAGG 58 NA Rattus norvegicus 81 Wdyhv1 ENSRNOG00000006700 ENSRNOT00000008785 1 1 2 94 7 97967524 97976921 CAGCAGCTGCTATTGTGAG 59 97967448 97967466 TGAAGACAGCGTAGCACTC 60 NA Rattus norvegicus 81 Arpp21 ENSRNOG00000008919 ENSRNOT00000085161 3 1 3 159 8 120387456 120387474 TGCGATATACAACCCTCCC 59 120386557 120387333 CTGGACAGACTGAGTGACC 59 NA Rattus norvegicus 81 Gulp1 ENSRNOG00000003242 ENSRNOT00000004463 1 1 3 80 9 51524009 51536198 ATTGGATGAGATGCAGGAGG 60 51536241 51536259 CTGCTGTCTAATGGGTCGA 59 NA Rattus norvegicus 81 Gulp1 ENSRNOG00000003242 ENSRNOT00000065212 1 1 3 87 9 51509555 51509922 CAGATGCTGGATCCAAGAC 58 51509973 51509991 TTGAGTTGTTCTCAACCGG 58 NA Rattus norvegicus 81 Zbtb44 ENSRNOG00000005578 ENSRNOT00000007539,ENSRNOT00000081145 2 2 2 81 8 32211454 32213615 GCTTATCCACTCAGGAATTAAACC 60 32213653 32213673 ATGCATCTTTAGCGAGTAAGC 59 NA Rattus norvegicus 81 Vav2 ENSRNOG00000007422 ENSRNOT00000081376 3 1 2 87 3 5817516 5817536 AAGCAGTTAGACACTACACTC 58 5816034 5817467 GTGTGAACACTGGAGATCG 58 NA Rattus norvegicus 81 Mfsd6 ENSRNOG00000012663 ENSRNOT00000031267,ENSRNOT00000083487 3 2 2 80 9 53704937 53706129 GGAAGAAGATAAGACGATGTTGG 59 53706168 53706187 TGTACCAGGTCGATAGTTGC 60 NA Rattus norvegicus 81 Tbc1d5 ENSRNOG00000010637 ENSRNOT00000083387 2 1 2 80 9 1631892 1635615 GTACAGTTGAACAAAGGCGA 59 1635658 1635676 TTGGAGGTCAGTTAGAGCC 59 NA Rattus norvegicus 81 Mycbpap ENSRNOG00000042912 ENSRNOT00000086261,ENSRNOT00000075795,ENSRNOT00000066132 3 3 3 80 10 82234806 82236146 TGTACCAGATGTGTTTGCAG 59 82234745 82234766 CTAGAAGACTTCTTAGCCACAG 58 NA Rattus norvegicus 81 Atf6b ENSRNOG00000000431 ENSRNOT00000080649 2 1 5 109 20 4420369 4420387 CTTGCTGATGAGCTGAGTG 59 4420459 4420662 TTCCGTAGCTGAGACTTCTG 59 NA Rattus norvegicus 81 Tpp2 ENSRNOG00000011194 ENSRNOT00000078220,ENSRNOT00000085267,ENSRNOT00000015393 1 3 3 80 9 50622543 50622562 GGACTCAGCTAATGAATGGG 58 50622603 50623897 CTTTCAGTCCTGAAAGTACCA 58 NA Rattus norvegicus 81 Ocln ENSRNOG00000018297 ENSRNOT00000024674,ENSRNOT00000084667 3 2 2 80 2 30536867 30536887 CCACTATGAAACCGACTACAC 59 30534400 30536827 ATAGGTGGATATTCCCTGAGC 59 NA Rattus norvegicus 81 RGD1561161 ENSRNOG00000039582 ENSRNOT00000060673 1 1 2 81 2 45230079 45230103 GAGGATTTCCGGATTACTATTTCAC 60 45230140 45240918 ATGAGAAGGCTGTATTTGCAC 59 NA InUTR Rattus norvegicus 81 Il31ra ENSRNOG00000042080 ENSRNOT00000041452 1 1 2 81 2 44339292 44339310 ACTCTAATTGGAGGAGGCC 59 44337785 44339247 GAGTCAATCGGCTGTTTGG 59 NA Rattus norvegicus 81 Nr2f2 ENSRNOG00000010308 ENSRNOT00000014152 3 1 2 155 1 131454191 131454209 CAAGAGCTTCTTCAAGCGC 60 131452451 131454072 CTCTGTACAGCTTCCCGTC 60 NA Rattus norvegicus 81 Leng8 ENSRNOG00000018642 ENSRNOT00000077964 2 1 2 92 1 73727926 73727944 GAAACTGCTCAAGGAGGTG 59 73727628 73727870 CAAGATTGTCCAGGCAGAG 58 NA Rattus norvegicus 81 Extl2 ENSRNOG00000014323 ENSRNOT00000091001,ENSRNOT00000019190 2 2 2 81 2 218966451 218966470 CCTCTTCAAACCACAAACGG 60 218966514 218967502 CATTAACACCGCGTTGGTC 60 NA Rattus norvegicus 81 Zfp26 ENSRNOG00000025937 ENSRNOT00000038084 3 1 2 80 8 21454253 21454273 CTGGATCCAATTCAGAGAACC 59 21453176 21454211 TAGCTGACCTCCTACTGTG 58 NA Rattus norvegicus 81 Lcn12 ENSRNOG00000028730 ENSRNOT00000020997 2 1 2 80 3 2717671 2717689 TCATCTGCCTGACCAAGAC 59 2716621 2717629 TTGGATCCAGTAACCAGTCAG 60 NA Rattus norvegicus 81 Adam5 ENSRNOG00000017518 ENSRNOT00000058330,ENSRNOT00000092198 1 2 2 80 16 72031969 72042195 AACTTGCTCGGGAAATATGTG 59 72042234 72042255 GTTGCCAAATCTATCGTTTCTG 58 NA Rattus norvegicus 81 Atp13a2 ENSRNOG00000008052 ENSRNOT00000010884 2 1 2 80 5 159530831 159531085 TCTACACCAACGGACTGAG 59 159531129 159531147 CCACAAAGTTGAAGGCGAC 60 NA Rattus norvegicus 81 Scml4 ENSRNOG00000026110 ENSRNOT00000064905 1 1 2 98 20 47656120 47663586 TGTCACAGTCTCTGCTTCC 59 47663648 47663666 CACAGTTTGGTCAGGAAGC 59 NA Rattus norvegicus 81 Csk ENSRNOG00000019374 ENSRNOT00000026358,ENSRNOT00000091223 3 2 2 83 8 62407326 62407345 GTTTGGTGGACTATCTTCGA 57 62407162 62407281 CTTCACAGACGTCTAGTGAG 58 NA Rattus norvegicus 81 Cdc40 ENSRNOG00000000581 ENSRNOT00000064081,ENSRNOT00000087740,ENSRNOT00000077926 3 3 3 80 20 48564867 48564887 TTGTCTTTGTGGATGAGAACC 59 48564929 48570168 CAGGGATATCCCATTCCCA 58 NA Rattus norvegicus 81 Sec63 ENSRNOG00000000314 ENSRNOT00000087718 3 1 2 94 20 47557149 47557167 GTGGTGGCTTTACATTGCA 59 47557224 47558616 TCAGCTCTACCTCTTCTGTG 59 NA Rattus norvegicus 81 Slc20a2 ENSRNOG00000019490 ENSRNOT00000026418 3 1 2 80 16 74338780 74344506 CATCCTAACCAAGGAGGACC 60 74338719 74338740 ACGTTTATTGCTATAGTGGCAG 59 NA Rattus norvegicus 81 Lars2 ENSRNOG00000004760 ENSRNOT00000087488,ENSRNOT00000068233 3 2 2 80 8 132495520 132495538 CATGGGCTTCTACATGGCT 60 132495582 132504653 TGGTGTGAGGCAATCTCTG 60 NA Rattus norvegicus 81 Slc35c2 ENSRNOG00000018649 ENSRNOT00000087646,ENSRNOT00000025238 2 2 2 80 3 161805477 161805496 ATTGACACCATGTTCCACCT 60 161803061 161805437 CAAATGGAGACCTTCGAATACG 60 NA Rattus norvegicus 81 Gad1 ENSRNOG00000000007 ENSRNOT00000000008,ENSRNOT00000087712,ENSRNOT00000087134 1 3 4 83 3 56886776 56886880 CAGAACACAGTCACTATTCCA 58 56886922 56886943 CATTGCACTTTATCAGGATCAC 58 NA Rattus norvegicus 81 Gad1 ENSRNOG00000000007 ENSRNOT00000000008,ENSRNOT00000087712,ENSRNOT00000087134 1 3 4 83 3 56886776 56886880 CAGAACACAGTCACTATTCCA 58 56886922 56886943 CATTGCACTTTATCAGGATCAC 58 NA Rattus norvegicus 81 Gad1 ENSRNOG00000000007 ENSRNOT00000000008,ENSRNOT00000087712,ENSRNOT00000087134 2 3 4 84 3 56886775 56886879 TCAGAACACAGTCACTATTCC 58 56886922 56886943 CATTGCACTTTATCAGGATCAC 58 NA Rattus norvegicus 81 Slc24a2 ENSRNOG00000008169 ENSRNOT00000010827,ENSRNOT00000083373 1 2 2 80 5 105385354 105385374 AGATTGCCAAGAAGAAATGCC 60 105381455 105385312 TTTCTGCGGCATAATCCAC 59 NA Rattus norvegicus 81 Slc24a2 ENSRNOG00000008169 ENSRNOT00000010827,ENSRNOT00000083373 2 2 2 80 5 105427808 105427827 TCCACAACAGTCTCATGAGG 60 105402760 105427767 ATGATCCAAGTTCTTCAGCGA 60 NA Rattus norvegicus 81 Alpl ENSRNOG00000013954 ENSRNOT00000019004,ENSRNOT00000078851 3 2 2 81 5 156094783 156097869 GACATCGATGTGATCATGGG 59 156094721 156094742 TCTCATCCAGTTCATATTCCAC 58 NA Rattus norvegicus 81 Ash2l ENSRNOG00000014875 ENSRNOT00000086891 1 1 2 90 16 71019133 71020122 AACCTAAATGGTGGAGCCA 59 71021819 71021837 CTCCATCTTGCTGCTTACG 59 NA Rattus norvegicus 81 Pigu ENSRNOG00000025181 ENSRNOT00000034708,ENSRNOT00000089935 1 2 3 100 3 150853790 150855175 GGTATTTATGATAACAGATGCCCTC 60 150850109 150850129 GCTCTAGGAGAAGTTTCTGCT 60 NA Rattus norvegicus 81 Nek3 ENSRNOG00000012757 ENSRNOT00000090646 2 1 3 86 16 74799214 74800687 TATTATGGGCCAGTCAAAGAC 58 74801362 74801381 CTTGAGGAAGAGCTTGTCTC 58 NA Rattus norvegicus 81 Casp9 ENSRNOG00000012944 ENSRNOT00000017972,ENSRNOT00000088523,ENSRNOT00000080721,ENSRNOT00000085378 2 4 4 113 5 160356362 160358472 ATCGAGGATATTCAGCGGG 59 160358549 160358567 TAAGCAGGAGATGAAGCGA 59 NA Rattus norvegicus 81 Capzb ENSRNOG00000007330 ENSRNOT00000083577,ENSRNOT00000010308 3 2 2 81 5 157730833 157731137 AAGTGCAGGAGAAGTCCAG 59 157731182 157731200 GATTTGTTGGTTTGCAGCC 59 NA Rattus norvegicus 81 Adprhl1 ENSRNOG00000019504 ENSRNOT00000057740 1 1 4 80 16 81632237 81641334 TCAGCTACCATTGTTCCGA 59 81641378 81641396 TGATCCTCTTCTTCAGCGT 58 NA Rattus norvegicus 81 Pde1a ENSRNOG00000054212 ENSRNOT00000084299 1 1 2 83 3 66836046 66836064 ATGTCCCTGATACTCCACG 59 66835979 66835999 CTCCATAAGCATGGTCCAC 58 NA Rattus norvegicus 81 Slc10a2 ENSRNOG00000037753 ENSRNOT00000081359,ENSRNOT00000057310 1 2 2 80 16 90332940 90332961 CCTTTGCCTCTTCATCTATACC 58 90333000 90336983 AGAGAAATGCCAATGCTATCG 59 NA Rattus norvegicus 81 LOC681180 ENSRNOG00000046576 ENSRNOT00000074550,ENSRNOT00000050464 1 2 2 85 16 66230932 66230950 AGTGTCAATTCGAGAGGGA 58 66230999 66232359 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 Dhx35 ENSRNOG00000015928 ENSRNOT00000021435 3 1 2 82 3 155344042 155344060 GGTCCTGAGGTGTATCGTG 60 155344100 155349073 CATTGTAGATAACCCTATATGCTCC 59 NA Rattus norvegicus 81 Dhx35 ENSRNOG00000015928 ENSRNOT00000084866 1 1 2 80 3 155344044 155344062 TCCTGAGGTGTATCGTGTC 59 155344103 155346955 CATCACGGATAGTCCTATATGC 58 NA Rattus norvegicus 81 Np4 ENSRNOG00000028707 ENSRNOT00000088257,ENSRNOT00000029297 3 2 3 94 16 75415446 75415464 TCTAGATCAGGAGCAGCTG 58 75414890 75415389 ACTTCACATCTGCATCTTGG 58 NA Rattus norvegicus 81 Rasa3 ENSRNOG00000017671 ENSRNOT00000080963 1 1 2 80 16 81382498 81434184 AGGATCAAGATTGGTGAAGC 58 81382437 81382455 GTTCACAGTGCAGTAGCAG 59 NA Rattus norvegicus 81 AY172581.9 ENSRNOG00000030478 ENSRNOT00000040038 1 1 1 60 MT 618 642 GAGCCTGTTCTATAATCGATAAACC 60 658 678 TAGGCTGAATTAGCGAGAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AY172581.21 ENSRNOG00000033545 ENSRNOT00000049396 2 1 1 61 MT 3807 3825 AGGGTGTATTGGTAGCACG 60 3764 3787 GGACAATAGGAATTGAACCTACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000060522 ENSRNOT00000083901 3 1 1 65 5 5737100 5737118 AGTTCTGGGCTGTAGTACG 59 5737053 5737071 GTCACCATATTGATGCCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052755 ENSRNOT00000087104 1 1 1 60 2 85008811 85008830 AGAGAAGATTAGCATGGCCC 60 85008770 85008789 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009891.1 ENSRNOG00000059664 ENSRNOT00000088891 3 1 1 61 2 115231945 115231966 CTTCTGTTCCTGAGCATCG 58 115231902 115231920 GAGATGAGCAGGATCATGC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000053556 ENSRNOT00000084488 2 1 1 60 2 260026392 260026411 GTCATGTGGATGTCAGTAGG 58 260026434 260026452 GTCAGAACACTGAGCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044362.1 ENSRNOG00000058490 ENSRNOT00000091390 3 1 1 96 20 3140393 3140412 CTATGATGGTCACAGCTCCA 59 3139421 3140334 TTTCTCTGGCTGTCCTTCC 59 Novel Rattus norvegicus 81 AABR07040624.1 ENSRNOG00000058183 ENSRNOT00000082858 3 1 1 60 X 106607333 106607351 GAAGTAACATCCTGCCGAC 58 106607291 106607311 CCTTGCACAAGATAAACCACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD22 ENSRNOG00000054258 ENSRNOT00000082340 1 1 1 63 2 128343450 128343468 ACTTCCTGTCCTAGTCCCA 59 128343405 128343423 CTTATTCCACCACAGCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038957.1 ENSRNOG00000054638 ENSRNOT00000077667 1 1 1 60 X 64914283 64914302 AATCAGGATCTTCAGCTGTG 58 64914325 64914343 GGTGGTCTGCAAAGATGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056497 ENSRNOT00000090063 3 1 1 60 2 180669058 180669080 GAGAAGATATCATGATCACGGAG 59 180669100 180669118 CAGAGTGCCATGGATAAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044200 ENSRNOT00000069467 2 1 1 60 2 142840837 142840857 ACTCAGTGGAATTTCAGAAGC 59 142840797 142840819 AGTCTCCCATCCAAGTATTAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060465 ENSRNOT00000079120 1 1 1 60 5 152997473 152997493 ACTAAAGTTGGGACAACACAG 59 152997515 152997533 ACTCGTGAGTCTTGCTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000059993 ENSRNOT00000085968 3 1 1 65 8 32053296 32053314 AATGAGGTTTATCCGAGGC 57 32053342 32053361 ATCCATGTCCAAGACAACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059021 ENSRNOT00000089219 1 1 1 60 11 46962274 46962292 CTCCATATGCGTCCATCCT 59 46962232 46962250 CACCAGTTCACAGCTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012575.1 ENSRNOG00000049706 ENSRNOT00000073822 3 1 1 67 2 197784293 197784311 ATCTCTGTGAGTTCGAGGC 59 197784342 197784360 TCTCTGTGTATTGCTGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054944 ENSRNOT00000090284 3 1 1 60 5 101849458 101849478 GACGACCTTCCCTGAATAGAG 60 101849418 101849436 ACGCAGCTACTCGTATACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059677 ENSRNOT00000078397 3 1 1 60 8 75827640 75827658 AGCACTCGTAAGCATATGG 57 75827678 75827700 TTTAGAAGCACCTACCTAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ACEA_U3 ENSRNOG00000056601 ENSRNOT00000089049 2 1 1 60 2 146467032 146467052 TTGCCATTGATGATCGTTCTC 59 146467074 146467092 CACTCAGACTGTGTTCCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054727 ENSRNOT00000082038 3 1 1 61 11 67337019 67337039 TGGAAGGATACAGAGGTTACC 59 67336978 67336997 GAGTTTCATGCATTTGTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058807 ENSRNOT00000084459 2 1 1 60 2 175713513 175713532 CATATGTGCATCAGTCAGGA 58 175713472 175713493 GTTCATAGATCAGCACACTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA66 ENSRNOG00000059745 ENSRNOT00000087097 1 1 1 60 5 8012953 8012974 GCTAGAGCAATTGTGGTTACAG 60 8012914 8012933 AAGAGTAGCACCTCAGTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055343 ENSRNOT00000088092 3 1 1 60 2 10368282 10368304 GATACAGAGAAGATTAGCATGGC 59 10368244 10368262 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000054813 ENSRNOT00000089220 2 1 1 100 5 50651455 50651474 CAATGAGGTTTATCCGAGCG 59 50651537 50651555 AAAGTACCATAGGCTGGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA40 ENSRNOG00000056305 ENSRNOT00000088072 2 1 1 61 8 64311702 64311720 GACAAAGGCAGGTTGACAG 59 64311744 64311763 AACAATGAGTTCTGGGTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054357 ENSRNOT00000086467 2 1 1 60 8 109820178 109820198 GTCACATATGTGTCAGTAGGT 57 109820138 109820156 CAGAACACTGAGCACAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037729.1 ENSRNOG00000052455 ENSRNOT00000081986 2 1 1 81 X 29174883 29174902 TGTGGCCAATATGTTGTCAG 59 29174945 29176339 AAAGAAGCCCTGGATCTGAG 60 Novel Rattus norvegicus 81 SNORA70 ENSRNOG00000061762 ENSRNOT00000090049 3 1 1 60 8 117213336 117213359 CTAGATTCCTTTCTTTATGGAGGC 59 117213299 117213320 GCATAAGCTACTTATGTTTGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000054958 ENSRNOT00000084098 3 1 1 60 8 126883588 126883606 GATGAAGAATGCAGCCAGC 60 126883629 126883648 GTCCATGATCAATGTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045493 ENSRNOT00000070760 1 1 1 61 16 25578392 25578410 CTACGGCCATACCACTCTG 60 25578349 25578368 TGCTGTTTGATTTCTTCCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000061167 ENSRNOT00000080208 1 1 1 60 8 23032894 23032914 ATGAGGTTTATCTAAAGCGCG 59 23032936 23032954 CTGGGCTACATGGTGAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001416.2 ENSRNOG00000059359 ENSRNOT00000087706 1 1 1 60 1 42969034 42969053 CAATGATGCTGTCCAGATCC 59 42969075 42969094 GACACATCTGTGGTCCTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000059239 ENSRNOT00000078695 3 1 1 61 1 144625667 144625685 GTACCAAAGACACAGCCAG 59 144625624 144625644 CATATCGGCCATCTTAAAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000061708 ENSRNOT00000079211 3 1 1 63 8 20133513 20133532 AGGCAATGACAATTCAAGCT 59 20133558 20133576 TTTCAGGTCAGGGTTGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000060263 ENSRNOT00000081805 3 1 1 60 16 2193859 2193883 CTGGTCATTTATACTGTAGGAAGAG 59 2193901 2193919 CAGACTTTCCAAACACCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000059941 ENSRNOT00000088216 1 1 1 87 17 47856777 47856795 AGAAGCTAAGCAGGGTTGG 60 47856708 47856730 CAGACAACTAGCAGAACTATCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002782.1 ENSRNOG00000054568 ENSRNOT00000088960 2 1 1 60 1 84833945 84833963 AGGAAGAAGGTGATGTGGT 58 84833903 84833925 CCTAACAGCATATAGTCCTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060609 ENSRNOT00000090750 1 1 1 60 2 248528225 248528246 ATACAGAGAAGATTAGCATGGC 58 248528265 248528285 GGAACACTTCATGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051749 ENSRNOT00000081923 2 1 1 60 4 6880677 6880698 GAATGATAGAGATCAGCATGGC 59 6880638 6880657 TGGAAGCTTCATGAATTTGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068306.1 ENSRNOG00000036543 ENSRNOT00000054650 2 1 1 60 9 97384945 97384963 GAATCGTAATGCAGGGCTG 59 97384903 97384921 ATTTGGTTGTGAGCCTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA38 ENSRNOG00000056839 ENSRNOT00000083234 2 1 1 67 9 16957438 16957456 TTTGGTTCCCTGTCCTTGG 60 16957486 16957505 CAGACCTTTCCAAATCCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000055603 ENSRNOT00000086736 1 1 1 60 6 91645239 91645260 CCTGCTTTCTTTGGAATATGTG 58 91645200 91645221 CTTCAACTATGTGTATAGCACG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000059253 ENSRNOT00000091852 3 1 1 85 X 135651495 135651515 GGCTCTTTAAGAGGCTAACAC 59 135651562 135651580 ACAGGAACCAAAGAGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_2856.2 ENSRNOG00000061485 ENSRNOT00000081397 2 1 1 82 1 278163271 278163290 TAAACACTATGGACTGCACC 58 278161668 278163229 GGTTTCCTGACAATTTATCCTG 58 Novel Rattus norvegicus 81 SNORA70 ENSRNOG00000061686 ENSRNOT00000088324 2 1 1 76 X 157034123 157034141 TGACTTTCCTCATGGGAGC 59 157034065 157034085 TAGGTAACAGTGAATTCACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Mroh4 ENSRNOG00000005382 ENSRNOT00000076443,ENSRNOT00000076775 3 2 4 95 7 115874080 115874353 AATAACTCAAAGACAGGGTGC 59 115874005 115874023 TTTGGAAGGGAAACAGAGC 58 Novel Rattus norvegicus 81 AABR07012583.3 ENSRNOG00000059093 ENSRNOT00000089409 1 1 1 80 2 198418852 198418871 CATCTCATCTAAGGCCATGG 58 198418914 198424325 TGGGAAGTCTTCCTTCCTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000052165 ENSRNOT00000079691 3 1 1 61 X 144402098 144402121 ACAGAGAAGATAACATACCTCCTG 60 144402140 144402159 GCATGGAATGTTTCATGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000054892 ENSRNOT00000079934 2 1 1 60 6 133826518 133826536 CCGATGATGAGATCTGGTG 58 133826560 133826578 GATGTCTGGTTACTTGGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055584 ENSRNOT00000080550 1 1 1 60 2 213207904 213207924 AATAGAGGAGGACCGAATAGC 59 213207864 213207882 TTGGGCAAATCTTGTTTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000058942 ENSRNOT00000091839 3 1 1 60 X 33175816 33175837 TGGTGTTCTTATATCAGTCAGG 57 33175856 33175876 TCAAGCTAGGATGAACAAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059241 ENSRNOT00000092220 2 1 1 61 2 205444437 205444455 TGACTCCTGTGGGAAAGTC 59 205444394 205444413 GGGAGTGTGAATACAGTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027157.1 ENSRNOG00000045923 ENSRNOT00000072610 1 1 1 60 17 17137023 17137041 AGCTTTGTAGACCAGGCTG 60 17136981 17136999 ACTTAGGAGGCAGATGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061790 ENSRNOT00000090684 3 1 1 62 17 30252422 30252440 TTGTGACTGTTGTGTCCCA 59 30252465 30252484 TGTAAACATAGCCTTTCGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000061003 ENSRNOT00000087570 3 1 1 63 2 67757638 67757657 CATACAACCCTGAATGCACC 59 67757594 67757613 TTAAAGTATGAACCAGGCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000248.1 ENSRNOG00000051844 ENSRNOT00000091348 3 1 1 80 1 6279515 6279536 ATGGCCACTTGATAGAGGG 59 6279451 6279469 CTGACCTCCAGTTGAACCA 59 Novel Rattus norvegicus 81 AC126530.2 ENSRNOG00000053576 ENSRNOT00000074178 2 1 1 80 18 28125451 28125469 AGGATGTGGAGAAAGAGGA 57 28125208 28125229 GTATCCATTCCTCTGAAGGG 57 Novel Rattus norvegicus 81 AABR07000159.3 ENSRNOG00000055508 ENSRNOT00000082003 2 1 1 62 1 1886089 1886108 CTCCGTGCATTTGAGATGAG 59 1886132 1886152 GAGGCTTCGTAAAGAATTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027494.1 ENSRNOG00000061243 ENSRNOT00000077100 2 1 1 91 17 34155591 34155609 TTAAGCGAGAGGTTTGTGG 58 34155664 34155682 GATCTACCAGTTCCTGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044473.1 ENSRNOG00000046314 ENSRNOT00000072845 3 1 1 89 20 6945339 6945358 CGGTCGAGATCAAGAAAGGA 60 6945411 6945434 TCTTGTTAAACCGTTCACCG 59 Novel Rattus norvegicus 81 AABR07068593.1 ENSRNOG00000057081 ENSRNOT00000079170 3 1 1 209 9 110721470 110721488 ATAGTGTGGAGGTCAGAGG 58 110731672 110731690 CTTGTTGCCTTTGTCCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AC120750.1 ENSRNOG00000050522 ENSRNOT00000075001 1 1 1 60 7 123815628 123815647 CACCTGTTCTTGGATCATGG 59 123815587 123815609 CACAGAGATGTTAAGTGCTATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058196 ENSRNOT00000086442 3 1 1 61 6 70134343 70134361 GGCTGTTGTGTCACATGTG 60 70134384 70134404 GCAGAGTGTAGACAAAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055785 ENSRNOT00000089452 1 1 1 60 X 51229580 51229599 GTGATTCAACTGATCTGGCT 58 51229539 51229557 CACATGAACCAGTGAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044385 ENSRNOT00000069652 2 1 1 60 6 29932875 29932895 TTAACAACTAAGCAGGGTCAG 58 29932915 29932935 TCTGTTTGATGTGGATCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000060560 ENSRNOT00000080705 1 1 1 60 16 49592770 49592791 CTGACTGTTCCTTAGCATTTCC 59 49592811 49592830 TTATTGTAAGGCCCAAGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058534.1 ENSRNOG00000048207 ENSRNOT00000054624 1 1 1 64 7 122691127 122691145 GTTGGAATCTGGCACTGTG 59 122691081 122691099 GTATTGTAGGTCCAGGCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037923.2 ENSRNOG00000049961 ENSRNOT00000072460 3 1 1 80 X 35366829 35366852 AGATTTCACCTCACATGCGA 60 35366893 35366913 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 SNORA2 ENSRNOG00000059286 ENSRNOT00000082240 1 1 1 60 X 23782337 23782355 CTTCCTGTGGTTTGTTGGC 60 23782295 23782317 TCTTCCAGATGGAATAGTCACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061148 ENSRNOT00000092071 2 1 1 60 1 75662917 75662935 CGCTTTCTCCAAACATCCT 58 75662958 75662977 GAGTGAGAAATGGCATGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056232 ENSRNOT00000077947 1 1 1 60 17 9764775 9764797 GGAACGATACAGAGAAGATTAGC 59 9764737 9764755 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053829 ENSRNOT00000078373 3 1 1 60 16 81591655 81591675 AGGACACAGAGATTAGCTTGG 60 81591695 81591715 GGGAACACTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0791.1 ENSRNOG00000051069 ENSRNOT00000076801 2 1 1 121 5 74821300 74837517 GTAGTTCTGTGCATCTGGG 58 74954393 74954411 TAGCATCGTCAGAAAGCTG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000057309 ENSRNOT00000091907 3 1 1 80 16 18063961 18063979 GTCTTCACTTTGGCAGCAC 60 18063899 18063917 GTATGCCATCCTTGCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058770 ENSRNOT00000078452 3 1 1 61 2 218295958 218295976 AAAGGTGTTGGAAGTGTGG 58 218296001 218296019 TTTCTCCTCTTTGCCACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000047614 ENSRNOT00000074507 2 1 1 63 X 10497494 10497512 CAGCCATACACCTTGAACG 59 10497449 10497467 CAAGTACTAACAGGCCCGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061092 ENSRNOT00000079271 3 1 1 60 3 163528957 163528978 AATTCAGAGGAGATTCACATGG 58 163528998 163529017 GACAGCTTCCTAGATGTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU2_19 ENSRNOG00000059321 ENSRNOT00000082750 3 1 1 60 1 42477190 42477211 AATAGCCAAATCTGAGCATCAG 59 42477229 42477250 AACTATAGAGATCATGCACCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053403 ENSRNOT00000088789 3 1 1 90 8 115912484 115912502 CTAGAAGCTTGCAGCTGTG 59 115912553 115912574 GGTCAGAATACTGAGCTTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000052027 ENSRNOT00000090353 2 1 1 61 8 70698757 70698778 CAGATCGTATAAATCTTTCGCC 58 70698717 70698736 GACTCAGAGTTGTTCCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067197.1 ENSRNOG00000056666 ENSRNOT00000086407 2 1 1 76 9 34381140 34381159 TAAATGTGATCGCTTCTCGG 58 34381083 34381107 CCAGTGATGTATTACTCTACTACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ACEA_U3 ENSRNOG00000054069 ENSRNOT00000079601 3 1 1 60 10 57319457 57319478 AGTTCGTTACTAGAGAAGTTGC 58 57319418 57319438 GTCTCATCCTCATGGTTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ACEA_U3 ENSRNOG00000057333 ENSRNOT00000079504 1 1 1 60 10 74765422 74765445 ACTAGAGAAGTTTCTCTGACTGTG 60 74765464 74765482 GACGCTATGTCTCGTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053344 ENSRNOT00000088020 2 1 1 61 9 100115226 100115245 GAAGATTAGCATGGTCCCTG 58 100115184 100115203 GTTTCAATGGGATGCTTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059161 ENSRNOT00000090686 2 1 1 61 6 114583667 114583687 AGAGACTATGTCTGCTCAGTG 59 114583710 114583728 GTTCAGGGACTGTTAGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032095.1 ENSRNOG00000058709 ENSRNOT00000085469 1 1 1 60 18 45960515 45960535 AACTGGATTTCCATCTCTGTC 58 45960555 45960577 ATCAGAACTCTTGACTGAAGG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA58 ENSRNOG00000059872 ENSRNOT00000088711 2 1 1 60 6 111468776 111468797 GGAGTTCATGCAAGTTCTAACC 60 111468737 111468757 TGTTGGAGTACTGCAATTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057168 ENSRNOT00000084703 3 1 1 68 15 17864441 17864459 CTGCCATGTCTCACATGTG 59 17864491 17864509 CTGGACACTGAGCAGAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Cfap61 ENSRNOG00000011028 ENSRNOT00000076332,ENSRNOT00000034522,ENSRNOT00000014713 1 3 4 80 3 140160753 140184494 CAAAGCCAGGGTAGAAGAC 58 140184537 140184556 TCGCCGTAAATTTCCTTCAG 59 Novel Rattus norvegicus 81 U2 ENSRNOG00000052327 ENSRNOT00000081092 3 1 1 63 3 150800257 150800280 GGCTAAGATCAAGTGTAGTATCTG 59 150800299 150800320 GATGCATGTGTAAATGTTTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006451.1 ENSRNOG00000029732 ENSRNOT00000050860 2 1 1 60 1 234183525 234183545 CAACAACCTCTTCATTGACCT 59 234183566 234183585 ATGGGTAGAGTCATACTGGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC140988.1 ENSRNOG00000032900 ENSRNOT00000051579 2 1 1 60 3 82971453 82971475 CTATGCACTGTATAACAACTGGG 59 82971495 82971513 TCAGAGTGACTGTTGGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064634.1 ENSRNOG00000038771 ENSRNOT00000040085 3 1 1 60 6 88014086 88014109 GCAGGTAATGCTTCTAAAGATCTC 60 88014127 88014146 CAAGCTGTAAGTGACTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054654 ENSRNOT00000083454 2 1 1 64 9 69810245 69810264 TCTTCTAGTCTCCAGCAGAG 58 69810290 69810309 ATGGTCATAGGTCAGAACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053947 ENSRNOT00000082728 3 1 1 63 9 85305495 85305513 TCATGAGCATCAGAGGTGG 59 85305450 85305474 CAGATGTTCCTATATCAGAACACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041892 ENSRNOT00000063645 3 1 1 60 4 120565978 120565997 ATCTGATCCTGTCTGATCCC 58 120565937 120565956 TCAGGCCAAGTACTAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058757 ENSRNOT00000077951 1 1 1 60 4 125335507 125335527 GTGACTGCTGTGTTACATGTG 60 125335467 125335485 CTGAGTGCAGACATAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057478 ENSRNOT00000082629 3 1 1 60 12 40723580 40723598 ACTTGGCAGAAGAGATCCC 59 40723538 40723557 GCCATGAATAATCCTCACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056698 ENSRNOT00000084411 1 1 1 60 10 80868001 80868020 GCCTCATAACAAGCTCTCAG 59 80867960 80867981 GAATCACTGTGTCTTTACTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056361 ENSRNOT00000077488 3 1 1 60 12 26889662 26889680 GAGACTGTACTTGCCTGCT 59 26889620 26889642 AGAACCCGTAATCTACTCTTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07011857.1 ENSRNOG00000045839 ENSRNOT00000074961 1 1 1 80 2 172896032 172896054 AGATTTCACCTCACATGCG 58 172896097 172896116 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000057429 ENSRNOT00000085406 1 1 1 60 3 174961060 174961080 CCTGATCTCATCTGATCTTGG 58 174961020 174961039 TCCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060392 ENSRNOT00000088913 1 1 1 60 17 31777160 31777179 TCAGTGCTGTATCACATGTG 58 31777119 31777137 TGGGCAGACATAGTGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060964 ENSRNOT00000082389 3 1 1 73 2 189956149 189956167 GGATGAGGCTCATTCTGTG 58 189956094 189956113 ACAACACAATTATGCAGCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036920.1 ENSRNOG00000046063 ENSRNOT00000072290 1 1 1 60 X 7050823 7050842 GAACCTTGTTGCTGAAATCC 58 7050864 7050883 TGCCTCATCCTTAACTTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054541 ENSRNOT00000082881 3 1 1 60 2 95306963 95306981 TCAGTAGGTGGCATAGAGG 58 95307003 95307023 AGATGTTCATAGGTCAGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041942 ENSRNOT00000063695 2 1 1 60 X 136888055 136888074 GTGCCTGATACTGTCTTAGC 58 136888095 136888115 ATACGACATACTTGCAATGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000052922 ENSRNOT00000082720 2 1 1 60 2 73246960 73246980 GCGATGATCATTCCCATTAGG 59 73247002 73247020 TCCCAACAGGTTAAGTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038786.1 ENSRNOG00000052270 ENSRNOT00000078053 2 1 1 62 X 60715570 60715588 AGTCATCAATCCGGTTCCA 59 60715347 60715368 TCTCTTGGTCTTCTTTGTTGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027009.1 ENSRNOG00000041433 ENSRNOT00000063186 2 1 1 60 17 10572352 10572370 CTGCTCATTTCCCTATCCC 57 10572310 10572329 TACTGAGTGCTTACCAGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051851 ENSRNOT00000083882 1 1 1 60 12 38654193 38654214 CTCCCAAATGCAAGAAATTCAG 59 38654154 38654172 GAGCATGAACACAGTCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053752 ENSRNOT00000082957 2 1 1 60 17 90799710 90799729 CAAGGGTATACGAGTAGCTG 57 90799669 90799690 TAAGTCTTGAGAGCTTGTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114111.2 ENSRNOG00000057190 ENSRNOT00000091092 2 1 1 82 7 70487984 70488004 AGAGTCAGACCTCAGACAG 58 70488050 70488068 AGAAATAGTTGCAGGCAGG 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000052985 ENSRNOT00000078584 1 1 1 60 12 46248020 46248038 ACTGTTCTTGGGTCAAGGG 60 46248059 46248080 GCTTGCTTGGATATTCTAGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC109958.1 ENSRNOG00000021960 ENSRNOT00000030811 1 1 1 88 13 93560585 93560609 CTCAGCTACTCTACAAATTTGAGAG 59 93560520 93560539 TCCAATTCGAACCTGGGAC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055409 ENSRNOT00000081982 1 1 1 60 X 96978000 96978018 ACACATGTGTCAGTAGGTG 57 96977958 96977979 TGTCAGAATACTGATCAGAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Chd9 ENSRNOG00000049302 ENSRNOT00000076830,ENSRNOT00000078786 3 2 4 61 19 17402070 17402088 CCATTCTGAGGTTCCTGCT 59 17402027 17402051 CACCAATAAGAAGAGACTTATCAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000053796 ENSRNOT00000082263 2 1 1 60 10 57319447 57319468 TAGAGAAGTTGCTCTGACTGTG 60 57319408 57319428 GGGACACTATGTCTCATCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053464 ENSRNOT00000083738 1 1 1 60 1 201879170 201879189 TCACATGTGCATCAATAGGT 57 201879211 201879230 GTCAGAACACAAGGGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050317.1 ENSRNOG00000052409 ENSRNOT00000080134 1 1 1 85 5 160825578 160826726 GGCATACCATACTCCGACTC 60 160826776 160826794 CTCCAGCTGGAAGTCAGAG 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000060191 ENSRNOT00000081341 2 1 1 60 12 43981847 43981865 GGGAAGAAGACACCCTGAG 59 43981889 43981907 GCTCTTGACAGAGGACCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055479 ENSRNOT00000085539 1 1 1 98 1 199494520 199494540 AGACACTATGATCAGGAAGGT 58 199494442 199494461 TTGAGAATCCTGGATTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057946.1 ENSRNOG00000058406 ENSRNOT00000067707 2 1 1 60 7 95019991 95020010 GGTGACCCAAGAATACACCA 60 95020033 95020051 CTTCTTGAAGCCCACTCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054290 ENSRNOT00000088250 3 1 1 60 2 38358872 38358894 GATACAGAGAAGATTAGCATGGC 59 38358834 38358853 GAACGCTTCATGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000076887,ENSRNOT00000076831 2 2 5 81 6 114770908 114780361 ACCTTTAGGAACTCAATGTGTC 58 114770848 114770866 AGTGATCTAGGCCATGAGC 59 Novel Rattus norvegicus 81 LOC100360296 ENSRNOG00000061094 ENSRNOT00000091278 3 1 1 80 X 73358873 73359920 GGAACAGCCTCAAGATAACAC 59 73358813 73358834 TTGATCCAGCCATAGTAATTGC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000044193 ENSRNOT00000069460 2 1 1 60 14 66685019 66685037 AGAACAGGACCAAGACAGC 60 66684977 66684995 TCCCAACCAAGTACCAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004539.1 ENSRNOG00000056733 ENSRNOT00000086862 3 1 1 82 1 147270598 147270619 ACAGAGACAACTAGTACAACCC 60 147262624 147270555 TCTTCCTGGACTTTGGCTG 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000059283 ENSRNOT00000090130 2 1 1 60 14 21783063 21783081 CTTGGTCGAAGATAGCCCT 59 21783101 21783123 TACTATACCCTCAACCAAAGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562392 ENSRNOG00000031833 ENSRNOT00000050420,ENSRNOT00000082579 3 2 2 80 9 4276825 4276977 TATGAAGAGGGACCCAAAGC 60 4277018 4277038 TTATCCACGACCTCTTCATCC 59 Novel Rattus norvegicus 81 Rn60_13_0828.1 ENSRNOG00000049537 ENSRNOT00000076385,ENSRNOT00000076888 3 2 2 145 13 77785097 77785115 CAAGTCACTTCAGACAGCA 58 77818897 77818915 CACAGAACACGGTGTTAGC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA19 ENSRNOG00000058604 ENSRNOT00000088265 3 1 1 60 2 198316046 198316066 CTTGGAGGTATATTAGCAGCA 57 198316087 198316106 TTTGTCTGAAGGTGACTGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061732 ENSRNOT00000081698 1 1 1 60 2 198515670 198515688 GCAGATTCCCGTAACTTCC 58 198515707 198515730 CTCCAAATAATACAAGTCAGGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052820 ENSRNOT00000082690 2 1 1 60 14 3385290 3385308 TCAGTCTGTGGTATGTGGG 59 3385331 3385350 TCTGAGAGCTTGTTTGGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910057 ENSRNOG00000047369 ENSRNOT00000085330,ENSRNOT00000061864 2 2 3 80 9 4100424 4103338 TGGACAAACAACTGTAAGTTCC 59 4103375 4103397 CATCCTGTAGAAGTGGTAGTAGG 60 Novel Rattus norvegicus 81 LOC100910057 ENSRNOG00000047369 ENSRNOT00000084331 2 1 3 107 9 4072913 4080824 CACTAACTGTCTGCTTCTGC 59 4081472 4081491 CTAGCTGCTGTAATCTGCTC 58 Novel Rattus norvegicus 81 AABR07066135.1 ENSRNOG00000055764 ENSRNOT00000077570 2 1 1 80 9 3817662 3817684 CTATCATTGGAAACCAGATTCC 57 3817722 3817743 TATGTATGTCCTTAATAGGGCC 57 Novel Rattus norvegicus 81 AC136795.1 ENSRNOG00000061236 ENSRNOT00000084043,ENSRNOT00000092119 1 2 2 80 10 4488838 4489606 GATCAGAGTGTCTTTGCCT 57 4489647 4489668 GGTGAATCACATTCATCTTTGG 58 Novel Rattus norvegicus 81 AABR07004992.1 ENSRNOG00000052236 ENSRNOT00000086302 3 1 1 140 1 173284394 173284412 GACTCTTCCAAGGACATGG 58 173284527 173284545 TATCCTGTAGTTGCCCAGC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000061330 ENSRNOT00000089797 2 1 1 60 4 10104155 10104174 AAGGCTATGTCTGCTCAGTG 60 10104194 10104215 GAAGTAAGGCTACCAATCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000060507 ENSRNOT00000077385 1 1 1 62 1 282155557 282155577 CTGATGTTAAGGTTTGAGAGC 57 282155515 282155533 GTAACTGACAGAAGTGGCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA16 ENSRNOG00000061622 ENSRNOT00000081692 2 1 1 60 10 106022209 106022227 GTAAATTCCCGGAGGAGCA 60 106022250 106022269 GATGCTCACACCTGTTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07011708.1 ENSRNOG00000048557 ENSRNOT00000071263 3 1 1 70 2 166850504 166850522 TGAGATCCAGCTGTAAGGC 59 166850555 166850574 GATGTTACTACCCACAAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051926 ENSRNOT00000084810 3 1 1 60 14 43500180 43500198 TCATCTCACTGATTGCCGT 59 43500221 43500240 GGGAGGACATTTATCTAGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043249.1 ENSRNOG00000057493 ENSRNOT00000074744 2 1 1 81 19 26787996 26789905 GCTCAACAACGTAATGAAGTC 58 26789945 26789966 AAGGCTGAATAGTAAAGGTCTG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000054090 ENSRNOT00000091434 3 1 1 61 17 24500597 24500619 TAGAAGGGTACAGAGAAGATCAG 59 24500640 24500658 CTTCCCACATTTGCAGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060953.1 ENSRNOG00000053327 ENSRNOT00000087901 1 1 1 73 4 101645800 101646199 TAATGCTCTGGATCCAGGA 58 101646236 101646254 AATGGCAACCGACAAAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07040430.1 ENSRNOG00000056486 ENSRNOT00000091859 1 1 1 61 X 100207596 100207614 TACTACCACCAATGCCAGC 60 100206262 100206849 TCTCGACAATCTTTCCTGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AC134632.1 ENSRNOG00000046877 ENSRNOT00000071225 2 1 1 69 12 47458489 47458507 CTCTGTAGATCAGGCTGGC 60 47458438 47458456 CTTTAGTCCCAGCACTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035312 ENSRNOT00000053435 2 1 1 60 14 93047344 93047363 AACACGTCCAAACTCATCTG 59 93047303 93047321 CCAAGTACTAACCAGGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012072.1 ENSRNOG00000047458 ENSRNOT00000072115 1 1 1 77 2 184826993 184827011 AGCAATGAATGCTTCAGGA 57 184826934 184826954 ATGATCATCTGAGGATGACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000057523 ENSRNOT00000083532 1 1 1 60 1 116714859 116714879 CAACAGAAAGACAAGAACAGG 58 116714819 116714840 CTCAGCATAATCCTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000052722 ENSRNOT00000079082 1 1 1 60 1 116723489 116723511 GACAACAGAAAGTCTAGAACAGG 59 116723451 116723470 AAGCATGGATCAATTCAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027811.4 ENSRNOG00000053845 ENSRNOT00000083765 1 1 1 60 17 44748680 44748698 GTGAACGACATCTTCGAGC 59 44748721 44748740 GCTTGTTGTAATGAGCCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058723 ENSRNOT00000085731 2 1 1 60 2 264523450 264523469 TGTCCCTAGAAGTGATGCAG 59 264523492 264523510 CTCTGCCACCTACTGACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.14 ENSRNOG00000050488 ENSRNOT00000075299 2 1 1 60 1 121219405 121219424 GCTGCTGGTTATATTCCAGG 59 121219364 121219383 ATTTAACAGTCGGGCTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA27 ENSRNOG00000058033 ENSRNOT00000081251 1 1 1 63 12 9997685 9997703 CATTGGCCATTCAAGTGGG 60 9997640 9997661 CAAACACTTAAGTTTGCCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053505 ENSRNOT00000079244 1 1 1 60 1 15778209 15778230 CGATACAGAGAAGATTAGCTCG 58 15778249 15778269 GAATCTTCACGAATTTGCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000053880 ENSRNOT00000088346 3 1 1 60 1 6440082 6440103 CCAGGATCTGTCCTAGTAAAGG 60 6440124 6440142 TGTAAACAAGGTTGGCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA11 ENSRNOG00000061556 ENSRNOT00000086360 2 1 1 62 1 89994494 89994513 CCTGAAGAATGGCTTCTCTG 58 89994451 89994469 CCACATTTCAATGGTCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061143 ENSRNOT00000083828 1 1 1 60 14 59631228 59631246 CTCTGAATGTGCCAACTCC 59 59631268 59631288 CAATTATGCAGTTGAGTTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA68 ENSRNOG00000055783 ENSRNOT00000087315 1 1 1 60 2 205314531 205314549 GATTGGTATGCGCCTTTGG 60 205314570 205314591 TAGAATCTCCTGATGCACTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.4 ENSRNOG00000046914 ENSRNOT00000072529 3 1 1 60 1 121227143 121227162 AGATCTGATCAGTCAGGCTG 59 121227102 121227120 TGGTTATACCCAGGACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054509 ENSRNOT00000077872 2 1 1 60 1 148033348 148033369 ATACAGAGAAGATTGGCATGAC 58 148033389 148033408 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000055386 ENSRNOT00000079619 3 1 1 60 1 188542951 188542971 GAAGAGCATGTTCTTGATTGG 58 188542992 188543011 AAGTCCCAGTCCAGTATCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128154.1 ENSRNOG00000060588 ENSRNOT00000090067 3 1 1 80 10 46483992 46484012 AAATGGCAGGGATACATCTG 58 46483930 46483949 GGCCAAGACATCTATAGCAC 58 Novel Rattus norvegicus 81 Rn60_20_0046.5 ENSRNOG00000059825 ENSRNOT00000086128 2 1 1 60 20 2489071 2489092 TCACATGATTAGAGTCAGACCC 59 2489032 2489051 GCTGATTCGGTGGATAAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000055268 ENSRNOT00000078933 3 1 1 60 6 91633156 91633176 TTGCACATCTTATTGACCTGC 59 91633116 91633137 AGCACGTAAGAAATAACACTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056048 ENSRNOT00000086645 2 1 1 60 14 107917859 107917877 CTGCTGTGTCACATGAGAG 58 107917817 107917837 TGTTCTTAGGTCAGAACACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000052538 ENSRNOT00000090677 1 1 1 60 1 116744567 116744588 GACAACAGAAAGTCAAGAACAG 58 116744528 116744547 CAGCGTAATCCTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000052538 ENSRNOT00000090677 2 1 1 61 1 116744567 116744588 GACAACAGAAAGTCAAGAACAG 58 116744527 116744547 TCAGCGTAATCCTATTGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000059083 ENSRNOT00000086713 3 1 1 61 1 238986083 238986101 AGAGACTTTGACAGCCCAG 59 238986124 238986144 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000061349 ENSRNOT00000081921 3 1 1 60 2 84566325 84566347 CATCCCTTCTTAACACGAAAGAC 60 84566367 84566385 GCAGTTAGATGGTGATGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055905 ENSRNOT00000079284 3 1 1 60 2 131853895 131853915 GTATTGAAGATGTGGCTGCTC 60 131853937 131853955 TACTCTCATCTCTGCCACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000055060 ENSRNOT00000082784 1 1 1 60 1 116719954 116719974 CAACAGAAAGACAAGAACAGG 58 116719914 116719935 CTCAGCATAATCCTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Cylc1 ENSRNOG00000056740 ENSRNOT00000086866 3 1 1 87 X 82295540 82297038 CATGTTAATCCGTCAAACTAGG 57 82297083 82297104 CTTCTTCATATCTGGCATAGGT 58 Novel Rattus norvegicus 81 AABR07059632.3 ENSRNOG00000061046 ENSRNOT00000091075 1 1 1 80 4 28224622 28224640 GCAGATCCCAGACCTTCAG 60 28224440 28224580 GATGCAGTAGAGCCTGTAGAG 60 Novel Rattus norvegicus 81 AABR07059632.3 ENSRNOG00000061046 ENSRNOT00000091075 3 1 1 83 4 28220963 28220987 AGAAAGAAGAGATTCAGTCCCT 59 28220901 28220919 TCTGTTGTGTACCCTCGAG 59 Novel Rattus norvegicus 81 SNORA36 ENSRNOG00000056544 ENSRNOT00000084387 2 1 1 65 4 169403524 169403543 GTATTCAGTGCAGTTCAGGG 59 169403569 169403589 GCCAATTTCAATGTTCCAACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054261 ENSRNOT00000091871 3 1 1 60 4 17910536 17910556 GGTCAAGGGTATATGAGTAGC 58 17910578 17910596 GGACTCAGAGCTTGTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000059457 ENSRNOT00000080661 3 1 1 63 5 150492366 150492384 CCATAGCCATGGGATCTCC 59 150492321 150492339 ATACCTGGGCTGTCAAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056403 ENSRNOT00000085602 1 1 1 60 5 111649890 111649913 ATACAGAGAAGATTAGCCTGATCC 60 111649853 111649873 CGAAATGCTTCATGAAGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059228 ENSRNOT00000088862 3 1 1 60 5 118496275 118496294 CTGGAACGGTACAGAGACTC 60 118496234 118496252 TGCTTCATGGATTTGCGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006327.1 ENSRNOG00000041469 ENSRNOT00000063222 3 1 1 67 1 229066001 229066020 ATTGGAAGAAGGAAGATCCC 57 229065953 229065972 GATCTAGCAGTTGCTCAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060428 ENSRNOT00000092221 2 1 1 80 2 4843189 4843209 CCAATGAAGTTTATCTGAGGC 57 4843251 4843269 TTTGAGAAGATCCCTGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000053704 ENSRNOT00000088668 1 1 1 89 6 110596647 110596665 CTGTGGTCAGGATAGGCAG 60 110596718 110596736 CTAGAGGTGGTCACTCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000055924 ENSRNOT00000084262 1 1 1 60 1 213460768 213460788 TAAACCTACCCTGTGTACACC 59 213460809 213460828 CCCATTCACAATACAGACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07001064.1 ENSRNOG00000017678 ENSRNOT00000023779 3 1 1 80 1 36954964 36954983 ACTCCACTGATGTCAAACCA 59 36954901 36954926 GTTATTCAGAGGTTCCATCTTTGG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055710 ENSRNOT00000086108 1 1 1 60 14 52485803 52485822 TGTGTCAGTAGGTTGCAGAG 60 52485762 52485780 TCAGATGCCCATAGGTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053682 ENSRNOT00000081479 1 1 1 71 14 57833355 57833373 ATAGCTGGTTTCACCAGGG 59 57833408 57833426 CTTGAGGGAAATCACAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021005.1 ENSRNOG00000025964 ENSRNOT00000011332 1 1 1 60 13 53067815 53067834 TCAGCAAAGTGTTCTTCACC 59 53067856 53067875 CATCTGTGATACTGTCCGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055539 ENSRNOT00000079321 1 1 1 62 3 83589456 83589479 CAGAGGCTATGTCTACATTTAGTG 59 83589497 83589518 CGCCATGCTACTAATAATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA18 ENSRNOG00000058492 ENSRNOT00000081545 3 1 1 61 14 82341613 82341633 GCCTCGTATAGTAACTTGTGG 58 82341572 82341590 CCTTCCCACAGACCTAACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044838 ENSRNOT00000070105 3 1 1 82 10 27204940 27204958 GTTTATGGCCATAGCACCA 58 27204876 27204895 ATTCAAGTACAAACCAGGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA31 ENSRNOG00000054254 ENSRNOT00000079669 1 1 1 61 14 81589138 81589161 CTCATACTACCAGACATCTTTGTC 59 81589175 81589199 TACATCTGTAATAGACACCTTAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053173 ENSRNOT00000091876 2 1 1 60 14 33899773 33899795 GATACAGAGAAGATTAGCATGGC 59 33899735 33899753 GGAAGCTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA28 ENSRNOG00000055908 ENSRNOT00000088162 1 1 1 60 6 136005857 136005875 TGACACAATTTGAGCTTGC 57 136005899 136005917 CAGAGAAGAGAACACCGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA66 ENSRNOG00000061409 ENSRNOT00000085510 2 1 1 60 14 2863673 2863692 GCAAACTCGATCACTAGCTC 59 2863632 2863650 TCTAGCAAACCTGGTTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA76 ENSRNOG00000051736 ENSRNOT00000082054 2 1 1 60 14 21268222 21268241 CTTTGCTGGAGCATAACTGG 59 21268181 21268201 TAGCTAGCAGTTAAAGGGACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142154.2 ENSRNOG00000060459 ENSRNOT00000083650 1 1 1 80 1 83573196 83573358 GGGATATGGTGTGATCTTTGC 59 83573399 83573418 CCGAAGTTTCTCATGGTGAC 59 Novel Rattus norvegicus 81 AC142154.2 ENSRNOG00000060459 ENSRNOT00000083650 3 1 1 81 1 83573196 83573358 GGGATATGGTGTGATCTTTGC 59 83573401 83573419 CCCGAAGTTTCTCATGGTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000060363 ENSRNOT00000078777 2 1 1 60 1 143496592 143496610 TGCTCATGAAGTAGCACGT 59 143496634 143496652 GGGCCAGACTAATCTTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053509.1 ENSRNOG00000057149 ENSRNOT00000084122 1 1 1 80 3 111815925 111815948 ATTCTCACAGTTTCTCGAATGG 59 111815862 111815881 TGAGTCCCTGAAACTTGTCC 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000058835 ENSRNOT00000081774 2 1 1 60 3 163446976 163446996 GTCAGCTAGTCAATCAGTCAG 58 163447018 163447036 AGAAAGGAAGGGACATCGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052019 ENSRNOT00000089598 2 1 1 60 1 224887133 224887152 ATTTGACATCCCATTTGGCT 58 224887092 224887110 AAACTTGCTTATCCAGCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073360.1 ENSRNOG00000059178 ENSRNOT00000083006 2 1 1 61 8 13223535 13223557 AAGTTGCTTCTGATGTCGG 58 13223582 13223600 CTCCTGCTCATCATGTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006591.1 ENSRNOG00000056301 ENSRNOT00000084204 3 1 1 70 1 241771596 241771615 TAGAGACATCTCTGGCTGTC 58 241771650 241771668 GTTTCAGAGTGTGGAGCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042629.1 ENSRNOG00000055757 ENSRNOT00000089516 2 1 1 62 19 426226 427418 AGAGATCCAAGAACAACAGGG 60 427436 427460 CCAGGTCTTCATAATATGGATTTGG 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA25 ENSRNOG00000053665 ENSRNOT00000079107 1 1 1 60 12 39008146 39008164 AGTTCTCCACAGGATTCCA 58 39008186 39008206 AAATAATAGCACTGTGGAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060282 ENSRNOT00000078813 3 1 1 62 12 23767293 23767312 TTGAGGAGATTAGATGGCCC 59 23767337 23767355 AAACATGGAACGCTTCACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014524.1 ENSRNOG00000055589 ENSRNOT00000079822 3 1 1 80 14 19281748 19281767 GCAAACAGCATTTGTTGGA 58 19281814 19281832 GTCATCTTCTGAAGAGGCG 58 Novel Rattus norvegicus 81 AABR07035194.1 ENSRNOG00000055786 ENSRNOT00000087840 3 1 1 80 12 6625776 6625797 TATCGGGCAAATAGAACAACTC 59 6624797 6625737 TATGTGCAGAAAGTATCCCAC 58 Novel Rattus norvegicus 81 ENSRNOG00000056537 ENSRNOT00000078258,ENSRNOT00000090885 2 2 2 85 13 96009580 96009602 GGACAGTATCCTGTCATATACAC 58 96009647 96017768 TGAATGATCCAGGTTCCGT 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000051940 ENSRNOT00000083893 1 1 1 62 5 6241058 6241076 ATGAGGTTTATCCAAGGCG 58 6241014 6241033 ACAAAGCATGAGCTTTAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115181.1 ENSRNOG00000058984 ENSRNOT00000082295 3 1 1 92 10 14136905 14136925 CACACTCACATACACATTCAC 57 14136977 14136997 GTGTGAGTGTATGTGTTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059829 ENSRNOT00000088708 2 1 1 60 10 20434383 20434401 TGGCAAAGGTGTAACATCC 58 20434423 20434443 GCCACATCAGTAGAATCAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040690.1 ENSRNOG00000055939 ENSRNOT00000092013 3 1 1 70 X 107634279 107634299 ATACAGTCGTTCGCTGGAG 60 107634333 107634351 TCATGGACTTGGCTTAGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07002711.1 ENSRNOG00000041518 ENSRNOT00000063271 3 1 1 62 1 82585804 82585824 GTATGTATGCATGTGCATGTG 58 82585762 82585780 CACATGTAAGGGCACATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057845 ENSRNOT00000078090 3 1 1 60 1 215027280 215027300 CTGAAACTGGGACAGTATGGA 60 215027240 215027260 GAATCTCTGTCATCCTTGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004021.1 ENSRNOG00000047301 ENSRNOT00000071117 2 1 1 60 1 122653679 122653697 CAGCTCTAAGCTGGATCCA 59 122653637 122653657 CTTCTCTATTGAGCAGAGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Dppa1-ps1 ENSRNOG00000028544 ENSRNOT00000037099 1 1 1 60 12 4516887 4516905 GTCTCCTACTCCTTCTCCC 58 4516927 4516947 CAAAGCTGATCTGATGATGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052261 ENSRNOT00000086384 3 1 1 60 7 36004959 36004977 GATCTGGCTGTGATGTCTG 58 36005001 36005019 CAGCCAGCTTAGTCAACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017783.3 ENSRNOG00000054804 ENSRNOT00000084028 1 1 1 80 15 31041982 31042177 GATTTGCTGGGTGAGAGGA 59 31042219 31042239 CTCAGAGAAGAATTGGTTCCC 58 Novel Rattus norvegicus 81 AABR07041725.1 ENSRNOG00000040189 ENSRNOT00000061851 2 1 1 114 X 137818862 137818882 TTGGACCAGAGAAACACCT 59 137818766 137818790 GTCTCCCTTTATATGTTACTTGACC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000060877 ENSRNOT00000081491 2 1 1 60 9 26957092 26957110 GAGAGGAGAAAGGCTACGT 59 26957050 26957070 GAGGACCAACTAATAGCACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052399 ENSRNOT00000086838 1 1 1 60 13 89209406 89209424 CGGCACTGAGAACATTAGC 59 89209364 89209384 GATCGCTTTATGAATGTGCGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055077 ENSRNOT00000089186 3 1 1 60 9 120323370 120323392 ATGCCAGTAGGTAGTAAAGAAGG 60 120323332 120323353 TTCATAAGTCAGAACACTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017617.2 ENSRNOG00000054267 ENSRNOT00000092212 3 1 1 88 15 29291272 29291420 TCTTAGTGTTTGGAGGAAGC 58 29291203 29291221 GTTCACAGTCAGAGAAGCC 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000060811 ENSRNOT00000079752 2 1 1 60 5 151858784 151858806 GATACAGAGAAGATTAGCATGGC 59 151858826 151858844 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041720 ENSRNOT00000063473 1 1 1 60 1 28595998 28596020 TCTGGTTTCAGAATCTAGACAGG 60 28596040 28596058 GTATTCCCAGGCAGTTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044063.1 ENSRNOG00000053910 ENSRNOT00000078002 3 1 1 84 19 54494637 54496054 ATACATAGGAAACCCTTCACTG 58 54496823 54496842 GATGAAACAGTGTTGTGACC 57 Novel Rattus norvegicus 81 U1 ENSRNOG00000055477 ENSRNOT00000091269 2 1 1 60 1 163463411 163463431 CCAAAGTTCAGGAAACTTGAC 58 163463452 163463471 GAGAGCATGAACCTAGTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059526 ENSRNOT00000092183 1 1 1 60 5 59887330 59887351 AGAGCAGAGACCATGTATACAC 60 59887291 59887313 GGCTACTAACATTCAGATGTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044566 ENSRNOT00000069833 3 1 1 60 1 255816903 255816923 ACCCTATCCTCAACCTATCTC 58 255816943 255816963 CTCCCATCCAAGTACTAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013566.1 ENSRNOG00000056490 ENSRNOT00000074243 3 1 1 81 2 244549850 244549872 TCACCTCACACCAGAATGG 59 244549916 244549935 GGAGTGTTCCTCTTTCTCCA 59 Novel Rattus norvegicus 81 Rn60_9_0975.2 ENSRNOG00000059440 ENSRNOT00000079081 1 1 1 60 9 97784918 97784937 AGTCAAGACAGAGATGAACC 57 97784959 97784978 TTCAAGTTGTTTCCATGCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_9_0975.2 ENSRNOG00000059440 ENSRNOT00000079081 2 1 1 60 9 97784920 97784939 TCAAGACAGAGATGAACCCA 58 97784959 97784980 CTTTCAAGTTGTTTCCATGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013288.1 ENSRNOG00000048336 ENSRNOT00000070836 1 1 1 60 2 231875459 231875477 CGTCACTGCTGCTAATCTG 59 231875499 231875519 CCATTGCTAAAGTGCAATTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA52 ENSRNOG00000057438 ENSRNOT00000077626 2 1 1 61 14 43587200 43587219 ATCCTAATCTGGACCAGAGC 59 43587158 43587176 AAACAAACAGGCCTTGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056056 ENSRNOT00000079716 1 1 1 60 14 52980940 52980963 GATACAGAGATTATTAGCATGGCC 59 52980903 52980921 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Adora3 ENSRNOG00000050743 ENSRNOT00000082943 3 1 1 80 2 208373762 208373780 TTCCATCATGTCCTTGCTG 58 208373820 208375729 GTGGTAACCGTTCTATATCTGAC 59 Novel Rattus norvegicus 81 SNORA42 ENSRNOG00000054476 ENSRNOT00000080214 1 1 1 60 3 86024972 86024991 ACTGTGTCTGAGACATCTCC 59 86024931 86024949 CATTCCACTTCAGTGCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015907.2 ENSRNOG00000057861 ENSRNOT00000080341 3 1 1 60 14 85277073 85277092 TTCCTCTTCCTGAGTGTCTC 59 85277111 85277133 CCTTTAGTCAGTTTCTTAGAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017878.1 ENSRNOG00000061789 ENSRNOT00000081436 1 1 1 97 15 32188776 32188984 AGTTTCATTGGGTGAGCAG 58 32189044 32189063 ACTGAATGTGCAGTTGAGAG 58 Novel Rattus norvegicus 81 AC097037.2 ENSRNOG00000033186 ENSRNOT00000052060 1 1 1 60 15 32917175 32917193 CAGATGGTCACTGATGTCC 58 32917133 32917152 CCCGAATTTCTGTCTTTGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061473 ENSRNOT00000088973 2 1 1 60 14 41243128 41243147 TGGTGGCTATGTTACATGAG 57 41243168 41243188 GAGCATAAGATACAACCGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD24 ENSRNOG00000060649 ENSRNOT00000091054 2 1 1 60 13 78853457 78853476 TTGCTACTCTTGACAGTTGG 58 78853496 78853517 GCCTCAGTTATGATTAATGGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068030.1 ENSRNOG00000055318 ENSRNOT00000086984 1 1 1 86 9 78295401 78295421 TCCGCTTTCTACTGCTCAC 60 78295333 78295352 AATTCTTGGTGGCAAGAAGC 60 Novel Rattus norvegicus 81 AABR07068030.1 ENSRNOG00000055318 ENSRNOT00000086984 3 1 1 92 9 78295482 78295500 GTAAAGTCGCACAGCTGTG 60 78295402 78295422 TGAGCAGTAGAAAGCGGAG 60 Novel Rattus norvegicus 81 AABR07061459.1 ENSRNOG00000052174 ENSRNOT00000080234 1 1 1 60 4 126071214 126071232 TGCAGACATGTTGGAAGAG 58 126071172 126071190 TTCCAAGACCTGAGTAGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013802.1 ENSRNOG00000058222 ENSRNOT00000081427 3 1 1 60 2 257462534 257462554 AACTACCTTATTCTGCACCAG 58 257462576 257462597 AGTGATGCTAGTGTCTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07044711.1 ENSRNOG00000026519 ENSRNOT00000039144 1 1 1 78 20 18046145 18046163 TGTTTGCGTCTTTCATCCG 59 18046204 18046355 TGAGCTAGGAAGACCTTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 U11 ENSRNOG00000053931 ENSRNOT00000081762 1 1 1 60 1 20389054 20389074 ACATCAAGAGATTTCGGAAGC 59 20389096 20389114 GGACCAATGATCACCAGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032751.1 ENSRNOG00000060359 ENSRNOT00000077553 2 1 1 149 18 79854915 79854933 CCTTAGTCACGCAAGTCCA 60 79855048 79855066 AGAAGTATCGCCACCACAC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA70 ENSRNOG00000058078 ENSRNOT00000090487 3 1 1 61 13 105109971 105109991 CAGCCAATTAAACCAGTCAGG 60 105110014 105110032 GTTTATGGCCCTTGCACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021530.1 ENSRNOG00000047609 ENSRNOT00000071148 2 1 1 60 13 76855851 76855872 CCTAGTTTGTCTGATTCAAGCA 59 76855812 76855831 GGCACAAACAATTACTTGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053788 ENSRNOT00000079577 2 1 1 60 20 3022141 3022162 TAACTAGCTCTAAGGATGTCCC 59 3022181 3022201 TGGGTTAAATGCACGATTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056284 ENSRNOT00000086655 1 1 1 60 6 74187165 74187183 GAGAAGATTAGCATGGCCC 58 74187207 74187225 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057483 ENSRNOT00000079839 2 1 1 60 7 31713762 31713783 GGAACTATCCAAAGATTAGCGT 58 31713804 31713822 ACTGCTTCATGATTTGCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061068.2 ENSRNOG00000060654 ENSRNOT00000087659 1 1 1 80 4 103524359 103524709 TTGGATTCCAGCTTCCAGG 60 103524751 103524771 GAAGCTTGATCTCCAAGTCTG 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000044719 ENSRNOT00000069986 2 1 1 60 5 25704513 25704532 TGATCTCGGAGGTTAAGCAG 59 25704554 25704573 TGAGAACTTCTGTCCTGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060792.1 ENSRNOG00000057220 ENSRNOT00000090783 2 1 1 60 4 93888505 93888523 ATCCAGATGACCCAGTCTC 58 93888545 93888565 TAATAGTGACTCTGTCTCCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA62 ENSRNOG00000061901 ENSRNOT00000086861 3 1 1 60 3 146447903 146447922 AAGCAGGATTTCGCTAACAC 59 146447944 146447963 TGATCACTACCGAACTCCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060068 ENSRNOT00000079594 2 1 1 60 13 107096098 107096118 GCCATATGTGTATCAGTAGGT 57 107096058 107096076 CAGAACACTGAGTGCAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000053758 ENSRNOT00000078165 3 1 1 61 3 58061416 58061434 AGTTGGATTAGGAGCTTGC 58 58061459 58061477 TTCCTGGAGGTGCAATACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052435 ENSRNOT00000082238 3 1 1 60 20 46568804 46568825 TGGTTAAGCATACACAAGTGAC 59 46568765 46568783 CCTTGAGAGCTTGTCTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034751.1 ENSRNOG00000060656 ENSRNOT00000079948 3 1 1 83 11 87484242 87485768 ACTTCGGGTTCTGATTATTTCC 59 87484180 87484198 GATTTGTTGCTCCGGACAG 59 Novel Rattus norvegicus 81 AABR07014836.1 ENSRNOG00000002127 ENSRNOT00000002894 2 1 1 61 14 33596973 33596991 CCCAGAGATCACAGAAGGT 58 33596929 33596948 AATTGTAAGCGCAGTGACAG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000054004 ENSRNOT00000092124 1 1 1 60 20 32909244 32909265 GCATTAATAGATTGCAAGGAGG 58 32909284 32909304 TATTCAGGTCAGAACACTGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054004 ENSRNOT00000092124 2 1 1 60 20 32909259 32909279 AAGGAGGAGAAAGGCTATGTC 59 32909295 32909319 CTGATCATTCAGATGTATTCAGGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120322.1 ENSRNOG00000048629 ENSRNOT00000074922 1 1 1 60 10 83780204 83780222 CTGGAGATCAGGTTTGCAC 59 83780162 83780182 AGAGATCAGGATTCCTCACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000057213 ENSRNOT00000081782 2 1 1 60 5 73513631 73513651 GTTTCGATTTATGGCAGACCT 59 73513591 73513609 AGCAAGGGTTCTAGCAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 pRNA ENSRNOG00000053483 ENSRNOT00000091120 2 1 1 62 20 56182823 56182841 GTACCAGGCATGACTTCCA 59 56182779 56182797 CAATAACGGGACAGGGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA67 ENSRNOG00000058929 ENSRNOT00000087868 2 1 1 60 13 78079657 78079675 GAAGGTGATTCCCTCTCCA 58 78079615 78079633 TTCCAAGGTGCTACATTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000050378 ENSRNOT00000074028 1 1 1 60 18 29968534 29968553 TTTAGCCCAAGTCTTACACC 58 29968576 29968594 CTCCAACCAGTTTGTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000047655 ENSRNOT00000071216 3 1 1 117 3 18805261 18805436 TTTCACACTATTCACAGTGTCC 59 18805513 18805532 ATTTACACTTGAGCTGGCAC 59 Novel Rattus norvegicus 81 SNORA2 ENSRNOG00000054530 ENSRNOT00000089976 2 1 1 60 4 118589219 118589237 TTGGTTTCAAGCAGGTTCC 59 118589258 118589279 ATTTCTGAAATGGCCAACAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000054530 ENSRNOT00000089976 3 1 1 60 4 118589219 118589237 TTGGTTTCAAGCAGGTTCC 59 118589260 118589279 ATTTCTGAAATGGCCAACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057161.1 ENSRNOG00000057380 ENSRNOT00000081416 1 1 1 80 7 58287351 58287372 GCCAAGCTAAGAATGAATACTG 58 58287409 58287435 CAAAGTGGACTCAGTATAGACAG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000051583 ENSRNOT00000086121 3 1 1 63 13 102768749 102768767 GCTGCAATATCTGTCACCC 59 102768704 102768722 CAAGGAAGAAAGCCAGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055133 ENSRNOT00000090864 2 1 1 60 1 254313714 254313733 ATGTACATCAGTAGGTGGCA 59 254313673 254313697 CATACATCAGAATAGACTGTAGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U12 ENSRNOG00000054820 ENSRNOT00000085854 1 1 1 60 3 10783691 10783712 GGGTAAAGGTTGCTATCTAAGG 58 10783731 10783751 GATCGCATTACTTAGGCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD22 ENSRNOG00000057313 ENSRNOT00000080796 3 1 1 97 3 164163731 164163750 ATAAGTCAGCCTGTCCTAGC 59 164163653 164163671 TCAGACAGTTCCTTCTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050005 ENSRNOT00000072876 3 1 1 60 5 57678074 57678092 ATGTGCCAAATCTCACCTG 58 57678115 57678134 ATTCCAAGTACTAACCGGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052031 ENSRNOT00000088832 1 1 1 60 5 2829047 2829065 GTTCGATTGTGTTGCTCTG 57 2829005 2829023 ATGGAAAGTGTCAGGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0713.5 ENSRNOG00000051245 ENSRNOT00000075848 3 1 1 60 X 70422390 70422410 CGTCCACTTTAAGATGCTTCC 59 70422350 70422369 TCCTGATGTCCCTTTAGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069968.1 ENSRNOG00000056807 ENSRNOT00000073515 1 1 1 64 8 43142318 43142342 CATGTCTTACCAGATTTACAGTTCC 60 43142276 43142294 CTGATGCACAGAACACAGC 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000054094 ENSRNOT00000077343 2 1 1 60 13 49302657 49302679 GGAACCATACAGAGAAGATTAGC 59 49302619 49302639 CTTTGCAAATTTCCGTGTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049353.1 ENSRNOG00000008953 ENSRNOT00000011847 3 1 1 61 5 118226339 118226357 ATTCCGCTCGTGATTTACC 58 118226295 118226313 GATGGTTCAGGCATTCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 SCARNA4 ENSRNOG00000055592 ENSRNOT00000085844 1 1 1 60 10 104714068 104714086 AAGAAGACGGCTGAGTCTG 59 104714026 104714045 CCCTTTGTCTAGGAGGAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA8 ENSRNOG00000053545 ENSRNOT00000082823 3 1 1 61 10 95583845 95583865 GACAGTGCGATAGAAATTCAC 58 95583888 95583906 GTTTAACATGCGCAAAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058287.1 ENSRNOG00000054367 ENSRNOT00000086715 3 1 1 62 7 108551330 108551469 TTCAAGAGGCTGTCCAGTC 59 108551286 108551304 TTCAACAGACCCTGACCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002683.1 ENSRNOG00000054609 ENSRNOT00000078462 2 1 1 84 1 80982566 80982589 GATCTGGGACACAGCAGAG 60 80982633 80982655 GATGTCATACACGAGTATGATGC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058689 ENSRNOT00000088633 1 1 1 60 3 4092863 4092882 AAGTGGCTATTTCTACGCTC 58 4092822 4092842 GGCTACAAACCATTCTTAGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059409 ENSRNOT00000082220 2 1 1 60 6 100876907 100876928 CTTTACAATGTGCATGAGTAGG 58 100876868 100876892 GTTTACTGAGCATAGACATAGACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058706.1 ENSRNOG00000054803 ENSRNOT00000080179 3 1 1 60 7 133979816 133979839 TGTATTGAGACTAGAGTCACATCC 60 133979858 133979876 ACGAGAACTCTAGCACACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054025 ENSRNOT00000082993 1 1 1 60 7 136948372 136948392 GGATAGCATGGAGATTAGCCT 59 136948332 136948351 GACACTTCACAGAATTGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000055551 ENSRNOT00000077812 3 1 1 60 19 34031306 34031325 ACCGTTACAGATTGAAGTCC 58 34031345 34031366 TCTAGTCAAGTGCAGTAGTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000057970 ENSRNOT00000079471 3 1 1 63 15 41941450 41941468 AAAGAGACCATTGTGGCAG 58 41941405 41941423 GGTTGCTATAGCACAGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052571 ENSRNOT00000087974 3 1 1 61 X 81921166 81921188 GAACGATACAGAGATTAGCATGG 59 81921209 81921227 AAACGCTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034350 ENSRNOT00000052473 3 1 1 60 7 128122508 128122529 GATCTTGTCTGATCTCAGAAGC 59 128122547 128122568 GTGCATCTTCTAAGTAATGACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000061641 ENSRNOT00000078641 1 1 1 60 15 101505233 101505251 GACTTTGGTGTGCAATGGT 59 101505271 101505293 GACAATAGGCTACATACACTACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000056434 ENSRNOT00000088952 2 1 1 60 13 60569737 60569758 TTGCATGTGGAAATACCTTCTC 59 60569777 60569797 AGCATGTTCTGGATACATTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000054785 ENSRNOT00000081929 3 1 1 60 1 241293021 241293039 CATGAAGCATGCTACCAGG 59 241293060 241293081 TCTAATCTAGTTGAGATGGCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053519 ENSRNOT00000078287 2 1 1 60 13 9637996 9638015 GGAACTTCCAAATAAGCACC 57 9637955 9637975 GAGTCATACACCATGAACCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061163 ENSRNOT00000089593 2 1 1 68 5 120096115 120096133 GATGAGGTTTAGCCATCGC 59 120096163 120096183 GTTGAGTTTCCTGAATTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051959 ENSRNOT00000085691 1 1 1 60 18 34224734 34224754 GACCATCTTCATTCAAGAGGA 58 34224774 34224794 TTGTTTAGAGGTTCTAGTGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000059686 ENSRNOT00000086923 1 1 1 73 5 165438645 165438663 TTGCTAATGACCTGCTGAG 58 165438590 165438608 AACAAGTTGCCACTTCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061780 ENSRNOT00000091633 2 1 1 60 18 35102722 35102741 CTCTTTGACCAATCCAGGAG 58 35102758 35102782 GAAGATCCTCTTTAGTAGAACAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060327 ENSRNOT00000083785 2 1 1 60 13 81388310 81388331 TCACATGTATGTCAGTAGTGGA 59 81388271 81388291 GTGAGAACACTGAGGGTAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060327 ENSRNOT00000083785 3 1 1 60 13 81388306 81388328 CATGTATGTCAGTAGTGGAAGAG 59 81388268 81388286 CAAGTGAGAACACTGAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061082 ENSRNOT00000084477 1 1 1 66 7 140904476 140904494 TTATCCATTGCACTCCGGA 59 140904524 140904542 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055682 ENSRNOT00000088809 2 1 1 60 15 12549296 12549315 CGATACAGAGAAGATCAGCA 57 12549338 12549356 GAATGCTTCACGATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000049201 ENSRNOT00000075520 3 1 1 60 13 34620809 34620827 AGCTATACCACCCTGAAGG 58 34620767 34620788 GACCTGCCTCAATTAACTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000043915 ENSRNOT00000069182 2 1 1 60 3 103957838 103957860 CAATCTCATCTGATCTTGGAAGC 60 103957800 103957820 CTGGCTCAGATTCAAATCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056039 ENSRNOT00000086198 1 1 1 60 5 63650680 63650698 GGAGGTTGTGTCACATGTG 59 63650721 63650740 TAACATGGGCATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061030 ENSRNOT00000088360 2 1 1 61 18 53669661 53669679 CTGCTGTGTAACAGGTGTG 59 53669618 53669636 ACTGAGCATAAGCAGAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051535 ENSRNOT00000086908 1 1 1 60 5 19832766 19832787 GTGTCACATGTGTATCTCTAGG 58 19832727 19832749 GAACACTTAGCATAGACATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051535 ENSRNOT00000086908 2 1 1 60 5 19832765 19832787 GTGTCACATGTGTATCTCTAGGT 60 19832727 19832749 GAACACTTAGCATAGACATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053326 ENSRNOT00000080469 2 1 1 63 10 65514771 65514789 GTGCTCCTTATAGTGGCAC 58 65514726 65514744 GTGTCCTCCTTAAGCAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059353 ENSRNOT00000089187 1 1 1 60 18 33982408 33982426 TTGCATGTAAGACTTGCCA 58 33982366 33982384 ATCCAGATCACCCAAACCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051602 ENSRNOT00000084654 1 1 1 60 6 108915267 108915288 CCCAATAGAATACTGAGGTGGA 59 108915228 108915248 CAGAACAAACTACTTGGACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051406 ENSRNOT00000089687 2 1 1 60 18 4314604 4314624 AGAGGAGGAACATTCTTCAGG 59 4314644 4314664 CGCAAGTTTGTTCTAGAAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059046 ENSRNOT00000091775 3 1 1 63 15 17051127 17051150 GGAACAATACAGAGATTAGCATGG 60 17051087 17051107 TGGAAGCTTCACGAATTTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017868.5 ENSRNOG00000057857 ENSRNOT00000078174 1 1 1 72 15 32012571 32012589 TACTCCTAGGCCTTCACCT 59 32012762 32012780 ATTTGTTTGACCTGCTGCT 58 Novel DesignNoJunction Rattus norvegicus 81 Y_RNA ENSRNOG00000058349 ENSRNOT00000084877 2 1 1 60 18 47569960 47569978 ACCTCGATTGACTGTCCAC 59 47569998 47570020 GAAGGGAGAAAGTGTAGAATTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060678.1 ENSRNOG00000049140 ENSRNOT00000071086 2 1 1 80 4 89252357 89252380 GAGATTTCACCTCACATGCG 59 89252422 89252441 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 SNORA5 ENSRNOG00000060046 ENSRNOT00000085028 1 1 1 64 10 43649717 43649735 CAAGTTCTGCTGCTCATGG 59 43649763 43649781 CTGCAGCCAAACTTATCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102556347 ENSRNOG00000049911 ENSRNOT00000085961 3 1 1 89 11 33813363 33846243 ATCGCCTTCAAAGTTGTTGAC 60 33846294 33846312 GCAGACATCTTGGGTACCA 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000054823 ENSRNOT00000079843 3 1 1 66 6 86491653 86491672 CAATGAGGTTTATCCGAGGC 59 86491700 86491719 AATAAGCCTCAGTATGCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056827 ENSRNOT00000086094 2 1 1 60 18 58972878 58972899 GAATATTAACATGGCCACAGTG 58 58972920 58972938 TAGGTTTCGAATGCTCCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054092 ENSRNOT00000084978 1 1 1 60 18 51319732 51319752 TGTGTTAGTAGGTGACAAGAG 57 51319773 51319792 TTCTGATGTTCACAGGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065693.3 ENSRNOG00000056285 ENSRNOT00000088974 2 1 1 84 6 139406418 139406437 CTGCAAATGGACAGTCTGAG 59 139406478 139406773 CTCCATAACAGTAACATTCACTCAC 60 Novel Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000056663 ENSRNOT00000079331 3 1 1 60 18 46914177 46914195 CCGTTAAGAACGCACTAGC 59 46914135 46914155 GTGTCCATGATCAATGTGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037270.1 ENSRNOG00000048303 ENSRNOT00000073882 1 1 1 60 X 17683643 17683665 AGAGAATATTCTTCCCTGGAGTG 60 17683605 17683624 AAAGATCCTCTGAGAGTGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051312.1 ENSRNOG00000059508 ENSRNOT00000092147 2 1 1 60 3 4773236 4773258 CAGTTTACCTGTCTATGAGATGG 59 4773273 4773296 GTTAATCCTGCCTAAGAGATAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051947.1 ENSRNOG00000039025 ENSRNOT00000059678 1 1 1 76 3 29861369 29861387 GACGTTGATCATTTGGGCA 59 29861311 29861332 CCCATCTCACAATTAATGTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051947.1 ENSRNOG00000039025 ENSRNOT00000059678 2 1 1 77 3 29861370 29861388 TGACGTTGATCATTTGGGC 59 29861311 29861332 CCCATCTCACAATTAATGTTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028237.1 ENSRNOG00000018685 ENSRNOT00000025224 2 1 1 60 17 61331260 61331281 TACAGTTGATAAATCTCAGCCC 58 61331221 61331241 GCTACACAATTTCACAAGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052989 ENSRNOT00000083014 1 1 1 60 18 27933515 27933533 GAGAAGATTAGCATGGCCC 58 27933473 27933491 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000056958 ENSRNOT00000083715 3 1 1 66 18 24631282 24631300 GGAAACAGCACTTCTGGTG 59 24631234 24631252 CTTGTCACAACACCGACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC120727.1 ENSRNOG00000009609 ENSRNOT00000012762 3 1 1 80 X 1615494 1615516 TACGATTATCAAGCAGAGGCA 59 1615434 1615452 GGATCAATGGTTGGCAAGC 60 Novel Rattus norvegicus 81 AABR07052071.1 ENSRNOG00000050109 ENSRNOT00000074833 1 1 1 63 3 35019894 35019914 TCAATTAGTGATCAAGGTGGG 58 35019939 35019957 AAGACTATCAGCCCAGGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 NRON ENSRNOG00000058888 ENSRNOT00000084664 3 1 1 60 3 12870643 12870665 GGATGACATATTCACAACACTGG 60 12870685 12870703 TAGCCTAATGATTCCGCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055927 ENSRNOT00000089507 2 1 1 60 18 78919934 78919955 GAGGTTATGTCTATGCTCAGTG 59 78919970 78919994 CGTTAGGCTACTAATTATTCAGGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054963.1 ENSRNOG00000061850 ENSRNOT00000077751 1 1 1 60 3 175779590 175779609 CCAAATCAGCTGTTGGATGG 60 175779630 175779650 GTGATCAATGCACAGCTACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059355 ENSRNOT00000079723 2 1 1 60 X 16254124 16254146 GGAACGATACAGAGAAGATTAGC 59 16254166 16254184 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909630 ENSRNOG00000049491 ENSRNOT00000079111 2 1 2 60 20 3952350 3952374 CTTACGATAAGCAGCTTATAACCTG 60 3952391 3952410 ACTAAGACAAAGAAGCTGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062791.1 ENSRNOG00000045939 ENSRNOT00000074611 1 1 1 107 6 8601111 8601133 CCTCTTCTGTACTGAATGATGTC 59 8601199 8601218 GAGGTAAAGAGTAGCTCCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062791.1 ENSRNOG00000045939 ENSRNOT00000074611 3 1 1 109 6 8601111 8601133 CCTCTTCTGTACTGAATGATGTC 59 8601201 8601220 AGGAGGTAAAGAGTAGCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045187 ENSRNOT00000070454 1 1 1 60 X 119875359 119875377 GCTAGTTCATACCACCCTG 57 119875317 119875338 GACTGTGGTTAATTTCCAAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055590 ENSRNOT00000084475 3 1 1 62 10 74738924 74738942 GGCTTATCCATTGCACTCC 59 74738968 74738986 TCAAGTTTCCCGCATTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060971.1 ENSRNOG00000054428 ENSRNOT00000077412 3 1 1 80 4 102068586 102068970 CTCTGGATCCAGGAAACCA 59 102069014 102069032 GACTGATTGTCCAATGGCA 58 Novel Rattus norvegicus 81 AABR07063638.1 ENSRNOG00000036511 ENSRNOT00000054618 1 1 1 60 6 38572551 38572569 CATGATCCAGCCATCTCTG 58 38572591 38572611 CTAGTCATGCTTGAGAGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD53_SNORD92 ENSRNOG00000054970 ENSRNOT00000091849 2 1 1 60 6 23449458 23449477 CTGTGATGATATCCACACGG 58 23449417 23449437 AAGAGAAAGGTGTCATCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015687.1 ENSRNOG00000060369 ENSRNOT00000082217 3 1 1 109 14 70478895 70478915 CTACAGATTCAATGCAATCCC 57 70478804 70478823 TAGCTTTAGCTATCCTGGGT 58 Novel DesignNoJunction Rattus norvegicus 81 ENSRNOG00000061185 ENSRNOT00000089055 3 1 1 77 17 43776282 43776300 GCTATCAGAAGTCCACCGA 59 43776223 43776241 TGAAGTCCTGAGCGATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065656.10 ENSRNOG00000059953 ENSRNOT00000087855 2 1 1 102 6 138908968 138909071 CATTTCCAAGCTGTGTCCTG 60 138908885 138908903 AATCCAGAGACAGTGCAGG 59 Novel Rattus norvegicus 81 AABR07027811.6 ENSRNOG00000058444 ENSRNOT00000085381 1 1 1 85 17 44744806 44744824 ATCCAGGGCATCACTAAGC 60 44744739 44744757 GTCTCCTCGTAGATGAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059855 ENSRNOT00000081293 2 1 1 60 15 91271278 91271299 TACAGAGAAGATTAGTCATGGC 58 91271319 91271338 GGAACATGTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059527.1 ENSRNOG00000060833 ENSRNOT00000082968 3 1 1 124 4 22986945 22986965 TTTGACTCTGTTACAGAGGGA 59 22987053 22987075 GGTATTTAGGCACTGAAACCTC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052698 ENSRNOT00000091422 2 1 1 60 20 867054 867075 GAGGGTATGTCTACACTTAGTG 58 867015 867036 TGCAAGGCTACTAATTACTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070131.2 ENSRNOG00000053732 ENSRNOT00000090843 3 1 1 65 8 53903710 53903734 CAGGATCTATCTATGGACAAGAG 58 53903759 53903777 CCGTTAAGCTGGGAATTCC 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000061598 ENSRNOT00000091102 3 1 1 60 20 11618304 11618324 ACGATACAGAGATTTGCATGG 59 11618345 11618364 GGAACGCTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056626 ENSRNOT00000077937 2 1 1 60 20 45224675 45224693 GTGTCAGTAGGTGGCAGAG 60 45224715 45224735 TTCCTAGGTCAGAATGCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000053398 ENSRNOT00000080117 1 1 1 60 6 25261047 25261067 GGTGTTGTTCTTGTATCATCC 57 25261088 25261107 TAGGATGAACAAAGGACTGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057594 ENSRNOT00000091250 3 1 1 60 20 8995505 8995524 CAGCACATACACAGGAACTG 59 8995547 8995565 CATGTCGTCTTTGTGCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097791.1 ENSRNOG00000052708 ENSRNOT00000090145 2 1 1 68 7 143224894 143224912 CTCATACTGGGCCTTGACC 60 143224944 143224962 CTCTCCATGGACAACAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071500.1 ENSRNOG00000042061 ENSRNOT00000065507 2 1 1 86 8 118618767 118618785 CTTGCCTAAAGAGCAGAGG 58 118618695 118618717 GCACAGTCTATAGGAGCTG 57 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000051751 ENSRNOT00000082068 3 1 1 60 11 85393950 85393968 ACATTGCAGCTGCTATGAC 59 85393908 85393929 TAGACACTGTTTCTCCTGTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000053858 ENSRNOT00000091478 3 1 1 60 20 29693433 29693451 TGGCAGATGTATCCCTCAC 59 29693391 29693411 TACTGAACAAAGTGAGTGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005779.2 ENSRNOG00000054418 ENSRNOT00000089740 3 1 1 60 1 198801440 198801458 ATCTACGAGATGGCTGCTG 59 198801485 198801505 AAATCTGAATTGGCTGGTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AC117869.1 ENSRNOG00000031439 ENSRNOT00000041965 3 1 1 60 19 44267920 44267938 TGTGGCCCAAATTTATGCT 58 44267961 44267980 TTGGTAATAAGCCACCAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000057324 ENSRNOT00000080645 3 1 1 61 11 48816376 48816394 GTTCATGGGCTTTCAGGTG 59 48816333 48816351 GAAAGCTCATGGCATCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC104053.2 ENSRNOG00000059424 ENSRNOT00000091921 1 1 1 60 18 53089866 53089885 TCAGCACACTCTACAGTCAC 60 53089907 53089926 ATAGGGTTAGCACAAACGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057820 ENSRNOT00000081557 1 1 1 74 19 27449899 27449920 CGCTTCAGAAGTACATATACGA 58 27449846 27449864 ATTTGCTGCTCATCCTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031972.1 ENSRNOG00000046899 ENSRNOT00000072730 2 1 1 60 18 41434276 41434296 TATTCATTGTGGCCCTAGGAG 59 41434236 41434254 TTTCTTGGTTCAACCACGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033045.1 ENSRNOG00000000713 ENSRNOT00000000903 2 1 1 60 11 2786077 2786097 GCTGACGATAGTTGATACTCC 58 2786037 2786058 CTGCCAGCAATTACTATTATCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000056025 ENSRNOT00000079278 3 1 1 67 11 65146704 65146722 TCACATGTGCGTCAGTAGG 60 65146655 65146674 TCACAGGTCAGAACACTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033056.1 ENSRNOG00000057596 ENSRNOT00000083815 2 1 1 60 11 3039609 3039629 GACTCATCATCCTTGTTTCCT 58 3039569 3039589 TGTTGGTCTGGATAGCTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059498 ENSRNOT00000081068 3 1 1 62 7 2667253 2667275 CAATACAGAGAAGATGAGCATGG 59 2667295 2667315 GGAACGTGTCATGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067198.1 ENSRNOG00000049084 ENSRNOT00000072234 2 1 1 60 9 34552837 34552856 CTCCAAACGAATCAGCTACC 59 34552796 34552814 TCCTCAGAGACCAGATTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA8 ENSRNOG00000057112 ENSRNOT00000084213 3 1 1 64 11 68161328 68161348 TCCAATTGTCACTAGATCTCC 57 68161284 68161302 TTTCACTCAATTCGCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061325 ENSRNOT00000091256 3 1 1 60 19 43611888 43611907 TCGTATTTCCGTCAGTAGGT 58 43611929 43611948 TCAGAACACTGAGCAGAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060372 ENSRNOT00000080642 3 1 1 60 11 421111 421130 TAGCCAATGAGGTTTATCCG 58 421070 421088 ACAATGAAACCCAAAGCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052131 ENSRNOT00000091169 3 1 1 60 4 150159681 150159700 AGGGCTATGTCTATGCTCAG 59 150159640 150159660 TGTTAGGCTACTACTCATTCG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053345 ENSRNOT00000083506 1 1 1 60 7 36699317 36699336 ACAGAAGACGAAGACATCCC 60 36699354 36699377 CTCACATATCCTTAATGAAGGACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055294 ENSRNOT00000084194 1 1 1 60 10 46463380 46463400 CTGTACTCCAGATATGTTGCC 58 46463340 46463358 ATCCTGCAGTCTCGTTTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD67 ENSRNOG00000052617 ENSRNOT00000086512 1 1 1 60 3 80506704 80506725 ATAGTATCAGGTGATACAGGCA 58 80506746 80506764 CCTGTGCACTTGGTTTGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057193 ENSRNOT00000088074 1 1 1 60 18 2103557 2103577 GATAGATGAAGACAGACAGCC 58 2103596 2103617 GCTACTCATACCCTTAATTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056169 ENSRNOT00000078553 2 1 1 60 11 86786601 86786620 ATACTTATCTGGCGGAGGAG 59 86786560 86786578 CCTTACCCTTGGGAAAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045356 ENSRNOT00000070623 3 1 1 60 11 64849027 64849045 ATTCCACACGAAATGTGCC 59 64849066 64849087 GTACTAACCAGAATGCTTAGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07046669.1 ENSRNOG00000051429 ENSRNOT00000082787 2 1 1 70 5 1507144 1507162 GATGGAAGTCAACAGCTGC 59 1507197 1507215 CAGTCTTCTCAACCCAGCT 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000056317 ENSRNOT00000080261 2 1 1 60 18 87575765 87575784 CACATGTGCATCAGAAAGTG 58 87575805 87575825 ATCACAACACTGAGTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058878 ENSRNOT00000087545 3 1 1 60 11 82036659 82036678 CAGAACCTCCAAACAAGCTC 59 82036618 82036636 CAGATGACTGGAGGTTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055273 ENSRNOT00000083391 2 1 1 78 7 49260804 49260822 TTTAGAGGCATTGCAGGTG 58 49260864 49260882 AACATAGGCGTAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044703 ENSRNOT00000069970 3 1 1 60 18 27871033 27871055 CTGATCTCGGAAGAATAGAAACC 59 27871074 27871093 CCATAGACTTCCACAAGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051990 ENSRNOT00000084772 1 1 1 62 4 150515712 150515730 ATGAGGTTTATCCGAGGCG 60 150515668 150515686 CCATAGACTGTGGCATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058838 ENSRNOT00000090189 2 1 1 60 11 88403712 88403733 CAGGCTATGTCTACATTCAAGC 59 88403750 88403772 GTTAGGCTACTAAGCATTCAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008298.1 ENSRNOG00000054825 ENSRNOT00000077415 3 1 1 60 2 52618950 52618969 TCAACCACTTCATTTCAGCA 58 52618909 52618928 TTGAACAATCCAGCCATCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043347.1 ENSRNOG00000051410 ENSRNOT00000074702 2 1 1 60 19 27603653 27603671 AACACATGGAAACAACCCT 58 27603693 27603713 GTATCTACAGCTCCTTGTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065115.1 ENSRNOG00000048218 ENSRNOT00000075152 3 1 1 70 6 110511751 110511769 TGAGATCCAGCTGTAAGGC 59 110511803 110511821 ATGGTACCACCCACAATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058124.3 ENSRNOG00000055178 ENSRNOT00000077137 1 1 1 60 7 101138591 101138610 AGGATTCAATTAAGGTGCCA 57 101138550 101138568 TAAGAGTCCACAACAGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068636.1 ENSRNOG00000047678 ENSRNOT00000054647 1 1 1 69 9 113746690 113746708 AGGGCTACAATAGGTGTGC 60 113746741 113746759 TCATGCTTGAGAGTGAGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051548.2 ENSRNOG00000057376 ENSRNOT00000077741 3 1 1 92 3 16753740 16753965 TCTGGGTATATGGTACCTGTG 59 16754016 16754037 TGCAGTTTATAGTGACCATCTC 58 Novel Rattus norvegicus 81 AABR07042385.1 ENSRNOG00000047872 ENSRNOT00000070905 3 1 1 78 X 154585151 154585170 ATCCCTGAAAGAATTCCAGG 57 154585211 154585231 CCTGTGTTCTTTCTTGATTGC 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000056253 ENSRNOT00000091771 3 1 1 70 5 164164228 164164247 GCTCCAGTAGCACATATCCT 59 164164280 164164298 GTTATCCTTGTGCAGAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047194.2 ENSRNOG00000060784 ENSRNOT00000086280 2 1 1 63 5 23358401 23358422 GATGGACTAGAAATCCATTGGG 59 23358446 23358464 CTCTTACCGTAGTCGGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059423 ENSRNOT00000082214 2 1 1 60 7 110500104 110500124 TGGCTACTATGTCACTTTCTC 57 110500064 110500083 AGCATTCACATTGCCTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051525 ENSRNOT00000090158 3 1 1 60 7 37366399 37366419 TCACAGAAGACGAAGACATCC 60 37366437 37366459 CACATATCCTTAATGAAGGACGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA27 ENSRNOG00000057459 ENSRNOT00000082764 3 1 1 61 6 80224798 80224816 AGGGTAAAGGAACTCTCCA 57 80224841 80224859 CAGGATCCAAAGAGGAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072668.1 ENSRNOG00000033345 ENSRNOT00000091620 1 1 1 60 19 59991312 59991330 CACTGACAGAAGGAAGCAC 59 59991270 59991288 GATCCACATGAACTGAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069944.1 ENSRNOG00000058997 ENSRNOT00000077101 1 1 1 60 8 42839608 42839629 CTTCTGTTCCTGAGCATCG 58 42839566 42839584 AGATGAGCAGGATCATGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07069944.1 ENSRNOG00000058997 ENSRNOT00000077101 3 1 1 61 8 42839608 42839629 CTTCTGTTCCTGAGCATCG 58 42839565 42839583 GAGATGAGCAGGATCATGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07029863.3 ENSRNOG00000058245 ENSRNOT00000077451 1 1 1 91 10 56530633 56530651 GGCATATGTTAGTGCTCCC 58 56529665 56530578 CGATTCCAAATCTGGCTGG 59 Novel Rattus norvegicus 81 SNORD113 ENSRNOG00000051396 ENSRNOT00000081382 1 1 1 64 6 133759961 133759979 CAATGATGAGGAGCATGGG 58 133760005 133760025 GTCCTCAGATTTCATAAGGGT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027128.1 ENSRNOG00000061064 ENSRNOT00000079489 3 1 2 81 17 14943492 14943513 AATGTACGAAGAAAGGAACAGG 59 14942044 14943450 TCCTGGGTATGCTTATGCT 58 Novel Rattus norvegicus 81 AC096473.2 ENSRNOG00000053543 ENSRNOT00000084369 3 1 1 78 7 120138234 120138255 GGCTATTAAATCAGGAAGGAGG 58 120138175 120138196 TCCTGGAGATACAGAATCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AC135901.1 ENSRNOG00000054640 ENSRNOT00000086148 3 1 1 92 5 154103514 154103532 ATAGAAGCCATTTGGGCAG 58 154103588 154103608 CATACGATGTGTCTGGTGG 58 Novel Rattus norvegicus 81 SCARNA11 ENSRNOG00000054983 ENSRNOT00000081653 3 1 1 60 4 157637078 157637097 GTCTTAACAGGGTAGTCTGG 57 157637120 157637138 ACAGCCCTCCTAAACTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000058009 ENSRNOT00000091706 3 1 1 60 11 47049267 47049287 TCCTTTCCTCATAGGAGTCTG 58 47049308 47049327 TACACTACCAAGGAGGATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056755 ENSRNOT00000078225 2 1 1 60 17 79036237 79036257 CTAGAACCTCCAAACAAGCTC 59 79036278 79036297 CATTATCACCCGTGTACCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064716.1 ENSRNOG00000028058 ENSRNOT00000034507 2 1 1 60 6 91581080 91581103 AGTATCTCTGGTATTGAAGAGGTG 60 91581043 91581062 TAAAGTGGGTCACTGTTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058466 ENSRNOT00000090935 2 1 1 61 11 52753792 52753810 AGAGAAGACTAGCATGGCC 59 52753835 52753853 TTAATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058239 ENSRNOT00000090829 3 1 1 61 11 10274900 10274918 CTATCCTTAGAGGCACTGC 57 10274857 10274877 CTCTCAGTCACCTAATGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059998 ENSRNOT00000077330 2 1 1 80 4 145111179 145111200 GCACATCTACTAAACTTGAAGC 58 145111239 145111259 GGAATGCTTCACAAATCTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043725.1 ENSRNOG00000055568 ENSRNOT00000086623 2 1 1 60 19 36390574 36390598 GGATGATGAAGAAGAGAATAAGCTG 60 36390616 36390634 CACAGCAAGAGGTAAACGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033318.1 ENSRNOG00000059691 ENSRNOT00000080073 3 1 1 80 11 17281763 17281786 AGATTTCACCTCACATGCGA 60 17281702 17281722 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 AABR07073073.1 ENSRNOG00000050747 ENSRNOT00000075780 1 1 1 60 4 157710090 157710109 AATCCTAACAGTGGGAGCAG 60 157710132 157710150 TACAGGGTCCTAAAGGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055528 ENSRNOT00000085160 1 1 1 64 4 103047065 103047084 TCAGTGCTGTATCACATGTG 58 103047020 103047038 ATACTGGGCAGACACAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA72 ENSRNOG00000054019 ENSRNOT00000082527 1 1 1 60 7 73213935 73213955 GCGAATATTCTCGCTGTTCTG 60 73213895 73213916 ACTATAGCGAATGTTTAGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA72 ENSRNOG00000054019 ENSRNOT00000082527 3 1 1 60 7 73213900 73213918 GACAGGCTAAACATTCGCT 58 73213858 73213877 GGTAAAGAACTAGGTCTGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057015 ENSRNOT00000080726 2 1 1 60 9 56137096 56137119 GAATTAGACCTTCCCTGAATAGAG 58 56137059 56137082 GAGATACTCATATACCCTTGACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059499 ENSRNOT00000081274 3 1 1 63 17 88628607 88628626 TGTGTCAGTATGTGGCAGAG 60 88628563 88628583 TGTTCATAGGTCAGAACTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU85 ENSRNOG00000060559 ENSRNOT00000084000 3 1 1 60 4 157700868 157700886 TTGGTTTGGCTAAGTCCAG 58 157700826 157700846 TATCGACCACCAAGATTACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058301.1 ENSRNOG00000031680 ENSRNOT00000051728 3 1 1 60 7 109411688 109411707 GTACGAGAAATGGCTCAGGA 60 109411730 109411748 CACCAATAGCTGCACTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056776 ENSRNOT00000077641 2 1 1 62 7 53840712 53840730 CACTTTGACAGCACATGTG 58 53840668 53840686 ATTCTTCGTACAAGGGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067042.3 ENSRNOG00000052878 ENSRNOT00000077690 2 1 1 84 9 27556403 27556422 GATCAAAGCACTGGTTGGTG 60 27556469 27556764 TCCAACATCTCTTGGCCTC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000043952 ENSRNOT00000069219 2 1 1 60 9 50874810 50874830 AAGCCCAGGATCATTAATCTG 58 50874770 50874791 CCAATGCAAGTATTAAACAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057900 ENSRNOT00000081093 2 1 1 60 7 93868665 93868684 ACGAGGCAGGAAATATACCA 59 93868704 93868725 AGTGTAATGGGTAAGACACCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000053959 ENSRNOT00000087145 3 1 1 61 10 74757920 74757944 TACTAGAGAAGTTTCTCTGACTGTG 60 74757963 74757981 GACGCTATGTCTCGTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000733.1 ENSRNOG00000058047 ENSRNOT00000077927 1 1 1 80 1 24855730 24855752 CAACTTAGAGATGGAGAACACTG 59 24855043 24855691 AGCAGGTTTCTAGAGAAGGT 58 Novel Rattus norvegicus 81 ENSRNOG00000048017 ENSRNOT00000036375 2 1 1 80 7 18793032 18793249 GGATTTCAGACTCCAAAGGG 58 18792971 18792991 GACTGATTCTTTCTCCTGGAG 58 Novel Rattus norvegicus 81 Krt40 ENSRNOG00000013896 ENSRNOT00000018804 1 1 1 80 10 87457832 87457852 GCAGAGAATTCTAGACTTGCC 59 87457466 87457792 TTCGCTCTCATACTTTGACCT 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054913 ENSRNOT00000084519 1 1 1 60 4 93769417 93769436 TTGCAGGTATGTCAGTAGGA 58 93769376 93769394 TCAGTGAGCTGAGCATCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033579.1 ENSRNOG00000058863 ENSRNOT00000081347 3 1 1 108 11 28810815 28810833 CTGGATTCGAATCACGCTC 59 28810549 28810745 CTTCAACCTCCACTCTTTCAG 59 Novel Rattus norvegicus 81 Rn60_20_0464.2 ENSRNOG00000051272 ENSRNOT00000076600 1 1 3 115 20 44608169 44608187 TGGAGGAAGGTGTTCAGAG 59 44602980 44602998 CTGTCAGGACCTGGAACTG 60 Novel DesignNoJunction Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000056796 ENSRNOT00000077258 3 1 1 60 7 99482910 99482928 GATGAAGAACGCAGCTAGC 59 99482951 99482970 GTCCATGATCAATGTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012795.1 ENSRNOG00000017695 ENSRNOT00000023972 2 1 1 206 2 208738761 208738785 GAGTATTTCTCTAAGCAGAAGTGAG 59 208738946 208739003 AGAATTAACAGGCTGGTTTCTG 59 Novel DesignNoJunction, InUTR Rattus norvegicus 81 U6 ENSRNOG00000055444 ENSRNOT00000081230 3 1 1 60 10 34184395 34184415 AGAAGATTAGCATTGTCCCTG 58 34184355 34184373 AAATATGGACCGCTTCACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066818.1 ENSRNOG00000049643 ENSRNOT00000074015 1 1 1 65 9 17175048 17175066 TTTCTCTGTGTAGCCCTGG 59 17175001 17175019 CTCTGAGTTCAAAGCCAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000048227 ENSRNOT00000074722 1 1 1 60 12 25290828 25290846 TACCATACTGGACATGCCT 58 25290869 25290888 CTCCCATCCAAGTACTAACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000048227 ENSRNOT00000074722 3 1 1 60 12 25290827 25290846 ATACCATACTGGACATGCCT 58 25290868 25290887 TCCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102554192 ENSRNOG00000056102 ENSRNOT00000081255 1 1 1 60 10 87913510 87913534 CCTTAGAAATACTATCCATTTGCCC 60 87913474 87913492 TGTAACCAATTGCCACGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000055698 ENSRNOT00000088463 3 1 1 60 4 119866369 119866387 TTGGTGGTGCTACAGAAGG 60 119866327 119866347 GTTCTATAGCAGACACAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000050347 ENSRNOT00000073923 2 1 1 80 10 89335746 89337720 CAAGAAGGATATAAAGCCCGTG 59 89335687 89335705 AGCTCCATCTCGTCATCTC 59 Novel Rattus norvegicus 81 AABR07020537.1 ENSRNOG00000059133 ENSRNOT00000090623 3 1 1 80 13 29844764 29844787 AGATTTCACCTCACATGCGA 60 29844828 29844848 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 AABR07012763.1 ENSRNOG00000057707 ENSRNOT00000086252 2 1 1 89 2 206842702 206842720 CCTTGTTCCTTATGGCTGC 59 206828479 206842649 AACCCTGTAAGCATGGGTC 60 Novel Rattus norvegicus 81 AABR07025787.1 ENSRNOG00000059962 ENSRNOT00000089505 1 1 1 88 16 50502267 50502285 CTTCTGCAGCTGAAACTCG 59 50502338 50502356 AGTAAGCTTGCAGTGACTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07012301.1 ENSRNOG00000055916 ENSRNOT00000081253 3 1 1 62 2 192463403 192463422 ATACCAACAGAAATGCCCTC 58 192463447 192463465 TTTGGTGGACACTTCTGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010306.1 ENSRNOG00000052009 ENSRNOT00000078570 2 1 1 82 2 131957232 131957253 GGTCAGTGCCATTTATAAGCTG 60 131957170 131957189 CAAATGCGTGAAGCAGGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07021691.2 ENSRNOG00000059709 ENSRNOT00000072984 3 1 1 115 13 85624868 85624886 AAAGAGGCAACTTGAGCTG 58 85624967 85624985 CACTATGTCTTTGTGGCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07043776.1 ENSRNOG00000061454 ENSRNOT00000078388 2 1 1 60 19 39670650 39670670 ACTCATTGACTTACACAGTCC 58 39670610 39670633 CTCAATACTGTTGGAAGTAATCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002250.2 ENSRNOG00000059513 ENSRNOT00000083609 3 1 1 80 1 69876856 69876876 TTGATGATTCTCAGAGACTCC 57 69876917 69877351 CAGGTATGAGTCCCAATGAG 58 Novel Rattus norvegicus 81 AABR07014301.2 ENSRNOG00000050982 ENSRNOT00000074231 2 1 1 65 14 8149932 8149951 AGAGAATTGCCAGAGAAGGA 59 8149885 8149903 TTTCAGGATTGAGGTGGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054716.2 ENSRNOG00000053380 ENSRNOT00000086910 1 1 1 80 3 167442586 167442607 CTGAATCCTTCTCAGAAGAGTC 58 167442645 167442869 CCAAATGTAGCCTATAGCACTG 59 Novel Rattus norvegicus 81 Rn60_10_0890.4 ENSRNOG00000051098 ENSRNOT00000075835 1 1 1 81 10 89168721 89168739 GAGGAAAGGGATGAGGCAG 60 89168223 89168678 CTCTGGAAATACCTTCTCCGA 59 Novel Rattus norvegicus 81 AABR07054247.1 ENSRNOG00000053547 ENSRNOT00000090559 2 1 1 79 3 145392899 145392918 TTAGTTCTCGGAAAGCTCCC 60 145392964 145392982 ATGGTATCCAACAGCTCCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07001435.1 ENSRNOG00000004144 ENSRNOT00000058849 2 1 1 85 1 43933722 43933745 AAAGTCGGTAGAGGTGAAGC 60 43933656 43933676 CTATTTCCTTTCCAGTGCTGG 59 Novel Rattus norvegicus 81 Spn ENSRNOG00000036711 ENSRNOT00000055013 3 1 1 125 1 198576786 198577166 TTAAGCTGGTCCCAACTCC 59 198576679 198576697 CATCGTCATCGTATTCGGC 59 Novel InUTR Rattus norvegicus 81 AABR07042326.3 ENSRNOG00000060421 ENSRNOT00000085101 1 1 1 60 X 152889444 152889464 ATGGTGGATCTTACTCAACCC 60 152889486 152889504 CAATGGGCTTCCATTGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044601 ENSRNOT00000069868 3 1 1 61 8 111941328 111941346 CCTGAATGTGCCTGATCTC 58 111941285 111941304 CTCCCATCCAAGTCCTAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070238.2 ENSRNOG00000048192 ENSRNOT00000074538 1 1 1 88 8 60701335 60701353 CGGTCGAGATCAAGAAAGG 58 60701407 60701429 CTTGTTAAACCGTTCACCG 57 Novel Rattus norvegicus 81 7SK ENSRNOG00000058817 ENSRNOT00000090144 2 1 1 60 8 115337968 115337989 GAAGAAGATAGCTTTCCTCCAC 59 115338005 115338028 GTGGATGTTTATAGACTCTTGACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007905.1 ENSRNOG00000053229 ENSRNOT00000079385 3 1 1 61 2 34452824 34452844 ACTGAACTGAGAATAGGACCC 59 34444924 34444944 ATTCTTCTACATGTTGCCCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AC091229.1 ENSRNOG00000059485 ENSRNOT00000079411 2 1 1 80 10 37482544 37482563 ACCTATCAACCTGACAAGCA 59 37482605 37484567 TCAGTTAACCGTGAATTGGG 58 Novel Rattus norvegicus 81 AC108312.1 ENSRNOG00000053031 ENSRNOT00000078283 3 1 1 80 14 80550936 80550956 CCCACCGTAATAATCTGCT 57 80551001 80551020 CGTGATATAGCATTCTGCCT 58 Novel Rattus norvegicus 81 SNORA55 ENSRNOG00000060932 ENSRNOT00000083013 3 1 1 60 8 13778718 13778736 GAGCAGAGGAAATCCAGAC 58 13778759 13778778 CGGAGTTATAGAGACAGGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000052812 ENSRNOT00000078659 1 1 1 60 8 48825745 48825766 TTTGAAAGATACAGAGTGTCCC 58 48825784 48825805 GGTTAAGTGCTACTCAAGTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060943 ENSRNOT00000079220 1 1 1 60 8 99954084 99954102 CTTAGGAGCACTGCAAGTG 59 99954042 99954060 CCCTCACTGCCATCTACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008319.1 ENSRNOG00000056627 ENSRNOT00000080851 2 1 1 85 2 52855839 52871470 GTCCAATGGGTTGAGAGCT 60 52871519 52871537 CTCTGGAAGACCTCAGTGC 60 Novel Rattus norvegicus 81 AABR07071819.1 ENSRNOG00000041639 ENSRNOT00000063392 1 1 1 60 8 132768304 132768327 AGGACATTAGAAGAAGGAAGACTC 60 132768346 132768364 TTACTCAGTCCCACAAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041865 ENSRNOT00000063618 2 1 1 60 8 122345812 122345834 CCAATCTCATCTGATTTCAGGAC 59 122345853 122345872 TTCCTGTTCAAGTACTAGCG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057413 ENSRNOT00000089787 2 1 1 60 8 49084540 49084561 ATAACGCAGAGATTAACACAGC 59 49084501 49084521 ACAGAATGCTTCATGACTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024722.1 ENSRNOG00000056897 ENSRNOT00000080161 2 1 1 80 16 12662096 12662115 ATGGCCATTTACTCAAAGGG 58 12661910 12662054 GAAACCTTCTCATCCAGGTC 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000060214 ENSRNOT00000090465 3 1 1 60 3 111075491 111075515 CTGCATATACTATCACTGGAAAGAC 59 111075530 111075551 TATGTCATTCTTTCACAGGGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051794 ENSRNOT00000091997 2 1 1 60 3 160272667 160272687 CGTCAGTAAGTGACAGAAGAG 58 160272708 160272727 ATGTTCATAGAGCAGAACCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA55 ENSRNOG00000060569 ENSRNOT00000077267 2 1 1 60 3 72885458 72885476 GAGCAGAGGAAATCCAGAC 58 72885416 72885434 CAGAGTTGTAGAGACAGGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026424.1 ENSRNOG00000038106 ENSRNOT00000019033 1 1 1 60 16 75874371 75874393 GTGATTATAGAGCGATACAAGGG 59 75874333 75874351 GGAACTTGGTCTTGTCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059174 ENSRNOT00000084125 3 1 1 60 3 140565414 140565435 ATACAGAGAAGATTAGCATGGG 58 140565455 140565474 GGGACGTTTCATGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061411 ENSRNOT00000082625 3 1 1 60 3 109824035 109824053 CTCTCAGGATGAGCTGACC 59 109823993 109824012 AAATTATGCAGTCACGTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061634 ENSRNOT00000079099 1 1 1 60 16 76183759 76183778 TGGGTCAGTAGGTAACAGAG 58 76183799 76183819 TTCACAGATCAGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014875.1 ENSRNOG00000058665 ENSRNOT00000088185 2 1 1 80 14 34905939 34906493 CATGTTCCAAAGGTCGTGAC 60 34906532 34906554 GGGATAATTAATCGTCTGGAGGT 60 Novel Rattus norvegicus 81 AC114452.1 ENSRNOG00000054395 ENSRNOT00000080427 1 1 2 80 14 36590954 36590973 TACCAATGCCCATATTGTCC 58 36590452 36590913 CAGATTCTTGACCCAGTAGAG 58 Novel Rattus norvegicus 81 AABR07014897.1 ENSRNOG00000052390 ENSRNOT00000091721 3 1 1 81 14 36889986 36890202 GAAGGTCAGGAAGATACTTATCCT 59 36889928 36889950 CTGACATTTCTACTCAGAGAAGC 59 Novel Rattus norvegicus 81 AABR07031393.1 ENSRNOG00000052995 ENSRNOT00000082044 3 1 1 81 18 12140976 12141513 GTACAGCTGCACTTCTTCC 59 12141557 12141576 TGAACTTTGGATCATGCCAC 59 Novel Rattus norvegicus 81 AABR07015007.1 ENSRNOG00000054706 ENSRNOT00000083612 1 1 1 68 14 44872774 44876788 ATCACCTCCCATAATCGCC 59 44872724 44872745 GTGGGATATAATTTACTCCGGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062775.1 ENSRNOG00000054672 ENSRNOT00000084160 2 1 1 107 6 7395656 7416110 CTTCTCTTTGGGCTTGGGA 60 7395567 7395586 GATTCTTGCTCCAGCTTCTC 59 Novel Rattus norvegicus 81 AC111831.1 ENSRNOG00000054592 ENSRNOT00000077392 3 1 1 80 6 8176334 8201778 TCTTAGTCGTCAAGTATGTGCT 59 8176275 8176297 GTCAGGGAAACAAAGGTAAAGAG 60 Novel Rattus norvegicus 81 AABR07015517.3 ENSRNOG00000061322 ENSRNOT00000091758 3 1 1 80 14 61101631 61111918 GACATTTGAGGTGGTTGGTG 60 61111958 61111979 AATCTCTTCTTTCACCCAAAGG 59 Novel Rattus norvegicus 81 AABR07047174.2 ENSRNOG00000057656 ENSRNOT00000090094 1 1 1 83 5 22204373 22205541 GGAACCCAGATTGAACTGTG 59 22205586 22205605 ATATTGGTTGCGCAAATTGG 58 Novel Rattus norvegicus 81 AABR07015517.2 ENSRNOG00000058688 ENSRNOT00000078204 2 1 1 61 14 61116719 61116738 TAAGCCTGCCAAATCCTAGG 60 61122446 61122464 ATTAGGCCTTCTCCACGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07047237.1 ENSRNOG00000060450 ENSRNOT00000085206 2 1 1 60 5 24974448 24974467 ACAGGCTATGAACTTTGTGC 59 24970312 24974429 GACCTTTCCTGATGAATGAAAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07015648.1 ENSRNOG00000057570 ENSRNOT00000081907 1 1 1 95 14 68704181 68704199 GAATGAAATGGAGGGCGTG 59 68699040 68704122 ATCTGAAAGCAGCTTGGGT 60 Novel Rattus norvegicus 81 AABR07015652.1 ENSRNOG00000054995 ENSRNOT00000084963 1 1 1 74 14 68796351 68796372 CCTGTGAAACAATCTTAGGGAG 59 68790468 68790486 GTCCTCTGCACGATTACGT 60 Novel DesignNoJunction Rattus norvegicus 81 LOC102550206 ENSRNOG00000058088 ENSRNOT00000088269 3 1 1 83 1 14508054 14508072 CTGTAGTAGGCTTGTGGCA 59 14508118 14508427 GTGCCACTGATTATGTCTGG 59 Novel Rattus norvegicus 81 AABR07015917.1 ENSRNOG00000052037 ENSRNOT00000083054 1 1 1 80 14 86100200 86100219 ATGGATGCTAGGGTTGACTG 60 86100258 86100578 GAGAGTACATCTCAGTGTATGCA 60 Novel Rattus norvegicus 81 AABR07015942.1 ENSRNOG00000057726 ENSRNOT00000078849 2 1 1 87 14 87140446 87140464 GTGATTCCAACGTGGTCAG 59 87141745 87141763 CTCATGAGAGCTGTTGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07073038.2 ENSRNOG00000059100 ENSRNOT00000090348 1 1 1 80 4 118329828 118330537 CAATACGCTGGAGACAGAG 58 118330579 118330599 AGATACAGATTCCATCCTGTG 57 Novel Rattus norvegicus 81 AABR07030473.1 ENSRNOG00000052682 ENSRNOT00000091161,ENSRNOT00000089145 2 2 2 118 10 88568178 88568196 GCAACATCCAGCTGAACTC 59 88567743 88568096 TATGGAATACCCTGGCCCT 60 Novel Rattus norvegicus 81 AABR07061390.1 ENSRNOG00000054278 ENSRNOT00000089766 1 1 1 73 4 121179477 121179495 GATCTTCCCAGTGTCCAGG 60 121182797 121182815 TTATCCTGTGGCACAGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07061390.1 ENSRNOG00000054278 ENSRNOT00000089766 3 1 1 74 4 121179476 121179494 AGATCTTCCCAGTGTCCAG 58 121182797 121182815 TTATCCTGTGGCACAGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030566.2 ENSRNOG00000053962 ENSRNOT00000081928 1 1 1 80 10 93181114 93181133 TTCTAAGCAACATGGGAGTC 58 93181176 93182201 TATTGTCAGCACTGATGGG 57 Novel Rattus norvegicus 81 AABR07000714.2 ENSRNOG00000057722 ENSRNOT00000085871 1 1 1 83 1 24077107 24081557 CTTGAACACGGAACAACGG 60 24081604 24081622 ACAAGTGATCTGCCCTGAG 59 Novel Rattus norvegicus 81 AABR07000714.2 ENSRNOG00000057722 ENSRNOT00000085871 3 1 1 90 1 24077107 24081557 CTTGAACACGGAACAACGG 60 24081611 24081629 TCTGGCCACAAGTGATCTG 60 Novel Rattus norvegicus 81 AABR07016589.1 ENSRNOG00000052148 ENSRNOT00000083675 3 1 1 87 14 105480737 105480758 AAGCCAACAGAACTTAAAGGTG 60 105480803 105484644 GGCAAATTCAAGAACCTTATGC 59 Novel Rattus norvegicus 81 AABR07016674.1 ENSRNOG00000055024 ENSRNOT00000082749 1 1 1 104 14 110103162 110234049 CTTATCACGTGGGAAGCTG 58 110103076 110103094 ATCAGAGACCTGTGCTGTC 59 Novel Rattus norvegicus 81 AABR07016672.1 ENSRNOG00000053953 ENSRNOT00000079374 3 1 1 95 14 110126476 110163490 TCTTATGCCAGGTGATGCC 60 110163549 110163567 GATGTTGATCCAATGGGCG 59 Novel Rattus norvegicus 81 AABR07001003.1 ENSRNOG00000053180 ENSRNOT00000081840 2 1 1 81 1 32453944 32475690 CACAGGAGATGCAGAGGAG 60 32475735 32475753 GATGGTGAAGGTCGTTGTG 59 Novel Rattus norvegicus 81 AABR07049148.1 ENSRNOG00000055285 ENSRNOT00000089642 1 1 1 80 5 107586008 107586825 AAACCATCAGTACTGGTGAC 58 107586868 107586886 ATTTGCTGGAGATGCTGTC 58 Novel Rattus norvegicus 81 AABR07030690.1 ENSRNOG00000059096 ENSRNOT00000089444 1 1 1 60 10 99771483 99771501 TTAGATGTTCAGCCCTGGG 59 99731179 99731197 GGCCAGTTGTCAAATTTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062068.1 ENSRNOG00000058192 ENSRNOT00000091238 2 1 1 76 4 160206120 160206138 CTCAGGCATCGAGATCGAG 60 160207333 160207352 GGCGTATATTTGCAGTTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07017176.1 ENSRNOG00000057844 ENSRNOT00000084363 2 1 1 80 15 15159563 15185089 TGCTAACGATGAAAGGAACC 58 15159502 15159520 TATGTCACAGGTGGTAGGG 58 Novel Rattus norvegicus 81 AABR07062111.2 ENSRNOG00000057585 ENSRNOT00000087809 2 1 1 81 4 161461619 161476136 AAGGACTGGAAGAAGACTGG 59 161461557 161461578 CAAATACCATCTCTGTTCCCTG 59 Novel Rattus norvegicus 81 LOC103692434 ENSRNOG00000058853 ENSRNOT00000083620 1 1 1 80 5 126222803 126222821 TTAAGTCCTGCATCCAACC 57 126222865 126223546 AGGAGATCACTTGGTGAGG 58 Novel Rattus norvegicus 81 AABR07062329.1 ENSRNOG00000051629 ENSRNOT00000087030 2 1 1 70 4 169280816 169280834 CTCAACCTGACCTTCCCAG 60 169287030 169287048 GATGATCACTGCTCTGCCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030939.1 ENSRNOG00000061691 ENSRNOT00000086613 3 1 1 80 10 110125576 110125594 TCCAGGTGAAATTGCTCAG 58 110125636 110126716 ACGTCTCCAAACAAAGTATCC 58 Novel Rattus norvegicus 81 AABR07045658.1 ENSRNOG00000055472 ENSRNOT00000086208 3 1 1 81 20 55724651 55729674 AGGAGATCATTAGCTGATGAGTG 60 55729709 55729733 GCCATGATACATCAATAGGAATCTG 60 Novel Rattus norvegicus 81 AABR07017491.1 ENSRNOG00000059269 ENSRNOT00000079751 3 1 1 84 15 23381793 23381811 CAGACATTTCACCTCCCAG 58 23381859 23382065 GATCATCAAGCCCTCTGTC 58 Novel Rattus norvegicus 81 AABR07017513.1 ENSRNOG00000060872 ENSRNOT00000080915 1 1 1 103 15 24879554 24879573 CTGAACTTGAACTGGGAACC 59 24879637 24888361 GGTAACCTATTCCAGGGTCTC 59 Novel Rattus norvegicus 81 AABR07031533.2 ENSRNOG00000052914 ENSRNOT00000084983 1 1 1 80 18 18301449 18301472 AACTAACTGGATACCTGAGAAGAG 60 18292170 18301415 GGATGCAAGGTAAAGTATCTATGC 60 Novel Rattus norvegicus 81 AABR07049682.1 ENSRNOG00000060658 ENSRNOT00000091707 1 1 1 60 5 132777766 132777785 ACATCAAGCTCATGTCACTG 58 132777804 132791315 GCTTCACCTCTAGGTAAATATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07049701.1 ENSRNOG00000060975 ENSRNOT00000088365 1 1 1 108 5 133890144 133892881 TCCCACCTTGTTTCACAGG 60 133890054 133890072 TCCTGTCTCAGTCTTTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062539.3 ENSRNOG00000053613 ENSRNOT00000080716 3 1 1 84 4 181705791 181706403 ATGTGCTTGTAAGCAGATGTG 59 181706449 181706467 AAACTGTCCTTGGAAGCGT 60 Novel Rattus norvegicus 81 AABR07049903.1 ENSRNOG00000057914 ENSRNOT00000087953 3 1 1 66 5 143851531 143851550 GACAGAAGGATCCAGAAGAC 57 143851577 143852416 CTTTACTGGTAAGGCAGTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07031931.1 ENSRNOG00000058859 ENSRNOT00000084025 1 1 1 80 18 39757016 39757037 GCAGAGTGTAGAGGATAAAGGA 59 39754671 39756977 AGTGGCAGAAGTAATTCACCT 60 Novel Rattus norvegicus 81 AC116285.1 ENSRNOG00000052566 ENSRNOT00000081190 2 1 1 81 15 34098505 34100425 ACATTGTTCCCAAAGAACCC 59 34100467 34100487 CTTCCATCCTTCTTAGACCAC 58 Novel Rattus norvegicus 81 AABR07063274.1 ENSRNOG00000052838 ENSRNOT00000080102 3 1 1 104 6 26142095 26145366 TTTGAGGCACTGTCTCAGAG 60 26145433 26145451 TCTACAGAGCAAGTTCCGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063508.1 ENSRNOG00000056107 ENSRNOT00000082063 2 1 1 60 6 32359990 32415000 CTTATAAGCTACATAGTGCCAGG 59 32359952 32359971 TAAGCAAAGGCAGGAGTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07063509.1 ENSRNOG00000052377 ENSRNOT00000085423 3 1 1 89 6 32440842 32460203 CATTCTCCAGAGCTGGAGAG 60 32440772 32440790 TACCTTCGAGCATCTGTGC 60 Novel Rattus norvegicus 81 AABR07001699.1 ENSRNOG00000052700 ENSRNOT00000077249 3 1 1 85 1 55356222 55359260 CTGGAAGGACTGAGGATCC 59 55356155 55356174 TGCACTCTGTTCATTCATGG 59 Novel Rattus norvegicus 81 AABR07032141.1 ENSRNOG00000061456 ENSRNOT00000084077 1 1 1 76 18 49224722 49224740 TTTGTTGTGTCAGGCACTG 59 49223973 49224682 TTCTGGTGGGCTCATAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AC133821.1 ENSRNOG00000055279 ENSRNOT00000084603 3 1 1 80 5 154372330 154372348 GAATCTGCTGAGGTTAGCC 58 154363539 154372286 GCGAAGGTTCTGTAATCCA 58 Novel Rattus norvegicus 81 AC118094.1 ENSRNOG00000058154 ENSRNOT00000087125 2 1 1 80 5 157140520 157141221 CACAGAAAGCAGTGGTTGG 59 157141264 157141283 CTTCAGGCAAGATGGATCCA 60 Novel Rattus norvegicus 81 AABR07018198.2 ENSRNOG00000057138 ENSRNOT00000081990 1 1 1 94 15 46523031 46527884 CTATATGGTCCTGGCTCCAG 59 46527941 46527959 AGAGGAAGTGACAGTCGTG 59 Novel Rattus norvegicus 81 AABR07018198.1 ENSRNOG00000055062 ENSRNOT00000077737 3 1 1 80 15 46537666 46537684 CTCTACTGGGAGGTGAGAG 58 46537727 46547647 GTAAGGCATCATGTTCCAGG 59 Novel Rattus norvegicus 81 AABR07063613.1 ENSRNOG00000053708 ENSRNOT00000089368,ENSRNOT00000087093 3 2 2 81 6 37195835 37199500 GGGACAAGAACAGGATGGA 59 37199543 37199563 CTTCCCTGAGAAGTGAATTGC 59 Novel Rattus norvegicus 81 AABR07018262.2 ENSRNOG00000054573 ENSRNOT00000085802 3 1 1 84 15 49540516 49540535 TGGCAGTCATATTTGTGGTG 59 49539432 49540469 GGTGGTAGCCTCTGAACTC 60 Novel Rattus norvegicus 81 AABR07018269.2 ENSRNOG00000052066 ENSRNOT00000085504 2 1 1 85 15 49614119 49619469 TCTCCAGTTCCAGCAAGTG 60 49614052 49614073 CGCAATGGATGAAGTCTTATGG 60 Novel Rattus norvegicus 81 AC103574.2 ENSRNOG00000055796 ENSRNOT00000079840 2 1 1 69 1 64235372 64236934 GTCACTAAGCAGACACAGG 58 64236967 64236985 AACTTGTCTGCTTTGACCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07050336.1 ENSRNOG00000054558 ENSRNOT00000079354 2 1 1 87 5 161523026 161523045 GCATTCATACAGGGACATCC 59 161523095 161524687 TACATCCGTTCTTTCTCGC 58 Novel Rattus norvegicus 81 AC141168.1 ENSRNOG00000061481 ENSRNOT00000079896 3 1 1 80 15 51097947 51103212 ACTTCTTTCCCATGCTTTAGTG 59 51097888 51097907 GTGCATCATTTCCACTGACC 60 Novel Rattus norvegicus 81 AABR07002010.1 ENSRNOG00000056327 ENSRNOT00000087034 2 1 1 82 1 64818706 64829986 GGAGTAAAGTAAGGGATGTTCTG 59 64818646 64818667 TTCAGAGGGATAACTGAATCGT 59 Novel Rattus norvegicus 81 AABR07063654.2 ENSRNOG00000056738 ENSRNOT00000078812 2 1 1 65 6 39982734 39982753 CTTGCCAGCCCAATATTCTC 59 39981947 39981965 TTGAGAGGATGACTCTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063654.1 ENSRNOG00000051754 ENSRNOT00000080278 1 1 1 94 6 40140391 40140413 GTCAGATAGAAGACTTCTACACC 58 40137560 40137579 GTTTCCACAATTTCTCCCAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07032289.1 ENSRNOG00000053900 ENSRNOT00000091628 1 1 1 81 18 59815367 59815385 ATTGGAGGTGTTGGGAGTC 59 59817053 59817071 TTTGTCTGGGTCAAGTTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032289.1 ENSRNOG00000053900 ENSRNOT00000091628 2 1 1 82 18 59815367 59815385 ATTGGAGGTGTTGGGAGTC 59 59817053 59817072 CTTTGTCTGGGTCAAGTTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07063682.1 ENSRNOG00000060065 ENSRNOT00000078200 3 1 1 81 6 41751481 41773177 GCATAGGCTGAGCATATGTG 59 41751419 41751441 TATATCCAGACTATAACACGGGC 59 Novel Rattus norvegicus 81 AABR07018503.2 ENSRNOG00000058815 ENSRNOT00000084849 1 1 1 82 15 62248565 62248584 CAATCAAAGACCACCTTCCA 58 62232226 62248520 TTCTCTGAGCCAAGAGGTG 59 Novel Rattus norvegicus 81 AABR07063743.2 ENSRNOG00000054777 ENSRNOT00000083510 1 1 1 80 6 45470733 45470752 GGATCGAGTGTTCAAATGCC 60 45469157 45470696 CTATAAAGACCTCTGATGGTTACTG 59 Novel Rattus norvegicus 81 AABR07032469.1 ENSRNOG00000058411 ENSRNOT00000081856 1 1 1 65 18 67748230 67748249 TGTCACTCCTGTCATTTGTC 58 67695169 67748202 TCTGGACTCAAGATGTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002677.2 ENSRNOG00000060041 ENSRNOT00000081418 1 1 1 104 1 80378583 80378601 ATCCCTGGCAGAAAGACTG 59 80378669 80382571 ATCTCCAGCACTGACAGTG 59 Novel Rattus norvegicus 81 AABR07051177.1 ENSRNOG00000058456 ENSRNOT00000084345 3 1 1 80 3 8727 8747 AAACTCTTCTGGCAAATCACC 59 8788 10097 CCTCTTGATGCATTATCGCA 59 Novel Rattus norvegicus 81 AABR07018837.1 ENSRNOG00000059235 ENSRNOT00000088967 1 1 1 80 15 75319066 75331266 GAATAAACGGTTACATGAGGC 58 75331305 75331326 TAACTGGAAATGTAGTTCCTGG 58 Novel Rattus norvegicus 81 AABR07019020.1 ENSRNOG00000061933 ENSRNOT00000082456 3 1 1 71 15 84004961 84004981 AGATCTACATCCATCTTGCCT 59 84005013 84009871 GGAGCAATGCAAACTTTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07064131.1 ENSRNOG00000059696 ENSRNOT00000085271 1 1 1 80 6 65779384 65782283 TGAGGAAATTGAAGAACTCTGG 58 65782323 65782342 ATAAATCAGTGCCGAGTCAG 58 Novel Rattus norvegicus 81 AABR07051332.1 ENSRNOG00000053371 ENSRNOT00000090398 3 1 1 131 3 4988254 4988272 TATGTGCAGCTCAACATGC 59 4988614 4988632 TTTCAGAGACAGCACTGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07051376.1 ENSRNOG00000057465 ENSRNOT00000087557 2 1 1 60 3 7033382 7033401 TTGACTCAGACCCTTCACAG 59 7033422 7033442 GGGACCTACTACAGAAATCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019254.2 ENSRNOG00000060194 ENSRNOT00000079870 2 1 1 80 15 96817445 96817465 ATAAAGGCAGAGTCTGTTGAC 58 96790502 96817406 TTAGCTGGAGGGATCTATAGAG 58 Novel Rattus norvegicus 81 AABR07051400.2 ENSRNOG00000059495 ENSRNOT00000085689 3 1 1 82 3 9333285 9333680 ATACTGGAGCCAATGGACC 59 9333221 9333240 TGAAGTGTTGAAACTGCAGG 59 Novel Rattus norvegicus 81 AABR07064373.1 ENSRNOG00000059292 ENSRNOT00000088398 2 1 1 80 6 77378728 77394035 TGAATACTGCTCTGGGATCAG 59 77378668 77378686 CGAACCTGACAGAGAAGGG 60 Novel Rattus norvegicus 81 AABR07032787.1 ENSRNOG00000052546 ENSRNOT00000088794 2 1 1 81 18 82089109 82108783 GTAACTGTTGACCTCTACTGTC 58 82108823 82108843 CTCTAGATGGACTCCATCCAC 59 Novel Rattus norvegicus 81 AABR07003007.1 ENSRNOG00000060688 ENSRNOT00000084795 3 1 1 64 1 92926571 92926590 ATCTTGATCCCTGACAGCAG 60 92926617 92927807 TTTCTGCTGTGGAAACTGG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07032816.1 ENSRNOG00000056823 ENSRNOT00000086996 3 1 1 66 18 84010730 84017955 CATGACAACATACGGCTGG 59 84010682 84010700 AACGTTGTTTGCAGAGGTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07064840.1 ENSRNOG00000061310 ENSRNOT00000088224 2 1 1 93 6 97456282 97457244 ATGAGACAACTGAACGGCT 59 97457300 97457319 TCTTCTGAATGAGCTGCTCC 60 Novel Rattus norvegicus 81 AABR07064867.2 ENSRNOG00000051551 ENSRNOT00000084980 3 1 1 86 6 98696932 98714075 TCACTCATCACGGAAATCCA 59 98714124 98714142 GCTTCAGTGTTCCCAAGTG 59 Novel Rattus norvegicus 81 AABR07051808.1 ENSRNOG00000056587 ENSRNOT00000080837 2 1 1 88 3 22636574 22637558 ACACGCAGGGATGTTACTC 60 22636504 22636524 CAAAGGCTGTAGAAATCTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07020696.1 ENSRNOG00000056686 ENSRNOT00000081626 2 1 1 83 13 35886853 35887288 AAGACATCACCAGCAGGTC 60 35886788 35886806 TCTTTCCATTCTGCACGGT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07051831.1 ENSRNOG00000015854 ENSRNOT00000021237 2 1 1 69 3 23762821 23762841 AGCAAGGTTTACTGAAGTGTC 59 23769032 23769050 TGGGACAGAATTTGGAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07020859.1 ENSRNOG00000056388 ENSRNOT00000089001 2 1 1 80 13 43748994 43749013 CTGGTAAGACATGAGAAGCA 57 43749053 43773098 CAGCTTCTCCCTTACTATTCTC 58 Novel Rattus norvegicus 81 AABR07065113.2 ENSRNOG00000053131 ENSRNOT00000081103 2 1 1 60 6 110258883 110258901 CCAACACTTCACAGAAACG 57 110258329 110258859 AGGGACCCAGAATGTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07020987.1 ENSRNOG00000059225 ENSRNOT00000091737 2 1 1 80 13 50809453 50810025 AACAGGAAGGGTAGAATTCCA 59 50810066 50810085 GTGAACAAGTATGGCCTTGG 59 Novel Rattus norvegicus 81 AABR07052091.1 ENSRNOG00000058954 ENSRNOT00000077139 1 1 1 62 3 36633391 36633410 CCGTGACTTTCCATAATGCT 58 36581248 36633366 AAGGGTTTAACCAGGACCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021018.2 ENSRNOG00000059794 ENSRNOT00000078481 2 1 1 80 13 53649159 53649177 CAGGCGACAAATACAGAGC 59 53649220 53651986 AGCTTTCTGCAGGTAAACAG 59 Novel Rattus norvegicus 81 AABR07052322.1 ENSRNOG00000061267 ENSRNOT00000086972 2 1 1 81 3 47554631 47554649 CCTCATCGTCCTAGTCCAG 59 47552675 47554588 GACTGTCTAGACAACATAGGC 58 Novel Rattus norvegicus 81 AABR07066020.1 ENSRNOG00000060878 ENSRNOT00000085492,ENSRNOT00000086332 3 2 2 87 9 604682 605043 TGTACTTGCTCTCCTGGAC 59 604613 604631 CTTGCCATAGATGCGATGC 60 Novel Rattus norvegicus 81 AABR07003468.1 ENSRNOG00000058191 ENSRNOT00000082080 2 1 1 84 1 110995837 111001832 CAGAAATGCAGAGAATTCCAG 57 111001877 111001896 CACATTGTACACAAGCACAG 58 Novel Rattus norvegicus 81 AABR07052452.1 ENSRNOG00000059803 ENSRNOT00000078191 1 1 1 81 3 54949322 54949341 AGACAGGGATCCTTACACTG 59 54948370 54949278 ATCTGGAGTCGGAACACTC 59 Novel Rattus norvegicus 81 AABR07065348.2 ENSRNOG00000055490 ENSRNOT00000083586 2 1 1 80 6 123092123 123092476 TACGCAAAGAACAGAAGGG 58 123092520 123092538 TGAGACAACAAGACCTTCC 57 Novel Rattus norvegicus 81 AABR07065348.1 ENSRNOG00000054396 ENSRNOT00000092058 3 1 1 80 6 123108565 123109600 CATCTCCAAGATGTCATATGAAGAC 60 123109638 123109656 TGGTTTGGAAGGATGACCA 59 Novel Rattus norvegicus 81 AABR07034293.2 ENSRNOG00000052632 ENSRNOT00000089170 1 1 1 81 11 62943409 62949854 GGTAGACAAGAAAGGTGCT 57 62943346 62943365 TGAACCTTTCTTGTCTACCC 57 Novel Rattus norvegicus 81 AABR07034457.1 ENSRNOG00000057765 ENSRNOT00000081844 1 1 1 74 11 72625590 72625608 CACTTAAAGCCTTGGCAGC 60 72639207 72639227 GGACTTGTATTTGTAGAGCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07034573.2 ENSRNOG00000056536 ENSRNOT00000085341 3 1 1 80 11 79092008 79093435 TCAAGGACCATACAGATGACC 59 79093474 79093495 ATATGCTCACCTTTAAAGGCTC 59 Novel Rattus norvegicus 81 AABR07052610.1 ENSRNOG00000052515 ENSRNOT00000091668 3 1 1 60 3 66075105 66080120 GGAAGAACATCCACTACATACTC 59 66075067 66075086 CAGTGTAGACCTGACACCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07021760.1 ENSRNOG00000059079 ENSRNOT00000079623 1 1 1 63 13 90160403 90160421 TACAGGATCTCTGCTCCTC 58 90167168 90167189 ATCAGATCACTAGTCGAATCTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07034679.1 ENSRNOG00000052500 ENSRNOT00000090340 1 1 1 92 11 83801330 83814221 AAATCATGGCCTGAAGCTG 59 83814277 83814295 ATTATTGCCCTGCCATAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052686.1 ENSRNOG00000060480 ENSRNOT00000086000 3 1 1 129 3 69246656 69267730 GAGACTCCTGAGAGGTGGA 60 69246545 69246565 CTGCAGTTTCTTTCTCAAGCA 60 Novel Rattus norvegicus 81 AABR07065476.2 ENSRNOG00000061068 ENSRNOT00000088039 3 1 1 60 6 130187200 130187219 GAACAGTTGGTAGACAGTCC 58 130186714 130186732 CATGATTTGCTCTGGAGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072264.3 ENSRNOG00000058902 ENSRNOT00000082278 2 1 1 80 11 86926581 86926600 CAGTGACAGGAAGTTGACAG 59 86926642 86926975 ACAGACGATTTGCTATCTGG 58 Novel Rattus norvegicus 81 AABR07034750.1 ENSRNOG00000060228 ENSRNOT00000090971 2 1 1 90 11 87346238 87346257 AGAATGGACCTGTCTTTGCA 60 87346310 87355144 ACAATGTCACCAACCTCCA 59 Novel Rattus norvegicus 81 AABR07034761.2 ENSRNOG00000055545 ENSRNOT00000089264 1 1 1 80 11 88542921 88542941 CAGATTAGTCACCCGTTTAGG 58 88542466 88542882 ATGATCAATCCTGGATGATGTG 58 Novel Rattus norvegicus 81 AABR07034991.1 ENSRNOG00000057612 ENSRNOT00000090701 3 1 1 80 12 2938840 2940283 GTTGGACTAAACTCCCTGTG 58 2938779 2938799 GTAACAGTTTCCACTGTCGAG 59 Novel Rattus norvegicus 81 AABR07065600.1 ENSRNOG00000059736 ENSRNOT00000082819 1 1 1 80 6 136898854 136898872 GGAATCTTGGCTGACTGGA 59 136898914 136899495 AGCGAATAATGATCTTTGCCC 59 Novel Rattus norvegicus 81 AABR07052897.3 ENSRNOG00000060635 ENSRNOT00000085939 2 1 2 80 3 83082222 83134230 AGGATTTCCAGGAACTTCAC 58 83082161 83082179 TCATTTGCTTCATCCAGCA 58 Novel Rattus norvegicus 81 AABR07022055.1 ENSRNOG00000061655 ENSRNOT00000077089 2 1 1 89 13 104672044 104673253 ATTGTGTTAAGTGGCAGCAG 59 104673305 104673323 TGATTCCCGATCCTCTTGC 60 Novel Rattus norvegicus 81 AABR07022056.1 ENSRNOG00000056806 ENSRNOT00000078696 1 1 1 80 13 104806683 104806701 CTGAGGATCACAGAGCAGG 60 104806745 104806763 TGTCTGGACTTGTGACTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065772.3 ENSRNOG00000051722 ENSRNOT00000077867 3 1 1 106 6 140608590 140608692 CATTTCCAAGCTGTGTCCT 58 140608502 140608520 TGAGAAGCCAGAGACAGTG 59 Novel Rattus norvegicus 81 AABR07022064.1 ENSRNOG00000053957 ENSRNOT00000092005 1 1 1 84 13 105472751 105472769 GTTCGTGCTGCTAGAACTG 59 105470449 105472703 GTGTTTGGCGTTATCCTGG 59 Novel Rattus norvegicus 81 AABR07022064.1 ENSRNOG00000053957 ENSRNOT00000092005 2 1 1 85 13 105472751 105472769 GTTCGTGCTGCTAGAACTG 59 105470448 105472702 AGTGTTTGGCGTTATCCTG 58 Novel Rattus norvegicus 81 AABR07065818.1 ENSRNOG00000055835 ENSRNOT00000071313 2 1 1 60 6 142757313 142757334 AGCTTTGTCTTTCTCTTCTTCC 59 142757195 142757213 GCAGTTGAACTTCGGAGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065889.2 ENSRNOG00000058118 ENSRNOT00000086776,ENSRNOT00000078681 3 2 2 88 6 143749809 143749911 TCCCTGCATATGTCTTGTCC 60 143749740 143749758 AGAGCAAGTCAGGCTTAGG 59 Novel Rattus norvegicus 81 LOC102548818 ENSRNOG00000056324 ENSRNOT00000078698 3 1 2 81 1 141944963 141944981 CTCAAGGACGATGTCTGCA 60 141945024 141945857 CTTTCTTCTTTGACCTGTGCT 59 Novel Rattus norvegicus 81 AC114460.2 ENSRNOG00000058477 ENSRNOT00000078130 2 1 1 71 1 142134733 142134751 TTGGATGAACCTCGCTCAG 60 142134504 142134524 CGTGTAGTCTGACACAAATGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07066188.1 ENSRNOG00000054742 ENSRNOT00000079245 1 1 1 60 9 4621542 4622735 AAAGGAATTGTGGGTGATTGG 59 4622755 4622775 CATCAAACCTCTCATTCTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053470.1 ENSRNOG00000058999 ENSRNOT00000084537,ENSRNOT00000078486 1 2 2 90 3 108624645 108640202 CAAGTAGCACGATGTGGAG 58 108624573 108624591 TCAAACAGTCCTTTGCAGC 59 Novel Rattus norvegicus 81 AABR07035506.1 ENSRNOG00000059429 ENSRNOT00000088655 3 1 1 101 12 18421366 18421384 CCCATCTCATTCACAGAGC 58 18419681 18421302 GAGTTGGGTGTAACTGAAGG 58 Novel Rattus norvegicus 81 AABR07004549.1 ENSRNOG00000059330 ENSRNOT00000086488 2 1 1 66 1 147424475 147424496 GCCACTTTCTAGATGAGAATGG 59 147423413 147424448 TTTCCTGCTGAGAAAGGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07066636.1 ENSRNOG00000052783 ENSRNOT00000085782 2 1 1 80 9 12068260 12068867 CTAGCATTGACAGGAACATCTC 59 12068908 12068926 GCATGTTCAGGATATCCGG 58 Novel Rattus norvegicus 81 AABR07004703.1 ENSRNOG00000051996 ENSRNOT00000085870 1 1 1 80 1 151211013 151211031 GGAATTCCAAGCTACAGGG 58 151211072 151216428 CATCCTGTTTGTTTAGCTAGAG 57 Novel Rattus norvegicus 81 AABR07053516.2 ENSRNOG00000060187 ENSRNOT00000077223 1 1 1 66 3 112330371 112330389 GAAGTGAACAACGGACACC 59 112333356 112333377 CGTTAGAAGCTTAAGAGTTCAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07035650.1 ENSRNOG00000061750 ENSRNOT00000087357 3 1 1 96 12 20785586 20832374 AGAGAAACAGGAAGGGATCAC 60 20785510 20785528 CCATGGTGAGAGGTCATGG 60 Novel Rattus norvegicus 81 AABR07004823.1 ENSRNOG00000053655 ENSRNOT00000079979 3 1 1 98 1 159635514 159635534 GATAGCAAAGGCTATATGCCC 59 159634134 159635456 ATATCTTTGCCTCATTGTGCC 59 Novel Rattus norvegicus 81 AC133383.1 ENSRNOG00000060876 ENSRNOT00000084549 3 1 1 86 1 162733388 162733670 GGGATAGTTTCTGATTCTTGGA 58 162733717 162733735 TCCTTTGCTCATGTACAGC 58 Novel Rattus norvegicus 81 AABR07024875.1 ENSRNOG00000053348 ENSRNOT00000080272 1 1 1 76 16 20362912 20362930 CCAGGAACAGCTCTGATCC 60 20361557 20361575 GAACACCATAGCATGTCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035780.6 ENSRNOG00000061778 ENSRNOT00000083323 3 1 1 81 12 22362443 22362863 CCGAAATCACTCTGCAGTG 59 22362907 22362926 TCCAAATTGGAACAGGAAGC 59 Novel Rattus norvegicus 81 AABR07035782.1 ENSRNOG00000057201 ENSRNOT00000087948 1 1 1 80 12 22386804 22386823 TGTGACTTTGGTTATGGAGG 58 22386866 22388592 TAAGCTGGATGCTTCTAGC 57 Novel Rattus norvegicus 81 AABR07035796.1 ENSRNOG00000057927 ENSRNOT00000090331 2 1 1 64 12 22601987 22604866 GTGGGTTTCAAGAAGCCAG 59 22604893 22604912 TAAACTCACACCTATGGCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053850.1 ENSRNOG00000059311 ENSRNOT00000081306 3 1 1 97 3 130962637 130962656 CCATTTCCTTGCTTCCTACG 59 130962711 130964789 TTATCATGATCCGGTAGATCTGTC 60 Novel Rattus norvegicus 81 AABR07035868.1 ENSRNOG00000056105 ENSRNOT00000078623 2 1 1 81 12 26242358 26246061 TGTAGCTCTGAGTGTTATACTCC 59 26246102 26246120 CAGCTGGTCTTTGGATGGA 60 Novel Rattus norvegicus 81 AABR07025386.1 ENSRNOG00000052230 ENSRNOT00000080111 2 1 1 101 16 36297242 36297261 GAAGATGGGTGAGAGTTTGC 59 36295562 36297178 GTTAGCTTCTCCGGACCTC 60 Novel Rattus norvegicus 81 AABR07054126.1 ENSRNOG00000054946 ENSRNOT00000084175 1 1 3 94 3 142319180 142319198 AACTCCACCATGGCTAGAG 59 142280709 142319124 CAGGATAAACTTCAATGCCCT 58 Novel Rattus norvegicus 81 AABR07025818.2 ENSRNOG00000058850 ENSRNOT00000079165 3 1 1 98 16 51791908 51791927 CTCTTCTACCACACCAACCA 59 51791096 51791847 TTTGCAGAGACATTGGTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036080.1 ENSRNOG00000051818 ENSRNOT00000077376 3 1 1 62 12 33687323 33687344 CCATCCTTTCTAAATTCAAGGC 58 33686612 33687301 TGATCAATCACTGGACACCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072936.1 ENSRNOG00000059752 ENSRNOT00000089535 1 1 1 109 3 148132297 148132315 GAACAACGCTGTAGCTCTC 59 148131686 148132227 CAAGATGATTTCATCAACGGTG 58 Novel Rattus norvegicus 81 AABR07005758.1 ENSRNOG00000057349 ENSRNOT00000086583 1 1 1 91 1 196399107 196415135 TATGTCTGAATCAAGGTCTCTGG 60 196399038 196399059 GCAGCTAGGATTTAACCATGTC 60 Novel Rattus norvegicus 81 AABR07067405.1 ENSRNOG00000055425 ENSRNOT00000089959 3 1 1 80 9 43503763 43503929 ACACAGTAGATATAGAGGATACGC 59 43503963 43503986 CTCTACATCTATGGTGTACTCCTC 60 Novel Rattus norvegicus 81 AABR07067456.1 ENSRNOG00000058462 ENSRNOT00000086954 3 1 1 123 9 46890409 46890428 GTAACTGAGAACTGCCAGAG 58 46890514 46891220 TGAAGTTGACACAGCTTCC 58 Novel Rattus norvegicus 81 AABR07067501.1 ENSRNOG00000057874 ENSRNOT00000089189 3 1 1 81 9 49510110 49510715 AAAGCTGGTTTGAGTCTCAG 58 49510759 49510777 CCAATCTGTGAGACTCTGC 58 Novel Rattus norvegicus 81 AABR07026032.1 ENSRNOG00000054809 ENSRNOT00000079224 1 1 1 90 16 60015117 60015135 CCGAAGAGTGGAGAGTGTG 60 60011996 60015063 TGAGGCCACAATCCTTCTC 59 Novel Rattus norvegicus 81 AABR07026032.1 ENSRNOG00000054809 ENSRNOT00000079224 2 1 1 101 16 60015128 60015146 AGATGAAGTGCCCGAAGAG 60 60011996 60015063 TGAGGCCACAATCCTTCTC 59 Novel Rattus norvegicus 81 AABR07054487.1 ENSRNOG00000061326 ENSRNOT00000087135 3 1 1 80 3 156368659 156368678 AATGTCCAGTCAGAAGACAC 58 156368509 156368617 GTCAGACTTTCCCATCTGTG 58 Novel Rattus norvegicus 81 AABR07036413.1 ENSRNOG00000054311 ENSRNOT00000084328 1 1 1 61 12 42519289 42519308 GGGATCTCAGATACCAACCG 60 42518433 42518451 CATGACGGAGATGGAACCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07026137.1 ENSRNOG00000054486 ENSRNOT00000084407 2 1 2 83 16 65194757 65194778 GATGGAGTTTCCCTATCAACTG 59 65194822 65254092 CACTTAGCGCTCCTTTCAG 59 Novel Rattus norvegicus 81 AABR07005955.1 ENSRNOG00000053950 ENSRNOT00000081722 1 1 1 80 1 208694325 208694343 TTGCAACTGTGAAGACCCA 60 208684241 208694281 ATGATGAGGCCTAAGCCAG 59 Novel Rattus norvegicus 81 AABR07036452.1 ENSRNOG00000058699 ENSRNOT00000088109 3 1 1 83 12 43658332 43658351 GAACTTTCTTGCCAGCTTCC 60 43658394 43658551 TTTCCCAACATCTGATGATTGG 59 Novel Rattus norvegicus 81 AABR07067775.1 ENSRNOG00000056531 ENSRNOT00000078499 2 1 1 81 9 63406269 63406287 ACGAGAAACCACTCTTCTG 57 63406331 63408030 AATCTAACACCTGGAGTGTG 57 Novel Rattus norvegicus 81 AABR07054565.1 ENSRNOG00000053069 ENSRNOT00000079564 3 1 1 81 3 160993305 160993323 CAGGCTTCAGGAAGATCAG 58 160993367 161013973 AGAGTGTCCTTCTCTTCCTC 58 Novel Rattus norvegicus 81 AABR07036531.1 ENSRNOG00000061520 ENSRNOT00000090837 2 1 1 60 12 46494668 46495869 AATACACTTAGAGCATCGGTAGG 60 46495888 46495907 TCAAACCTCCTCAAACCTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07036531.1 ENSRNOG00000061520 ENSRNOT00000090837 3 1 1 60 12 46494666 46495866 CAAATACACTTAGAGCATCGGT 59 46495887 46495905 AAACCTCCTCAAACCTCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AC097575.2 ENSRNOG00000060790 ENSRNOT00000079447 3 1 1 62 12 46859496 46859514 CATTCACCAGTACCTGCAG 58 46858336 46858354 GAGATAGTTCCCGGGAAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07026339.1 ENSRNOG00000061696 ENSRNOT00000086537 3 1 1 96 16 72698796 72698953 CAGTTCGGATGCTGTTACTG 59 72699012 72699030 TACTAGCTGAGGCACTTGC 60 Novel Rattus norvegicus 81 AABR07054662.1 ENSRNOG00000057226 ENSRNOT00000083036 3 1 1 84 3 166270481 166278485 CTGCTGAATTAAGCAACTCTG 58 166270417 166270436 TGTTGTCAGGATGAATGCAG 59 Novel Rattus norvegicus 81 AABR07036640.1 ENSRNOG00000054829 ENSRNOT00000085103 1 1 1 60 12 51366311 51366330 AGGAAGGCCTGTTAGAACAC 60 51362297 51362316 TGGATCAGGTTCCTCTTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054752.2 ENSRNOG00000056980 ENSRNOT00000086486 1 1 1 80 3 168634408 168634430 CTTCCTTGGCTCCATAAATTACC 60 168623833 168634368 AGAAACTGGGACACCTGTG 60 Novel Rattus norvegicus 81 AC111319.2 ENSRNOG00000058926 ENSRNOT00000081933,ENSRNOT00000087244 1 2 2 60 9 71398076 71398094 TCCATGTTTGACAGCTTCC 58 71388832 71388852 CAGACTATCACATGGTTCTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07006097.1 ENSRNOG00000057099 ENSRNOT00000086155 3 1 1 87 1 219755962 219758195 GGATTTCGAGTTCAAGGTCC 59 219755894 219755912 ATGGCTTAGCAGGACTGAC 60 Novel Rattus norvegicus 81 AABR07022104.1 ENSRNOG00000055891 ENSRNOT00000078522 1 1 1 60 13 108021431 108021450 AGATTTCAAGTGCTGTGGTG 59 108021473 108032585 CATTCCTGGGAGGGAACTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07022108.1 ENSRNOG00000052739 ENSRNOT00000088993 2 1 1 80 13 108273603 108274869 CTTTCTCAGGATGTGTCCCA 60 108273542 108273562 ACCCTGATCTATAATGTCCCG 59 Novel Rattus norvegicus 81 AABR07022162.2 ENSRNOG00000058314 ENSRNOT00000087172 3 1 1 86 13 110554286 110554304 TCATTGTAGCAGCTTTGGG 58 110554354 110554798 TTATCTATTGGCTGCTGCC 58 Novel Rattus norvegicus 81 AABR07006328.1 ENSRNOG00000059146 ENSRNOT00000087913 3 1 1 61 1 229097609 229097628 GGACTTCTCATTGCAGACAC 59 229097650 229100203 CTTCTTGCTCCTTGAACAAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07037896.1 ENSRNOG00000058952 ENSRNOT00000081910 3 1 1 80 X 35154476 35154497 TAACGTCTATGGCAATATGCAG 59 35151746 35154438 TCCTGAAGAAATTCTCGGAGAG 60 Novel Rattus norvegicus 81 AABR07055162.1 ENSRNOG00000052669 ENSRNOT00000089774 3 1 1 92 7 241064 245331 ATAGTTCCTACCGCAACAC 57 240990 241009 GTTGTCTGTTCTCATTCAGC 57 Novel Rattus norvegicus 81 AABR07026539.2 ENSRNOG00000060874 ENSRNOT00000077531 2 1 1 78 16 82430270 82430288 CTTTACACTCCGCTCTCCA 59 82430425 82430443 ATTAGCAGAGGCATGGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07055885.1 ENSRNOG00000059026 ENSRNOT00000089438 1 1 1 80 7 14838379 14838397 TTTGACCCAGAAAGTCGTC 58 14838441 14838705 CTGTCCTATGCAGTTCCTG 58 Novel Rattus norvegicus 81 AABR07055885.1 ENSRNOG00000059026 ENSRNOT00000089438 3 1 1 80 7 14838377 14838395 GCTTTGACCCAGAAAGTCG 59 14838439 14838703 GTCCTATGCAGTTCCTGGG 60 Novel Rattus norvegicus 81 AABR07026565.2 ENSRNOG00000059439 ENSRNOT00000088632 1 1 1 60 16 83862315 83862335 CATCTAAGCTAGGGAGAAAGG 57 83862355 83862375 AGATACAGAAAGCAGTATGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006654.1 ENSRNOG00000051821 ENSRNOT00000077989 1 1 2 80 1 244421286 244540122 CTTTCCTCTTATGTCATGTGCTG 60 244421228 244421246 AGTTAGAGTGCAAGCAGGT 59 Novel Rattus norvegicus 81 AC098022.2 ENSRNOG00000054594 ENSRNOT00000081706 1 1 1 80 7 20106042 20106063 CATCTGTAGTGTGGATATCTGG 58 20103497 20104720 GAATAGGCATGACCTTTATTGG 57 Novel Rattus norvegicus 81 AABR07039236.1 ENSRNOG00000059710 ENSRNOT00000082144 2 1 1 80 X 72863010 72863030 AGGAATATTACGATTGCGACG 59 72859442 72862970 TCTTCTACACCATCTCCATGG 59 Novel Rattus norvegicus 81 AABR07056156.1 ENSRNOG00000061013 ENSRNOT00000081988 2 1 1 131 7 20629386 20629404 CATGAGTGTAGGAGAGCCC 59 20629496 20713759 AGACTGATTCTTGATGTAGCCA 59 Novel Rattus norvegicus 81 AABR07056200.1 ENSRNOG00000058241 ENSRNOT00000077916 2 1 1 113 7 21203519 21204243 AACTTCACCAGATGGTGCT 59 21203424 21203442 TGTCTTGCTGCTACTCAGG 59 Novel Rattus norvegicus 81 AABR07026704.1 ENSRNOG00000053217 ENSRNOT00000083978 1 1 1 83 16 90280281 90282431 GGGAGGAAGTTATAATGTACAAGC 59 90280221 90280239 GTGTAAACCATGGGTTGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056422.1 ENSRNOG00000059037 ENSRNOT00000086387 3 1 1 103 7 24672147 24672166 ACTATTCCAGGCAGATGGTC 59 24672924 24672942 TACCTGCTCTATGCCATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC130862.4 ENSRNOG00000059363 ENSRNOT00000088098 2 1 1 86 X 105536536 105536554 GTATCTGTGGATCTCGCTC 57 105536601 105537311 CTTCTTGCAGATTTGATTCTGG 58 Novel Rattus norvegicus 81 AC096330.1 ENSRNOG00000052291 ENSRNOT00000081446 1 1 1 80 1 256934621 256935409 TTTGAACACAGGTTTGATCCC 59 256934561 256934579 CGTCACAATGGTGGTTCTC 59 Novel Rattus norvegicus 81 AABR07056517.1 ENSRNOG00000057959 ENSRNOT00000087144 1 1 1 60 7 28372129 28372310 TTTGAAGGTTGACGACCTC 58 28372331 28372352 CACAAGATCTGGAGGTATTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07068997.1 ENSRNOG00000060907 ENSRNOT00000080435 2 1 1 84 8 4785444 4785462 TTACCAAGCTACCAGGGAG 58 4738375 4785399 AAGCTTGGAGGTAATACATCAG 58 Novel Rattus norvegicus 81 AABR07006894.1 ENSRNOG00000051771 ENSRNOT00000091124 2 1 1 125 1 263013805 263013823 CTATGACATCCCTCGGGTC 59 263012463 263013717 GTTTCCGGTATCTTGTGCTG 59 Novel Rattus norvegicus 81 AABR07069067.1 ENSRNOG00000060166 ENSRNOT00000077688 1 1 1 65 8 6963066 6987213 TCTTTGCCCAGTTCAAGGA 59 6963019 6963037 TTTGTAGGCAGTCTGACAC 57 Novel DesignRelaxed Rattus norvegicus 81 AABR07056683.1 ENSRNOG00000061791 ENSRNOT00000083290 3 1 1 63 7 36160461 36160479 AAATCCATCCCTCAAGCCT 59 36160504 36164761 TCATTACACAAGGAGGAAAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07069186.1 ENSRNOG00000060057 ENSRNOT00000077533 1 1 1 80 8 10985849 10986636 GCTCCAATTATCAGTTTCTCCT 58 10986676 10986695 GAACTCTGGCTAAGTAGTGG 58 Novel Rattus norvegicus 81 AABR07069186.1 ENSRNOG00000060057 ENSRNOT00000077533 2 1 1 80 8 10986715 10987485 AGCTCTTAACTGACTCTGCC 60 10987523 10987546 CAAGTTGTTGACACTGTAGATCTC 60 Novel Rattus norvegicus 81 AABR07069197.1 ENSRNOG00000059516 ENSRNOT00000084249 3 1 1 81 8 11546919 11548906 CCAGCTCAATTCCTAAGATACAG 59 11548944 11548965 TATCCACAAAGCCCATATTCCA 60 Novel Rattus norvegicus 81 AABR07027243.1 ENSRNOG00000061345 ENSRNOT00000089652,ENSRNOT00000080985 1 2 3 86 17 20998251 20998269 AGCTCTCCCTATTTCTGGT 57 20998318 20999935 GAATTCTACTCCTCGGACAC 58 Novel Rattus norvegicus 81 AABR07027309.1 ENSRNOG00000060680 ENSRNOT00000082678 3 1 1 94 17 23795803 23803933 GACAGGATCTAGATCCTGACTG 59 23803987 23804006 AAGCAGGAGTTATCTGCTGG 60 Novel Rattus norvegicus 81 AABR07027321.1 ENSRNOG00000056758 ENSRNOT00000091716 1 1 1 81 17 24506740 24508088 ACTGAAGAGAAACTGGAAGAG 57 24506679 24506698 CCCGATTGTCCTTATATGCA 58 Novel Rattus norvegicus 81 AABR07069360.1 ENSRNOG00000057602 ENSRNOT00000078630 1 1 1 83 8 18225303 18225324 GTGAAGCCTTTAGGACAAACTC 60 18225368 18226136 TGAGTCTTCCCTGCAATGG 60 Novel Rattus norvegicus 81 AABR07043031.3 ENSRNOG00000059345 ENSRNOT00000081723 2 1 1 80 19 18024466 18024486 ATACGGCATCATCTCATTTCC 58 18021991 18024426 CACAAGGAGTAATCACCTCTG 58 Novel Rattus norvegicus 81 AABR07069473.1 ENSRNOG00000056108 ENSRNOT00000083919,ENSRNOT00000087743 3 2 3 82 8 23495990 23496012 GTACAGCATTATTAGCGTGTACC 60 23496051 23509007 GACATTTCCTTTCAACCTTGCT 60 Novel Rattus norvegicus 81 LOC102546383 ENSRNOG00000052557 ENSRNOT00000083644 1 1 1 80 17 27390048 27390066 TCACCTATCAGGACCAAGC 59 27390109 27393487 CAACAGGAATAGACAGCACC 59 Novel Rattus norvegicus 81 AABR07057203.1 ENSRNOG00000059338 ENSRNOT00000086821 3 1 1 62 7 60282578 60282596 CGAAGAGAAGTGTGAGGGA 59 60283358 60283376 GACAGTGTCTTTGCCATGC 60 Novel DesignNoJunction Rattus norvegicus 81 AC131806.2 ENSRNOG00000057586 ENSRNOT00000084513 2 1 1 60 19 22770723 22770742 ATTACTTCTCTTCAACGGCT 57 22770763 22775612 TTAACAGTGAGTAGGGTTAGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07057263.1 ENSRNOG00000057938 ENSRNOT00000091572 2 1 1 78 7 63270919 63270937 ATTGAGCTGGAGTCAGCAG 60 63269739 63270879 CCTGGGACATATTTAGCATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069733.1 ENSRNOG00000058081 ENSRNOT00000082354 3 1 1 101 8 38422276 38422297 TCAGACTCCAGTGAGATTTGTC 60 38421821 38422219 CTGAAATGATAGTTCTGTGAGCAG 60 Novel Rattus norvegicus 81 AABR07043429.1 ENSRNOG00000059075 ENSRNOT00000079937 3 1 1 80 19 28317992 28318645 CTTCTATCACAACCTGCACAG 59 28317932 28317951 CACTCCTGCTTCAATGTGAC 59 Novel Rattus norvegicus 81 AABR07043696.1 ENSRNOG00000052825 ENSRNOT00000090201 3 1 1 90 19 36108351 36109403 CATGTGGAATGTGGAAGGC 59 36109457 36109475 TTCACCCTCTCCTCTTCCT 59 Novel Rattus norvegicus 81 AABR07028907.1 ENSRNOG00000057054 ENSRNOT00000085269 1 1 3 112 10 23510 23534 GGAGCGACTTTATATCTTCTAAGTC 59 16274 23440 CTGTGGCATGATGTCTCCA 60 Novel Rattus norvegicus 81 AABR07007409.1 ENSRNOG00000058632 ENSRNOT00000084327 3 1 1 82 2 13055058 13055082 GTGTGAATAGAATCAGAAGGTTCTC 60 13054473 13054491 CTCCTGAAGCTATCACCGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029164.1 ENSRNOG00000053718 ENSRNOT00000085593 3 1 1 67 10 10921316 10943249 AGTTTGCAAAGACTCTGCAG 59 10921268 10921286 AACAGTCTCCACAGTGCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07057848.1 ENSRNOG00000058219 ENSRNOT00000082296 2 1 1 108 7 90747073 90749839 CTGCCATCTAATGTGATGCT 58 90746984 90747005 AATCTAGTGCAGAGATTCTGAG 58 Novel Rattus norvegicus 81 AABR07058017.2 ENSRNOG00000053624 ENSRNOT00000079983 3 1 1 81 7 98718865 98722187 CTTATTAGTTGGAGGCCGG 58 98718802 98718820 CTAGACACGAAGTCCATGG 57 Novel Rattus norvegicus 81 AABR07007693.1 ENSRNOG00000055870 ENSRNOT00000090810 1 1 1 80 2 24557481 24557500 TCTTAGGAGTCCATGCTTCC 59 24558578 24559236 GTGCCAATTCTCTATCACTTCAG 60 Novel Rattus norvegicus 81 AABR07007693.1 ENSRNOG00000055870 ENSRNOT00000090810 2 1 1 84 2 24557477 24557497 TTTCTCTTAGGAGTCCATGCT 59 24558578 24559236 GTGCCAATTCTCTATCACTTCAG 60 Novel Rattus norvegicus 81 AABR07041361.1 ENSRNOG00000058857 ENSRNOT00000077982 1 1 1 61 X 127335792 127335811 AGTATCCAAGGTATCCACCA 58 127334991 127335009 TTACACCTGCTTCAAGTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07029451.1 ENSRNOG00000056168 ENSRNOT00000077723 1 1 1 64 10 29084458 29084478 CTCCTCTGCTTACATTAGGAC 58 29085432 29085453 GCTTCTTCAGTCCTGTATTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029489.1 ENSRNOG00000051759 ENSRNOT00000085947 2 1 1 63 10 30546878 30555478 TAATCTGCAACTGCCAGCT 60 30546833 30546852 CCCTTTGCAATGGTACAGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07029535.1 ENSRNOG00000054345 ENSRNOT00000084631 1 1 1 84 10 33227266 33227284 TGTCCTTGGTACTGAAGCC 59 33227329 33227906 ATTTCCACACTCTTCATCACTG 59 Novel Rattus norvegicus 81 AABR07029535.1 ENSRNOG00000054345 ENSRNOT00000084631 3 1 1 85 10 33227266 33227284 TGTCCTTGGTACTGAAGCC 59 33227329 33227907 GATTTCCACACTCTTCATCACTG 60 Novel Rattus norvegicus 81 AABR07058383.2 ENSRNOG00000053930 ENSRNOT00000085641 2 1 1 92 7 113338855 113357240 AGTAACATGTGAACAGGTCC 58 113357294 113357313 TTGGCTTACAACTGTTTGTG 57 Novel Rattus norvegicus 81 AABR07070198.1 ENSRNOG00000058419 ENSRNOT00000090752 1 1 1 78 8 57462872 57462893 GACAAAGGACCCTTTATTTGAG 57 57459889 57459912 GTGCTATCTATGAAGAATCTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058410.2 ENSRNOG00000053874 ENSRNOT00000080383 2 1 1 80 7 114895895 114910217 CTTGAGCAACAGAAGGGAG 58 114895833 114895852 AATGTATGAGAACTGCGTCC 58 Novel Rattus norvegicus 81 AABR07042135.1 ENSRNOG00000054534 ENSRNOT00000091535,ENSRNOT00000086794 2 2 2 123 X 149273959 149273977 GAAGAGCCTACACAGAGCA 59 149274236 149274254 GAGCCAGCACTTCTTTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AC127919.1 ENSRNOG00000054996 ENSRNOT00000089246 3 1 1 80 10 40727283 40727303 CATCACAAATCCTGATTTGCC 58 40727344 40728519 AAGATCATTGAACCGCTGTG 59 Novel Rattus norvegicus 81 AABR07029617.1 ENSRNOG00000059529 ENSRNOT00000091350 3 1 1 80 10 41145703 41146330 TTTCCTATCTCAAGGTGGGA 58 41146372 41146391 CCAAGGTATGACAAGGAACG 59 Novel Rattus norvegicus 81 AABR07070335.1 ENSRNOG00000053878 ENSRNOT00000085846 1 1 1 90 8 66066061 66066081 GCTTCCTTATCTGCTAATGGG 59 66064556 66064577 GATGCCAAGCCAAATTATATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027919.1 ENSRNOG00000057076 ENSRNOT00000091951 3 1 1 80 17 49053364 49053382 AAGAGGAGTATCCTCCCAC 58 49035693 49053323 CTGGATAACTTTCTTCTCAGCT 58 Novel Rattus norvegicus 81 AABR07070341.1 ENSRNOG00000053021 ENSRNOT00000078877 1 1 1 77 8 66356776 66356797 AGATTCTGAAGCAAGAGAAGAG 58 66356601 66356619 TTCCATAGGTCACAGCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044367.1 ENSRNOG00000052534 ENSRNOT00000081627 1 1 1 60 20 3520158 3524018 GTACAGTGATACTGAACCCAC 58 3524040 3524058 CAGTTCAGCGGTAAAGCAC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07044414.1 ENSRNOG00000059927 ENSRNOT00000081316 3 1 1 100 20 5214633 5214651 GATCTCAGTCCTGAGGAGG 58 5214263 5214572 ATGTGGTACATGTTGACAACTC 59 Novel Rattus norvegicus 81 AABR07070352.1 ENSRNOG00000057304 ENSRNOT00000090789 2 1 1 89 8 66731702 66731720 GTACTGAAGGCCACTCAGG 60 66730714 66731652 GTTGTTTCTCTTGTCGAGTCAC 60 Novel Rattus norvegicus 81 AABR07044415.1 ENSRNOG00000055766 ENSRNOT00000079282 3 1 1 114 20 5261161 5261539 TTGCAGAGATTCTCCACTG 57 5261616 5261635 ATTCTCAGCTTCTCCATTGG 58 Novel Rattus norvegicus 81 AABR07028094.1 ENSRNOG00000052792 ENSRNOT00000080838 2 1 1 75 17 56876261 56876279 CTCCAACCATGTCCTGGAG 60 56876318 56879352 GATCAAAGGTGAGAAGCCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07059004.1 ENSRNOG00000051731 ENSRNOT00000085430 1 1 1 80 4 860281 860299 TGACCAGTTTGACAAGCCT 60 860342 865279 TCTTCAAGTTCACTGTCCCA 59 Novel Rattus norvegicus 81 AABR07007878.1 ENSRNOG00000059628 ENSRNOT00000088094 1 1 1 80 2 32553194 32553213 AATGTCATCAGGCAAAGCAG 59 32530480 32553153 ACTGATTATCAGCTGGTCTGG 60 Novel Rattus norvegicus 81 AABR07007980.2 ENSRNOG00000057850 ENSRNOT00000082352 3 1 1 82 2 37032025 37032044 TGCATGAGACCTACAAAGAC 58 37023648 37031980 CACGATTACACTGGTTGGA 58 Novel Rattus norvegicus 81 AABR07059258.1 ENSRNOG00000060937 ENSRNOT00000090966 3 1 1 161 4 12472121 12472139 CAAGGTGGCCTATGAAAGC 59 12366396 12471999 GAAATCTCAACTTGCTTGACAC 59 Novel Rattus norvegicus 81 AABR07044671.1 ENSRNOG00000061116 ENSRNOT00000081523 1 1 1 81 20 16652570 16652590 GCAATGCTCTTTGGAAATGTC 59 16641968 16652530 CTTATTTGCGTCGTATACATGC 58 Novel Rattus norvegicus 81 AABR07070799.1 ENSRNOG00000058073 ENSRNOT00000078973 2 1 1 66 8 84681148 84681167 GGAAAGAAACAAATGCCAGG 58 84671566 84681119 TTTGAAGAGGCTCTTTCCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028469.2 ENSRNOG00000051853 ENSRNOT00000084039 1 1 1 83 17 71451028 71451047 AATCAGCTTCTCAAGGACAG 58 71451093 71522293 CTTTAGTGCCAACCTTCCT 57 Novel Rattus norvegicus 81 AABR07008066.3 ENSRNOG00000056624 ENSRNOT00000085890 1 1 1 80 2 41526713 41526732 TCTGAGACCTGAACAATGAC 57 41526772 41528230 GGCTTCATCAGTTCTTTAACAG 58 Novel Rattus norvegicus 81 AABR07044805.1 ENSRNOG00000055873 ENSRNOT00000091093 3 1 1 99 20 21197224 21212263 CTGGAAAGTTTCCAGCTCTC 59 21212324 21212343 TTACCTGTTCAAGCTGAACG 59 Novel Rattus norvegicus 81 AABR07059780.1 ENSRNOG00000060558 ENSRNOT00000089406 3 1 1 86 4 35409353 35409374 GGATTAGAGCAACTGACAAAGG 59 35409418 35427074 CAATTGCCAAGAAATCACTCTG 59 Novel Rattus norvegicus 81 AABR07044805.2 ENSRNOG00000056976 ENSRNOT00000090472 1 1 1 80 20 21216963 21219173 ACAAGATACCCTACATAGTAGCAG 59 21219210 21219230 ATTGTGCTGAAACTCTTCCAC 59 Novel Rattus norvegicus 81 AC141220.1 ENSRNOG00000059795 ENSRNOT00000083975 3 1 1 61 17 76305660 76305678 CATCACTGCCTTCTCACAG 58 76306270 76306289 AAGTTCCAGAGTACAGCCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AC130585.1 ENSRNOG00000052904 ENSRNOT00000082020 2 1 1 81 8 99958629 99960515 GATTGACAGGTTGTTCATACAG 58 99958569 99958588 TCTTTCTAGGTTCTTGCCTC 57 Novel Rattus norvegicus 81 AABR07071167.2 ENSRNOG00000052169 ENSRNOT00000079806 2 1 1 93 8 103145876 103145896 CTATCACAAGGACAGTGTCAG 58 103145949 103147610 ATGTATCTGGTACACCACCTC 59 Novel Rattus norvegicus 81 AABR07044962.1 ENSRNOG00000056428 ENSRNOT00000089619 3 1 1 80 20 28367445 28369485 GCTAGATATGATACTGGAGCTG 58 28369526 28369544 TGAGTTCCACTGTAAGCCA 59 Novel Rattus norvegicus 81 AABR07060062.1 ENSRNOG00000055894 ENSRNOT00000082083 1 1 1 60 4 52015167 52015188 TTACATTCCACCTTGTGTTCTC 59 52017661 52017679 TGAAGATACTCAAGGGCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07072837.1 ENSRNOG00000054949 ENSRNOT00000080679,ENSRNOT00000077252 1 2 2 83 20 41022101 41023151 GTTGACTGGTAGATCCCAGG 60 41022037 41022055 TCATCTTCTCCTAGCGCTG 59 Novel Rattus norvegicus 81 AABR07071409.1 ENSRNOG00000055782 ENSRNOT00000084073 1 1 1 84 8 114178845 114178863 TTAAACAACCACACCGGTC 58 114176736 114178797 AAAGCAACTTCACAGGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07045483.1 ENSRNOG00000060038 ENSRNOT00000082374 3 1 1 69 20 48814472 48815822 CAAGTCATAAACAAGCAAGGAC 58 48814424 48814443 AATTTCCCTGGATACACCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071551.2 ENSRNOG00000060625 ENSRNOT00000083631 3 1 1 83 8 121702877 121703660 GATGCCATAATCTCTGGTCTG 58 121702814 121702833 TCATTCACAATGTCACCGAG 58 Novel Rattus norvegicus 81 AABR07060560.2 ENSRNOG00000053029 ENSRNOT00000091322 2 1 1 83 4 80484384 80486381 CAACTAATCGGGAGGAGCT 59 80486428 80486446 TTTCCCATCACAGAGGAGC 59 Novel Rattus norvegicus 81 AABR07060560.3 ENSRNOG00000056372 ENSRNOT00000085281 3 1 1 80 4 80674812 80674830 GTTCTCAGCATTTGCAAGG 58 80674873 80676773 TTTGGTAAACAGAAGAGCCA 57 Novel Rattus norvegicus 81 AABR07043883.1 ENSRNOG00000054393 ENSRNOT00000085347 3 1 1 80 19 45850156 45850565 CAGAAATAAGAAACGGAAGCAC 58 45850097 45850115 CAACATCACAGAGGAGCTG 58 Novel Rattus norvegicus 81 AABR07071620.1 ENSRNOG00000061859 ENSRNOT00000086230 3 1 1 91 8 124506368 124506386 ATTTGCTTCCGGGACTCTC 60 124506438 124526672 ACTTTCTTTATTCTGGCTGAGC 59 Novel Rattus norvegicus 81 AABR07071697.1 ENSRNOG00000059784 ENSRNOT00000090101 3 1 1 130 8 126966254 126966272 TCCTTATGGGAAGTCGTGG 59 126966366 126969202 CATTGGTGCCCACATAGAC 59 Novel Rattus norvegicus 81 AABR07071742.2 ENSRNOG00000055201 ENSRNOT00000091761 1 1 1 90 8 128721259 128729933 CATCTGTGGAGAACCTGGA 59 128729984 128730005 GCGACTAACAAATTGTTTGTCC 59 Novel Rattus norvegicus 81 AABR07071747.1 ENSRNOG00000057660 ENSRNOT00000079586 1 1 1 60 8 129157630 129157648 CCTCTCCCGAACCTAAGTC 59 129156252 129157607 ATATCTAGTACCAGGCACCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07072664.1 ENSRNOG00000060142 ENSRNOT00000083059 3 1 1 181 19 56878624 56879778 ATCTCACAGACCGAACTGC 60 56879922 56879941 GGGTACTGCTTAGGTCAGAG 59 Novel Rattus norvegicus 81 AABR07009600.2 ENSRNOG00000056581 ENSRNOT00000091685 3 1 1 80 2 105589411 105589431 AACTGATGAGAGCTCTTTACC 58 105589472 105633741 TACTGTACATGGAAAGGCCT 59 Novel Rattus norvegicus 81 AABR07010153.1 ENSRNOG00000052110 ENSRNOT00000079112 2 1 1 60 2 126934609 126934627 GAGTCCTTCCAGACAGTGG 59 126933555 126934586 TTCTACTGCTCACTCCTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010153.1 ENSRNOG00000052110 ENSRNOT00000079112 3 1 1 60 2 126934612 126934630 GTGGAGTCCTTCCAGACAG 59 126933558 126934588 TACTGCTCACTCCTGAGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010468.1 ENSRNOG00000052002 ENSRNOT00000086872 1 1 1 89 2 136982438 136983285 TTTCCCACTTGGTGAGGTC 60 136982367 136982389 ACAGTATGCAGTTCTATGAGGAG 60 Novel Rattus norvegicus 81 AABR07010550.1 ENSRNOG00000055377 ENSRNOT00000090981 1 1 1 66 2 139942376 139945246 CACAGACATGACCAGGAGG 60 139945276 139945294 ATAATCCCTCGCTGGAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010620.1 ENSRNOG00000055580 ENSRNOT00000077309 1 1 1 104 2 144175708 144178112 ATTAACACGACAGGTGCTG 58 144175622 144175640 TACGGTTTGTACAGCTGGA 59 Novel Rattus norvegicus 81 AABR07010718.1 ENSRNOG00000058650 ENSRNOT00000090614 3 1 1 72 2 149090389 149090407 AGACATCAAGGCTGGAGAG 59 149090441 149096508 TGAATGACATCCAAACTGCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AC111231.3 ENSRNOG00000060025 ENSRNOT00000084370 3 1 1 91 2 150217708 150217727 TCTGACTATTTCCGTAGCCC 59 150215282 150217655 AGTCCTTCACAGTGATGGTG 60 Novel Rattus norvegicus 81 AABR07010763.2 ENSRNOG00000058839 ENSRNOT00000084830 3 1 1 82 2 150566197 150610638 TTCATCAGGAAGACTTTCCAC 58 150566135 150566155 GATGTTAGGATGAGGTGAGTG 58 Novel Rattus norvegicus 81 AABR07010985.1 ENSRNOG00000057008 ENSRNOT00000078751,ENSRNOT00000082918 2 2 2 110 2 156311190 156316035 CAAGAGTACTCCAAGGGCA 59 156311098 156311116 CAGGTAGGGAAGGGAAAGC 60 Novel Rattus norvegicus 81 AABR07011084.2 ENSRNOG00000060521 ENSRNOT00000078172 1 1 1 130 2 157392333 157392351 ATCTGAGCCAGTGATCGTG 60 157392445 157402613 GTCTCCAGCTTCTCCTCTG 59 Novel Rattus norvegicus 81 AABR07011545.1 ENSRNOG00000049459 ENSRNOT00000073022 1 1 1 80 2 163341510 163341528 AATGGAGTCCTTGGCTGAG 59 163321983 163341472 CTACGTCTATAATATTTCCAGGCAC 59 Novel Rattus norvegicus 81 AABR07011945.1 ENSRNOG00000056840 ENSRNOT00000084741 3 1 1 161 2 177343807 177343825 ATACCTGGAGAGTTGGCAC 59 177343231 177343684 TTCTTTGTCTCAGGAATCCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012065.1 ENSRNOG00000056112 ENSRNOT00000086755 2 1 1 116 2 184693457 184693475 TTATCGGCATCATCACCCA 59 184693058 184693377 ATGCAAGGACCTGGTAGAG 59 Novel Rattus norvegicus 81 AC098750.5 ENSRNOG00000058324 ENSRNOT00000091819 2 1 1 80 2 188600972 188601804 TGTCCTCTAAGATTTGGTCTG 57 188600912 188600930 GACAGGATAGAGGAACGGA 58 Novel Rattus norvegicus 81 AABR07012613.1 ENSRNOG00000058608 ENSRNOT00000086269 3 1 1 87 2 199439405 199439423 GCTCAGAGTCTTTCCTGGG 60 199433087 199439354 GTGGGTGACTGGAGAAGAG 59 Novel Rattus norvegicus 81 AABR07014306.1 ENSRNOG00000051571 ENSRNOT00000084014 3 1 1 81 14 8903634 8912491 CCATTCGAGGATCTTCAACG 59 8912533 8912553 AGACATTGTGCTTTGTAAGCC 60 Novel Rattus norvegicus 81 AABR07013314.1 ENSRNOG00000060298 ENSRNOT00000091790 3 1 1 83 2 232988642 232988661 AACTTTGAACTAGCAAGGCA 58 232988706 232993623 TTCCAGCAAATCTTTCTCCA 58 Novel Rattus norvegicus 81 AABR07013410.1 ENSRNOG00000052248 ENSRNOT00000080258 3 1 1 87 2 236007074 236007092 AAAGCTGACTTGCCAACAC 59 236011056 236011075 TTTCTTCTTGGTGCTGTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013477.2 ENSRNOG00000059314 ENSRNOT00000091629 3 1 1 80 2 239058185 239058205 ACAGATGAGTCGAAACAACAG 59 239058243 239061823 CCAAGTAGAGAATCTTCTGAAGG 58 Novel Rattus norvegicus 81 AABR07013488.2 ENSRNOG00000057646 ENSRNOT00000080711 1 1 1 87 2 239579753 239579773 CACTTAAGGTTTCTGAACCGA 58 239579822 239598228 TCTCATTCCTCCTCACCTG 58 Novel Rattus norvegicus 81 AABR07013676.1 ENSRNOG00000053087 ENSRNOT00000078313 1 1 1 61 2 249514674 249514692 AGAGAATTAGCTGCACGGA 59 249514717 249515168 AATTTCAGCCTCCATCTGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07013676.2 ENSRNOG00000057293 ENSRNOT00000087350 1 1 1 96 2 249528199 249529897 GTAATACTAACTACTGATGGCGTC 59 249528126 249528144 CAAACTGCTCCAACTTGGG 59 Novel Rattus norvegicus 81 AABR07013701.1 ENSRNOG00000057834 ENSRNOT00000090803 2 1 1 81 2 251535215 251535233 CCTCTGCTGAGAGCTACAG 59 251535275 251606330 TGTAGTGGAATTGTCTTCTCCA 59 Novel Rattus norvegicus 81 AABR07013747.1 ENSRNOG00000051582 ENSRNOT00000077676 3 1 1 64 2 254280120 254285564 TGTGATGCAAGGTATGTTGTG 59 254285590 254285608 CTTTGATGACCCAAGGACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07013762.1 ENSRNOG00000057395 ENSRNOT00000082852 2 1 1 80 2 255038593 255076477 GACCCAAGATTTCCTGATAGAC 58 255076515 255076536 AATCTTAGGGACATCAACTGTC 58 Novel Rattus norvegicus 81 AABR07013764.2 ENSRNOG00000060722 ENSRNOT00000089348 1 1 1 67 2 255464419 255466063 CAGCTCTTGCTTTACAATGTG 58 255464372 255464391 CCTCTTGAGACTTGACTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 Mroh4 ENSRNOG00000005382 ENSRNOT00000076775 3 1 4 89 7 115870359 115873154 GAAACACTCCAGGCTATGC 59 115870288 115870306 CTGGGCAATGGATGATTGG 59 Novel Rattus norvegicus 81 Rn60_7_1158.3 ENSRNOG00000051088 ENSRNOT00000076749 2 1 2 107 7 115830355 115830373 ACTCACTACGGACTCTCCT 59 115828725 115829948 CTGAGTCACCACTGTCCTC 59 Novel Rattus norvegicus 81 AABR07027511.1 ENSRNOG00000058793 ENSRNOT00000090457 1 1 1 80 17 34940783 34941457 ATATTTGAAGGTGCCCTTGG 58 34940722 34940741 CACATGAACAGCAACAACAG 58 Novel Rattus norvegicus 81 AABR07012295.1 ENSRNOG00000052006 ENSRNOT00000071718 3 1 1 271 2 192343229 192343247 TGTGTCTTCCTGCTGTAGC 60 192342975 192342994 CAACAGCAATCTCCAGACTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014242.1 ENSRNOG00000051404 ENSRNOT00000057117 1 1 1 60 14 5868844 5868863 CTAAGTATCCAGAAGCACCC 58 5868803 5868821 ACGCCACTCATATTGACTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC117889.1 ENSRNOG00000053079 ENSRNOT00000089404 1 1 1 80 10 986871 988592 TCGACAAGACAATCTGCCA 59 988636 988654 TCAAATCCTGCACCAAGGA 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000055267 ENSRNOT00000088460 3 1 1 60 4 62765761 62765779 AAGAGGGAACTGCATTCTG 57 62765801 62765821 AGGTAATTCCTACATCTGGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052974 ENSRNOT00000080430 2 1 1 60 4 174975415 174975435 CAAACAAGCTCTCAAGAAACC 58 174975375 174975398 TTATGACTGCCTAATAGTAGCCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052974 ENSRNOT00000080430 3 1 1 60 4 174975414 174975434 AAACAAGCTCTCAAGAAACCC 59 174975374 174975396 GTTATGACTGCCTAATAGTAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039648.1 ENSRNOG00000002789 ENSRNOT00000003730 3 1 1 60 X 81817032 81817053 AACATGAAGATCAAGTCCTTGG 59 81816993 81817011 GAGACTCCTTAATGGGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0558.2 ENSRNOG00000051347 ENSRNOT00000076984 3 1 1 138 13 50692033 50696562 ACTGCCTCTTTCCAAGGAC 60 50696664 50715175 GTTTCACTCTCCAACGCAG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000056998 ENSRNOT00000082325 1 1 1 60 3 58994460 58994478 GCGAAAGTGATCATTCACC 57 58994501 58994520 CTAGCCAATCCAATTCTCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061309 ENSRNOT00000085521 3 1 1 60 17 63251802 63251820 GAATGACCCTTACTGTCCC 57 63251843 63251862 CATCTTTGTCAACTGAGCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_6_1241.2 ENSRNOG00000003908 ENSRNOT00000057756 1 1 5 80 6 115018651 115018675 GCTAAGAATACAGAGTCTGAAGG 59 115001663 115001682 ATCCTCCTTAAGTGCTCCTC 59 Novel Rattus norvegicus 81 AC122603.1 ENSRNOG00000032095 ENSRNOT00000051003 1 1 1 60 16 19954694 19954712 GCGACTTCAACAGCAACTC 60 19954740 19954758 GTCATTGAGAGCAATGCCA 59 Novel DesignNoJunction Rattus norvegicus 81 LOC100910057 ENSRNOG00000047369 ENSRNOT00000085330,ENSRNOT00000061864 2 2 3 80 9 4093085 4093105 GTCAGATTCAGACCTTCAAGG 59 4093145 4095012 CTTGAATCCATGTTGTCCCTG 59 Novel Rattus norvegicus 81 AABR07050543.1 ENSRNOG00000052811 ENSRNOT00000085520 2 1 1 65 5 168845243 168845263 AGCTGAAATCACCATCTTTGG 59 168845330 168845348 ATAGCTCTTTGGACTCCGT 58 Novel DesignNoJunction Rattus norvegicus 81 SNORD115 ENSRNOG00000059788 ENSRNOT00000089413 1 1 1 60 1 116746403 116746424 GACAACAGAAAGTCAAGAACAG 58 116746364 116746383 CAGCGTAATCCTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059639.1 ENSRNOG00000052925 ENSRNOT00000089564,ENSRNOT00000087619 3 2 2 80 4 29561562 29561580 TCTAGAAAGAACCCTGCCC 59 29561621 29562211 GTCAATCCAGTAGTAATCGCTC 59 Novel Rattus norvegicus 81 ENSRNOG00000056694 ENSRNOT00000081054 3 1 1 60 1 37989887 37989908 ATGCTAGAGAATTACAGCAACC 59 37988410 37988428 CGAGATATGGCTTAGCGGA 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_13_0803.1 ENSRNOG00000051311 ENSRNOT00000076718 1 1 1 80 13 75366066 75366906 CACTTCTTGATCTAGGAAGGTC 58 75366944 75366965 AAGTGAAGTCTTCTTCACTGTC 58 Novel Rattus norvegicus 81 Dmrtc1b ENSRNOG00000022286 ENSRNOT00000076843,ENSRNOT00000029245 3 2 3 82 X 73665294 73665313 TCCTCCTAACTTTGCCTCTC 59 73659835 73665249 CATCAGAACCTTGTGGTCC 58 Novel Rattus norvegicus 81 RGD1302996 ENSRNOG00000000812 ENSRNOT00000082425 1 1 3 60 20 3367495 3367513 CCCTGATTTGGCTGTAGAC 58 3367536 3367555 TGCACACGGACATAATAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058070 ENSRNOT00000077621 1 1 1 60 2 26129600 26129618 GTTGATCTGGCAGACAGGT 60 26129558 26129578 CAGCATTGAGATGAATGGAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058070 ENSRNOT00000077621 3 1 1 61 2 26129600 26129618 GTTGATCTGGCAGACAGGT 60 26129557 26129577 ACAGCATTGAGATGAATGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019888.1 ENSRNOG00000053960 ENSRNOT00000090887 1 1 1 60 13 6055528 6055549 ATCCATCATGTTCTAGTCACAC 58 6055489 6055510 CTAGCATCTCTACTTCTTCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.10 ENSRNOG00000049262 ENSRNOT00000072539 2 1 1 60 1 121225513 121225531 TGATCAGTCAGGCTACTGG 59 121225471 121225489 GGCTTTGGTTATACCCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362640 ENSRNOG00000003201 ENSRNOT00000004278 2 1 2 82 X 72075658 72075678 AAGGTGAATGACACCATTCAG 59 72074839 72075615 ATACACAGGTTCCCAGTGTC 60 Novel Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000051675 ENSRNOT00000083238 3 1 1 60 3 38777644 38777664 CAAGGCTTTCCCTTAGTTGAG 59 38777685 38777704 TCTGTCTAGTTGTGAAGCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC113635.1 ENSRNOG00000051467 ENSRNOT00000086881 1 1 1 61 2 210002111 210002129 GAAGAGCATCGCTTCTCAG 58 210002068 210002092 CTGCTCTTCTGTTATCATACTACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057202 ENSRNOT00000082280 3 1 1 60 5 71444183 71444202 CTGTGTTACTTGGGTGTCCT 60 71444222 71444243 GAGCACAGACATAGTCTTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911918 ENSRNOG00000047261 ENSRNOT00000076222,ENSRNOT00000071364 2 2 2 90 18 14776135 14857565 TGCCTGGATGTTCAAATTGG 59 14857618 14857636 CATGCGATGATGTCATGCC 60 Novel Rattus norvegicus 81 LOC100911918 ENSRNOG00000047261 ENSRNOT00000076222,ENSRNOT00000071364 3 2 2 90 18 14776136 14857566 GCCTGGATGTTCAAATTGGG 60 14857619 14857637 CCATGCGATGATGTCATGC 60 Novel Rattus norvegicus 81 ENSRNOG00000056537 ENSRNOT00000090885 1 1 2 80 13 96099272 96101535 GTTTCCTGATTCAAGTATCTACCTG 59 96101568 96101591 CAGAAATAGCTCAAATGACTGAGG 60 Novel Rattus norvegicus 81 AABR07017868.4 ENSRNOG00000056892 ENSRNOT00000080233 2 1 1 65 15 31951123 31951141 TCCTCTGGCTTCAACTGAG 59 31951362 31951380 TGAGTGATTCTGGGCTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013802.1 ENSRNOG00000058222 ENSRNOT00000081427 2 1 1 103 2 257462433 257462452 TTGACAAGGCCAACAAACAC 60 257462519 257462537 AGTTCCAGAAGCTAGCAGC 60 Novel DesignNoJunction Rattus norvegicus 81 Catip ENSRNOG00000037835 ENSRNOT00000080528 2 1 4 83 9 81645200 81645218 AGTACAAAGACGACCTGGG 59 81645263 81645679 GTTGAGGTAGCTTGTCTAGGA 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000051646 ENSRNOT00000084279 2 1 1 61 15 39604341 39604363 GGAACGATACAGAGAAGATTAGC 59 39604302 39604321 CAGTTAGGTACTCTGCACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045491 ENSRNOT00000070758 3 1 1 60 1 47042012 47042030 TGCATATGGTCTCATCTGC 57 47042051 47042072 ATCCACATACTAATCAGACCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snopsi28S-3327 ENSRNOG00000056898 ENSRNOT00000080118 3 1 1 66 5 150490199 150490217 CTTATCGAAGCTGCAGCTG 59 150490247 150490265 AAATTGTTTCTCTGGGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053320 ENSRNOT00000082311 1 1 1 60 13 536881 536902 ATACAGAGAAGATTAGCATGGC 58 536922 536941 GGAACGCTTCACAAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142178.3 ENSRNOG00000053650 ENSRNOT00000083003 1 1 1 60 11 36588718 36588737 ACGACTTATGGTATTGCGAG 58 36588755 36588778 CTCATAAAGAGTAACAGAACGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062183.3 ENSRNOG00000058993 ENSRNOT00000078267,ENSRNOT00000085719 3 2 2 80 4 164047281 164047299 GGATTGGATGTCAACAAGC 57 164042718 164047239 GAAGGAACTTCAGTTCATCCT 58 Novel Rattus norvegicus 81 AABR07069944.1 ENSRNOG00000058997 ENSRNOT00000077101 3 1 1 63 8 42839614 42839632 TTCCTTCTGTTCCTGAGCA 59 42839566 42839584 AGATGAGCAGGATCATGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AC096473.2 ENSRNOG00000053543 ENSRNOT00000084369 2 1 1 64 7 120138213 120138234 GGGAAGATACTCTATCTGTCCC 59 120138168 120138188 CTTCCTCTCCTGGAGATACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07007744.2 ENSRNOG00000060714 ENSRNOT00000088791 3 1 1 77 2 26870118 26870136 CCACCTGTGGTCTTAAGGG 60 26869963 26869982 CTTGTTACCACCTCCAGGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07025316.1 ENSRNOG00000055486 ENSRNOT00000079157 3 1 2 96 16 33374195 33374570 CCCTAAGAGAACACAAATTGGA 58 33374627 33374646 ACTCTGAGGTAGTGTCTGTC 58 Novel Rattus norvegicus 81 AC132752.2 ENSRNOG00000060837 ENSRNOT00000091125 1 1 1 69 20 47733552 47733570 CATCCAATGACACCAGCTG 59 47733501 47733522 GAAGCTGTGTTATTTGCTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000145.1 ENSRNOG00000040316 ENSRNOT00000087543,ENSRNOT00000062051 3 2 2 80 1 1441917 1441937 TGCAATCTTTCTCTGAGTCTG 58 1440630 1441878 AAAGGAGTGTACATCTTCTAGC 58 Novel Rattus norvegicus 81 AABR07047044.3 ENSRNOG00000061815 ENSRNOT00000086850 2 1 1 60 5 17123487 17123507 TAGATCTTGCTTACATCGCAG 58 17113843 17113862 CTGTTGGAATTCAACAACCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000410.1 ENSRNOG00000059898 ENSRNOT00000086689 1 1 2 115 1 11984268 11984287 TCACCAAAGACACTTCTGAC 58 11983184 11984191 CTTTCATGCACTTCATCCAC 58 Novel Rattus norvegicus 81 AABR07030259.1 ENSRNOG00000059351 ENSRNOT00000081619 2 1 1 83 10 78340591 78340612 TGATGAAGATAACCAATAGCCC 58 78339930 78339948 GAGTAATGCACTGTGGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AC133613.1 ENSRNOG00000057641 ENSRNOT00000080373 2 1 1 116 14 82289301 82289319 TACCCTGTCTGGAGTCCTC 60 82288645 82288663 GATACCTGAGGTCTTGGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030473.1 ENSRNOG00000052682 ENSRNOT00000091161 2 1 2 82 10 88568242 88577770 CCTGTTCAGAATCATCGAAGC 60 88568180 88568198 GTTCAGCTGGATGTTGCAG 60 Novel Rattus norvegicus 81 AABR07061807.1 ENSRNOG00000052299 ENSRNOT00000080698 3 1 1 60 4 146296367 146296386 GTCACAACCATGAGAAGACC 59 146294967 146294985 AGCACTTACTGTTGATGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07016731.2 ENSRNOG00000060804 ENSRNOT00000080552 3 1 1 75 14 112997162 112997183 GGTGGATGTCATGTTACAATGG 60 112969508 112969528 GTCATCGTGCACATCTTTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07018197.1 ENSRNOG00000056292 ENSRNOT00000085957,ENSRNOT00000089342 3 2 2 81 15 46495172 46495190 CATCTTGGGAAAGGCAACG 60 46495231 46502322 GTCATCTTCTTTGAATCTCCTGG 59 Novel Rattus norvegicus 81 AABR07019388.1 ENSRNOG00000058686 ENSRNOT00000087126 1 1 1 103 15 103583562 103583580 ATGTTGGACATACTCGGCT 59 103576093 103576112 GGCGAGTTCTGTGTATAGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07003051.1 ENSRNOG00000058448 ENSRNOT00000089360 2 1 1 98 1 95240941 95240959 AACAATGACAACAGCAGCA 59 95241709 95241727 CTCAGCTCCAATCTTGGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07003167.2 ENSRNOG00000058280 ENSRNOT00000077852 3 1 1 75 1 97089813 97089834 TCAATAAGGGATCACAAGACTG 58 97084667 97084685 TCAAGTTTCGAGCCTCCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07033697.1 ENSRNOG00000052451 ENSRNOT00000078896 3 1 1 76 11 35609379 35609397 AGGAAAGGAACAAGTGGAG 57 35611092 35611111 TAGTCAGTGTTTGCTCTTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07034310.1 ENSRNOG00000058720 ENSRNOT00000084711 1 1 1 67 11 64195367 64195385 CTACCGAAGGACCATTGTG 58 64225617 64225635 CTTACTGTGCATGCTTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07034679.1 ENSRNOG00000052500 ENSRNOT00000090340 2 1 1 62 11 83801320 83801338 CTCTGGAGCCAAATCATGG 58 83814236 83814255 AGTTCCATCTCTGAACTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AC135645.2 ENSRNOG00000059886 ENSRNOT00000079233 1 1 1 60 3 80966036 80966055 CACCATGGCCATTATTACCT 58 80968160 80968178 AGTCCACAGACATGTGACG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035065.1 ENSRNOG00000061479 ENSRNOT00000086043 2 1 2 84 12 3807802 3807929 TCATGAAGGCATACTCCCTG 59 3807976 3807994 ACCTGCATGAGGAGTAAGC 60 Novel Rattus norvegicus 81 AABR07004269.2 ENSRNOG00000051426 ENSRNOT00000089401 3 1 1 102 1 134951711 134951731 ACTGAAGTTTCCAATCTGGAG 58 134951458 134951477 TAAACAAGTGCCTGGAAGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07067871.2 ENSRNOG00000059971 ENSRNOT00000087878 2 1 1 60 9 69756806 69756825 TTATCGGTTACTTCTGCCTC 57 69770262 69770280 CGAGTGTTCAAAGCTTCAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07068535.1 ENSRNOG00000057846 ENSRNOT00000078154 2 1 1 61 9 106784506 106784527 TCAGAATTCATTATGGCCACAC 59 106734734 106734752 ACCACCTCCTTGAAGACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026938.1 ENSRNOG00000061242 ENSRNOT00000088545 2 1 1 60 17 5877411 5877431 AACACTATCTGTGAGATCTGC 58 5889672 5889691 TATTCAGACAACGCAACACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042731.1 ENSRNOG00000059356 ENSRNOT00000077150 1 1 1 64 19 5851829 5851847 AGGAGGAGTCTCCTGTGAG 60 5852488 5852510 CCATGTAATTTGTCTGTACCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07042840.1 ENSRNOG00000061917 ENSRNOT00000081499 3 1 2 60 19 11671468 11671486 CAAGACTGCGTTTGATGGA 59 11686700 11686718 GCTAGCCCTTGAGAGTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043748.2 ENSRNOG00000055745 ENSRNOT00000092177,ENSRNOT00000085034 2 2 2 80 19 38365659 38365974 TCATCGTTCTGAATGTTACAGC 59 38365600 38365621 CCAGTAGTTCATTCCTCAAGGT 60 Novel Rattus norvegicus 81 AABR07029172.2 ENSRNOG00000055362 ENSRNOT00000079369 1 1 1 68 10 11306707 11306725 GAGAGCAGCCATGAAACAG 59 11308050 11308068 GATTTCAGGAAGGAGGCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058210.1 ENSRNOG00000053215 ENSRNOT00000083030 3 1 1 60 7 105102040 105102060 ATGTTAGTCATCTTCTGAGCC 58 105122127 105122146 AGATGGTTCTTAGCTCAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AC105470.1 ENSRNOG00000056265 ENSRNOT00000090459 3 1 2 95 10 35053547 35053565 CAGAACCATACCTCAGCCC 60 35053221 35053488 AGCATCAGTACTGAGCCTG 59 Novel Rattus norvegicus 81 AABR07058985.2 ENSRNOG00000059271 ENSRNOT00000082747,ENSRNOT00000086366 3 2 2 80 4 108023 108302 GAGGTTTGTGTTAAGGCCTC 59 108345 108363 TTCAGCTCTCCAGTGACTG 59 Novel Rattus norvegicus 81 AABR07070801.1 ENSRNOG00000061011 ENSRNOT00000085513 1 1 1 62 8 84893249 84893267 AGAGCCCTATGAAAGGAGC 59 84886665 84886683 CCTCTTCCTCTTCCTCCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028784.1 ENSRNOG00000055730 ENSRNOT00000091957 1 1 1 60 17 86214922 86214940 ACAATGTGAGGCACATCTG 58 86214790 86214808 TTTCAGTTTCTGGAGACCG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07060151.1 ENSRNOG00000053863 ENSRNOT00000083274 1 1 1 60 4 59202819 59202840 GCAAACTTTACTACTGCTGAGG 60 59196383 59196401 AAACTCTAGCACGTTGCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07060235.1 ENSRNOG00000052478 ENSRNOT00000089153 1 1 1 116 4 63698700 63698718 TTTAACACTGAGCCACACC 58 63631493 63631511 TAGAAGGGAGGTAGGTCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058685.1 ENSRNOG00000055474 ENSRNOT00000084361 3 1 2 84 7 131431131 131431149 AAGTCTGCTGAGACATGGG 59 131397411 131431084 AGAACTTCATGGGAGGTCTC 59 Novel Rattus norvegicus 81 AABR07071779.1 ENSRNOG00000053916 ENSRNOT00000089287 1 1 1 60 8 130967903 130967923 TCACTTTCTGCACTTGAACTG 59 130967655 130967674 TAAAGTACCTGACAGCAGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058788.3 ENSRNOG00000057179 ENSRNOT00000085055 1 1 1 82 7 137542325 137542344 GGAGATGGTAATCCACACTG 58 137543424 137543442 GAAAGACGAGCCAACAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010353.1 ENSRNOG00000054119 ENSRNOT00000085595 1 1 1 60 2 133028532 133028550 CTGCAGGAAAGTCCTACAG 58 133026417 133026440 TCATCCTCTACCACTTATATGTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010763.1 ENSRNOG00000055189 ENSRNOT00000081158 3 1 1 68 2 150686754 150686774 CAACCTCCATGGTCTAATCTG 58 150689276 150689294 TGGAACGTCCCTATCATGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013676.1 ENSRNOG00000053087 ENSRNOT00000078313 1 1 1 63 2 249514674 249514692 AGAGAATTAGCTGCACGGA 59 249515151 249515170 TCAATTTCAGCCTCCATCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07013676.1 ENSRNOG00000053087 ENSRNOT00000078313 2 1 1 64 2 249514673 249514692 AAGAGAATTAGCTGCACGGA 60 249515151 249515170 TCAATTTCAGCCTCCATCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07013764.2 ENSRNOG00000060722 ENSRNOT00000089348 3 1 1 76 2 255466053 255466072 AAAGGTCTACAGCTCTTGCT 59 255464372 255464391 CCTCTTGAGACTTGACTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 Mt-co1 ENSRNOG00000034234 ENSRNOT00000050156 3 1 1 60 MT 5882 5900 CCGTACTAATTACAGCCGT 57 5921 5942 GTGATACCTGCTGCTAATACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prkaa1 ENSRNOG00000012799 ENSRNOT00000017626 2 1 1 80 2 54873638 54875505 CCTCATATAATCAAACTGTACCAGG 59 54875540 54875561 CTCTCCTCCTGAGACATATTCC 59 NA Rattus norvegicus 81 Mir124-2 ENSRNOG00000035499 ENSRNOT00000053622 3 1 1 66 2 102311607 102311626 AGATCAGAGACTCTGCTCTC 58 102311654 102311673 GCGTGCCTTAATTGTATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Anxa9 ENSRNOG00000021134 ENSRNOT00000028693 3 1 1 80 2 196474197 196474215 CCAAGAACTGGAGGATGCT 59 196474046 196474154 CTCATCATGGAAGCTAGGCT 59 NA Rattus norvegicus 81 AC115371.1 ENSRNOG00000048644 ENSRNOT00000065210 3 1 1 120 15 33610920 33611433 CTATTCATCAGGAAGCCGC 59 33611517 33611535 GAAGGACGAGGAGATGGAG 59 NA Rattus norvegicus 81 LOC680353 ENSRNOG00000033484 ENSRNOT00000048963 2 1 1 60 X 74824533 74824551 GGACTTTCTACTCACAGCC 58 74824573 74824593 CGTGTTCTTCTTGATCTTGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC365839 ENSRNOG00000016146 ENSRNOT00000021604 2 1 1 80 2 186631006 186631025 AGGAATTCAGAACCTTGGCT 59 186631063 186631204 GTAAGCCTATGATAGTTGTCACTG 59 NA Rattus norvegicus 81 Mcpt2 ENSRNOG00000020625 ENSRNOT00000027931 3 1 3 80 15 34862923 34862941 TAAAGGACAGCTGTGGTGG 60 34862983 34863500 CTGTGATTTCTCTTCCTCTGC 59 NA Rattus norvegicus 81 Olr1670 ENSRNOG00000049000 ENSRNOT00000044420 2 1 1 60 20 386716 386737 TCCAGCTTTATTTCTTCCACAC 59 386758 386776 GACATAAGAGCCAGGAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam198b ENSRNOG00000010183 ENSRNOT00000013524,ENSRNOT00000088686 1 2 2 80 2 178681570 178699066 ATTAGAGTTCATCCAAGATGGC 58 178699106 178699125 TGGCTAACATTGCTTGAAGG 59 NA Rattus norvegicus 81 Lst1 ENSRNOG00000000855 ENSRNOT00000065940 1 1 1 80 20 5178019 5178345 GCTACTAGAGAAACAGTGTTACC 59 5177961 5177980 AACAGGATGATGACAAGCAG 58 NA Rattus norvegicus 81 Usp19 ENSRNOG00000049531 ENSRNOT00000085038,ENSRNOT00000074772 2 2 2 80 8 117282501 117282748 GATCCTAGGAGAGTGTCCA 57 117282934 117282953 CTCATCTGAACTCTGTCTCC 57 NA Rattus norvegicus 81 Ttc3 ENSRNOG00000001682 ENSRNOT00000065600 3 1 1 80 11 34612714 34612736 GTATCTGTACTCCTGACTTTACC 58 34612776 34613072 TATATTGCATACCCACGCC 58 NA Rattus norvegicus 81 Gzmb ENSRNOG00000045973 ENSRNOT00000032601 1 1 2 80 15 36356083 36470693 GCTGTTAAAGCTGAAGAGTAAGG 60 36356025 36356046 TTCACTTTGAAGTTGCTTCTGG 60 NA Rattus norvegicus 81 Vcam1 ENSRNOG00000014333 ENSRNOT00000078806,ENSRNOT00000077972,ENSRNOT00000019377 3 3 3 80 2 219078724 219081997 TGGAGGTCTACTCATTCCCT 59 219078663 219078682 AGTTGACAGTGACAGGTCTC 59 NA Rattus norvegicus 81 Mpl ENSRNOG00000028377 ENSRNOT00000034762 2 1 1 80 5 137269743 137270084 CCTAAGTCCTTCTAAGGCCA 59 137269682 137269703 GGAGACTTAGGTAGGATTTCCA 59 NA Rattus norvegicus 81 Fam132a ENSRNOG00000019864 ENSRNOT00000027055 2 1 1 96 5 173393733 173394230 GATTCCAGGCTCCTACTACC 59 173394289 173394307 TGGAAGATGGCAGAGACTG 59 NA Rattus norvegicus 81 Tm9sf1 ENSRNOG00000019710 ENSRNOT00000026734 3 1 1 81 15 34319865 34319884 CTCCATGTCGTGGTCTACTC 60 34319549 34319821 GCCATGACAATGATGCCAG 60 NA Rattus norvegicus 81 Pbk ENSRNOG00000015308 ENSRNOT00000064306 2 1 1 82 15 42495644 42495662 CAAAGACAGTGGAAGTCCT 57 42495707 42496851 GATGCAGATACTTTAGCCCT 57 NA Rattus norvegicus 81 Pbk ENSRNOG00000015308 ENSRNOT00000064306 3 1 1 82 15 42495643 42495661 ACAAAGACAGTGGAAGTCC 57 42495706 42496850 ATGCAGATACTTTAGCCCTC 57 NA Rattus norvegicus 81 Lhfpl5 ENSRNOG00000022283 ENSRNOT00000036999 1 1 1 81 20 5819732 5819750 TTCTTGGCTTTCGTGTTGG 59 5819795 5822840 TTCAGACTTCCTCGTTCCC 59 NA Rattus norvegicus 81 Adrbk1 ENSRNOG00000018985 ENSRNOT00000025847 2 1 1 80 1 219537925 219538024 CTTCTTACAGAAGTACCCTCC 57 219537865 219537883 AAGGAGCCAATGTCAAAGG 58 NA Rattus norvegicus 81 Rup2 ENSRNOG00000045799 ENSRNOT00000042860 3 1 1 82 8 41658686 41659160 GTAGTAACCACTCGAGATGGA 59 41659204 41659222 CTTCCATGCTCAACAGTCG 59 NA Rattus norvegicus 81 Brpf3 ENSRNOG00000028641 ENSRNOT00000042143 2 1 1 81 20 6064316 6064619 TCAGTGAGGTTCCAGATTACC 59 6064662 6064680 AGGTGAGATTCCAGCTTCC 59 NA Rattus norvegicus 81 Gpr143 ENSRNOG00000003543 ENSRNOT00000004758 3 1 1 80 X 23677444 23680115 TTCTGTGTCCAGGTGTGAG 59 23680159 23680177 AGGACAAGCATAAGTGGCA 59 NA Rattus norvegicus 81 Pacsin1 ENSRNOG00000054603 ENSRNOT00000090820 3 1 1 80 20 7282816 7282950 AACAGCAGAAGAAAGTGGC 59 7283009 7283029 GCACCTTCTCATACTTCTCCT 59 NA Rattus norvegicus 81 Olr202 ENSRNOG00000025819 ENSRNOT00000035798 1 1 1 60 1 170185559 170185579 GAGTGAAGACTAAGCAGATCC 58 170185519 170185540 TGAGTCTTAATGTCCAAGAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zscan2 ENSRNOG00000022164 ENSRNOT00000034267 3 1 1 125 1 142679828 142679846 CTGAGGTGAATCCAGAGGG 59 142679934 142682111 AACAAGAAACACTGCCTCTC 59 NA InUTR Rattus norvegicus 81 Olr74 ENSRNOG00000015689 ENSRNOT00000021006 3 1 1 60 1 168197444 168197465 AGAGTTAATCGTGGATATGGAC 58 168197483 168197504 CAATTATGTCAAAGCCAACCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kbtbd11 ENSRNOG00000012333 ENSRNOT00000016420 3 1 1 68 16 79698553 79698573 TGGATGGTACCATCTACTGTG 59 79698505 79698523 CCTCAGTGTCCTGAGAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mycs ENSRNOG00000003085 ENSRNOT00000004118 2 1 1 60 X 17824734 17824753 AGTACATCCACACTTTGCAG 58 17824774 17824794 TACAGTTTCTCCCTTTCCACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mto1 ENSRNOG00000037659 ENSRNOT00000057138 1 1 1 80 8 85809686 85809704 CTAGTTCTTGCAGAGCCAG 58 85809747 85812591 CATTGTACTTCCATCAGCCA 58 NA Rattus norvegicus 81 Olr214 ENSRNOG00000050279 ENSRNOT00000072749 2 1 1 60 1 170864617 170864635 ATTGTGGTTGGGATGTGGT 60 170864659 170864677 GGAATTGACTGGGAAGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Thbs1 ENSRNOG00000045829 ENSRNOT00000083351,ENSRNOT00000070912 1 2 2 80 3 109863512 109863533 AGAATGTGAGGTTTGTCTTTGG 59 109863573 109863826 GAAGGACGTTGGTAGAACTG 58 NA Rattus norvegicus 81 Fdps ENSRNOG00000043377 ENSRNOT00000033917,ENSRNOT00000080185,ENSRNOT00000065065 1 3 3 80 2 188409795 188411916 GGATCAAAGAGGTCCTGGAG 60 188409734 188409753 GTTCCTGGAAGGTCTGTACC 60 NA Rattus norvegicus 81 H2afx ENSRNOG00000010386 ENSRNOT00000059715 1 1 1 67 8 48665862 48665880 GTGCTCGAGTACCTCACTG 60 48665911 48665929 GTCTTCTTGTTGTCCCGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr186 ENSRNOG00000049981 ENSRNOT00000050034 1 1 1 60 1 169919809 169919827 GTACAGCATGATCCTCACC 58 169919849 169919869 CCTGACTATGATGACTACACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asb14 ENSRNOG00000013346 ENSRNOT00000017995 2 1 1 80 16 2546790 2549194 CCTCTTCTTACAGCTGTTCTG 59 2549236 2549254 CCGAAGATTGACATTCGCT 58 NA Rattus norvegicus 81 Asb14 ENSRNOG00000013346 ENSRNOT00000017995 3 1 1 80 16 2549417 2552875 CTACTACTGCAGAAAGGAGCT 59 2552917 2552935 CCCTCCTCTAACAGCTTCG 60 NA Rattus norvegicus 81 Ctag2 ENSRNOG00000012560 ENSRNOT00000016754 1 1 1 80 X 148422461 148422640 TTCTCACTGTTAGGTGGACC 59 148422681 148422701 CAAGTGAAAGGTGGTCTAGGA 60 NA Rattus norvegicus 81 RGD1562550 ENSRNOG00000027263 ENSRNOT00000037659 1 1 1 89 2 52362527 52362546 GCAGAAGTTCTCTTAGCTGG 58 52362598 52364842 TAAAGCGGCCTGTAAAGAG 58 NA Rattus norvegicus 81 Ccr1 ENSRNOG00000006715 ENSRNOT00000008772 2 1 1 127 8 132998201 133001928 TGGAAACACAGACTCATTGTC 59 132998094 132998114 GTCATATTCTGTGGTTGTGGG 59 NA InUTR Rattus norvegicus 81 Ppp1r12c ENSRNOG00000053828 ENSRNOT00000086122 3 1 1 81 1 72923919 72923937 GAGGAGTCTGAGTCTCAGC 59 72923980 72924085 CTGTCAAAGTTACACCCTGTG 59 NA Rattus norvegicus 81 Mogat2 ENSRNOG00000027228 ENSRNOT00000035774 2 1 1 99 1 164186156 164196136 CTGTCTCTTTGGTCAAGACAG 59 164186077 164186095 AGGTTAAGAAAGGCTCCGG 59 NA Rattus norvegicus 81 Arl15 ENSRNOG00000011105 ENSRNOT00000014761 3 1 2 85 2 45813981 45858986 AGAACTTGGAGGAGCTGAC 59 45859031 45859053 CGCTGTCTAATACGAATATGACC 59 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000089371,ENSRNOT00000041367 2 2 6 125 1 76558943 76572735 CTCATGAGGAAAGGCACTG 58 76558836 76558855 TTATTCCCATGGGAACATCC 57 NA Rattus norvegicus 81 Olr1337 ENSRNOG00000058978 ENSRNOT00000079702 3 1 1 60 8 43873560 43873579 CAATAGTCACTCCGATGCTC 58 43873600 43873620 CGCTTGACTTCCTTGTTTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pex11a ENSRNOG00000015003 ENSRNOT00000020229 2 1 1 82 1 141478604 141478622 GTCTAAGGCTGGCAAAGAG 58 141476161 141478558 GTCTGAACCATTTACGGCC 59 NA Rattus norvegicus 81 Olr1303 ENSRNOG00000046665 ENSRNOT00000071348 2 1 1 60 8 43208611 43208632 GTTCACTTAACGTTATTGTCCC 58 43208572 43208591 GCCATGATGAAGATGTAGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpm6b ENSRNOG00000004613 ENSRNOT00000006777,ENSRNOT00000086721 1 2 2 80 X 29611140 29613828 CGGCAATACGGTATCATTCC 59 29611079 29611099 ATTGGTGTTGCAGATGTTCTC 59 NA Rattus norvegicus 81 Mir1912 ENSRNOG00000046748 ENSRNOT00000071202 2 1 1 60 X 118130664 118130682 GATGTGCTCATTGCATGGG 60 118130705 118130724 TTCTCACTGCATGTTCTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bdp1 ENSRNOG00000017864 ENSRNOT00000076991,ENSRNOT00000024023 2 2 2 81 2 30314082 30319940 ATAGACAAAGCCTTCCAGGA 59 30314020 30314041 CTTCTTCAGCAAGAACTTTCTG 58 NA Rattus norvegicus 81 Itpr3 ENSRNOG00000052795 ENSRNOT00000090925 2 1 1 80 20 5688296 5690757 AGATCCTGCAGTTCATCCTC 59 5690797 5690818 CCACAAACTCCTTCTTGAAGAC 60 NA Rattus norvegicus 81 Rn60_X_0594.3 ENSRNOG00000051140 ENSRNOT00000076295 1 1 1 60 X 58544739 58544760 AGAGGATGCTGGCTATTAAGAG 60 58544779 58544799 TTTCTCTTCTTGTCACCTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r14b ENSRNOG00000021151 ENSRNOT00000051749 3 1 1 81 1 222231183 222231201 AGAGCTGGAGATCGATGTG 59 222231245 222231492 AACTAGCAGCTCCTTGACTC 60 NA Rattus norvegicus 81 Irx2 ENSRNOG00000012742 ENSRNOT00000017019 1 1 1 80 1 33273684 33273702 TTCCAGAAGCAAGGAGGAG 59 33273340 33273641 TGTAGACTGATCCCTTCGTC 59 NA Rattus norvegicus 81 Ecsit ENSRNOG00000014128 ENSRNOT00000019115 1 1 1 80 8 23086839 23086859 TCTCTGGCTTCGTAATAAGTG 58 23086435 23086798 TCCTCTACTGTCTCTTCCTC 57 NA Rattus norvegicus 81 AABR07004678.2 ENSRNOG00000054697 ENSRNOT00000082185 2 1 1 60 1 149770623 149770643 ATCACTCTGGATCTGAAACTC 57 149770583 149770602 ACAGGGACAGATTCTTCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lztfl1 ENSRNOG00000006244 ENSRNOT00000008255,ENSRNOT00000091431 1 2 2 84 8 132780812 132780917 GAAACACAGGCTGTAAATGC 58 132780747 132780768 GTTGATTTCCTTGATCAAGCTG 58 NA Rattus norvegicus 81 Lztfl1 ENSRNOG00000006244 ENSRNOT00000008255,ENSRNOT00000091431 2 2 2 86 8 132780812 132780917 GAAACACAGGCTGTAAATGC 58 132780745 132780766 CTGTTGATTTCCTTGATCAAGC 58 NA Rattus norvegicus 81 Rn60_X_0551.2 ENSRNOG00000028179 ENSRNOT00000050661 1 1 1 60 X 54806393 54806411 TGACATCCTCAAGAAAGCC 58 54806351 54806369 TTCCTTCACCTCAAGACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912580 ENSRNOG00000049807 ENSRNOT00000074733 3 1 1 60 3 158936850 158936868 CCTCATCACTGCATTGGGA 60 158936808 158936827 AAGGTGAGAATTCAGCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mocs2 ENSRNOG00000056325 ENSRNOT00000083668,ENSRNOT00000082990 1 2 2 80 2 46983766 46983785 CAATCAGTGGAGGATAGTGC 58 46983825 46987453 ATCCACATCTTTCAAGGTATCC 58 NA Rattus norvegicus 81 Dpy19l4 ENSRNOG00000025416 ENSRNOT00000037869 1 1 1 80 5 24545527 24545547 GCAACAGATGTCTTTGTACCC 60 24544923 24545487 ACTGGTTCAATCACTTCATGG 59 NA Rattus norvegicus 81 Cyp2r1 ENSRNOG00000011367 ENSRNOT00000067609 3 1 1 82 1 184095575 184095593 ATCCTGAGCGATTTCTGGA 59 184094281 184095530 ACAGTGTCTTCTCCCTAGAG 58 NA Rattus norvegicus 81 LOC102554637 ENSRNOG00000049855 ENSRNOT00000044960 2 1 1 111 4 70743615 70744006 CTTCGGTGTCAATGATCCTG 59 70743523 70743542 AGCACAGACCATGTTATTGG 58 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000076558,ENSRNOT00000076986,ENSRNOT00000082549,ENSRNOT00000068553 1 4 6 80 17 84141180 84142917 AGCAAATCTAAGGACCTACCG 60 84141120 84141139 TAGTCACCATCTCGGAAGGA 60 NA Rattus norvegicus 81 Sh3bp2 ENSRNOG00000013747 ENSRNOT00000058111 2 1 1 80 14 81439937 81441583 GAAACTTGAAGATGCCCTGAC 60 81439877 81439895 TCAGAGAAGGTTGGCTTCC 59 NA Rattus norvegicus 81 Dus4l ENSRNOG00000008155 ENSRNOT00000084533,ENSRNOT00000068419 1 2 2 80 6 50930789 50930808 CCATAGTTGCTAACGGAGAC 58 50930087 50930746 CCATTACACCATCTGTCCC 58 NA Rattus norvegicus 81 Sc5d ENSRNOG00000008305 ENSRNOT00000011284 3 1 1 80 8 46531627 46531645 GTCATTGTTCCTGCTGGAG 59 46530074 46531584 AGATGAATCCAGCCATTTGG 58 NA Rattus norvegicus 81 Vsig10l ENSRNOG00000023411 ENSRNOT00000039446 3 1 1 85 1 98461418 98461436 TGACCTCAGTGGAAACCTC 59 98459891 98461369 GCTGATGACTTGTTGAGCC 59 NA Rattus norvegicus 81 Dnajc4 ENSRNOG00000043060 ENSRNOT00000028731 3 1 2 81 1 222246314 222246332 GGAATGAAGTGAGGCATGG 59 222245176 222246271 TAATTAGTAGGGACAGGCCTG 59 NA Rattus norvegicus 81 Hk3 ENSRNOG00000026235 ENSRNOT00000031935,ENSRNOT00000079850 2 2 2 80 17 10152160 10152329 CCGAGATTGAGAGTGACAG 57 10152373 10152391 CATCAGACGTCAGAGTCAG 57 NA Rattus norvegicus 81 Rn60_6_0026.1 ENSRNOG00000015559 ENSRNOT00000020833 3 1 1 60 6 2557164 2557182 TTGCCCATGATGTAGACCC 60 2557122 2557140 ATCTTTCGACAAAGGGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syt8 ENSRNOG00000020245 ENSRNOT00000027454 1 1 1 80 1 215605727 215605747 AAGCAACCCAAGGATAAAGAG 58 215605789 215606197 CACATCTGGTTGAACCAGG 59 NA Rattus norvegicus 81 LOC100910373 ENSRNOG00000021490 ENSRNOT00000049921 2 1 1 80 8 44559104 44559122 TCAGAAACAAACAGCCGAC 59 44549296 44559063 TGCTCCATATCTGTATCATTGG 58 NA Rattus norvegicus 81 Mageb7 ENSRNOG00000042751 ENSRNOT00000065450 1 1 1 60 X 54939472 54939491 AATGCTGAATGTTGTCACCA 58 54939431 54939451 GGCTTTCTTAAGGATCTCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Btbd1 ENSRNOG00000019529 ENSRNOT00000026595 2 1 1 80 1 143611945 143611967 GGTCATGTTCAAAGAACCTATCG 60 143611369 143611906 TGAGAATCTGGACCCTTGAG 59 NA Rattus norvegicus 81 Dmpk ENSRNOG00000015085 ENSRNOT00000020428 3 1 1 80 1 79994007 79996445 GGCCTCAAGAGACAATCAG 58 79996489 79996507 CCTTGCAAGTCTGACACAG 59 NA Rattus norvegicus 81 Dgki ENSRNOG00000026705 ENSRNOT00000033268,ENSRNOT00000079285 2 2 2 80 4 64681869 64681888 ACATCCTCTTGGTCTTCCTG 59 64660470 64681827 TTCACAGCATTCTCACTCCA 59 NA Rattus norvegicus 81 Mfsd2a ENSRNOG00000014008 ENSRNOT00000019080 3 1 1 80 5 140653001 140653019 CTTCACTGACCCTCTCGTG 60 140648077 140652958 AAGATGATCCAGGGCATGAG 60 NA Rattus norvegicus 81 Zmat2 ENSRNOG00000016016 ENSRNOT00000021516 2 1 1 80 18 29641210 29642313 GAAATGGGAGGCTACTACTG 58 29642353 29642374 CTTTCCATTAATGTGATCCAGG 57 NA Rattus norvegicus 81 Fshr ENSRNOG00000016783 ENSRNOT00000022802 2 1 1 81 6 12895669 12997610 GAACGCCATTGAACTGAGG 59 12895606 12895624 CTCCAGGTCTCCAAATCCA 59 NA Rattus norvegicus 81 Cdc42ep2 ENSRNOG00000020904 ENSRNOT00000028379 2 1 1 81 1 221273784 221281162 TCCTCAAGCTTCTCAACTCTG 60 221273723 221273743 AGAAAGGTGAGATCTCAGCAG 60 NA InUTR Rattus norvegicus 81 Olr126 ENSRNOG00000029612 ENSRNOT00000043967 3 1 1 60 1 168883052 168883074 CTACAGAACTACCGTTATCTCCC 60 168883014 168883033 TGCCAATTTCACAATAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cecr5 ENSRNOG00000011338 ENSRNOT00000015090 3 1 1 80 4 153048170 153048352 CTGTATGCTATAGGTGATAACCCT 60 153048113 153048131 ACCATTTGCCATTTGCAGG 60 NA Rattus norvegicus 81 Trmt5 ENSRNOG00000007785 ENSRNOT00000078190,ENSRNOT00000010546 2 2 2 82 6 96165616 96165635 TAACAAGGAGATGCTGTGCA 60 96165190 96165572 GGTCATTCTGTAGACCGAGG 60 NA Rattus norvegicus 81 AC126148.3 ENSRNOG00000060849 ENSRNOT00000083585 3 1 1 80 1 222521510 222521529 AGTCGAACTAGTGTGATGGA 58 222521570 222521679 CTCTTCTAGCTCATCACTGTC 58 NA Rattus norvegicus 81 Gtf2a1l ENSRNOG00000016703 ENSRNOT00000022380 2 1 1 80 6 12465575 12465594 GATGATGTCAGTGAGCAGGA 60 12465633 12468333 CCGGTGAATCTTATCATACTGAC 59 NA Rattus norvegicus 81 Zfp84 ENSRNOG00000029043 ENSRNOT00000073521 3 1 5 80 1 87861203 87910937 GTCTTCTATCAGAAGTCACACC 58 87910974 87910996 GCCACATTCCTTACACTTATAGG 59 NA Rattus norvegicus 81 Tbc1d10a ENSRNOG00000006394 ENSRNOT00000008788 1 1 1 80 14 84443949 84443969 CAGTATGAAACCATCGAGCAG 59 84444010 84444575 CTCTATCACCTCCTGAACCA 58 NA Rattus norvegicus 81 Mcm2 ENSRNOG00000016316 ENSRNOT00000022231 2 1 1 80 4 120833995 120834760 AGTGATATGTGCAAAGAGAACC 59 120833936 120833955 GTATGCCAACACATGTTCCC 60 NA Rattus norvegicus 81 Them5 ENSRNOG00000043445 ENSRNOT00000066020 1 1 1 80 2 195584044 195584063 CTCCTTCAAGTCCAACAGAG 58 195584106 195585029 CAGTCCTGTTTGTCTGAGG 58 NA Rattus norvegicus 81 RGD1563159 ENSRNOG00000042727 ENSRNOT00000064799 3 1 1 80 18 30801817 30801964 TCAACTACTTTAAGGTGCCGA 60 30801757 30801775 TATGATACAGCTGCGTGCA 60 NA Rattus norvegicus 81 Phex ENSRNOG00000023440 ENSRNOT00000010970 3 1 1 80 X 40530640 40534242 CCGAAGCCAAATCTTATCGT 59 40534284 40534303 CTCGAGAGCTATTAGCTCCT 58 NA Rattus norvegicus 81 Ephb1 ENSRNOG00000007865 ENSRNOT00000010634 2 1 1 80 8 110419484 110419502 TGTCTGACTTTGGCCTCTC 59 110392457 110419441 GTATCTTCCCTCCCAAGGAG 59 NA Rattus norvegicus 81 Ly86 ENSRNOG00000000137 ENSRNOT00000000149 1 1 1 80 17 28147054 28178663 GTCTACCAGAGCTGTGATCC 60 28146993 28147013 GTTGAGATTTGGCTGGATCTG 59 NA Rattus norvegicus 81 Prl5a2 ENSRNOG00000039075 ENSRNOT00000088228,ENSRNOT00000059757 1 2 2 80 17 38461286 38462011 TCATTGCTCAAATTGGTTCG 57 38462053 38462072 CAGATGCAATGATGGAAGTC 57 NA Rattus norvegicus 81 Rn60_X_0586.1 ENSRNOG00000051324 ENSRNOT00000076188 3 1 1 60 X 57715402 57715421 ATGGAGGCTTATCTATCCCT 57 57715361 57715382 TTGCTTTCAGAGACATAACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r48 ENSRNOG00000031210 ENSRNOT00000045994 2 1 2 80 1 66959792 66959813 GCCGAAAGACCAGATTATAGAG 59 66959854 66969428 GACAGAGTCTGTGGAATGC 58 NA Rattus norvegicus 81 Guca2a ENSRNOG00000008849 ENSRNOT00000011867 3 1 1 92 5 138685645 138685663 CATGAATGCCTGGTTGCTG 60 138685718 138686514 AAGGAAAGGTCTCCATCCTG 59 NA InUTR Rattus norvegicus 81 Stim1 ENSRNOG00000020425 ENSRNOT00000088370,ENSRNOT00000027685 1 2 2 80 1 167489809 167506849 CATCAGAAGTGTATAACTGGACC 59 167506889 167506907 TCTCCTCATACTGTGGCAG 59 NA Rattus norvegicus 81 Tmem154 ENSRNOG00000010866 ENSRNOT00000014433 2 1 1 80 2 183694538 183700007 CCCAAGCAGGATGATCTAGG 60 183700954 183700975 CTCTATTTCCATAACGGAGGGT 60 NA Rattus norvegicus 81 Cdc20 ENSRNOG00000028415 ENSRNOT00000036151 3 1 1 80 5 137263955 137263974 AGGCTTGCAGATACATTCCT 59 137263799 137263917 CAAGATTCAGGTAGTAGTCATTCC 59 NA Rattus norvegicus 81 Agap3 ENSRNOG00000012764 ENSRNOT00000064386,ENSRNOT00000084777,ENSRNOT00000087120 1 3 3 87 4 7217200 7217219 ATCCTTGAACAAGGAGTGGA 59 7212054 7217150 CATGTAATCGTGCAGGCTG 59 NA Rattus norvegicus 81 Pfdn1 ENSRNOG00000018653 ENSRNOT00000025353 3 1 1 80 18 29286888 29290402 CTGGAGTTGAAGAAGGCCT 59 29286826 29286846 CTGTATGTCTGCAAGCTTCAC 60 NA Rattus norvegicus 81 Coq10b ENSRNOG00000014456 ENSRNOT00000040461 3 1 1 85 9 61664533 61667257 TGGTAAAGGCCTCTTGTACTG 60 61667304 61667322 TGGATAGCCAGGAAGACCT 60 NA Rattus norvegicus 81 Ttc28 ENSRNOG00000032590 ENSRNOT00000046920 1 1 1 80 12 51584080 51584098 TGGTCTCTTGGGAACACAG 59 51583041 51584036 TGTCTGGTCACCTAAGGTC 58 NA Rattus norvegicus 81 Prl7a3 ENSRNOG00000016616 ENSRNOT00000022381 3 1 1 80 17 39034712 39035447 GGATGTATGCAGTCAACGA 58 39041088 39041106 CCACGAACTCCATATCCTC 57 NA Rattus norvegicus 81 Zp2 ENSRNOG00000057989 ENSRNOT00000080996,ENSRNOT00000088536 3 2 2 80 1 189905628 189905648 TGAAGCTCTTGTTCTCAAGTC 58 189905463 189905586 AAGCCACAGAAAGATCTGG 57 NA Rattus norvegicus 81 Ndufaf6 ENSRNOG00000040040 ENSRNOT00000061569 3 1 1 80 5 24317715 24317734 TTACTGTTCCCTGCAGAGTG 60 24314702 24317672 CGAGTCCTTAACCTGAGCC 60 NA Rattus norvegicus 81 LOC100362110 ENSRNOG00000030481 ENSRNOT00000046719 1 1 1 80 13 41806015 41806033 CTGTTTCGGCTCCTTACAG 58 41806074 41808333 ATGACAGATCCTTCATGAACAG 58 NA Rattus norvegicus 81 Ppidl1 ENSRNOG00000037230 ENSRNOT00000056255 1 1 1 60 9 121457683 121457703 GACCCTTCAAACACTAAAGCA 59 121457722 121457743 ATTCTTTCAATCCTTGCCATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC128084.1 ENSRNOG00000056310 ENSRNOT00000040493 1 1 1 60 9 65172478 65172497 CATCAAGCACTCAAAGAGCA 59 65172518 65172538 CTTCTGATCGTTCTCCTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpinb13 ENSRNOG00000028194 ENSRNOT00000031789 2 1 1 80 13 27051125 27061746 ATGGCCTAGAGAAGATAATCGA 58 27061787 27061805 TCCTTTGCTTCAGTTGTCC 58 NA Rattus norvegicus 81 Olr1238 ENSRNOG00000049454 ENSRNOT00000044272 1 1 1 60 8 42296985 42297003 GTTCATCTAAGGGCAGGTC 58 42297025 42297045 GAAACAACAATGATGTGGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msto1 ENSRNOG00000020357 ENSRNOT00000027579 1 1 1 80 2 188213605 188213696 TTTCTCTGGGAAGAAGGTGG 59 188213544 188213564 AGAATGTCAGGAAGTGACTGG 60 NA Rattus norvegicus 81 Sik1 ENSRNOG00000001189 ENSRNOT00000001579 3 1 1 81 20 10678697 10678715 TGGAGAAGATCTACCGGGA 59 10676169 10678654 GTCTCCATAACCTGGTAAAGC 59 NA Rattus norvegicus 81 Zfp28 ENSRNOG00000042777 ENSRNOT00000020523 2 1 1 80 1 71172759 71172778 CCAGATATGATTGCCTTGCT 58 71171666 71172716 CACAGCCTTCAAGTCTGTG 59 NA Rattus norvegicus 81 RGD1311847 ENSRNOG00000023700 ENSRNOT00000030617 3 1 1 80 16 19092035 19093265 AAAGGTGTTCTTGGATCTGAC 58 19091975 19091994 GTCGACTTTAAGCTGGACTG 59 NA Rattus norvegicus 81 Asb18 ENSRNOG00000019557 ENSRNOT00000040169 3 1 1 81 9 97130290 97151635 ATTGCTAGGAGACCTGGAC 59 97130227 97130246 AGTACTGATCTCGAACACCA 58 NA Rattus norvegicus 81 Hars2 ENSRNOG00000016087 ENSRNOT00000021797 1 1 1 80 18 29632311 29633408 CGCTATGACCTTACTGTCC 57 29633452 29633470 CTTTCCCACTTGATACCGT 57 NA Rattus norvegicus 81 Mtmr3 ENSRNOG00000007120 ENSRNOT00000057501,ENSRNOT00000078838 1 2 2 80 14 84742516 84748617 GGAGTCTCTTGTGAATGTTCC 59 84742456 84742475 TTGCATGTCAAGTGAAGCTG 60 NA Rattus norvegicus 81 Mtmr3 ENSRNOG00000007120 ENSRNOT00000057501,ENSRNOT00000078838 3 2 2 80 14 84712577 84712598 CTTGACTGTGTTCATCAACTCC 60 84711880 84712536 CTGAACCAGCTTCACAAGG 59 NA Rattus norvegicus 81 Tmem38a ENSRNOG00000011912 ENSRNOT00000064060,ENSRNOT00000086424 3 2 2 95 16 18962073 18962091 TGTTCACCTTGCAACAGAC 59 18960734 18962014 TCAGGAACACCTTACACGA 58 NA Rattus norvegicus 81 Pvrl3 ENSRNOG00000002176 ENSRNOT00000002957 2 1 1 80 11 57960776 57965364 GTGACTGTGCTAGTTGAACC 59 57960715 57960734 TGCTACGGTCTCATTTCCTC 60 NA Rattus norvegicus 81 Dnaja2 ENSRNOG00000016251 ENSRNOT00000022573 2 1 1 80 19 22577714 22577732 TGATAAGACAGCTGGCTCC 59 22577775 22579843 TGATGACCTCTCCTTCTCCA 60 NA Rattus norvegicus 81 AABR07020786.1 ENSRNOG00000039928 ENSRNOT00000049137 3 1 1 88 13 40300456 40300474 GACTACAGCAGATCCTCGG 59 40300527 40300545 TAACTTACCACTTGGTCGC 58 NA DesignNoJunction Rattus norvegicus 81 Gja8 ENSRNOG00000046703 ENSRNOT00000071622 2 1 1 60 2 199051896 199051915 GCCACATCATCTTCAAGACC 59 199051855 199051874 TACAGGAAGTAATGGCCCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpinb2 ENSRNOG00000002460 ENSRNOT00000003409 3 1 1 80 13 27460458 27461968 CTTGGAGATGCTGGAAAGG 58 27462010 27462030 ACATCATCTTCATCCAGTGTC 58 NA Rattus norvegicus 81 Rspo4 ENSRNOG00000009662 ENSRNOT00000012951 2 1 1 82 3 147386817 147386835 GGAAGAGATGGCAAGTTGC 59 147386880 147389618 TGGGATTTCTTTCTCCTGGG 59 NA Rattus norvegicus 81 Dock5 ENSRNOG00000024703 ENSRNOT00000058887 2 1 1 80 15 44533336 44534907 AGTCCACCTTCATCAGTGAG 59 44533275 44533297 GGTTATTGAGCTTCTCTATCTCC 58 NA Rattus norvegicus 81 Idh2 ENSRNOG00000013949 ENSRNOT00000085988,ENSRNOT00000019059 1 2 2 80 1 141880341 141880360 CACTCAGAAGTACAGTGTGG 58 141878698 141880300 TTCTTCAGCTTGAACTCTTCC 58 NA Rattus norvegicus 81 AABR07062753.1 ENSRNOG00000004199 ENSRNOT00000005562 1 1 1 64 6 6180546 6180566 GCTGTATCTTATCTGGACCAG 58 6180589 6180612 GCTTTAGAAACCAATTTGGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Naaladl1 ENSRNOG00000021000 ENSRNOT00000054835 3 1 1 80 1 221480818 221480952 CCACCAAAGAGATCAGTGC 59 221480993 221481014 GACTACTGCGGTTAGTATATCG 58 NA Rattus norvegicus 81 LOC100361637 ENSRNOG00000048099 ENSRNOT00000066802 3 1 1 95 15 29903540 29903711 AATACTCAGAAGGAGCAATGGA 59 29903466 29903484 TGATAGGTGCAGTTCAGCA 59 NA Rattus norvegicus 81 AABR07053879.1 ENSRNOG00000027574 ENSRNOT00000030148 1 1 1 96 3 132053457 132053475 CAACTTCAACAGCAGCTCC 60 132053533 132053577 CACCCTGTTGCAGTAAATGAG 60 NA Rattus norvegicus 81 Snrpe ENSRNOG00000031127 ENSRNOT00000042614 2 1 1 60 8 129371833 129371854 GTATGAACAAGTGAATATGCGG 58 129371794 129371815 GTTCATGTACTCATCAAAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gnpda1 ENSRNOG00000047213 ENSRNOT00000071560 3 1 1 81 18 31483494 31483512 ATGGTGATCTTGCCAAGGT 59 31481915 31483451 AGGATCATCACCTCTTTAGCA 59 NA Rattus norvegicus 81 Nrsn1 ENSRNOG00000017444 ENSRNOT00000023519 3 1 1 87 17 41806433 41806453 CCTCTATCTGGGAGTATGAGG 58 41806502 41815378 GAGATGAGTCCGACCTTCC 59 NA Rattus norvegicus 81 Kdm6b ENSRNOG00000037613 ENSRNOT00000067677 3 1 1 80 10 56005570 56005589 GTGAAACCGAAGATCAACAC 57 56005403 56005528 GCTCTCCAAATAAATGCTGG 57 NA Rattus norvegicus 81 Zfp791 ENSRNOG00000023920 ENSRNOT00000037766 2 1 1 86 19 26243144 26243165 ATCAGTACAGAATCCAAGAGGA 59 26239278 26239299 TTTCTCTATGCTGAGTAACCTC 57 NA DesignNoJunction Rattus norvegicus 81 LOC100911241 ENSRNOG00000039251 ENSRNOT00000060114 2 1 1 82 18 35291730 35291748 CTCAGCAACATGAAGCCAG 59 35291794 35293375 TGGCTCACAGCATCTACAG 60 NA Rattus norvegicus 81 Gabra1 ENSRNOG00000003512 ENSRNOT00000004725 1 1 1 80 10 27315423 27320061 CTGTCTTTGGAGTGACGAC 58 27315361 27315379 CATAAGCCACCTTTGGGAG 58 NA Rattus norvegicus 81 Sbk1 ENSRNOG00000019082 ENSRNOT00000025808 3 1 1 86 1 67371549 67372156 CATCATCCCTCCTCAGGTG 59 67371481 67371500 CTATGCATGAAGTCCAGTGC 59 NA DesignNoJunction Rattus norvegicus 81 Mir103-1 ENSRNOG00000035503 ENSRNOT00000053626 3 1 1 60 10 20606728 20606746 CGGCTTCTTTACAGTGCTG 59 20606770 20606788 TCATAGCCCTGTACAATGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prdx2 ENSRNOG00000003520 ENSRNOT00000004799 2 1 1 107 19 26085528 26085638 CTACAGAGGGAAGTACGTGG 59 26085708 26085726 AGCTTTCGGAAGTCCTCAG 59 NA Rattus norvegicus 81 Prdx2 ENSRNOG00000003520 ENSRNOT00000004799 3 1 1 108 19 26085527 26085637 ACTACAGAGGGAAGTACGTG 59 26085708 26085726 AGCTTTCGGAAGTCCTCAG 59 NA Rattus norvegicus 81 Tmigd1 ENSRNOG00000003865 ENSRNOT00000005129 2 1 1 80 10 63272100 63274510 ACAGGGAAGGACAAGTTCTG 60 63272039 63272061 GCTTGGATACCATAGTAAGTGTC 59 NA Rattus norvegicus 81 Gadd45g ENSRNOG00000013090 ENSRNOT00000018252 3 1 1 94 17 13392561 13392579 AGCATTGCACGAACTTCTG 59 13392383 13392503 TGTCAGGGTCCACATTCAG 59 NA Rattus norvegicus 81 Aldh5a1 ENSRNOG00000023538 ENSRNOT00000031384 1 1 1 80 17 42140861 42140879 GCTCCGTAAATGGTACGAC 58 42140923 42142292 AGTGGCTTTCCACTCTCAG 59 NA Rattus norvegicus 81 Sstr1 ENSRNOG00000048145 ENSRNOT00000073970 1 1 1 75 6 79254397 79254416 CCTGAAATCTCCAGGTACAG 57 79254821 79254839 TAATAAGCAGCACCATCGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Brsk1 ENSRNOG00000017673 ENSRNOT00000031172 3 1 1 80 1 72706829 72706847 GTGGTAGAGACCATCCAGG 59 72701929 72706786 TCCATTCTTCTCATCTGCCA 59 NA Rattus norvegicus 81 Fam3d ENSRNOG00000007320 ENSRNOT00000009650,ENSRNOT00000085822 2 2 2 84 15 18349560 18351255 ACATGTACTCTGGAGAACCC 59 18351302 18351320 TCATAGGAGGCTACCAGCA 60 NA Rattus norvegicus 81 LOC100912573 ENSRNOG00000030689 ENSRNOT00000032937 3 1 2 81 1 227763115 227814924 AAATCTTTGGTAGATGGCAGC 59 227814965 227814985 TGGCAGACATGATAATGATGC 59 NA Rattus norvegicus 81 Lrfn5 ENSRNOG00000005550 ENSRNOT00000007600,ENSRNOT00000084258 3 2 2 87 6 83426396 83426414 CTTGCAGTTAGCTAGCTGC 59 83426465 83431872 AGTCAGCAAAGCATTTGGC 60 NA Rattus norvegicus 81 Rp1l1 ENSRNOG00000046326 ENSRNOT00000070815 1 1 1 88 15 47373747 47377203 GGGAAGAAGGTGGACTCTC 59 47377255 47377273 ATCTCCAGACGTCTGAAGG 59 NA Rattus norvegicus 81 Olr196 ENSRNOG00000060953 ENSRNOT00000085141 1 1 1 60 1 170072611 170072629 TCTATCTCCTTGTGCCACC 59 170072569 170072587 ATCTGTCGAGTCTTCACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr196 ENSRNOG00000060953 ENSRNOT00000085141 3 1 1 60 1 170072799 170072818 TTTCCTATGCCCTCATCCTC 59 170072758 170072777 TTAAGTCTGGCTTCACCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gss ENSRNOG00000018964 ENSRNOT00000025657 2 1 1 80 3 151086296 151086314 TGCTCAGGAGAAGGAAAGG 59 151086144 151086254 CGGATTACATGGATCTTCCTG 58 NA Rattus norvegicus 81 Pkdcc ENSRNOG00000004205 ENSRNOT00000005664 1 1 1 82 6 6432017 6432881 GATTCCGAATCTGCCTCAG 58 6432927 6432945 GAAGTCAAGCAGAGTGACC 58 NA Rattus norvegicus 81 Pdzd9 ENSRNOG00000016292 ENSRNOT00000044384,ENSRNOT00000079335 1 2 2 86 1 190591156 190591177 TCGAGGCTTTATTGAAATACCC 59 190586544 190591110 TTTGGTGTATGTGGGATTGG 58 NA Rattus norvegicus 81 Ppp2r2b ENSRNOG00000018851 ENSRNOT00000041188,ENSRNOT00000079585 1 2 2 80 18 37007714 37007732 ACCAGAGACTATCTGACCG 58 36988929 37007673 GTAGTCATGAACCTGGTATGTC 58 NA Rattus norvegicus 81 Taar7d ENSRNOG00000045914 ENSRNOT00000051416 2 1 1 60 1 22488018 22488037 ACCTGAACAGATCCTGTGTC 60 22487977 22487995 GCATAGAGGATGAGGCGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Angptl4 ENSRNOG00000007545 ENSRNOT00000010031 2 1 1 80 7 18630002 18630925 CTGTGAGATGACTTCAGATGGA 60 18629943 18629963 TCCCAAGACTGATTGAAGTCC 60 NA Rattus norvegicus 81 Vom2r46 ENSRNOG00000030104 ENSRNOT00000031015 1 1 1 80 2 154672955 154730040 GCCTTTGATGTCCTTCTGG 59 154672893 154672916 CCCTTCATAATAGTTATCTGGCAG 59 NA Rattus norvegicus 81 Npy5r ENSRNOG00000014172 ENSRNOT00000018976 3 1 1 81 16 24797348 24802913 ATCCCGAGGATTCTAGTATGGA 60 24802954 24802973 GCAGCAGCTGTATTGTTCTC 60 NA InUTR Rattus norvegicus 81 Hdhd3 ENSRNOG00000015195 ENSRNOT00000020380 1 1 1 188 5 78359254 78361537 AGGATCTTGTGCTGAAAGAC 58 78359085 78359103 TCAGTAGACGCATCTGGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gcm2 ENSRNOG00000015008 ENSRNOT00000020244 3 1 1 107 17 21495135 21495153 ATTCAGCTTTGGAGCTGGT 60 21495224 21495914 CATGAACTCCTTTGGCCTG 59 NA Rattus norvegicus 81 Gpr108 ENSRNOG00000046128 ENSRNOT00000075403 1 1 1 80 9 9710221 9710239 AGTACAGCCTCAACTTCCA 58 9710282 9711505 CTCGGATCATTACAGTGAGG 58 NA Rattus norvegicus 81 Btla ENSRNOG00000030246 ENSRNOT00000050092 1 1 2 80 11 60532613 60536078 CATCCATGTGACAGAAAGGAC 59 60531105 60531123 GCATTGGTAGCATTTGGGA 59 NA Rattus norvegicus 81 Jakmip2 ENSRNOG00000019159 ENSRNOT00000025927,ENSRNOT00000077814 1 2 2 80 18 37965026 37965046 AGAAACATCATCCATGACCTC 58 37963799 37964984 GCAGCTAGACTTTCATCCA 57 NA Rattus norvegicus 81 Iars ENSRNOG00000014616 ENSRNOT00000086344,ENSRNOT00000019862 2 2 2 80 17 15359742 15359760 TGAAGAGCGTCATTACCAG 57 15358875 15359700 GGTTCTGTAATTCTGTTCCAC 57 NA Rattus norvegicus 81 Slc38a9 ENSRNOG00000009851 ENSRNOT00000013218 3 1 1 80 2 44561974 44564035 TTAATATCCTGGGTACGGTATCTG 60 44564073 44564092 CCAGATGGAATCCTAAGCGA 59 NA Rattus norvegicus 81 Olr1280 ENSRNOG00000050953 ENSRNOT00000073657 2 1 1 60 2 115075122 115075140 TCATGTACCTTCAGCCCTC 59 115075164 115075182 AACACAGACGACACTTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpap1 ENSRNOG00000005483 ENSRNOT00000007299 1 1 1 80 3 111583282 111583300 CGATGAAGACCCTGAGGAG 59 111582990 111583243 GTATCCCGTTCAACAATCTTAGAC 60 NA Rattus norvegicus 81 Golga3 ENSRNOG00000037437 ENSRNOT00000056656 1 1 1 80 12 52527373 52527391 GATCACGATGACTAGCCAG 58 52526428 52527330 CCTCTGGATTCTTGAAGCTC 58 NA Rattus norvegicus 81 Tmlhe ENSRNOG00000000729 ENSRNOT00000076901,ENSRNOT00000049573 3 2 2 82 20 248554 248573 GTGAATTGTACTTGGCACCA 59 250938 254200 TATTGCAGTTCTAGCAAGCG 59 NA Rattus norvegicus 81 Spry4 ENSRNOG00000013851 ENSRNOT00000018511 1 1 1 108 18 32595193 32605362 TCTGCAGCTCCTCAAAGAC 60 32605434 32605452 AGCTGGGATTCAAAGGGAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rtf1 ENSRNOG00000005183 ENSRNOT00000056392 1 1 1 80 3 111522994 111523774 GAAGAAGAGAAAGAAGAAATCCCTC 60 111523812 111523830 CCTTGATAACCGAACCCGA 60 NA Rattus norvegicus 81 Rtf1 ENSRNOG00000005183 ENSRNOT00000056392 2 1 1 80 3 111530952 111530972 GCTAAATGAGCTAGAAGAGCG 59 111531012 111531190 TGGTTGATGTAGCTGATAGCA 59 NA Rattus norvegicus 81 Ndufa2 ENSRNOG00000017571 ENSRNOT00000023811 1 1 1 60 18 29587660 29587678 CATTCACTTATGCCAGCGT 59 29587487 29587637 CCGTTGCTGGATGAAATCTC 59 NA DesignNoJunction Rattus norvegicus 81 Spib ENSRNOG00000019660 ENSRNOT00000026599 3 1 1 142 1 100535256 100536567 GCTGTTTGTACCCAGAAGG 59 100534881 100534899 GAAAGCTTCATAGGCAGCG 59 NA Rattus norvegicus 81 S100a5 ENSRNOG00000011748 ENSRNOT00000015712 2 1 1 80 2 190004031 190005614 CTTGCAGAGAAGATGAAGGAG 59 190005656 190005674 GAAGTCAATCTCCTGGTCG 58 NA Rattus norvegicus 81 Vwa5a ENSRNOG00000046414 ENSRNOT00000000211 1 1 1 80 3 159003052 159008188 AAGAAGCGAGATAGTTTGATGG 59 159008228 159008247 CTTTGAGGCGTTCACTTCTG 60 NA Rattus norvegicus 81 Fggy ENSRNOG00000008907 ENSRNOT00000011767 2 1 1 80 5 114816565 114822763 TATTCAAGCCATTGCTTTCGG 60 114822799 114822823 AAGAAGAGGGTACTAAGAGAATGTC 60 NA Rattus norvegicus 81 Ppm1g ENSRNOG00000026905 ENSRNOT00000031842 1 1 1 80 6 26533597 26533617 GCTAAGTCCAAGTTCTTTGAG 57 26533656 26534646 ACTACATTCCTCACTGTTATCC 57 NA Rattus norvegicus 81 Pcdh17 ENSRNOG00000008970 ENSRNOT00000045882 3 1 1 80 15 67588829 67643255 CCACTTGAACAAGAACCGG 59 67643294 67643317 CATCCAACATCTATCAGAATGACC 60 NA Rattus norvegicus 81 Csrnp3 ENSRNOG00000005359 ENSRNOT00000007197 3 1 1 115 3 51918867 51995358 GATCTCACGGTACATGTGAC 58 51995436 51995454 GACTTCGTCATCCGATTCC 58 NA Rattus norvegicus 81 Erlin1 ENSRNOG00000012911 ENSRNOT00000017268 1 1 1 80 1 263823136 263824697 TTTGAGTTAATGGAGGCAGAG 58 263823076 263823095 TGTCTCAGCTTCTTTCTCCA 59 NA Rattus norvegicus 81 Etfdh ENSRNOG00000009538 ENSRNOT00000013262 3 1 1 80 2 178379570 178379590 TGAAGATGGTAGTGTGAAAGG 58 178376802 178379531 CTCTCAAATGTTGTCTTTGGTG 58 NA Rattus norvegicus 81 Maml1 ENSRNOG00000003268 ENSRNOT00000004361 3 1 1 82 10 35775688 35775709 CTCCTTGTTTCTGATGAAACCA 59 35773497 35775645 TGGAAGGATTCTGCTCCTG 59 NA Rattus norvegicus 81 Tmem176a ENSRNOG00000023708 ENSRNOT00000049891 1 1 1 91 4 78461265 78461730 CATGCTAAAGACCCTGCTC 58 78461783 78461803 AGACACATACAGGGATGAGAG 59 NA Rattus norvegicus 81 RGD1309079 ENSRNOG00000008519 ENSRNOT00000011263 3 1 2 80 8 102127400 102139607 GAAAGTACCCATTATGAACCGAG 59 102127342 102127361 CCTCATGATTGCCAAGATCC 59 NA Rattus norvegicus 81 Ears2 ENSRNOG00000025353 ENSRNOT00000071946 3 1 1 80 1 192014507 192014526 CCTGTTTCTGTTCACCACAG 59 192008459 192014465 GATTGTCATACCGAGGTGTC 58 NA Rattus norvegicus 81 RGD1306995 ENSRNOG00000042555 ENSRNOT00000030268 2 1 1 81 11 64489068 64489087 CCTCCATCACAAACAAAGTG 57 64489129 64490029 TCTGTAGTGATATCAGCAGTG 57 NA Rattus norvegicus 81 Rn60_20_0038.2 ENSRNOG00000060724 ENSRNOT00000085984 3 1 1 60 20 1679126 1679150 AGGAGTAAATCAAGGTCTACTACAG 60 1679090 1679112 GCTTCAATTCTTCTCTATGAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1303003 ENSRNOG00000001211 ENSRNOT00000001609 2 1 1 171 20 11245269 11246603 GAGAAGGAAAGCAGGAACG 59 11249748 11249766 TAACCTTGCAGTCCTTCCC 59 NA Rattus norvegicus 81 Tmed1 ENSRNOG00000008037 ENSRNOT00000061009 3 1 1 85 8 22541849 22541867 GAGGAGGTAGAAGGTTGGG 59 22541270 22541804 GTCTCTATGGATTCCTTGATGTC 59 NA Rattus norvegicus 81 Slurp1 ENSRNOG00000005944 ENSRNOT00000007923 3 1 1 95 7 115962608 115962626 CACGGCCATTAACTCATGC 60 115962036 115962549 AAAGGGAACTCTGCTTCCA 59 NA Rattus norvegicus 81 Gcg ENSRNOG00000005498 ENSRNOT00000007356 2 1 1 80 3 48446683 48446702 ACAGCAAATACCTGGACTCC 60 48445054 48446641 CAATGTTGTTCCGGTTCCTC 60 NA Rattus norvegicus 81 LOC102554388 ENSRNOG00000048510 ENSRNOT00000071412 2 1 1 60 8 41916767 41916786 ACATTCTTGGTTTCCATGCT 58 41916808 41916827 TCTTGACATCCTTGTTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Per2 ENSRNOG00000020254 ENSRNOT00000027506 3 1 1 80 9 98569274 98569296 GAGGAACTAACCTATAAGAGCCA 59 98569126 98569235 CTCCAGGTACCTGATGACAC 60 NA Rattus norvegicus 81 Tmem18 ENSRNOG00000005144 ENSRNOT00000006836,ENSRNOT00000079520 1 2 2 80 6 49530745 49530763 ACTTCTCACATGCTTCTCC 57 49530804 49532450 GCACAATAGACTAACACTACCA 58 NA Rattus norvegicus 81 LOC102549817 ENSRNOG00000051152 ENSRNOT00000076994,ENSRNOT00000076656 3 2 2 81 7 9826344 9826366 TAGATCCTTCCCAGAAGAATCTC 59 9826090 9826305 TCCCATTTACACCCTATACCA 58 NA Rattus norvegicus 81 Zfp330 ENSRNOG00000003461 ENSRNOT00000080337,ENSRNOT00000004614 2 2 2 80 19 23937398 23937796 GATCTTAGCATGTCAACACG 57 23937337 23937355 ATCATACCCAGAAGCTCCA 58 NA Rattus norvegicus 81 Olr1217 ENSRNOG00000047328 ENSRNOT00000042784 2 1 1 60 8 40765538 40765559 AATAATACCCAGCCTGACTCTC 60 40765580 40765598 GCTGAGGATGTTGGAAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nit2 ENSRNOG00000027797 ENSRNOT00000029420 1 1 1 80 11 45472532 45472872 AGACATAGACCTGAAGAAGCTG 60 45472912 45472931 ACTGAATAGAGGTCTGCTCG 59 NA Rattus norvegicus 81 LOC498460 ENSRNOG00000028821 ENSRNOT00000051556 3 1 1 61 15 18516965 18521110 CAGAATGATGTGCTCATGAGG 59 18516924 18516943 GTAGCAGAGCTGATGAAGTC 58 NA DesignNoJunction Rattus norvegicus 81 Kcnk3 ENSRNOG00000009790 ENSRNOT00000013107,ENSRNOT00000068412 2 2 2 101 6 27155933 27189842 TCACCACAATCGGCTATGG 60 27155850 27155868 ACATGACTAGTGTGAGCGG 60 NA Rattus norvegicus 81 Prl6a1 ENSRNOG00000017089 ENSRNOT00000022944 2 1 1 83 17 42708112 42708893 GTGTATTTCTGGAGGATGTGC 59 42708049 42708067 TAAATGGTGATCGGTGGCA 59 NA Rattus norvegicus 81 Olr1397 ENSRNOG00000029739 ENSRNOT00000048253 1 1 1 60 10 34727561 34727581 GTAGCACTAATTCTAGGCACC 58 34727602 34727621 TTGACTTGATCTTCAGCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Calm2 ENSRNOG00000030871 ENSRNOT00000046240 1 1 1 60 15 65507741 65507761 GATCAATGAAGTAGATGCCGA 58 65507701 65507720 CATTGTCAGGAATTCAGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0038.3 ENSRNOG00000058119 ENSRNOT00000083355 2 1 1 60 20 1694538 1694557 CCTTGGTAACTCCCACTCTG 60 1694497 1694521 CTCTTAACATCCCTATTTCTCAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col6a2 ENSRNOG00000001254 ENSRNOT00000001695 1 1 1 80 20 12782383 12782403 TACTGAGATTGACCAGGACAC 59 12782637 12783375 CTCACCTTGTAGCACTCTCC 60 NA Rattus norvegicus 81 Col6a2 ENSRNOG00000001254 ENSRNOT00000001695 3 1 1 80 20 12793605 12793624 CATCGATGACATGGAAGACG 59 12793764 12800152 ACATAGAGCTCTGTTTGGCA 60 NA Rattus norvegicus 81 Pigf ENSRNOG00000015325 ENSRNOT00000020600 2 1 1 80 6 10588666 10588687 TACCTTGTCTGTGTTTGTTAGG 58 10577743 10588626 CCCAAACAGATGTAACTCCA 58 NA Rattus norvegicus 81 Lnp1 ENSRNOG00000039649 ENSRNOT00000060802 1 1 3 92 11 45888302 45888320 AGAGACAAGGATGAGCGAG 59 45888376 45902393 AAATGCAGGAAATGGGCAG 59 NA Rattus norvegicus 81 LOC100362690 ENSRNOG00000046489 ENSRNOT00000030635 3 1 1 82 8 38240254 38240901 GGCTTCCTACAAGCTTTGAC 59 38240940 38240964 TTACAGGTAGAGTATCCTTTCTCAC 60 NA Rattus norvegicus 81 Olr1095 ENSRNOG00000050274 ENSRNOT00000051928 2 1 1 60 7 15622291 15622309 CAGCCAGATGTTCTTCTCC 58 15622332 15622351 CATGACGGTGAGTAGAAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acbd3 ENSRNOG00000003185 ENSRNOT00000085390,ENSRNOT00000004293 1 2 2 88 13 99024233 99025858 AAATGGACCCAAAGACTCTC 58 99025906 99025927 GCCGAATCTTCTCTTTAAAGTC 58 NA Rattus norvegicus 81 Olr1417 ENSRNOG00000047803 ENSRNOT00000047037 2 1 1 60 10 43997756 43997779 CTGCTATCTATAACTACATGCTCC 59 43997719 43997737 ACCACCATGTCCTTCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnttip2 ENSRNOG00000025025 ENSRNOT00000036931 2 1 1 80 2 225865353 225865372 CGGATTCCCAAGAAACAGAG 59 225865410 225866083 CCTTCGATTAAATCTCCTGAACTC 59 NA Rattus norvegicus 81 AABR07069676.1 ENSRNOG00000047150 ENSRNOT00000072224 1 1 1 80 8 37449411 37450252 CCCTTCAAGCTTTGCAGTG 60 37449349 37449371 TCTGGCATATAAGTCTTCCAGTC 60 NA Rattus norvegicus 81 AC126892.1 ENSRNOG00000057696 ENSRNOT00000082228 3 1 1 86 1 197677237 197677844 CATCATCCCTCCTCAGGTG 59 197677893 197677912 CTATGCATGAAGTCCAGTGC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100909989 ENSRNOG00000031423 ENSRNOT00000047107 1 1 1 60 8 42651024 42651042 CCAGCACTTACAACAACGA 58 42651065 42651084 GACACAACAATGTTCATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spink3 ENSRNOG00000013464 ENSRNOT00000018110 2 1 1 80 18 38239525 38241985 TTTAGCAGGTAACCCTCCA 58 38238004 38238022 TAAATCCTGGGACATCCCA 58 NA Rattus norvegicus 81 Med27 ENSRNOG00000013933 ENSRNOT00000019157 3 1 1 80 3 7946654 8002562 CTACCGCCTCAATATGTGGA 59 8002603 8002623 GGGTCTCGATAAGTGAATGGA 59 NA Rattus norvegicus 81 Vom1r42 ENSRNOG00000028877 ENSRNOT00000041518 3 1 1 60 1 67302175 67302194 ACTGTCCTTCTCTGATGTCC 59 67302134 67302153 TATCATGGAGACACTTGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss16 ENSRNOG00000057865 ENSRNOT00000086540 1 1 1 80 17 44557160 44557307 GCTCAGTAATGACAGGGCA 60 44557349 44557369 CATAGAATCTGTGTTCCAGGC 59 NA Rattus norvegicus 81 Cers6 ENSRNOG00000024595 ENSRNOT00000058763 1 1 1 80 3 55157697 55165598 CCGCCATAACAAAGCATCC 60 55165641 55165660 GTTGAATGCTCCGAACATCC 60 NA Rattus norvegicus 81 Cers6 ENSRNOG00000024595 ENSRNOT00000058763 3 1 1 80 3 55273070 55273088 TTACATCCTGGAGCTGTCG 59 55273131 55291799 ATAATGCCGAAGTCCTTCCT 59 NA Rattus norvegicus 81 Retnlb ENSRNOG00000032187 ENSRNOT00000046890 3 1 1 101 11 54567003 54567024 AAGATCAAGAAAGCACTCAGTC 59 54565725 54566260 GACAACCATCCCAACAGGA 60 NA Rattus norvegicus 81 Pabpc5 ENSRNOG00000003354 ENSRNOT00000004462 1 1 1 60 X 92131605 92131626 CTTTCCTGTAAAGTCGTATGTG 57 92131644 92131665 CGAAGTGAACATAAGCATAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nop58 ENSRNOG00000016486 ENSRNOT00000022676,ENSRNOT00000091283 3 2 2 80 9 66510826 66511916 TTACAGAAAGTTGGAGACAGGA 59 66511955 66511975 CACTTCAGCTTCTACTTCCTC 58 NA Rattus norvegicus 81 LOC499276 ENSRNOG00000022900 ENSRNOT00000031258 1 1 1 91 1 201700927 201702529 AAATTCTACAACTCGGTGGC 59 201700855 201700873 GAGTTCCCTCAGCATCCTC 60 NA Rattus norvegicus 81 Idh3B ENSRNOG00000007316 ENSRNOT00000009681 2 1 1 80 3 122810723 122810837 GAACATGAGAGTGCAAGGG 59 122810661 122810679 GGCAAACTTTGCAATCCTC 58 NA Rattus norvegicus 81 Hnrnpa3 ENSRNOG00000027006 ENSRNOT00000035567 3 1 1 112 10 80953436 80953458 GACCTACTCGTGTGAGGTG 60 80953533 80953552 CACCAGGCTTTACAGAATCC 59 NA Rattus norvegicus 81 Il36g ENSRNOG00000005701 ENSRNOT00000007512 3 1 1 80 3 1286900 1287755 TGTAACTCCAGTCACTGTGAC 60 1287794 1287815 AAATAAATGGGAGTCCCTTTGC 59 NA Rattus norvegicus 81 Olr1735 ENSRNOG00000050043 ENSRNOT00000048856 2 1 1 60 20 1750177 1750197 CCTGCTTCACTCTGTAATGAC 59 1750218 1750237 ATGATGGACATGATTGGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp11b2 ENSRNOG00000030111 ENSRNOT00000091401,ENSRNOT00000068707,ENSRNOT00000038109 2 3 3 80 7 116156939 116157196 CTTAAAGAGACCTTGAGGCTC 58 116156879 116156898 ATAGTTCTGAAGCACCAGGT 59 NA Rattus norvegicus 81 Tmem68 ENSRNOG00000008872 ENSRNOT00000012215 2 1 1 84 5 16407341 16407359 CTCACAACTTGTGGGATGG 59 16395749 16407294 TGAACTTCATAACCATGCCA 58 NA Rattus norvegicus 81 Entpd1 ENSRNOG00000014574 ENSRNOT00000054719 3 1 1 80 1 259801905 259802916 GACATTCAGGTTTCAAGTGGT 59 259802957 259802976 TTCGCTTACATTCACAACCT 58 NA Rattus norvegicus 81 Prmt1 ENSRNOG00000026109 ENSRNOT00000064272 1 1 1 80 1 100977699 100977717 CCAATGCTGAGGACATGAC 59 100976381 100977655 CCTTTAGCATCTCCTCGTG 58 NA Rattus norvegicus 81 Glo1 ENSRNOG00000000541 ENSRNOT00000000650 2 1 1 83 20 9279849 9283068 TCTTGGACTGACGCTTCTC 60 9279784 9279803 TCGTTCTTATCCTCGTACGC 60 NA Rattus norvegicus 81 Slc46a3 ENSRNOG00000000937 ENSRNOT00000001243 1 1 1 80 12 8726489 8733012 CATTCCAGGAGGAAGTTCAG 58 8733053 8733073 ACACTAGACCAGGAATTAACC 57 NA Rattus norvegicus 81 Ltk ENSRNOG00000025130 ENSRNOT00000030532 1 1 1 80 3 111556674 111556929 GAGTCCTAATTCTAGTGAACCAG 58 111556616 111556634 TACTCAGCTCAAGCTCAGG 59 NA Rattus norvegicus 81 Bcl2l1-ps1 ENSRNOG00000018503 ENSRNOT00000024954 3 1 1 60 1 167765208 167765231 CTAACATCCCAGCTTCATATAACC 59 167765171 167765190 AAGTGTCCTGTTCAAAGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plekhb1 ENSRNOG00000018627 ENSRNOT00000082697,ENSRNOT00000025245 2 2 2 81 1 165667646 165667666 GACTACTATGAGGTGGTACCC 59 165667086 165667603 CACCAGGACCATAAGGTGG 60 NA Rattus norvegicus 81 Slc4a5 ENSRNOG00000010378 ENSRNOT00000014249,ENSRNOT00000082336 3 2 2 80 4 114962585 114964202 CATGGTGGATGATCTCTTCAG 58 114964242 114964262 AGAAATTCATCAACTCCTGCG 59 NA Rattus norvegicus 81 Cdc42se1 ENSRNOG00000060538 ENSRNOT00000086849 2 1 1 81 2 196406558 196407675 GATGGACTTGCCATGACAG 59 196407720 196407738 CCCTAGAGTTGCTCCATGG 60 NA Rattus norvegicus 81 Gfra2 ENSRNOG00000014010 ENSRNOT00000019222 3 1 1 82 15 52636393 52636411 CTCCTACCGGACAATCACC 60 52636455 52637178 TATCAAACCCAATCATGCCAG 59 NA Rattus norvegicus 81 Prpf4b ENSRNOG00000016705 ENSRNOT00000022902,ENSRNOT00000081993 1 2 2 80 17 30699845 30703886 CCTCGAAGAAGAGATAGGAGTC 59 30699786 30699804 CCTTCTCCTATGACCACCC 59 NA Rattus norvegicus 81 Ccdc69 ENSRNOG00000021370 ENSRNOT00000039040 1 1 1 80 10 40397819 40397837 CAGCAGACATCGAATGCAC 60 40395664 40397775 ACACGTGTTCTGCAATGAG 59 NA Rattus norvegicus 81 Gramd3 ENSRNOG00000015225 ENSRNOT00000020570,ENSRNOT00000078518 1 2 2 80 18 51568426 51568444 GGAAAGCTCTTTGTGTCGG 59 51568485 51571806 GGCTGGGATAGAGATCTTAGTG 60 NA Rattus norvegicus 81 Tmem150a ENSRNOG00000061100 ENSRNOT00000079415 1 1 1 80 4 100218833 100218851 ATCACGGGCATATGGACTG 60 100219292 100219578 ATCATTGTAGGACCAGTTCTCC 60 NA Rattus norvegicus 81 Coq4 ENSRNOG00000026691 ENSRNOT00000038602 3 1 1 81 3 8356113 8356131 CCAGAGATACCGTGAGGTG 59 8356174 8356669 CTTTACCACAACTTCTCCGAG 59 NA Rattus norvegicus 81 Vac14 ENSRNOG00000017219 ENSRNOT00000023383 1 1 2 80 19 41014739 41014757 AATATCGTCAAAGTGGCCC 58 41013831 41014695 GTCAGCAGCCAACTTACTC 59 NA Rattus norvegicus 81 Rps18 ENSRNOG00000028505 ENSRNOT00000037499 1 1 1 122 20 5442476 5444964 CACTGCCATTAAGGGTGTG 59 5445050 5445068 ATGATGGTGATCACACGCT 60 NA Rattus norvegicus 81 Dusp23 ENSRNOG00000022143 ENSRNOT00000030449 3 1 1 69 13 91019616 91019634 TTTGTGAAGATCGTGGACG 58 91018825 91018843 CAAAGCCTAGAGCACAGTG 59 NA DesignNoJunction Rattus norvegicus 81 Ndufb9 ENSRNOG00000009364 ENSRNOT00000012616 2 1 1 87 7 98816560 98816579 TGAGAAAGCAGTGTATCCTG 57 98816629 98819205 CTGTTTAACCTCCCGATCC 58 NA Rattus norvegicus 81 Slc4a2 ENSRNOG00000014347 ENSRNOT00000019666 3 1 1 80 4 7270579 7270710 ATGTCTGACAAGCAATTCCA 58 7270518 7270537 CAGGAAGGCATTGATAGCAG 59 NA Rattus norvegicus 81 Qrfp ENSRNOG00000046473 ENSRNOT00000073731 3 1 1 70 3 10036558 10036576 ACATCGGAGCCAGAATGAG 60 10036610 10036628 CCGTGGACTTTGAACTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mthfr ENSRNOG00000008553 ENSRNOT00000011384 1 1 1 80 5 164853703 164856612 CTATCCAGGGCTACACCTC 59 164856655 164856674 CGATCACATCCTTGATCGTC 59 NA Rattus norvegicus 81 Mir3579 ENSRNOG00000035473 ENSRNOT00000053596 1 1 1 60 6 133860546 133860570 CTTTGATAATGAGAAGATGTGGACC 60 133860510 133860530 ATAGAACATGCGCTACTTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr395 ENSRNOG00000048909 ENSRNOT00000045037 2 1 1 60 3 15689014 15689035 CTATGTCTGAGTTCATCCTCCT 59 15689053 15689074 GAGTACATGCCTTGTTCTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtf2e1 ENSRNOG00000026008 ENSRNOT00000042864 1 1 1 80 11 66083157 66083176 CTTCAAATGTCCTGTCTGCT 58 66083219 66096175 CGGAAAGTTCCTGTCATGG 59 NA Rattus norvegicus 81 Polr3e ENSRNOG00000016960 ENSRNOT00000040963 3 1 1 80 1 190872528 190872547 TCCTAAGGATTCTTCCAGCC 59 190872587 190873825 AACTTCCACATGACAAAGTCTC 59 NA Rattus norvegicus 81 Abcc9 ENSRNOG00000036960 ENSRNOT00000067489,ENSRNOT00000055540 3 2 2 80 4 176841435 176842562 ATCATCGACCAACATATCCC 57 176841374 176841392 GATCATCCCAATAGCCGAC 58 NA Rattus norvegicus 81 Slc22a4 ENSRNOG00000046195 ENSRNOT00000058907 2 1 1 80 10 39336805 39336826 CCACAATAACGATGATGTCTGG 60 39335137 39335166 CGTGATTAGGAACATTAGACAGAG 59 NA Rattus norvegicus 81 Trappc4 ENSRNOG00000011904 ENSRNOT00000088471,ENSRNOT00000016145 2 2 2 80 8 48725160 48726452 CTCTATGTTCCACTCGCTC 58 48725098 48725116 GTTTCCAGCATCTCAATGC 57 NA Rattus norvegicus 81 Cdc42ep4 ENSRNOG00000028946 ENSRNOT00000048264 3 1 1 60 10 102246935 102246953 TCAATGAGAAGGAAGCCAC 58 102246893 102246911 CTGGATGACAAGCTCTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pex19 ENSRNOG00000057116 ENSRNOT00000085377 1 1 2 80 13 90521523 90522246 CTTATGCAGCAGTTACAGGAC 59 90527711 90527729 CAAAGACCCTGAAGGTCCA 59 NA Rattus norvegicus 81 Tmem144 ENSRNOG00000010081 ENSRNOT00000013499,ENSRNOT00000078610 1 2 2 80 2 178594131 178597008 GCCAGCCAGTATGATTTAGAC 59 178594071 178594090 GTAGGCCACAAAGTAGACTG 58 NA Rattus norvegicus 81 Fhl5 ENSRNOG00000007680 ENSRNOT00000046595 2 1 1 95 5 39571659 39574805 CTGTAAGAAGGTGATAACTTCTGG 59 39571587 39571605 TAAAGCTCTTTCCTGCAGC 58 NA Rattus norvegicus 81 Mageb4 ENSRNOG00000022806 ENSRNOT00000004132 3 1 1 135 X 61104504 61104641 ACGGGAAACCTGATTCCTG 60 61104387 61104405 CTGAACTTCTGGGACCTCC 59 NA InUTR Rattus norvegicus 81 LOC100363193 ENSRNOG00000038299 ENSRNOT00000058309 3 1 1 80 X 54294640 54294658 GACCCAATGGTACTTGAGG 58 54294702 54295349 CAATCCATTGGCTACAGGG 58 NA Rattus norvegicus 81 Bola1 ENSRNOG00000021185 ENSRNOT00000028767 2 1 1 164 2 198338788 198339079 GTACAAAGCGGATGCTAAGTG 60 198338644 198338662 GCAGTTCCAGTACCTCAGG 60 NA InUTR Rattus norvegicus 81 Echs1 ENSRNOG00000018522 ENSRNOT00000025446 1 1 1 80 1 212575547 212576177 CAATGGCTATGCTCTTGGTG 59 212575486 212575504 CCAAACTGGGCTTTCTCAC 59 NA Rattus norvegicus 81 Rn60_X_0588.2 ENSRNOG00000051220 ENSRNOT00000076131 2 1 1 124 X 57992125 57992143 ATTCCATTACAAGGTGCGG 58 57992009 57992028 CTCTGTCCTCATCTAGACCT 57 NA DesignNoJunction Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000079794 1 1 10 62 18 30020243 30020261 AGTGTTCCTCCTGGTTTGG 60 30020284 30185398 GGGATTCTCAAAGATTTCTTGC 58 NA DesignNoJunction Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000079794 2 1 10 137 18 30020168 30020186 TACTCTCAGCAAAGGAGGC 59 30020284 30185398 GGGATTCTCAAAGATTTCTTGC 58 NA DesignNoJunction Rattus norvegicus 81 Lonp1 ENSRNOG00000046502 ENSRNOT00000074253 3 1 1 80 9 10436519 10437263 TCTGAATTCAATGTCACTCGC 59 10437303 10437323 GTCTAAGTTCTCATCGCTCTG 58 NA Rattus norvegicus 81 Rgl2 ENSRNOG00000000474 ENSRNOT00000000554 1 1 1 82 20 5460837 5460856 CTATGACCTCCGACCTAACC 59 5460663 5460792 ATACACGGTGACTCTGAGC 59 NA Rattus norvegicus 81 Zfp553 ENSRNOG00000017837 ENSRNOT00000023995 3 1 1 60 1 198682757 198682776 CTACAAGTGTGGTGTCTGTG 59 198682798 198682817 TTGATGTTTGATTCGGGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mtx1 ENSRNOG00000042977 ENSRNOT00000086683,ENSRNOT00000064715 3 2 2 80 2 188527629 188527647 TGGAGCTATTCTGCTGGTC 59 188526666 188527586 ATCTGGTATAGGTCAGCACG 59 NA Rattus norvegicus 81 Gcat ENSRNOG00000055408 ENSRNOT00000078383 3 1 1 82 7 120267328 120267346 TTGCTGCTCAATATGGTGC 59 120267392 120267501 ATCTGTGCCTCTTCCAGTG 59 NA Rattus norvegicus 81 Cln3 ENSRNOG00000019103 ENSRNOT00000025898 3 1 1 80 1 197997187 197997362 AGGATTCTGAGAGGGAGGA 59 197997125 197997143 CCGCATTCTTCCAAAGGAC 59 NA Rattus norvegicus 81 Bnip3 ENSRNOG00000017243 ENSRNOT00000023477 1 1 2 80 1 211255808 211255827 CCAGACACCACAAGATACCA 60 211251539 211255765 TCTTCCTCAGACAGAGTGC 59 NA Rattus norvegicus 81 Necab1 ENSRNOG00000007256 ENSRNOT00000009718 3 1 1 80 5 28707528 28707546 AGATGGAGTTCTCAGTGGA 57 28658862 28707485 TCTGTGTCAAGATTGTTGGT 57 NA Rattus norvegicus 81 Cyct ENSRNOG00000024457 ENSRNOT00000050355,ENSRNOT00000008301,ENSRNOT00000045862 1 3 4 80 3 62902414 62902432 TCGGATGGTTCTCTACCAC 59 62886677 62902370 AACCCAGCAGTAGTTAGCA 59 NA Rattus norvegicus 81 Cyct ENSRNOG00000024457 ENSRNOT00000050355,ENSRNOT00000008301,ENSRNOT00000045862 3 3 4 80 3 62902463 62902964 ATCGACTATGAGACCCTGTG 59 62902402 62902422 ATGTCTCCAGTTGTGGTAGAG 59 NA Rattus norvegicus 81 AABR07030494.1 ENSRNOG00000049929 ENSRNOT00000074987 3 1 1 62 10 90569383 90569401 GTTATGGCTGGGATCATCG 58 90569339 90569361 TAGGGAGTTATCGCTAAGTACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nox3 ENSRNOG00000016490 ENSRNOT00000022148 3 1 1 80 1 44566878 44570254 GGATGAATACCAGGCAATTCAC 60 44566819 44566839 AAGGTCTTCTGCTTTAAGCCT 60 NA Rattus norvegicus 81 Snx24 ENSRNOG00000017488 ENSRNOT00000023507 1 1 1 80 18 48300206 48346221 AAACCTATTTACAGGCCGTC 58 48346262 48346282 GCAAGTGTCTTACATTGAGGA 58 NA Rattus norvegicus 81 Serpinb1a ENSRNOG00000016581 ENSRNOT00000059854 3 1 1 84 17 32905859 32905877 TGGAGCATCTCACACTCTG 59 32905922 32906935 AGTTGAAGTCAAGAACTCAGGA 59 NA Rattus norvegicus 81 Rptn ENSRNOG00000018679 ENSRNOT00000025249 2 1 1 81 2 193724371 193725096 GGAGACATCCTTCGGAGAC 59 193725137 193725159 CATATCCATTTCTATCTCGGTCC 58 NA Rattus norvegicus 81 RGD1563962 ENSRNOG00000045814 ENSRNOT00000073716 2 1 1 135 2 165805259 165805277 AGAACGAGCTAGTGTCAGC 60 165815083 165815101 GGCTTCTTCCTCATGGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Papl ENSRNOG00000047901 ENSRNOT00000071691 1 1 1 80 1 85145917 85145936 TTCTCCACTATGGTCGTCAC 59 85145976 85146072 CCCGATTCTTATTGGCTTTCTG 60 NA Rattus norvegicus 81 Erlec1 ENSRNOG00000007283 ENSRNOT00000050321 2 1 1 80 14 115337196 115338647 GAGAAGTCAAATGAGATTCCCAC 60 115337138 115337157 TGTACCATTTCCCATTCCCA 59 NA Rattus norvegicus 81 Fbxw9 ENSRNOG00000004212 ENSRNOT00000005581 2 1 1 80 19 26174187 26174205 GTGATCGAGTCACCTGGAG 60 26174245 26175845 AGTCAAAGTTCTCCTCTTCTACC 60 NA Rattus norvegicus 81 Hist1h4b ENSRNOG00000054017 ENSRNOT00000080490 3 1 1 141 17 44522346 44522364 TTCCTGGAGAACGTGATCC 59 44522467 44525635 TTCACTTTGTTTCTTAGCCGC 60 NA InUTR Rattus norvegicus 81 Nprl3 ENSRNOG00000020541 ENSRNOT00000089435,ENSRNOT00000066430 3 2 2 82 10 15656870 15656889 CCGTCATCATCTATCCACTG 58 15656933 15657320 AGCTAGTGGAGAGTACAGAC 58 NA Rattus norvegicus 81 Olr315 ENSRNOG00000045841 ENSRNOT00000045652 2 1 1 60 1 213452482 213452500 TGTGTTCTGTGCCTATGTC 58 213452522 213452542 GGAAACTTTGCTTCTTTCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpatch4 ENSRNOG00000018969 ENSRNOT00000056923 3 1 1 80 2 187420052 187422126 ATCAGAAGTTTGTGAAGACAGC 59 187422167 187422185 CAACATCACTGCAGCTCTC 59 NA Rattus norvegicus 81 Nfs1 ENSRNOG00000045686 ENSRNOT00000072945 2 1 1 80 3 151670270 151670935 AACAAGAGATGGAGTACGACC 60 151670210 151670234 CTGGAAGGTTCTTCATTATCTTCTG 60 NA Rattus norvegicus 81 Nradd ENSRNOG00000020936 ENSRNOT00000028416 1 1 1 97 8 118891401 118892279 GTGTATTCAGATACAGCCCTG 58 118891324 118891343 AATAGGGAGGAGGTATTGGG 58 NA Rattus norvegicus 81 Rn60_X_0639.3 ENSRNOG00000051322 ENSRNOT00000076936 1 1 1 60 X 63824567 63824585 TACCCATTCTCTTCCACGA 58 63824609 63824627 AGGCTACATCTGAATGGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909885 ENSRNOG00000012079 ENSRNOT00000016117 1 1 1 60 8 42779647 42779668 ATCTATGTGTTGACAGTAGTGG 58 42779689 42779707 GTGGGCTGACTATGATGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slpil2 ENSRNOG00000029508 ENSRNOT00000043470 2 1 1 106 3 160738179 160738197 AGAGTGCAGTACTGACTGG 59 160737610 160738109 TCTTCTTCACTGGTCTGGG 59 NA Rattus norvegicus 81 Tmem247 ENSRNOG00000046926 ENSRNOT00000074516 1 1 1 80 6 10483533 10484147 CTTCTTTGGATGCAGAACCC 59 10484190 10484208 CTGGGCAATCTCTGTCCTC 60 NA Rattus norvegicus 81 Tmem247 ENSRNOG00000046926 ENSRNOT00000074516 3 1 1 81 6 10483532 10484146 GCTTCTTTGGATGCAGAACC 60 10484190 10484208 CTGGGCAATCTCTGTCCTC 60 NA Rattus norvegicus 81 Fgf17 ENSRNOG00000012912 ENSRNOT00000017723 2 1 1 146 15 52331882 52332076 CCTAACCTTACCCTGTGCT 59 52328873 52328891 CTGGTACTCACGGATTTGC 59 NA Rattus norvegicus 81 Vwa9 ENSRNOG00000012469 ENSRNOT00000016798 2 1 1 80 8 70460634 70463112 TAGCACTCAACAAAGAAGGT 57 70463152 70463173 CAATCTGATTGGCTGAATTCTC 58 NA Rattus norvegicus 81 Rhpn1 ENSRNOG00000007597 ENSRNOT00000076614,ENSRNOT00000076797,ENSRNOT00000010065 2 3 4 117 7 116747595 116747613 ATGACTCGAGGAGAGGGAG 60 116747778 116747796 TGTAGTCACCCTCCTTCAG 58 NA DesignNoJunction Rattus norvegicus 81 Retnlg ENSRNOG00000001943 ENSRNOT00000002673 2 1 1 80 11 54514358 54514381 GTGAATACTGATGGAACCTTAGAG 59 54513847 54514319 GGAGGGACAGTTATCTCGA 58 NA Rattus norvegicus 81 Rcn1 ENSRNOG00000013452 ENSRNOT00000018074 3 1 1 87 3 95413251 95414170 TACTACCTGGGAAACCCTG 58 95413182 95413200 TAAACCTCCTCTCATCCCG 58 NA Rattus norvegicus 81 Nlrc4 ENSRNOG00000005810 ENSRNOT00000007655 3 1 1 87 6 22184310 22186911 CTCTACAGGGACTGATCGG 59 22186962 22186980 AGACTGATGTACGCATCCC 59 NA Rattus norvegicus 81 Pus10 ENSRNOG00000054151 ENSRNOT00000083707,ENSRNOT00000083763 3 2 2 80 14 108446304 108446853 GACTGCCATTTCCTAGGTG 58 108448409 108448428 GGCCATTCTGGTGAATACTG 59 NA Rattus norvegicus 81 Arntl2 ENSRNOG00000001830 ENSRNOT00000077619,ENSRNOT00000084207,ENSRNOT00000055473 1 3 3 80 4 181145156 181145582 CACAAAGCAGTTCTGCAGAG 60 181145625 181145643 AGTCACAAAGGAGCCATCC 60 NA Rattus norvegicus 81 AABR07007130.1 ENSRNOG00000032668 ENSRNOT00000047883 1 1 1 60 1 282492408 282492426 AAGCCCTATGAATGCAACC 58 282492366 282492385 GCCTTTGAAGATTACTGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slco2a1 ENSRNOG00000009005 ENSRNOT00000091275,ENSRNOT00000012162 2 2 2 80 8 111564425 111564444 CACATTCCTCAACAAGTTCC 57 111564486 111565552 AGATTTACAGCACCGATGAG 58 NA Rattus norvegicus 81 Noto ENSRNOG00000037863 ENSRNOT00000057516 1 1 1 81 4 117206723 117207721 CAGACTCACAGGGTCAGAG 59 117207765 117207784 GGTATTGTGGTCCTGAAGGT 60 NA Rattus norvegicus 81 AABR07044581.1 ENSRNOG00000030677 ENSRNOT00000046763 2 1 1 80 20 11498050 11498069 ATGGCTTCAGGATTTCTGTC 58 11497972 11498009 CATTGATGAAGAGGTCCATGG 59 NA Rattus norvegicus 81 Spp1 ENSRNOG00000043451 ENSRNOT00000067875,ENSRNOT00000075989 3 2 2 80 14 6674564 6675266 TCTGATGAACAGTATCCCGA 58 6674503 6674521 CTTGATAGCCTCATCGGAC 58 NA Rattus norvegicus 81 AABR07052585.2 ENSRNOG00000023227 ENSRNOT00000068494 3 1 1 80 3 63567674 63567694 CGGAAAGTACACAGTTAAGGC 59 63567104 63567632 TCCACTAGAGGAAGCACTG 58 NA Rattus norvegicus 81 Cyp4f40 ENSRNOG00000043344 ENSRNOT00000066654 2 1 1 80 7 14873451 14873469 ATCAGCCTCATGACCTTGG 60 14873513 14874601 GTACTCACTGGGCTTCTCC 60 NA Rattus norvegicus 81 Mir425 ENSRNOG00000035484 ENSRNOT00000053607 3 1 1 61 8 117354825 117354846 CTTTGGAATGACACGATCACTC 60 117354868 117354886 CACGATATTCCCGATGGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039435.1 ENSRNOG00000046897 ENSRNOT00000045534 1 1 1 80 X 76696295 76697038 CATCGAGATCAAAGAGGAAACC 59 76696236 76696255 TTACATTCTCATCCGTGGGT 59 NA Rattus norvegicus 81 Nusap1 ENSRNOG00000004921 ENSRNOT00000052312,ENSRNOT00000081934 3 2 2 80 3 111422566 111422584 TCCTTCAAGTACAGCGACC 59 111422626 111427218 TCTTAACAACTTGTCTGCCCT 60 NA Rattus norvegicus 81 Lfng ENSRNOG00000001250 ENSRNOT00000001682 1 1 1 80 12 16125776 16125794 CCACCAGAAAGTTTCACCG 59 16121726 16125735 AGATGAATGTCATCTCCTTGTG 58 NA Rattus norvegicus 81 Zbtb9 ENSRNOG00000026799 ENSRNOT00000000574 3 1 1 90 20 5566663 5566897 AAGGTGTGACCCTAGTCTC 58 5566951 5566969 CAAAGGAGTCGAAGCATCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tra2a ENSRNOG00000009156 ENSRNOT00000012325 3 1 1 80 4 78910087 78910106 TATGATCAGCGAACTGGGAG 59 78908397 78910046 TTCCATAGCCTCCTTAGAGTC 59 NA Rattus norvegicus 81 Ccdc65 ENSRNOG00000058916 ENSRNOT00000090760 1 1 1 80 7 140395148 140395168 GAACTTAGTCAAACTCACCCT 58 140395209 140396436 AGGATCTTCTCACCCTTCTC 58 NA Rattus norvegicus 81 Nxf1 ENSRNOG00000019069 ENSRNOT00000026033 2 1 1 80 1 224964181 224964201 GTTGTTCTAAACCGTAGAGGC 59 224964240 224964367 GTTCAAAGACAATAGCTCAGGA 59 NA Rattus norvegicus 81 Spop ENSRNOG00000004686 ENSRNOT00000077625,ENSRNOT00000006230 2 2 2 80 10 83290706 83293636 CTGAAATGGTGTTTGCGAG 58 83293680 83293698 GACCAACAACAGGTAGAGC 58 NA Rattus norvegicus 81 Cpb2 ENSRNOG00000010935 ENSRNOT00000014909 2 1 1 80 15 57312698 57314247 AACTTACGAGGTTGTTCTCTG 58 57314288 57314307 GCATTCACAAAGAAGTGGAC 58 NA Rattus norvegicus 81 G2e3 ENSRNOG00000004232 ENSRNOT00000005670 2 1 1 80 6 72119222 72119242 TCACAATCCACAAGTTACCAG 58 72119282 72119503 CAGACTTTCCATCCTCTACAG 58 NA Rattus norvegicus 81 LOC501406 ENSRNOG00000046353 ENSRNOT00000070999,ENSRNOT00000071758 1 2 2 80 1 38585742 38585760 TGGTCACATTTCTGGAGCA 59 38583897 38585701 GTTTCAATCCTAGATGGATGGC 59 NA Rattus norvegicus 81 Tmem95 ENSRNOG00000043507 ENSRNOT00000065524 1 1 1 80 10 56488061 56488079 TATTGGCAATGGCTTCGGA 60 56487788 56487921 TAGGAACAACGGGCATACAG 60 NA Rattus norvegicus 81 Defb20 ENSRNOG00000023384 ENSRNOT00000031922 1 1 1 80 3 147952919 147955270 TACTTGCAGACAGTGTGCA 60 147955314 147955332 TCTCCACTAGTCTGCATCG 59 NA Rattus norvegicus 81 Lin7b ENSRNOG00000020746 ENSRNOT00000028164 2 1 1 86 1 101358878 101359548 GTGAATGGTGTGAGTGTGG 59 101358810 101358828 CACCACCAGTTTCACTGAG 58 NA Rattus norvegicus 81 Sfxn3 ENSRNOG00000015442 ENSRNOT00000021171 1 1 1 80 1 264799055 264799073 CTTGATTGGTCGCATGTCG 60 264799115 264799431 GGAGTCTTCCTGTAGAAGGTG 60 NA Rattus norvegicus 81 AABR07038567.1 ENSRNOG00000047748 ENSRNOT00000075300 1 1 1 97 X 55332598 55332616 TCTGGAGCAGAAGATTCCA 58 55332677 55332696 ATTGAGTCCTGGATTTCCTG 57 NA DesignNoJunction Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000076397 3 1 5 107 7 120763793 120764149 CTCTTCCAGAGGTCCTGAG 59 120763704 120763723 CACTGAAGCTGTCTTCAGAC 59 NA InUTR Rattus norvegicus 81 Tmco5a ENSRNOG00000005100 ENSRNOT00000006809 1 1 1 80 3 108546570 108546590 AGAATAGATGAAGCCAACCAG 58 108546632 108547073 GATCTCATGTTCCAGCCTC 58 NA Rattus norvegicus 81 Fam117a ENSRNOG00000004417 ENSRNOT00000005939 2 1 1 80 10 83192361 83192379 CTAGAAGGGCTCAACCAGG 60 83192421 83194059 AACCTCAAGTATCCTCAGCAG 60 NA Rattus norvegicus 81 Slc16a5 ENSRNOG00000023476 ENSRNOT00000032016 1 1 1 113 10 104024144 104030738 AGGACTTATCACAGGCCTG 59 104030815 104030833 ATTCCTATGGAGGCCAGTG 59 NA Rattus norvegicus 81 Il22ra1 ENSRNOG00000027976 ENSRNOT00000031512 3 1 1 81 5 154082895 154083717 CAGTGTGGAATATAAGAAGTACGG 59 154083757 154083775 GTTGCAGAACTTCTGGGTG 59 NA Rattus norvegicus 81 Rps10 ENSRNOG00000000490 ENSRNOT00000033907 1 1 1 62 20 7217528 7219153 CAAAGGTCCAGAGGGTGAG 60 7217484 7217502 TAGGTGTCTCTGTCTGCCT 60 NA DesignNoJunction Rattus norvegicus 81 Mettl22 ENSRNOG00000002714 ENSRNOT00000003700 2 1 1 83 10 7237363 7237381 AGATGTCCACCTGTACACC 59 7234458 7237316 AACTGGGACAGGAAGACTG 59 NA Rattus norvegicus 81 Ptbp3 ENSRNOG00000016334 ENSRNOT00000022107,ENSRNOT00000089251 3 2 2 80 5 76678301 76678319 CTGGCTCAAAGAACTTCCA 58 76675409 76678258 CCATTGTAACAGAAGGAGGA 57 NA Rattus norvegicus 81 Tlx1 ENSRNOG00000016120 ENSRNOT00000021714 1 1 1 98 1 264893924 264896004 AAGGACAGGTTCACAGGTC 59 264896066 264896084 TTCCAGCTCACAGATCTGC 60 NA DesignNoJunction Rattus norvegicus 81 LOC294154 ENSRNOG00000038883 ENSRNOT00000059426 2 1 1 80 20 7347021 7363747 CTATGGAGATGTCATCTGGGT 59 7346961 7346979 TCAAAGGATGACAGCTGCT 59 NA Rattus norvegicus 81 LOC100910438 ENSRNOG00000016622 ENSRNOT00000022525 3 1 1 80 X 82408675 82408695 CAATTGAAACAGACTCTGGCT 59 82408108 82408635 ACTCAATGACCTGTTGAACAC 59 NA Rattus norvegicus 81 Brwd3 ENSRNOG00000002291 ENSRNOT00000050336 3 1 1 80 X 79835566 79835585 TGAGCCTCATTTATGAACGG 58 79834541 79835523 GTTGTTGAGCTACTGGGTG 59 NA Rattus norvegicus 81 Ankrd61 ENSRNOG00000001048 ENSRNOT00000001382 1 1 1 114 12 12756634 12756653 GAAGACTGCGACACAATCAG 59 12756730 12757856 AGATAGGCTGTGTCTGCTG 59 NA Rattus norvegicus 81 Adora2a ENSRNOG00000001302 ENSRNOT00000001759 1 1 1 121 20 14266977 14273835 TTCCACTCCGGTACAATGG 59 14266874 14266892 CTGACTGCAGTTGTTCCAG 59 NA Rattus norvegicus 81 Fhl3 ENSRNOG00000007541 ENSRNOT00000010007 3 1 1 111 5 142693701 142693720 ATACATCCAGACAGACAGCG 60 142693792 142693908 AAACAGTTCCCTTGAATCGTG 59 NA Rattus norvegicus 81 Mmd2 ENSRNOG00000001113 ENSRNOT00000060608 3 1 1 81 12 14062218 14063837 CTTCCATGAACGGTACAAGC 59 14063881 14063899 CATGGAGAGGATGACCAGG 59 NA Rattus norvegicus 81 Gfm1 ENSRNOG00000012873 ENSRNOT00000017608 3 1 2 80 2 164627248 164627269 TAAAGTCCACTTTGACACAGAG 58 164627308 164628461 ATTCTCTGAGCATAGATCTCAGG 59 NA Rattus norvegicus 81 LOC500124 ENSRNOG00000010594 ENSRNOT00000014331 3 1 1 81 4 80357078 80358967 CGACTCTTTGTTACCCAAACC 60 80354370 80354393 CGTATGATAGGGATGTTCAATTGG 60 NA Rattus norvegicus 81 Dhx57 ENSRNOG00000054272 ENSRNOT00000090688 2 1 1 80 6 2953549 2956103 CCAGATGAAACAGGCTTCC 59 2953487 2953507 GTTTCTCTTTCTTCCCAAGCA 59 NA Rattus norvegicus 81 Rpp40 ENSRNOG00000016226 ENSRNOT00000068617,ENSRNOT00000021877 3 2 2 80 17 29646264 29646283 GTCTGTGTACAATCACAGGT 58 29646323 29647504 GTTCATCAAAGTAGTGACACAG 57 NA Rattus norvegicus 81 Prss3 ENSRNOG00000013382 ENSRNOT00000018042 3 1 1 80 4 69266233 69267283 CTACAAATCCCGAATTCAGGT 58 69266173 69266191 GCTGCATCAATGAATTGCT 57 NA Rattus norvegicus 81 LOC102546354 ENSRNOG00000030932 ENSRNOT00000083788 3 1 2 102 1 88361689 88361707 TTGCTTGTCTGAAACCCAG 58 88353112 88361623 TCTGGACTCCAGATCTGAG 58 NA InUTR Rattus norvegicus 81 Dmd ENSRNOG00000046366 ENSRNOT00000091467,ENSRNOT00000034372,ENSRNOT00000081061 1 3 4 80 X 53493249 53504941 CAAACTTCAGAATCTATGGGTGAG 60 53504977 53504998 CTCCATCACTTCTTCTAACCCT 59 NA Rattus norvegicus 81 Dmd ENSRNOG00000046366 ENSRNOT00000058357 2 1 4 80 X 53054457 53054476 CTGTTACAAAGACGTCTGGA 58 53054517 53062535 CAAATGGGACCGAATATTGAG 57 NA Rattus norvegicus 81 RGD1561276 ENSRNOG00000047700 ENSRNOT00000041791 2 1 1 60 3 102664636 102664658 CTGCTTTACACAGATATTCCTCC 59 102664675 102664696 TACAAGGGTTACCATCTCACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp711 ENSRNOG00000022391 ENSRNOT00000046364 3 1 1 80 X 84089418 84089437 TTGAGATTCAGCTTGAGGAC 58 84089477 84090249 CTCGTCTTTCATCATATGATGC 58 NA Rattus norvegicus 81 Chac1 ENSRNOG00000014387 ENSRNOT00000019392 3 1 1 81 3 111161533 111162314 CTTGAAGATCATGAGGGCTG 59 111162358 111162376 TCAGGTACTTCAGTGCCTC 59 NA Rattus norvegicus 81 Gpalpp1 ENSRNOG00000001037 ENSRNOT00000001371 1 1 1 80 15 58162572 58164843 TTCTTCAACTCAGAGGAAGC 58 58162511 58162530 ATAGTCAACTGGTCCTTTCG 57 NA Rattus norvegicus 81 RGD1304728 ENSRNOG00000014027 ENSRNOT00000018808 3 1 1 80 10 58733667 58739767 CACGAAGAAAGAAATGACCAG 58 58733607 58733627 TGTCTTGGTGATCTTGATTGG 58 NA Rattus norvegicus 81 AABR07027457.1 ENSRNOG00000048067 ENSRNOT00000074220 2 1 1 80 17 31916118 31916515 GATTCCTGCTTCCAGAGGT 59 31916056 31916076 ATAGAGACTTGACCTCCAAGG 59 NA Rattus norvegicus 81 Matn3 ENSRNOG00000056141 ENSRNOT00000084212 1 1 1 80 6 34079578 34082500 GTGTTCAGCCATTGATAAGTG 58 34082542 34082562 TGGTAAGAACCATTTCTGTCG 58 NA Rattus norvegicus 81 Smim20 ENSRNOG00000051190 ENSRNOT00000084451,ENSRNOT00000091794 2 2 3 60 14 60057921 60057939 AGTGCTTCCCTTAACTCCC 59 60057879 60057902 CACAAGGTACTTCTTAATGGTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r27 ENSRNOG00000036690 ENSRNOT00000054959 2 1 1 93 10 109728548 109728566 ATGGTGCTGACATTCACCA 60 109728193 109728494 ATGAGATACCTGGCTATGTCAG 59 NA Rattus norvegicus 81 Stk17b ENSRNOG00000012502 ENSRNOT00000016856 2 1 1 82 9 60416172 60420826 CGAAAGAACTTGGGAGAGGA 60 60416109 60416129 GAATTTGGCAGCATACTCCTG 60 NA Rattus norvegicus 81 Zfp9 ENSRNOG00000006726 ENSRNOT00000065579,ENSRNOT00000079053,ENSRNOT00000009095 3 3 3 133 4 150519571 150520279 AGGAGCTGTGGTGATAAGC 60 150518939 150518958 CAGTCATAGCTTTCATGCCG 60 NA Rattus norvegicus 81 Cd80 ENSRNOG00000001527 ENSRNOT00000089625,ENSRNOT00000002089 1 2 2 80 11 64837652 64837671 GTTCAAAGGTACGAAGGAGG 58 64834628 64837609 GGTAGGGAAGTCAGCTCTG 59 NA Rattus norvegicus 81 Pla2g12a ENSRNOG00000057470 ENSRNOT00000087287 1 1 2 104 2 235312003 235321204 GTACAAGTGTAGCGACGGA 60 235321270 235322661 CCAATGTTCAGATGAACACCA 59 NA Rattus norvegicus 81 Colgalt1 ENSRNOG00000023317 ENSRNOT00000024866 2 1 1 80 16 20041894 20045043 ACATTCTGTTTGTGGACAGC 59 20045086 20045104 CCACTGTCTTGTTCTCAGC 59 NA Rattus norvegicus 81 Plcb3 ENSRNOG00000021150 ENSRNOT00000028720 2 1 1 80 1 222220842 222220860 CTTGGAAATCTTCGAGCGG 59 222220248 222220799 TTAGCACCTATCTCCAGCAG 59 NA Rattus norvegicus 81 Lvrn ENSRNOG00000003950 ENSRNOT00000039733 1 1 1 80 18 40941372 40948702 CAGAGACTGCAATACCTCCT 59 40948744 40948763 AGTCCCAGTCCTTATTGCTC 59 NA Rattus norvegicus 81 Rn60_6_1120.1 ENSRNOG00000000345 ENSRNOT00000000387 3 1 1 60 6 103808614 103808632 TACTCCAGAGATGTCCTCC 57 103808572 103808591 CTACCAAGTTGAGAACCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc5a4 ENSRNOG00000049734 ENSRNOT00000072183 2 1 1 80 20 13415255 13416525 CCAGGACTGAAGAAGACCA 59 13415193 13415211 CTCTTTGCAAACCACAGCA 59 NA Rattus norvegicus 81 Slc5a4 ENSRNOG00000049734 ENSRNOT00000072183 3 1 1 81 20 13442933 13442953 TGATTTACACTGACACCCTCC 60 13440753 13442890 CCGACTTCAACAAATGCGT 60 NA Rattus norvegicus 81 Zgrf1 ENSRNOG00000036980 ENSRNOT00000014695 1 1 1 80 2 231923058 231925622 CCTGTTAGCAATGTCTCAGTC 59 231925664 231925682 CTTGTAATGGCTGGTGGGA 60 NA Rattus norvegicus 81 Gml ENSRNOG00000025641 ENSRNOT00000035496 3 1 1 80 7 116056277 116058785 ATCGCTATACGTGTGACCA 59 116056215 116056236 ATGCTGTTTGTACACAAAGGAG 60 NA Rattus norvegicus 81 Nr2f6 ENSRNOG00000016892 ENSRNOT00000022898 2 1 1 70 16 19776953 19776971 AAGAGTTTCTTCAAGCGCA 58 19774404 19774422 ATCTGACAGTCACGGTTGG 60 NA DesignNoJunction Rattus norvegicus 81 Pth2r ENSRNOG00000015259 ENSRNOT00000021099 3 1 1 80 9 72153330 72155189 TCCTTCCAGGGATTCTTCG 59 72157273 72157291 AGTCCAGGTCTTCTTCACC 59 NA Rattus norvegicus 81 Hs3st1 ENSRNOG00000010598 ENSRNOT00000075975,ENSRNOT00000014078 1 2 2 60 14 75881109 75881129 CAGAAAGTCGAAAGGTTCCTC 59 75881149 75881169 TAAAGTAGAAGTTCGAGGCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defb41 ENSRNOG00000038760 ENSRNOT00000059213 1 1 1 80 15 46179832 46182132 ATGATGCCGAGAGGAAAGG 60 46182175 46182194 CGATACGTCTTTGCATACCC 59 NA Rattus norvegicus 81 Pld1 ENSRNOG00000028156 ENSRNOT00000039296,ENSRNOT00000039308,ENSRNOT00000091545 3 3 3 80 2 113747183 113747204 AGCAACTGGAAGATTACTTGAC 59 113747244 113756629 CATCAAGGAACTCTGTCGTG 59 NA Rattus norvegicus 81 Wdr64 ENSRNOG00000038083 ENSRNOT00000065706 1 1 1 80 13 93850830 93851998 GAATGTGTAAGGAGATCAAGTCAG 59 93852037 93852055 CTTGCTACTCTGTGGACCC 60 NA Rattus norvegicus 81 Olr1319 ENSRNOG00000053365 ENSRNOT00000083262 3 1 1 60 8 43607369 43607387 GAGAGCAGATTCAAAGCCT 58 43607410 43607429 AGAAGACAGCCACAGAAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cul3 ENSRNOG00000015633 ENSRNOT00000021528 3 1 1 80 9 86069108 86069684 AGTTGTAGACAGAGGAGCA 58 86069046 86069066 TCCTCATAGACTGATCTTCCT 57 NA Rattus norvegicus 81 Armc7 ENSRNOG00000042691 ENSRNOT00000004843 2 1 1 60 10 104036918 104036937 GGACTTATTCCTCGATTCGC 59 104036958 104051004 CCCAATAGCAAACTTGATGAG 57 NA DesignNoJunction Rattus norvegicus 81 Olr1325 ENSRNOG00000061476 ENSRNOT00000084016 3 1 1 60 8 43722595 43722613 ATGTTGCCATCTGTAACCC 58 43722635 43722655 CAGAAGCAGAGATGATGAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf8 ENSRNOG00000047171 ENSRNOT00000065629,ENSRNOT00000081715 3 2 2 80 20 8291543 8291562 TGATTTCTCGAAACCACTGC 59 8291601 8296489 CACCATTCAGACTCTTATTGTCC 59 NA Rattus norvegicus 81 Hnrnpul2 ENSRNOG00000019507 ENSRNOT00000026416 3 1 1 80 1 225019653 225020185 TGAGGCCAAGGTAACTCAG 59 225020228 225020247 TCAATAGACCACCCAACTCG 60 NA Rattus norvegicus 81 LOC100125384 ENSRNOG00000045720 ENSRNOT00000074027 3 1 1 60 1 106405980 106406000 CACAGAAATATTGCCAACCCT 59 106406021 106406040 GGTAGTCCAGCATGATACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp13 ENSRNOG00000030639 ENSRNOT00000048030 1 1 1 80 2 119264205 119264227 GAAACCTCCCAAGGATATTTGAC 60 119264264 119264997 CATGTCCCAACTTAGTCATCTG 59 NA Rattus norvegicus 81 Flrt3 ENSRNOG00000004874 ENSRNOT00000006454 2 1 1 83 3 134685277 134685296 GAGAGCAAGAGAAAGAACCT 57 134684606 134685231 ACTTCAATATCAGGGCCAC 57 NA Rattus norvegicus 81 Phf23 ENSRNOG00000017657 ENSRNOT00000024079 1 1 1 80 10 56608309 56608327 CAAGATGGAGATGGCAGCT 60 56608368 56608497 TGAGTCATCACCTGATTCTACC 59 NA Rattus norvegicus 81 Slc25a31 ENSRNOG00000038398 ENSRNOT00000058476 2 1 1 80 2 127550467 127551377 ACACTGTTAAGGGCTTATTGC 59 127551419 127551437 CAGTCGTCACGATTTGAGC 59 NA Rattus norvegicus 81 Grwd1 ENSRNOG00000021058 ENSRNOT00000056181 2 1 1 87 1 101818167 101818185 AAGAGGATGAAGAGGAGCG 59 101816045 101818116 AGCCAAGATACCCGAACTC 59 NA Rattus norvegicus 81 Dhh ENSRNOG00000053675 ENSRNOT00000087327 2 1 1 103 7 140577249 140577268 TAAGTATGGTTTGTTGGCGC 59 140576898 140577185 ATGAGTTATCAGCTTTGACCG 59 NA Rattus norvegicus 81 Impad1 ENSRNOG00000027079 ENSRNOT00000033151,ENSRNOT00000034495 1 2 2 80 5 17650787 17650806 GTACCAGCAGAAAGTGTGAC 59 17649617 17650748 GACATACTTTCGAAGATCCTCTG 59 NA Rattus norvegicus 81 LOC689618 ENSRNOG00000028533 ENSRNOT00000029558 3 1 1 92 3 171603064 171603799 TACATCAAGATTCTCCCATCG 57 171603853 171603871 CTTCTCCAAGCAGTACAGG 58 NA Rattus norvegicus 81 Rn60_X_0649.2 ENSRNOG00000051212 ENSRNOT00000076836 2 1 1 60 X 63984129 63984148 AACTTTGAGCACTACTTCGG 58 63984088 63984107 GAGCATCACTCTTTAGTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbx22 ENSRNOG00000002346 ENSRNOT00000003190,ENSRNOT00000083907 2 2 2 80 X 78773178 78773197 TGGATGCGTCAAATCATCTC 59 78773240 78774492 CTGCAGAATGATATGGCCC 59 NA Rattus norvegicus 81 Sidt1 ENSRNOG00000002013 ENSRNOT00000002759 3 1 1 80 11 61376066 61384004 TCCATCACATGAGGTTCCA 58 61388275 61388295 GTGAGACAGCCATATTTCCAG 59 NA Rattus norvegicus 81 Lrrc36 ENSRNOG00000016854 ENSRNOT00000022622 2 1 1 80 19 37407297 37409532 ATTGAAGCTCAGTTCAGATCTC 58 37409573 37409591 AGCTGTTGCTCTACATTGG 58 NA Rattus norvegicus 81 Mrpl34 ENSRNOG00000017552 ENSRNOT00000023579 2 1 1 108 16 19874113 19874295 TTGAGTGGCAGGTATCTCC 59 19874367 19874385 TCGGCTGATACTCGTTTCC 60 NA Rattus norvegicus 81 Commd9 ENSRNOG00000004755 ENSRNOT00000081984,ENSRNOT00000006628 2 2 2 81 3 91476413 91477406 AGATGAAGATCCAGGAGGAC 58 91477450 91477468 GTTTCTTTGCTCAGCTCCA 58 NA Rattus norvegicus 81 Plb1 ENSRNOG00000026037 ENSRNOT00000061176 1 1 1 80 6 25485711 25491640 CTAGAAACTCCTCCAGCCC 59 25485155 25485175 CACATTCTGTAGTTCGCTCTC 59 NA Rattus norvegicus 81 Mcidas ENSRNOG00000039588 ENSRNOT00000076278 1 1 1 80 2 44866348 44866828 CTCATTGCAGATTCGTCCTC 59 44866871 44866889 AGACGGAACATCACAAGGG 60 NA Rattus norvegicus 81 Mrpl38 ENSRNOG00000008256 ENSRNOT00000011328 3 1 1 88 10 104685181 104685199 ATTCCTTGTGGACACTGCT 59 104683315 104685015 GATGTTGGTTACCAGCCAG 59 NA Rattus norvegicus 81 Rn60_13_0803.2 ENSRNOG00000051246 ENSRNOT00000076447 2 1 1 60 13 75368045 75368064 CACCATCAACAAGAATGCTG 58 75368086 75368105 GTTCTTTCAGATCATGTGCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lyzl1 ENSRNOG00000016295 ENSRNOT00000021901 2 1 1 80 17 56255941 56256655 ATGAACTATTGGCAGGGCT 59 56255879 56255897 TCAGGAAACATCGCATCCT 59 NA Rattus norvegicus 81 Mamstr ENSRNOG00000024580 ENSRNOT00000029167,ENSRNOT00000029220 1 2 2 80 1 101625880 101626066 GAAGAGCTGACGGTCTCAG 60 101626110 101626128 CAGAAGCATCGCTTTGGTC 60 NA Rattus norvegicus 81 Mamstr ENSRNOG00000024580 ENSRNOT00000029167,ENSRNOT00000029220 3 2 2 84 1 101625821 101625839 CAAGAGTCTCCAGTCCCTC 59 101625886 101626073 CTAAGCTCTGAGACCGTCAG 60 NA Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000083622 2 1 7 131 20 2515590 2515880 AACTTCCTTTACCAGGGACC 59 2517087 2517105 CAGGTCTGTACTGTCCAGC 60 NA Rattus norvegicus 81 RGD1561197 ENSRNOG00000033366 ENSRNOT00000040244 1 1 1 80 15 67092877 67092949 CAAGAGTCCAATGAGACCG 58 67092991 67093011 CTCTAAATCTCCAGAGGTGTG 58 NA Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000075971,ENSRNOT00000035976,ENSRNOT00000036233,ENSRNOT00000073253 1 4 5 80 5 101801092 101855462 GGGAAGCTGTTAAGAGTCTC 58 101855504 101855523 GATGTCTATTGAGCTGACGT 58 NA Rattus norvegicus 81 Pou4f3 ENSRNOG00000018842 ENSRNOT00000025465 2 1 1 89 18 36713914 36713933 CTGCAAGAACCCAAATTCTC 57 36713985 36714324 TATATTACCCTGCAGCTGC 57 NA Rattus norvegicus 81 Bles03 ENSRNOG00000020551 ENSRNOT00000027869 2 1 1 126 1 220806793 220807469 GGATGGAACCAAATGAAGAGC 60 220807557 220807575 GCATCAAATACCAGCCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Fam131c ENSRNOG00000023008 ENSRNOT00000037202 3 1 1 115 5 159929697 159929715 CTGAGCAGTTTGCCATCAC 60 159929792 159930313 GATACTCTCGAGGTCTTGGAG 59 NA Rattus norvegicus 81 AABR07066648.1 ENSRNOG00000047075 ENSRNOT00000073673 3 1 1 82 9 12115065 12115085 AGAAGTGTGACTTTGAGAGGG 60 12115129 12115864 GACATCCAGCCTGTAGTCC 60 NA Rattus norvegicus 81 Tle1 ENSRNOG00000005882 ENSRNOT00000089560,ENSRNOT00000058906 1 2 2 80 5 88573199 88573217 AAACGCAGAAATGGTCCAG 59 88569932 88573158 CCCATCACTGTCATAGTTATCC 58 NA Rattus norvegicus 81 Ehd3 ENSRNOG00000007744 ENSRNOT00000084773,ENSRNOT00000010419 2 2 2 81 6 25099678 25100257 GAAGAGGATGCAGGATCAG 57 25100302 25100320 ATCAACCACTTCTAGCAGC 58 NA Rattus norvegicus 81 Gper1 ENSRNOG00000001287 ENSRNOT00000001732 3 1 1 60 12 17310856 17310876 CTACACCATCTTCCTCTTCCC 60 17310816 17310835 GTTCACCACCAAGATGAGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam220a ENSRNOG00000024605 ENSRNOT00000029692 3 1 1 145 12 13044629 13066938 GCCTGCAGGTTCATATTGAG 59 13044503 13044521 CCTTGTGACTGCTTCACAC 59 NA InUTR Rattus norvegicus 81 Rn60_X_0614.1 ENSRNOG00000029559 ENSRNOT00000049652 2 1 1 60 X 60761762 60761783 CAAGGGAAGGTAATCATTTGGT 59 60761804 60761822 CCTGGAAATGTATTGCCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp6v0d1 ENSRNOG00000017235 ENSRNOT00000023606 1 1 1 80 19 37482592 37482706 TTACTACCCGGAATACAAACTG 58 37482533 37482551 TCAAAGAATCGGTCCTCCA 58 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000083301,ENSRNOT00000081269,ENSRNOT00000066419 2 3 8 80 13 68709932 68710069 TACACTGCTCAGTTGAAAGC 59 68710112 68710130 TACTCGGTCCATCTTCAGC 59 NA Rattus norvegicus 81 Uckl1 ENSRNOG00000050277 ENSRNOT00000020695 3 1 1 80 3 177066391 177066410 CGTGTGAGAATCATCACCAC 59 177066253 177066348 ACCAAAGTTCCCAATGCCT 60 NA Rattus norvegicus 81 Uaca ENSRNOG00000012868 ENSRNOT00000017233,ENSRNOT00000089126 1 2 2 80 8 65754099 65755965 CACAGCTTTCAGGATCTAGAG 58 65756005 65756025 GAGTATTCTTTGCTCTTGCTG 57 NA Rattus norvegicus 81 Uaca ENSRNOG00000012868 ENSRNOT00000017233,ENSRNOT00000089126 2 2 2 80 8 65745245 65745362 GTGAATGCCAAAGATATAGACG 57 65745402 65745421 CAGCAACTGACAAATTGTCG 58 NA Rattus norvegicus 81 Doxl2 ENSRNOG00000032432 ENSRNOT00000043790 2 1 1 91 4 78621893 78621912 ATCTACAACCAGAATCACCC 57 78621966 78622234 GCTACCAAATCCTGATCGT 57 NA Rattus norvegicus 81 Gprasp1 ENSRNOG00000049985 ENSRNOT00000073661 3 1 1 80 X 106307714 106307732 ACAGGTCTGCTTTAAGGCT 59 106307775 106308483 ACCAACCTCCAAGATCTGAG 59 NA InUTR Rattus norvegicus 81 Ccdc85a ENSRNOG00000003374 ENSRNOT00000056813,ENSRNOT00000081981 1 2 2 80 14 112940143 112945954 GAGGGCTTAAGGATATTAACCAG 59 112940085 112940104 GATCATCGTCCAGGAAACAG 59 NA Rattus norvegicus 81 Scgb1d2 ENSRNOG00000020294 ENSRNOT00000027492 3 1 1 89 1 225593149 225594888 GCTATGAAGCTAATGCTAGCC 59 225593080 225593100 CCTTCTTCAGTTCTTCCTCAC 58 NA Rattus norvegicus 81 Lrrc29 ENSRNOG00000025231 ENSRNOT00000059663 1 1 1 80 19 37268377 37269525 GCTCTTCACTGAAGGATGC 59 37268315 37268333 AGGAGGACAAGTCTAGCAC 58 NA Rattus norvegicus 81 Adamdec1 ENSRNOG00000030724 ENSRNOT00000028974 2 1 1 80 15 49495995 49496014 ACAGTGAGAAGCAAATTGGC 60 49495739 49495955 GAAGTGAGTTTACATTTGGGCT 59 NA Rattus norvegicus 81 Mxra7 ENSRNOG00000042915 ENSRNOT00000074286,ENSRNOT00000066137 1 2 2 86 10 105757218 105771725 GGAGGCAGGATGAAGACTC 60 105752623 105752642 ACTTAAAGGAGAAGGCTGCT 59 NA Rattus norvegicus 81 Prelp ENSRNOG00000003120 ENSRNOT00000076610,ENSRNOT00000004241,ENSRNOT00000079116 2 3 3 84 13 50754129 50754148 AACAAGATCAGCAATGTGCC 60 50752006 50754085 TCCCATTGATCTTCTCTATGCT 59 NA Rattus norvegicus 81 Fam174a ENSRNOG00000019087 ENSRNOT00000050494,ENSRNOT00000080129 1 2 2 110 9 102863285 102863303 GAGTCCCAATCCTAGCGAC 60 102863377 102873766 CTTCTCATCCTGACGGTCC 60 NA Rattus norvegicus 81 Ccdc115 ENSRNOG00000013234 ENSRNOT00000082531 3 1 1 68 9 37775591 37775609 GTATGGAGCCTCAGGTCTG 59 37775771 37775790 TGATCACTCTGAAGGTCTGG 59 NA DesignNoJunction Rattus norvegicus 81 Dyrk3 ENSRNOG00000004870 ENSRNOT00000006502,ENSRNOT00000087793 1 2 2 80 13 47908017 47914850 GGCTAAATATTACCACTGAGCC 59 47907958 47907976 GTTGCTCCACCTTCATCAC 59 NA Rattus norvegicus 81 Dyrk3 ENSRNOG00000004870 ENSRNOT00000006502,ENSRNOT00000087793 3 2 2 83 13 47908018 47914853 GAAGGCTAAATATTACCACTGAGC 60 47907958 47907976 GTTGCTCCACCTTCATCAC 59 NA Rattus norvegicus 81 Ell ENSRNOG00000019824 ENSRNOT00000026846 1 1 1 80 16 20606888 20613369 GAAGCCAAGGACACATCTC 58 20606826 20606848 CAATATTGGAGAGGTAGAAGGAG 58 NA Rattus norvegicus 81 LOC298139 ENSRNOG00000045733 ENSRNOT00000077864 1 1 2 82 5 90349007 90349025 TCTAGGTTCCTTGTGGTGG 59 90349071 90351999 GAGACTGGAACTGACTCCA 58 NA Rattus norvegicus 81 Rasl12 ENSRNOG00000032339 ENSRNOT00000046914 3 1 1 99 8 70926288 70928272 CAGTACAGGCAAGTCACCA 60 70928335 70928353 GCACATGCTCAAAGTCCAG 60 NA Rattus norvegicus 81 Zfp113 ENSRNOG00000001341 ENSRNOT00000001815 3 1 1 80 12 19292376 19292394 TTTCCTGACAAGGACAGTC 57 19291848 19292332 AAATGTCACCAACTCCTGG 58 NA Rattus norvegicus 81 Pla2g4e ENSRNOG00000024904 ENSRNOT00000030502 2 1 1 80 3 111974666 111974685 CCTCTATGACCTCTCCAAGC 59 111973782 111974623 AGTTCTTCCATGCCCTCTG 59 NA Rattus norvegicus 81 Sectm1a ENSRNOG00000036672 ENSRNOT00000054931 1 1 1 80 10 110266583 110266603 ACAGAGGGATATACTTGTGGC 59 110265603 110266544 TTGAAGGCTCTGAAACATTCAG 59 NA Rattus norvegicus 81 Bicc1 ENSRNOG00000000614 ENSRNOT00000000754,ENSRNOT00000080846 2 2 2 80 20 18921690 18921710 GAAACCATCAAGGAACTGAGG 59 18921751 18927695 CAATGAGGAGCCCTCATAGG 60 NA Rattus norvegicus 81 RGD1564129 ENSRNOG00000042120 ENSRNOT00000058966 1 1 1 84 17 56935948 56935966 CTGGATCTGCTGTTGAAGC 59 56936569 56937039 GGAAAGAACAGAGAACGCTC 59 NA Rattus norvegicus 81 Ccdc137 ENSRNOG00000048712 ENSRNOT00000072099 1 1 1 80 10 109632130 109633598 AAGAAAGCGTTCCAGAAGC 59 109633642 109633660 CTCTTGCTCCAATCTGTCC 58 NA Rattus norvegicus 81 Alkbh6 ENSRNOG00000025216 ENSRNOT00000051259 1 1 1 93 1 88770223 88770241 AAAGTGTCTGACCTCAGCC 60 88770298 88770530 CTTCATGAGGCATGATGCC 59 NA Rattus norvegicus 81 Adgb ENSRNOG00000042741 ENSRNOT00000082415 2 1 2 89 1 4535425 4535492 GGGACATCATTGGAAGAGGA 59 4529638 4529657 TCTGTTCCTTCAGGTTCTGG 59 NA Rattus norvegicus 81 Zdhhc15 ENSRNOG00000002751 ENSRNOT00000003714 2 1 1 80 X 75477248 75477996 ATTGCCCATGGGTTAATAACTG 59 75477189 75477208 AGTAGAGAACGGAATACGCT 58 NA Rattus norvegicus 81 Sgce ENSRNOG00000046905 ENSRNOT00000074177 1 1 1 80 4 29742326 29742347 TACTCGCTTATATCATGTGCTG 58 29740630 29741350 GATGGACAAGTTGGATATCTGG 59 NA Rattus norvegicus 81 AABR07054897.2 ENSRNOG00000048755 ENSRNOT00000072350 2 1 1 60 3 173265126 173265144 GAAGAGTGGGCATTGTTGG 59 173265084 173265103 TCTCCAGCATCACATCTTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr210 ENSRNOG00000029365 ENSRNOT00000042820 1 1 1 60 1 170796295 170796315 GGAAGTGGATTCATCTTGGAG 59 170796336 170796355 CACAGAGCAATTCAGGAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Raet1c ENSRNOG00000040300 ENSRNOT00000062027 3 1 1 80 1 1103543 1103561 CAGATATCACCCAGCCTCC 59 1103480 1103501 AGATGATGGATGATGAGTCCA 59 NA Rattus norvegicus 81 RGD1559622 ENSRNOG00000025219 ENSRNOT00000035057 1 1 1 81 2 149720666 149722360 GGAATAGAATACAGACTTGCTCC 59 149720607 149720626 GGAGAAAGAACTTGGTTGCA 59 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000079448 1 1 11 80 6 99062155 99062174 GAACTGCAAGCTTACACCAC 60 99062214 99063803 TTCTGTCATACTTCCCTGTGTC 60 NA Rattus norvegicus 81 LOC685406 ENSRNOG00000033407 ENSRNOT00000048225 2 1 1 107 4 82639922 82643833 CTTCAGAGACAGTGTACTCTG 58 82643902 82643920 ACTGTATGAAATGGTCCGC 58 NA Rattus norvegicus 81 Olr406 ENSRNOG00000046849 ENSRNOT00000072630 2 1 1 60 3 16183727 16183748 ATGAATGAGAACCTCTGTTTCC 59 16183766 16183787 AATTCGCAGTAGATAAGACCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klf12 ENSRNOG00000009145 ENSRNOT00000012424,ENSRNOT00000090009 1 2 2 80 15 84446916 84446937 CAAATGTGACCTTAGATAGCGT 59 84396792 84446877 ATGGATGGACCTCTTGTACTG 59 NA Rattus norvegicus 81 Ado ENSRNOG00000000639 ENSRNOT00000000791 1 1 1 80 20 22448227 22448247 AAGACCTTAACATCGCACC 58 22448290 22448309 AGATGTGCATGTAAGTGACC 58 NA Rattus norvegicus 81 Taf9 ENSRNOG00000051258 ENSRNOT00000076372 2 1 5 122 2 30665212 30666572 GATGTCAGGTACACCAGGG 60 30667388 30667408 TCCATGATATCCGGTGATCAG 59 NA InUTR Rattus norvegicus 81 AC107531.3 ENSRNOG00000059786 ENSRNOT00000015108 3 1 1 80 1 168715712 168716026 CTGGCTCTTTAAGGGAGGG 60 168716070 168716088 TCCGGTCTGTTTCCTTCAG 59 NA Rattus norvegicus 81 Adamtsl1 ENSRNOG00000006956 ENSRNOT00000081078 2 1 4 118 5 104581552 104594255 GTCATGTGGAGGAGGTGTC 60 104594337 104594355 AGGATTTCAGGAGCTGTGG 59 NA Rattus norvegicus 81 Adamtsl1 ENSRNOG00000006956 ENSRNOT00000081078 3 1 4 121 5 104581552 104594255 GTCATGTGGAGGAGGTGTC 60 104594338 104594358 TACAGGATTTCAGGAGCTGTG 60 NA Rattus norvegicus 81 Tas2r145 ENSRNOG00000037036 ENSRNOT00000055734 3 1 1 60 4 167017878 167017899 ACTGGTAAACTACTCTGACTGG 59 167017918 167017938 CAGGATGAAGTTGATGAAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pamr1 ENSRNOG00000005348 ENSRNOT00000064282 1 1 1 80 3 92443889 92450300 TAATTCACCCAGGTTGTACCA 59 92450342 92450360 AGAAGTCGTCCAGAGTTCC 59 NA Rattus norvegicus 81 Olr1425 ENSRNOG00000052623 ENSRNOT00000047242 1 1 1 60 10 44156678 44156697 GTCATTTCAGGCTCCTACTC 58 44156637 44156655 CCTCTGGTGAGTTCATCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Unc13a ENSRNOG00000018452 ENSRNOT00000025162 1 1 1 80 16 20079135 20079309 TGGTACAATCTGGACAAGAG 57 20079074 20079092 CCCTTTGATCTCCACACTG 58 NA Rattus norvegicus 81 Luc7l2 ENSRNOG00000006001 ENSRNOT00000008557 2 1 1 80 4 66308953 66308976 CAGTGATGATAGAGTATGCAAGAG 59 66309012 66322929 CCAAGATCCATTCTTGTTCCAG 59 NA Rattus norvegicus 81 Rn60_5_0814.17 ENSRNOG00000051345 ENSRNOT00000076612 2 1 1 60 5 77794969 77794989 AAATCTAGATGTGCTGCTGTG 59 77794929 77794949 TTCTCCTGTCTCAACTTTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem176b ENSRNOG00000008465 ENSRNOT00000078473,ENSRNOT00000011327 1 2 2 80 4 78451463 78451482 AAGATTGTTGTGTCTGTGGC 59 78451046 78451422 TTCATCATTCAAGACCTGGGA 59 NA Rattus norvegicus 81 Ccdc183 ENSRNOG00000017044 ENSRNOT00000061874 2 1 1 80 3 2833049 2833654 GGACATGATAGAAACCTTCCA 58 2832989 2833008 TGGCCCTGTTTCTTTATCTC 58 NA Rattus norvegicus 81 Dip2c ENSRNOG00000015288 ENSRNOT00000020634 3 1 1 80 17 63746429 63746448 CAATGCAGATGACATTGTGG 58 63746490 63748708 GAGAACACAGCTATCCTTCC 58 NA Rattus norvegicus 81 LOC500035 ENSRNOG00000031207 ENSRNOT00000050722 3 1 1 84 4 40161344 40161363 TATCACTGCTGATGTTGGCT 60 40161409 40165800 TGTATTGGCATGAGTACCCA 59 NA Rattus norvegicus 81 Atp6v1b1 ENSRNOG00000013573 ENSRNOT00000018303 2 1 1 80 4 115432988 115433160 CACTATGCCTAATGACGATATTACC 59 115433196 115433216 CTGTCCACATAAATCTGTCCC 59 NA Rattus norvegicus 81 Timd2 ENSRNOG00000021345 ENSRNOT00000059468 3 1 1 80 10 31764991 31765014 GCCACTACATATTATCCAGATCAG 59 31762349 31764956 AGTGTTATTCCAGTCTGTAGGAG 59 NA Rattus norvegicus 81 RGD1304567 ENSRNOG00000025034 ENSRNOT00000032859 1 1 1 82 5 171245232 171245250 TGCTCTTCTACCAGCTTGG 59 171245296 171245945 TGTGATGAGGAAGCCAGAC 59 NA Rattus norvegicus 81 Lrrc8e ENSRNOG00000028460 ENSRNOT00000035142 1 1 1 105 12 2563474 2563492 TTCAAGGTGCTCAAACCCT 60 2560046 2563405 TCTTGTCCTGTGTCACCTG 59 NA Rattus norvegicus 81 AABR07012277.1 ENSRNOG00000037341 ENSRNOT00000056498 1 1 1 175 2 192148061 192148079 AAGTGTCCTGAGCCTTGTC 60 192148218 192148236 CAAGGTGGAGTTTGCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tm7sf3 ENSRNOG00000001817 ENSRNOT00000002486 1 1 1 80 4 180933353 180933372 GGTACTTGGAGACAGAAGAC 57 180931796 180933312 CAGGAATGGGATCTCTTTCTG 58 NA Rattus norvegicus 81 AABR07016950.1 ENSRNOG00000049843 ENSRNOT00000040447 2 1 1 81 15 5486391 5486574 GGAACAGACTTCTGTTTAGAAAGG 60 5486333 5486353 TTCTCCAAACGCTTCATTCTC 59 NA Rattus norvegicus 81 Ifi47 ENSRNOG00000002470 ENSRNOT00000055872 1 1 2 86 10 34284414 34284433 TCAGTGTCAATGATGCTCTC 58 34284479 34284505 ATATAAGTCCCACTTTGGTCCT 59 NA InUTR Rattus norvegicus 81 Rn60_X_0648.1 ENSRNOG00000055020 ENSRNOT00000092230 1 1 1 60 X 64721434 64721454 GATCCAAAGGAACTAGAGCAG 58 64721474 64721494 TTGTTTCAAAGCTCAGACCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plekha4 ENSRNOG00000020942 ENSRNOT00000028423 3 1 1 80 1 101522454 101522473 GACACATTGGAAGACCTGAG 58 101522516 101525515 CGGTAGTCCACAATCTTCC 58 NA Rattus norvegicus 81 Lmo2 ENSRNOG00000009401 ENSRNOT00000090365,ENSRNOT00000083527,ENSRNOT00000012625 1 3 3 77 3 93926472 93930914 CAGGCGAGACTATCTCAGG 59 93930955 93930973 ATCTCATAGGCACGGATCC 59 NA DesignNoJunction Rattus norvegicus 81 Alad ENSRNOG00000015206 ENSRNOT00000076837 1 1 4 128 5 78373879 78378415 TAGCAGTCTGCGGAAAGAG 60 78373769 78373787 GAAAGTAGCCACTGTGCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fabp6 ENSRNOG00000003902 ENSRNOT00000005205,ENSRNOT00000083910 3 2 2 137 10 29192697 29193601 AGAAGTTCAAGGCAACCGT 60 29191703 29191721 TTACACGCTCGTAGGTCAC 60 NA Rattus norvegicus 81 Fam221a ENSRNOG00000009447 ENSRNOT00000012677,ENSRNOT00000067125 1 2 2 80 4 79035879 79035898 TTTCAGTCATGGACCATCCA 59 79035941 79037283 TTGGACCTACTGCTAGTGG 58 NA Rattus norvegicus 81 Ptgis ENSRNOG00000008245 ENSRNOT00000010891,ENSRNOT00000082474 2 2 2 84 3 163954227 163954247 AGAATTACAACATGCCTTGGG 59 163951019 163954182 ACCACAAACTGTTTGATGCT 59 NA Rattus norvegicus 81 Vasn ENSRNOG00000004141 ENSRNOT00000005490 2 1 1 60 10 11123351 11123370 ACAGAACCAGATCACTAGCC 59 11123310 11123330 GTTACTGAGGTTCACAAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ar ENSRNOG00000005639 ENSRNOT00000009129 2 1 1 80 X 67822857 67826577 TTCAATGAGTATCGCATGCAC 60 67826616 67826637 CCATCCAAACTCTTGAGAAAGG 59 NA Rattus norvegicus 81 Tph1 ENSRNOG00000011672 ENSRNOT00000056109 1 1 1 80 1 102692716 102692736 GATTTCTGACCTGGACTTCTG 59 102689498 102692674 TCTTTGAAGCCAGGATGGT 59 NA Rattus norvegicus 81 Slc26a11 ENSRNOG00000030537 ENSRNOT00000054987 2 1 1 80 10 108494964 108495045 GGATATCTCTTTGTTCCTCTTAGC 59 108495660 108495681 AATGCGGTAATTATTCTGGGAG 59 NA Rattus norvegicus 81 Rims3 ENSRNOG00000011171 ENSRNOT00000081333,ENSRNOT00000015033 2 2 2 81 5 139816784 139816803 CAAGAAGACTTGTGATCCCT 57 139816847 139818614 GACGATCACCTGTAGAACC 57 NA Rattus norvegicus 81 Mrpl55 ENSRNOG00000002943 ENSRNOT00000003931 3 1 1 162 10 45552943 45554174 CATGATAAGGGCCTACATCAG 58 45554582 45554600 AGCTCTCCAAGGAGATGTG 59 NA InUTR Rattus norvegicus 81 mrpl24 ENSRNOG00000022234 ENSRNOT00000035271 2 1 1 80 2 187293096 187293373 GTGGACAGGAAACCTACTG 58 187293415 187293435 TCTCCCAGATCTTGTAGAGAC 58 NA Rattus norvegicus 81 Krt7 ENSRNOG00000008057 ENSRNOT00000010660,ENSRNOT00000087481 3 2 3 83 7 143068230 143068984 CAGACCAAGTTCGAGACAC 58 143069030 143069049 CATCTCCGCAATCTCATTCC 59 NA Rattus norvegicus 81 Ntf4 ENSRNOG00000020783 ENSRNOT00000028194 1 1 1 89 1 101406344 101406364 CTACCTGTATCCTACACAGGG 59 101406415 101407022 TTTGCACACCTGTCAACAG 59 NA InUTR Rattus norvegicus 81 AABR07061078.1 ENSRNOG00000047920 ENSRNOT00000047620 1 1 1 60 4 103646665 103646688 GACAGATTTCACACTCAAGATCAG 60 103646628 103646651 GCAGTAATAAACTCCCAAATCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddx42 ENSRNOG00000009474 ENSRNOT00000013046 3 1 1 80 10 94426174 94427423 GCTTTGTCAACAGATCCACG 60 94427465 94427484 CCTCCTCCATATACTGCCAC 60 NA Rattus norvegicus 81 Olr29 ENSRNOG00000056144 ENSRNOT00000081156 2 1 1 60 1 150209825 150209845 TGCTCTAACTCACTTGTAGTC 57 150209785 150209804 ACATACCCAGACAGAAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B3gnt6 ENSRNOG00000014471 ENSRNOT00000046850 3 1 1 62 1 163148917 163148935 TCTCCTCTCGCAAAGACAC 60 163145435 163145453 GTCTTGGGAGTCTTGGACC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Snn ENSRNOG00000058739 ENSRNOT00000088279 3 1 1 60 10 4638450 4638468 GGAGCCCTTTCTACTGGTG 60 4638408 4638427 TTTGGCCTTTCTTTCCACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gal3st4 ENSRNOG00000001375 ENSRNOT00000001855 3 1 1 80 12 19590124 19590143 ATCCTCAGAGTTCGGATACC 58 19584478 19590083 CCTGAAGTACCTCTTTGAGGT 59 NA Rattus norvegicus 81 Lcn6 ENSRNOG00000028095 ENSRNOT00000029655 2 1 1 80 3 2892837 2892857 GAAGCTGTTCACCAAATGGAG 60 2892898 2893152 GCACAAGTGAAGTCCTTCTG 59 NA Rattus norvegicus 81 Vom1r74 ENSRNOG00000054932 ENSRNOT00000086592 3 1 1 60 4 87815423 87815441 AGTCTATCTTGGTGCTGGT 58 87815464 87815483 GAGATGATGAAGTCCACCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ube2e2 ENSRNOG00000032690 ENSRNOT00000046879 1 1 1 87 15 7871557 7871577 GGATCTGTCTATGAAGGAGGG 59 7871626 7905720 TTCGGAAGGTGACCTTAGG 59 NA Rattus norvegicus 81 Vom1r77 ENSRNOG00000032672 ENSRNOT00000044351 3 1 1 60 4 87872958 87872979 CTATCTGTACTATCTGCCTCCT 58 87872919 87872939 GACGTACTGGGACTGATAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Anp32e ENSRNOG00000021168 ENSRNOT00000028744 1 1 1 80 2 198048155 198048174 CTCAGAAGTAGGAGAGGGAG 58 198048216 198053998 TCATCGTCTTCTTCATCCTG 57 NA Rattus norvegicus 81 Gja4 ENSRNOG00000014357 ENSRNOT00000019246 3 1 1 60 5 145376030 145376051 TGATTTCGAATGTAACACAGCC 60 145375991 145376009 GAAAGCCTGGTCATAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc122 ENSRNOG00000042404 ENSRNOT00000030097 3 1 1 81 15 59234091 59234109 GCAAAGCAACAGCTATCAC 58 59234152 59249784 GATCATGAAGTTCCATCTGCA 59 NA Rattus norvegicus 81 Dedd ENSRNOG00000003779 ENSRNOT00000005147 3 1 1 80 13 89720460 89720962 AAGCAGACATGTGACATCAG 58 89721005 89721023 AGAGAAGACATTGCCTTGC 58 NA Rattus norvegicus 81 RGD1306441 ENSRNOG00000031449 ENSRNOT00000043065 2 1 1 114 15 80040891 80041271 TAAGTAAATGCTCGGGCCT 59 80041347 80041367 CGGTGCACTACTGATAATCTC 58 NA InUTR Rattus norvegicus 81 Plin5 ENSRNOG00000047860 ENSRNOT00000073930 2 1 1 96 9 10959507 10959526 GCCTATCAACACTCTTTGGG 59 10959585 10960445 TATGCTGGATCAGCTCCAG 59 NA Rattus norvegicus 81 LOC100912293 ENSRNOG00000046855 ENSRNOT00000073828 3 1 1 81 7 186299 186319 GAAGTGTAAATTCGAGAGGCA 59 184870 186257 AACATCCAGACTGTAGTCCC 59 NA Rattus norvegicus 81 Acer1 ENSRNOG00000047368 ENSRNOT00000075180 3 1 1 80 9 10087493 10087598 ATGGTCATAGGTCTGTTCTCC 59 10087638 10087658 CAGGATGGAGATCTCATCCAG 60 NA Rattus norvegicus 81 Smurf1 ENSRNOG00000000999 ENSRNOT00000084577,ENSRNOT00000082989 3 2 2 80 12 11519367 11519387 CTTCAGCATGAACTGAAACCC 60 11519427 11520419 CACATACAACCGCACATACTC 60 NA Rattus norvegicus 81 Mir3566 ENSRNOG00000046071 ENSRNOT00000071480 2 1 1 60 17 21353626 21353647 GGAAATGTAGTTCAAAGTTCGG 58 21353666 21353686 AGTGGTAGTTCATTGTTAGGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gabarapl2 ENSRNOG00000019425 ENSRNOT00000048998 2 1 1 81 19 44166781 44166800 AAGGATCCAGCTTCCTTCTG 60 44166843 44174525 CTGTCCCATAGTTAGGCTGG 60 NA Rattus norvegicus 81 Galnt10 ENSRNOG00000002488 ENSRNOT00000003447 3 1 1 80 10 43146922 43146943 ACGGATTTAACATCTACGTCAG 58 43146984 43158359 TACTGTTGCAGTTTGGGTG 58 NA Rattus norvegicus 81 Slc9b1 ENSRNOG00000042985 ENSRNOT00000031348 3 1 1 80 2 240550541 240550561 TCAGCTTTAAGAAACACTGCC 59 240550602 240551559 CAGATGCTTCAAAGCCTGTG 60 NA Rattus norvegicus 81 Zwint ENSRNOG00000048682 ENSRNOT00000074404 3 1 1 82 20 17090532 17090550 CTGGAACCTGTAGGATTGC 58 17090328 17090487 TCTTTCTTCCGAGAGTTCCT 58 NA Rattus norvegicus 81 Ppp2r4 ENSRNOG00000018457 ENSRNOT00000024914 1 1 1 80 3 8993006 8993025 TCGGCTTTATCCTAACCCTG 59 8993068 8997657 TCTCAATGGCCTCAGAGAC 59 NA Rattus norvegicus 81 Adamts7 ENSRNOG00000028036 ENSRNOT00000068394,ENSRNOT00000037276 2 2 2 80 8 97561280 97561298 GTCCTGTACGATGTGAACC 58 97561342 97561916 GCAGACATTATCCACGTCC 58 NA Rattus norvegicus 81 Nudt7 ENSRNOG00000011976 ENSRNOT00000034012 1 1 1 80 19 46455888 46458655 GGAGTCTGTCAGAAACAATCTG 59 46458695 46458714 AAGTGGGAATATCTGGTCCC 59 NA Rattus norvegicus 81 Bambi ENSRNOG00000016066 ENSRNOT00000021801 1 1 1 80 17 56906361 56906381 GAAGACATGTGCAATTACCGA 59 56905869 56906322 GTATCTGTTTCCTTGTCCTGAG 59 NA Rattus norvegicus 81 Zdhhc16 ENSRNOG00000046530 ENSRNOT00000072181 1 1 1 80 1 261185494 261185514 ATCTGATCCTCATCGTCTTCC 59 261185556 261185720 CAATGTCATTCCTGCCCTG 59 NA Rattus norvegicus 81 AABR07016992.1 ENSRNOG00000047272 ENSRNOT00000043553 1 1 1 87 15 5774225 5774700 AAATGACTGGTACTGCCAC 58 5774751 5774769 GTTCTCATTCCGTGCTCTC 58 NA Rattus norvegicus 81 Olr402 ENSRNOG00000046228 ENSRNOT00000041987 2 1 1 60 3 16001813 16001834 GGTACTATGGTCACTATCCCAC 60 16001854 16001873 TGCCTATGCGGACATAAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krt2 ENSRNOG00000009563 ENSRNOT00000082863,ENSRNOT00000042180 3 2 2 82 7 143415835 143415853 TCAAGATGGAGATCAGCGA 58 143415133 143415791 ACCTTTACACTGCTTCTTCAC 59 NA Rattus norvegicus 81 Samsn1 ENSRNOG00000030930 ENSRNOT00000082143,ENSRNOT00000040202 2 2 2 80 11 14254243 14265433 CTCCTGGATGAAGAAACTGC 59 14254182 14254202 TGATTCACTCAAGATGTCTGG 58 NA Rattus norvegicus 81 Als2cr12 ENSRNOG00000024917 ENSRNOT00000038431 2 1 1 80 9 65678766 65680470 TGTACCAGGATAGCATTTACG 58 65678706 65678725 CCATCTTCTCATCCTTCTCC 57 NA Rattus norvegicus 81 Fam207a ENSRNOG00000001225 ENSRNOT00000001640 3 1 1 205 20 11887997 11888015 ATCAGAAGCTCAGGGAGGA 60 11893993 11895679 CTCTTCCTCAAGAAGCTGC 58 NA DesignRelaxed Rattus norvegicus 81 Pla2g4cl1 ENSRNOG00000026764 ENSRNOT00000058334,ENSRNOT00000033633 3 2 2 81 1 75466315 75466333 AGATCAGGATGACCCTAGC 58 75466378 75466771 TTTGCCAAACTCACCTGTC 59 NA Rattus norvegicus 81 AABR07020860.1 ENSRNOG00000048922 ENSRNOT00000005532 1 1 1 80 13 43825356 43825374 GTGGGAAAGAGCAGAAGAG 58 43825417 43830082 TGTTTGTTTCCTTTCAGCCT 58 NA Rattus norvegicus 81 Egr2 ENSRNOG00000000640 ENSRNOT00000000792 1 1 1 153 20 22458364 22458382 CCCAGTAACTCTCAGTGGT 58 22456899 22458247 GTTGATCATGCCATCTCCA 58 NA Rattus norvegicus 81 Rnf139 ENSRNOG00000008987 ENSRNOT00000011891 3 1 1 80 7 98770943 98770962 CTCCTACTACGATTCCAGCC 60 98771002 98779486 CTGGATACAACTATACCGAGGA 59 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000077040,ENSRNOT00000067610 2 2 6 81 5 48012402 48013302 CCAAGCACAAGGTCTTCAG 59 48013346 48013365 AGGATAAGGTCTGAGAAGCC 59 NA Rattus norvegicus 81 Dnah5 ENSRNOG00000048363 ENSRNOT00000074689 1 1 1 80 2 81137601 81141737 TCCAGAATCTACAGCAGTTCC 60 81141775 81141797 CGGACATTTCAAAGTAAGGACTC 60 NA Rattus norvegicus 81 Dnah5 ENSRNOG00000048363 ENSRNOT00000074689 3 1 1 80 2 81126371 81130298 GATGCTTTAGTTGCTGTGTC 58 81130339 81130359 AACCAGTTCCTTCTTGATCTC 58 NA Rattus norvegicus 81 LOC498084 ENSRNOG00000038987 ENSRNOT00000046605 1 1 1 81 11 63170203 63177106 GTTGGAAGAGGGATGAAGC 58 63177151 63177169 GTCTTGTCGAAAGCCAGAG 59 NA Rattus norvegicus 81 Scgb2a1 ENSRNOG00000023151 ENSRNOT00000031612 2 1 1 80 1 225901120 225901139 GTGAAGCAATTCAAGCAGTG 58 225901179 225901895 AAATATTGCCTCCATCATCACG 59 NA Rattus norvegicus 81 Epha10 ENSRNOG00000037340 ENSRNOT00000056496,ENSRNOT00000082120 1 2 2 96 5 142875871 142877801 CGAGGAAGTTACCCTCCTG 59 142879512 142879530 ATCCACGCCACTAATCTCC 59 NA Rattus norvegicus 81 Klf14 ENSRNOG00000027557 ENSRNOT00000048436 1 1 1 60 4 58250225 58250244 GCTTTGGCTGATTTAAGCTG 58 58250184 58250202 GAGCTTCTTCCGAGTCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp382 ENSRNOG00000020777 ENSRNOT00000087931,ENSRNOT00000028187,ENSRNOT00000080555 3 3 3 82 1 88587105 88587123 CATGATCCGCAAGTTGGAG 59 88587166 88590624 CCTCTTCATCTTCCAGATAGCT 59 NA Rattus norvegicus 81 Pgm2 ENSRNOG00000002185 ENSRNOT00000002977,ENSRNOT00000086994 3 2 2 80 14 45848168 45848188 AAATCTCTGCTGTCAGAGACC 60 45844260 45848129 TCTTACTGGTAGGAAGAACAGC 60 NA Rattus norvegicus 81 Dscaml1 ENSRNOG00000016502 ENSRNOT00000022476 2 1 1 80 8 50049538 50049557 AGAAGAGGAAGGAGAAACGG 59 50052118 50052344 TTCGGTTGTTCTTGCTTATCAG 59 NA Rattus norvegicus 81 Nupl2 ENSRNOG00000010435 ENSRNOT00000013865 2 1 1 80 4 7521000 7521021 ACATTTCACCAGAAGAGTTGAG 59 7518401 7520963 GAACAGAGTTTAGATAGCTCTGC 59 NA Rattus norvegicus 81 Tas2r123 ENSRNOG00000046088 ENSRNOT00000047402 1 1 1 60 4 167154811 167154830 TGCCCACATTTGTCTATGAG 58 167154770 167154789 CCACTACCCAGATAACACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1310712 ENSRNOG00000015560 ENSRNOT00000043788 3 1 2 80 1 163556813 163564647 CAGAGTTCCCAAGATTCCC 58 163556751 163556772 CATTGCAATCTCATGTTCTGAC 58 NA Rattus norvegicus 81 RGD1310712 ENSRNOG00000015560 ENSRNOT00000081509 2 1 2 86 1 163554750 163554771 AGAGTCAGAACTAGTTGCTGAG 60 163551365 163553881 CGATGGCTGACTAGAAGGG 60 NA Rattus norvegicus 81 Rab34 ENSRNOG00000023375 ENSRNOT00000082348,ENSRNOT00000037016 2 2 2 80 10 65451257 65451350 GGATCTGAGTACTCCTGCTC 59 65451388 65451411 CAATACTCAGCCTTAATCTCTTGG 59 NA Rattus norvegicus 81 Tfrc ENSRNOG00000001766 ENSRNOT00000002407 3 1 1 80 11 71411111 71411131 TCAGGTAGTAACATTGACCCA 59 71410093 71411073 CAGTTTACCAGTAACTTCTCCAG 59 NA Rattus norvegicus 81 RGD1311595 ENSRNOG00000026942 ENSRNOT00000039428 3 1 1 81 1 247905950 247908409 TTCAGAGAAACAGAAGCCG 58 247905887 247905907 AGTTCTCTAGTGAACTGACCA 58 NA Rattus norvegicus 81 Eif2b4 ENSRNOG00000005301 ENSRNOT00000007763 3 1 1 80 6 26549508 26549527 TCAGGATTACACAACACCTC 57 26549570 26549712 GTCAGGAAGCTGATGTAGG 57 NA Rattus norvegicus 81 Lcn9 ENSRNOG00000027821 ENSRNOT00000044284 1 1 1 80 3 3272685 3272703 GACCTGAGGCTCTTCATCC 60 3272746 3273051 TCCGTGTATCATGATGTGGA 59 NA Rattus norvegicus 81 Rn60_X_0652.2 ENSRNOG00000038169 ENSRNOT00000058100 3 1 1 60 X 64220202 64220220 CCTACGAGAAAGATCCGGT 59 64220160 64220179 TCACCATCTTTGTAGTCGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rassf2 ENSRNOG00000021261 ENSRNOT00000028883 1 1 1 81 3 124579464 124580026 GAGGTCACCTATGATGTGG 57 124579401 124579419 CTTCCTCCTGGAGTTTCTG 57 NA Rattus norvegicus 81 Olr255 ENSRNOG00000051414 ENSRNOT00000083135 2 1 1 60 1 172485467 172485485 TATGTGATGCCCAAGTCCA 59 172485425 172485444 TGTAGAACACAGAAACCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bdh2 ENSRNOG00000014490 ENSRNOT00000019507 2 1 1 80 2 240467714 240468908 ATTACCCAGGTATTCAAACTCG 58 240468948 240468967 TCTTCTCAATTTCTGAGGCG 58 NA Rattus norvegicus 81 Potea ENSRNOG00000056767 ENSRNOT00000079671 2 1 4 81 14 85872089 85872108 GAGTTCCGGATATTGGAGGA 59 85872146 85873671 TTAGTAGATTCTCTGAGACACTCTC 59 NA Rattus norvegicus 81 Atp2c1 ENSRNOG00000013305 ENSRNOT00000018175,ENSRNOT00000045087 1 2 2 80 8 113963719 113963740 CTGCAATAGAAGAGGGTAAAGG 59 113962454 113963678 ATGCTGCTATACTCGTGCT 59 NA Rattus norvegicus 81 Cmas ENSRNOG00000013816 ENSRNOT00000018734 3 1 1 80 4 177001614 177001755 TCACAATGAGGTTGACATTGTG 60 177001796 177001814 TCTGCAACTTTCTGGAGGT 59 NA Rattus norvegicus 81 Plekhg5 ENSRNOG00000022694 ENSRNOT00000064841,ENSRNOT00000084487,ENSRNOT00000082586 2 3 3 80 5 169285362 169285380 ACGAAGGTCATCAGACCAC 59 169285423 169285524 GATGAGGAGGAAGGAACCAG 60 NA Rattus norvegicus 81 Galk1 ENSRNOG00000006359 ENSRNOT00000008525 3 1 1 81 10 104561879 104562032 TACTCATTGACTGCAGGTCC 60 104561817 104561835 TTGGAGTTGGTGATGAGCA 59 NA Rattus norvegicus 81 Mt1 ENSRNOG00000038047 ENSRNOT00000057898 3 1 1 87 17 78793394 78793412 CAGATCTCGGAATGGACCC 60 78793463 78793481 CATTTGCAGTTCTTGCAGC 59 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Rraga ENSRNOG00000007051 ENSRNOT00000009225 3 1 1 60 5 104941897 104941915 TGAAGTTCTGCTGTTCGAG 58 104941939 104941957 CTCTTTGCACTGGTAGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nudt4 ENSRNOG00000009094 ENSRNOT00000012363 1 1 1 80 7 36646712 36648051 CTGGGAATATTTGAGAATCAAGACC 60 36646656 36646679 CCAGTCTTCCAATATTTCAGTGAC 60 NA Rattus norvegicus 81 RGD1561017 ENSRNOG00000038474 ENSRNOT00000058627 1 1 1 80 10 41545910 41545928 CTGATGCCTTCTCTGTCTG 58 41545070 41545868 GTATGAGTCCCTCACAAACAG 59 NA Rattus norvegicus 81 Usp44 ENSRNOG00000005637 ENSRNOT00000007465 1 1 1 80 7 34752729 34752747 CACAGAAGCCCAGAAACAG 59 34752791 34757894 CCTGACCATCTGAATCGCT 60 NA Rattus norvegicus 81 LOC100362658 ENSRNOG00000023233 ENSRNOT00000074820 3 1 1 80 1 99489236 99493851 AGTGTTGGTGTCAAGAAGTG 58 99493893 99493912 TTCTGGTTTGAAATGCTGCA 59 NA Rattus norvegicus 81 Psmd4 ENSRNOG00000021042 ENSRNOT00000028589 3 1 1 80 2 196200139 196200315 GGGAAGAGGAGGTGAACAC 60 196200077 196200097 CTAGATGTGATCCAGTTCCGT 59 NA Rattus norvegicus 81 Hnrnpab ENSRNOG00000046272 ENSRNOT00000086193,ENSRNOT00000065584 1 2 2 80 10 37052820 37052841 ACATTTAAAGAGGAAGACCCTG 58 37051186 37052781 CTTGATTTCACACTTGCTACC 58 NA Rattus norvegicus 81 Kb23 ENSRNOG00000030814 ENSRNOT00000068505,ENSRNOT00000077207 2 2 2 81 7 143137700 143137718 AGATCAAGGCTCAGTACGA 58 143137403 143137655 ATTTCCTCACACTTGGTGC 58 NA Rattus norvegicus 81 Iba57 ENSRNOG00000022725 ENSRNOT00000036940 1 1 1 86 10 45508263 45514528 GTGTATGGACTCCCAGAGTG 60 45508196 45508214 GTACTTCTGTAGGGTGCCC 60 NA Rattus norvegicus 81 AABR07061158.1 ENSRNOG00000043460 ENSRNOT00000066666 1 1 1 112 4 107443762 107443806 TTTGCCAAGAAGTGTCACG 59 107443668 107443686 CTCCTCTAACTGGGACAGG 59 NA Rattus norvegicus 81 AABR07061158.1 ENSRNOG00000043460 ENSRNOT00000066666 3 1 1 114 4 107443762 107443806 TTTGCCAAGAAGTGTCACG 59 107443666 107443685 AACTCCTCTAACTGGGACAG 59 NA Rattus norvegicus 81 Srpx2 ENSRNOG00000003715 ENSRNOT00000005020 2 1 1 80 X 104751502 104751794 ATGTGTAGACATAGATCCACCC 59 104751834 104751853 CGAGCAGTTAGTTTCTCTGG 58 NA Rattus norvegicus 81 Il3ra ENSRNOG00000001325 ENSRNOT00000001792 1 1 1 99 12 18537692 18537807 GCAGATCAACCAGAGTTCAC 59 18537526 18537544 CTTGACACGCACAGAAACC 60 NA Rattus norvegicus 81 Phb-ps1 ENSRNOG00000006625 ENSRNOT00000008661 2 1 1 60 10 68926054 68926072 GTTATCTTTGACTGCCGCT 58 68926012 68926030 AGTCTTTGCTACCAGTGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc23 ENSRNOG00000007404 ENSRNOT00000066169,ENSRNOT00000009879 2 2 2 80 5 138246253 138250949 AGAGCAGAGATCTATGCTCTC 59 138250989 138251009 CTGCATCTGCTTACAGAACTC 59 NA Rattus norvegicus 81 Dstn ENSRNOG00000005924 ENSRNOT00000007794 1 1 1 82 3 138046136 138047812 ATGTTCTTCTTGTGGGCAC 58 138047858 138047876 TTCTTCTTGATGGCGTCCT 59 NA Rattus norvegicus 81 Pitpnm3 ENSRNOG00000008323 ENSRNOT00000071764 3 1 1 80 10 58638445 58638463 ACTTCTTCCTCTTCGGCTC 59 58636865 58638403 TCTGGAAACCATCTATCCCAG 59 NA Rattus norvegicus 81 Krt76 ENSRNOG00000031785 ENSRNOT00000048613,ENSRNOT00000080260 2 2 3 88 7 143491699 143491718 CTGATGAACGTTAAGCTGGC 60 143490094 143491648 AACTCTCCAGACAACCTGC 60 NA Rattus norvegicus 81 Htr7 ENSRNOG00000018827 ENSRNOT00000025450,ENSRNOT00000078150,ENSRNOT00000025493 1 3 3 93 1 254670995 254671013 TTCTGCAACGTCTTCATCG 59 254558984 254670938 TGATCCCAAGGTACCTGTC 58 NA Rattus norvegicus 81 Pappa ENSRNOG00000033527 ENSRNOT00000040898 2 1 1 80 5 80978184 80985475 GAGCTATGCAGATGACGAC 58 80985517 80985537 TATACGAGGTCCAGGTAACAG 59 NA Rattus norvegicus 81 Lrrn3 ENSRNOG00000006368 ENSRNOT00000008655 3 1 1 81 6 61404898 61404916 TCAACCAAGGAACTGTGCA 60 61377054 61404857 CAGATAGAGGCATTATTCTTGCC 60 NA InUTR Rattus norvegicus 81 RGD1309170 ENSRNOG00000024623 ENSRNOT00000045169,ENSRNOT00000089222 3 2 2 81 2 243453784 243453804 ATGAACACCAGAATCAACAGG 59 243452655 243453745 GCTTCAACAGGATCTTTATCTCC 59 NA Rattus norvegicus 81 Sertad2 ENSRNOG00000005393 ENSRNOT00000007162 1 1 1 91 14 104821281 104821299 CGTCCTCTGTGATGTCAGG 60 104821353 104884850 ATACAGTAATGCACAGCCCA 60 NA DesignNoJunction Rattus norvegicus 81 Map1a ENSRNOG00000014230 ENSRNOT00000083005,ENSRNOT00000019320 3 2 2 80 3 113260891 113261146 AGTATCAGCTCAGAGGTTCAC 59 113261185 113261206 TTCTAAAGTTTGTCCACTCAGG 58 NA Rattus norvegicus 81 Bmp1 ENSRNOG00000010890 ENSRNOT00000046054 1 1 1 80 15 52181165 52181183 CGTGTGGAGTTCAAGTCTG 59 52177594 52181124 GGAACATTCATCCTTGTCTGAG 59 NA Rattus norvegicus 81 Fry ENSRNOG00000000894 ENSRNOT00000075920,ENSRNOT00000041365 2 2 4 80 12 5709249 5711373 CATTCCTTGGCCTTATACCC 58 5709188 5709206 AACGTGCCATCTGTTAAGG 58 NA Rattus norvegicus 81 Cep78 ENSRNOG00000014041 ENSRNOT00000018951 3 1 1 80 1 233198868 233203874 GCTACTATTCGAGTTGGTTTAGC 60 233198810 233198831 AGCATAGGAGTCTTTACTGAGC 60 NA Rattus norvegicus 81 Rpp30 ENSRNOG00000018718 ENSRNOT00000025412 1 1 1 80 1 254697270 254697289 GATTTGGATCTAAGAGCGGG 58 254697331 254698635 AACTGAGTATCCCAGGTGAG 59 NA Rattus norvegicus 81 Lancl2 ENSRNOG00000006810 ENSRNOT00000008948 3 1 1 80 4 88540303 88540323 CCTGTATGCCTTACTGTACCT 59 88539351 88540265 GCAGTGACTACCTCTTTAATAGC 59 NA Rattus norvegicus 81 LOC100912371 ENSRNOG00000049321 ENSRNOT00000071145 3 1 1 60 4 1730695 1730713 TTCTGTGACGGTAACACCA 59 1730736 1730755 AGAGCTGCAGTAAAGGTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr70 ENSRNOG00000013336 ENSRNOT00000060146 1 1 1 80 2 56996377 56996395 TCATGCACCTGGTACAGAC 59 56994347 56996335 GTATCATCACCTCCACGAGAG 60 NA Rattus norvegicus 81 Gpr179 ENSRNOG00000029245 ENSRNOT00000055427 2 1 2 80 10 85275314 85275333 CAAGTGACAGTGCATCAGAG 59 85275229 85275272 CATCAACAGAGCACTCTTGG 59 NA Rattus norvegicus 81 Asmt ENSRNOG00000001324 ENSRNOT00000001791 3 1 1 97 12 18524782 18525081 CATCTACAGGTCAGAGCCTG 60 18524704 18524722 AGAGGTCAAAGGCTGTGAG 59 NA Rattus norvegicus 81 Krt4 ENSRNOG00000032332 ENSRNOT00000082264,ENSRNOT00000012943 2 2 2 80 7 143521607 143521625 AAAGGTCGCCTACAGTCAG 59 143520633 143521567 GTTGATCTCTTCCTCATACTTGG 59 NA Rattus norvegicus 81 Snapc4 ENSRNOG00000018845 ENSRNOT00000068110,ENSRNOT00000061682 2 2 2 80 3 3820394 3820487 GAAATTCAGGACATCAACCAG 57 3820334 3820352 GGAAATCTTCTCCCAGTCG 58 NA Rattus norvegicus 81 Zfp956 ENSRNOG00000026874 ENSRNOT00000059263 3 1 1 80 4 77633950 77633968 TACCCAGTGTGACAAACGT 59 77634010 77635210 ACTACACAGAGAAACCCTGAG 59 NA Rattus norvegicus 81 Ninl ENSRNOG00000027747 ENSRNOT00000068689 2 1 1 80 3 146721532 146721551 CTCGGTTACACAATGTGGAG 59 146720081 146721495 CAGATCTGGTATTCTTCTCAAACTG 60 NA Rattus norvegicus 81 Rn60_5_1052.2 ENSRNOG00000051168 ENSRNOT00000076789 1 1 1 60 5 101120015 101120034 TGACTTGCCTTCTATCACCA 59 101119974 101119994 CCCTCCAAGTTCCTTTATGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Txndc11 ENSRNOG00000002452 ENSRNOT00000003332 3 1 1 80 10 4625435 4625457 CTCTCAATCACATCTTCATCCAG 59 4625496 4629822 TCTGAGACACATCGATCCTG 59 NA Rattus norvegicus 81 AC130035.1 ENSRNOG00000042235 ENSRNOT00000067227 1 1 1 80 5 172882785 172882804 AAAGAAGGCTGAGACCTACC 59 172882844 172883060 TTCTGAGTGCCAACTATTTCTG 59 NA Rattus norvegicus 81 Olr279 ENSRNOG00000046162 ENSRNOT00000047040 2 1 1 60 1 172942967 172942990 GAACCCTATCATTTATAGCCTCAG 59 172942930 172942950 AAACTGTCTCTTCATAGCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nova1 ENSRNOG00000031440 ENSRNOT00000083277,ENSRNOT00000050372 1 2 2 80 6 66984471 67083531 TTTATCCAGGTACTACTGAGAGG 59 66984413 66984433 CTGCAATGAATCCATGAACTG 58 NA Rattus norvegicus 81 Nudt22 ENSRNOG00000021158 ENSRNOT00000028734 3 1 1 80 1 222247955 222247978 GAATTATTATCTGAGTGGAGGACC 59 222247671 222247916 AGTCTCTGTACCCTCTGTG 58 NA Rattus norvegicus 81 Lypd1 ENSRNOG00000003453 ENSRNOT00000004741 1 1 1 60 13 42261362 42262688 GATTGTTCTGGCTTCCAGG 59 42261320 42261341 TGAAATTCTTCACACTGGTAGC 59 NA DesignNoJunction Rattus norvegicus 81 LOC500148 ENSRNOG00000038471 ENSRNOT00000009001 2 1 1 81 4 88676062 88684041 AAATGAATTTCAGGGAGGAAGC 59 88676002 88676021 TCAAGCTCATCCTGCTTCTC 60 NA InUTR Rattus norvegicus 81 Pde6a ENSRNOG00000017816 ENSRNOT00000024171 1 1 1 80 18 56590624 56592402 CAACCTCTACCAGATGAAATCAC 59 56592440 56592460 AACTCCAAATGATGCCTTTCC 59 NA Rattus norvegicus 81 Hrg ENSRNOG00000001809 ENSRNOT00000081864,ENSRNOT00000090031,ENSRNOT00000047595 1 3 3 80 11 81637025 81637664 GACATCTGAGGTTGTGATTGG 59 81636965 81636986 CCATTCACGCTAAGATCTTGAG 59 NA Rattus norvegicus 81 Necap2 ENSRNOG00000008427 ENSRNOT00000011394 3 1 1 80 5 159597316 159597336 TTTATTGGGATTGGCTTTGGG 59 159596106 159597275 CTTCACCCACTTGAAATGGT 58 NA Rattus norvegicus 81 Tekt2 ENSRNOG00000011033 ENSRNOT00000014721 3 1 1 80 5 144344508 144344608 GACCAACAACCAGACTGTG 59 144344446 144344466 TTCCATCGATTGACAGTATCG 58 NA Rattus norvegicus 81 Cd59 ENSRNOG00000042821 ENSRNOT00000067085 2 1 1 83 3 94018610 94025287 TTCCACAGGTGTTAGCCTC 59 94025334 94025352 AGGTTAGGAGAGCAAGTGC 59 NA Rattus norvegicus 81 Sptbn2 ENSRNOG00000058842 ENSRNOT00000088288 3 1 1 80 1 219998679 219999287 GAGCATGTGACTATGCTTCG 59 219999330 219999348 ACTGTCTACACGCTCTTGG 60 NA Rattus norvegicus 81 Thoc7 ENSRNOG00000007701 ENSRNOT00000083787,ENSRNOT00000010675,ENSRNOT00000079000 2 3 3 80 15 12582224 12582334 GAAAGTGTTGAAGATAAGCTGG 58 12582374 12582393 TGTCTGTTGAAGTTCATGGA 57 NA Rattus norvegicus 81 Rn60_X_0725.2 ENSRNOG00000051067 ENSRNOT00000076314 1 1 1 60 X 71648328 71648347 GAGAACTGGTTCTACACAGG 58 71648370 71648388 CACCACCATGGAGATACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Egln3 ENSRNOG00000005053 ENSRNOT00000007219 3 1 1 96 6 75055997 75056017 GGTTATGTTCGTCATGTGGAC 59 75055128 75055939 CTCCATGTAACTTGGCGTC 59 NA Rattus norvegicus 81 Snx31 ENSRNOG00000025501 ENSRNOT00000036852 3 1 1 80 7 75328478 75333671 CTTCCCTTGGAACTCTGCT 59 75328416 75328437 CACTGTACTGAAATCTCAGCTC 59 NA Rattus norvegicus 81 Fras1 ENSRNOG00000002053 ENSRNOT00000002814 1 1 1 80 14 14455782 14461483 AAGAACATCCGAACAGAATCC 59 14455722 14455741 ATGTCGGTCTGAGATTAGGG 59 NA Rattus norvegicus 81 Rn60_13_0841.2 ENSRNOG00000051185 ENSRNOT00000076486 3 1 1 84 13 79148138 79148156 CATGTGCAGAAGGCTAAGC 59 79147841 79148090 AAACATGGGCTTGATCACC 58 NA Rattus norvegicus 81 Utp11l ENSRNOG00000007174 ENSRNOT00000009882 3 1 1 95 5 142669973 142669996 TCGATAGGGTCTATAATAGACCCA 60 142667652 142669919 CTTTGGCTATCCGCTTGAG 59 NA Rattus norvegicus 81 Ganab ENSRNOG00000019724 ENSRNOT00000035650 1 1 1 80 1 225111361 225111615 TTTCACAACTATGAGGGTTCAG 58 225111655 225111674 TTCAGGACCATTGAACACAG 58 NA Rattus norvegicus 81 LOC680579 ENSRNOG00000032160 ENSRNOT00000049161 1 1 1 60 14 44225528 44225546 GCTCACTGACTTCAGACTC 58 44225486 44225506 AGCTTTCCGTACATACTTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd46 ENSRNOG00000007917 ENSRNOT00000057151 2 1 1 80 13 113802927 113802947 TACCAAGCCTCCAGTTTACAG 60 113795600 113797987 ATCCATGCATCGAATTCTTGG 59 NA Rattus norvegicus 81 RGD1564425 ENSRNOG00000038259 ENSRNOT00000058238 2 1 1 60 3 123997020 123997039 AGCAGATCAAACCTTACACC 58 123996979 123996999 AACCGTTTCTCATACAAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0836.2 ENSRNOG00000051207 ENSRNOT00000076646 2 1 1 60 13 78674281 78674300 GAAAGAGGAGAGGTACTCGG 59 78674323 78674341 GGAACGACTCCATGTTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sec23a ENSRNOG00000004657 ENSRNOT00000006369,ENSRNOT00000084611 3 2 2 80 6 80093494 80093515 CTAAAGTACCTGTTACTCAGGC 58 80092464 80093458 GTACTGGCTGTAAGAATCTATTGG 59 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000076519,ENSRNOT00000075974,ENSRNOT00000075878,ENSRNOT00000091249,ENSRNOT00000077505 1 5 9 82 4 14070573 14070594 GTGTTGAAACTTTCTGAGTCTC 58 14070635 14071125 CCTGGTTCAACTAATTCATGC 58 NA Rattus norvegicus 81 Arhgap42 ENSRNOG00000026821 ENSRNOT00000031492 1 1 1 80 8 7245730 7245750 GTACTTACGACAAAGGAAGCA 58 7243700 7245690 TAACAAGGCCATTCATCTTCC 58 NA Rattus norvegicus 81 RSA-14-44 ENSRNOG00000042954 ENSRNOT00000068400 3 1 1 60 4 96832111 96832131 GTTTCCTGATGTTTATGTGCC 58 96832152 96832171 ATCCACTTCGATATCAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif3b ENSRNOG00000001253 ENSRNOT00000060444 3 1 1 80 12 16298837 16301240 TTCTCACCTTGTGAAAGATACC 58 16298778 16298797 CCAGATAATGATGGCCTGAG 58 NA Rattus norvegicus 81 Ankrd16 ENSRNOG00000028168 ENSRNOT00000025011 1 1 1 80 17 70389293 70391136 TTTATGCAGCGAAGGAAGGA 60 70389232 70389253 GTTCATCTGTGGAGTTGATGTC 59 NA Rattus norvegicus 81 Ankrd16 ENSRNOG00000028168 ENSRNOT00000025011 2 1 1 81 17 70389294 70391137 CTTTATGCAGCGAAGGAAGG 59 70389232 70389253 GTTCATCTGTGGAGTTGATGTC 59 NA Rattus norvegicus 81 Ccbe1 ENSRNOG00000024536 ENSRNOT00000034069,ENSRNOT00000034075 2 2 2 80 18 61788776 61788794 ACGTGCTATCCAGGATACC 59 61787194 61788733 ACACTCATCGATATCCAGGC 60 NA Rattus norvegicus 81 Dcx ENSRNOG00000047712 ENSRNOT00000074322 2 1 1 80 X 115113716 115113734 CAACACCTAAGTCGAAGCA 58 115106382 115113672 GCAGGTACAAGTCCTTGTG 59 NA Rattus norvegicus 81 Tsta3 ENSRNOG00000009020 ENSRNOT00000012306,ENSRNOT00000082058 1 2 2 82 7 116959577 116959849 GTTCATCTACTCACTGGACCT 59 116959515 116959533 CTGAGAGGATGATGGGCTC 59 NA Rattus norvegicus 81 Plekhm2 ENSRNOG00000012163 ENSRNOT00000016333 2 1 1 80 5 160196544 160197031 AGTACTATGTCAGGAATGCCC 59 160196484 160196503 TAAACTCCAACCCAGACACC 60 NA Rattus norvegicus 81 AABR07002473.1 ENSRNOG00000046339 ENSRNOT00000012225 1 1 1 81 1 74775020 74777263 TCAACTGGAGAACTTCTGTC 57 74778241 74778261 GGTCCATAGGAAATCTGAAGG 58 NA Rattus norvegicus 81 Kcnk2 ENSRNOG00000002653 ENSRNOT00000003684,ENSRNOT00000077282 2 2 2 80 13 107692270 107733316 AAGACGAAGGAAGAGGTGG 59 107692208 107692226 TGTTTCCTTGAACTCGGCT 60 NA Rattus norvegicus 81 Rspo1 ENSRNOG00000009656 ENSRNOT00000012811 3 1 1 96 5 143005916 143005935 CTTGTACTTACACAAGGGCC 59 143005994 143006309 TTCACATTGTGCAGGACTG 58 NA Rattus norvegicus 81 Fbxo3 ENSRNOG00000009549 ENSRNOT00000014478 1 1 1 80 3 93993596 93993616 GTCTTTAATGTTGCCATCCCA 59 93993658 93998512 AGGACCCATTTCCAATCGG 60 NA Rattus norvegicus 81 Arhgef37 ENSRNOG00000025502 ENSRNOT00000032189,ENSRNOT00000087188 3 2 2 80 18 56840133 56840152 CTCTTTCCAAGAAGACCACC 58 56839385 56840091 ATTCCTTGTCTTCTGTCCTG 57 NA Rattus norvegicus 81 Kat6b ENSRNOG00000012850 ENSRNOT00000070893 1 1 2 80 15 2818349 2818367 GAAGAAGAGGCAGACAGAG 57 2818265 2818308 GTGGTTAAAGTTCTACAAAGGG 57 NA Rattus norvegicus 81 Fut9 ENSRNOG00000008475 ENSRNOT00000011393 2 1 1 124 5 40131988 40237348 GCTGGGATCGATTTAGAATGTG 60 40034638 40034656 TGCCTTTGGATGTTGAGGT 60 NA InUTR Rattus norvegicus 81 Herc3 ENSRNOG00000007304 ENSRNOT00000010241,ENSRNOT00000087451 2 2 2 80 4 89165557 89165577 CCACTGTGAAACTATTCTGGG 59 89165619 89167470 TGCCTGTCAGGAACAAGAG 60 NA Rattus norvegicus 81 Snx11 ENSRNOG00000008642 ENSRNOT00000011474,ENSRNOT00000081348,ENSRNOT00000089146 1 3 3 80 10 84630213 84631885 GGAGACCAACTTAACAGTTGC 60 84630153 84630173 CTTCTCTTCACTGAGAGGTGG 60 NA Rattus norvegicus 81 Fam83h ENSRNOG00000030264 ENSRNOT00000082433,ENSRNOT00000048446 2 2 2 81 7 117066628 117066646 GTCTTTCAAGGGCCATCTG 59 117066375 117066586 CCACATGAAGCTATAACTACCG 59 NA Rattus norvegicus 81 Prdx6 ENSRNOG00000002896 ENSRNOT00000034583 1 1 2 81 13 79081206 79084172 GGAGCAAGGACATCAATGC 59 79081143 79081161 TCCCTGTCCTTATCGTCGA 60 NA Rattus norvegicus 81 Camk1g ENSRNOG00000006470 ENSRNOT00000009158,ENSRNOT00000044161 1 2 2 80 13 112078081 112079566 CAGACACCCTTGGATTGAC 58 112078019 112078039 AAGTTCTTCTGAATCTGGAGG 57 NA Rattus norvegicus 81 Retn ENSRNOG00000001001 ENSRNOT00000091197 3 1 2 107 12 2201970 2202150 CTGCCACGTACTTAACAGGA 60 2202220 2202238 TCATCCATGGGACACAGTG 59 NA InUTR Rattus norvegicus 81 Me3 ENSRNOG00000017311 ENSRNOT00000023329,ENSRNOT00000087067 3 2 2 80 1 154008756 154032613 GCTGTGACAGATAAGTTCGG 59 154032656 154032674 GTTGAGTAGACGGAAGGCA 59 NA Rattus norvegicus 81 Kazn ENSRNOG00000014322 ENSRNOT00000019447 2 1 1 80 5 160675554 160677162 CCCTATTGTACAGTCACTAGAGG 60 160675496 160675514 GAGATGGAGCCAAATCCCA 60 NA Rattus norvegicus 81 Lrfn2 ENSRNOG00000011803 ENSRNOT00000015705 1 1 1 91 9 13847046 13875742 ACTGATTTACAGGATGATCCCA 59 13846976 13846994 TAGCCAGTACGCACAAGTC 60 NA Rattus norvegicus 81 Phyhd1 ENSRNOG00000016794 ENSRNOT00000022552 2 1 1 84 3 8832805 8835815 CTCAAGAAGTTCCAGGAGGA 59 8835862 8835880 CAATCCTCTGCTGCATGAC 59 NA Rattus norvegicus 81 Spink7 ENSRNOG00000032873 ENSRNOT00000040936 3 1 1 82 18 57920081 57920100 TTCACAGCAACCTGTTTGTG 60 57918245 57919170 ATGTCACAGTCCACTGTGG 60 NA Rattus norvegicus 81 LOC685221 ENSRNOG00000027305 ENSRNOT00000038594 3 1 1 62 6 108831174 108831194 GGATCAAGAATTCCCATTGTG 57 108832627 108832646 TCCTAGAAGTGTACCAACGA 58 NA DesignNoJunction Rattus norvegicus 81 Upp2 ENSRNOG00000005341 ENSRNOT00000035158 3 1 1 60 3 44832994 44833015 GAACATTGAAATGGAATCGACG 59 44833035 44845170 AGCTCTCAAGCCACATAGTC 60 NA DesignNoJunction Rattus norvegicus 81 Grin1 ENSRNOG00000011726 ENSRNOT00000037725,ENSRNOT00000049297,ENSRNOT00000044246 1 3 3 80 3 2514182 2514275 GGTCAAGAAGGAGATTCCCA 59 2514121 2514140 AGTCCTACTAGCAACCACAG 59 NA Rattus norvegicus 81 Fga ENSRNOG00000024848 ENSRNOT00000064091 3 1 1 80 2 182010311 182010329 AAAGCGCAACAGATTCAGG 59 182010373 182011034 ATCAATGTCCACCTCCAGG 59 NA Rattus norvegicus 81 LOC361914 ENSRNOG00000028985 ENSRNOT00000042494 1 1 1 80 2 88454304 88475537 CTACCAAGACCTTATAAGGTACG 58 88454246 88454264 CACTGGTGTGAGAATGAGG 58 NA Rattus norvegicus 81 Olr1637 ENSRNOG00000025640 ENSRNOT00000034647 3 1 1 60 15 27997547 27997568 GAAGATGTTGAGCAATTTCCTC 58 27997508 27997528 AGTAATACAGGCAGCAAAGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zc3h7a ENSRNOG00000002420 ENSRNOT00000003309,ENSRNOT00000084151 2 2 2 80 10 4553529 4553631 CATATGTTAGAGCTGAGCTCTC 58 4555637 4555658 TATCTTCCACAGAATGGTTCAC 58 NA Rattus norvegicus 81 Zc3h7a ENSRNOG00000002420 ENSRNOT00000003309,ENSRNOT00000084151 3 2 2 80 10 4559897 4559915 CCTCTGACTTCACCCTTGG 60 4559959 4561031 GGTGGACAGATCTCGAGTG 60 NA Rattus norvegicus 81 Car3 ENSRNOG00000010079 ENSRNOT00000014180 1 1 1 80 2 88130635 88130654 TATAACACCTTCGGAGAGGC 59 88129785 88130594 TTTCTCCCGTCCTATCTTCAG 59 NA Rattus norvegicus 81 Atp5c1 ENSRNOG00000019223 ENSRNOT00000041346,ENSRNOT00000025993,ENSRNOT00000090453 1 3 4 83 17 72241143 72247227 CTCTGAACTCTATGGCCGA 59 72247274 72247292 AGTTCGTGCAGATTAACCC 58 NA Rattus norvegicus 81 Acadl ENSRNOG00000012966 ENSRNOT00000017686 2 1 1 80 9 73849905 73849925 GTGGAGAATGGAATGAAAGGA 58 73849323 73849863 TAGTTCTGCTGTGTCCTGG 59 NA Rattus norvegicus 81 Adam7 ENSRNOG00000014054 ENSRNOT00000019209 3 1 1 80 15 49453740 49455649 TCCACAGATCTTGGATCACTG 60 49453680 49453699 TTACAAGTGCTGATGCTTGC 60 NA Rattus norvegicus 81 Eif3h ENSRNOG00000040153 ENSRNOT00000061786 2 1 1 80 6 108746048 108747550 GTCGTTCTCATTTACGATCCC 59 108747589 108747610 CATCAGTTTAGGAGTCAGTCTG 58 NA Rattus norvegicus 81 Syvn1 ENSRNOG00000020950 ENSRNOT00000028462 3 1 1 80 1 221411210 221411229 GTGGCACTCTTTACACTCCT 60 221411272 221411382 GCTGCGTTCCATAAAGTCC 59 NA Rattus norvegicus 81 Sh3pxd2a ENSRNOG00000020353 ENSRNOT00000082799,ENSRNOT00000027574 3 2 2 80 1 267058256 267058274 GAGATCGGCTTTGAGAAGG 58 267053426 267058214 GCCTAGGTATCTGATGTACCA 59 NA Rattus norvegicus 81 Malsu1 ENSRNOG00000009035 ENSRNOT00000011970 1 1 1 80 4 78736553 78736574 ACTTTGTAATTGGTAGTGGGAC 58 78736612 78742430 TCAGGTGTTTATACGTCTTCAC 58 NA Rattus norvegicus 81 Ifnb1 ENSRNOG00000006268 ENSRNOT00000008224 2 1 1 60 5 106865637 106865656 CAAAGCACTAGCATTCGGAC 60 106865596 106865614 GGTTGAGCCTTCCATTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sf3b2 ENSRNOG00000020412 ENSRNOT00000068497 2 1 1 80 1 220653105 220655678 TATCCCTGAGAGCTGTCCT 59 220653043 220653062 TAAAGTGGCTTCCCAGTCTC 60 NA Rattus norvegicus 81 Exosc4 ENSRNOG00000012348 ENSRNOT00000016464 2 1 1 89 7 117392240 117392359 GACATTTATGTGCAGGTGCT 59 117392410 117392429 TATCCCAGCATCCATCACTG 59 NA Rattus norvegicus 81 Klhl36 ENSRNOG00000016422 ENSRNOT00000022091,ENSRNOT00000081019 3 2 2 90 19 52525004 52529237 GTCTTCAAAGGTGTACCACTG 59 52529289 52529307 CACATCACAGAAGAGGCCA 60 NA Rattus norvegicus 81 Lrch2 ENSRNOG00000029582 ENSRNOT00000045463 3 1 1 80 X 118580565 118615435 ACCCAAGCAGATCTTTCCA 59 118580503 118580523 GTTTAAAGTTTCGAGTGGTGC 58 NA Rattus norvegicus 81 Mrps35 ENSRNOG00000001842 ENSRNOT00000002520 3 1 1 80 4 181452964 181454555 CAAGACAGACAGATGCCCT 59 181454596 181454617 CAAGATTCATGGTACAGGACTG 59 NA Rattus norvegicus 81 Mrpl36 ENSRNOG00000047971 ENSRNOT00000072992 2 1 1 60 1 32570372 32570390 AGAAGCGCTGTAGAGACTG 59 32570330 32570348 TTACAGAGGACAAACCAGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ikzf1 ENSRNOG00000004444 ENSRNOT00000005902,ENSRNOT00000080753 3 2 2 80 14 91855030 91855051 AGAAGAACATAAAGAGCGATGC 59 91855089 91858065 GTTTCTTCCTTAATGACTGGGT 58 NA Rattus norvegicus 81 Tas2r105 ENSRNOG00000005664 ENSRNOT00000007481 1 1 1 60 4 165828378 165828396 CATGGGCAATCTCCTTCTC 58 165828336 165828356 CCATGATTCTTTGGATTGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Maged2 ENSRNOG00000002449 ENSRNOT00000044483,ENSRNOT00000080358 3 2 2 80 5 33177436 33177454 TGAATGGAAATCGGTCCAG 58 33176954 33177298 GTGAGTGATGTATCCCAGG 57 NA Rattus norvegicus 81 LOC100909611 ENSRNOG00000032126 ENSRNOT00000044305 2 1 1 60 3 76495913 76495931 CAGTGATGGCCTATGACAG 58 76495871 76495892 ATTACAACTGTGTAGAGTAGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chmp4bl1 ENSRNOG00000034071 ENSRNOT00000052393 3 1 1 60 4 67060469 67060488 AGACTTCCACAGCTATCTCC 59 67060510 67060529 AGCTCATCCTTGTCAAACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddit4l2 ENSRNOG00000010047 ENSRNOT00000013661 3 1 1 80 2 242882846 242884544 GAGTCTGCTAAGTGATTTCGAC 59 242884583 242884603 GTTGTCTCTTCAAACACCACC 60 NA Rattus norvegicus 81 Zmynd12 ENSRNOG00000022199 ENSRNOT00000076488 3 1 2 96 5 138504297 138504840 CTTTACTTGTAGGACACGGG 58 138504898 138504917 CAGTCTCTGGTTTCTATCCC 57 NA Rattus norvegicus 81 Abcc4 ENSRNOG00000010064 ENSRNOT00000031036,ENSRNOT00000013366 3 2 2 80 15 103832116 103836648 TCTGGGACAAGGCATTAGAC 60 103832055 103832073 CGACCACAGCTAACAACTC 59 NA Rattus norvegicus 81 Mrpl20 ENSRNOG00000018647 ENSRNOT00000025213 3 1 1 84 5 173250810 173252431 TAGTTAAGTGCCAGGTGGA 58 173252478 173252497 GCAGCCAAAGATTTAAACGT 58 NA Rattus norvegicus 81 Olr1468 ENSRNOG00000052919 ENSRNOT00000026857 2 1 1 80 10 59973589 60126623 TCTATGCCCTGTTCCTGTC 59 59973527 59973547 GGGAATCCAGTAGAATGAGGA 59 NA Rattus norvegicus 81 Rhox13 ENSRNOG00000028050 ENSRNOT00000035489 2 1 1 80 X 124270905 124274048 TGAAGTCAAAGTGAAGGTGTG 59 124274087 124274108 ATATTTCTCAGCATTGCTCGTC 59 NA Rattus norvegicus 81 Lrrc51 ENSRNOG00000020124 ENSRNOT00000027261 2 1 1 80 1 167000534 167000553 TACAGCACCCAGAGAATCTG 59 166998608 167000494 AGAATGTTGTTAGAACAGGGTC 58 NA Rattus norvegicus 81 Zbtb25 ENSRNOG00000006441 ENSRNOT00000008424,ENSRNOT00000089594 3 2 2 87 6 99388227 99388245 ACGTTTACTTCAAAGCCCA 58 99382695 99388177 ATGCATTCACTTGTTTGGTG 58 NA Rattus norvegicus 81 Cep41 ENSRNOG00000010950 ENSRNOT00000014621 1 1 1 80 4 57979418 57979437 ATTCAAGTTGCTTCCCTGTC 59 57974303 57979375 TGCAGAATCACTGTCTTCG 58 NA Rattus norvegicus 81 LOC100912289 ENSRNOG00000026440 ENSRNOT00000036657 2 1 1 60 1 201901488 201901509 CAGTTCTTCATCAGACCAAGAC 59 201901529 201901548 TCGTGTCATCTTCAGAGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr252 ENSRNOG00000036787 ENSRNOT00000055174 2 1 1 60 1 172395142 172395162 ACAGAAAGCCTTCTCTACCTG 60 172395102 172395122 GGTTCCATAGAACAGAGTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akt3 ENSRNOG00000021497 ENSRNOT00000085648,ENSRNOT00000057879 3 2 2 80 13 95208262 95208281 TCAGATGTCTTCAGTGGACC 59 95196386 95208223 CTTCTGTCCATTCTTCTCTTTCC 59 NA Rattus norvegicus 81 Shroom3 ENSRNOG00000002208 ENSRNOT00000003001 1 1 1 80 14 16623941 16625553 GAAGAAAGGAGTTCTCTGAATGAG 59 16623884 16623902 CAGGTTCTCCTTGAGCTCC 60 NA Rattus norvegicus 81 Slc6a19 ENSRNOG00000026501 ENSRNOT00000036714 3 1 1 80 1 32213536 32213696 GTGAACACGAACATCCTGAC 59 32213739 32213757 ATAGGCCTCGAAGTTCTCC 59 NA Rattus norvegicus 81 Psd ENSRNOG00000019435 ENSRNOT00000026378 2 1 1 80 1 266068429 266068448 CCTAGCCAAGAGGCTATACC 59 266068233 266068388 CTGAAGTCATTGTTCTTGCCC 60 NA Rattus norvegicus 81 Mir449c ENSRNOG00000036435 ENSRNOT00000054547 1 1 1 60 2 44896103 44896121 TGGCTGTTAGAACTTCGTC 58 44896145 44896163 CTTCTAAGTGCAGCAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lpgat1 ENSRNOG00000004402 ENSRNOT00000064492 1 1 1 80 13 110462436 110465139 ATAAGACAGGAGCCTTTCCTC 59 110465181 110465199 GTATCCACACGTTGCTGAG 59 NA Rattus norvegicus 81 Rrp9 ENSRNOG00000012927 ENSRNOT00000017469 3 1 1 81 8 115185197 115185216 ATTACGTGCTTGGTCATCAC 59 115185257 115186006 CTACACTCCACTTTATGATGGT 58 NA Rattus norvegicus 81 Suv420h2 ENSRNOG00000017508 ENSRNOT00000023744 2 1 1 80 1 72672200 72672366 CATAAGATGAATGTCAGCCCT 58 72672140 72672158 TTGCCTTAGGAAAGCTTCC 58 NA Rattus norvegicus 81 Zfp473 ENSRNOG00000026572 ENSRNOT00000037973 1 1 1 105 1 100739047 100741342 CAGTGATGAAGCGACTGAG 58 100738960 100738978 AAAGTTGAGTTCCTCCGTG 58 NA Rattus norvegicus 81 Smim8 ENSRNOG00000023035 ENSRNOT00000087057 3 1 4 61 5 50232937 50232955 AACCTTGTTTCGAGCTGTG 59 50232243 50232915 GTCATGGTTGATACAGAACAGG 59 NA DesignRelaxed Rattus norvegicus 81 Prdm5 ENSRNOG00000023679 ENSRNOT00000009569 3 1 1 80 4 96739886 96739906 AAGAGAAAGCTCATATGCTCG 58 96739946 96744228 CTCATGAATCTTCCTGTGCTC 59 NA Rattus norvegicus 81 LOC100912429 ENSRNOG00000046920 ENSRNOT00000075184 1 1 1 80 15 19278211 19281263 CAAAGTGAAGCAGGAACGG 60 19278149 19278169 TGCTCCTGTTCTGATAACTCC 60 NA Rattus norvegicus 81 Samd15 ENSRNOG00000050413 ENSRNOT00000074634 1 1 1 128 6 111224620 111224639 GGACGTAGACATCCTAGGAG 59 111225596 111241159 AGATGGGAGCCTTCATGTC 59 NA InUTR Rattus norvegicus 81 Zbtb8b ENSRNOG00000026898 ENSRNOT00000037106 1 1 1 67 5 147634798 147634819 GTTCAGAACGACTGGTATAGAG 58 147630935 147630953 CACTTGTGGAGCTTGATGG 59 NA DesignNoJunction Rattus norvegicus 81 AABR07041140.1 ENSRNOG00000006459 ENSRNOT00000050793 3 1 1 112 X 120314468 120314488 ATAAAGACATTGTGGCTGAGG 58 120314562 120314583 GCACCTGTATTTCTTGATTTGC 59 NA DesignNoJunction Rattus norvegicus 81 Gid4 ENSRNOG00000003847 ENSRNOT00000005237 3 1 1 80 10 46791431 46798900 CTTACAGAGGAATATCCAACCCT 60 46798938 46798958 CTTCCGAGTTAAGAAAGGGTG 59 NA Rattus norvegicus 81 Plekhg3 ENSRNOG00000006570 ENSRNOT00000008573 1 1 1 80 6 99642996 99643267 AACAATACAGTATCCAGGCCA 59 99643308 99643327 GATTCTCCAGGATGAGCCTC 60 NA Rattus norvegicus 81 Tas2r117 ENSRNOG00000033896 ENSRNOT00000040828 3 1 1 60 4 166987218 166987240 TAGGAGACATGAAGATGAGACAG 59 166987260 166987278 TTCCTGAATTTCTGCCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pemt ENSRNOG00000054423 ENSRNOT00000083698 2 1 1 80 10 46352933 46399239 TGGAATGTGGTAGCAAGGT 59 46352871 46352891 GGAATAGCAGGCTAGGTAAGG 60 NA Rattus norvegicus 81 Olr607 ENSRNOG00000050737 ENSRNOT00000007782 2 1 1 60 3 76250694 76250713 GGAACCTTGGGATGATAGTG 58 76250653 76250671 AAGTACATGGGAGTGTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc35f4 ENSRNOG00000014982 ENSRNOT00000020175 1 1 1 80 15 26153838 26157074 ATGGCTAGCATTCAACATCC 58 26153777 26153797 CTGAGTACTGTTCCAATGGAG 58 NA Rattus norvegicus 81 Slc35f4 ENSRNOG00000014982 ENSRNOT00000020175 2 1 1 80 15 26157254 26159127 ATCTGCACTGTATAAGGTTCTG 58 26157195 26157214 AAGGTAGAGACAAAGTGTGC 58 NA Rattus norvegicus 81 Olr91 ENSRNOG00000048810 ENSRNOT00000075766 3 1 1 60 1 168447755 168447774 CTCTGTTTAGCCATTGCTCC 59 168447794 168447815 CCATAGAACATGAACCAAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chaf1a ENSRNOG00000046479 ENSRNOT00000071107 1 1 1 80 9 11005796 11006048 GACATCATGAACAGGGATGTG 59 11005736 11005755 CATTCGGCCAAACTTCTTCC 60 NA Rattus norvegicus 81 Abcb11 ENSRNOG00000050860 ENSRNOT00000075107 3 1 1 80 3 55551687 55551707 CTAACCTTGGTGATTCTTGCT 58 55548425 55551647 CGTGAACTTGGCTATACTCAG 59 NA Rattus norvegicus 81 Gbp2 ENSRNOG00000031743 ENSRNOT00000068683 2 1 1 80 2 248291135 248291433 GGAGATTGAAGTGGAACGG 58 248291476 248291495 TCAAACTTCTCCTGCTTCTC 58 NA Rattus norvegicus 81 Gbp2 ENSRNOG00000031743 ENSRNOT00000068683 3 1 1 80 2 248291138 248291440 GATTGAAGTGGAACGGATTAAGG 60 248291480 248291498 AGCTCAAACTTCTCCTGCT 59 NA Rattus norvegicus 81 Haus5 ENSRNOG00000024266 ENSRNOT00000031044 1 1 1 80 1 89119425 89119443 AAGCCAAAGTGGATGTGAC 58 89119274 89119381 CTCGGACATCACTCAACAC 58 NA Rattus norvegicus 81 Ankrd13d ENSRNOG00000028247 ENSRNOT00000025641 1 1 1 80 1 219530137 219530155 CAGTCGACTCACTTCTCCT 59 219523842 219530097 CAGATACCACATTTGTTCCTCTC 59 NA Rattus norvegicus 81 Stk16 ENSRNOG00000019294 ENSRNOT00000026194 3 1 1 81 9 82413221 82413600 CTGATGTCTGGTCCCTAGG 59 82413645 82413663 TCACCTTTCTGGAACACCA 59 NA Rattus norvegicus 81 Fam71a ENSRNOG00000029371 ENSRNOT00000043672 2 1 1 60 13 109768723 109768742 TAGAGACTACTGGAAAGCCT 57 109768682 109768700 GAAAGGATGACTGGGACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vopp1 ENSRNOG00000006646 ENSRNOT00000008885 2 1 1 87 4 88441268 88469741 TAATGGAGTGCACAGAGGC 60 88483667 88483686 CAGTCTTCATAGGAACGGCA 60 NA Rattus norvegicus 81 AABR07072118.1 ENSRNOG00000047955 ENSRNOT00000049304 3 1 1 80 10 44187970 44187988 ACTCCGTTATCCTGTCCTC 58 44188032 44188051 AACATGAAGCCATCCAGGA 59 NA Rattus norvegicus 81 Rab18 ENSRNOG00000018972 ENSRNOT00000025828 1 1 1 80 17 59861227 59869926 CAATATGGGATACAGCTGGTC 58 59869965 59869986 CTAATATAACTCCCTGTGCACC 58 NA Rattus norvegicus 81 LOC100911293 ENSRNOG00000027295 ENSRNOT00000024207,ENSRNOT00000057704,ENSRNOT00000024176 1 3 3 80 8 72479966 72479986 GCTGTGAGAAGAATAAGTGGT 58 72477107 72479926 GACTTAGTAAAGTCTGGGTGG 58 NA Rattus norvegicus 81 Olr635 ENSRNOG00000055872 ENSRNOT00000084374 3 1 1 60 3 76790592 76790612 AGCACATCTGTGGTATATTGG 58 76790632 76790652 GCTGAAGAGTGGATACAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ahsg ENSRNOG00000038370 ENSRNOT00000078203,ENSRNOT00000058422 1 2 2 80 11 81714671 81714998 ATTCCACACCAGACTCTGC 60 81714609 81714627 CGTTGGTGTCATTGAACCG 60 NA Rattus norvegicus 81 Lpl ENSRNOG00000012181 ENSRNOT00000016543 2 1 1 80 16 22546243 22546261 ACAAGGTCAGAGCCAAGAG 59 22543687 22546205 CTTGGTAATGGAATACTTTGTAGGG 60 NA Rattus norvegicus 81 Ttll5 ENSRNOG00000009318 ENSRNOT00000012895 2 1 1 80 6 109744211 109744231 AGGATTATGGGAACAAGTGGA 59 109744271 109745188 CCATCAATGCAGTTGTATCCT 59 NA Rattus norvegicus 81 Nupr1 ENSRNOG00000019206 ENSRNOT00000025988 2 1 1 112 1 194768973 194769331 TCTTATGTCGTCGGTGGAG 59 194768879 194768897 TTCTGGAACTTGGTCAGCA 59 NA Rattus norvegicus 81 LOC100912186 ENSRNOG00000050613 ENSRNOT00000071489 3 1 1 60 4 1611811 1611830 TATGTACCTAAAGCCCTCCT 57 1611851 1611871 GAAGACAGAAGACACTTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fuz ENSRNOG00000053084 ENSRNOT00000086890,ENSRNOT00000083336 1 2 2 80 1 100892443 100892652 CTTCCATGACAGCATCACC 59 100892695 100892714 ATGTGGAGCATTCTTTCCAG 58 NA Rattus norvegicus 81 Samd4a ENSRNOG00000010489 ENSRNOT00000089226,ENSRNOT00000060847,ENSRNOT00000092091 2 3 3 80 15 23830046 23840165 AGTGGTATGAAAGATGTTCCAG 58 23840203 23840224 GTAAGTCATCTGTGAGAAGAGC 59 NA Rattus norvegicus 81 Mmp10 ENSRNOG00000032832 ENSRNOT00000013119 1 1 1 86 8 5735343 5735454 CACATCTCCTACAGGATTGTG 58 5735502 5735520 CCAGACCTTCAAAGCTCTC 58 NA Rattus norvegicus 81 Usp10 ENSRNOG00000016509 ENSRNOT00000022432 1 1 1 80 19 52591651 52596978 AGATTGCAGAGTTATTGGAGAC 58 52597017 52597037 TTCCTTTATTGATCAGCCCAC 58 NA Rattus norvegicus 81 Klhl21 ENSRNOG00000003334 ENSRNOT00000004508 1 1 1 80 5 169185233 169186874 ACTTCGTCAGGGATGACTC 59 169186915 169186936 GGTTCATAGATGGGATCTTGTC 58 NA Rattus norvegicus 81 Relt ENSRNOG00000025075 ENSRNOT00000038408,ENSRNOT00000077661 3 2 2 130 1 165886104 165886123 GAGAGCGATCTTCCTGAGTC 60 165885856 165886011 ACATAGCGGTTCTCCTCAG 59 NA Rattus norvegicus 81 Anapc13 ENSRNOG00000008459 ENSRNOT00000011203 2 1 1 81 8 111111129 111115345 CGATTCCACTGAGTGAGCT 60 111115386 111115408 CACTTCATCTCCTGTTCTTTCAC 60 NA Rattus norvegicus 81 Prr20e ENSRNOG00000026675 ENSRNOT00000039058 2 1 1 82 4 121046321 121052114 CCATCAAGACTCCGATGAG 57 121052158 121052178 CTGACTCATCTACTTCCACTG 58 NA Rattus norvegicus 81 Zbtb48 ENSRNOG00000009595 ENSRNOT00000012745 3 1 1 80 5 169193751 169194101 GAGATGCCCTACAAGTGCT 60 169193689 169193707 ATGCAGCTTGATCATGTGG 59 NA Rattus norvegicus 81 Srgap2 ENSRNOG00000006733 ENSRNOT00000085967,ENSRNOT00000086928,ENSRNOT00000008976 1 3 3 80 13 48077272 48079185 AAGTGACGATGAGTGTGAG 57 48077210 48077228 TTGAAAGACAGTTCTCGGG 57 NA Rattus norvegicus 81 Srgap2 ENSRNOG00000006733 ENSRNOT00000085967,ENSRNOT00000086928,ENSRNOT00000008976 3 3 3 80 13 48128374 48134922 AGCTTTATTCGGTCATGAAGAC 59 48128315 48128335 TCTCTGCTTCCTTTAGTTTGC 59 NA Rattus norvegicus 81 RGD1561226 ENSRNOG00000048835 ENSRNOT00000040280 2 1 1 85 14 15724262 15725030 TGAATCAAGTCCTAGGGTGC 60 15725077 15725096 GGAATCCAAGTCGTTCTGTG 59 NA Rattus norvegicus 81 Btbd9 ENSRNOG00000000540 ENSRNOT00000000649 2 1 1 80 20 9195684 9195707 GTGATAGATCACTCACATTACCTG 59 9019848 9195647 TATTCGAATGTACCTGCAGAC 58 NA Rattus norvegicus 81 Tmem147 ENSRNOG00000021006 ENSRNOT00000028514 3 1 1 85 1 89178335 89178353 GACCTGTACCACACCTTCC 60 89178183 89178287 TGGACAAAGGTCTCCATGAC 60 NA Rattus norvegicus 81 Chac2 ENSRNOG00000001531 ENSRNOT00000002094 1 1 1 69 14 115386444 115391515 AGCCTGGAAGAGTTGTGAC 60 115384909 115384929 GGTAGTTTGTAAGCAACACCC 60 NA DesignNoJunction Rattus norvegicus 81 Rbp4 ENSRNOG00000015518 ENSRNOT00000021055 1 1 1 80 1 256812973 256812991 AGACACAGAAGATCCTGCC 59 256808308 256812929 CAGTGGTCATCGTTTCCTC 58 NA Rattus norvegicus 81 Olr531 ENSRNOG00000057929 ENSRNOT00000090836 3 1 1 60 3 74544336 74544360 GATATACAGCCTTAGAAACAAGGAG 59 74544300 74544323 CTTTATAGGTAGCAGCTTTCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1309995 ENSRNOG00000008331 ENSRNOT00000011326 1 1 1 80 7 26340039 26344598 CTCACCAAAGATGTGCAGTC 59 26339978 26340002 CTGCTCTTTAGATAACATAGACTCC 59 NA Rattus norvegicus 81 Slc39a14 ENSRNOG00000009832 ENSRNOT00000013067 3 1 1 80 15 51987526 51987544 CACTTCTCTGCAAACTGGA 58 51986136 51987483 CATCTCAGGGAACATATCGG 58 NA Rattus norvegicus 81 Mgrn1 ENSRNOG00000003234 ENSRNOT00000004416,ENSRNOT00000087118 3 2 2 80 10 10857695 10857714 ATGAGCCAGTGAAGACACTC 60 10857125 10857655 CTGTGTCATCTTTGTACCTCAC 59 NA Rattus norvegicus 81 Fancd2 ENSRNOG00000061085 ENSRNOT00000082618 2 1 1 80 4 145521256 145521959 AAGCCAGAAATCAATGTCTCC 59 145522001 145522019 CCGTTATGTTGTCTTGCCA 59 NA Rattus norvegicus 81 Cltc ENSRNOG00000004291 ENSRNOT00000005987 1 1 1 80 10 74025079 74025097 TCACCTTGGCGAGTATCAG 59 74024893 74025035 GCAAAGCAGACCTCTTTCC 59 NA Rattus norvegicus 81 Ube2a ENSRNOG00000039985 ENSRNOT00000083861,ENSRNOT00000061455 3 2 2 80 X 123495226 123496117 CACCCTAACGTCTATGCAG 58 123496159 123496179 GGAAGACACATCATAGGTTGG 59 NA Rattus norvegicus 81 Pomc ENSRNOG00000012686 ENSRNOT00000016976 3 1 1 154 6 28386264 28386282 GACCTCCATAGACGTGTGG 60 28388145 28388163 TCAAGGGCTGTTCATCTCC 59 NA DesignNoJunction Rattus norvegicus 81 Rab7b ENSRNOG00000039754 ENSRNOT00000009280 1 1 1 80 13 48466182 48474081 TGGAAGATAGGAAGGTGCC 59 48474122 48474143 TCGCACTAACTTCAAAGTATGG 59 NA Rattus norvegicus 81 Rab7b ENSRNOG00000039754 ENSRNOT00000009280 2 1 1 80 13 48466180 48474080 TCTGGAAGATAGGAAGGTGC 59 48474120 48474141 GCACTAACTTCAAAGTATGGCA 59 NA Rattus norvegicus 81 LOC688613 ENSRNOG00000043197 ENSRNOT00000064487 3 1 1 68 7 123482572 123482591 ATGACAGATGCAGAGAACCC 60 123489568 123489586 AAACCAGTCCAGAAAGTGC 58 NA DesignNoJunction Rattus norvegicus 81 Ces4a ENSRNOG00000014257 ENSRNOT00000019169 3 1 1 81 19 37105229 37105829 GCGATATCACCGAGATGCT 60 37105873 37105892 TCGAGGTTTGACAATGATGC 59 NA Rattus norvegicus 81 Diaph3 ENSRNOG00000008986 ENSRNOT00000087940 1 1 2 95 15 70349978 70373802 CTGACAGATGATATGCTGGAC 58 70349903 70349921 AGACACAGTCTTCAGCTGG 59 NA Rattus norvegicus 81 Chdh ENSRNOG00000015859 ENSRNOT00000021407 3 1 1 81 16 6107006 6107024 GGCTGAAACTGAGAAGCAC 59 6107069 6107625 TCCTCGACATCGGTTTCTG 60 NA Rattus norvegicus 81 Txnrd3 ENSRNOG00000059810 ENSRNOT00000077374,ENSRNOT00000084494 1 2 2 80 4 121649213 121649232 AATGAAATGTGGGCTTACGA 58 121649272 121649809 ATGGTTGTAAATACCTCACCAC 59 NA Rattus norvegicus 81 Alx1 ENSRNOG00000004390 ENSRNOT00000006007 1 1 1 80 7 44767509 44767531 CATTACCCGGATGTATATGTCAG 59 44764696 44767469 TTGAAACCAAACCTGGACC 58 NA Rattus norvegicus 81 Rnase3 ENSRNOG00000031445 ENSRNOT00000040857 1 1 1 65 15 28217591 28217609 TGATTTCCAGGACAGCCAG 60 28217384 28217562 AGACCCATGTTTCCCAGTG 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 Mogat1 ENSRNOG00000014692 ENSRNOT00000082378 2 1 2 80 9 84412636 84418294 ATTGATCTACACTGTTGTTGGC 59 84418335 84418353 TGCAGCTCATCAATCTGCT 60 NA Rattus norvegicus 81 LOC687560 ENSRNOG00000050028 ENSRNOT00000071344 3 1 1 80 19 53471875 53472544 TCACAGAAGAAGGTAGCGA 58 53468981 53468999 GCCATACCATCTGCTTGAG 58 NA Rattus norvegicus 81 Ngb ENSRNOG00000011719 ENSRNOT00000016057,ENSRNOT00000081727 3 2 3 90 6 111128698 111128716 AGGACCTGTCTTCACTGGA 60 111127274 111128643 CACCTACTGTCGAGAAGGAG 59 NA Rattus norvegicus 81 Mthfd2l ENSRNOG00000021347 ENSRNOT00000081455,ENSRNOT00000047708 3 2 2 86 14 18660373 18680877 TAGTGGCTGCAGGTATTCC 59 18660305 18660323 GTACGTAGTTGATGCCCAC 58 NA Rattus norvegicus 81 Slirp ENSRNOG00000012314 ENSRNOT00000016479 3 1 1 91 6 111476884 111476902 AAAGGACTAACTGCGTTGC 59 111476956 111480921 TCTCTTAGCTCACTCGATGC 59 NA Rattus norvegicus 81 Ctrl ENSRNOG00000019353 ENSRNOT00000026361 2 1 1 81 19 37906020 37906121 CTCCTCATGTCAGGGTGAC 60 37905957 37905978 CCAGGAGACAATACCAATAAGC 59 NA Rattus norvegicus 81 Crispld2 ENSRNOG00000016752 ENSRNOT00000068389,ENSRNOT00000087857,ENSRNOT00000082754 2 3 3 93 19 52671158 52671176 AGGCTCCCTACAAACATGG 59 52671231 52675781 TAGTGCTCTTCTCGGTAACAC 60 NA Rattus norvegicus 81 Mei1 ENSRNOG00000007003 ENSRNOT00000009428 1 1 1 80 7 123310688 123314894 CCTCTGTATTGAAGTCCTTATCC 58 123314933 123314952 TGACACTCATTCAGTAGGCA 59 NA Rattus norvegicus 81 Gpbar1 ENSRNOG00000058260 ENSRNOT00000089698 2 1 1 60 9 81559773 81559792 CTACTAGCTGGGCTACTCAC 59 81559815 81559833 TCCTATTCCATAGCCCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fndc9 ENSRNOG00000006549 ENSRNOT00000008559 1 1 1 60 10 31324536 31324555 TCTTATACAGGAGCCATCGT 58 31324578 31324596 GGTAGTAGTCCTCCAAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fndc9 ENSRNOG00000006549 ENSRNOT00000008559 3 1 1 60 10 31324589 31324613 CTACTACCATATTATGTATAGGCCC 58 31324631 31324649 ATAGCGCAGATAGCTGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rfc4 ENSRNOG00000001816 ENSRNOT00000002487 3 1 1 80 11 81370755 81370774 CGTGGAATACAAGTAGTCCG 58 81370817 81371745 TGGTTTCCCATCTGAACGA 59 NA Rattus norvegicus 81 Pla2g15 ENSRNOG00000019859 ENSRNOT00000026996 1 1 1 80 19 38134082 38141688 CTGGATTGACAATATCAGGCTG 59 38141729 38141747 GGAACACGCACATCTACAC 59 NA Rattus norvegicus 81 Micu1 ENSRNOG00000043436 ENSRNOT00000082734,ENSRNOT00000067405 3 2 2 80 20 29365566 29366420 GTTTGAGCAGGTTCAAAGC 58 29366464 29366482 GTGTTCCCAGTAGTTGGAC 58 NA Rattus norvegicus 81 Pik3ap1 ENSRNOG00000013309 ENSRNOT00000017938,ENSRNOT00000065632,ENSRNOT00000077962 3 3 3 80 1 260575093 260577812 GAGTATGTGGAGACCGTGG 60 260575031 260575049 ATACACATCGTCAGCCTCC 59 NA Rattus norvegicus 81 Olr1378 ENSRNOG00000030412 ENSRNOT00000042582 2 1 1 60 10 12731392 12731414 CTCATAGCTCAACTCTCATTCTG 59 12731354 12731373 TCACATCACAGAAGAAGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r2 ENSRNOG00000001733 ENSRNOT00000002361 1 1 1 80 11 73022106 73022128 CATATCATCCAGCTGACAAAGAC 60 73022162 73025627 CATCACCTATCATATTGTGGTATGG 59 NA Rattus norvegicus 81 AC094212.1 ENSRNOG00000055222 ENSRNOT00000091773 2 1 1 73 8 26342525 26345544 AATTCAAGGAAGTTCTTCGTCG 59 26342473 26342491 CAGATGAGTTCTCCCAGGC 60 NA DesignRelaxed Rattus norvegicus 81 RGD1565904 ENSRNOG00000049116 ENSRNOT00000073735 1 1 1 80 11 83881065 83881168 AGACTTAGGTGACAAGTTCCG 60 83881005 83881025 GGGTTGTATTCACCATCATCC 59 NA Rattus norvegicus 81 LOC686900 ENSRNOG00000049864 ENSRNOT00000072638 2 1 1 60 3 77226268 77226289 CCACTCATCTTTACCTATGTCC 58 77226229 77226249 GAGCAAATACCTTGTCATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nrm ENSRNOG00000000818 ENSRNOT00000001085 2 1 3 81 20 3399055 3399073 CTGGCTCCTTATCTTCAGC 58 3398693 3399012 CAGCACATGGTAATAAACCTG 57 NA Rattus norvegicus 81 Olr223 ENSRNOG00000019583 ENSRNOT00000026488 2 1 1 60 1 171027901 171027921 ATCTATGCAGTCTTCACTCCC 59 171027861 171027880 CTTCTTTGTTCCTCAGGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp512 ENSRNOG00000039815 ENSRNOT00000006658 1 1 1 80 6 26300685 26314107 TGGGAGCTAAGAATAACAGGA 58 26300625 26300644 TCAAGGAGTCTTCATGAGGG 59 NA Rattus norvegicus 81 Nfam1 ENSRNOG00000022975 ENSRNOT00000037681 1 1 1 80 7 123878294 123878313 AGGCACTTACTACTGCAGAG 59 123876951 123878251 TACCCTGTGTCTCTGACCA 60 NA Rattus norvegicus 81 LOC100909453 ENSRNOG00000048482 ENSRNOT00000041532 1 1 1 88 12 5132809 5132827 CCCTTATGGTCCAGTAGGT 58 5132879 5187799 ATACAGACCTGGGAGTCTC 58 NA Rattus norvegicus 81 Sar1a ENSRNOG00000000557 ENSRNOT00000079584,ENSRNOT00000000674 1 2 3 92 20 31268780 31268800 GATGTTCCAATTTACGCAGAC 58 31275564 31276863 GTCCTTTGTAGCAATCTCCA 58 NA Rattus norvegicus 81 Usp12 ENSRNOG00000033411 ENSRNOT00000044038 2 1 1 82 12 10085223 10085242 TTAACACTTCAGGAGACGCA 59 10085287 10086413 ATTGGGACCACTTCCACAG 60 NA Rattus norvegicus 81 AABR07029933.3 ENSRNOG00000056846 ENSRNOT00000087783 2 1 1 60 10 60503716 60503739 GTCTGTAGTATCACTGTTCTATGG 58 60503679 60503702 ATTACCTGCTGGACATAAGTAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc22a6 ENSRNOG00000018215 ENSRNOT00000024757 2 1 1 80 1 224830495 224830633 TAATACCGAAGAGCCATACGA 59 224830675 224830693 TGCAGTTGAAAGAGGAAGC 58 NA Rattus norvegicus 81 Aoc1 ENSRNOG00000008575 ENSRNOT00000059136,ENSRNOT00000082905 3 2 2 81 4 78514247 78514265 TCCATTCTATGGCTGAGCA 59 78514310 78514630 ACAGCCAAAGGATACCTGG 59 NA Rattus norvegicus 81 Rpl37 ENSRNOG00000034180 ENSRNOT00000046519 3 1 1 60 10 64336410 64336429 GCACCTAAAGATCGTCTACC 58 64336450 64336470 TTTAGGTGTTGTTCCTTCACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem55b ENSRNOG00000009948 ENSRNOT00000013225 1 1 1 80 15 27854432 27854451 CTCTGAGTCCAGAACCACAG 60 27854211 27854391 TGAATTCTGTCCACAGAAACG 59 NA Rattus norvegicus 81 Mef2bnb ENSRNOG00000020427 ENSRNOT00000064090 3 1 1 90 16 21026974 21026992 CTTGCCAATGAGCCATCAG 59 21026422 21026920 GCATATCAGCCTTGTGCTG 59 NA Rattus norvegicus 81 Tril ENSRNOG00000026941 ENSRNOT00000036951 2 1 1 60 4 83972092 83972110 TGGATCTGCAGTACAACCA 59 83972050 83972068 CTGGAGAGCTTCTCGAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ckm ENSRNOG00000016837 ENSRNOT00000022895 2 1 1 80 1 80329244 80329262 TCTCCATGGAGAAAGGAGG 58 80329303 80330000 TGAAGATCTCCTCAATCTTCTG 57 NA Rattus norvegicus 81 Foxe3 ENSRNOG00000007770 ENSRNOT00000010208 1 1 1 69 5 133725426 133725444 TCTTATCGCTATGGCCCTG 59 133725375 133725393 GATGAAGCGGTAGATGGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpsm1 ENSRNOG00000018666 ENSRNOT00000067840,ENSRNOT00000084567 1 2 2 84 3 3791477 3792895 CAAATACCAGTCCTCCAGGA 59 3792942 3792960 ATCCTCATCAGGCATGGTG 60 NA Rattus norvegicus 81 Gpsm1 ENSRNOG00000018666 ENSRNOT00000067840,ENSRNOT00000084567 2 2 2 85 3 3791478 3792895 AAATACCAGTCCTCCAGGA 57 3792944 3792962 AAATCCTCATCAGGCATGG 58 NA Rattus norvegicus 81 Ggt7 ENSRNOG00000018441 ENSRNOT00000025315 3 1 1 82 3 151012318 151012336 TTCTCAACAGCCAGATGCT 59 151011551 151012272 CTGTACCGAGTTCTCCAGG 59 NA Rattus norvegicus 81 Slamf7 ENSRNOG00000023209 ENSRNOT00000038006,ENSRNOT00000088884 3 2 2 82 13 90067142 90067160 GCAGAGATTCACATTGCGT 59 90065405 90067096 CTTGACAGGTGCTCATGGA 60 NA Rattus norvegicus 81 Armc6 ENSRNOG00000020280 ENSRNOT00000027550 3 1 1 80 16 20945054 20945074 AACATTGTGAAGACAGTACCG 59 20945115 20948878 ATCATTGAGAGCCTGTAGGA 58 NA Rattus norvegicus 81 Pigw ENSRNOG00000027857 ENSRNOT00000029769 3 1 1 60 10 72195526 72195544 AAATGCTAACCGAGAGGGA 58 72195484 72195503 ACCAGCCATGTATATTGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc3c ENSRNOG00000031298 ENSRNOT00000039892 1 1 1 60 10 86565315 86565333 CTGCAGATCCAAGTGAACC 59 86565357 86565375 CTTCCTGTAGGGCACAGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cox18 ENSRNOG00000003052 ENSRNOT00000004074 1 1 1 80 14 19435126 19436366 TTACATCCTTGCTAAGGTGGA 59 19436408 19436426 CAGACTGCAACTTCTTGGT 58 NA Rattus norvegicus 81 LOC502176 ENSRNOG00000030321 ENSRNOT00000045098 2 1 1 80 18 60748574 60767090 TTTCTTATTTCCTCCGCCTC 58 60767132 60767151 GAGTTCATAGATGGCGATCC 58 NA Rattus norvegicus 81 LOC502176 ENSRNOG00000030321 ENSRNOT00000045098 3 1 1 81 18 60745193 60748505 CAACAAGGCAGGCTTTACAG 60 60748548 60748567 GTGGTGTTTGTCTTTCTGGG 59 NA Rattus norvegicus 81 Zc3h14 ENSRNOG00000004083 ENSRNOT00000040440,ENSRNOT00000039509,ENSRNOT00000078050 1 3 3 94 6 122763601 122764880 ATTTCACCTTGCAAAGCCT 58 122764937 122764956 GCTTTAGTACACTTTGCGTC 58 NA Rattus norvegicus 81 LOC100364634 ENSRNOG00000049529 ENSRNOT00000039088 2 1 1 60 1 66774526 66774544 TTTCCAACACTCAGTCCCT 59 66774484 66774504 AGCAACAGTGAGAAGAATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhdc4 ENSRNOG00000046599 ENSRNOT00000065472 1 1 1 60 19 54652215 54652235 AGATGGAGAAGAAAGTGTCCA 59 54652025 54652043 GTAAACGAGGAGTCTCGGG 60 NA DesignNoJunction Rattus norvegicus 81 RGD1560513 ENSRNOG00000033673 ENSRNOT00000052326 3 1 1 62 4 132296113 132296134 CGGGTCTACATCAACTATTACG 59 132296072 132296090 AAAGGTGGAACTGTTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fcgr1a ENSRNOG00000021199 ENSRNOT00000082450,ENSRNOT00000028780 1 2 2 80 2 198434469 198434487 CATCTATCACTGCTCAGCC 58 198432382 198434426 GTGGCAAATAGCTCTTTCAC 58 NA Rattus norvegicus 81 Cxxc1 ENSRNOG00000014614 ENSRNOT00000020472 1 1 1 80 18 70196363 70196381 CAGATTCCACGAGCTTGAG 58 70196423 70196518 TCATTCTCATTGTTCTCCTCG 58 NA Rattus norvegicus 81 RGD1562885 ENSRNOG00000030676 ENSRNOT00000079750,ENSRNOT00000039998 1 2 2 60 20 3689765 3689783 AAACCTCCTGGCTCTTCTG 59 3689723 3689741 CTAACCTGGCTCCAAACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psmc1 ENSRNOG00000003951 ENSRNOT00000005329 1 1 1 80 6 124133264 124135312 ACATCAAGGCAATCTGCAC 59 124135353 124135374 TCTTGAAGTCTTCGTTTGTCAC 59 NA Rattus norvegicus 81 Smco2 ENSRNOG00000026883 ENSRNOT00000034051 1 1 1 80 4 181249185 181252426 CTAAGAAATGGGATGGGTTGG 59 181252466 181252486 GAGTTACTTCTCGCTCATCCT 59 NA Rattus norvegicus 81 Tob2 ENSRNOG00000050500 ENSRNOT00000071998 3 1 1 256 7 123088214 123088232 GAATCACATGAGCTCGGTC 58 123081541 123081559 ACTTTGATCTCCAGCTGCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Polr3gl ENSRNOG00000021209 ENSRNOT00000085006,ENSRNOT00000028801 3 2 2 80 2 198704290 198704310 ACCATTATCCTTCCCAAGAGG 59 198704124 198704254 CTTCTCTAGAGTCTCTAGTTTCTGG 60 NA Rattus norvegicus 81 Kcnc3 ENSRNOG00000019959 ENSRNOT00000078153 2 1 3 105 1 100599242 100601337 AACCAACAGGGCAGTAGAC 60 100601406 100601424 GTCTTCTGGAGACATGGCT 59 NA Rattus norvegicus 81 Tfap4 ENSRNOG00000005227 ENSRNOT00000006979 1 1 1 91 10 11215981 11216359 TTATCCAGGAGCTGAGTGG 59 11216414 11216432 CTCATCCTCCCAGATGTCG 59 NA Rattus norvegicus 81 Lpar2 ENSRNOG00000010758 ENSRNOT00000083537,ENSRNOT00000068554 1 2 2 109 16 21347326 21347344 TTCTTCTTTGTGCGCAGAC 59 21345352 21347255 CCCAGAATGATGACAACTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lpar2 ENSRNOG00000010758 ENSRNOT00000083537,ENSRNOT00000068554 2 2 2 110 16 21347326 21347345 TTTCTTCTTTGTGCGCAGAC 60 21345352 21347255 CCCAGAATGATGACAACTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360997 ENSRNOG00000033801 ENSRNOT00000047082 1 1 1 90 15 29341809 29341827 TTTCACTGGTGGTCCTGTG 60 29341189 29341207 CCCTCTGGAACAGTGAGAG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100360997 ENSRNOG00000033801 ENSRNOT00000047082 3 1 1 92 15 29341809 29341827 TTTCACTGGTGGTCCTGTG 60 29341187 29341205 CTCCCTCTGGAACAGTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000023617,ENSRNOT00000090492,ENSRNOT00000088239 2 3 7 80 9 43625918 43625936 GAGCCAATGGTTGTGAGAG 59 43625977 43632707 GTAAATGGCTTCAATGGTTTCG 59 NA Rattus norvegicus 81 PVR ENSRNOG00000019202 ENSRNOT00000064305 1 1 1 80 1 80828807 80831011 CTTTCCCTACCTTATCCACC 57 80828746 80828764 CAGGTTCACGTTAGTGAGG 58 NA Rattus norvegicus 81 Vegp2 ENSRNOG00000033020 ENSRNOT00000041399 3 1 1 80 3 4220747 4221202 GAGAATCAGGATGTGTCAGGA 59 4220687 4220708 AGATCCAAACTTCTTGTCAGGA 60 NA Rattus norvegicus 81 Spa17 ENSRNOG00000010934 ENSRNOT00000014866 3 1 1 115 8 40071215 40071234 GCTTCTATAACAACCACGCA 59 40067254 40069303 AGTAGACTCCTCGAAGGGA 59 NA Rattus norvegicus 81 Ifitm3 ENSRNOG00000015078 ENSRNOT00000020265 3 1 1 82 1 213811572 213811590 GTCCCTGTTCAATACGCTC 58 213811002 213811526 TCCGATCCCTAGACTTCAC 58 NA Rattus norvegicus 81 Tagln ENSRNOG00000017628 ENSRNOT00000024030,ENSRNOT00000081737 1 2 2 82 8 50223421 50223762 GTTTATGAAGAAAGCCCAGGA 58 50223359 50223377 TTTGAAGGCCAATGACGTG 59 NA Rattus norvegicus 81 Tagln ENSRNOG00000017628 ENSRNOT00000024030,ENSRNOT00000081737 2 2 2 82 8 50223420 50223762 GTTTATGAAGAAAGCCCAGGAG 59 50223359 50223377 TTTGAAGGCCAATGACGTG 59 NA Rattus norvegicus 81 Plau ENSRNOG00000010516 ENSRNOT00000014273 1 1 1 80 15 3649717 3649887 GCTTCTGATGAATCAAACTGTG 58 3649658 3649676 GCATCTTCGAATGCTGGAG 59 NA Rattus norvegicus 81 LOC680663 ENSRNOG00000011120 ENSRNOT00000014811,ENSRNOT00000089579 2 2 2 80 X 110733045 110733862 CATCAGAAACACTTCAGAACG 58 110733901 110733922 TCCCTCTTTCATGATAATGACC 58 NA Rattus norvegicus 81 Ankrd49 ENSRNOG00000009233 ENSRNOT00000012583 1 1 1 80 8 13301310 13302313 AAGAATCGGCTTGCTACAG 58 13301248 13301270 GGTATATTCATCTTCGTCTCTGG 58 NA Rattus norvegicus 81 P2ry12 ENSRNOG00000013902 ENSRNOT00000018600 1 1 1 93 2 149442722 149444437 ATAACCAGGACCATGGAGG 59 149442647 149442665 TGTAGTCTCTGCTGCACAG 59 NA InUTR Rattus norvegicus 81 Trap1 ENSRNOG00000005418 ENSRNOT00000008966 2 1 1 80 10 11752193 11752530 CAGAAACAGACTGAGGTGC 59 11752574 11752592 CTTCTTGTCAAACTCCCGC 59 NA Rattus norvegicus 81 Tmem236 ENSRNOG00000037982 ENSRNOT00000057785 2 1 1 81 17 81305462 81305480 GTTCTGTTGTCCCTGATCG 58 81305522 81341424 TTTCATAACCCATTTGACTCCC 59 NA Rattus norvegicus 81 Cldn12 ENSRNOG00000039862 ENSRNOT00000061199 2 1 1 138 4 25686410 25686428 AGGCTGTTTGGAGAAACAC 58 25689207 25689225 GAAGAGGCCTGCTACAGAG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07017656.1 ENSRNOG00000047226 ENSRNOT00000073230 2 1 1 80 15 29712400 29712595 GATTTGCTGGGTGAGAGGA 59 29712338 29712359 CTCAGAGAAGAATTGGTTCCCT 60 NA Rattus norvegicus 81 Mtus2 ENSRNOG00000032410 ENSRNOT00000085869,ENSRNOT00000064721 1 2 2 80 12 8116099 8116118 AAAGATCCAGGTACTCCAGC 59 8114418 8116058 GACAGTTGTCTGGTAACAACC 59 NA Rattus norvegicus 81 Aes ENSRNOG00000052025 ENSRNOT00000092061 1 1 1 80 7 11014737 11015288 GGCATTACGTCATGTACTATGAG 59 11014526 11014546 TCAGCCTCTTCACAATTTCAG 59 NA Rattus norvegicus 81 Emc6 ENSRNOG00000019352 ENSRNOT00000026168 2 1 1 60 10 59742817 59742836 TCATCTTCTACCTGCTTGCC 60 59742776 59742796 CTTCCCGCTTTGAGAATTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kpna4 ENSRNOG00000010768 ENSRNOT00000014384 2 1 1 80 2 165702747 165702854 GACAATTCAGGAGATTCTTCCA 58 165700375 165700393 GCCCAGACAGTATCTACCA 58 NA Rattus norvegicus 81 Dhx32 ENSRNOG00000018119 ENSRNOT00000024655 3 1 1 80 1 205810522 205816353 CATCCTGAGGTACTGTACCG 59 205810461 205810481 ATGATGACACCATAGCTACCC 60 NA Rattus norvegicus 81 Fen1 ENSRNOG00000020531 ENSRNOT00000027842 1 1 1 96 1 226253444 226255659 TAGGAAGAAGCCATTGCTC 57 226253366 226253384 ATGTCATTCTCACGGATGG 57 NA InUTR Rattus norvegicus 81 H2afz ENSRNOG00000010306 ENSRNOT00000013919 1 1 1 91 2 243106073 243106091 TCTAGGACAACAAGCCACG 60 243106146 243106507 AACTCAAGTACCTCTGCGG 59 NA Rattus norvegicus 81 H2afz ENSRNOG00000010306 ENSRNOT00000013919 3 1 1 94 2 243106072 243106090 ATCTAGGACAACAAGCCAC 57 243106148 243106509 CCAACTCAAGTACCTCTGC 58 NA Rattus norvegicus 81 AC095263.1 ENSRNOG00000054374 ENSRNOT00000078918 3 1 1 81 20 7140682 7140700 GTATAGCTATGACCCGGCA 59 7140514 7140638 ATGAACCACCTTAGGGTCTC 59 NA Rattus norvegicus 81 Clstn1 ENSRNOG00000016398 ENSRNOT00000045063 3 1 1 80 5 166598102 166598122 GAAGTTCAAGCTCATTTGCTC 58 166598163 166599136 GTGTGGATCACATTCACCTC 59 NA Rattus norvegicus 81 LOC100360274 ENSRNOG00000047581 ENSRNOT00000050485,ENSRNOT00000061476,ENSRNOT00000079703 1 3 3 85 9 12476114 12476132 AGTGTCAATTCGAGAGGGA 58 12476181 12477188 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 Ttc7b ENSRNOG00000027300 ENSRNOT00000037902,ENSRNOT00000080950 2 2 2 80 6 124363431 124370669 ACCTTACCAATCCCAGTGAC 60 124363370 124363389 TTGTGTTAAGCTGTCGTCTG 59 NA Rattus norvegicus 81 LOC100910807 ENSRNOG00000028899 ENSRNOT00000049424 2 1 1 102 X 124393486 124393504 TCACTTGAACCAGGAAGCA 59 124393570 124395697 TTTCTACTCTCCATGCCGG 59 NA InUTR Rattus norvegicus 81 Mrgbp ENSRNOG00000045955 ENSRNOT00000073679 2 1 1 96 3 176088306 176088324 TTCAGCCAGAATATTGGGC 58 176088384 176089246 GAATCTCAGACTCGTGCAG 58 NA Rattus norvegicus 81 Tekt4 ENSRNOG00000018792 ENSRNOT00000025434 1 1 1 80 10 14832759 14832778 CCCAAACTCGACTTTACCAG 59 14832821 14833556 CGCTCATCAACCTGAACTG 59 NA Rattus norvegicus 81 Olr80 ENSRNOG00000015769 ENSRNOT00000021115 2 1 1 81 1 168283727 168283846 CAGGTCTCCATTTCACCCT 59 168283664 168283684 AGGAAATCCAATCCAGATGTG 58 NA Rattus norvegicus 81 Snx27 ENSRNOG00000020893 ENSRNOT00000028389,ENSRNOT00000071442 3 2 2 80 2 195751946 195751966 CATTAAAGCGGAGGAGAAGTC 59 195744622 195751908 CTTAGCATGTTGAGGTACATGAC 60 NA Rattus norvegicus 81 Galns ENSRNOG00000014461 ENSRNOT00000079641,ENSRNOT00000019528 1 2 2 80 19 55403429 55404126 CACATCATAGACAGGCCCA 59 55403367 55403385 GAGGTGTGCTTTGTACTGG 59 NA Rattus norvegicus 81 Ttll9 ENSRNOG00000008596 ENSRNOT00000064196,ENSRNOT00000083812 3 2 2 80 3 148462231 148469037 GATCATGAAACCTGTCGCC 59 148469080 148469099 TTCCTCCAGTCCATGATGTC 59 NA Rattus norvegicus 81 Vps13d ENSRNOG00000016443 ENSRNOT00000022185,ENSRNOT00000085291 1 2 2 80 5 163053571 163053591 CAGGAGGAAGTCTCTTAACTG 58 163048181 163053532 CAGTGTGGCTTATTTCTTTGTC 58 NA Rattus norvegicus 81 Tmem132b ENSRNOG00000038406 ENSRNOT00000071104 1 1 2 80 12 35971281 35971301 CAAAGGCAGATTGAACTGGA 59 35971216 35971234 GGTTGGCCTTTGTATTCCC 59 NA Rattus norvegicus 81 Tmem132b ENSRNOG00000038406 ENSRNOT00000058492 2 1 2 81 12 36313967 36313987 TGAGTGAACTCTTCGTCTCTG 60 36269516 36313925 ACTTCTGTGTCCATGGTGAG 60 NA Rattus norvegicus 81 Olr657 ENSRNOG00000045624 ENSRNOT00000043928 1 1 1 60 3 77389292 77389313 GTTTCTCAACAACTGTAGCTCC 60 77389253 77389271 ATAGAAGCCTCCTTCAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rdh16 ENSRNOG00000029651 ENSRNOT00000077912,ENSRNOT00000037218,ENSRNOT00000051075 3 3 3 83 7 71071179 71071661 GAACTACCTGGCATCTTATCTG 59 71071705 71071723 ATGCAGTCAGTCACCAGAG 59 NA Rattus norvegicus 81 Bmp8b ENSRNOG00000033209 ENSRNOT00000050949 2 1 1 80 5 140818129 140818595 ACCTAGGAATCTTTGATGATGG 58 140818636 140818654 CACGGAAGCTGACATACAG 58 NA Rattus norvegicus 81 Foxk2 ENSRNOG00000036663 ENSRNOT00000054919 3 1 1 83 10 110500090 110505772 GCTGGCAGAATTCAATCCG 60 110505819 110505837 CTTTGCCTGGTTCTTCCTG 59 NA Rattus norvegicus 81 Ddr1 ENSRNOG00000057125 ENSRNOT00000088130 1 1 6 81 20 3559077 3559097 CCTATAGTTTAAGCCTGCCCT 59 3559140 3562542 ACAGCATCTCCAAGGTAGC 60 NA InUTR Rattus norvegicus 81 AABR07034730.3 ENSRNOG00000057165 ENSRNOT00000038646 1 1 1 80 11 85508359 85508501 CCTTCATCACTTAACAGGGTC 59 85508543 85508561 ACTGTGCTTCCTAGAGACG 59 NA Rattus norvegicus 81 Crx ENSRNOG00000013890 ENSRNOT00000018858 2 1 1 80 1 77748321 77748339 GTACCCGGATGTGTATGCA 60 77745922 77748278 TTCTTGAACCAGACCTGGAC 60 NA Rattus norvegicus 81 Vcsa2 ENSRNOG00000001945 ENSRNOT00000002667 2 1 1 81 14 21559006 21612298 TAGTATGCTTCCCGTCAGG 59 21558943 21558964 AGAGTTGAAAGATCTTGTGGTC 58 NA Rattus norvegicus 81 Wdr90 ENSRNOG00000020006 ENSRNOT00000027121 3 1 1 80 10 15228015 15228033 TCAGACACTTCAGGATGGA 58 15227852 15227971 TCTTCAAGACCTTGTCCGT 59 NA Rattus norvegicus 81 Nob1 ENSRNOG00000021890 ENSRNOT00000034386 2 1 1 80 19 38405348 38406176 GCTGTTTCAAGACAACATCG 58 38406218 38406237 TCACAGACACTTTCTTCAGG 58 NA Rattus norvegicus 81 Cpsf4 ENSRNOG00000000985 ENSRNOT00000042474 2 1 1 80 12 11200807 11203682 CACTTGCTACAAGTGTGGT 58 11200745 11200763 CACTGTCCACTGAGAAAGG 58 NA Rattus norvegicus 81 Fbxw7 ENSRNOG00000010889 ENSRNOT00000076609 3 1 2 96 2 184309489 184309507 ATGAGGAGCAGATGAATCG 57 184309318 184309430 GAAGAGTCCTCATCATTCCG 58 NA Rattus norvegicus 81 LOC100362391 ENSRNOG00000048888 ENSRNOT00000073768 2 1 1 60 4 102426447 102426466 TGTTTGTGGTAGCTTTAGGG 58 102426487 102426507 TGCTTCTTACACTCATTCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 rnf141 ENSRNOG00000017900 ENSRNOT00000024561 1 1 1 80 1 175647004 175650546 GCTGAACTCAATGATGTAACTG 58 175646945 175646963 ATCAGACCCAGGTTGTACC 59 NA Rattus norvegicus 81 Cyb5a ENSRNOG00000015205 ENSRNOT00000020446 3 1 1 80 18 81724793 81726469 GTCTAATTCCAGTTGGTGGAC 59 81726508 81726529 ATGTAGAGGCGATACATCAGAG 59 NA Rattus norvegicus 81 Rn60_18_0532.1 ENSRNOG00000043100 ENSRNOT00000055675 3 1 1 60 18 53905410 53905429 CAGGTCATCTTTCCAGTCAG 58 53905450 53905470 CACCAACCTCTAGTACATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Meig1 ENSRNOG00000016283 ENSRNOT00000021918,ENSRNOT00000090779 3 2 2 120 17 78826767 78829140 CAAGTTGCCATGGTAGACC 59 78829224 78829242 CTTTGTGGACCTCCTTGTC 58 NA Rattus norvegicus 81 Fscn2 ENSRNOG00000036700 ENSRNOT00000054975 2 1 1 87 10 109534472 109538568 TGAGGCAAGGAATCAATGTC 58 109538618 109538636 TTCTTTGTCTCCTGGTCGA 58 NA Rattus norvegicus 81 Pcdhb9 ENSRNOG00000020072 ENSRNOT00000027188 3 1 1 60 18 30476250 30476270 CATCTTCAGAGTTGGAGACAG 58 30476292 30476310 TGAGATAGAGCAAACCGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563780 ENSRNOG00000050432 ENSRNOT00000066220 2 1 1 83 15 31867768 31867955 GATTTGCTGGGTGAGAGGA 59 31868001 31868020 CATCTCAGAGCAGGATTGGT 60 NA Rattus norvegicus 81 Pglyrp1 ENSRNOG00000013395 ENSRNOT00000018233 1 1 1 89 1 79791071 79791089 AGACTCCTGTGAACAGCAG 59 79791141 79794935 CCAATGAGGAAGTTGTAGGC 59 NA Rattus norvegicus 81 Grm5 ENSRNOG00000016429 ENSRNOT00000050639,ENSRNOT00000022060 3 2 2 81 1 151439677 151630856 TACTTCTGGGCAGTGATGG 59 151630900 151630919 ATTGTAATTCCACCGACAGC 59 NA Rattus norvegicus 81 Mical3 ENSRNOG00000053203 ENSRNOT00000082982 1 1 1 80 4 153552569 153552589 ACTACTGTTACCGACTGTCTG 59 153551648 153552527 GTCCTTTGGCTTCCTTTCC 59 NA Rattus norvegicus 81 Pbx3 ENSRNOG00000022162 ENSRNOT00000082036,ENSRNOT00000029600 1 2 2 80 3 13247870 13270129 CATCACAGTATCACAGGTATCC 58 13247811 13247829 TCCTCTTGAAATTTGCCGA 57 NA Rattus norvegicus 81 AABR07017841.1 ENSRNOG00000048670 ENSRNOT00000072744 1 1 1 62 15 31770000 31770018 CTTTCAGCTCCATTTGCCT 58 31770227 31770245 TTGAAGCCTGAGTTTGCAC 59 NA DesignNoJunction Rattus norvegicus 81 Ift27 ENSRNOG00000006440 ENSRNOT00000008450 3 1 1 80 7 119393635 119398563 CTTTGAGACATCTGTGAAGGAG 59 119393576 119393595 CGATACAGCTGGTAGAACTG 58 NA Rattus norvegicus 81 Pde7b ENSRNOG00000013436 ENSRNOT00000078586,ENSRNOT00000018556 1 2 2 80 1 15906114 15913138 TTGCCAAAGGAAATGACACAG 60 15906054 15906075 CTCATTCTGTCTGTTGATGTCC 59 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000059739,ENSRNOT00000050222,ENSRNOT00000051908,ENSRNOT00000078583,ENSRNOT00000091677,ENSRNOT00000082793,ENSRNOT00000083088 2 7 8 114 6 64852803 64852824 AACAAGGGTGGTAAATATCCAG 58 64854383 64861609 GATCTTCTGCATCACTATATTCTCC 59 NA Rattus norvegicus 81 Olr325 ENSRNOG00000021071 ENSRNOT00000028605 2 1 1 60 1 228546017 228546035 AACACTGTCATCACACCCA 59 228545975 228545995 TCATTTCTTGGTTCCTGAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhox2 ENSRNOG00000040013 ENSRNOT00000085170 3 1 3 83 X 123988491 123988512 AGGAATCACTATCTCAGTGCTG 60 123888234 123963879 AAACCATCTCTGCACTTTGG 59 NA Rattus norvegicus 81 Rrad ENSRNOG00000011901 ENSRNOT00000016259,ENSRNOT00000081547 3 2 2 86 19 563180 563298 ACATTTGGGAACAGGATGG 58 563345 563366 CCGTTATTGAGTACACAATGAC 58 NA Rattus norvegicus 81 Bclaf1 ENSRNOG00000058050 ENSRNOT00000088025,ENSRNOT00000089966,ENSRNOT00000079069,ENSRNOT00000083012 1 4 5 91 1 15845063 15845084 CTTGAAGATGAGCTGACTTCTC 59 15845136 15845988 CTGATGAAGCCAGTCTCCC 60 NA Rattus norvegicus 81 Shmt1 ENSRNOG00000005275 ENSRNOT00000007092 2 1 1 80 10 47036943 47037967 TATTCTACAGAAAGGGTGTGC 58 47036883 47036901 AGTTGATGAGGGACTCCAG 58 NA Rattus norvegicus 81 Mir6322 ENSRNOG00000047842 ENSRNOT00000072595 3 1 1 60 12 26825112 26825130 GGTCTGTACGCATCTTTCC 58 26825070 26825089 AAGACAGAGACCTGTGTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kalrn ENSRNOG00000001706 ENSRNOT00000049292,ENSRNOT00000016340 1 2 2 80 11 69834615 69837668 AGGAACAATAGTAAGAGGGATGG 60 69837706 69837726 AATGGATATGGTATCGGGCTG 60 NA Rattus norvegicus 81 Arrb1 ENSRNOG00000030404 ENSRNOT00000043554 2 1 1 80 1 164567021 164568261 GAGCTTGACACCAATGATGAC 60 164568302 164568321 GTCCTTGTCATCCTTCATGC 59 NA Rattus norvegicus 81 LOC682489 ENSRNOG00000037960 ENSRNOT00000057735 2 1 1 95 13 98728874 98772765 GGGATTGGGAACATTCGTC 59 98728797 98728815 ATATTCAGCCAGAAGACGC 58 NA Rattus norvegicus 81 LOC100909879 ENSRNOG00000032580 ENSRNOT00000048046 1 1 1 80 2 87418865 87419514 TTTGTGTATGCAGGAGCAG 58 87419557 87419576 TGATTCTCCAGCATCAACAG 58 NA Rattus norvegicus 81 Tsc22d4 ENSRNOG00000050805 ENSRNOT00000039280 3 1 1 85 12 22010033 22016823 TGATGACGACAGTGGTTCC 60 22009628 22009646 ACATGAGGTGGGACTTCAC 59 NA Rattus norvegicus 81 Rhbdl3 ENSRNOG00000005515 ENSRNOT00000007312 2 1 1 89 10 67711876 67723695 ATTGTCATGAACTGGTCAGG 58 67729116 67729134 TCTCCCGAACTCCATACTC 58 NA Rattus norvegicus 81 Pcdhga11 ENSRNOG00000027232 ENSRNOT00000026969 2 1 1 60 18 30905541 30905561 TGTCACCTCTTCCATCAACTC 60 30905581 30905601 AAGAGCAATTACTGTACCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1619 ENSRNOG00000048856 ENSRNOT00000046317 2 1 1 60 15 27347051 27347073 CTTCTTCTCCTTTGGTTCTACAG 59 27347091 27347111 GTAGCGATCAAATGCCATGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctrb1 ENSRNOG00000019068 ENSRNOT00000026017 2 1 1 81 19 43906984 43907907 AATACAATGCCCTCAAGACC 58 43906922 43906940 CAGGACTTCTTGCAGTCAG 58 NA Rattus norvegicus 81 Mllt4 ENSRNOG00000023753 ENSRNOT00000032667 2 1 1 80 1 53777436 53780278 ACTTACGAAGATGGCTCTG 57 53777374 53777392 CTCTGTCCCAACTTCAGTC 58 NA Rattus norvegicus 81 Cdk2ap1 ENSRNOG00000001070 ENSRNOT00000001419 2 1 1 89 12 37672703 37672721 CTACTAGCATGGCGACCTC 60 37672773 37674163 TATTTCCAGTTCCCTGGGTG 59 NA Rattus norvegicus 81 Wnt16 ENSRNOG00000005781 ENSRNOT00000007822 3 1 1 70 4 49372164 49372182 AAAGCAAAGTCCTGCTAGC 59 49372216 49378970 CATTAACTTGGCGACAGCC 60 NA DesignNoJunction Rattus norvegicus 81 Igf1 ENSRNOG00000004517 ENSRNOT00000081822,ENSRNOT00000038780,ENSRNOT00000005995,ENSRNOT00000085680 2 4 4 98 7 28417724 28468710 TTACTTCAACAAGCCCACAG 59 28468771 28468789 CTCCTCAGATCACAGCTCC 59 NA Rattus norvegicus 81 Igf1 ENSRNOG00000004517 ENSRNOT00000081822,ENSRNOT00000038780,ENSRNOT00000005995,ENSRNOT00000085680 3 4 4 99 7 28417723 28468710 TTTACTTCAACAAGCCCACAG 59 28468771 28468789 CTCCTCAGATCACAGCTCC 59 NA Rattus norvegicus 81 Olr634 ENSRNOG00000045745 ENSRNOT00000047382 1 1 1 60 3 76768250 76768270 TGGACATTTGCTATACCTCCT 59 76768291 76768310 CTTCTCACAAGCAGATCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr634 ENSRNOG00000045745 ENSRNOT00000047382 3 1 1 60 3 76768121 76768140 TTTGCTTCCTGTTCTTCTCC 58 76768161 76768181 AGGATCATCAGATTCCCAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbm12 ENSRNOG00000049913 ENSRNOT00000026700 1 1 1 60 3 152178410 152178431 CTACCTACTGGAATGAATGGCT 60 152178371 152178394 CAGGGTTCAGATTATTGTTCAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhb13 ENSRNOG00000020062 ENSRNOT00000027172 2 1 1 60 18 30517000 30517019 TTATCCTCACTCAACAGCCC 60 30517039 30517060 TGAATACTGCCACTATGATACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cenpe ENSRNOG00000009339 ENSRNOT00000034565 2 1 1 80 2 240447048 240447070 GAAGAAGTGATAAGGCTACTGAG 59 240447107 240450057 GTCTTGTTCTGAGAGCATTGAG 59 NA Rattus norvegicus 81 RGD1560730 ENSRNOG00000014266 ENSRNOT00000019103 2 1 1 116 1 104001077 104009817 GGAGGGAAGGAACACTAGTG 60 104000980 104001001 TGAAACTCGATGGAACAAAGTG 60 NA Rattus norvegicus 81 LOC100912217 ENSRNOG00000047847 ENSRNOT00000073864 1 1 1 81 1 173013086 173013105 CAAATCCAGGTACTCACCAG 58 173013147 173015460 AAGTGGATTATTCAGCAGAGG 58 NA Rattus norvegicus 81 LOC100912217 ENSRNOG00000047847 ENSRNOT00000073864 2 1 1 82 1 173013086 173013105 CAAATCCAGGTACTCACCAG 58 173013147 173015461 TAAGTGGATTATTCAGCAGAGG 58 NA Rattus norvegicus 81 LOC100911372 ENSRNOG00000007663 ENSRNOT00000010383 2 1 1 81 5 105212089 105212110 CTTCGTACGTTCTATGAGAAGC 59 105211686 105212047 GGACCACATAACCCTTCCA 59 NA Rattus norvegicus 81 Zfpm1 ENSRNOG00000043077 ENSRNOT00000068452 3 1 1 81 19 55118789 55121066 CCACCCAGAGAAGATGTGAG 60 55121110 55121128 CTTGTCCCTCCACATCCTC 60 NA Rattus norvegicus 81 Cant1 ENSRNOG00000003239 ENSRNOT00000066303 2 1 1 81 10 107436909 107436929 ATCTACCAGATCGAAGGTACC 59 107435008 107436866 CTTTGAAGCCCTTCTCCAC 59 NA Rattus norvegicus 81 RGD1310507 ENSRNOG00000009434 ENSRNOT00000052317,ENSRNOT00000083855 1 2 3 89 8 111773206 111773224 AAGAAAGTCCTTCCTGCAG 57 111770200 111773155 TTTATTGGCTGAGATATCCCG 58 NA Rattus norvegicus 81 Ctdspl2 ENSRNOG00000022141 ENSRNOT00000078978,ENSRNOT00000037168 3 2 2 81 3 113936773 113936793 AATAGGAAACCTGCTCTTCCT 59 113936836 113940606 GCACTAGCGTTTCATCCAG 59 NA Rattus norvegicus 81 Maml2 ENSRNOG00000005879 ENSRNOT00000087963 1 1 2 60 8 11997802 12160125 TAGTTAACCTTGGTCCCGC 59 12160149 12160167 AGAAATGAGCTGTCAGGGA 58 NA DesignNoJunction Rattus norvegicus 81 Olr639 ENSRNOG00000052168 ENSRNOT00000087552 1 1 1 60 3 76890991 76891011 TGGACATTTGCTATACCTCCT 59 76891032 76891051 CTTCTCACAAGCAGATCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apol2 ENSRNOG00000048451 ENSRNOT00000074293 3 1 1 94 7 118729484 118732293 TGAGTTGTCCAGAGCTGAC 59 118729408 118729426 CATGTTGGAGCCTGTTCTG 59 NA Rattus norvegicus 81 LOC100363112 ENSRNOG00000033429 ENSRNOT00000046977 2 1 1 81 3 119354955 119354973 AACTCAATCTGCTCACCGA 59 119355015 119376028 GTGAAGTTCCATTTCCTACACC 59 NA Rattus norvegicus 81 Pld6 ENSRNOG00000021657 ENSRNOT00000033483 1 1 1 81 10 46143236 46145127 GCAAGGCAGGTATACAGGT 60 46143173 46143191 AGCACCTTCTTGTCAACGA 60 NA Rattus norvegicus 81 Pld6 ENSRNOG00000021657 ENSRNOT00000033483 3 1 1 87 10 46143236 46145127 GCAAGGCAGGTATACAGGT 60 46143167 46143186 GTGATGAGCACCTTCTTGTC 59 NA Rattus norvegicus 81 LOC494224 ENSRNOG00000030258 ENSRNOT00000046005 3 1 1 63 14 21819576 21820860 TGCCAGTGATGAGTTACCT 58 21819531 21819549 GTATCCACCAAATGGAGGC 58 NA DesignNoJunction Rattus norvegicus 81 Ntf3 ENSRNOG00000019716 ENSRNOT00000087115 1 1 3 90 4 158637986 158703960 CTGCCACGATCTTACAGGT 60 158637914 158637932 ATGTTGTTGCCTTGGATGC 59 NA Rattus norvegicus 81 Rara ENSRNOG00000009972 ENSRNOT00000084644,ENSRNOT00000008659 1 2 2 80 10 86880072 86880232 TACACTACGAACAACAGCTC 58 86880275 86880293 CTTGGTGGAGAGTTCACTG 58 NA Rattus norvegicus 81 Rhbdl1 ENSRNOG00000019921 ENSRNOT00000026971 3 1 1 80 10 15203078 15203097 CTGGTACTTCTACAGGCACC 60 15202942 15203035 AGGAACACGATGATCTGGG 59 NA Rattus norvegicus 81 Mettl13 ENSRNOG00000003042 ENSRNOT00000075969,ENSRNOT00000063902 1 2 4 85 13 80429848 80429866 GGGAATGAGTTGTCCTCCC 60 80428615 80429803 TAAAGATACCTTCACGAGACAGG 60 NA Rattus norvegicus 81 Muc5b ENSRNOG00000019846 ENSRNOT00000028967 1 1 1 80 1 214809038 214809057 GTGCTGAGAATGGAGTTCAC 59 214809099 214809260 TCCTTAGGATTCCCGTACAG 58 NA Rattus norvegicus 81 Aamp ENSRNOG00000014399 ENSRNOT00000085901 1 1 3 96 9 81562790 81563016 TCCTCCCTGATGGAAAGAG 58 81562712 81562731 CCTTTCAGTACATGGATGGG 58 NA Rattus norvegicus 81 Psors1c2 ENSRNOG00000048579 ENSRNOT00000074958 2 1 1 139 20 3728160 3728762 TATTTGCAGGAGGCATCTC 57 3728039 3728058 CTCATCAAACAGAGGAGGTG 58 NA Rattus norvegicus 81 Ube3b ENSRNOG00000047219 ENSRNOT00000074000,ENSRNOT00000080049 2 2 2 80 12 47957905 47958014 CTCAACCTGTTCAAGACAACC 60 47957845 47957864 CTGCAGGTAGTTCTCATGGA 59 NA Rattus norvegicus 81 Cenpt ENSRNOG00000024178 ENSRNOT00000036702 2 1 1 80 19 37817985 37819619 GAGCACTCAGACGAATCCA 60 37817923 37817942 GTACTCGTCTTTCTCTGGCT 59 NA Rattus norvegicus 81 Tsc22d4 ENSRNOG00000046006 ENSRNOT00000059593 1 1 1 80 12 22005807 22005829 CCGTAGTCAATTCAGTTTCTACG 60 22001038 22005771 TCATAGAAGACTTCCACCTACAC 59 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000060250 1 1 10 80 15 32832039 32832060 TTGATAGAGGTTCAGCTCTAGG 59 32832101 32852790 CTGGGTCTGTGACATCAGG 60 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000073853 1 1 10 80 15 32817412 32852782 TCTGTCAAGCCAAATGTCAC 59 32852824 32852843 GCAGAGGGTGATGTTATCAG 58 NA Rattus norvegicus 81 Prima1 ENSRNOG00000008915 ENSRNOT00000011906 1 1 1 82 6 127078926 127083806 CCATAAAGAGGAAACCACTGAG 59 127078865 127078883 TTTGTTACTCGGCGAGGAG 60 NA Rattus norvegicus 81 Ddx23 ENSRNOG00000060154 ENSRNOT00000089612 2 1 1 80 7 140331176 140331197 GAGAACAGTCACGTTTCTATGG 59 140331021 140331135 GGAGTCTTGCTTCCTCCTG 60 NA Rattus norvegicus 81 Acan ENSRNOG00000028992 ENSRNOT00000047848,ENSRNOT00000049681 3 2 2 80 1 140799926 140800993 CTGCTACACAGGTGAAGAC 58 140801037 140801055 GTCTGGATGGTGATGTCCT 59 NA Rattus norvegicus 81 Bcl6 ENSRNOG00000001843 ENSRNOT00000002522 3 1 1 92 11 80275638 80275656 TGTGAAATCTGTGGTACCC 57 80275712 80277866 CTTCTCACAATGGTACGGT 57 NA Rattus norvegicus 81 Tesl ENSRNOG00000033628 ENSRNOT00000044165 1 1 1 90 X 121054599 121066743 CTGAAAGCAGATGGACTTAGG 59 121054529 121054548 AAAGTGTAGCTCAAACCCTG 58 NA InUTR Rattus norvegicus 81 LOC100362356 ENSRNOG00000030188 ENSRNOT00000040783 3 1 1 81 8 37126234 37126254 GGAAGTTTGACATATTGCCAG 58 37125907 37126192 AGGTTTAACCCTGTGTAACG 58 NA Rattus norvegicus 81 Fam212a ENSRNOG00000019363 ENSRNOT00000026216 1 1 1 161 8 116764640 116764658 TGACAGTTTCCTGAGCCAG 60 116763868 116763886 CAGACAGAGTCCTCTTCCA 58 NA DesignNoJunction Rattus norvegicus 81 Fam212a ENSRNOG00000019363 ENSRNOT00000026216 2 1 1 162 8 116764641 116764659 TTGACAGTTTCCTGAGCCA 59 116763868 116763886 CAGACAGAGTCCTCTTCCA 58 NA DesignNoJunction Rattus norvegicus 81 Trip4 ENSRNOG00000016121 ENSRNOT00000085745,ENSRNOT00000021863 1 2 2 80 8 71490064 71492291 GTATCACAGCAGACTAGATGAG 58 71490005 71490024 GATCTATCAGACGTGACCAG 57 NA Rattus norvegicus 81 Trip4 ENSRNOG00000016121 ENSRNOT00000085745,ENSRNOT00000021863 2 2 2 80 8 71495856 71495875 TCGAATGAAGTCTGGTTTGG 58 71492484 71495814 GTCCTTCGGATACTAGTCCT 58 NA Rattus norvegicus 81 Ccdc94 ENSRNOG00000047456 ENSRNOT00000072357 1 1 1 80 9 11105850 11107188 CCATTCAACATGAGGTGTAAGAC 60 11105792 11105811 CTGGACTGTTTCCTTTCGTG 59 NA Rattus norvegicus 81 Sgsh ENSRNOG00000049552 ENSRNOT00000070934 3 1 1 80 10 108471344 108473029 TGGATCAAGGGATAGGATTGG 59 108471284 108471303 CGGATGTGAAGATGATGAGG 58 NA Rattus norvegicus 81 Rpl31l4 ENSRNOG00000039249 ENSRNOT00000045401 1 1 1 60 12 19159542 19159560 ACTTACGTGCCTGTTACCA 59 19159500 19159521 GTTAGTTCTCATCCACATTGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500877 ENSRNOG00000029292 ENSRNOT00000043257 2 1 1 80 7 101134610 101134629 GGAGTCTACAATGGGAAGGT 59 101123634 101134568 ACTTGCAAATATCCTGAGGC 58 NA Rattus norvegicus 81 Tekt3 ENSRNOG00000027212 ENSRNOT00000038276 1 1 1 80 10 49496088 49499028 TCACTTATCGAAGACCCTGC 60 49499071 49499089 GACTTCTCCTTGATGGCCT 59 NA Rattus norvegicus 81 Gad2 ENSRNOG00000018200 ENSRNOT00000024901 3 1 1 80 17 89185357 89197826 ATTCACGTCAGAGCATAGTC 58 89197869 89197887 ATCAGAATCACGCTGTCTG 58 NA Rattus norvegicus 81 Atxn3 ENSRNOG00000005470 ENSRNOT00000007505 1 1 1 80 6 125824586 125824606 CCTGGATACCTTTCATACCCA 59 125821617 125824544 CATAGCATTGCCTGCTTGG 60 NA Rattus norvegicus 81 Cadps2 ENSRNOG00000007636 ENSRNOT00000068404 3 1 1 80 4 50578070 50578090 TCAAAGTGAAGCTCTTCACAG 59 50555430 50578028 TTGGGTATAACACCACCCT 58 NA Rattus norvegicus 81 Synpo ENSRNOG00000019181 ENSRNOT00000025934,ENSRNOT00000064686 1 2 2 60 18 55871901 55871919 GAGACTTTGTCAACAGCCC 59 55871859 55871881 GAGTAGAATAAGAGGGAGGAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055660.1 ENSRNOG00000048637 ENSRNOT00000045619 2 1 1 88 7 7534402 7534423 GGACTCTCACTTAAAGACTCCT 59 7534329 7534351 CAAATCTGGGAATGGAAACAC 58 NA DesignNoJunction Rattus norvegicus 81 AABR07006049.2 ENSRNOG00000048049 ENSRNOT00000054858 2 1 1 80 1 215303281 215305730 GAATGAGACAAGAGATGTGCT 58 215303221 215303239 GCAAACTCTTTAAGGCCGA 59 NA Rattus norvegicus 81 Mllt3 ENSRNOG00000011280 ENSRNOT00000015094 1 1 1 80 5 106109689 106111001 GTGAATGTGACAAGGCTTACC 60 106109629 106109648 GCAGAATGTGTCTTTCCCTC 59 NA Rattus norvegicus 81 Dnajc6 ENSRNOG00000052887 ENSRNOT00000086259,ENSRNOT00000086539 1 2 2 80 5 120430721 120430741 CTGAAGGACAACTTGAAAGAC 57 120430783 120431929 GTCTCCCTTTGTGTAGCTG 58 NA Rattus norvegicus 81 Ces2j ENSRNOG00000029744 ENSRNOT00000061734 1 1 1 80 19 492544 492630 GTGCATAGTATCATTGATCTTCGG 60 492723 492744 ATGATATGATAAAGGCCCAGGA 59 NA Rattus norvegicus 81 Elmod3 ENSRNOG00000038102 ENSRNOT00000086725,ENSRNOT00000057989 1 2 2 80 4 100434991 100437387 CTTCCAGGGAGCAAATCCA 60 100434929 100434947 TCCATGACCAGGTACAGGA 60 NA Rattus norvegicus 81 Duox2 ENSRNOG00000017395 ENSRNOT00000023939 3 1 1 80 3 114234633 114235126 GCTCTTCTTTGGCTATCACG 59 114234572 114234592 TAAATGTTGAGGAACTCTGCG 59 NA Rattus norvegicus 81 Hs3st3a1 ENSRNOG00000024591 ENSRNOT00000033737 3 1 1 60 10 50928374 50928393 CAGGAAGTTCTTGCTGATGC 60 50928414 50928434 CAGGCAGTAGAAGACGTAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cby1 ENSRNOG00000013892 ENSRNOT00000018787 3 1 1 80 7 120896381 120896402 TATGGAACTCCTACCATGAACC 59 120896441 120896539 ACTAATCACTGAGTCTGCCAC 60 NA Rattus norvegicus 81 Klhl33 ENSRNOG00000025868 ENSRNOT00000032992 2 1 1 81 15 27814282 27814389 AACTCTCAGGTGGAGTTCC 59 27814219 27814237 CACCAAAGGGAAGAAGCTC 59 NA Rattus norvegicus 81 Olr621 ENSRNOG00000047515 ENSRNOT00000044856 2 1 1 60 3 77309511 77309530 TATGACGCAGATCTTTGCAG 59 77309550 77309571 GAGAATAAGCACAAAGATCTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361584 ENSRNOG00000023561 ENSRNOT00000084240,ENSRNOT00000078495,ENSRNOT00000032112 3 3 3 80 4 158420159 158420180 GAGAAACTGCTAAAGGAGAGTG 59 158420219 158497416 TTCATCATCCTCATCGTCCTC 60 NA Rattus norvegicus 81 Ctsd ENSRNOG00000020206 ENSRNOT00000027407 3 1 1 80 1 215551032 215551052 AGTACTCCATGCAGTCATCTC 59 215549093 215550991 CATAGTACTGGGCATCCAGG 60 NA Rattus norvegicus 81 Cox7b ENSRNOG00000054689 ENSRNOT00000090007 1 1 1 80 X 77065515 77069156 AAGTCGTCTCCAAGTTCGA 59 77069198 77069218 TTGTCATGGAAAGTAGGTGTC 58 NA Rattus norvegicus 81 Rpusd4 ENSRNOG00000011567 ENSRNOT00000015670 2 1 1 104 8 36474697 36474715 ACATCAGCTCCGAGTTCAC 60 36474782 36476304 CCAGCAGAAAGTTTCTGAGG 59 NA Rattus norvegicus 81 Npr1 ENSRNOG00000014684 ENSRNOT00000020307 2 1 1 80 2 189848105 189848127 TAGAGAATGAGAGTATCACCCTG 59 189847950 189848068 GTAGAAAGAGCATTCCCTTGAC 59 NA Rattus norvegicus 81 LOC680097 ENSRNOG00000050933 ENSRNOT00000072286 3 1 1 61 17 43821380 43821399 CATCTCCGGTCTCATCTACG 60 43821338 43821356 TCACGTTCTCCAGGAACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069386.1 ENSRNOG00000046689 ENSRNOT00000075473 3 1 1 80 8 20565883 20565904 CATTCTCTGGACTGTTCCTG 58 20565947 20565965 AATTAGAGCTGACAGCCAG 57 NA Rattus norvegicus 81 Tcea3 ENSRNOG00000011794 ENSRNOT00000015776 1 1 1 80 5 154630042 154633457 TTGTACCTATAACCAGGTGC 57 154633500 154633518 CGATTCCCACATTCATTGC 58 NA Rattus norvegicus 81 Zfp316 ENSRNOG00000001094 ENSRNOT00000052327 1 1 1 98 12 13354975 13354993 CTTTGGAGGAGTGGGAGAG 59 13355054 13355499 TTGGGTATCCCAAGGAAACC 60 NA Rattus norvegicus 81 Amtn ENSRNOG00000003776 ENSRNOT00000065778 3 1 1 81 14 21294233 21295804 GACCTGCCATTGTTCAACC 60 21294170 21294188 GTTGTCCATTCAGTGGTCC 59 NA Rattus norvegicus 81 RGD1559909 ENSRNOG00000042421 ENSRNOT00000065105 1 1 1 60 5 142844427 142844445 TCTGTATCCACCAGAGGTG 58 142844385 142844403 ATCAAGACTCTGCAGCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1559909 ENSRNOG00000042421 ENSRNOT00000065105 2 1 1 61 5 142844427 142844446 ATCTGTATCCACCAGAGGTG 59 142844385 142844403 ATCAAGACTCTGCAGCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cebpe ENSRNOG00000014282 ENSRNOT00000019155 1 1 1 247 15 33357142 33357160 GTGAAAGAGGAGCCTCGAG 60 33356360 33356378 TTGTTCACTGCCTTCTTGC 59 NA DesignNoJunction Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000078543 1 1 8 130 3 100787465 100787486 CACTCTGTGTAGTTTCATTGTG 58 100815603 100815624 GCAACCGAAGTATGAAATAACC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000078543 3 1 8 160 3 100787465 100787486 CACTCTGTGTAGTTTCATTGTG 58 100815636 100815654 GTTTGCTTCTTTCATGGGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000080190 3 1 8 135 3 100787162 100787183 CTGCCTTGATGTTTACTTTGAC 58 100815636 100815654 GTTTGCTTCTTTCATGGGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Chst7 ENSRNOG00000004258 ENSRNOT00000005630 3 1 1 87 X 2655607 2655625 GAGACACCACTGGAAACCA 60 2623711 2655559 TAACCACTGACCTAGATATGCC 59 NA InUTR Rattus norvegicus 81 Sdc1 ENSRNOG00000059947 ENSRNOT00000086633 1 1 1 80 6 33905138 33905158 CTGTCATCAAAGAGGTTGTGG 59 33905198 33905677 AGGTGAAGTCTTGTTCTCCAG 60 NA Rattus norvegicus 81 Ccdc181 ENSRNOG00000002860 ENSRNOT00000003844 3 1 1 80 13 82587151 82587169 AGCTGAGAAAGCAAGAGGA 59 82587211 82588313 TTCTGAGCCATTGTCTAAAGG 58 NA Rattus norvegicus 81 Amz1 ENSRNOG00000024264 ENSRNOT00000039726,ENSRNOT00000090318 3 2 2 80 12 15980290 15980308 GGACCTCTGTCCTATCTGC 59 15977434 15980247 GTGTGCAGTCTCTTGTACCT 60 NA Rattus norvegicus 81 Pcdhb17 ENSRNOG00000039471 ENSRNOT00000040998 1 1 1 60 18 30564480 30564499 TCTTAAAGCCAGTTCTGCCT 59 30564519 30564540 TTTCCCTCTATTTCTTTCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp182 ENSRNOG00000047132 ENSRNOT00000073016 1 1 1 84 X 985273 985293 TCTCATTATCAAGCTGGAGGT 59 985339 998022 AACTTGGCAGACTTCTGGA 59 NA Rattus norvegicus 81 Rsu1 ENSRNOG00000017595 ENSRNOT00000057827 3 1 1 80 17 80529475 80576908 TGGACAGTTGGAATTCACG 58 80529413 80529431 ACCTCAAGGTTCTTCAGCT 59 NA Rattus norvegicus 81 Olr693 ENSRNOG00000006408 ENSRNOT00000008384 1 1 1 60 3 78105497 78105516 GTGCTACCATTGTTGAACCA 59 78105456 78105476 ACTTCTGCATTCCTCAAACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rock1 ENSRNOG00000031092 ENSRNOT00000061777,ENSRNOT00000051362 2 2 2 80 18 1307686 1307705 ACTTACGGAAAGCAAGTCAG 58 1307537 1307645 CATTCGCTTCTTCTAACTGCT 59 NA Rattus norvegicus 81 Zbtb8a ENSRNOG00000008300 ENSRNOT00000010983 2 1 1 80 5 147565809 147565829 CTGAAGTGGATCCTGTTTCTG 59 147564221 147565767 GCAGATTGTCTGGAAAGCT 58 NA Rattus norvegicus 81 Cyhr1 ENSRNOG00000014811 ENSRNOT00000088696,ENSRNOT00000077172 2 2 4 112 7 117712144 117719216 GTGTACCAGTGTACTAATGGTC 58 117712053 117712071 ATCTCACAACGACAGTTGG 58 NA Rattus norvegicus 81 Mir107 ENSRNOG00000035639 ENSRNOT00000053762 1 1 1 60 1 253128303 253128324 TAAGCTTCTTTACAGTGTTGCC 59 253128264 253128283 GATAGCCCTGTACAATGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddx49 ENSRNOG00000022368 ENSRNOT00000004891 2 1 1 80 16 20878603 20879370 ATGATGAAGCAGAAAGAGCG 59 20879409 20879431 CACGTCAGTAGCAATAAGAATCC 60 NA Rattus norvegicus 81 Sun1 ENSRNOG00000001299 ENSRNOT00000089418,ENSRNOT00000047287 2 2 2 80 12 17513532 17513550 CCAGACTGTTGACACTCAC 58 17512017 17513490 CTTCTCTGTTTGACTGTCCTG 59 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000089667,ENSRNOT00000080158,ENSRNOT00000079253,ENSRNOT00000091735,ENSRNOT00000082345,ENSRNOT00000079738,ENSRNOT00000080419 1 7 12 92 20 3352065 3352083 CTAAAGGACACCTCAGCCC 60 3352250 3352392 ACGGTCATCCAGTACAAAGAG 60 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000090225 3 1 12 60 20 3364215 3364235 TAACACATGCTTCATCTCCCT 59 3364255 3364275 CTGTAACAAGACCTGATCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049405.1 ENSRNOG00000037974 ENSRNOT00000057772 1 1 1 80 5 120869829 120869847 TATCTCATCGGCACACTCC 59 120869888 120869910 GGTTTGGAATGCCAGATATCAC 60 NA Rattus norvegicus 81 Kcne4 ENSRNOG00000048478 ENSRNOT00000072242 1 1 1 117 9 84689186 84689764 ACTGTCAGCCTTTGATCCC 60 84689845 84689863 AGACACATGGGACTCAAGG 59 NA InUTR Rattus norvegicus 81 Cxcl17 ENSRNOG00000037814 ENSRNOT00000057433 3 1 1 85 1 82269992 82270778 ACTGCAAAGATTGGTCCCT 59 82269925 82269943 ATGATCACAGGGACACTGC 60 NA Rattus norvegicus 81 Zfp503 ENSRNOG00000014237 ENSRNOT00000019644 3 1 1 98 15 2375290 2375309 TACACCCAGAGTATCTGCAG 59 2376058 2376076 AACATGTTTGAGCCAGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Atp5f1 ENSRNOG00000046299 ENSRNOT00000075932 2 1 4 99 2 208577000 208577018 CTTCGCAGACAATGCTGTC 60 208576669 208576687 GGTGACACTTACCCTGGAC 60 NA DesignNoJunction Rattus norvegicus 81 Xrn2 ENSRNOG00000011785 ENSRNOT00000016351 1 1 1 80 3 141245323 141245345 GATGAACTTGCAGATAGTCTTCC 59 141245383 141245485 TTCCAGATACTCTCGAAGGAC 59 NA Rattus norvegicus 81 Actg1 ENSRNOG00000036701 ENSRNOT00000054976 3 1 1 98 10 109519264 109519393 GAAGATTAAGATCATTGCTCCTCC 60 109519189 109519207 CTGATCCACATCTGCTGGA 59 NA Rattus norvegicus 81 Asic5 ENSRNOG00000011842 ENSRNOT00000016039 3 1 1 80 2 180949364 180950268 CAACTGAAGACCATCCACC 58 180950311 180950330 GCTGTAGGTGGTAAAGTTCC 58 NA Rattus norvegicus 81 Scamp4 ENSRNOG00000018271 ENSRNOT00000024980 3 1 1 112 7 11972753 11972771 CCATTGGGTTCTTTGGGAC 59 11970850 11972680 CCTGTGTACCTTCACAATAGTG 59 NA Rattus norvegicus 81 LOC100909476 ENSRNOG00000009166 ENSRNOT00000012256 1 1 1 81 6 127302676 127304074 GAAGAAGAGATGTACAAAGGAGG 59 127302617 127302638 CCTGCTTCAGAATCTTCATCTG 59 NA Rattus norvegicus 81 Prkaa2 ENSRNOG00000007706 ENSRNOT00000010680 2 1 1 80 5 124591777 124593406 AGATAGCTGACTTCGGACTC 59 124591716 124591735 CTGCATAATTTGGCGATCCA 59 NA Rattus norvegicus 81 Ube2q1 ENSRNOG00000020791 ENSRNOT00000028210 3 1 1 80 2 189112915 189113124 AAACTCCTCAAAGTTGACCA 57 189113167 189113185 GATGAAGTCTGCTCCTTCC 58 NA Rattus norvegicus 81 AABR07065353.1 ENSRNOG00000037891 ENSRNOT00000057577 2 1 1 80 6 123362004 123362022 CTAGAGCCTCACACTTGTG 58 123362066 123376546 AATAATCTTGGTGCTGGGC 58 NA Rattus norvegicus 81 AABR07017868.2 ENSRNOG00000050388 ENSRNOT00000073686 3 1 1 80 15 31989080 31989284 ATTTGTCTTGCAACCAGCA 59 31989328 31989346 TGTCACAGTCTTCGTCTCC 59 NA Rattus norvegicus 81 Eno1 ENSRNOG00000017895 ENSRNOT00000081579,ENSRNOT00000024106 2 2 2 80 5 167297622 167298212 TCAAGGACTACCCAGTGGT 60 167298255 167298274 CAGTAGCTGTGAACTTCTGC 59 NA Rattus norvegicus 81 Vim ENSRNOG00000018087 ENSRNOT00000024430 1 1 1 80 17 80890021 80890040 TCACTTCCTCTGGTTGACAC 60 80890082 80890852 ATTGATCACCTGTCCGTCTC 60 NA Rattus norvegicus 81 Olr305 ENSRNOG00000052972 ENSRNOT00000089511 2 1 1 60 1 213169687 213169707 CATGGACATTATCTGCACCTC 59 213169728 213169747 CTCAGACAGTAGACCAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r96 ENSRNOG00000058628 ENSRNOT00000080669 3 1 1 60 4 121871005 121871023 GCCTGTCTACTGCATATCC 58 121871044 121871065 TTGTTAAACAGGAGCTTCTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1640 ENSRNOG00000048857 ENSRNOT00000047436 2 1 1 60 15 28806180 28806198 TCTGAAACTAGCCTGTGCC 60 28806138 28806156 TCCGATGTCCACAAAGGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr35 ENSRNOG00000028783 ENSRNOT00000051970 3 1 1 80 6 34143866 34145562 AGTTACTTCCAGAAATAGCCCA 59 34145603 34145621 GGTTACACTTCAGGAACGC 59 NA Rattus norvegicus 81 Ipo7 ENSRNOG00000010427 ENSRNOT00000014002 1 1 1 80 1 174693474 174694148 GAAGAGCAGCACATGAATCC 59 174694190 174694209 TGAAAGAACTTGGCACAACC 59 NA Rattus norvegicus 81 LOC100912042 ENSRNOG00000047187 ENSRNOT00000075095 1 1 1 80 3 4875566 4876039 TAAACTCAGGAAGAAGGAGC 57 4876081 4876100 AAGGAACTGAAGTTCTTGGG 58 NA Rattus norvegicus 81 Tecrl ENSRNOG00000001912 ENSRNOT00000002621 2 1 1 80 14 26677040 26697185 AAGTTTCACAAAGCATGTCC 57 26700296 26700314 ATCCTTCAAGTACGGACCA 58 NA Rattus norvegicus 81 AABR07017830.1 ENSRNOG00000046356 ENSRNOT00000071642 3 1 1 105 15 31579511 31579647 CTCCTCATCCTCACAAGGG 59 31579716 31579734 CGGCTGAATAGTTGCAGTG 59 NA Rattus norvegicus 81 Neu2 ENSRNOG00000016962 ENSRNOT00000080930,ENSRNOT00000022818 1 2 2 84 9 94722221 94723633 CATGTCAAGTGGCAACCTG 60 94723680 94723699 TGTCATACAAGGGACATGGA 59 NA Rattus norvegicus 81 Nr1d1 ENSRNOG00000009329 ENSRNOT00000012537,ENSRNOT00000055333 1 2 2 80 10 86685831 86686144 AATGTTCTGCTGGCATGTC 59 86685769 86685788 GAAGTCTTCCCAGATCTCCT 58 NA Rattus norvegicus 81 Ac1576 ENSRNOG00000058372 ENSRNOT00000078646 2 1 1 85 10 71343970 71344838 AAAGAAACTAATGAGGCGCG 59 71343904 71343922 TCATCACACTGAAGGGTCC 59 NA Rattus norvegicus 81 Olr515 ENSRNOG00000032722 ENSRNOT00000050404 2 1 1 60 3 73988963 73988986 GGTGTTGACAAGATTCCATTAGAG 60 73989002 73989023 AGCCCAAGAGTATAAACATCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrgprb5 ENSRNOG00000022703 ENSRNOT00000029958 2 1 1 60 1 103545685 103545706 CAATCCCATCATTTACTTCCTC 57 103545727 103545745 ACTCTGCCTTTGTAACCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gigyf2 ENSRNOG00000023577 ENSRNOT00000076099 1 1 3 80 9 94513060 94513078 GAGTGTCAGTTCCACTGGT 59 94513122 94518050 TAAAGGGACCTTGGACCTC 58 NA Rattus norvegicus 81 RGD1563782 ENSRNOG00000042711 ENSRNOT00000063878 2 1 1 82 11 86918848 86918951 ATTACTGAGGTGTGGGACG 59 86918784 86918802 CTTTGACGACCTACCAGGA 59 NA Rattus norvegicus 81 Vom1r82 ENSRNOG00000060630 ENSRNOT00000073173 2 1 1 60 4 88120503 88120521 TGAAGAAAGAGCCACCCAG 60 88120540 88120563 CCAGTACATGACTACAAAGAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pja2 ENSRNOG00000015528 ENSRNOT00000080962,ENSRNOT00000021258 3 2 2 82 9 112008386 112008404 GCTTTCATGTTGGATGGGA 58 112005780 112008340 TCAAATAGGCTCCAGTCCA 58 NA Rattus norvegicus 81 LOC100910122 ENSRNOG00000047933 ENSRNOT00000037303,ENSRNOT00000091242 3 2 2 80 10 37047126 37047145 GGTGTGGATCTGATCAAGGA 59 37047188 37048074 TTCCTTTAGCCTGGAGACC 59 NA Rattus norvegicus 81 Ms4a7 ENSRNOG00000020953 ENSRNOT00000028443,ENSRNOT00000091506 1 2 2 80 1 227498801 227503798 ACAGTTCTTGGGACTATCCAG 59 227498741 227498759 GGAGTAGGAAGCTGACACC 60 NA Rattus norvegicus 81 Homer2 ENSRNOG00000061450 ENSRNOT00000087785 2 1 1 80 1 143475752 143475772 CACTGTTTCCTACTTCTACGA 57 143463604 143475713 CTGTTTATGATTACCTTGGCTC 57 NA Rattus norvegicus 81 Ten1 ENSRNOG00000060307 ENSRNOT00000083022,ENSRNOT00000087084 1 2 3 96 10 105094844 105094862 TCTGGACTGTCCAGAAAGC 59 105094929 105094949 AGACTGGCCTTAAACTCCG 59 NA InUTR Rattus norvegicus 81 Poldip3 ENSRNOG00000022877 ENSRNOT00000055988,ENSRNOT00000082524 2 2 2 81 7 124001705 124001723 ATGACATTGTAGCACCCGT 59 124000080 124001660 CTCATTCCAGTCGTGTGGT 60 NA Rattus norvegicus 81 LOC100912370 ENSRNOG00000049711 ENSRNOT00000071385 3 1 1 60 3 77825713 77825731 GACCCACTTCTGCATTCTC 58 77825671 77825692 GGTGTAACAGCATTCATAAACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sephs2 ENSRNOG00000048397 ENSRNOT00000074114 3 1 1 134 1 198721090 198721108 GGAGTTTCTCCAACTACCG 58 198720971 198720989 GTCCCTCCAGGAGTTTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Bahd1 ENSRNOG00000010428 ENSRNOT00000013878 3 1 1 80 3 110727888 110727906 CAGGTCCAAGAAAGACGTC 58 110727948 110728386 TCATCAGTTCTCCTGACTCAG 59 NA Rattus norvegicus 81 AABR07042361.1 ENSRNOG00000052690 ENSRNOT00000072808 1 1 1 60 X 153678194 153678215 CTTCACCAACAGAATACAAGAG 57 153678233 153678254 TTCTATGGAATCTTCTGCTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phka1 ENSRNOG00000003063 ENSRNOT00000076850,ENSRNOT00000075929 1 2 3 80 X 72513543 72514993 TCCTGTGCCATCAGAATCC 60 72513481 72513500 ACACATTATCTCGGACCCAG 59 NA Rattus norvegicus 81 Lrtomt ENSRNOG00000023434 ENSRNOT00000039564 1 1 1 80 1 166987834 166987854 ATCCTCACAACTCTAGACCAC 59 166987081 166987798 CATCAGAATCTGACCTTTAATAGGG 59 NA Rattus norvegicus 81 Hm13 ENSRNOG00000007738 ENSRNOT00000087075,ENSRNOT00000010251 2 2 2 80 3 148169774 148169794 GAGTTTGACACTAAGGACCTG 58 148169833 148169945 AATCCAATGCTTCCTTAGAAGG 59 NA Rattus norvegicus 81 Pih1d1 ENSRNOG00000020634 ENSRNOT00000028022 1 1 1 80 1 101155228 101155334 ACCTGAGGATGCAGAACAG 59 101155377 101155396 GGCCATACTTGTCTTCAAGG 59 NA Rattus norvegicus 81 Tigd2 ENSRNOG00000038449 ENSRNOT00000058581 3 1 1 60 4 89538130 89538149 AACAGGATGACATGCTACTC 57 89538170 89538190 CTTATAATGGTCCGAAGCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0880.2 ENSRNOG00000051363 ENSRNOT00000076743 1 1 1 60 13 83034251 83034269 AGGCTTCACAGCCTATGAG 59 83034209 83034229 CTTGTCCTTGGACACTTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zbtb7a ENSRNOG00000020161 ENSRNOT00000027323,ENSRNOT00000082126 1 2 2 118 7 11436250 11436268 TGCGAGAAGGTGATTCAGG 60 11433455 11436168 TTCAGCTTGTCCTGTCTGG 60 NA Rattus norvegicus 81 Zbtb7a ENSRNOG00000020161 ENSRNOT00000027323,ENSRNOT00000082126 2 2 2 120 7 11436251 11436269 TTGCGAGAAGGTGATTCAG 58 11433454 11436167 CTTCAGCTTGTCCTGTCTG 58 NA Rattus norvegicus 81 AABR07005416.2 ENSRNOG00000048649 ENSRNOT00000072650 2 1 1 60 1 182843038 182843058 CTACGAGAAAGATCCAGTCCT 59 182843075 182843098 GTTACCTTCTGTGTAATCATCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560831 ENSRNOG00000007605 ENSRNOT00000009988 3 1 1 60 3 52998308 52998326 CTCTTAGGAGGGCTTGCAG 60 52998266 52998287 TTTCCATAATGAACCGAAGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Derl1 ENSRNOG00000005551 ENSRNOT00000007484 2 1 1 80 7 97746002 97746483 CCATGGATATGCAGTTGCT 58 97745940 97745959 CAATCAGGTCTCTGTTCAGC 59 NA Rattus norvegicus 81 Dynlt3 ENSRNOG00000003611 ENSRNOT00000004808 2 1 1 91 X 14635107 14635452 TACAACATCTGATGGCACC 58 14635034 14635055 GTTATAGGACAATTGCTACTGC 57 NA Rattus norvegicus 81 Cse1l ENSRNOG00000007665 ENSRNOT00000010210 3 1 1 80 3 163695040 163695060 GCTGTTGTGAACTTTGAGGAG 60 163695100 163695243 GTATGGGATGAACTCTTGCAC 59 NA Rattus norvegicus 81 Selp ENSRNOG00000002794 ENSRNOT00000003759 1 1 1 80 13 82456371 82456389 CCTGGGATCTCGAAATGTG 58 82456431 82457542 AGTGATGTTACACCTTTGCAG 59 NA Rattus norvegicus 81 Sfpq ENSRNOG00000058461 ENSRNOT00000084202 2 1 1 80 5 145085574 145085675 ATGAACATGGGAGATCCCT 58 145085718 145085737 AGCTTCATAACCTATGCCAC 58 NA Rattus norvegicus 81 S100a13 ENSRNOG00000012393 ENSRNOT00000016519 1 1 1 80 2 189907100 189912289 ATTTGCTCAAGGATGTGGG 58 189912333 189912351 CATTGAACTTCAGCTCCGA 58 NA Rattus norvegicus 81 Rn60_10_0631.1 ENSRNOG00000043259 ENSRNOT00000065209 2 1 1 60 10 63320432 63320450 CGAGACCTTCAACCAAGTG 59 63320473 63320492 GAACTTACCTAGGTAGTGGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cmpk1 ENSRNOG00000007775 ENSRNOT00000010318,ENSRNOT00000081051 3 2 2 81 5 133766381 133786200 CGCATTGTTGAGAAATATGGC 59 133766320 133766340 ACTGTGAATCTGGATTCTTCC 58 NA Rattus norvegicus 81 Actl7b ENSRNOG00000016621 ENSRNOT00000022291 3 1 1 60 5 73493270 73493288 CTCATGCAGCTACTCAACG 59 73493228 73493247 CTATAATGTGCAGGTGGTCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC362901 ENSRNOG00000031383 ENSRNOT00000040687 2 1 1 80 7 75565048 75565067 TCCAAATCTGCAGGATCTCC 60 75559708 75565011 CATTTAGTAGGTTATAAGGTGTGGG 59 NA Rattus norvegicus 81 Lima1 ENSRNOG00000059801 ENSRNOT00000091702 3 1 1 81 7 141452372 141452390 CAAATGGGAGCAGAAGGAG 58 141445533 141452327 AGTTGCAGAAACCTTGCTC 59 NA Rattus norvegicus 81 LOC291543 ENSRNOG00000023960 ENSRNOT00000039569 1 1 1 80 18 60835514 60835553 AAGGCTGAGAATTTCAAGCTG 59 60835454 60835473 CCATTTGATGTTAGCGGGAC 59 NA Rattus norvegicus 81 Ndrg4 ENSRNOG00000012482 ENSRNOT00000051414,ENSRNOT00000017494,ENSRNOT00000017413 3 3 3 80 19 9774075 9774301 GTGGGTCTCAATCACAAGC 59 9774013 9774031 CACCACGAAGTGTTTGGTG 60 NA Rattus norvegicus 81 Sntb2 ENSRNOG00000020344 ENSRNOT00000027561 3 1 1 80 19 39194950 39194968 ATGACTGTATGCCGTGGAC 60 39195012 39199497 AATGAACCAACCTTGTGGC 59 NA Rattus norvegicus 81 Acpt ENSRNOG00000021659 ENSRNOT00000079199,ENSRNOT00000032200 3 2 2 82 1 100229678 100229696 CCCTCGATACCATGAGCTG 60 100229538 100229632 TCAAGAAGTCTGTCCAGCC 59 NA Rattus norvegicus 81 Tmem81 ENSRNOG00000028752 ENSRNOT00000035335 2 1 1 99 13 49277767 49277787 GTCCTGGTTCACTTAGAAGAG 58 49277848 49278665 CTTAAACCCACAGGCTTCC 59 NA InUTR Rattus norvegicus 81 LOC686411 ENSRNOG00000049738 ENSRNOT00000072579 2 1 1 97 1 225628506 225631413 GCTATGAAACTAATGCTGGC 57 225628428 225628446 CTCAAGTTCCTTCCTCAGG 57 NA Rattus norvegicus 81 LOC102552732 ENSRNOG00000023397 ENSRNOT00000031916 1 1 1 80 14 22870894 22870912 AACTGCTCAACAGCTACCT 59 22869118 22870851 TCTTACAGAGCCCTCTACAG 58 NA Rattus norvegicus 81 Vom1r9 ENSRNOG00000054409 ENSRNOT00000079558 1 1 1 60 1 60249071 60249090 CCATCATGCCAAGAAACTCC 59 60249107 60249131 CTAATGTCCATTGTAGACTTGACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060979.1 ENSRNOG00000030177 ENSRNOT00000048263 2 1 1 85 4 102124173 102124572 TCTGGATCCAGGAAACCAG 59 102124106 102124124 GATGGAGACTGACTGTCCA 58 NA Rattus norvegicus 81 RT1-T24-4 ENSRNOG00000042905 ENSRNOT00000047439 1 1 1 80 20 3196336 3196354 CTGTGGCCATTATTGGAGC 59 3196397 3196593 CTTTCCCACCTGTGTTTCTC 59 NA Rattus norvegicus 81 Ffar4 ENSRNOG00000021763 ENSRNOT00000034563 3 1 1 108 1 256786640 256786658 CTGCTGGCTTTCATATGGG 59 256786729 256796427 AAATCGGAATTTCCTGGTCC 58 NA Rattus norvegicus 81 Olr663 ENSRNOG00000047879 ENSRNOT00000049513 3 1 1 60 3 77525180 77525200 GCAGCAGTAGAAGTGATTGTC 59 77525140 77525159 TGCAAATGGCTACATAACGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dgat2l6 ENSRNOG00000038046 ENSRNOT00000076852,ENSRNOT00000029046 3 2 2 81 X 70372222 70373119 CTCACAGTCAAGATGGTAGG 58 70373161 70373181 TTTACTGGGAAGTAGCTTTGG 58 NA Rattus norvegicus 81 Tll1 ENSRNOG00000033528 ENSRNOT00000065642 3 1 1 80 16 27594622 27594643 TGTTGAAGTCTTTGATGGTCTC 59 27594683 27596057 TAGATTTCTTCTGGTGGCCC 60 NA Rattus norvegicus 81 Vps72 ENSRNOG00000021081 ENSRNOT00000028625 3 1 1 80 2 196278156 196284102 CTTCACTGAGGAGTCTGGA 58 196284143 196284164 ATGTCAAAGTCAGAGTCTACCT 59 NA Rattus norvegicus 81 Myh7 ENSRNOG00000016983 ENSRNOT00000024186 2 1 1 80 15 33635445 33636621 TCACCTACCAGACAGAGGA 59 33635383 33635402 CCTTCACCTTTAACTGCAGC 60 NA Rattus norvegicus 81 Bloc1s6 ENSRNOG00000037160 ENSRNOT00000056083 1 1 1 144 3 114876145 114878164 ATGCTTTGTTCACGGAAGC 60 114878649 114878668 CTCTCCAGCTCCTCTTTCTG 60 NA Rattus norvegicus 81 Bloc1s6 ENSRNOG00000037160 ENSRNOT00000056083 3 1 1 147 3 114876141 114878161 ATCAATGCTTTGTTCACGGA 59 114878649 114878667 TCTCCAGCTCCTCTTTCTG 58 NA Rattus norvegicus 81 Psmb11 ENSRNOG00000047091 ENSRNOT00000073767 3 1 1 60 15 33271254 33271272 ACGAAAGGTCATCCCTGTG 60 33271296 33271314 GTCAGCAGAGGTTCCAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000085124,ENSRNOT00000019265 1 4 9 60 9 81548478 81548496 AGGAGGAAGCACTGTTGAC 60 81548519 81548538 TGAAGGGCTACGATTATCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp541 ENSRNOG00000021800 ENSRNOT00000058241 2 1 1 80 1 77986173 77986193 TGAGAATGTAGCTTCTCTGGT 59 77986235 77986553 AGTTCCATCACTCTGTCCT 58 NA Rattus norvegicus 81 LOC103690304 ENSRNOG00000053992 ENSRNOT00000082085 1 1 1 60 15 27652919 27652937 CTTCCTGGCAGTAATGGCT 60 27652877 27652895 AGGGTAATGTAATGGGCGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100359766 ENSRNOG00000049553 ENSRNOT00000074483 3 1 1 92 15 29623449 29623562 CTTTCTCATGAGAGTTGCCC 59 29623376 29623394 TTGCATTTCAGCTGCAGAG 59 NA Rattus norvegicus 81 Sycp3 ENSRNOG00000005270 ENSRNOT00000007088 3 1 1 82 7 29034263 29034739 ATTGAAGATGTGGGAGGTG 57 29037103 29037121 TTCTTCTTGGCCAGAAGAG 57 NA Rattus norvegicus 81 Pgm1 ENSRNOG00000009889 ENSRNOT00000013785 3 1 1 81 5 118776122 118776142 ACTTGAAGGTAGACCTCAGTG 59 118776185 118777487 ACGATCTCCACTGTGAAGG 59 NA Rattus norvegicus 81 Bdkrb1 ENSRNOG00000004488 ENSRNOT00000005953 3 1 1 154 6 129438235 129439358 TTTCTATCCGGACCACAGC 60 129439476 129439494 GTCTTCTAGGGCACTCTCG 59 NA InUTR Rattus norvegicus 81 Kcnip1 ENSRNOG00000005365 ENSRNOT00000040737,ENSRNOT00000079031,ENSRNOT00000083090,ENSRNOT00000007187 2 4 4 80 10 18571047 18571819 AAGTTCGAGGACTTTGTGAC 58 18570986 18571006 CAAATTAAACGTCCACCTCAG 58 NA Rattus norvegicus 81 Eda ENSRNOG00000032208 ENSRNOT00000076977 3 1 1 60 X 69730768 69730786 CCAGGAGAAGATCCACTCC 59 69730810 70131328 AATTCAGGAGTGCCATCTG 58 NA DesignRelaxed Rattus norvegicus 81 Ppp1r15b ENSRNOG00000028493 ENSRNOT00000037039 3 1 1 60 13 49935400 49935421 ACTTTCTGGAGAAAGATACACC 58 49935439 49937884 AACTTCTTCAAGGAAGGTTACC 58 NA DesignNoJunction Rattus norvegicus 81 Sall2 ENSRNOG00000013287 ENSRNOT00000078180 2 1 2 120 15 28733452 28733470 TTGTGTCCTAACCCATCCC 59 28732974 28733368 CCTCACTAGCATCACCTCC 59 NA InUTR Rattus norvegicus 81 Grm7 ENSRNOG00000005662 ENSRNOT00000056570 3 1 1 80 4 143086153 143086172 GACAACAAACACAACCAACC 58 143086213 143187915 TGCATGTCCTCTATATTGAGC 58 NA Rattus norvegicus 81 Nlrp4a ENSRNOG00000042030 ENSRNOT00000043739 1 1 1 80 1 69336242 69369634 CTTAGAGGATCTTGGGTTGGA 59 69336182 69336204 CTACACTGGGTAAATGTAGAAGC 59 NA Rattus norvegicus 81 Depdc5 ENSRNOG00000018144 ENSRNOT00000067694,ENSRNOT00000085788 1 2 2 80 14 83139921 83139941 CAGAACCTTCCATAAGGTGAC 59 83139387 83139882 GCAGATTCATAAGGGTACTTGG 59 NA Rattus norvegicus 81 Slc35d1 ENSRNOG00000022967 ENSRNOT00000032126 1 1 1 80 5 122743357 122743375 GCCCATGTTTACAGTCCTG 59 122742533 122743318 GAGAAAGTCTTCTTAAGTAGAGCG 59 NA Rattus norvegicus 81 Sprtn ENSRNOG00000021330 ENSRNOT00000038257 2 1 2 90 19 57651010 57651028 CTATGAAGGGAGAGGAGGC 59 57651081 57653039 GTGGTAGACCTCTACAAGGT 58 NA Rattus norvegicus 81 RGD1563072 ENSRNOG00000048060 ENSRNOT00000075558 1 1 1 60 5 144634224 144634244 CTCCAACCAGACAGTAATTCC 59 144634264 144634284 GCCAGTTCTTATTAGCATCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017694.1 ENSRNOG00000047938 ENSRNOT00000074419 3 1 1 105 15 30174047 30174160 TTCTCCTAAGAGTTGCCCA 58 30173960 30173978 CCAGGTGTGGAATACTTGC 59 NA Rattus norvegicus 81 Lilrb3l ENSRNOG00000053260 ENSRNOT00000080799,ENSRNOT00000087669,ENSRNOT00000080820 3 3 4 80 1 63844682 63844703 AATATCGCTGCTACTGTTACAG 59 63844743 63844888 AGTAGATTCCTGTCACCACC 59 NA Rattus norvegicus 81 Mlc1 ENSRNOG00000032871 ENSRNOT00000055879 2 1 1 80 7 129958280 129958728 GTCCTAAAGTCCTATTCTGTGG 58 129958221 129958242 CTCTACATTTAGAGCGATCACC 59 NA Rattus norvegicus 81 Cckbr ENSRNOG00000017679 ENSRNOT00000024077,ENSRNOT00000085395 1 2 2 80 1 170262336 170262354 TCTCAACAGCAGTAGTGCC 60 170262397 170269735 GCCATCTCCAATTCTCTGGT 60 NA Rattus norvegicus 81 Ormdl3 ENSRNOG00000030445 ENSRNOT00000049621 2 1 1 80 10 86547463 86547787 ATTGTGCTGTACTTCCTCAC 58 86547402 86547420 ACTCATCAAGGACACAGTG 57 NA Rattus norvegicus 81 Ufd1l ENSRNOG00000047394 ENSRNOT00000071493 1 1 1 80 11 86305665 86310098 GGTTGAAGAGGATGAAGCTG 59 86305604 86305622 GGCTTTCTTCCCTTCTTCC 58 NA Rattus norvegicus 81 Itpk1 ENSRNOG00000008051 ENSRNOT00000010656,ENSRNOT00000080829 3 2 2 80 6 126487122 126487141 CATCAGGACCCTGTTAGACC 60 126470389 126487085 CAGATCCTGTCATCTTTCATATAGG 59 NA Rattus norvegicus 81 Slc22a18 ENSRNOG00000020562 ENSRNOT00000027925 2 1 1 80 1 216678303 216678324 CATCATACTCACCTATGTGCTG 59 216678362 216681481 CGAGACAGATATGGTATGATGG 58 NA Rattus norvegicus 81 Clec4a3 ENSRNOG00000010018 ENSRNOT00000013308 2 1 1 80 4 155915378 155916294 GGAAGAGCAGGATTTCCTG 58 155915316 155915334 TGTCGATGACCTGGATCTG 59 NA Rattus norvegicus 81 Sphk1 ENSRNOG00000010626 ENSRNOT00000032163,ENSRNOT00000088457,ENSRNOT00000079080,ENSRNOT00000083593 3 4 4 96 10 105503087 105503354 GAACTACTATGCTGGGCAC 58 105503414 105503432 CAGATTCATGGGTGACAGC 59 NA Rattus norvegicus 81 Ralbp1 ENSRNOG00000013461 ENSRNOT00000035606,ENSRNOT00000084884 2 2 2 80 9 113587793 113587814 AGATTATGGGAAGTACAGAGGA 58 113584945 113587753 CTTGGTCTCACACTCTTGTC 58 NA Rattus norvegicus 81 Hist1h2ba ENSRNOG00000016865 ENSRNOT00000022630 2 1 1 60 17 43423194 43423213 GGGTTCAAGAAAGCAGTCAC 60 43423236 43423254 GGCATCTCTTACGTTTCCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnmb3 ENSRNOG00000027836 ENSRNOT00000058860 1 1 1 167 2 118874813 118874832 GCATAAGCAATGGAGATCCC 59 118870406 118874683 CTTCTCTGGGAGAGCTGAG 59 NA Rattus norvegicus 81 Vkorc1l1 ENSRNOG00000018291 ENSRNOT00000024691 3 1 1 90 8 16329668 16333387 ATTACTTGGCATGACAGCC 58 16333441 16333459 GTAGGCCAGGTACAAAGAC 58 NA Rattus norvegicus 81 Clip4 ENSRNOG00000008806 ENSRNOT00000065421,ENSRNOT00000085708 1 2 2 80 6 23231004 23233639 TTTGCTCCAGGGTATTGGT 59 23230942 23230960 ATACTGCACACCTCCAACC 60 NA Rattus norvegicus 81 Atp2b4 ENSRNOG00000003031 ENSRNOT00000046273,ENSRNOT00000004078 2 2 2 80 13 50120948 50120966 CCCAAGAAGGAGAAGTCGG 60 50121010 50123838 AGACATGATCAGACCTGCC 59 NA Rattus norvegicus 81 Opn1sw ENSRNOG00000006874 ENSRNOT00000009278 3 1 1 80 4 56654510 56655239 CTTCATGAATAAGCAGTTCCG 58 56654450 56654468 CCAGACATGTCAGATTCGT 57 NA Rattus norvegicus 81 Mrps16 ENSRNOG00000006898 ENSRNOT00000009207 2 1 1 165 15 4352587 4352605 TAGTTGCTCTCAACCTGGA 58 4353515 4353535 AAGAAGACTTCTCTTGCTCTC 58 NA DesignNoJunction Rattus norvegicus 81 Tmed4 ENSRNOG00000005016 ENSRNOT00000078572,ENSRNOT00000006802 3 2 2 80 14 86394417 86394437 GACCATCAGATTTGTCTGCAC 60 86394130 86394377 GATATCCAAGTGTACACGCAG 59 NA Rattus norvegicus 81 Cdh9 ENSRNOG00000033837 ENSRNOT00000043050 2 1 1 80 2 67049329 67049347 CATCAACGACAATGAGCCC 59 67049391 67053417 ACAGAGGTACCAACTCCAG 58 NA Rattus norvegicus 81 Snrpep2 ENSRNOG00000034206 ENSRNOT00000040164 1 1 1 60 1 141503965 141503988 CAGATAGAGGGTTGTATTATTGGC 59 141503928 141503948 CTGCATCATCTAATACGAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bcl11b ENSRNOG00000005776 ENSRNOT00000088421 1 1 3 80 6 131912781 131912803 GATGAAGATGACCATCTACTGTC 59 131838871 131912742 GGAAGGCTCATCTTTACCTG 58 NA Rattus norvegicus 81 Ccdc148 ENSRNOG00000057740 ENSRNOT00000091777,ENSRNOT00000086371 2 2 2 80 3 45117461 45117480 AGATGCTGATCAAGCAACAC 59 45112905 45117423 CAGACTCCAATTTACATCTGATCC 59 NA Rattus norvegicus 81 Usp32 ENSRNOG00000027711 ENSRNOT00000036814,ENSRNOT00000081649 2 2 2 80 10 72323969 72323990 TGGATTCAAGTATCTCGATTGG 58 72320269 72323929 CATGCTGTCATCACAATCCT 58 NA Rattus norvegicus 81 Hadh ENSRNOG00000010697 ENSRNOT00000014658 1 1 1 80 2 236354244 236355489 TTCATCTTAGACGGGTGGC 60 236354182 236354202 GGCCACCAAATTATTCATGGA 59 NA Rattus norvegicus 81 Npb ENSRNOG00000036685 ENSRNOT00000054953 2 1 1 96 10 109786436 109786529 CAAGCGTAAGAAGCCTTGC 60 109786588 109786607 TTACACTGGAAAGTCCCTCG 60 NA DesignNoJunction Rattus norvegicus 81 Ahi1 ENSRNOG00000013969 ENSRNOT00000019076 1 1 1 80 1 16483887 16487092 GGGCATTTCTTAAGCTCCT 58 16487136 16487154 TAGGTGGGTAGTAGAGCTG 57 NA Rattus norvegicus 81 LOC100910017 ENSRNOG00000033024 ENSRNOT00000043610 3 1 1 60 5 78392800 78392819 AAGCGTAATGAGGATGAGGA 59 78392759 78392777 CAGGCACGTAAGTTACCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Begain ENSRNOG00000004650 ENSRNOT00000041903,ENSRNOT00000082216 2 2 2 80 6 132943697 132943717 CTATCTGGAGATTGAGCTGAG 58 132942511 132943655 TAGTTGCTCTGAATCCTGC 57 NA Rattus norvegicus 81 LOC100910885 ENSRNOG00000046779 ENSRNOT00000091911,ENSRNOT00000074245 1 2 2 95 7 118712039 118714433 GCACTCCAGAGAAGAAATGC 59 118714491 118714509 CCTCTTCAGTCAGCAGGAG 60 NA Rattus norvegicus 81 Tmem86b ENSRNOG00000038607 ENSRNOT00000041527 2 1 2 82 1 72785136 72785573 TCAGACCAATATCCACAGGT 58 72785618 72785636 TCAGGAATCCAGAGGAGGA 59 NA Rattus norvegicus 81 Rnase12 ENSRNOG00000042612 ENSRNOT00000064936 1 1 1 60 15 27981560 27981578 ATTTGCATGTGGACTACCC 58 27981518 27981539 AGAATCATGTAGTTGCAGTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhga8 ENSRNOG00000027277 ENSRNOT00000027009 1 1 1 60 18 30876336 30876355 GGCAGACACTAATGACAACC 59 30876376 30876396 TGGAATATAGGCTGTGTAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd9 ENSRNOG00000008056 ENSRNOT00000010610 2 1 1 81 6 135412210 135412230 CACCTCTGTAACCCAATTACC 58 135411812 135412167 CATCAGGAATGAGCTCCTG 58 NA InUTR Rattus norvegicus 81 AABR07027447.1 ENSRNOG00000047534 ENSRNOT00000071312 1 1 1 60 17 31706404 31706424 GGCAAGACATACTTGAATTGG 58 31706364 31706383 AGATCAGGAACTGAGGAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stk36 ENSRNOG00000016913 ENSRNOT00000022839 3 1 1 80 9 81880910 81881878 AATACAGTGCTCAGGTGGT 59 81881922 81881940 CTCGTTGCAGATTCCTCAG 58 NA Rattus norvegicus 81 Gabpb1 ENSRNOG00000010659 ENSRNOT00000045443 3 1 1 80 3 119113901 119113920 CACTGTGACAATACATGCTG 57 119113521 119113860 ACTCCTGTTTCATCTGTAAGG 58 NA Rattus norvegicus 81 AABR07017745.4 ENSRNOG00000061290 ENSRNOT00000072978 2 1 1 92 15 30557609 30606116 CCTAATGCTCAGGAGGAGC 60 30606172 30606190 GTGCAGTTCAGCATCACAG 60 NA Rattus norvegicus 81 Lrrc10b ENSRNOG00000030180 ENSRNOT00000050716 3 1 1 60 1 226501724 226501742 CGGAGGAGATAGAGGAGCT 60 226501682 226501700 TCCAGCTTGTTGAAGTCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chst3 ENSRNOG00000000572 ENSRNOT00000000697 2 1 1 89 20 29737142 29738278 TCATATCCAGGGTCTCCGA 59 29737071 29737089 TTTCCGATAAGAGCAGGGC 60 NA Rattus norvegicus 81 LOC685431 ENSRNOG00000049269 ENSRNOT00000073655 2 1 1 60 4 149801038 149801057 GGTGTCCATTGAAGATCCCT 60 149800994 149801015 AGTAGCTGTGAGCTTCTGG 59 NA DesignNoJunction Rattus norvegicus 81 Olr260 ENSRNOG00000047602 ENSRNOT00000049903 1 1 1 60 1 172600015 172600034 ATGTCTTCCCAAATATGCCT 57 172600057 172600075 CGTTAATACAGCCACCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr260 ENSRNOG00000047602 ENSRNOT00000049903 2 1 1 60 1 172600015 172600035 ATGTCTTCCCAAATATGCCTC 58 172600057 172600075 CGTTAATACAGCCACCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC679960 ENSRNOG00000003062 ENSRNOT00000004086 1 1 1 60 X 72449069 72449090 CACAAACAAGTTCTACATGCTG 59 72449110 72449129 TCTTTCCCACTGTAACACTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Raet1d ENSRNOG00000023659 ENSRNOT00000028992 2 1 1 80 1 1474804 1474824 AGTGCAGTCTTTCTCTGAGTC 60 1473575 1474766 TAACAGAGTGTACATCGTCTAGC 60 NA Rattus norvegicus 81 Asb2 ENSRNOG00000051619 ENSRNOT00000085517 1 1 1 80 6 127212858 127215203 AAGGAGAAGGCAGAACCTC 59 127212796 127212816 TATCCGGTATTTCCCTATGGC 59 NA Rattus norvegicus 81 Hmmr ENSRNOG00000059894 ENSRNOT00000085499 2 1 1 80 10 25873283 25873711 GAAGCAGAAAGAGATGATCTCC 59 25873224 25873244 CTCTGTTAGAACCTGCATCTC 58 NA Rattus norvegicus 81 Tspan11 ENSRNOG00000054360 ENSRNOT00000087834 3 1 1 80 4 160495386 160495404 GTCATGACAACTGGCTTCC 59 160495446 160510246 CAACAGGCAGAAATATGTGGA 59 NA Rattus norvegicus 81 LOC100910500 ENSRNOG00000046648 ENSRNOT00000075355 1 1 1 60 15 35889856 35889875 ATTCATGTACCTTCAGCCCT 59 35889898 35889916 CACAGACGACACTTTCCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps15 ENSRNOG00000024603 ENSRNOT00000029791 2 1 1 84 7 12282437 12282455 ATCATTCTGCCCGAGATGG 60 12282271 12282390 TCATCTCGGGTTTGATCTCC 59 NA Rattus norvegicus 81 Zfp598 ENSRNOG00000012434 ENSRNOT00000065827 2 1 1 81 10 14044442 14044460 AACAAACGGTCCTGTAAGC 58 14044505 14044623 TGGTGGGAGGGTATTTGAG 59 NA Rattus norvegicus 81 Vom2r31 ENSRNOG00000031562 ENSRNOT00000047147,ENSRNOT00000090708 3 2 2 83 1 74978363 74978383 CTTATGGGACCGAATTTGTGG 59 74978423 74985459 GAAGGAAATCTGAAGGAAATGAGG 60 NA Rattus norvegicus 81 Eapp ENSRNOG00000004509 ENSRNOT00000006030 2 1 1 80 6 75589124 75589143 CTCCAGGATGACTATGACCC 59 75581885 75589083 CACTTCATCTTCAGAACTGCT 58 NA Rattus norvegicus 81 Usp3 ENSRNOG00000017714 ENSRNOT00000057739,ENSRNOT00000080319 3 2 2 80 8 72235633 72237231 AAAGTAAATGGAAGTACGGCTG 59 72235574 72235595 AAGGATAGCATTCATGAAGCAC 59 NA Rattus norvegicus 81 AABR07017825.3 ENSRNOG00000048128 ENSRNOT00000072946 3 1 1 62 15 31462833 31462949 GGGATAAACTTTCTCCTGAGAG 58 31462969 31462990 GACATGAACATCAGGTTGAGTC 59 NA DesignNoJunction Rattus norvegicus 81 Mir142 ENSRNOG00000035633 ENSRNOT00000053756 1 1 1 60 10 75050848 75050869 GTCACCCATAAAGTAGAAAGCA 59 75050887 75050908 TAAAGTAGGAAACACTACACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 N4bp2 ENSRNOG00000027152 ENSRNOT00000031792 2 1 1 80 14 44054750 44055400 GGTGTTGACTCAGGGTCTC 60 44054688 44054711 CTTCTCATGAATCACTTTAGCCAG 60 NA Rattus norvegicus 81 Pfn3 ENSRNOG00000047752 ENSRNOT00000072298 3 1 1 152 17 9746752 9746770 TTATCCGTGACTACCTGCT 58 9746885 9746904 TCTTATTGAGGATGCCTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912008 ENSRNOG00000005247 ENSRNOT00000061242 3 1 1 80 3 4870268 4870286 GTATTACCGGGACCTGGAC 59 4870059 4870226 GTTGTGCTATTGAAGTCTGCA 59 NA Rattus norvegicus 81 Crcp ENSRNOG00000000901 ENSRNOT00000001202,ENSRNOT00000079176 3 2 2 95 12 30144014 30144033 CAATGAAGAGCCACAAGCTG 60 30126321 30136745 TCTCTTCCACCATCAGCTG 59 NA Rattus norvegicus 81 Gabrg1 ENSRNOG00000002360 ENSRNOT00000003240 3 1 1 80 14 40032366 40032385 CAGTTGTTCTTTCCTGGGTG 59 40032427 40035013 AAACCGTAGTGATACCCAGG 59 NA Rattus norvegicus 81 Mc3r ENSRNOG00000004451 ENSRNOT00000005871 3 1 1 60 3 170253298 170253316 TTATCAACAGCGACTCCCT 58 170253339 170253358 AAGATGTTGTCCATGTGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctnnbip1 ENSRNOG00000016313 ENSRNOT00000055562 2 1 1 65 5 166491769 166491788 GTACATTCAGCAGAAGGTCC 58 166491816 166492435 CTGGCAGTCAGATTTGACC 59 NA DesignRelaxed Rattus norvegicus 81 Pars2 ENSRNOG00000007327 ENSRNOT00000057471 3 1 1 197 5 126254173 126255962 TATAGAGTGCTGCTGGTGC 60 126256122 126256141 AACCTTCCATGATACCCTGG 59 NA InUTR Rattus norvegicus 81 Ceacam6 ENSRNOG00000030331 ENSRNOT00000057600,ENSRNOT00000034553 3 2 2 81 1 81685452 81685476 CTGGAATCTACCACCTAAATATCCA 60 81685511 81689071 CTTAACAGAGGGTACACAAAGAC 59 NA Rattus norvegicus 81 Rhbdd2 ENSRNOG00000001443 ENSRNOT00000001962 1 1 1 80 12 24095617 24098144 ATAGGCCTATCATATGGCCTC 59 24095557 24095578 AAACTTCTGATCAAGCTTCAGG 59 NA Rattus norvegicus 81 Rhbdd2 ENSRNOG00000001443 ENSRNOT00000001962 3 1 1 80 12 24095615 24098140 GCCTATCATATGGCCTCAC 58 24095553 24095572 AGGGAAACTTCTGATCAAGC 58 NA Rattus norvegicus 81 LRRTM1 ENSRNOG00000006093 ENSRNOT00000007993 3 1 1 287 4 108301667 108301960 AAAGGATTTCTGACCCAGC 58 108302211 108302229 TTGTAGCGCAAAGACAAGC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Slc44a5 ENSRNOG00000042332 ENSRNOT00000089358,ENSRNOT00000064249 2 2 2 80 2 260527416 260527529 GGGATTGTAGGTGTCTTGG 58 260527570 260527591 GTAATTTAAACTCGTTGGTCCC 58 NA Rattus norvegicus 81 Angptl2 ENSRNOG00000016678 ENSRNOT00000022585 1 1 1 80 3 12275376 12288419 TGATAAGCCATCAGGTCCA 58 12288463 12288481 TTCACCAGGTAGATGGAGC 59 NA Rattus norvegicus 81 Hist3h3 ENSRNOG00000056281 ENSRNOT00000083417 3 1 1 61 17 44839800 44839818 TTGAGGACACCAACCTGTG 60 44839757 44839776 GATATCCTTGGGCATGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006259.1 ENSRNOG00000046782 ENSRNOT00000054811 3 1 1 80 1 227170055 227171038 AATCTGTCGACTTTGAAGGTG 59 227169299 227169318 CTTATCCTTCACGCTCACAG 59 NA Rattus norvegicus 81 Mroh7 ENSRNOG00000058870 ENSRNOT00000089934 2 1 1 81 5 126316186 126316204 ACCTCAGAAGATGCGAAGG 60 126313391 126316144 ACGAGATGATGTTCTCTACCAG 60 NA Rattus norvegicus 81 Kif20b ENSRNOG00000018929 ENSRNOT00000085880,ENSRNOT00000054753 3 2 2 80 1 253251952 253251972 GATTGTGCTGAGCTAAAGGAG 59 253252013 253253004 ACGCATTACAGATACCTCCC 59 NA Rattus norvegicus 81 Lgals1 ENSRNOG00000009884 ENSRNOT00000013538 2 1 1 80 7 120154461 120154480 AACCTGAATCTCAAACCTGG 58 120154523 120155726 CAGGTTCAACACAAAGCTC 57 NA Rattus norvegicus 81 Olr852 ENSRNOG00000018362 ENSRNOT00000024724 3 1 1 60 5 69751768 69751786 CTCTGTGAAATCCTGGCTG 58 69751726 69751747 TGAATTCATTGCCTGAGATGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003171.1 ENSRNOG00000027102 ENSRNOT00000030895 1 1 1 80 1 97780151 97780173 CCAAATACCACTCTTTACCTCTG 59 97780213 97781426 GTCTCCATTTGAACCACGG 59 NA Rattus norvegicus 81 Elac1 ENSRNOG00000000113 ENSRNOT00000000125 3 1 1 130 18 69711132 69716304 TAAAGCAGGGAGAATCACCA 59 69711021 69711040 AGATCTCAATAGGCTGCCTG 59 NA Rattus norvegicus 81 Dusp5 ENSRNOG00000014061 ENSRNOT00000018889 3 1 1 80 1 274245724 274250024 TACTTCCTTAAAGGTGGGTACG 60 274250064 274250083 CTCTTGTGAAATGGGCTTCG 60 NA Rattus norvegicus 81 Thop1 ENSRNOG00000019924 ENSRNOT00000027045,ENSRNOT00000082486 1 2 2 80 7 11502010 11502028 GACAGATGTAGACCCAGCT 59 11501766 11501965 CATGTTGGTACCTGGTGTG 59 NA Rattus norvegicus 81 Klb ENSRNOG00000002834 ENSRNOT00000003811 2 1 1 77 14 44548544 44613097 GGACACAACCTGATCAAGG 58 44548485 44548503 CCAACCCTTCTGATGAGGG 60 NA DesignNoJunction Rattus norvegicus 81 Mir3120 ENSRNOG00000035513 ENSRNOT00000053636 2 1 1 64 13 80130985 80131003 TCATGTGACTGCCTGTCTG 60 80130939 80130957 GTCTACACTTGCTGTGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncapd2 ENSRNOG00000055300 ENSRNOT00000083016 2 1 1 80 4 157684742 157684760 ATGAGTCTGTCTTCAGTGC 57 157683754 157684698 CTATTACAGCCTTGCCCTC 58 NA Rattus norvegicus 81 Usp54 ENSRNOG00000027012 ENSRNOT00000083467,ENSRNOT00000029615 2 2 2 80 15 4183286 4183305 TTCAAAGACTCCAACAGCAG 59 4183346 4187313 ACGTTTGATGAATCCTGAGAG 58 NA Rattus norvegicus 81 Ctsl ENSRNOG00000018566 ENSRNOT00000025462 3 1 1 80 17 1876234 1876465 CCTATGAAGCAAAGGATGGA 57 1876173 1876191 GAGGGATATCCACAAACCC 57 NA Rattus norvegicus 81 Psgb1 ENSRNOG00000027288 ENSRNOT00000037132 3 1 1 80 1 79187827 79187848 ATTGTACACCCTAGGAATTCTG 58 79187889 79189079 AACACAAGACTCTCCACCT 58 NA Rattus norvegicus 81 Ugdh ENSRNOG00000002643 ENSRNOT00000003691 3 1 1 80 14 44498608 44498628 TCCAAGGATCCATATGAAGCA 59 44498667 44498804 ATCCAGTTCCTTAAACATGTCC 59 NA Rattus norvegicus 81 Lrrc3b ENSRNOG00000005857 ENSRNOT00000007672 3 1 1 60 15 11299136 11299155 ATGTGGTGTACTACGTGAGG 59 11299176 11299196 TTCAAGTATTCCAGGTGTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1311575 ENSRNOG00000002139 ENSRNOT00000002908 1 1 1 80 14 33670688 33670706 GACTTCGTCCTCACCAGTC 60 33668300 33670646 ATCACTGGATTTGTTCTCCGT 60 NA Rattus norvegicus 81 Pvrl2 ENSRNOG00000018730 ENSRNOT00000025388,ENSRNOT00000082125 2 2 2 127 1 80650275 80655213 CTCAGAGTCATAGCCCAGC 60 80650166 80650184 GAGATCCAGGTGATTCGGG 60 NA Rattus norvegicus 81 Spag6 ENSRNOG00000025787 ENSRNOT00000022328 3 1 1 82 11 88478484 88478502 TTTGACCCTGGAGTCAAGG 59 88478545 88483754 ACCACAGCTTGAGATAATTCTG 59 NA Rattus norvegicus 81 Med24 ENSRNOG00000008711 ENSRNOT00000011947 2 1 1 80 10 86644863 86644970 TCTCAACCTAGCAGAAGCAC 60 86644802 86644826 TACTTCAGGTAAGACAGGATAAGAG 59 NA Rattus norvegicus 81 Olr1l ENSRNOG00000053124 ENSRNOT00000087016 2 1 1 60 1 64481423 64481442 GTTTGCCTGGATGTTGTCTC 60 64481465 64481483 GCAGAAGAAGTGGTTGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Man1a1 ENSRNOG00000000800 ENSRNOT00000087342,ENSRNOT00000057422,ENSRNOT00000085465 1 3 3 80 20 35260444 35260794 GCAGAGACACTGAAGTATCTG 58 35260384 35260402 CTCGGTGTTGAAGATCCAG 58 NA Rattus norvegicus 81 RT1-CE16 ENSRNOG00000047706 ENSRNOT00000049540 3 1 1 60 20 3791658 3791677 AGCTGTGATCATTGTAGCTG 58 3791440 3791635 TCCACCTGTGTTTCTCCTC 59 NA DesignNoJunction Rattus norvegicus 81 Ins2 ENSRNOG00000020405 ENSRNOT00000027656 1 1 1 121 1 215857862 215857999 GCAAGCAGGTCATTGTTCC 60 215857759 215857777 GAGAACCACAAAGGTGCTG 59 NA InUTR Rattus norvegicus 81 Slc16a3 ENSRNOG00000036677 ENSRNOT00000086096 2 1 2 116 10 110138604 110144866 CCGTAACAGGTGAAACCAG 59 110144946 110144964 GAAACAGCCAAAGAGGACG 59 NA InUTR Rattus norvegicus 81 Usp8 ENSRNOG00000010729 ENSRNOT00000015124 1 1 1 80 3 119215844 119217559 GGATCTAAATAAGGCTGACAATCG 60 119217597 119217616 TGTTCTGCCGCTTTAAAGTC 59 NA Rattus norvegicus 81 Taf5l ENSRNOG00000018027 ENSRNOT00000024491,ENSRNOT00000058652 1 2 2 80 19 56784321 56787155 TTCTCACTGATTCTGACTCCC 59 56784261 56784279 GGTTGAGGTGGAGGTAGAC 59 NA Rattus norvegicus 81 Il23r ENSRNOG00000007544 ENSRNOT00000010151 2 1 1 80 4 98254640 98280919 TGATATAGTGATACCTTCTCCATCC 59 98254584 98254605 CAGTAAATTATGGTCTTGGGCA 59 NA Rattus norvegicus 81 Fitm1 ENSRNOG00000019019 ENSRNOT00000025725 3 1 1 61 15 34252028 34252048 TGCAGTTTCACGTTAACTCTC 59 34252068 34252439 CTTTATGTTGAAGAAGTTGCCG 59 NA DesignNoJunction Rattus norvegicus 81 Ubxn10 ENSRNOG00000027731 ENSRNOT00000000167 1 1 1 60 5 157161089 157161107 CTTTACCAAGAGGAGGCCC 60 157161047 157161067 CTTGTGTTCTGGAGTCTTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ntsr2 ENSRNOG00000049054 ENSRNOT00000071387 1 1 1 80 6 41921863 41923284 CGATGATGGATGGACTAATGAG 59 41923325 41923343 GAGCTGACATAGAAGAGCG 58 NA Rattus norvegicus 81 Timm21 ENSRNOG00000015142 ENSRNOT00000020376 1 1 1 80 18 81805354 81805460 GAGTCAGCATTACAGGCAG 58 81805292 81805314 TCCCATAGATGATGTTAGGACTG 59 NA Rattus norvegicus 81 Adgrg5 ENSRNOG00000039891 ENSRNOT00000061270 2 1 1 80 19 10504707 10504728 GAGATACTGAACTTGATGAAGC 57 10504346 10504666 CAGGTGGTGGATAAACCTC 58 NA Rattus norvegicus 81 Ube2j2 ENSRNOG00000019749 ENSRNOT00000026752,ENSRNOT00000077602 3 2 2 80 5 173384613 173384716 CAACACAAGGCTGTGTCTC 59 173384759 173384778 GTTAGAATGGTGGAGACGGA 59 NA Rattus norvegicus 81 LOC102553180 ENSRNOG00000048674 ENSRNOT00000027402 1 1 1 60 18 29952438 29952456 GTGAACGACAATGCTCCTG 59 29952479 29952498 TATTCTCCTTCACGAACACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uba1 ENSRNOG00000019164 ENSRNOT00000031115 2 1 1 80 X 1735298 1736327 TTAGTGGTTTCCAGGTGGT 59 1735236 1735254 CACGGCTATGACAGAACTC 58 NA Rattus norvegicus 81 AABR07028748.1 ENSRNOG00000030638 ENSRNOT00000043042 2 1 1 99 17 84613312 84613330 CTTCCACCTTTGATGCTGG 59 84613133 84613249 AGCTGAGGTACCTGATTGG 59 NA Rattus norvegicus 81 Olr1627 ENSRNOG00000012510 ENSRNOT00000016674 1 1 1 60 15 26888586 26888605 TTCTACACCATCTTCACACC 57 26888628 26888646 CCTCTTTGTTTCTCAGCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpina12 ENSRNOG00000042634 ENSRNOT00000012960 2 1 1 82 6 127702789 127704651 CTATATTTACTTTCAAGGCAGGTGG 60 127702731 127702752 TGCCTTCCTCTATGAAGAAGTC 60 NA Rattus norvegicus 81 Dctpp1 ENSRNOG00000017850 ENSRNOT00000024074 1 1 1 85 1 198703827 198705709 GAACTCTTTCAGTGGAAGTCTG 59 198703763 198703781 CTAAGCTCCTCCTGAAGGG 59 NA Rattus norvegicus 81 Sssca1 ENSRNOG00000012736 ENSRNOT00000017034 2 1 1 82 1 221088499 221089050 GATAAAGATAACCCGGCTCTG 58 221088437 221088455 GCAGGCTCTGTAGTAGAGG 59 NA Rattus norvegicus 81 Mcpt1l3 ENSRNOG00000031792 ENSRNOT00000038253,ENSRNOT00000043182,ENSRNOT00000091167 1 3 3 82 15 35002485 35002503 ATGTCACCTTCTGTGGTGG 60 35002543 35003084 GACTGTGATTTCTCTTCCATTACAG 60 NA Rattus norvegicus 81 LOC680384 ENSRNOG00000029278 ENSRNOT00000047850 2 1 1 60 4 31705056 31705074 CTGGTAACTTACGTGCCTG 58 31705098 31705116 TCTCATCCACATTGACCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC289035 ENSRNOG00000027702 ENSRNOT00000033636 2 1 1 183 13 51218518 51218661 CCATTCCAGTTTCTATGGATCC 59 51220574 51220592 TGATTAGGGATGCCAGGAC 59 NA InUTR Rattus norvegicus 81 Tbc1d1 ENSRNOG00000002180 ENSRNOT00000029209 1 1 1 80 14 45683817 45683837 AATTAGAACTCCAGAAGCACC 58 45679908 45683778 GTCTCAATTTCTGAACTTCCTC 57 NA Rattus norvegicus 81 AABR07058091.2 ENSRNOG00000061264 ENSRNOT00000074953 3 1 1 80 7 99758044 99758485 GGACCTAGTTCAATGGGAGG 60 99757983 99758001 CGGTCTGTTTCCTTCAGGT 60 NA Rattus norvegicus 81 Cep85l ENSRNOG00000000414 ENSRNOT00000063920,ENSRNOT00000087220,ENSRNOT00000078420 2 3 3 80 20 34579170 34579191 AGTATTCTTAATCAACGCGCTC 59 34576300 34579131 AGCTGAACAGTTCATTGATCG 59 NA Rattus norvegicus 81 Ptchd3 ENSRNOG00000046946 ENSRNOT00000074372 1 1 1 80 10 111032516 111033360 TCTGGAAGACATAGAGGTGG 58 111033403 111033421 GGAATCACAGTCTTGGAGG 58 NA Rattus norvegicus 81 Tcf3 ENSRNOG00000051499 ENSRNOT00000077122,ENSRNOT00000085899 2 2 2 80 7 12157411 12157430 AGCAGCTCCCAGTATTACAC 60 12157473 12158079 CTTGGGCTGAGTATCCAGG 60 NA Rattus norvegicus 81 Ada ENSRNOG00000010265 ENSRNOT00000014151 1 1 1 80 3 160124504 160127322 CATCTTGTACTATGGCAAGAAGAG 59 160124447 160124465 TCCATGCCGATAATGTTGC 59 NA Rattus norvegicus 81 Ccdc59 ENSRNOG00000004183 ENSRNOT00000005740 3 1 1 81 7 47929932 47932406 CCGAGTACAGTAAATTCTGTGAC 59 47932445 47932465 GTTCATACTCTTCCTGTGCCT 60 NA Rattus norvegicus 81 LOC497963 ENSRNOG00000057443 ENSRNOT00000073138,ENSRNOT00000016133 1 2 2 80 10 66209960 66209979 AAGAGGAACAACTACTGCTG 58 66210022 66211638 ATTTCTTCAGAGTCTGCCC 57 NA Rattus norvegicus 81 LOC100361492 ENSRNOG00000001466 ENSRNOT00000001990 3 1 1 80 1 258246890 258246909 CAGAAACCACAAGCACTACC 59 258246951 258247900 CTTCCTGGACTTTAGCTGTG 58 NA Rattus norvegicus 81 Slc6a12 ENSRNOG00000013547 ENSRNOT00000018821,ENSRNOT00000089482 3 2 2 84 4 153936531 153936549 GATGATGCCTTTGTCCCAG 59 153936597 153937031 CATACAGACGAACTGGCTG 58 NA Rattus norvegicus 81 AABR07031019.1 ENSRNOG00000060785 ENSRNOT00000073032 3 1 1 80 10 112062320 112063731 AGGAGAAACATTGGTTCCC 57 112063775 112063793 GCTGTTTGTTTCTGATGGC 58 NA Rattus norvegicus 81 Tceanc2 ENSRNOG00000009398 ENSRNOT00000048784 3 1 1 81 5 126754877 126771154 TCGACAAGGATAGGTCATGC 60 126754815 126754835 TGTAAACTTCTTTGGCAAGGC 60 NA Rattus norvegicus 81 Serpind1 ENSRNOG00000001865 ENSRNOT00000084973,ENSRNOT00000031819 2 2 2 80 11 87915049 87916302 ACAAACAGAACCCGAGAGG 60 87914987 87915005 CATGGACTTGAGGACCTCC 60 NA Rattus norvegicus 81 Tnfrsf1b ENSRNOG00000016575 ENSRNOT00000022478 2 1 1 80 5 163146764 163147301 CCGTTCAAGAACCTCAAATGG 60 163146704 163146723 TCTGTGGATGATGTGGTGTC 60 NA Rattus norvegicus 81 Klrb1c ENSRNOG00000007811 ENSRNOT00000010312 2 1 1 80 4 162548841 162548859 TTTGGCTCTGAAACTTGGC 59 162548901 162549546 AGGAATCTCACGAAGACACTG 60 NA Rattus norvegicus 81 Vpreb1 ENSRNOG00000052348 ENSRNOT00000081776 3 1 1 173 11 88376312 88376330 CTGCTTCCTAGCTGGTCAG 60 88376553 88376572 AGGTTCCAAGGAAGGAAGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Slc25a2 ENSRNOG00000027359 ENSRNOT00000027128 3 1 1 60 18 30774757 30774777 CTGTCCCTTTGATGTTAAGTG 57 30774717 30774738 GGGAATATGATAAGCCAGAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Limk1 ENSRNOG00000001470 ENSRNOT00000001996,ENSRNOT00000084427 1 2 2 80 12 25060981 25062074 TCCTCAAGGAGGTGAAGGT 60 25062118 25062136 GCTTGTCCTTGTACAGCAC 59 NA Rattus norvegicus 81 Nedd8 ENSRNOG00000019895 ENSRNOT00000064916,ENSRNOT00000080232 1 2 2 60 15 34342123 34342142 TGACTGGAAAGGAGATTGAG 57 34341773 34342100 TCCTTGATTCGTTCCACCT 59 NA DesignNoJunction Rattus norvegicus 81 Ikbip ENSRNOG00000008247 ENSRNOT00000010914,ENSRNOT00000010929 1 2 2 171 7 31784583 31784601 GTGAAGAGCCGAAAGAAGC 59 31784736 31792212 GAAATACAAGCCAGGCCAG 59 NA Rattus norvegicus 81 Eif2b5 ENSRNOG00000038160 ENSRNOT00000002321 1 1 1 80 11 84087157 84087177 TCACAGACAACTTTGACTACC 58 84086860 84087118 TCTGATTTCCTAGGATCTCCTC 58 NA Rattus norvegicus 81 AABR07051741.1 ENSRNOG00000057548 ENSRNOT00000044699 3 1 1 60 3 20641910 20641929 GTTGCCACATATTTCTGCCA 59 20641951 20641970 TGCTATGGTTTGTATCACCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir876 ENSRNOG00000041320 ENSRNOT00000063073 1 1 1 60 5 52461696 52461717 GTGGATTTCTCTGTGAATCACC 59 52461657 52461678 GAATTACTTTGCAAACCACCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Frs2 ENSRNOG00000005642 ENSRNOT00000007472,ENSRNOT00000080983 3 2 2 89 7 60135864 60135882 ATCCTTCTGTGGGAAGTGC 60 60134030 60135817 CATAAGTATGTACTTGTTCCTCAGC 60 NA Rattus norvegicus 81 Myog ENSRNOG00000030743 ENSRNOT00000042046,ENSRNOT00000087240 2 2 2 85 13 51127558 51127576 GTGAATGCAACTCCCACAG 59 51127624 51128197 GAGCAAATGATCTCCTGGGT 60 NA Rattus norvegicus 81 Cdca4 ENSRNOG00000013898 ENSRNOT00000018596 2 1 1 142 6 137421116 137421134 GGGTTTGAACGAAAGCTCC 60 137398153 137421010 TAGCAAACATCCTGTCCGG 60 NA InUTR Rattus norvegicus 81 Mfn2 ENSRNOG00000046447 ENSRNOT00000065985 2 1 1 80 5 164563644 164565096 AAGTTCAGCAAGAATTGTCTGG 60 164563585 164563605 TTTCCTGCTCCAGATTATCCC 60 NA Rattus norvegicus 81 Lrrc4 ENSRNOG00000008098 ENSRNOT00000010673 2 1 1 60 4 56113509 56113527 ACATGCCCAATCTTACACC 58 56113467 56113486 AAGTGGTTCCCTGACATCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000085008,ENSRNOT00000090071,ENSRNOT00000084230 3 3 7 119 1 83653420 83653705 TCATGAAGATCAGCCAACGT 60 83653787 83653805 ATTCCTCAGCTTGGTCCAC 60 NA Rattus norvegicus 81 Hcrtr1 ENSRNOG00000013838 ENSRNOT00000018674 3 1 1 83 5 148351796 148351814 GGAATGCAGCAGTGTTCTG 60 148351447 148351749 TAGAGTTCATCTGCCCAGC 59 NA Rattus norvegicus 81 Ifi27l2b ENSRNOG00000026605 ENSRNOT00000032015 2 1 1 88 6 127336998 127337017 CAAGATGATGTCTGCTGCAG 59 127336505 127336952 CAAGTACACCTATTGACTGTAGTG 59 NA Rattus norvegicus 81 LOC100359752 ENSRNOG00000038241 ENSRNOT00000058219 3 1 1 80 18 81675252 81679369 ATATGAAGCTAAGATGGAGGC 57 81675192 81675211 CTAGCCATGAGTGAGTAGGA 58 NA Rattus norvegicus 81 Mum1 ENSRNOG00000024549 ENSRNOT00000060708 2 1 1 84 7 12344747 12344765 TCCAGGTTAAGAGCTCAGC 59 12342976 12344699 ACTTCATTCTGAGAGGCCA 58 NA Rattus norvegicus 81 RGD1560987 ENSRNOG00000022882 ENSRNOT00000032787 3 1 1 93 14 51439166 51439185 CTTAGGTGGCAACCTTGAC 59 51439242 51439260 CTCCCAAGTCCTCTTCAGG 59 NA Rattus norvegicus 81 Rn60_X_0752.1 ENSRNOG00000051243 ENSRNOT00000075937 1 1 1 60 X 74295775 74295794 GCTTCTTGCAGAGAAAGTGG 60 74295817 74295835 GTAGTCTATTTCCGCCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr20 ENSRNOG00000007333 ENSRNOT00000009709,ENSRNOT00000082595 1 2 2 135 6 135198919 135198937 TTCAACCACCTAACAGCCA 59 135199030 135213007 GTGACTTGTCTATTAGTCTTTCCTC 59 NA Rattus norvegicus 81 Wdr20 ENSRNOG00000007333 ENSRNOT00000009709,ENSRNOT00000082595 3 2 2 136 6 135198919 135198937 TTCAACCACCTAACAGCCA 59 135199032 135213008 CGTGACTTGTCTATTAGTCTTTCC 59 NA Rattus norvegicus 81 Olr463 ENSRNOG00000060217 ENSRNOT00000082357 2 1 1 60 3 73235690 73235711 ATCCTCTTTGCATTGTTTCTGG 60 73235732 73235750 TCATGCCCAAATTACCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lep ENSRNOG00000045797 ENSRNOT00000071926 2 1 1 70 4 56347130 56347150 CCAGGATCAATGACATTTCAC 57 56348747 56348765 AATGAAGTCCAAACCGGTG 58 NA DesignNoJunction Rattus norvegicus 81 LOC100158225 ENSRNOG00000007436 ENSRNOT00000047734 3 1 1 90 10 13589511 13589694 AACTCCAGATGGCTTCAGG 59 13589439 13589458 AGTGTACAGGCCTTTCTCAG 60 NA Rattus norvegicus 81 Cpa2 ENSRNOG00000028092 ENSRNOT00000029608 3 1 1 80 4 57864948 57864968 TACTCTGGATATCTTCCTGCT 58 57865009 57866095 TTTCTCCACATTCGATTGGT 58 NA Rattus norvegicus 81 Fam214b ENSRNOG00000009323 ENSRNOT00000012386 3 1 1 114 5 58479502 58479520 AAGCTCCCTTCGAACTCTC 59 58479286 58479426 CAGTGATTCCTCAAAGTTGCC 60 NA Rattus norvegicus 81 LOC500475 ENSRNOG00000024506 ENSRNOT00000034978 1 1 1 80 5 78392006 78392026 GCATCAGAATTTACCTTCCCT 58 78392068 78399335 AGACTTCCAAGACCTTCCA 58 NA Rattus norvegicus 81 Col11a2 ENSRNOG00000000463 ENSRNOT00000085547 1 1 1 80 20 3856399 3857094 CTTCCCGATGGAGAGTACTG 59 3857135 3857155 TGCTGTAAAGTTGCAGAACAC 60 NA Rattus norvegicus 81 Atp6v1f ENSRNOG00000007392 ENSRNOT00000009737 1 1 1 80 4 56744701 56744719 GCCACCCTAATTTCCTGGT 60 56744762 56747234 CCCTGTTTAGAAACTGCCTG 59 NA Rattus norvegicus 81 Ctsq ENSRNOG00000017946 ENSRNOT00000024208 2 1 1 80 17 3994999 3995018 CAACTAAAGGTCCCATTGCT 58 3995058 3995756 GCTCATGATAAACACCTTTCTG 58 NA Rattus norvegicus 81 Bap1 ENSRNOG00000019097 ENSRNOT00000025853 3 1 1 80 16 7340680 7340698 TTAAGTATGAGGCCAGGCT 58 7340741 7341014 TTACTCTAATCAGCTGCTGC 58 NA Rattus norvegicus 81 AABR07060886.1 ENSRNOG00000047464 ENSRNOT00000048493 3 1 1 61 4 98481762 98481780 GCAGGCTGATGATATTGCA 58 98481805 98542657 CGAATGTGGGAGGAGACTC 60 NA DesignNoJunction Rattus norvegicus 81 Tpgs2 ENSRNOG00000054118 ENSRNOT00000082963 1 1 1 80 18 17343794 17343812 GTGCGATATTTGAGCTGGA 58 17342091 17343750 GAGCTAATCCAGGTTTCCC 58 NA Rattus norvegicus 81 Tuba8 ENSRNOG00000048169 ENSRNOT00000074096 1 1 1 80 4 153784937 153785584 GAGCCTACAGTAGTAGACGAG 59 153785626 153785644 CTCCTTCCCTGTGATCAGC 60 NA Rattus norvegicus 81 Zfp688 ENSRNOG00000018379 ENSRNOT00000024858 2 1 1 87 1 198868467 198868485 ATGGAACAGGAGAGTGAGG 58 198866646 198868416 GAGTATCTCCTCTCGGAGC 59 NA Rattus norvegicus 81 LOC102553866 ENSRNOG00000031003 ENSRNOT00000052100 3 1 1 85 1 198838537 198838555 AGGAAGAGACCGAACTGTG 59 198837966 198838489 TTGTCTGCAATCTGAGTGGA 59 NA Rattus norvegicus 81 Pgrmc1 ENSRNOG00000012786 ENSRNOT00000079231 2 1 2 80 X 123209964 123212614 TCAGTTCACCTTCAAGTACCA 59 123212653 123212674 TCTTCATCATCCGAGTACACAG 60 NA Rattus norvegicus 81 Nop10 ENSRNOG00000005184 ENSRNOT00000006887 3 1 1 69 3 103747759 103747778 TATTACCTCAACGAGCAGGG 59 103748038 103748056 AAGTCTGTTGTCCCATGGG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07065651.3 ENSRNOG00000050912 ENSRNOT00000073304 2 1 1 83 6 138631739 138631761 CCTATACCTGCAAATGGATAGTC 59 138631635 138631698 TGCTGGTCACTAGTATCTGTG 59 NA Rattus norvegicus 81 Srd5a1 ENSRNOG00000017601 ENSRNOT00000023659 2 1 1 113 1 36329907 36336437 GTTTCCTGACAGGCTTTGC 60 36336512 36336532 CCCTGGGTATCTTGTATCCAG 60 NA Rattus norvegicus 81 Sqrdl ENSRNOG00000000172 ENSRNOT00000068129 3 1 2 113 3 114918609 114918627 ATGAGGTGCTGGTACTTGG 59 114918704 114920907 AGAAATGCCTCTCACTGGG 59 NA Rattus norvegicus 81 Sqrdl ENSRNOG00000000172 ENSRNOT00000089204 3 1 2 189 3 114918712 114920915 GAGGCATTTCTACCAGCCA 60 114921066 114921622 TATTGAAACCCTGTGGGTCTC 60 NA Rattus norvegicus 81 Tpsg1 ENSRNOG00000018701 ENSRNOT00000025236 3 1 1 84 10 14729226 14729804 TTCTCTGGGTCTGTGAACTC 59 14729850 14729869 TTACGGTGGAGAAATGAGGA 59 NA Rattus norvegicus 81 Olr1638 ENSRNOG00000011615 ENSRNOT00000015439 1 1 1 60 15 28446597 28446615 ACCCATGTATTCCCTCCTC 58 28446555 28446573 CACCGTAGAAGAGTAGCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klf16 ENSRNOG00000033694 ENSRNOT00000045421 2 1 1 85 7 12007208 12007226 AGTCTTCGCACCTCAAGTC 60 12014498 12014516 GAACTTCTTGTCACAGCCA 58 NA DesignNoJunction Rattus norvegicus 81 Klhdc10 ENSRNOG00000010267 ENSRNOT00000079059,ENSRNOT00000034429 1 2 2 80 4 57760339 57762692 ATATACGGACAGGCAATGG 57 57762734 57762754 GTCTGTGCTATAGATGTAGCC 58 NA Rattus norvegicus 81 Arhgap28 ENSRNOG00000017065 ENSRNOT00000067900,ENSRNOT00000090111 2 2 2 80 9 116094552 116094574 AATAGTACTACCCTATCCAACGG 59 116089433 116094513 AAGTATTGACACGGAACCAC 58 NA Rattus norvegicus 81 RGD1308751 ENSRNOG00000039954 ENSRNOT00000083451,ENSRNOT00000090013,ENSRNOT00000061398,ENSRNOT00000061391 1 4 4 80 17 4256429 4256725 ACAACACGAACGAAGAAGG 58 4256769 4256787 GATAGTCCTCGTTGTGCAG 58 NA Rattus norvegicus 81 Thpo ENSRNOG00000050172 ENSRNOT00000073743 2 1 1 84 11 82851597 82851847 CTAGGAACCCAGCTTCCTC 59 82851895 82851913 GAAGCAGTTGTTGCAAGCT 60 NA Rattus norvegicus 81 Tspan33 ENSRNOG00000007900 ENSRNOT00000010989 2 1 1 80 4 56997404 56999916 TTTCTCAGACAAGGCTCGG 60 56999959 56999978 TGCAGATCCAGATCATCTCG 60 NA Rattus norvegicus 81 Sel1l3 ENSRNOG00000004932 ENSRNOT00000006610 1 1 1 80 14 60198593 60200435 GAGGAATCTGACACTAGCTG 58 60200478 60200496 AGAGAACACCACAATGTCC 57 NA Rattus norvegicus 81 Gtpbp1 ENSRNOG00000014634 ENSRNOT00000049247 3 1 1 81 7 120940607 120940625 AAGATCCCTGTCTTGGTGC 60 120940670 120943034 ATATCGGGCACATCCTCTC 59 NA Rattus norvegicus 81 Myh8 ENSRNOG00000050042 ENSRNOT00000057260 1 1 1 80 10 53838046 53838145 GCAAGTGGATGATCTTGAAGG 59 53838187 53838205 TCCAGTTTCCTCTTGGCTC 59 NA Rattus norvegicus 81 Usp9x ENSRNOG00000003261 ENSRNOT00000080651,ENSRNOT00000048980 2 2 2 80 X 10590515 10590536 TGTGTCATACTATACCCATCGG 59 10588516 10590476 TGTATCCATTCAGCCATCCTC 60 NA Rattus norvegicus 81 Rpl39l ENSRNOG00000032300 ENSRNOT00000051564 3 1 1 76 10 5533466 5533484 CCACTGGCTTAGACTCACC 60 5529907 5529925 GAAGGTCTTGTGAGAAGCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Efr3a ENSRNOG00000025528 ENSRNOT00000045357 3 1 1 80 7 106597026 106597044 TGGAAGTGATGCACAACCT 60 106597084 106597609 CAGCCACATCTGGAATTATTCTG 60 NA Rattus norvegicus 81 Prtn3 ENSRNOG00000029814 ENSRNOT00000014687 3 1 1 81 7 12643863 12644419 GCATTTGCTTCGGAGACTC 59 12643800 12643818 CATTCGCGAATCACGAAGG 60 NA Rattus norvegicus 81 Spire2 ENSRNOG00000016920 ENSRNOT00000022823 3 1 1 80 19 56161400 56161777 ACTGAAGCAGGTCTCAGAG 59 56161819 56161839 ATTTCCTCCAGGATCTTCTCG 59 NA Rattus norvegicus 81 Eif5 ENSRNOG00000010218 ENSRNOT00000013695 3 1 1 80 6 136006749 136006768 TGTATCCACCAGTGAGACAC 59 136006808 136007099 TCATCTTCCTCTTCTTCCACAG 60 NA Rattus norvegicus 81 AABR07058410.1 ENSRNOG00000007795 ENSRNOT00000010262 1 1 1 60 7 114944353 114944373 TATGGATATGGTCAGCATGCA 60 114944312 114944331 TGCTGAGGATGTGAATGGG 60 NA DesignNoJunction Rattus norvegicus 81 Zfp251 ENSRNOG00000030308 ENSRNOT00000028184 1 1 1 110 7 117938520 117938538 TAAGCCAGAGCTGATCTCC 59 117912920 117938446 ATCTCAGAATCTGTCCCGC 59 NA Rattus norvegicus 81 LOC689766 ENSRNOG00000021411 ENSRNOT00000029081 1 1 1 80 13 95902003 95902022 CGGACAAGTGGCATAATGAG 59 95902062 95907632 CTAGTTTCTTATCCCAACCGAG 58 NA Rattus norvegicus 81 Taar7h ENSRNOG00000048072 ENSRNOT00000043436 2 1 1 60 1 22451414 22451435 CCTCATTGACTCCATCATTGAC 59 22451375 22451395 TTCATACACATAAGAGGGCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Irf2 ENSRNOG00000009824 ENSRNOT00000083632,ENSRNOT00000013118 2 2 2 81 16 48621782 48621801 CTTATCTGAGCGACCTTCCA 59 48610499 48621486 TGGTTCTTGCTTGATGTGC 59 NA Rattus norvegicus 81 Ttc19 ENSRNOG00000002977 ENSRNOT00000057777 1 1 1 80 10 48609447 48609466 TGCATTTCAACTCTAGAGGG 57 48609506 48623688 AGTATTGGCTCTTTCTTCTGAC 58 NA Rattus norvegicus 81 Ttc19 ENSRNOG00000002977 ENSRNOT00000057777 2 1 1 80 10 48623809 48625144 GAAAGACACCCACAGACCA 60 48625187 48625206 GTAGGCATCATCAAAGTGGC 59 NA Rattus norvegicus 81 Olr35 ENSRNOG00000030788 ENSRNOT00000051450,ENSRNOT00000024311 2 2 3 84 1 164707083 164717782 GATCTGCCTCTGGACTTCC 60 164717828 164717848 TCAGGGTGTAGATGATAGGGT 60 NA Rattus norvegicus 81 Nalcn ENSRNOG00000004752 ENSRNOT00000089695,ENSRNOT00000057404,ENSRNOT00000006624 2 3 3 80 15 109970334 110020814 GCTTTAATGAGATAGGCACGA 58 109970274 109970294 CTCTGTACATGAGGAATACCC 57 NA Rattus norvegicus 81 LOC100909900 ENSRNOG00000061753 ENSRNOT00000086709 1 1 1 60 3 74766582 74766603 TGTCATCATGTCACAGAAAGTC 59 74766543 74766561 GGCACTGAACAGATAGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Auts2l ENSRNOG00000034287 ENSRNOT00000044800 2 1 1 81 12 27629403 27629421 AGTGAAAGCGCTAGTGGAG 60 27629465 27647016 TGGAAGGAGCTGAACTATCG 59 NA Rattus norvegicus 81 Nat2 ENSRNOG00000049498 ENSRNOT00000044198 1 1 1 80 16 23962125 23984534 AATTGACTGGAAACCATGGAC 59 23962065 23962084 TTCCAAGTCCAGTTTGTTCC 58 NA InUTR Rattus norvegicus 81 Vom1r69 ENSRNOG00000058549 ENSRNOT00000088453 2 1 1 60 4 87455269 87455289 CTATCTGTATCACCTGCCTCC 60 87455309 87455329 GAGGTACTGGGACTTATTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpam ENSRNOG00000015124 ENSRNOT00000083215,ENSRNOT00000047903,ENSRNOT00000092170 1 3 3 80 1 275866775 275866795 CTCTTCAACAGCTTCTTCTGG 59 275866166 275866734 CAGATTCGTCTCAGTTGCAG 59 NA Rattus norvegicus 81 Olr1076 ENSRNOG00000039448 ENSRNOT00000060455 2 1 1 60 7 13424745 13424763 TCAGATCGTACACCATGCC 60 13424703 13424723 TGCGATGTAAATCACCATGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1394 ENSRNOG00000047636 ENSRNOT00000043058 3 1 1 60 10 34673577 34673597 CAACCCTCTGATCTATACCCT 58 34673619 34673637 TAGCACCTTCCATAGAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC094516.1 ENSRNOG00000057064 ENSRNOT00000082938 2 1 1 60 15 28128239 28128259 TAACGAGATGATGAAGAGCAG 58 28128280 28128299 GAAGGTGTTCATGGACTTGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhb19 ENSRNOG00000039469 ENSRNOT00000060484 3 1 1 60 18 30575396 30575416 TTGGCTCACTGATTATCACTG 58 30575436 30575456 AGTTCACCATTAGTTCCCGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trpm5 ENSRNOG00000020484 ENSRNOT00000040850 3 1 1 80 1 216261100 216263460 GAAATTGATGAGGCCCGTG 59 216261038 216261057 GGCATAGAGATTAGGGCAGG 60 NA Rattus norvegicus 81 Robo2 ENSRNOG00000029598 ENSRNOT00000090497,ENSRNOT00000065748 2 2 3 80 11 11147226 11147246 TTCTGGGTAGAGATCCAAGAG 58 11142084 11147185 TGCCAGTATCAGAAATCCGT 59 NA Rattus norvegicus 81 LOC103692768 ENSRNOG00000056595 ENSRNOT00000084203 1 1 1 60 7 6803090 6803110 TTACATCTGCTTGTATCCCTC 57 6803050 6803068 GTGATTGACCTGTCTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103692768 ENSRNOG00000056595 ENSRNOT00000084203 2 1 1 60 7 6803295 6803315 AAGAACAACACGATAACCACC 59 6803255 6803275 TCTGAAGTTGAGGATCATCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpat2 ENSRNOG00000013906 ENSRNOT00000018677 2 1 1 80 3 119998388 119998406 TGTACTGTTCTCCCAAGGG 59 119998450 119998716 AGTAGAGCTCTGAGAGCAG 58 NA Rattus norvegicus 81 Bzrap1 ENSRNOG00000007957 ENSRNOT00000010755 3 1 1 80 10 75059342 75059361 AGCGAAAGAAATGTGAGAGC 59 75059404 75059648 CCCTCAGCTGTAGTTCCAG 60 NA Rattus norvegicus 81 AABR07065684.1 ENSRNOG00000056043 ENSRNOT00000071714 2 1 2 74 6 139293172 139293300 AAAGGTGTCCAGTGTGAGG 60 139293338 139293356 GAGTTTCAGGGACCTTCCA 59 NA DesignNoJunction Rattus norvegicus 81 Gba3 ENSRNOG00000024634 ENSRNOT00000029104 1 1 2 80 14 64391596 64475195 CTATTCAAAGTCTACTGTGCGT 59 64391537 64391555 GAAGAGACCAAACCGTCTG 58 NA Rattus norvegicus 81 AC109901.2 ENSRNOG00000059447 ENSRNOT00000074614 1 1 1 80 11 85618750 85618890 CACTTAACAGGGTCATGTGC 59 85618929 85618951 CAGTTTGACTGTGCTTTCTAGAG 60 NA Rattus norvegicus 81 Ythdc2 ENSRNOG00000039241 ENSRNOT00000060098 1 1 1 80 1 182116424 182116443 TTTACGAGCCAAGTAGAGCA 59 182116168 182116381 ATCTAAAGCCATCCAGCCA 59 NA Rattus norvegicus 81 Slc39a4 ENSRNOG00000014314 ENSRNOT00000040422,ENSRNOT00000071522 3 2 2 81 7 117678345 117678363 GCCCTCAGTACTTTGTGGA 59 117678182 117678300 AAATCCTCCAATTCGGGCA 60 NA Rattus norvegicus 81 Wfikkn1 ENSRNOG00000021578 ENSRNOT00000060156 2 1 1 167 10 15245693 15245711 TCATCCATCTGACCTCGGA 60 15244874 15244892 CATTGGTGCAGCACTTCTC 60 NA DesignNoJunction Rattus norvegicus 81 Olr1442 ENSRNOG00000031246 ENSRNOT00000042880 1 1 1 60 10 44528033 44528052 AAGACACGTCCCAATATGAG 57 44528073 44528093 GGTAACAACAGAATGACAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdc6 ENSRNOG00000027787 ENSRNOT00000081424,ENSRNOT00000038228 3 2 2 80 10 86831185 86831203 TCTTGGTTTGCTCTTTGCT 58 86831244 86832036 TGTAGGCTTCATATAACTTCCC 58 NA Rattus norvegicus 81 Ust ENSRNOG00000016381 ENSRNOT00000022003 3 1 1 81 1 2375367 2375386 ATGTGCTGCTTCTACTGGAG 60 2334221 2375323 TTCCTATGCTCTGGGTCCT 60 NA Rattus norvegicus 81 Phlda3 ENSRNOG00000009068 ENSRNOT00000011999 3 1 1 112 13 52589581 52589599 CAGAGTCTTGGAACTGGGA 59 52589675 52591355 AAGTGGACAGAGAAGCTGG 59 NA InUTR Rattus norvegicus 81 Tango2 ENSRNOG00000030245 ENSRNOT00000083049,ENSRNOT00000046594 2 2 2 81 11 86839223 86839246 GGAGTATATTCAGCCAATACTGAG 59 86839286 86839838 GATGGTGTTGGTTCTGGTG 59 NA Rattus norvegicus 81 Tango2 ENSRNOG00000030245 ENSRNOT00000083049,ENSRNOT00000046594 3 2 2 81 11 86839224 86839247 GAGTATATTCAGCCAATACTGAGC 59 86839287 86839839 TGATGGTGTTGGTTCTGGT 59 NA Rattus norvegicus 81 Atg7 ENSRNOG00000007486 ENSRNOT00000067532 3 1 1 80 4 146603838 146603857 CATAAAGTCAGGTGCTGCTC 59 146603900 146607744 TACTTCTTTAGGTCCGCGA 58 NA Rattus norvegicus 81 Abcb10 ENSRNOG00000017993 ENSRNOT00000024232 3 1 1 80 19 56760298 56761457 CAGTCTTCAGGTCAGAGCA 59 56760236 56760254 AAAGAAGGCAACCTCTTGC 59 NA Rattus norvegicus 81 Fndc3b ENSRNOG00000024089 ENSRNOT00000034096 1 1 1 80 2 113133469 113143694 CGAAACTACATACCGGATCAG 58 113133409 113133430 GTCTTTGCTTTGATGAACTGAC 59 NA Rattus norvegicus 81 Polr2d ENSRNOG00000016231 ENSRNOT00000021738 2 1 1 82 18 24570882 24572240 TCCCAAAGAGTTCGAAACAG 58 24572285 24572303 TCTCATTCTGCTGCTTTCG 58 NA Rattus norvegicus 81 Acsl1 ENSRNOG00000010633 ENSRNOT00000014235,ENSRNOT00000089501 1 2 2 80 16 48940073 48940092 GTGGAGATCCTACCTTCCTG 59 48939920 48940033 ATTGATATCCTTGTTCCTGCAC 59 NA Rattus norvegicus 81 LOC103690024 ENSRNOG00000049203 ENSRNOT00000071625,ENSRNOT00000073341 2 2 2 80 4 157007883 157008297 ACTGAAGATGAGTTGGTGG 57 157007821 157007839 CATCTTGAAGGTCTGAGGG 57 NA Rattus norvegicus 81 Stambp ENSRNOG00000012227 ENSRNOT00000014708,ENSRNOT00000086968 1 2 2 80 4 115265432 115271511 ACAACAAGTACATCACGCTG 59 115265371 115265391 CTTTCTTCTCGGGAATGATGG 59 NA Rattus norvegicus 81 Rn60_10_0698.6 ENSRNOG00000030291 ENSRNOT00000040771 1 1 1 97 10 70100735 70100753 GACCAAAGGTGGCATTACG 59 70101008 70101026 TTCCTTTCCTGCCTGATCC 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_10_0698.6 ENSRNOG00000030291 ENSRNOT00000040771 3 1 1 105 10 70100727 70100745 GACACTGTGACCAAAGGTG 59 70101008 70101026 TTCCTTTCCTGCCTGATCC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100910885 ENSRNOG00000047782 ENSRNOT00000092095 2 1 2 81 7 118895554 118906306 GAAGATTCCTGAGGAGAAATGC 59 118906348 118906366 GAGCTGCAGGTTCTCTAGG 60 NA Rattus norvegicus 81 Tbccd1 ENSRNOG00000026458 ENSRNOT00000088503,ENSRNOT00000038826 3 2 2 80 11 81785802 81789549 GTTTGACAAAGGAGCAGAGG 59 81789589 81789610 GATGTCCTGTACTAACCAACCA 60 NA Rattus norvegicus 81 Atp6v0e1 ENSRNOG00000003269 ENSRNOT00000004653 2 1 2 96 10 16792787 16792805 CTTTGATCGTGATGAGCGT 58 16786791 16792729 AACATGGTGATGATAACTCCC 58 NA Rattus norvegicus 81 Polr3c ENSRNOG00000033560 ENSRNOT00000028815 1 1 1 80 2 198843623 198843641 ACAATGCTCCGAATGAGTG 58 198841792 198843581 TCTGAAGATCTCATTGGAGGA 58 NA Rattus norvegicus 81 Pde4b ENSRNOG00000005905 ENSRNOT00000008278,ENSRNOT00000068158,ENSRNOT00000007738 1 3 3 80 5 122132555 122132575 GAACATTGCGACATCTTTCAG 58 122132615 122132726 TGCTAACACCATGTCAATCAC 59 NA Rattus norvegicus 81 Ccnd3 ENSRNOG00000050258 ENSRNOT00000074217 1 1 1 103 9 15406465 15406918 TGTGCCACAGATTACACCT 59 15406380 15406398 TCTGCAGACATAGAGCAGG 59 NA Rattus norvegicus 81 LOC100361061 ENSRNOG00000025179 ENSRNOT00000038531 2 1 1 106 20 43143075 43143096 CATGAGGTCGGGAAGTACC 60 43143165 43143184 TTCCTTACCCTCAAGAGCTG 59 NA Rattus norvegicus 81 Ears2 ENSRNOG00000018925 ENSRNOT00000025584 3 1 1 140 1 253298333 253298355 CTCAAGTTTGTAATGCTGGC 58 253298212 253298230 CAGGTGTAAGAAGCCTGTG 58 NA Rattus norvegicus 81 Lemd3 ENSRNOG00000024027 ENSRNOT00000039532 1 1 1 80 7 63001186 63002404 GTGCTTAGGTGTAGTCCTG 57 63001124 63001142 TGCCTTGTCTCTTCTTCCT 58 NA Rattus norvegicus 81 Rev3l ENSRNOG00000000593 ENSRNOT00000057227,ENSRNOT00000077936 2 2 2 80 20 44882612 44882630 CTCCTGAAATGCTTCCCTG 58 44882672 44890506 GTTTAGTGTTACCTTTGCTCC 57 NA Rattus norvegicus 81 Cirbp ENSRNOG00000015999 ENSRNOT00000021648 2 1 1 103 7 12402889 12402994 CAGATCTCGGAAGTGGTGG 60 12402804 12402822 ATCATGGCATCCTTAGCGT 59 NA Rattus norvegicus 81 Park7 ENSRNOG00000018289 ENSRNOT00000091206,ENSRNOT00000024711,ENSRNOT00000087402 3 3 3 80 5 167997446 167998562 CGAGCTGGGATTAAAGTCAC 59 167997385 167997405 CGGACAAATCACTACATCACG 60 NA Rattus norvegicus 81 Usp43 ENSRNOG00000003785 ENSRNOT00000065383 2 1 1 80 10 54445663 54445682 AACAGAGCAACACCTTTGAC 59 54444140 54445623 AAGTGACACTCAAGAATCTCGT 60 NA Rattus norvegicus 81 Itpa ENSRNOG00000021233 ENSRNOT00000028838 2 1 1 81 3 123218864 123220643 TGAGCAAACGTATGCAGAG 58 123220687 123220706 CTCTTGGAGCTTGAACAGAG 58 NA Rattus norvegicus 81 Rhobtb3 ENSRNOG00000012414 ENSRNOT00000016838 2 1 1 80 2 2635193 2635211 GCTGCTTCATTTCATTGCC 58 2630362 2635151 CTTCGTTCTTCCACTGAAAGG 59 NA Rattus norvegicus 81 Olr880 ENSRNOG00000042424 ENSRNOT00000067319 2 1 1 60 7 3751315 3751336 GCCATCAATAAGGTTGTATCTG 57 3751276 3751294 TGAATGGGTTGAGCAAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stk11 ENSRNOG00000014287 ENSRNOT00000060683 1 1 1 80 7 12445749 12445768 CAGAGATTGCCAATGGACTG 59 12445406 12445708 TGATGTTGTAGAGTGTGACCC 60 NA Rattus norvegicus 81 Stk11 ENSRNOG00000014287 ENSRNOT00000060683 3 1 1 80 7 12447284 12456412 AACGTCAAGAAGGAGATCCA 59 12447223 12447242 CTCATTGTACAGCACATCCA 58 NA Rattus norvegicus 81 Rpl7l1 ENSRNOG00000016269 ENSRNOT00000021803 1 1 1 80 9 16510616 16511399 CGCATGGAAAGGATTCAAGG 60 16511440 16511460 GCCACTGAACAACTTCTTCAG 60 NA Rattus norvegicus 81 Elane ENSRNOG00000033685 ENSRNOT00000014981 1 1 1 80 7 12639506 12639637 AATGGCCGAAATTTCCAGTC 59 12639445 12639463 GAAGATTTGTCGAGTGGGC 59 NA Rattus norvegicus 81 Ppan ENSRNOG00000020608 ENSRNOT00000027973 1 1 1 80 8 21906887 21907097 TATACTTGAAGCTGATGCGAC 58 21907229 21907248 CAACATCCCGTATCAGTGTG 59 NA Rattus norvegicus 81 Mir429 ENSRNOG00000035595 ENSRNOT00000053718 3 1 1 60 5 173488385 173488405 TGGATGTCTTACCAGACATGG 60 173488345 173488368 GCATTACCAGACAGTATTAGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r80 ENSRNOG00000055298 ENSRNOT00000086274 1 1 1 80 1 65115390 65196407 AAGTACACAGATGCCAACCT 59 65196450 65196468 GCTGGCATTCCATTCTTCC 59 NA Rattus norvegicus 81 Kcnab3 ENSRNOG00000008480 ENSRNOT00000011523 1 1 1 80 10 55929475 55929494 TCCTGACAGTAGCCTATGAG 58 55929537 55930837 GGGTTCTTTCAGCCTTTCC 59 NA Rattus norvegicus 81 Hip1r ENSRNOG00000001091 ENSRNOT00000034264 3 1 1 81 12 38031182 38031388 GAAGGATGACAGGGACCTC 59 38031119 38031141 CATCTTAATCTTCTCCAGCTCAG 59 NA Rattus norvegicus 81 Rac3 ENSRNOG00000048172 ENSRNOT00000073886 2 1 1 96 10 109905887 109905905 GGACACAATTGAACGGCTG 60 109905964 109906121 CAGGTACTTGACAGAACCGA 60 NA Rattus norvegicus 81 Elavl4 ENSRNOG00000023601 ENSRNOT00000035252 2 1 1 80 5 130009237 130010723 TTGATCAAGTCACAGGAGTC 57 130009176 130009194 CTTTGATGGCTTCTTCTGC 57 NA Rattus norvegicus 81 RGD1564102 ENSRNOG00000047758 ENSRNOT00000042604 1 1 1 90 14 525009 525755 GAGTCAAGTCCTAGGGTGC 60 525804 525827 GGAGAAGGAATTCAACTCATTCTG 60 NA Rattus norvegicus 81 Tcp1 ENSRNOG00000014160 ENSRNOT00000019531,ENSRNOT00000076684 2 2 2 80 1 48029792 48029813 AGAAGTCAGATAGAAAGCATGC 59 48029427 48029752 TATTCTCTTGAGCATGCCCT 59 NA Rattus norvegicus 81 Nxpe1 ENSRNOG00000027730 ENSRNOT00000072518 1 1 2 81 8 52751892 52751912 GGCTGCTAATATTCACATCGT 59 52751955 52753021 GTGGTCCATAGCTTTGCAG 59 NA Rattus norvegicus 81 Pigh ENSRNOG00000010914 ENSRNOT00000014775 2 1 1 80 6 102266272 102268095 GGCTATTTACATGCAGAAGGT 59 102266212 102266232 ACTTGGGATATCTCATGTGGT 59 NA Rattus norvegicus 81 Tysnd1 ENSRNOG00000024839 ENSRNOT00000036719 1 1 1 80 20 31314233 31315653 AGCTACACCCAGGAATGTG 59 31315696 31315715 ACCACCGCTATGTCATATGG 60 NA Rattus norvegicus 81 Bcl9 ENSRNOG00000017516 ENSRNOT00000023548 2 1 1 80 2 199343810 199344555 ACTGAGATGGCAAATAAGGCT 60 199343750 199343771 GATGTTCTGGATGTGGAAAGAG 59 NA Rattus norvegicus 81 Rab24 ENSRNOG00000016539 ENSRNOT00000022221,ENSRNOT00000077031 1 2 3 80 17 9838226 9838351 ATTGTCTGTTATGACCTCACC 58 9838393 9838411 CTCTTCTAAACTGCGGAGC 58 NA Rattus norvegicus 81 LOC100910454 ENSRNOG00000013340 ENSRNOT00000017915 1 1 1 93 9 113728186 113728204 CTAGAAACCGTGAACCAGC 59 113728261 113729234 TGCACATGTGCTCTTTGTC 59 NA Rattus norvegicus 81 LOC100910454 ENSRNOG00000013340 ENSRNOT00000017915 2 1 1 96 9 113728183 113728203 TTTCTAGAAACCGTGAACCAG 58 113728261 113729234 TGCACATGTGCTCTTTGTC 59 NA Rattus norvegicus 81 Amhr2 ENSRNOG00000014850 ENSRNOT00000020103,ENSRNOT00000091378 1 2 2 80 7 144058467 144058485 TTCCTTGAGGATGGCTCTG 59 144058529 144058663 GGTTTGTACTGGCCATCCT 60 NA Rattus norvegicus 81 Themis ENSRNOG00000014979 ENSRNOT00000020102 3 1 1 80 1 17337438 17337457 GTGAGGGTGATATTGGAGGT 59 17299904 17337397 CCATGACCTTAAAGAGACCTG 58 NA Rattus norvegicus 81 Gp9 ENSRNOG00000010015 ENSRNOT00000013282 3 1 1 111 4 119680604 119680622 CTCCTGTCAAGCAACACTG 59 119681462 119681481 GGTAGGTATCCAGCAGATGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ankmy2 ENSRNOG00000005623 ENSRNOT00000064822,ENSRNOT00000091488 1 2 2 80 6 55659828 55665607 CACTGTCTGGTAATAAAGACATCAC 60 55665645 55665663 TTCTTCCCACCGAGTTCAC 60 NA Rattus norvegicus 81 Hmgcs2 ENSRNOG00000019120 ENSRNOT00000026121 3 1 1 81 2 200476102 200477269 TTACCACAAGGTGAACTTCTC 58 200477312 200477330 CTCATCCACTCGTTCAAGG 58 NA Rattus norvegicus 81 Ulk4 ENSRNOG00000019271 ENSRNOT00000074423 3 1 1 80 8 129908748 129910082 CTCCTTTATCCAAGATGACAAGC 60 129908690 129908710 AGTCTGTGTAGATCAGCTCTC 59 NA Rattus norvegicus 81 Dcaf10 ENSRNOG00000011655 ENSRNOT00000016384 1 1 1 80 5 60931002 60931023 TAAGTCTTTAGAAGTAGGCAGC 58 60931061 60932632 CTTGATGAAGTGGTCAAATCTG 58 NA Rattus norvegicus 81 Spidr ENSRNOG00000037851 ENSRNOT00000089517,ENSRNOT00000057502 1 2 2 80 11 89034700 89034719 TGAAGGAGACACCATTTCCA 59 89034552 89034659 CCATGTTCATTAGTCTGGAGG 58 NA Rattus norvegicus 81 Oscar ENSRNOG00000055716 ENSRNOT00000090790 1 1 1 80 1 64186680 64186929 TGCTGGTAACAGATCAGCT 59 64186973 64186991 GGCTTACAGTGGTTTCTGG 59 NA Rattus norvegicus 81 Mreg ENSRNOG00000015774 ENSRNOT00000085619,ENSRNOT00000021152 3 2 2 81 9 79523315 79523334 ACAGAGGCAGATGATGACAG 60 79494502 79523271 TTTGCCACTCCTCTGAGTC 59 NA Rattus norvegicus 81 Parp10 ENSRNOG00000004361 ENSRNOT00000006376 2 1 1 80 7 117298299 117298537 ATGAGACTGGAGGAAGTCC 58 117298237 117298256 CTCTTCCTCCATCTCCAGAG 59 NA Rattus norvegicus 81 Olr1029 ENSRNOG00000047357 ENSRNOT00000048223 1 1 1 60 7 7753187 7753208 TCTTAAACCATCAGTCAAGCAG 59 7753148 7753168 GGTATTGAGCACAGAAATTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360120 ENSRNOG00000047309 ENSRNOT00000075273 3 1 1 138 4 167219794 167219812 TACGGTGTCTTCTGCAAGG 60 167219911 167222134 TTCTTATGAATCTCTGCAAGCG 59 NA Rattus norvegicus 81 Stip1 ENSRNOG00000021164 ENSRNOT00000028743 1 1 1 80 1 222288642 222288660 AAGGAGACTACCAGAAGGC 58 222287676 222288599 TTCTTGAATAACCCTTGCCC 58 NA Rattus norvegicus 81 Cep83 ENSRNOG00000007859 ENSRNOT00000034639 2 1 1 80 7 35782926 35792923 TGAAATACAAGTCAGAGGTTGC 59 35792963 35792982 TTGTGGGATCAACACTAAGC 58 NA Rattus norvegicus 81 Glyatl2 ENSRNOG00000012387 ENSRNOT00000016593 3 1 1 80 1 229547292 229548598 GCAGATCCAAAGTTCACAGG 59 229548641 229548659 TTATGCTTGACCTTGCCCA 60 NA Rattus norvegicus 81 Shq1 ENSRNOG00000005433 ENSRNOT00000089177,ENSRNOT00000057758 3 2 2 80 4 133120718 133121615 TGGAAGAAATAGGTGCTTCC 58 133120657 133120675 TCTGCTCAATTTCCCAGTC 58 NA Rattus norvegicus 81 Hbe2 ENSRNOG00000030784 ENSRNOT00000048484 3 1 1 80 1 169001712 169001733 CTGCTATCATAAGCATATGGGA 58 169001322 169001674 GATATACAATGAGGAGCCTTCC 58 NA Rattus norvegicus 81 AABR07011700.1 ENSRNOG00000057979 ENSRNOT00000071111 1 1 1 60 2 166475564 166475582 AACACATGGAAACAACCCT 58 166475604 166475624 GTATCTACAGCTCCTTGTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102550456 ENSRNOG00000024616 ENSRNOT00000082910 1 1 3 81 12 21749679 21756469 TGATGACGACAGTGGTTCC 60 21745538 21745558 TAGGTGTTTCCAGAACAGGAC 60 NA Rattus norvegicus 81 Nrp1 ENSRNOG00000010744 ENSRNOT00000014492,ENSRNOT00000080465 2 2 2 80 19 61441968 61449961 AGATAACAGATTACCCTTGCTC 58 61450001 61450020 GGTTGGATGCTGTAATCTGG 59 NA Rattus norvegicus 81 Rps23 ENSRNOG00000016580 ENSRNOT00000022348 3 1 1 80 2 19823269 19823691 CAAGATGGGTAAGTGTCGTG 59 19823732 19823752 TGTTTATCATGCCACTTCTGG 59 NA InUTR Rattus norvegicus 81 Mrps28 ENSRNOG00000032630 ENSRNOT00000046368 1 1 2 60 2 95079019 95079037 AAAGTGAACATGAACGCCA 58 95080565 95080583 TTTCAGGAAGAACCCACAC 58 NA DesignNoJunction Rattus norvegicus 81 Chd1 ENSRNOG00000014434 ENSRNOT00000083968,ENSRNOT00000019358 3 2 2 80 1 57719640 57719662 GGACATGAGGGTTTAGAATTGAG 59 57719699 57720759 ACTATTTCCTTTGCACCAAGAG 59 NA Rattus norvegicus 81 Hyal3 ENSRNOG00000016093 ENSRNOT00000021590 2 1 1 80 8 116341750 116341874 TGTTTCTAGCTCTGAGGAAGAG 59 116341914 116341933 GTCACGTTGATCACATAGGG 59 NA Rattus norvegicus 81 LOC100912538 ENSRNOG00000050877 ENSRNOT00000074157 2 1 1 81 2 9683773 9685322 GTTTAGCTCTGAGAGGTGAG 58 9685364 9685384 TCTTGCTTCTGTTCTTCAGAG 58 NA Rattus norvegicus 81 Slc17a5 ENSRNOG00000009330 ENSRNOT00000012474 3 1 1 80 8 85903554 85906808 AGGTTCAATGTTCAAGAGAACG 59 85903495 85903514 TTGACCACAGACAATCATGC 59 NA Rattus norvegicus 81 LOC100909620 ENSRNOG00000049821 ENSRNOT00000075282 1 1 1 80 1 81556177 81556197 AAGTCCAACCTTGTTCTATGC 59 81555838 81556135 GATACTGAGGCTACCTCCC 58 NA Rattus norvegicus 81 Lysmd3 ENSRNOG00000016298 ENSRNOT00000021818 2 1 1 96 2 9529916 9529935 AGACAGACTTGATGACATCG 58 9529994 9531649 ATCTGCTACCGTACAACAG 57 NA Rattus norvegicus 81 B3galt2 ENSRNOG00000003251 ENSRNOT00000004342 3 1 1 150 13 60436533 60441102 AAAGAAAGAATGACGTCGAGG 59 60441214 60441232 TCTTCTCCTCCACTGAAGC 59 NA InUTR Rattus norvegicus 81 Ccl21 ENSRNOG00000034290 ENSRNOT00000023951 2 1 1 60 5 58198206 58198227 TAAGTCTGGGAAGAAAGGAAGG 60 58198084 58198186 GGAGTCTGTCTGTTCAGTCC 60 NA DesignNoJunction Rattus norvegicus 81 Pmp22 ENSRNOG00000003338 ENSRNOT00000081415,ENSRNOT00000041606 3 2 2 83 10 49561859 49567298 AAATCCTTGCTGGTCTGTG 58 49567344 49567363 AGTAGTCGTTGTTGACATGC 59 NA Rattus norvegicus 81 Ppp1r3c ENSRNOG00000018494 ENSRNOT00000024941 2 1 1 60 1 255374393 255374411 ATTTGCTTGGCACATTCAC 58 255374351 255374370 GCTGAAGACCATTGTAAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir187 ENSRNOG00000035521 ENSRNOT00000053644 1 1 1 60 18 16390569 16390588 ATCCTCAGGCTACAACACAG 60 16390528 16390546 CTGCAACACAAGACACGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102550816 ENSRNOG00000040058 ENSRNOT00000061599 3 1 1 60 11 29008341 29008359 CTATGGCTGTGGCTATGGA 59 29008382 29008401 CCTTCTACAACATAGTGGGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 G6b ENSRNOG00000026936 ENSRNOT00000037191 3 1 1 144 20 5056001 5056019 GGCTAGAGCTGCTACTGAG 59 5055722 5055893 GAATACTCGGATCCGTGGG 60 NA Rattus norvegicus 81 Gykl1 ENSRNOG00000029096 ENSRNOT00000051142 1 1 1 60 18 47660362 47660380 ACAGTGATTGTGGAATCCC 57 47660404 47660422 TTGTTTGCGGTCATTCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gykl1 ENSRNOG00000029096 ENSRNOT00000051142 3 1 1 60 18 47660603 47660621 TGTCGAGGAAAGTGAAGGG 59 47660644 47660663 GCCCATTGACTTCATCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tp53 ENSRNOG00000010756 ENSRNOT00000046490,ENSRNOT00000085115,ENSRNOT00000080584,ENSRNOT00000091216,ENSRNOT00000083458 1 5 5 80 10 56194213 56194328 ATGATATTCTGCCCACCAC 57 56194372 56194390 ACAACTCTGCAACATCCTG 58 NA Rattus norvegicus 81 Dll3 ENSRNOG00000019338 ENSRNOT00000076170 2 1 2 60 1 85491022 85491040 CTCCAAGAAGTCCCTTGTC 58 85491063 85491082 GACAGGCACATTCAAAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360499 ENSRNOG00000039562 ENSRNOT00000060645 2 1 1 60 11 47090267 47090286 CCATGAAGAAGGTGGTTCAG 59 47090308 47090327 GAAACCTTCACACGGTTGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdk6 ENSRNOG00000009258 ENSRNOT00000012597 3 1 1 80 4 27786303 27787618 AAGACCTCCTTCTGAAATGC 58 27786242 27786260 GGAAGTACGGGTGATTCAG 58 NA Rattus norvegicus 81 L3mbtl2 ENSRNOG00000024743 ENSRNOT00000034998 1 1 1 80 7 122912128 122912469 TTCAAGAAGGTCCGAGCTG 60 122912513 122912531 ATTCAGAGGGTCAATGGCC 60 NA Rattus norvegicus 81 Tecpr2 ENSRNOG00000021904 ENSRNOT00000030864 2 1 1 80 6 135401965 135402478 GTTTCACAGTGACCTCATCAG 59 135402520 135402538 TGAACGTCTTTGTCAGTCG 58 NA Rattus norvegicus 81 Tecpr2 ENSRNOG00000021904 ENSRNOT00000030864 3 1 1 81 6 135379114 135379133 GGGTTAACAAGAGTGGTGTG 59 135379173 135380636 CAGTAAGTTCCTATGAGACTTCC 58 NA Rattus norvegicus 81 Rn60_10_0700.4 ENSRNOG00000051029 ENSRNOT00000076584 1 1 1 60 10 70331057 70331076 TCTGAATAGGTTTGACACGG 58 70331098 70331117 TAATCTCCATTCCAGCTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cetn3 ENSRNOG00000048563 ENSRNOT00000089209,ENSRNOT00000072155 3 2 2 81 2 12102691 12104240 TTTAGCTCTGAGAGGTGAGC 59 12104281 12104302 TTCTTGCTTCTGTTCTTCAGAG 59 NA Rattus norvegicus 81 LOC499715 ENSRNOG00000033088 ENSRNOT00000043369 1 1 1 80 2 242801861 242801880 ACCCAGATGTTCAGGAAGTC 60 242798522 242801818 CGATGATGCTGAAGTCCAC 59 NA Rattus norvegicus 81 Rnd2 ENSRNOG00000020698 ENSRNOT00000028089 3 1 1 80 10 89378192 89378210 CAGATTCTGATGCTGTGCT 58 89378254 89379024 CTCCTTGCCACTTCTTGAG 58 NA Rattus norvegicus 81 Nop16 ENSRNOG00000017284 ENSRNOT00000023320 3 1 1 80 17 10560166 10561664 TCCGTAAGAGGAAGGTAAAGG 59 10561706 10561724 TAACCACATAGGGCTTCCG 59 NA Rattus norvegicus 81 Atpaf1 ENSRNOG00000010169 ENSRNOT00000087197,ENSRNOT00000013533 3 2 2 80 5 134656581 134663844 CACATTTCTGAACGTTGCC 58 134663886 134663906 TAGATCTCCTTCCGATCAGTG 59 NA Rattus norvegicus 81 LOC100909494 ENSRNOG00000012973 ENSRNOT00000066242 2 1 1 80 10 87708417 87708436 GTTCTAGCTGTTGTGGATCC 58 87708479 87708554 TAGATCCACAGCAGGAAGG 59 NA Rattus norvegicus 81 Zfp367 ENSRNOG00000027234 ENSRNOT00000036287 2 1 1 83 17 1665501 1671450 ACCTCAAGGATGGAATCCG 59 1665436 1665455 TGCTAGATGAATGCTCTCCT 58 NA Rattus norvegicus 81 LOC689599 ENSRNOG00000012115 ENSRNOT00000016155 3 1 1 80 9 114784636 114784655 GTCAGAGCAGAAGTGAAGGA 60 114754970 114784593 CAGTTGGAAGTTCCCTTCG 59 NA Rattus norvegicus 81 Itih4 ENSRNOG00000017381 ENSRNOT00000061294,ENSRNOT00000048344 2 2 2 80 16 6978753 6978774 AGAACAATTCCAAGTTGCTGAG 60 6979048 6979313 AAATGCCGTTGAACTGCTG 60 NA Rattus norvegicus 81 Dnaja3 ENSRNOG00000003855 ENSRNOT00000085230,ENSRNOT00000081596,ENSRNOT00000005479 2 3 3 80 10 11081974 11081992 ACCAGATACTGGGAGTACC 58 11080335 11081933 GATGATATTTCTTGGCAAGCTG 58 NA Rattus norvegicus 81 Ifitm6 ENSRNOG00000036645 ENSRNOT00000054875 3 1 1 80 1 213817434 213818076 CTACTCTGTGAAGTCCAGGG 59 213817373 213817392 AGTTTCTTGGCAGTTGAAGC 59 NA Rattus norvegicus 81 Mt2A ENSRNOG00000043098 ENSRNOT00000067391 2 1 1 100 19 11308716 11308735 GCTCCTAGAACTCTACAGCG 60 11308372 11308653 CAGGAGCAGGATCCATCTG 60 NA InUTR Rattus norvegicus 81 Agbl2 ENSRNOG00000008467 ENSRNOT00000011467 3 1 1 80 3 79628983 79629004 ACAACACTCTATTGTTCGAGTC 59 79629040 79631698 GTTCGTACTCATAAATGCCTACTC 60 NA Rattus norvegicus 81 AABR07031691.1 ENSRNOG00000060281 ENSRNOT00000090569 3 1 1 60 18 27205967 27205985 TCCCAATGTGGATGATGGA 58 27205925 27205945 AATAGCTTCCAACCCTTCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arhgef15 ENSRNOG00000004566 ENSRNOT00000084385,ENSRNOT00000067528 1 2 2 80 10 55536476 55536494 CCTAAGCCAGACAGAGGAG 59 55536316 55536433 CGCTCAATGATCTTGCTCAC 60 NA Rattus norvegicus 81 Atxn7l3b ENSRNOG00000059744 ENSRNOT00000088732 1 1 1 60 7 55604061 55604081 GCCCAGGAGATCTATGTAGAC 59 55604021 55604039 GCACCTCAAAGCAGAATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1310166 ENSRNOG00000003143 ENSRNOT00000004193 1 1 1 82 10 72486285 72488132 AAGCCACTAGAGAAGGTGG 59 72488178 72488196 TGACGGACCAGAACATCTC 59 NA Rattus norvegicus 81 Nol8 ENSRNOG00000046968 ENSRNOT00000073035 2 1 1 80 17 14568520 14568539 GGTTCCTGAGAAAGAGACCA 59 14568119 14568480 CTCCAGAATAAGTCAGAACCAC 59 NA Rattus norvegicus 81 Ccdc151 ENSRNOG00000013263 ENSRNOT00000017820 2 1 1 80 8 23001275 23001448 GGACAAGTTCTTTGACGAAGAG 60 23001216 23001234 TGGGAACGGATCTTGAAGG 59 NA Rattus norvegicus 81 Ifi35 ENSRNOG00000020678 ENSRNOT00000028067 1 1 1 82 10 89365668 89365782 TGACCAACATCCAGGTGTC 60 89365827 89365846 CTCACTCAGCCTAAGTCCAG 60 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000030154 ENSRNOT00000051252,ENSRNOT00000088209,ENSRNOT00000083686 1 3 3 80 5 134203996 134205013 CAGTATAATGCTAGACAAATGGGAG 60 134203940 134203961 GTCATCAAGGAGACATAGTGGA 59 NA Rattus norvegicus 81 Vom1r105 ENSRNOG00000049645 ENSRNOT00000088379 2 1 2 131 4 122131437 122131455 CATCTTCAGGGTACCAGCC 60 122131548 122178604 CATAGTTCTTGAGCTGCAGAC 59 NA Rattus norvegicus 81 Ccdc105 ENSRNOG00000007375 ENSRNOT00000009833 1 1 1 80 7 13917947 13917966 AACAGGAGATAAGCGATCGT 59 13918006 13918134 TGGTCATTCTTTCCTTCAACTC 59 NA Rattus norvegicus 81 F13b ENSRNOG00000012613 ENSRNOT00000016944,ENSRNOT00000080335,ENSRNOT00000089913 1 3 3 80 13 56616865 56616883 ACCCTGTCTGAAGTGTCTG 59 56616922 56618537 CATCCCTTTAGATTCTCTTCTCAC 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000089326 2 1 18 64 1 43508706 43508724 GTCCGTCAGAACACTAGGG 60 43508750 43518467 TTCTGGTGGTTAGTTCGATCC 60 NA DesignNoJunction Rattus norvegicus 81 Psma1 ENSRNOG00000011745 ENSRNOT00000015946 1 1 1 80 1 183739028 183739047 AGACCCAGATACCAACACAG 59 183738512 183738985 GGCCCATGTCATCATAACC 58 NA Rattus norvegicus 81 AABR07065640.1 ENSRNOG00000047622 ENSRNOT00000071078 1 1 1 116 6 138506945 138506963 AATCCCGACTGAGCATCAG 60 138506753 138506867 TCTGAAGTGATCTGTGTCTGG 60 NA Rattus norvegicus 81 Lrrtm4 ENSRNOG00000021938 ENSRNOT00000030588 2 1 1 117 4 110700402 110702286 ACAAAGGATGGGTTTCCGT 60 110702367 110702385 GTTCTTTGGGCAAGCTCTC 59 NA InUTR Rattus norvegicus 81 Cplx2 ENSRNOG00000000105 ENSRNOT00000091046,ENSRNOT00000000117 2 2 2 108 17 10758182 10758749 CAGCAGATTCGAGATAAGTATGG 59 10758096 10758114 CCTTCTTGGGTCTGGTCAG 60 NA Rattus norvegicus 81 Nsun4 ENSRNOG00000046192 ENSRNOT00000016013 3 1 1 80 5 134892889 134895227 CTGTTGCCGTAACCTAGCT 60 134892827 134892846 GGCACATAACTGTGAAGGAC 59 NA Rattus norvegicus 81 Diablo ENSRNOG00000029197 ENSRNOT00000047861 1 1 1 80 12 38496416 38496549 GAGTTGAGATGACTTCAAAGC 57 38496591 38496609 CCATCTCTGAAAGGCTGAC 58 NA Rattus norvegicus 81 LOC100910224 ENSRNOG00000050309 ENSRNOT00000075691 2 1 1 60 2 115239296 115239316 GGATTAACAAAGCAGCCTGAG 60 115239256 115239276 CATAGATGACCAGGAACAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctdsp2 ENSRNOG00000047598 ENSRNOT00000075371 1 1 1 80 7 70285563 70285582 AGAGCAAGATCAAGGAAGGA 59 70285624 70286548 TTGTTGATCGGCTTAAAGGA 58 NA Rattus norvegicus 81 Ctdsp2 ENSRNOG00000047598 ENSRNOT00000075371 2 1 1 80 7 70286585 70287632 CACGCACCAGGTATATGTG 58 70287674 70287694 AGAACACATTCAAAGAGCTCC 59 NA Rattus norvegicus 81 Tpm2 ENSRNOG00000016731 ENSRNOT00000049000,ENSRNOT00000022801 3 2 2 119 5 59021757 59021775 ATTCAGCTCGTAGAGGAGG 58 59021553 59021677 CTCAATGACCTTCATTCCTCTC 59 NA Rattus norvegicus 81 Yipf3 ENSRNOG00000018998 ENSRNOT00000025769 2 1 1 80 9 17119555 17119714 CAGGTAGCAGATCAGATGTG 58 17119494 17119512 CAGGATGTCGATATTGGCA 57 NA Rattus norvegicus 81 Slc6a7 ENSRNOG00000018644 ENSRNOT00000086464,ENSRNOT00000085841,ENSRNOT00000091220,ENSRNOT00000025209 3 4 4 82 18 56312642 56312660 CTATGTTGCCTCTGTCACC 58 56312507 56312596 AAAGGCAAACTGGCTATCG 59 NA Rattus norvegicus 81 Gng3 ENSRNOG00000019570 ENSRNOT00000026539 3 1 1 80 1 225035040 225035059 ACTATGAGTATTGGCCAAGC 58 225034709 225034997 CTTGGACACCTTTATCCGG 58 NA Rattus norvegicus 81 LOC100910410 ENSRNOG00000045544 ENSRNOT00000074821 2 1 1 80 9 16825899 16826320 TCTTTACTGCCTTGTGCTG 58 16826363 16826382 CCAGTTATGCAAGGACACAG 59 NA Rattus norvegicus 81 Myo1d ENSRNOG00000003276 ENSRNOT00000004609 3 1 1 80 10 68052974 68055299 CATTCTTTCTATCAGCTACTTCAGG 60 68052918 68052939 GTAGGATGAGAGTGATTTCTGC 59 NA Rattus norvegicus 81 Neil3 ENSRNOG00000011688 ENSRNOT00000015623 1 1 1 80 16 41121060 41125168 ATGTTCAAATATGCTCACTGCC 60 41126384 41126403 CTGAGTCGGTAAAGCAATCC 59 NA Rattus norvegicus 81 Anapc1 ENSRNOG00000016965 ENSRNOT00000055875 3 1 1 80 3 121175838 121176531 CTTGCTTAGGACACTTGCTC 59 121175777 121175795 GGAACATTGCTGTCAACCC 60 NA Rattus norvegicus 81 Man2a1 ENSRNOG00000015439 ENSRNOT00000020767,ENSRNOT00000086682 3 2 2 80 9 112363367 112363387 CTGCAGTACAGGAACTATGAG 58 112363427 112367378 AGTTCCAAACTGGATCTTCAC 58 NA Rattus norvegicus 81 Olr1406 ENSRNOG00000029930 ENSRNOT00000048759 3 1 1 60 10 36485625 36485645 AGCTACAGAATTTCTCCTCCT 58 36485665 36485685 GAACATTCCAAAGACAACCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hdac10 ENSRNOG00000031915 ENSRNOT00000055865 1 1 1 80 7 130104986 130105005 GCTTTGCCCATCTTACACAG 60 130104620 130104943 GATAGACTCCAGGGCACTC 59 NA Rattus norvegicus 81 LOC100910470 ENSRNOG00000050576 ENSRNOT00000072148 1 1 1 60 5 121308448 121308466 TCGTTCTAGACCAACTGCC 59 121308488 121308508 TCAATTCCGTCATACTTCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cox7c ENSRNOG00000030237 ENSRNOT00000051895 1 1 1 106 2 14701731 14701749 GTATCCGGAGGTTCACCAC 60 14700897 14700915 CATAAGCAGTAACCGCCAC 59 NA DesignNoJunction Rattus norvegicus 81 LOC690821 ENSRNOG00000049623 ENSRNOT00000052197 1 1 1 81 8 20780913 20781071 ATGGACCTCAAAGGGTGTC 59 20781114 20781134 CTGAGAGGCTCATAAGATGGA 59 NA Rattus norvegicus 81 Sh3glb1 ENSRNOG00000012957 ENSRNOT00000084337,ENSRNOT00000017770 2 2 2 80 2 250716324 250716705 GCAGACGAGGTAATCACTG 58 250716262 250716280 GCCCTTCTGATTTCCTCTC 58 NA Rattus norvegicus 81 Hsf1 ENSRNOG00000021732 ENSRNOT00000050108 3 1 1 82 7 117562278 117562403 CATACTCAGCTCCATCTCCAG 60 117562447 117562465 GGAGATTATGGGCCCAGAG 59 NA Rattus norvegicus 81 Lztr1 ENSRNOG00000001870 ENSRNOT00000002554 1 1 1 80 11 87395092 87395113 GATTGTAGAGATTGTTCGTCGG 59 87395153 87395831 AAAGATGTGCCAATGTCCAC 59 NA Rattus norvegicus 81 Cnot4 ENSRNOG00000010795 ENSRNOT00000040969 1 1 1 80 4 62591367 62592777 TTCACATCAGAAACAATCCCAG 59 62591308 62591328 CTCTGGCTGTTTAGAAGAACC 59 NA Rattus norvegicus 81 Rbm47 ENSRNOG00000002408 ENSRNOT00000003327 3 1 1 119 14 43831760 43833899 CATCAAACCTGGCACAGTG 60 43833980 43834000 CTGATCATGTGTTCCATTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Dlk1 ENSRNOG00000019584 ENSRNOT00000006339,ENSRNOT00000085933 3 2 2 80 6 133578068 133578539 GACAATGTCTGCAGGTGTG 59 133578583 133578601 TCCATTAACACAGCCAGGG 60 NA Rattus norvegicus 81 Toe1 ENSRNOG00000017561 ENSRNOT00000066869,ENSRNOT00000087237 3 2 2 81 5 135661780 135661915 CAACCAGATAAGGGTGACAG 58 135661718 135661741 GTTCTATAACATACTCCTCCATGC 59 NA Rattus norvegicus 81 Golga1 ENSRNOG00000014493 ENSRNOT00000019703 3 1 1 80 3 23316087 23316387 AGGAGCCACTAGTCATCTC 58 23316025 23316043 CCTCACCATTTGGAGTTCC 58 NA Rattus norvegicus 81 Dopey2 ENSRNOG00000051204 ENSRNOT00000076259,ENSRNOT00000083594 1 2 2 80 11 33964983 33965665 ATCTTCTAGTTGAGGCTCTGG 59 33965707 33965725 GATATTCATGGTGGCGCTC 59 NA Rattus norvegicus 81 LOC364556 ENSRNOG00000032995 ENSRNOT00000049187 2 1 1 80 16 28155190 28157463 GCTCATACCTAGCAGATCCC 60 28155129 28155150 TAGATGCTTCAGTCCTACTCAG 59 NA Rattus norvegicus 81 Lap3 ENSRNOG00000003289 ENSRNOT00000004770 1 1 1 80 14 70110641 70111856 TTTGACAGCGGAGGTATCTC 60 70110580 70110598 TATTGTTGCTGCTCCTCCC 60 NA Rattus norvegicus 81 Lap3 ENSRNOG00000003289 ENSRNOT00000004770 3 1 1 82 14 70106284 70108339 CTTTAACAGGTGCCATGGA 58 70106220 70106238 TAGTTTGTTCCACAGCCAG 58 NA Rattus norvegicus 81 Grn ENSRNOG00000021031 ENSRNOT00000028557,ENSRNOT00000040472 3 2 2 80 10 90379861 90380003 TCTCTGAGGGTGTATCTTGTG 59 90380045 90380063 AGCAGGATTTCCCATCCAC 60 NA Rattus norvegicus 81 LOC100910472 ENSRNOG00000004484 ENSRNOT00000005925 2 1 1 94 7 118502748 118503109 AATGCAACTGTGGTTAGGAC 59 118503166 118503184 ATGGTGCAAGTATGGAGCT 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Nhlh2 ENSRNOG00000054375 ENSRNOT00000083374 3 1 1 116 2 204427682 204427700 CTCTCCTTCCTCTGCTTCC 59 204427780 204428203 CACTCTTAGGGCTTGTGGT 59 NA InUTR Rattus norvegicus 81 Ncf2 ENSRNOG00000028016 ENSRNOT00000066331,ENSRNOT00000088724,ENSRNOT00000088649,ENSRNOT00000090174 2 4 4 80 13 70253606 70253625 GAAAGCATGAAGGATGCCTG 60 70253668 70254928 ACCTTGATCACCCACTGTG 60 NA Rattus norvegicus 81 Kif22 ENSRNOG00000020281 ENSRNOT00000027525 1 1 1 80 1 198463052 198463070 CTTCCTCCTGTAGTGGCTC 59 198462634 198463008 CTGACTGCTTCTGAATCCG 58 NA Rattus norvegicus 81 RGD1565159 ENSRNOG00000048753 ENSRNOT00000049363 2 1 1 60 2 53717939 53717958 AAGAGTCTACAATGTCACCC 57 53717898 53717919 GCCTTTAACTTGCTTGTTTACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC498675 ENSRNOG00000046155 ENSRNOT00000075271 3 1 1 83 8 117171346 117171365 CATTCTGGCACGTGAAAGAC 60 117171407 117172955 TCCATACCCTTCCTTAAACTCTC 59 NA Rattus norvegicus 81 AABR07027098.1 ENSRNOG00000048372 ENSRNOT00000071112 2 1 1 80 17 14370714 14370961 CATCTGTGATTCCAAGGCTG 59 14370653 14370673 GATGCACTTTCTACCCTTGTC 59 NA Rattus norvegicus 81 Rps25-ps2 ENSRNOG00000051314 ENSRNOT00000076376 3 1 1 60 20 5078522 5078544 GCTACTTGGTAAAGGACTTAGGA 60 5078563 5078582 GGTATCAACTACTTGGGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxo41 ENSRNOG00000033202 ENSRNOT00000043201,ENSRNOT00000084049 2 2 2 84 4 117261660 117261808 CTGTCACCTACAGGAGTGC 60 117261594 117261612 AGGGAGACAATGTCTCTGC 59 NA Rattus norvegicus 81 Rn60_1_0777.1 ENSRNOG00000031005 ENSRNOT00000046600 3 1 1 82 1 76345678 76345699 CAATAACATTGTTGCCAACTCC 59 76338597 76345641 CTTGGTATCCTTACCATTCATTCTC 60 NA Rattus norvegicus 81 Baiap3 ENSRNOG00000017893 ENSRNOT00000024072 2 1 1 80 10 14604612 14604632 CTTGCAGACATCATCTACGAG 59 14604450 14604571 GTCCACCTTAAGGATACCGT 59 NA Rattus norvegicus 81 Pex19 ENSRNOG00000022572 ENSRNOT00000032563 2 1 1 81 18 71607622 71608343 TATGCAGCAGTTACAGGAC 57 71607397 71607415 ATCCAGGTCAAAGTTGAGG 57 NA Rattus norvegicus 81 Mir141 ENSRNOG00000035577 ENSRNOT00000053700 3 1 1 60 4 157236413 157236432 TCTGAGTCCATCTTCCAGTG 59 157236372 157236391 AGACAGTGTTAGGAGCTTCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1566099 ENSRNOG00000043374 ENSRNOT00000066601 1 1 1 80 13 55883301 55883320 ACTGGCTATGTGGTTCTCAC 60 55881721 55883259 ATATGGACAGTGTCTGCAGG 60 NA Rattus norvegicus 81 Selv ENSRNOG00000051208 ENSRNOT00000087175 2 1 2 85 1 85499565 85499701 GCCTTCGGTACATTCTACTG 58 85499847 85499865 AACCTGGGTAGCTCTTTCC 59 NA Rattus norvegicus 81 Tgfa ENSRNOG00000016182 ENSRNOT00000057441 2 1 1 150 4 118040386 118040405 GCTGTCCTCATTATCACCTG 58 118041817 118042326 TTCAGACCACTGTCTCAGAG 59 NA Rattus norvegicus 81 Obfc1 ENSRNOG00000020376 ENSRNOT00000027614 1 1 1 80 1 267295415 267295434 CAGAGCTCTACAAGAAGGTG 58 267293339 267295375 TGTCTTTACTGTTTAGTGCCTC 58 NA Rattus norvegicus 81 Rn60_1_1144.1 ENSRNOG00000028324 ENSRNOT00000030707 2 1 1 60 1 113346513 113346532 TCCCACAGTATATGCCTGAG 59 113346472 113346490 AAGGAGAGGTTGATGAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042384.1 ENSRNOG00000056271 ENSRNOT00000089929 2 1 1 96 X 154548226 154548244 CAGGAATTTCACACGGCTG 60 154548300 154548472 CTGGTTTCTTAGTTACCTTGACC 59 NA Rattus norvegicus 81 LOC100912136 ENSRNOG00000045971 ENSRNOT00000071683 3 1 1 60 8 41253299 41253319 ACATTCTTGGTTTCCATGCTG 60 41253340 41253359 TCTTGACATCCTTGTTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dync1li1 ENSRNOG00000010434 ENSRNOT00000014532 3 1 1 80 8 122760425 122760445 TAGAGGAGTACAAGAAGGGAC 58 122760484 122761166 ATCTTGTTTGATCATCCCTGTC 59 NA Rattus norvegicus 81 Pigy ENSRNOG00000052134 ENSRNOT00000078067 3 1 1 100 8 23168015 23168774 GCCAGTGAATGTAAGGAATCC 59 23168835 23168854 TTCTGATCCAATCCACCACC 60 NA InUTR Rattus norvegicus 81 Ms4a2 ENSRNOG00000020993 ENSRNOT00000028491 1 1 1 80 1 227960615 227961257 ACTGTATCTGGTGAGAGGC 59 227960553 227960572 AGAATCAATATGGCGATCCC 58 NA Rattus norvegicus 81 Atp2b1 ENSRNOG00000004026 ENSRNOT00000041354,ENSRNOT00000066174 1 2 2 80 7 41186203 41189729 CCTTGCTTCTTTCAGGTACTC 59 41189770 41189789 CAGTTTGAGAGTTCACACCT 58 NA Rattus norvegicus 81 Phtf2 ENSRNOG00000013517 ENSRNOT00000066739 3 1 1 80 4 10912707 10912727 AGACAGATGTGGGAAATCCTC 60 10912765 10920543 GTAAATGAGTCTGATGGAAAGGG 59 NA Rattus norvegicus 81 LOC100911572 ENSRNOG00000015365 ENSRNOT00000020669 2 1 1 80 9 88447568 88448711 AAGGACAACCAGGTAGAAGAG 59 88448753 88448771 CAGGGACTCCAGATCTGTC 59 NA Rattus norvegicus 81 Insm2 ENSRNOG00000007754 ENSRNOT00000010188 2 1 1 60 6 76384393 76384411 CCTACAGGCTCTAGTGCAC 60 76384435 76384453 AATCACCTCGGAGTAGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sp4 ENSRNOG00000005472 ENSRNOT00000007625 2 1 1 97 6 146152964 146193121 TCACTAGTGTTGCAGGTCAG 60 146152886 146152905 ATTAGCGATCCCTCCAACTG 60 NA Rattus norvegicus 81 Ube2k ENSRNOG00000027088 ENSRNOT00000030485 3 1 1 104 14 44323290 44323308 GAAATAGCAGGACCTCCAG 57 44305850 44316667 GATAAACCGGACCTTAGGG 57 NA Rattus norvegicus 81 Papd4 ENSRNOG00000012099 ENSRNOT00000016135 1 1 1 80 2 22751401 22755545 GCTACAGAATTTGACTGGAATACTC 60 22751345 22751365 CCATTCCATATCATCTGGCCT 60 NA Rattus norvegicus 81 Pdxp ENSRNOG00000009570 ENSRNOT00000073905 3 1 2 62 7 120144797 120144815 GCATTGCAGACTTGATGGA 59 120144843 120144861 CTACGGGATCAGGGAACTG 59 NA DesignNoJunction Rattus norvegicus 81 Plxna3 ENSRNOG00000060464 ENSRNOT00000083148 1 1 1 80 X 156368117 156368135 GTGCCCAAACAAGTGTCTG 60 156367779 156368074 GAGCAAACTCTCATAGCGAC 59 NA Rattus norvegicus 81 RGD1562381 ENSRNOG00000029835 ENSRNOT00000040565 2 1 1 60 6 99575921 99575941 GATAACTATGTTCCTGAGGGC 58 99575881 99575900 TGTCAGGATCTACCTCAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 rno-mir-196b-1 ENSRNOG00000049663 ENSRNOT00000071351 2 1 1 60 4 82284900 82284919 AGGTAGTTTCCTGTTGTTGG 58 82284859 82284877 GTAATGAAGGCAGTGTCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1555 ENSRNOG00000058137 ENSRNOT00000086976 1 1 1 60 11 43594424 43594443 TTATCATCCACAGTGACACC 57 43594383 43594401 AAATCACCTTGCCCTTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnk18 ENSRNOG00000032706 ENSRNOT00000042977 2 1 2 83 1 280387118 280396914 TCAGCACAGTGGGTTATGG 60 280396957 280396979 GGATTCCAAAGAGTGCATATAGC 60 NA Rattus norvegicus 81 Kcnk18 ENSRNOG00000032706 ENSRNOT00000042977 3 1 2 83 1 280383829 280383847 GAAGCAGAGGAGAACCCTG 60 280383894 280387011 ACCTTCAACCACTGTCAGG 60 NA Rattus norvegicus 81 Mogs ENSRNOG00000008648 ENSRNOT00000011521 2 1 1 82 4 113949597 113949615 GTGAACTTGGTGACTTCCG 59 113949661 113949825 GACATTGTAGCTGCCATGC 60 NA Rattus norvegicus 81 Scap ENSRNOG00000020853 ENSRNOT00000028295,ENSRNOT00000090238 3 2 2 80 8 118622604 118622623 TGACTTCTTCCTCCAGATGC 60 118622665 118622818 TTGTTCAGGTCTGCTAGCTC 60 NA Rattus norvegicus 81 LOC689600 ENSRNOG00000057651 ENSRNOT00000084905 1 1 1 96 X 153456906 153456924 TACAGGAATTTCACACGGC 58 153456678 153456849 GGTTTCTTAGTTACCTTGACCT 58 NA Rattus norvegicus 81 Nup85 ENSRNOG00000003673 ENSRNOT00000005035 1 1 1 80 10 104134440 104134458 TTCCTCTCAACACAGAGCA 59 104134501 104135027 TGCTTCCAACTTGTTCAGTC 59 NA Rattus norvegicus 81 LOC298795 ENSRNOG00000004188 ENSRNOT00000005553 1 1 1 60 6 23757457 23757475 CAGAAGATCAACGAGGAGG 57 23757499 23757517 TCTCCCGGTACTCTTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 St3gal5 ENSRNOG00000010284 ENSRNOT00000050249,ENSRNOT00000078793 1 2 2 80 4 99995019 99998708 GGGCCATGATAAGAATATCCC 58 99998750 99998768 GCCAGGCTAACTTCATCAC 59 NA Rattus norvegicus 81 Poc1b ENSRNOG00000024450 ENSRNOT00000031905 1 1 1 80 7 41305138 41322532 ACAAATTGCTACTGCTTCCT 58 41322575 41322593 CCCACGTATCTGTAAGCTC 57 NA Rattus norvegicus 81 AABR07065792.1 ENSRNOG00000042197 ENSRNOT00000067336 3 1 1 87 6 141487858 141488224 TGATGGCACTAACTACAGGG 59 141487790 141487808 AACTTGACTGAGGTCCCAG 59 NA DesignNoJunction Rattus norvegicus 81 Nfu1 ENSRNOG00000018410 ENSRNOT00000024884 1 1 1 81 4 118820121 118820139 GAAAGCCGGTTCTTGAGAC 59 118820184 118823680 AATAACTGCCTGGCCAGAG 60 NA Rattus norvegicus 81 AABR07069352.1 ENSRNOG00000054195 ENSRNOT00000074246 2 1 1 68 8 18095150 18095168 CTCACTTGGCAGTTGTCTG 59 18095098 18095118 GGGAAACAGTAATTGAAGAGC 57 NA DesignNoJunction Rattus norvegicus 81 Nrip1 ENSRNOG00000001585 ENSRNOT00000002152 1 1 1 92 11 14700937 14700955 GACTCCGGTGACATCAGAG 60 14665754 14700883 AGAACAGTATCGTCTGTCTCG 59 NA InUTR Rattus norvegicus 81 Mab21l1 ENSRNOG00000032941 ENSRNOT00000040631 1 1 1 60 2 145175780 145175799 TGTAGTAAAGATGGTGGCTG 57 145175819 145175840 CACATACCTATCTCGGATTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcb8 ENSRNOG00000008557 ENSRNOT00000089817,ENSRNOT00000012222 3 2 2 81 4 7304783 7304801 CTGCTGTAAAGCAGAGGAG 58 7304056 7304740 CAAGACCATACAGTTGAAAGC 58 NA Rattus norvegicus 81 Pdcd1 ENSRNOG00000049797 ENSRNOT00000074915 2 1 1 82 9 101309913 101319780 GTGGCTTCTAGAGGTCCTC 59 101309849 101309867 CATTTGCTCCCTCTGACAC 59 NA Rattus norvegicus 81 Nmrk1 ENSRNOG00000012665 ENSRNOT00000016930 1 1 1 80 1 234732725 234732878 CCTGCTCTTTAATTATAAGCCTCTG 60 234732669 234732693 CTCTTACATTCTTCATATGGAACGG 60 NA Rattus norvegicus 81 Cd274 ENSRNOG00000016112 ENSRNOT00000034421 3 1 1 80 1 247526572 247532982 AAAGTCAACGCTCCATACC 58 247533025 247533044 CTGGCACATTAGTTCATGCT 59 NA Rattus norvegicus 81 Tmem30b ENSRNOG00000008046 ENSRNOT00000010923 2 1 1 60 6 96441750 96441769 AACATCACCTACAACTACCC 57 96441709 96441730 TGCTAAGGATGATAAGCTTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064590.1 ENSRNOG00000050408 ENSRNOT00000072471 2 1 1 60 6 86160975 86160993 AACACATGGAAACAACCCT 58 86160933 86160953 GTATCTACAGCTCCTTGTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064590.1 ENSRNOG00000050408 ENSRNOT00000072471 3 1 1 60 6 86160974 86160992 ACACATGGAAACAACCCTG 58 86160932 86160953 TGTATCTACAGCTCCTTGTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ube3a ENSRNOG00000015734 ENSRNOT00000021366,ENSRNOT00000083587 1 2 2 80 1 116660498 116674186 TGTTGTGATTAGGGAGTTCTG 58 116674228 116674246 CCTGTTGTAAACTGCAGGA 58 NA Rattus norvegicus 81 Fam110d ENSRNOG00000016491 ENSRNOT00000022130 2 1 1 146 5 152473808 152473826 ACTGAAACTCAGCGTCTCC 60 152471928 152471946 GATGGTGTAGTGGGTGAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mb21d1 ENSRNOG00000046191 ENSRNOT00000081544,ENSRNOT00000073286 3 2 2 81 8 85795740 85797286 GATCAAAGATACAGATGTCACCG 59 85795681 85795701 TTCTTCAGGGTTCCTGATGAG 60 NA Rattus norvegicus 81 Krt10 ENSRNOG00000030170 ENSRNOT00000036023,ENSRNOT00000081709 3 2 2 80 10 87298261 87298374 GGTTCAATGAGAAGAGCAAGG 59 87298201 87298222 TGATTTCACTCTTATGGCTGGA 60 NA Rattus norvegicus 81 RGD1559639 ENSRNOG00000038735 ENSRNOT00000059150 1 1 1 60 6 91113837 91113855 CGTGAAGATGACCGATGAC 58 91113795 91113813 CACCAAGAAGTTGACAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1559639 ENSRNOG00000038735 ENSRNOT00000059150 3 1 1 60 6 91113833 91113852 GAAGATGACCGATGACAAGC 59 91113792 91113811 GGACACCAAGAAGTTGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dlk2 ENSRNOG00000018949 ENSRNOT00000025638 2 1 1 94 9 17062803 17063357 TTCTGTGACAAAGATGAGCAC 59 17062729 17062747 ACACAGTGGTACTCACCAC 59 NA Rattus norvegicus 81 Dennd2a ENSRNOG00000026748 ENSRNOT00000034549 1 1 1 80 4 67287338 67299959 TGACCACAGAAAGTCCTATGAG 60 67287279 67287297 GTCTGTGCATACCAGTCCA 59 NA Rattus norvegicus 81 Agfg1 ENSRNOG00000015619 ENSRNOT00000021309 3 1 1 80 9 88650281 88650300 GAGTTAGACAGCGTGTTCAG 59 88650343 88653354 AAAGACACTGCTGCTAGCA 60 NA Rattus norvegicus 81 LOC100911515 ENSRNOG00000050669 ENSRNOT00000089341,ENSRNOT00000071439 2 2 2 80 9 20215436 20215455 AAGTTAGACGAAAGGGAAGC 58 20215497 20215932 GTCCTTCACATTATCTGCGA 58 NA Rattus norvegicus 81 Ebp ENSRNOG00000004903 ENSRNOT00000007015 1 1 1 80 X 15051856 15054185 CCCAACTCTGGAAAGAATATTCC 59 15054332 15054351 TGACACTCTCCATACAGACG 59 NA Rattus norvegicus 81 Lipe ENSRNOG00000020546 ENSRNOT00000027910 1 1 1 87 1 82257058 82265668 CTACTGGGATACAGCCTCG 59 82256989 82257007 CATGTTGTCTTCTGCGAGC 60 NA Rattus norvegicus 81 Rcan2 ENSRNOG00000010350 ENSRNOT00000029593,ENSRNOT00000013956 1 2 2 83 9 19538016 19540702 CTACTTTGCACAGGTCCAG 58 19537951 19537969 ATGAGGAACTGTTTGGCAG 58 NA Rattus norvegicus 81 Ankrd34b ENSRNOG00000040166 ENSRNOT00000061812 1 1 1 80 2 22006793 22013349 CCACATCTCAGGTATTGATTTCTG 60 22013385 22013406 TTGATCAAGGAATTTCCATCCG 59 NA InUTR Rattus norvegicus 81 Cpsf7 ENSRNOG00000020668 ENSRNOT00000028074 3 1 1 80 1 226580060 226580084 CTCTATAGGAGTCTATGATGTGGTG 60 226580120 226580511 ACCTCAGCATACCCTTTAGAC 59 NA Rattus norvegicus 81 Mir6324 ENSRNOG00000046478 ENSRNOT00000075626 1 1 1 60 11 36383571 36383589 CAACTGAGTCAGTAGGCCA 59 36383529 36383547 AGGGTCAGTGAAATTGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir301b ENSRNOG00000040402 ENSRNOT00000062155 2 1 1 60 11 88129439 88129459 TGACTAGGTTGCACTACTGTG 60 88129479 88129499 CCCAGATGCTTTGACAATACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trib2 ENSRNOG00000004110 ENSRNOT00000005774 3 1 1 152 6 41034347 41039404 GGTGTGCAAGGTGTTTGAG 60 41034213 41034231 TGCATGTCTCCATAGCTCC 59 NA InUTR Rattus norvegicus 81 Gpi ENSRNOG00000023150 ENSRNOT00000032613 2 1 1 80 1 90079771 90081301 TTATAATCGCCTCCAAGACCT 59 90079711 90079729 CAGCTTGGAGAAACCACTC 59 NA Rattus norvegicus 81 Orc4 ENSRNOG00000005021 ENSRNOT00000006937 2 1 1 81 3 33058968 33058987 AATCATGCCTTGAAAGAGCT 58 33058533 33058927 TCTGTAGCAGTCCATTTAAGTG 58 NA Rattus norvegicus 81 AABR07007544.1 ENSRNOG00000048330 ENSRNOT00000073727 2 1 1 86 2 17939769 17939792 CCTTCAAGAATTACAGGAGAACAC 60 17939682 17939701 AATTCCTTTACTGGCATGCT 58 NA DesignNoJunction Rattus norvegicus 81 Cdca7l ENSRNOG00000005410 ENSRNOT00000064868,ENSRNOT00000088969 3 2 2 80 6 145776306 145776327 GACTCGGACAATGAAGATTTCG 60 145776366 145778975 CTCTGACTCTATGAGCTCTGG 59 NA Rattus norvegicus 81 Gnao1 ENSRNOG00000019482 ENSRNOT00000026373 3 1 1 80 19 11668758 11668779 CAAAGACGTGAAATTACTCCTG 58 11582678 11668522 TCATGGATGATCTTCATCTGC 58 NA Rattus norvegicus 81 Dtd2 ENSRNOG00000006727 ENSRNOT00000009020 1 1 1 89 6 72785239 72786707 AGATTCGGAGAGGATTGGTG 59 72781634 72785189 CGTTTAACAGCGTATTGACCA 59 NA Rattus norvegicus 81 Art2b ENSRNOG00000019687 ENSRNOT00000087792 1 1 2 80 1 166670094 166670580 TGGTTAATTCAGCAGGTGAC 58 166670033 166670054 CTCATACTGGTCATCAAATGCA 59 NA Rattus norvegicus 81 AABR07033162.1 ENSRNOG00000030674 ENSRNOT00000052022 2 1 1 79 11 8268906 8268924 AGTACCAGAAGAGGGTCAC 58 8268969 8268987 CTGTTCTTTCCTGCCATCC 59 NA DesignNoJunction Rattus norvegicus 81 Prdx1 ENSRNOG00000017194 ENSRNOT00000023132 1 1 1 80 5 135543256 135543692 TCATCTGGCATGGATTAACAC 59 135543734 135543752 CGCTTGGGATCTGATACCA 59 NA Rattus norvegicus 81 Trmt1l ENSRNOG00000002580 ENSRNOT00000003517 2 1 1 80 13 68797916 68800484 GAGAGCAGATATCCAGTAAATTGG 59 68800523 68800541 GCATGTCAGTCCTTCTGGT 60 NA Rattus norvegicus 81 Cadm2 ENSRNOG00000030840 ENSRNOT00000087133,ENSRNOT00000046370 1 2 2 82 11 4327027 4327046 AAGGACAGTACACCTGTTCC 59 4324426 4326982 CTTCTCTGGAACACCCAGG 60 NA Rattus norvegicus 81 Cadm2 ENSRNOG00000030840 ENSRNOT00000087133,ENSRNOT00000046370 3 2 2 84 11 4286163 4300197 GGTGCTAGAAATACACTATACACC 59 4286102 4286122 AGTCAATGTTAAAGCCTGTCC 59 NA Rattus norvegicus 81 Vom2r35 ENSRNOG00000050831 ENSRNOT00000052029 1 1 3 80 1 66010534 66011113 CGGTTATCATTGCTTCTTCCA 59 66011153 66011173 GACAAAGACAGACACTACCTC 58 NA Rattus norvegicus 81 Asgr1 ENSRNOG00000018693 ENSRNOT00000086919,ENSRNOT00000025254 3 2 2 80 10 56664540 56664563 GTGGGAAGAAAGATGAAGTTAGTC 60 56664599 56665025 TAGCAATCTAGAGTGGTCTTCC 59 NA Rattus norvegicus 81 Abhd16a ENSRNOG00000056637 ENSRNOT00000083284,ENSRNOT00000077082 1 2 3 80 20 5094134 5094152 CGAGTGATGACAGAGGAGG 59 5094193 5094290 ATAAATGGAGGCTTCCTCTAGC 60 NA Rattus norvegicus 81 Rn60_1_1353.1 ENSRNOG00000051335 ENSRNOT00000076599 1 1 1 60 1 134195457 134195476 CACACTTCACATCCTCTTCC 58 134195497 134195517 TCATAACTTCTCTGATGCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ssr4 ENSRNOG00000053172 ENSRNOT00000083557 1 1 1 80 X 156997792 156997812 CAGATGCCGTCATTTCTACAG 59 156996750 156997750 GAGCCATATTCTGGACCCT 59 NA Rattus norvegicus 81 Rn60_1_1368.1 ENSRNOG00000051333 ENSRNOT00000076462 2 1 1 60 1 135713024 135713042 AACAACGGGTGATTCAGAG 58 135713065 135713084 TAGCAACCTGGACATTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363048 ENSRNOG00000032740 ENSRNOT00000050090 3 1 1 60 9 61552392 61552410 AGTAGGTATACCAGCCCAG 58 61552434 61552452 CCAGAAGTACCACAGTCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Alox12e ENSRNOG00000019074 ENSRNOT00000025910 2 1 1 80 10 56930000 56930021 CTCTTGGACGTGAAATCTTCTC 59 56929844 56929959 CATCCTTCCCACATACCGA 59 NA Rattus norvegicus 81 Gzmm ENSRNOG00000030530 ENSRNOT00000011086 2 1 1 82 7 12894512 12894531 CCTTCTACATCAAGCAAGCC 59 12894354 12894467 TCCATCCAGCTTAAGCAGG 60 NA Rattus norvegicus 81 Pdgfb ENSRNOG00000017197 ENSRNOT00000023196 1 1 1 80 7 121224339 121224357 ATGAAATGCTGAGTGACCA 57 121222206 121224295 CATCTTCGTCTACGGAGTC 57 NA Rattus norvegicus 81 Rhob ENSRNOG00000021403 ENSRNOT00000008008 2 1 1 60 6 33690933 33690951 TCGTGTTCAGTAAGGACGA 58 33690891 33690910 ACATAGTTCTCGAACACGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnase1l1 ENSRNOG00000055641 ENSRNOT00000083203,ENSRNOT00000077322 1 2 2 80 X 156434860 156435189 CTTAGTTCAGATCCTAGCCCG 60 156435228 156435249 AGAAAGAGGACAGTATTCTGGG 59 NA Rattus norvegicus 81 Defb49 ENSRNOG00000039651 ENSRNOT00000060805 1 1 1 66 9 24451381 24451399 CTCGACCTGTTGAAGACAG 58 24446416 24446434 TGCCTTTCTTGAGAAAGCA 58 NA DesignNoJunction Rattus norvegicus 81 Mgat3 ENSRNOG00000017434 ENSRNOT00000023434 3 1 1 84 7 121408869 121432403 CTTCACCTTGGATGAAGATGAG 59 121432447 121432466 AAGTGCAGGAAGGAGATGAG 60 NA InUTR Rattus norvegicus 81 Bok ENSRNOG00000018214 ENSRNOT00000024695 2 1 2 111 9 100833054 100833072 CGTATATCGGAATGTGGCC 58 100833147 100838970 CCATGTGATACCTGCTGAG 58 NA Rattus norvegicus 81 LOC102550396 ENSRNOG00000030870 ENSRNOT00000043229 1 1 1 80 4 155729806 155729826 GCATTCGCCTATGTATTTGCT 60 155728051 155729764 TTGAGACAGAGTCGACAGG 59 NA Rattus norvegicus 81 Anks6 ENSRNOG00000023309 ENSRNOT00000060005 1 1 1 80 5 62671161 62671180 GGGCTGATGTTACTCTTCGA 60 62668392 62671121 GTTCAGTGTCAGGATCATTCAG 59 NA Rattus norvegicus 81 AABR07036374.1 ENSRNOG00000001347 ENSRNOT00000001818 3 1 1 133 12 40535054 40535072 AGGATGTCCTCCTGTTTGC 60 40535167 40535221 ACTGGTCTTACTGATCGTCTC 59 NA Rattus norvegicus 81 Smug1 ENSRNOG00000036842 ENSRNOT00000055290 1 1 2 186 7 144778334 144778485 TCCATACCAGGTCACAACG 59 144778166 144778184 TGTAGATGACACCCACAGG 59 NA InUTR Rattus norvegicus 81 Miox ENSRNOG00000008694 ENSRNOT00000011941 2 1 1 80 7 130310445 130310464 CAGAACTTGGCATGTACCAG 59 130310503 130310621 TCTGGTATAGGTACTCATCATGG 59 NA Rattus norvegicus 81 Mcm8 ENSRNOG00000021272 ENSRNOT00000028898 2 1 1 80 3 125477848 125479191 CAACAAAGTGTCCTGTGCC 60 125479235 125479253 AGTCCATTGTGACGGTGAG 60 NA Rattus norvegicus 81 Cntnap1 ENSRNOG00000020277 ENSRNOT00000027505 3 1 1 80 10 89095465 89095483 AGAGTTTCGGAAGCTTGGT 59 89095525 89095804 CACATATTAGGGCTGCATCTG 59 NA Rattus norvegicus 81 Adgrl2 ENSRNOG00000032660 ENSRNOT00000042256,ENSRNOT00000045905,ENSRNOT00000081945,ENSRNOT00000040566,ENSRNOT00000045020 2 5 5 80 2 258825659 258828093 GCTTACCTTAAGGCCATTGTG 60 258825599 258825619 GGAATTCATGTGTTTCCAGCA 60 NA Rattus norvegicus 81 Tm2d3 ENSRNOG00000011290 ENSRNOT00000015287 3 1 1 80 1 126586945 126586964 GCTGGCTCAGTCAATAAAGG 59 126587006 126588225 GAGAACAGCTGATTCTCTGC 59 NA Rattus norvegicus 81 Gfer ENSRNOG00000013370 ENSRNOT00000017917 2 1 1 86 10 14060047 14060827 TAAGGAAGAGGATAGACAGGAG 58 14059982 14060000 TCACTTCATTGTGAAGGCG 59 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000081108,ENSRNOT00000001853 2 2 6 93 12 41264266 41264284 CTCTGAGCTTCAAGCTGAG 58 41262300 41264209 GGGATACAAACATGACCCA 57 NA Rattus norvegicus 81 Cd38 ENSRNOG00000003069 ENSRNOT00000004121 2 1 1 80 14 71722570 71724556 CAGTACTTCCGATATGAACTATGAC 59 71722514 71722532 TTCCAGAACACAGCAACAG 58 NA Rattus norvegicus 81 Rc3h2 ENSRNOG00000009196 ENSRNOT00000078718,ENSRNOT00000012354 2 2 2 80 3 21635413 21637307 CCACAAACAGGATACTACCCA 60 21635353 21635371 ATTGGACCTCACAAAGCGA 60 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000074070,ENSRNOT00000024187 1 2 7 80 19 15108361 15110227 CTCTGTTCTTGTGTTGTCCC 59 15110270 15110288 TCAGTAATGAGGACCACCC 58 NA Rattus norvegicus 81 RGD1304622 ENSRNOG00000000040 ENSRNOT00000004704 3 1 1 80 13 72871412 72872752 AATGGAGATGGAACGCTCC 60 72871350 72871368 GAGGGAGAGGGTGATAGCT 60 NA Rattus norvegicus 81 Cxcl14 ENSRNOG00000011984 ENSRNOT00000016009 1 1 1 80 17 9113805 9113825 ATCCTAAGCTGCAAAGTACCA 60 9113866 9116639 CCTACTCTTCGTAGACCCTG 59 NA Rattus norvegicus 81 Zfp879 ENSRNOG00000030517 ENSRNOT00000030035 1 1 1 80 10 36328512 36332748 AAGGTGTATACCTCGGGTG 59 36328450 36328470 TCTGGTGTTTCAAGACTTCCT 59 NA Rattus norvegicus 81 Zfp879 ENSRNOG00000030517 ENSRNOT00000030035 3 1 1 81 10 36328512 36332748 AAGGTGTATACCTCGGGTG 59 36328449 36328469 CTCTGGTGTTTCAAGACTTCC 59 NA Rattus norvegicus 81 Ltn1 ENSRNOG00000001602 ENSRNOT00000002180,ENSRNOT00000073948 2 2 2 80 11 27026480 27026501 ATGGTTTCAACTATTCCCTTCC 59 27024746 27026440 ACCATTTGTACAAGCAAGCT 58 NA Rattus norvegicus 81 AABR07065778.2 ENSRNOG00000047308 ENSRNOT00000074472 3 1 1 60 6 141008238 141008256 ACAAACTATGCACCATCCA 57 141008196 141008215 TGTTCTTGGCATTGTCTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msantd3 ENSRNOG00000008159 ENSRNOT00000011273,ENSRNOT00000083796 2 2 2 80 5 64294800 64294819 AGCTCTACTTCCTTCAGAGC 59 64294861 64303956 AAACAGCAAAGGACTCTTGG 59 NA Rattus norvegicus 81 Cct8 ENSRNOG00000001592 ENSRNOT00000002169 2 1 1 80 11 27139613 27139633 AAATGGTGATTAATCGCCTGG 59 27137802 27139571 GATGCTGCACTTCTAGCTC 58 NA Rattus norvegicus 81 Hao1 ENSRNOG00000004601 ENSRNOT00000006330 2 1 1 80 3 127453249 127453268 TTAAACATGGTGTGGATGGG 58 127448723 127453206 GGGCATCAATAGTAGCTGG 58 NA Rattus norvegicus 81 Ahnak2 ENSRNOG00000028545 ENSRNOT00000039631 3 1 1 60 6 137338956 137338974 TTCCCAAATTCCACAAGCC 59 137338914 137338933 GGACATTCAGACTCAGAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1559629 ENSRNOG00000031317 ENSRNOT00000049500 3 1 1 60 6 69950763 69950784 CTTGATTATTGGCTATGCCAGG 60 69950805 69950823 AATGGGATAGGAGGAGAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptpru ENSRNOG00000013515 ENSRNOT00000091637,ENSRNOT00000036148 2 2 2 80 5 149930755 149930774 GTCGTGGACATTTACAACTG 57 149930281 149930714 GAAGATGTATTGTTCCTCGGT 58 NA Rattus norvegicus 81 Mroh9 ENSRNOG00000003698 ENSRNOT00000004931 3 1 1 80 13 80944569 80944588 TGGACAAGGTGATCTACTCC 59 80939306 80944527 TGCCACCATTAACATGATCC 58 NA Rattus norvegicus 81 Gfpt2 ENSRNOG00000002810 ENSRNOT00000003770 3 1 1 80 10 35296226 35296895 AGGAAATTTCTGGAAAGCAAGG 60 35296933 35296954 TACGTATTTAATCAGCTTGGCG 59 NA Rattus norvegicus 81 Kcnip4 ENSRNOG00000032350 ENSRNOT00000049743,ENSRNOT00000079658 2 2 2 80 14 66742820 66744688 ACTAAAGAGGAAATGCTGGAC 58 66744730 66744748 ATCTTCCTTGAGGACAGGG 58 NA Rattus norvegicus 81 RGD1559921 ENSRNOG00000006599 ENSRNOT00000008621 3 1 1 60 6 103616318 103616337 CATGTTCATCAGGAACACCA 58 103616277 103616297 CTCAGAGTGAAACTCCTCTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sh2d4b ENSRNOG00000042623 ENSRNOT00000032309 1 1 1 80 16 17702554 17702572 TACAGCTTTCTGGGAGTGG 59 17702614 17708309 GGTGATGATTTCCTCCTTGTG 59 NA Rattus norvegicus 81 Testin ENSRNOG00000018028 ENSRNOT00000024467 3 1 1 85 17 4217544 4217567 GGATCATCAGTTTCTTTATGTCCC 60 4217608 4217817 CACAATGACCCTGATTCTTCAC 60 NA Rattus norvegicus 81 Cpeb3 ENSRNOG00000020689 ENSRNOT00000047387 2 1 1 80 1 255727190 255728356 ATCGATGAAGATGAGATCACTG 58 255727131 255727150 CTTGCTCTCCGCTTTATGAG 59 NA Rattus norvegicus 81 AABR07064667.1 ENSRNOG00000004163 ENSRNOT00000005511 1 1 1 60 6 89932799 89932819 ATGGTCTGGAATTCTATGTGG 58 89932759 89932778 CATTTCTTGTCTGCAATGCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trpa1 ENSRNOG00000007354 ENSRNOT00000009874 3 1 1 80 5 3823982 3824375 TGAATTTCCAAGATGCCTTCAG 59 3824415 3824434 GGTAATTGATGTCTCCCAGC 59 NA Rattus norvegicus 81 Msl2 ENSRNOG00000023021 ENSRNOT00000039593 2 1 1 60 8 109456212 109456230 GCTCTTGCCTTACTTCCGA 60 109456254 109476812 ATCTTGAAGCAAATGCCCG 59 NA DesignNoJunction Rattus norvegicus 81 Msl2 ENSRNOG00000023021 ENSRNOT00000039593 3 1 1 62 8 109456210 109456228 AGGCTCTTGCCTTACTTCC 59 109456254 109476812 ATCTTGAAGCAAATGCCCG 59 NA DesignNoJunction Rattus norvegicus 81 Pigg ENSRNOG00000049895 ENSRNOT00000072386 3 1 1 80 14 2432101 2432985 CACTGTTGTCAAAGGACAGAG 59 2432041 2432060 TCCCTGTTTCAGACATTCCA 59 NA Rattus norvegicus 81 Acbd4 ENSRNOG00000003108 ENSRNOT00000004163 3 1 1 86 10 91189375 91189731 CACCTCCAAGTCCAGAGTC 59 91189781 91189799 CCAACTCTGGCTCTAGCTG 60 NA Rattus norvegicus 81 Alg10 ENSRNOG00000014511 ENSRNOT00000019672 1 1 1 80 7 131331118 131331136 ATGGACGAGATCTTCCACC 59 131331177 131332564 AATCATAGGATCCCACTGTGAC 60 NA Rattus norvegicus 81 Ptchd4 ENSRNOG00000012708 ENSRNOT00000016940 3 1 1 80 9 21275943 21275963 ATCTTCTTCATCACTGATGGG 58 21142694 21275902 TCCTTTAGTTCCATGACCCA 58 NA Rattus norvegicus 81 Fmc1 ENSRNOG00000005618 ENSRNOT00000007544 3 1 1 61 4 66276985 66277004 CTACCGGTACCTGGTTAAGG 59 66283725 66283744 CTCTGCACAACTTCTCACTG 59 NA DesignNoJunction Rattus norvegicus 81 LOC687913 ENSRNOG00000032170 ENSRNOT00000046737 2 1 1 81 1 100205108 100205126 CATGTTCCTCTCCTTCCGA 59 100204591 100205063 CACAATGCCAATGCTGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Inhbc ENSRNOG00000007700 ENSRNOT00000010240 1 1 1 183 7 70661219 70661237 AAAGCATCCTGGACAAGCT 60 70649565 70661072 TTGATGTTGGAGAGGCCTG 60 NA Rattus norvegicus 81 Rcan3 ENSRNOG00000018576 ENSRNOT00000025051 2 1 1 81 5 153777797 153781866 GTCCAAGAGCAGAAGGAGAG 60 153777735 153777754 GAAAGCTCTTGAACAGCTGG 60 NA Rattus norvegicus 81 Slc29a1 ENSRNOG00000019752 ENSRNOT00000026831 2 1 1 80 9 17793348 17793367 CTGGCTCATCTTCTTTGTCC 59 17793408 17793540 CTTGTGAAATACTGGGTTGCT 59 NA Rattus norvegicus 81 Ptprk ENSRNOG00000047605 ENSRNOT00000020988 3 1 1 80 1 17787825 17789720 AGTTATCCTTGCGATAAGTCTC 58 17787766 17787785 CTGAAATGTAGCATTCTGCC 57 NA Rattus norvegicus 81 LOC501180 ENSRNOG00000018559 ENSRNOT00000025029 3 1 1 60 9 93445365 93445387 CTCCATGACTACATCAACATCTG 59 93445406 93445425 GCTAGGATTTGGAGTACCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stac ENSRNOG00000008865 ENSRNOT00000011780 1 1 1 80 8 119829437 119829558 CTGGTGGAAAGGAAAGATTCAG 59 119829378 119829401 ATCTTCTCATGCTCTTCTACTCTC 60 NA Rattus norvegicus 81 Jph1 ENSRNOG00000006110 ENSRNOT00000008153,ENSRNOT00000085564 2 2 2 87 5 1500128 1500149 AGAAGTCTGAACTTGCTATACC 58 1500197 1506534 GAATTAGGGCCGGAATTGG 59 NA Rattus norvegicus 81 Trpm7 ENSRNOG00000057806 ENSRNOT00000077398 2 1 1 80 3 119330272 119330292 TATACCAAGCTCCAAAGACCC 60 119323221 119326273 CGACCACAGAAACATCTGAC 59 NA Rattus norvegicus 81 Med11 ENSRNOG00000019384 ENSRNOT00000085810,ENSRNOT00000026335 2 2 2 173 10 57057749 57057913 CAGGAACAGCAATCCTGGA 60 57058794 57058812 AAGAATAGCTGGAGCCCTC 59 NA DesignNoJunction Rattus norvegicus 81 Slc16a1 ENSRNOG00000019996 ENSRNOT00000027234 1 1 1 83 2 207119543 207119561 TATTCAGTGCAACGACCAG 58 207119608 207122617 TACTGCTGATAGGACCTCC 58 NA Rattus norvegicus 81 Camlg ENSRNOG00000021911 ENSRNOT00000037088 3 1 1 86 17 9524390 9529190 TTCCTAAGGGTGAGAAGAAGG 59 9524324 9524342 ACCGGTTTATCACCTCAGC 60 NA Rattus norvegicus 81 Spata31d1d ENSRNOG00000027014 ENSRNOT00000039803 1 1 1 81 17 5321194 5321964 AAGGAATCAGAAAGCAACAGG 59 5322566 5322586 GCTTCTCCGTGTAAGTTTCTG 59 NA Rattus norvegicus 81 Anapc7 ENSRNOG00000001283 ENSRNOT00000001729 1 1 1 80 12 39627067 39627085 TGTCCGTGTGGATTAAAGC 58 39625009 39627023 TCTCTAGCGAACAGATGGT 58 NA Rattus norvegicus 81 Bckdk ENSRNOG00000019485 ENSRNOT00000078578,ENSRNOT00000026466 1 2 2 80 1 199353298 199353392 GACTTCCCTCCGATCAAGG 60 199353434 199353454 ATCCTTGTGGTCATCTAGCAG 60 NA Rattus norvegicus 81 Rbm25 ENSRNOG00000002874 ENSRNOT00000003834 2 1 1 80 6 107156305 107156324 CTTGAGGAAATCAGGCAACG 60 107156367 107157796 AGCCTCTTGTTCCATCCTC 59 NA Rattus norvegicus 81 LOC100362054 ENSRNOG00000031178 ENSRNOT00000045266 2 1 1 87 1 67341084 67341102 GAAGTGGAAATCCTGTGGC 59 67341153 67350520 AACATGGACCATAGCAGGA 58 NA Rattus norvegicus 81 Slc35f2 ENSRNOG00000009014 ENSRNOT00000080227,ENSRNOT00000066222 3 2 2 80 8 58386691 58390041 CCTATTCGAGTATAAGTTCTCAGGA 60 58390076 58390097 GTGGAACAGTACAAGATGAAGC 60 NA Rattus norvegicus 81 Clip1 ENSRNOG00000001247 ENSRNOT00000001685,ENSRNOT00000078530,ENSRNOT00000088002 3 3 4 80 12 38395616 38399705 GTTAGAAGACACTAGGGTGG 57 38399748 38399766 TGTACTCTCAACGCTAGGT 58 NA Rattus norvegicus 81 Clip1 ENSRNOG00000001247 ENSRNOT00000083261 1 1 4 172 12 38385159 38385177 TTGGCTTCCCTTCTACCAC 59 38385312 38386227 GGATGCAAATAGTCCTGTCC 59 NA Rattus norvegicus 81 Clip1 ENSRNOG00000001247 ENSRNOT00000083261 3 1 4 174 12 38385157 38385175 GATTGGCTTCCCTTCTACC 58 38385312 38386227 GGATGCAAATAGTCCTGTCC 59 NA Rattus norvegicus 81 Gprc5a ENSRNOG00000008412 ENSRNOT00000011134 2 1 1 80 4 168846205 168846224 CTCAACTCATGAAGCAGAGC 59 168846266 168850443 CCATCTCCTCAAGACCTTGG 60 NA Rattus norvegicus 81 Olr982 ENSRNOG00000002333 ENSRNOT00000003174 1 1 1 60 7 4216314 4216334 GTGACTCCAACATCATTGACC 59 4216274 4216292 CAAGAGATGAGCAGCAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_1739.1 ENSRNOG00000051318 ENSRNOT00000076911 3 1 1 60 1 167654481 167654501 ACAGTCAAGTCTGAGAATGGG 60 167654523 167654541 CCTGGAAGATGGTGATGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mtmr4 ENSRNOG00000007496 ENSRNOT00000009943 2 1 1 80 10 74891184 74891532 AAATCTTCAGGTACCCTTCAC 58 74891574 74891592 ATTGCAATGAGGGCATCAG 59 NA Rattus norvegicus 81 Col7a1 ENSRNOG00000020579 ENSRNOT00000027994 3 1 1 80 8 117704010 117704031 ACTGTTAGTGGATGAACCTCTG 60 117704072 117704177 ATCATCACCTTGAGCCCAG 60 NA Rattus norvegicus 81 Chst15 ENSRNOG00000016267 ENSRNOT00000022157,ENSRNOT00000066711 2 2 2 80 1 204267470 204271694 ATGAATAGGATCATTATCGGAGAGG 60 204267414 204267435 GCTGTTGTCATAGAAGAAGGTC 59 NA Rattus norvegicus 81 Defb18 ENSRNOG00000039650 ENSRNOT00000060803 1 1 1 81 9 24467828 24467846 TTTCTGTGTCCTGTGGTCC 60 24467111 24467130 CCAACCAGGAAACATTTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Tmem19 ENSRNOG00000003985 ENSRNOT00000090560,ENSRNOT00000005310 3 2 2 80 7 58340392 58342734 GCACCTATTATGGTAGCTTGC 59 58340332 58340353 TACAGGAGATCACAACAGAGAC 59 NA Rattus norvegicus 81 Hectd3 ENSRNOG00000018363 ENSRNOT00000024737 3 1 1 80 5 135862678 135862700 GTCTGTGTATTAGAGGACATGAC 59 135862737 135863162 ATCTATCCCATCATCTCGACAC 59 NA Rattus norvegicus 81 Tada1 ENSRNOG00000003816 ENSRNOT00000005090,ENSRNOT00000058689 3 2 2 80 13 84591534 84591553 GGTTCAAGCAGAAGATCAGC 59 84591594 84591790 TGTGAGAATGGACATTGTCCT 60 NA Rattus norvegicus 81 Tcf21 ENSRNOG00000016700 ENSRNOT00000022798 2 1 1 159 1 23907246 23907264 TCAAGACTACCCTTCCCTG 58 23907387 23909033 ATAAAGGGCCAAGTCAGGT 59 NA Rattus norvegicus 81 Clic5 ENSRNOG00000047218 ENSRNOT00000073667,ENSRNOT00000079517 2 2 2 82 9 19126819 19134319 TGTGGTCAAGATTGTGGCT 60 19126755 19126773 CATTCTTGAGGTACCGCCA 60 NA Rattus norvegicus 81 Pid1 ENSRNOG00000029735 ENSRNOT00000041550 1 1 2 81 9 91668213 91674222 TTGAGATGGTCACGTATCTGG 60 91668152 91668170 TCAATGACTGGCTTCTCGG 60 NA Rattus norvegicus 81 Rnf121 ENSRNOG00000020175 ENSRNOT00000027321 3 1 1 80 1 167134142 167134161 TTATTGCTACCTTGGTGGTG 58 167119066 167134103 GGGTCACCATATTATAAGAACGG 59 NA Rattus norvegicus 81 Tmem107 ENSRNOG00000006519 ENSRNOT00000008787 3 1 1 83 10 55654401 55654501 GACAACCAACTGGTAGCAG 59 55654548 55654566 CATGGAGACTCCTGAGAGG 59 NA Rattus norvegicus 81 Akp3 ENSRNOG00000058652 ENSRNOT00000080897,ENSRNOT00000083137 2 2 2 80 9 94230655 94230796 GACGTATCTCATGGGCCTC 60 94230839 94230858 TTCAGAGATGGGTCCATCAG 59 NA Rattus norvegicus 81 Fam46a ENSRNOG00000010240 ENSRNOT00000056937 1 1 1 80 8 92940149 92941195 CTCTCAAGGAAGCGTATGTG 59 92940088 92940108 TGTTTGACAGGGATATAAGGC 58 NA Rattus norvegicus 81 Atr ENSRNOG00000010027 ENSRNOT00000049967 1 1 1 80 8 103753243 103753262 TGAATGGGTGAACAACACTG 59 103753302 103757299 TTTCCTGTCATATACACTCCCT 59 NA Rattus norvegicus 81 Atr ENSRNOG00000010027 ENSRNOT00000049967 3 1 1 80 8 103727993 103728013 CATGAAAGTATTGGCTTGCTG 58 103728055 103729383 ATGAATGATCTGGTCCGGT 59 NA Rattus norvegicus 81 AABR07065656.2 ENSRNOG00000047577 ENSRNOT00000072566 1 1 1 116 6 138948234 138948252 AATCCCGACTGAGCATCAG 60 138948042 138948156 TCTGAAGTGATCTGTGTCTGG 60 NA Rattus norvegicus 81 Dnah1 ENSRNOG00000026914 ENSRNOT00000066508,ENSRNOT00000035009 1 2 2 80 16 7399575 7399881 GAGATTGAGAGGAGGAAACAG 58 7399515 7399534 CTTGTTAGAGTCAATGCCCT 58 NA Rattus norvegicus 81 Myl2 ENSRNOG00000030848 ENSRNOT00000050368 3 1 1 84 12 39957151 39957171 AAGAATGACCTAAGGGACACG 60 39954982 39955004 CTGGAGCCTCGATCATCTC 60 NA Rattus norvegicus 81 Ikzf2 ENSRNOG00000027430 ENSRNOT00000057849,ENSRNOT00000087779 2 2 2 80 9 76766287 76767143 ATGGCTACATAACGTGTGAC 58 76766226 76766244 GTGTGCTTGAAGTGAGGTC 59 NA Rattus norvegicus 81 Bnip2 ENSRNOG00000056024 ENSRNOT00000087382,ENSRNOT00000081072 1 2 2 80 8 76407609 76407627 TGAAGGTGGAGAAGTTGAC 57 76407670 76409499 GGAAGATCATCTTCCCACTC 58 NA Rattus norvegicus 81 LOC297568 ENSRNOG00000042228 ENSRNOT00000041957 3 1 1 80 4 154810949 154811067 GGGAAACACTTAGTCCAAACC 59 154810296 154810319 CTTTAGGTGGTGGATCTTTATGTG 60 NA Rattus norvegicus 81 Krt28 ENSRNOG00000011846 ENSRNOT00000044206 3 1 1 86 10 87282587 87282685 TGGTTCCAAGAGAAGAGCG 60 87282519 87282537 CTCTGTCAGCTCAGTCCTG 60 NA Rattus norvegicus 81 C1qtnf6 ENSRNOG00000007300 ENSRNOT00000009551 3 1 1 97 7 119748143 119749936 CCTGAAAGGTGACAAAGGG 58 119748064 119748083 CTTTGATACCCTGAGAGCCA 59 NA Rattus norvegicus 81 Ggta1 ENSRNOG00000019179 ENSRNOT00000025983,ENSRNOT00000085756,ENSRNOT00000082008 3 3 3 87 3 14621469 14637126 GTTCAATCCAAAGAACCGC 58 14621400 14621418 CAGAGCTGTGTCGTAAGTG 58 NA Rattus norvegicus 81 Pkdrej ENSRNOG00000029591 ENSRNOT00000041057 2 1 1 60 7 126696654 126696674 GGTGTATTATTCCTATGGCGT 58 126696614 126696635 GAAATAGAACTCATACCCTCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0862.1 ENSRNOG00000057028 ENSRNOT00000078328 2 1 1 60 10 86337206 86337224 GCTTTCTGTACAGACTCGG 58 86337246 86337266 CACATACCATAGTGAGGTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r67 ENSRNOG00000031928 ENSRNOT00000061889 2 1 1 80 14 1321540 1321559 AGAAAGAAACAGCAGACTGC 59 1321597 1322769 GTTCCATATCTGCTGTATCATTGG 60 NA Rattus norvegicus 81 Ctnnd1 ENSRNOG00000030790 ENSRNOT00000081400,ENSRNOT00000064009 1 2 2 80 3 72021997 72022017 TGTCTGATTATGGTACTGCCC 60 72018387 72021959 CAATCATGTCTTCATAGCTCCTG 59 NA Rattus norvegicus 81 Ctnnd1 ENSRNOG00000030790 ENSRNOT00000081400,ENSRNOT00000064009 3 2 2 80 3 72016570 72016591 ACCTAATGAAGACTGTAAGCCA 59 72015402 72016532 CTTACATTTCTAAGGCAGCCAG 60 NA Rattus norvegicus 81 Paxbp1 ENSRNOG00000002036 ENSRNOT00000002800 3 1 1 80 11 31205409 31205427 TGGAGAGCAAGACGAAGAG 59 31204495 31205365 CTTGCTTGAACCTGAGGGA 60 NA Rattus norvegicus 81 B3gnt7 ENSRNOG00000018267 ENSRNOT00000024578 1 1 1 202 9 93326405 93326423 AAGGGTTAACCTACCTGGG 58 93328009 93328028 GCATACACTCTTGTAGAGGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mir7b ENSRNOG00000049078 ENSRNOT00000071390 2 1 1 62 9 10812501 10812521 ATGCTATGTGGAAGACTTGTG 58 10812459 10812477 CTGGCTGTGACTTGTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhdc7b ENSRNOG00000032419 ENSRNOT00000040769 1 1 1 60 7 130358103 130358121 AAGAAATAACCCAGCAGCC 58 130358145 130358163 CTGTCTGTAGGTCTGGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aktip ENSRNOG00000011956 ENSRNOT00000060865 1 1 1 80 19 17297720 17297738 TTCACCCGCTAGTTGATCC 60 17297781 17297880 TATGGTTATGGTTCCGCCTC 60 NA Rattus norvegicus 81 LOC685363 ENSRNOG00000040060 ENSRNOT00000061601 2 1 1 89 11 28973569 28973588 CTACTATGGCTGTGGCTACC 60 28973475 28973518 CCATAACCACAGCCATAGAG 58 NA DesignNoJunction Rattus norvegicus 81 Ttc23 ENSRNOG00000013877 ENSRNOT00000078707,ENSRNOT00000073355 2 2 2 80 1 128686482 128686503 GACGTTCTTGTATGGATCACAG 59 128686543 128687353 GTCTCGGAGATCTTGGACAG 60 NA Rattus norvegicus 81 Exosc6 ENSRNOG00000018582 ENSRNOT00000025179 2 1 1 121 19 43191777 43191795 CTACCCTCGTGCTCAACTC 60 43191674 43191693 GATCGTACATCTCCACTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adamts10 ENSRNOG00000008857 ENSRNOT00000086336,ENSRNOT00000011849 1 2 2 80 7 18416360 18416379 ACGTAGTATACAAGCGTTCC 58 18416420 18417752 CCTTCCATGGTTTCTCATCTC 59 NA Rattus norvegicus 81 Rbms1 ENSRNOG00000008482 ENSRNOT00000011682,ENSRNOT00000087439 1 2 2 80 3 46832009 46842343 CTCAGATGGCAAAGCAACAG 60 46831948 46831969 GTTCTTGTTCATCCATGGACAG 60 NA Rattus norvegicus 81 Ms4a18 ENSRNOG00000042330 ENSRNOT00000067235 2 1 1 85 1 227055787 227055805 CCTTGACTGGAATCCTCGT 59 227054399 227055743 GGTTACCTTCATAGAACACATCAG 59 NA Rattus norvegicus 81 Ms4a18 ENSRNOG00000042330 ENSRNOT00000067235 3 1 1 85 1 227054352 227054371 CTGGAATTCATCCTCACCTG 58 227051428 227054305 GGGAACACTGTCATGTTCTC 59 NA Rattus norvegicus 81 AABR07065705.3 ENSRNOG00000059199 ENSRNOT00000075502 2 1 1 134 6 139747393 139747411 CTCAAATCCCGACTGAGCA 60 139746906 139747295 AACTGCAGTCTGGACTTCC 60 NA Rattus norvegicus 81 Slc21a4 ENSRNOG00000010388 ENSRNOT00000039877,ENSRNOT00000000026,ENSRNOT00000015112,ENSRNOT00000051461,ENSRNOT00000049303 1 5 5 80 4 176266360 176266383 CTATCAGGATTTCTCAGTATCCTC 58 176262970 176266323 TTCAGACTTGATACACCTCAG 57 NA Rattus norvegicus 81 Zc3h8 ENSRNOG00000017647 ENSRNOT00000023845 1 1 1 80 3 121485528 121485546 GTTGAAGAGGCACAGACAG 59 121480330 121485486 AAGGTGCTTAAACTTCTTGGG 59 NA Rattus norvegicus 81 Sin3b ENSRNOG00000048622 ENSRNOT00000074814 1 1 1 80 16 18849953 18852170 CACACCTACCAGAAGGAGC 60 18849891 18849910 CACCTCTGTGAAGACTTCCT 59 NA Rattus norvegicus 81 Otp ENSRNOG00000010560 ENSRNOT00000014036 2 1 1 111 2 24548141 24548159 GAATTGGAGAGGAGCTTCG 58 24548234 24554168 GATTCTGGAACCAGACCTG 58 NA Rattus norvegicus 81 Pus7l ENSRNOG00000022570 ENSRNOT00000029097 3 1 1 83 7 135795543 135799545 AGTGTATACAGCTTTCACCCT 59 135795480 135795498 ATAACGCCAAGTTGGATGG 58 NA Rattus norvegicus 81 Ppap2b ENSRNOG00000008116 ENSRNOT00000011237 1 1 1 80 5 124751512 124751531 CTACAAACACCATCCTAGCG 59 124751572 124763663 GACACGAAGAACACTATGCAG 59 NA Rattus norvegicus 81 Rarg ENSRNOG00000012499 ENSRNOT00000017096,ENSRNOT00000016801 3 2 2 80 7 143845724 143846357 TCCAAGGAAGCTGTAAGGA 58 143845662 143845681 CAGTTCGTAGTTGTCTGGTG 59 NA Rattus norvegicus 81 Otud5 ENSRNOG00000008764 ENSRNOT00000006233 3 1 1 80 X 15472594 15472612 CCTCTTGTGTCCCTCTACC 59 15472253 15472551 ATCATTCAGACCAAAGGCAG 58 NA Rattus norvegicus 81 Zfp870 ENSRNOG00000030416 ENSRNOT00000042638 3 1 1 92 7 15163537 15163748 CCTCTATAGGAAACAAGTTGAGC 59 15160879 15160898 AGAACTTCTCCACCAGTTGG 60 NA Rattus norvegicus 81 Plcd1 ENSRNOG00000032238 ENSRNOT00000045493 1 1 1 80 8 127758132 127758241 AAGATCTTCAGGGAATGTGAC 58 127758072 127758091 GGTCAGCATCTTGTAGAAGG 58 NA Rattus norvegicus 81 Plac8 ENSRNOG00000002217 ENSRNOT00000003012 1 1 1 103 14 10706420 10709847 GCATTCCTGGGTCTATTTGTG 59 10709912 10709930 GTTCATGGCTCTCCTCCTG 60 NA Rattus norvegicus 81 Cic ENSRNOG00000056118 ENSRNOT00000091357 3 1 1 81 1 82161164 82161280 TGACTCTGTGGACAACAGG 59 82161324 82161343 CTCCTCTGGTCTAAACTCGG 59 NA Rattus norvegicus 81 Hs6st1 ENSRNOG00000014516 ENSRNOT00000019966 2 1 1 80 9 42620284 42620303 GAACTCACCAACTGTGTTCC 59 42620343 42656274 GATGTAGTAGAACTTTCTGGGC 59 NA Rattus norvegicus 81 Tmem200c ENSRNOG00000049880 ENSRNOT00000072916 2 1 1 163 9 117044772 117044790 GGTTCTTTGTGTCTCCCGA 60 117047692 117047710 TATCCTCAGTAGGCCACCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Taok3 ENSRNOG00000001138 ENSRNOT00000089043,ENSRNOT00000001503 3 2 2 80 12 45046755 45048341 ACTTAAAGGCCATGGAAATGC 60 45046695 45046715 TGAGTGCTTTGTACTGTTTGG 59 NA Rattus norvegicus 81 AABR07042903.1 ENSRNOG00000030174 ENSRNOT00000043480 3 1 1 89 19 14346724 14346743 CCAAGACCTACAGCTACCTG 60 14346799 14346832 GAGACTCTGGTGTGGTCAG 59 NA Rattus norvegicus 81 Myom1 ENSRNOG00000057701 ENSRNOT00000085362 1 1 1 80 9 119377738 119377756 AATGTCCATGCAAACCCAG 59 119377798 119380049 GAAGTCACACTTGCTGATCTC 59 NA Rattus norvegicus 81 Sox15 ENSRNOG00000012155 ENSRNOT00000016177 1 1 1 80 10 56260799 56261389 TGGCAGTTACACCTCTTCC 59 56261433 56261451 CCTTGGAGCCTAGGATCAC 59 NA Rattus norvegicus 81 Fnbp1 ENSRNOG00000008258 ENSRNOT00000042798,ENSRNOT00000011224 1 2 2 80 3 9865831 9868323 CTCTACACCTTTGAAGGTCAG 58 9865771 9865789 TTTGTCCTCCTCAATCACG 58 NA Rattus norvegicus 81 Dlec1 ENSRNOG00000032085 ENSRNOT00000052275 1 1 1 80 8 127807265 127807283 AGAACACCACTTCCACCAG 60 127807325 127808426 GGAACATCCCAAGTCCTAGAG 60 NA Rattus norvegicus 81 Enc1 ENSRNOG00000016541 ENSRNOT00000022144 2 1 1 110 2 28054718 28054736 TAACCACGGTTCCCTACTC 58 28054810 28058631 TGTCAGAGTGAGCTCACTC 59 NA InUTR Rattus norvegicus 81 Trpm8 ENSRNOG00000019035 ENSRNOT00000025879 1 1 1 80 9 95448771 95448794 GAAGAACTGGAAGATTATCCTGTG 59 95448832 95449465 ATGGGCTTCTTCCTAAACGA 59 NA Rattus norvegicus 81 Cand2 ENSRNOG00000010473 ENSRNOT00000014217,ENSRNOT00000086660,ENSRNOT00000014207 3 3 3 80 4 147705739 147705757 ATCACTGCAGTCAAGTTCC 58 147705800 147708191 CATGAACTCTGCAATGAAGC 58 NA Rattus norvegicus 81 Mia ENSRNOG00000001499 ENSRNOT00000002050 2 1 1 97 1 83993039 83993143 AGTGTAGCCATCCTATCTCC 58 83992961 83992979 GACATATACCACTTGGCCC 58 NA Rattus norvegicus 81 Timd4 ENSRNOG00000038894 ENSRNOT00000059448 2 1 1 80 10 31890027 31911274 CGTCTTTCCGTTACCTTTCAG 59 31911316 31911334 CCTCAATCTGCCAAGACAC 59 NA Rattus norvegicus 81 Plbd1 ENSRNOG00000008933 ENSRNOT00000011930 3 1 1 80 4 170599430 170609891 CACAGCTCTACACATGTATGAC 59 170599371 170599389 TGCACTTTCTTCACGATGG 59 NA Rattus norvegicus 81 Atg16l1 ENSRNOG00000017913 ENSRNOT00000080482,ENSRNOT00000024445 2 2 2 80 9 94897131 94897153 AGTCATTGTAGATGAGACCTCAG 60 94897193 94897798 AGTCGCTTAGTAGCTGCTC 59 NA Rattus norvegicus 81 Tmem5 ENSRNOG00000004421 ENSRNOT00000006051 3 1 1 80 7 64329774 64330614 TTCTGCAAGAGAACAGTGG 58 64329712 64329731 AGGTCACTATGAAGCAAAGC 58 NA Rattus norvegicus 81 Pitpnm2 ENSRNOG00000029260 ENSRNOT00000048528,ENSRNOT00000084587,ENSRNOT00000091084 2 3 3 89 12 37880288 37881532 GCTGATAACAGACATCATCGAC 59 37881582 37881600 ATCGACTGGAAGAGCTTGG 60 NA Rattus norvegicus 81 Lonp2 ENSRNOG00000015162 ENSRNOT00000020770,ENSRNOT00000087660,ENSRNOT00000048345 1 3 3 80 19 21466181 21466200 TTTGGATGAGGTTGACAAGC 59 21457745 21466139 TGTTCAGGATCCAACACCTC 60 NA Rattus norvegicus 81 AC119011.1 ENSRNOG00000050497 ENSRNOT00000068195 2 1 2 88 7 117953564 117954779 GATTTGCCAGACAGACTCC 58 117954831 117954849 CAAAGTCAGGAATCTGCCT 57 NA Rattus norvegicus 81 Ifngr2 ENSRNOG00000002032 ENSRNOT00000002779 2 1 1 80 11 31709512 31709531 CAAAGCCGGGTGAAATACTG 60 31709569 31710991 CTGATCTGGGTCCTTTAAATACTC 59 NA Rattus norvegicus 81 Ptges3 ENSRNOG00000002642 ENSRNOT00000003787 3 1 1 98 7 2492580 2492600 CTTAATTGGCTTAGTGTGGAC 57 2492658 2494725 ATCCATCATCTCAGAGAAACG 58 NA Rattus norvegicus 81 AABR07051535.1 ENSRNOG00000049499 ENSRNOT00000073229 2 1 1 91 3 16590281 16590505 TATGGGTCTCTGGTACATTTGG 60 16590555 16590575 GCAGCTCATAGTCACTTTCTC 59 NA Rattus norvegicus 81 Ngp ENSRNOG00000024330 ENSRNOT00000029755 2 1 1 63 8 118662498 118662516 CTAAGTGCCACTCCACCTC 60 118663255 118663274 TAATCCTGAACTCGAGTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Ngp ENSRNOG00000024330 ENSRNOT00000029755 3 1 1 64 8 118662498 118662516 CTAAGTGCCACTCCACCTC 60 118663255 118663275 TTAATCCTGAACTCGAGTGGG 60 NA DesignNoJunction Rattus norvegicus 81 Baz2a ENSRNOG00000053881 ENSRNOT00000079383 1 1 1 80 7 2546721 2546739 GAGGTGGTAGTGGAGAAGG 59 2546778 2546891 GATCTCATAGGATATCTCAGTCGT 59 NA Rattus norvegicus 81 Hspa12a ENSRNOG00000018019 ENSRNOT00000024548 1 1 1 80 1 279956649 279956667 GCCCTTCTCCTTCATTGAC 58 279952070 279956605 AAGTCCACATTGCTCTTCC 58 NA Rattus norvegicus 81 Irx3 ENSRNOG00000011533 ENSRNOT00000015583 2 1 1 109 19 15839664 15839872 TGGAACAGATCGCTGTAGTG 60 15839104 15839123 ATAAGACCAGAGCAGCATCC 60 NA Rattus norvegicus 81 Irx3 ENSRNOG00000011533 ENSRNOT00000015583 3 1 1 112 19 15839664 15839872 TGGAACAGATCGCTGTAGTG 60 15839101 15839120 CTGATAAGACCAGAGCAGCA 60 NA Rattus norvegicus 81 Csf1 ENSRNOG00000018659 ENSRNOT00000025222,ENSRNOT00000081835 3 2 3 97 2 210547142 210550355 CTTCTTCGACATGGATGGG 58 210547063 210547081 CCCAATCATGTGGCTACAG 58 NA Rattus norvegicus 81 Ccdc17 ENSRNOG00000023216 ENSRNOT00000090852,ENSRNOT00000034464 2 2 2 80 5 135445040 135445059 TACAGATGCCCAGACATTGG 60 135445099 135445456 GATGAACTGGACATCATTGGTG 60 NA Rattus norvegicus 81 Fcrlb ENSRNOG00000003135 ENSRNOT00000004181 2 1 1 85 13 89290697 89291059 GAAAGCTGCTACTCTGGAG 58 89290630 89290648 ATCTCAGGGTTACTCGCTC 59 NA Rattus norvegicus 81 Tomm40l ENSRNOG00000003398 ENSRNOT00000004641 3 1 1 80 13 89593161 89593184 AATATCGAGGAGATGACTACACAG 60 89592809 89593126 GAGCAACCATAATCACTGATTCC 60 NA Rattus norvegicus 81 Gca ENSRNOG00000007359 ENSRNOT00000009697 2 1 1 80 3 48655097 48655117 CATTGACCAGGATCAAAGTGG 59 48655159 48658555 GGACTCAACCTGTAACCCA 59 NA Rattus norvegicus 81 Dscr3 ENSRNOG00000001681 ENSRNOT00000002284 2 1 1 80 11 34771466 34776026 GTCAACATTCAGTATACTCTGCG 60 34771408 34771429 GATGAATTCACAGGTCTTGGTC 59 NA Rattus norvegicus 81 Zap70 ENSRNOG00000016995 ENSRNOT00000023036 1 1 1 80 9 43351696 43352722 CTGCTGGATATACAAGTGGG 58 43352764 43352783 GCCATGCTGTAGTAATAGGT 57 NA Rattus norvegicus 81 Efcab9 ENSRNOG00000004142 ENSRNOT00000005509 1 1 1 81 10 17415168 17415186 GTTGAGAAACGTGAAGGCT 58 17409688 17415126 GAACAACACATCATTCAAGGTG 59 NA Rattus norvegicus 81 Slc35g3 ENSRNOG00000014519 ENSRNOT00000019674 1 1 1 87 10 56367857 56368323 AAGAAGAGATGGCTGCCAG 60 56367788 56367806 GAAGTGAGGCTGGATGGAG 60 NA InUTR Rattus norvegicus 81 Cacna1c ENSRNOG00000007090 ENSRNOT00000051846,ENSRNOT00000041571,ENSRNOT00000052017 2 3 3 80 4 150647273 150649531 CCTGCTCTCCACAGATATACTC 60 150647214 150647232 ATCTCCCTCTTGTCCTCCT 59 NA Rattus norvegicus 81 Spryd4 ENSRNOG00000003127 ENSRNOT00000004173 1 1 1 80 7 2623737 2623755 TTGTTGGAACTTGTACCGC 59 2623332 2623695 AGTTTGAAACTGATGCCTCTC 59 NA Rattus norvegicus 81 S100z ENSRNOG00000017998 ENSRNOT00000024202 2 1 1 81 2 25188937 25190372 CTCACAGAATTCCTCACATGTC 59 25188877 25188895 CGTTGTCCTTGTTAGCGTC 59 NA Rattus norvegicus 81 Sdcbp2 ENSRNOG00000009528 ENSRNOT00000012690 2 1 1 80 3 147091623 147092411 ACTCTCAGAGCTGTATCCA 57 147092454 147092473 TTCTTCTGAACTTCTTGGCT 57 NA Rattus norvegicus 81 Hsd3b7 ENSRNOG00000019080 ENSRNOT00000025933 3 1 1 91 1 199250222 199250662 GTCTACGTTGGCAATGTGG 59 199250717 199250735 CAGAAATACACCTGGCCAC 59 NA Rattus norvegicus 81 Ston1 ENSRNOG00000016688 ENSRNOT00000022370 3 1 1 82 6 12374560 12378092 AAACACAAGTCCCGATCAG 58 12378137 12378156 GATCCCAATCTGAAGGAACC 58 NA Rattus norvegicus 81 Kcnc2 ENSRNOG00000004077 ENSRNOT00000005690,ENSRNOT00000005773 1 2 2 80 7 55149591 55149611 TGTAACAGTACCCAGAGTGAC 59 55149650 55151645 GTCACCTGATAACACTGATCTG 59 NA Rattus norvegicus 81 LOC100910137 ENSRNOG00000001160 ENSRNOT00000001534,ENSRNOT00000079043 2 2 2 81 12 46989767 46989785 TTTCTCAAAGGAGACGGCT 59 46988297 46989724 CCTTGATTGCTTTCTGGACAC 60 NA Rattus norvegicus 81 Mtmr10 ENSRNOG00000016090 ENSRNOT00000021530 1 1 1 80 1 125157109 125157130 TGAAGAAACTGAAGAGAAGTGG 58 125157169 125157842 GAGTGTTTAAGGAAAGCCCTG 59 NA Rattus norvegicus 81 Ikbkap ENSRNOG00000016725 ENSRNOT00000022836 1 1 1 80 5 73525742 73526082 GCTTATACTCCAGATGCCGA 60 73525681 73525699 AGCCACTTCCGAATCTGAG 60 NA Rattus norvegicus 81 Ikbkap ENSRNOG00000016725 ENSRNOT00000022836 2 1 1 80 5 73510764 73510784 GGAAACCAGCAGTATTAGGAG 58 73509969 73510722 GATGACCTCGCAGATATCC 57 NA Rattus norvegicus 81 Exoc8 ENSRNOG00000019766 ENSRNOT00000026757 1 1 1 60 19 57647617 57647636 GCATCCTTCCTTTACGACAC 59 57647576 57647594 CCACACCTTCCTCAAACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tyw3 ENSRNOG00000028328 ENSRNOT00000032874 2 1 1 80 2 260880593 260881442 GAAAGATGACGTGATGGCAG 59 260880532 260880552 TGCACATGGAGGATAAATGGT 60 NA Rattus norvegicus 81 Psmd1 ENSRNOG00000017730 ENSRNOT00000024306,ENSRNOT00000089470 1 2 2 80 9 93105018 93105039 CATTGCGTTAGTGATGTATGGG 60 93105078 93106346 AGAATTGGGTCCTTATCACGA 59 NA Rattus norvegicus 81 Psmd1 ENSRNOG00000017730 ENSRNOT00000024306,ENSRNOT00000089470 3 2 2 80 9 93105018 93105038 CATTGCGTTAGTGATGTATGG 58 93105079 93106346 AGAATTGGGTCCTTATCACG 57 NA Rattus norvegicus 81 Abca1 ENSRNOG00000018126 ENSRNOT00000024564 1 1 1 80 5 69900684 69902138 GTCAGAAATCTGCATGGAAGAG 60 69900625 69900644 TCTCGGTAAACCTTCACCAG 60 NA Rattus norvegicus 81 Spcs3 ENSRNOG00000038933 ENSRNOT00000067375 2 1 1 88 16 40054500 40054519 AGGTGATAATCCAAAGCTGC 58 40054569 40055957 CATTCCTGTTTCCCTTGAGG 59 NA Rattus norvegicus 81 Frg1 ENSRNOG00000009846 ENSRNOT00000013078 3 1 1 80 16 53965153 53975307 TGTTTCAAGATGGGAAGATGG 58 53975349 53975367 TTGCTTCTATATCGCCTGC 58 NA Rattus norvegicus 81 Jph2 ENSRNOG00000008170 ENSRNOT00000010939 2 1 1 161 3 159754058 159754076 CAGAAGGCTGAGATTGCTG 59 159713797 159715484 CTTCTGATACTCCGGACCTG 59 NA Rattus norvegicus 81 Adamts17 ENSRNOG00000037080 ENSRNOT00000055877 1 1 1 80 1 127882799 127887874 GTGTTTGTGACCAGGACAG 59 127939763 127939781 CACGCCTCCTAAGTAAGCA 60 NA Rattus norvegicus 81 Plxnb1 ENSRNOG00000029510 ENSRNOT00000043345 1 1 1 80 8 117841211 117841231 CCGTGAACAGAGATCTTACCT 59 117841269 117841415 CAGGAACTTTCACAAGTGTAGTC 60 NA Rattus norvegicus 81 Zfp295 ENSRNOG00000001623 ENSRNOT00000041177 3 1 1 88 11 38446704 38446722 GAGAACTGTGAAGAGGGCA 59 38446046 38446652 TTGCCTTGCTCAAACTCCT 60 NA Rattus norvegicus 81 Rmt1 ENSRNOG00000013373 ENSRNOT00000017860 2 1 1 87 1 218374044 218374063 CATACACTGCAAAGTGGGAG 59 218373848 218373994 CAGAGCCTTTCTGTGTCCA 60 NA InUTR Rattus norvegicus 81 Cacna2d4 ENSRNOG00000008031 ENSRNOT00000010746 3 1 1 80 4 151304539 151305617 ATGTGTACAACAAAGACCCAG 59 151305657 151305677 GAAAGTTCTCCACAAACACAG 58 NA Rattus norvegicus 81 Cnbd2 ENSRNOG00000019992 ENSRNOT00000027086 3 1 1 80 3 152443946 152443965 TTTATGACTTGGTCGATGCG 59 152444007 152447776 GACACAGTTCTTCATCGCTG 59 NA Rattus norvegicus 81 Ssr3 ENSRNOG00000011148 ENSRNOT00000014912 3 1 1 81 2 156014439 156014457 CTCTGTTCCTGGTTCTGGT 59 156013405 156014397 ATGGACAGAATGTAGTTCACTG 58 NA Rattus norvegicus 81 Slc38a3 ENSRNOG00000016827 ENSRNOT00000023623 2 1 1 80 8 116413485 116414044 TCATCCTCTTCCTGTTCCT 57 116413423 116413441 TCCCAGAAGACTTGAGGAG 58 NA Rattus norvegicus 81 Gal ENSRNOG00000015156 ENSRNOT00000020425 2 1 1 80 1 218655042 218655060 CATTTAGCGACAAGCATGG 58 218654621 218654999 CAGCAACACTTCCTAGTCTC 58 NA Rattus norvegicus 81 LOC691311 ENSRNOG00000021364 ENSRNOT00000034129 1 1 1 80 12 47504266 47504962 TATCCCAGTGACGTTTCCA 58 47504204 47504223 GACAGACTCTTCGTCTTCCT 59 NA Rattus norvegicus 81 Kcnc4 ENSRNOG00000060988 ENSRNOT00000086420 3 1 1 88 2 210227736 210227754 AGAAACAAGAAGGCAGCTG 58 210221532 210227684 TCAACACTGCCTTCTTTCC 58 NA Rattus norvegicus 81 Nit1 ENSRNOG00000003881 ENSRNOT00000005194 1 1 1 80 13 89724460 89724479 CCGAGACATTACTCCTGTCC 60 89724295 89724417 AGATTCCACATTCCCTGGC 60 NA Rattus norvegicus 81 Plagl2 ENSRNOG00000010086 ENSRNOT00000090919,ENSRNOT00000068592 1 2 2 80 3 148714522 148717230 AAGCTGTATAGGCACATGG 57 148714460 148714480 CTTTCGGTGAAACATCTTGTC 58 NA Rattus norvegicus 81 Ephx3 ENSRNOG00000027319 ENSRNOT00000038961 2 1 1 80 7 14217181 14217359 TCTAACCCTCAGGAGTTCC 58 14217119 14217137 TGCAGAAATAGCATGAGGG 58 NA Rattus norvegicus 81 LOC100909568 ENSRNOG00000046372 ENSRNOT00000075032 1 1 1 60 7 8210186 8210206 GAAACCGAACAGTAACAACCT 59 8210225 8210246 ATTTGAAGCCGAATGTCATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col6a4 ENSRNOG00000031782 ENSRNOT00000047563 2 1 1 80 8 114750549 114751213 CCTTCGAGAATTGTAGGAGC 58 114750488 114750509 CAAAGTCTTCAGAAGAGATGGA 58 NA Rattus norvegicus 81 Mrpl30 ENSRNOG00000049330 ENSRNOT00000083245,ENSRNOT00000075242,ENSRNOT00000088544 2 3 3 85 9 44491554 44493588 CCAGATAAAGTATTTCAGCCTAGAC 59 44493628 44493649 GTAACAATGTGCAGTTTATGGG 58 NA Rattus norvegicus 81 Kiz ENSRNOG00000025141 ENSRNOT00000036527 2 1 1 80 3 141082937 141082957 GAAGCTGAAATGAAGAGGCTG 60 141082998 141105400 CATTGCATCCTTTGCTTGGT 60 NA Rattus norvegicus 81 Tekt1 ENSRNOG00000014973 ENSRNOT00000066740 1 1 1 80 10 58910604 58922193 GTGAACAAGAAACTTGAGCAG 58 58910544 58910564 CACAAGATGTTCGAGTTTGTC 58 NA Rattus norvegicus 81 Dcaf6 ENSRNOG00000003078 ENSRNOT00000004199 3 1 1 80 13 83651185 83653766 CTACTTACGAGATTATGACTGTACC 59 83651129 83651147 CAAACCACCTAACGGTTCC 59 NA Rattus norvegicus 81 Mov10 ENSRNOG00000012946 ENSRNOT00000018061 3 1 1 80 2 207283996 207284015 CCTACATCATCTTTGGGCCT 60 207283649 207283953 GCAAGTGCTTCACTACCTG 59 NA Rattus norvegicus 81 Wdfy3 ENSRNOG00000061121 ENSRNOT00000088047 3 1 1 80 14 9317976 9318330 AAACTTACAGGCTTGTGAAGAG 59 9318371 9318389 GGATGCAAGTGTTCTTCCA 58 NA Rattus norvegicus 81 Hnrnpr ENSRNOG00000011910 ENSRNOT00000015971 1 1 1 80 5 154676709 154676727 ACAGAGGAAGTATGGTGGG 58 154676770 154685233 CCTACAAAGACCTCTGTTCC 58 NA Rattus norvegicus 81 Cyb561d2 ENSRNOG00000021887 ENSRNOT00000031739,ENSRNOT00000082320 2 2 2 80 8 116296768 116297218 CTGGCTCCAGTCTATTCTCC 59 116296079 116296098 ACATCAGGAGTGCTTCAGTC 60 NA Rattus norvegicus 81 Emc10 ENSRNOG00000019532 ENSRNOT00000026445 3 1 1 146 1 100498354 100499928 ATTTGAGATTGGTGATGGCG 59 100497610 100497628 TAGAGGCCATTGACAGCAG 60 NA Rattus norvegicus 81 Crabp1 ENSRNOG00000023633 ENSRNOT00000031175 2 1 1 80 8 59344895 59344914 CGGAGATCAACTTCAAGGTC 58 59344957 59347503 CCCAAGTGGGTAAACTCCT 59 NA Rattus norvegicus 81 Amica1 ENSRNOG00000026702 ENSRNOT00000007588 2 1 1 80 8 49386759 49386778 ACAGAAGAGAAACCTGTGGA 59 49386816 49388151 GTAGTACAGCACGTATTCATTCTC 60 NA Rattus norvegicus 81 Psma4 ENSRNOG00000013493 ENSRNOT00000018173 1 1 1 80 8 59534583 59536451 AACTTAACGAGGACATGGCT 60 59536490 59536512 CAATGAGCCTGAGTTCATTAGTC 60 NA Rattus norvegicus 81 Pou2f1 ENSRNOG00000003581 ENSRNOT00000087096,ENSRNOT00000047488 1 2 2 80 13 84098996 84099014 TACCCTCACAGTCAACCCT 60 84087759 84098952 GTGGAGTCTGTAGTGCCTG 60 NA Rattus norvegicus 81 Rasal3 ENSRNOG00000006167 ENSRNOT00000066722 3 1 1 81 7 14406139 14406912 CCAATCCAGCTTCTCTTCAG 58 14406077 14406097 CTTGGAAATGAGAGGAGTGTG 59 NA Rattus norvegicus 81 Ptpn20 ENSRNOG00000020203 ENSRNOT00000027352 3 1 1 80 16 9946068 9946089 TGACTTCAAGTCTGGGTATGAG 60 9946128 9957742 ACACGGGTTGAATCATATGGA 60 NA Rattus norvegicus 81 Serpinb7 ENSRNOG00000002555 ENSRNOT00000003466 1 1 1 80 13 27345796 27345818 CTTGAGCTACAATATCATGGTGG 59 27345857 27353668 CAGCTTGCTTTCAATTTCGG 59 NA Rattus norvegicus 81 Mboat7 ENSRNOG00000054459 ENSRNOT00000078640 1 1 1 80 1 64109647 64113407 CCTACGTATTGAGGAGTGC 57 64113450 64113469 TGAAGCTTAGGTAGTAGCCA 58 NA Rattus norvegicus 81 Olr206 ENSRNOG00000049967 ENSRNOT00000074591 2 1 1 60 2 4800580 4800601 TCTCACTTCAGTTATCACTCCC 59 4800620 4800640 TATGGTGTTGTCTTTGAGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1ca ENSRNOG00000018708 ENSRNOT00000025282,ENSRNOT00000091680 1 2 2 87 1 219441020 219441543 ATGATGAATGCAAGAGACGA 57 219441593 219441611 TCTACAATGGCTGCAATGG 58 NA Rattus norvegicus 81 Smarcd2 ENSRNOG00000010557 ENSRNOT00000014508 1 1 1 80 10 94453441 94453459 GCCCAGATGAGTAACTTCC 58 94453229 94453399 AATGGTCTCATGGATCTTGAC 58 NA Rattus norvegicus 81 AABR07012775.1 ENSRNOG00000053044 ENSRNOT00000054860 1 1 1 60 2 208225585 208225604 CATCAAGCACTCAAAGAGCA 59 208225544 208225564 CTTCTGATCGTTCTCCTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdk5r2 ENSRNOG00000037793 ENSRNOT00000057368 2 1 1 123 9 82121026 82121044 AAGACCTCAAGAACGAGGG 59 82121131 82121149 ATAGTCCAATGCTTGGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mettl18 ENSRNOG00000025189 ENSRNOT00000003636 3 1 1 81 13 82298643 82298662 GGGACTTTGAGACTACTCGT 59 82298705 82299347 TCAATTTAGCCCTCACAGTG 58 NA InUTR Rattus norvegicus 81 Olr1768 ENSRNOG00000058820 ENSRNOT00000077744 3 1 1 60 X 156210479 156210500 ACTCTTACCACACTGATATTCC 57 156210519 156210539 AGAAATGGTTGATGACATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hprt1 ENSRNOG00000031367 ENSRNOT00000045153 1 1 1 80 X 158642767 158642790 GCGCTGAATAGAAATAGTGATAGG 60 158636881 158642731 TGACTGGTCATTACAGTAGCTC 60 NA Rattus norvegicus 81 Abcd1 ENSRNOG00000056524 ENSRNOT00000084088 1 1 1 80 X 157075090 157075193 CCTCCCTATGGAAGTACCAC 59 157075029 157075047 CAGCAGAATCCAGCTTCTC 58 NA Rattus norvegicus 81 AABR07067274.1 ENSRNOG00000038721 ENSRNOT00000051890 1 1 1 60 9 37593326 37593345 TTATCCACTGGTGATGTTGC 58 37593415 37593433 CATACTTCTCCTTCAGCGT 57 NA DesignNoJunction Rattus norvegicus 81 Krt13 ENSRNOG00000014070 ENSRNOT00000018851 2 1 1 80 10 88034199 88034217 AAGACTGACCTGGAGATGC 59 88033960 88034156 CTTCATCTCCTCTTCGTGGT 59 NA Rattus norvegicus 81 Pcp4l1 ENSRNOG00000003209 ENSRNOT00000078402 1 1 2 82 13 89544802 89545182 ATGAGCTCGCTTAACACCA 59 89543633 89543651 TTAATGCTGCCAGGTTTCC 58 NA InUTR Rattus norvegicus 81 Pcp4l1 ENSRNOG00000003209 ENSRNOT00000078402 3 1 2 87 13 89544802 89545182 ATGAGCTCGCTTAACACCA 59 89543628 89543646 CCTTCTTAATGCTGCCAGG 59 NA InUTR Rattus norvegicus 81 Pcif1 ENSRNOG00000016870 ENSRNOT00000023202 3 1 1 80 3 161353816 161353838 CCTGGAATATGTTAAACGGATCC 59 161353878 161354461 GAGGCCTCTACTTCCTCTG 59 NA Rattus norvegicus 81 Map3k3 ENSRNOG00000061424 ENSRNOT00000088656 3 1 1 80 10 94311664 94314482 AATAATGAGCTCTCCATCCTG 57 94314524 94314542 CATACTCGCGCTTCTATCC 58 NA Rattus norvegicus 81 Cstl1 ENSRNOG00000004779 ENSRNOT00000006362 3 1 1 83 3 143085246 143085264 TCCAGTCTTACAACAACGC 58 143085311 143088784 CTGTGGTCAACTGCATCTG 59 NA Rattus norvegicus 81 AABR07037570.1 ENSRNOG00000024298 ENSRNOT00000030377 1 1 1 60 X 24117789 24120413 AAGATTTGCAGGAGTGAAGG 58 24117748 24117769 TAATAGACTGCAAAGGAAGCCA 60 NA DesignNoJunction Rattus norvegicus 81 Tlr10 ENSRNOG00000038722 ENSRNOT00000059124 1 1 1 80 14 45064617 45064640 CTGGGTGAAGAATGAATTACTACC 59 45076172 45081678 TCAGGGTCAAAGTTCCTCTG 59 NA Rattus norvegicus 81 Rpl5 ENSRNOG00000023529 ENSRNOT00000030428 3 1 1 81 14 2864034 2864057 GATGAGGATGCGTATAAGAAACAG 60 2861740 2864000 TCTTATACATCTCCTCCATCATGTC 60 NA Rattus norvegicus 81 Kirrel2 ENSRNOG00000020864 ENSRNOT00000028306 3 1 1 81 1 88918331 88919216 AAAGAGACCTTCCAGGGTG 59 88918268 88918286 ACAGGCTTAATGTGGAGGT 59 NA Rattus norvegicus 81 Kcne5 ENSRNOG00000019176 ENSRNOT00000025923 3 1 1 78 X 113584202 113584223 AACGATGCTTATCTCTACATCC 58 113584145 113584163 GAGTGTAGGCCAGGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snx3 ENSRNOG00000046705 ENSRNOT00000075924,ENSRNOT00000074532 2 2 2 88 20 47253680 47253702 CTTCAAGCTGAAGGAATCTACTG 59 47253751 47260718 GAACGACAACCTTGCTCTC 59 NA Rattus norvegicus 81 Xylb ENSRNOG00000014168 ENSRNOT00000019106 1 1 1 82 8 128069206 128069671 TGCAGATAACATGGAGGTCTC 60 128069715 128069733 TCCTCTTGGCCATGAACTG 60 NA Rattus norvegicus 81 AABR07025825.1 ENSRNOG00000032977 ENSRNOT00000048104 3 1 1 96 16 52025220 52025239 CTCGAGTACATGACAAAGGG 58 52025297 52025397 TAAAGCCTGACAGAACTGAG 57 NA Rattus norvegicus 81 Atp2a3 ENSRNOG00000017912 ENSRNOT00000064840,ENSRNOT00000065181,ENSRNOT00000087723 1 3 3 80 10 59545343 59545362 GAACGTGTTTGACACAGACC 60 59545404 59545762 ATGAGTTGCTTGATGACGGA 60 NA Rattus norvegicus 81 Adgre5 ENSRNOG00000004489 ENSRNOT00000006152 3 1 1 80 19 24861352 24861373 TGAGTTTCTCTGTTGAAGTCCA 60 24860547 24861312 CGATGAGTTTCTGGATGGTG 59 NA Rattus norvegicus 81 Kbtbd4 ENSRNOG00000009397 ENSRNOT00000068124,ENSRNOT00000084833 2 2 2 87 3 79731718 79731736 AGAGGCAATAGACGCTTGG 60 79731783 79733263 CCCAATTTCCTTTAAGCTAGTCC 60 NA Rattus norvegicus 81 Svop ENSRNOG00000000693 ENSRNOT00000000874,ENSRNOT00000084511 1 2 2 80 12 48345339 48346500 ATTGGAAGAAATGTGCTAACCC 59 48346541 48346559 GTAAACGTAGGCTGCTTGG 59 NA Rattus norvegicus 81 Prdx3 ENSRNOG00000010958 ENSRNOT00000015186 2 1 1 80 1 282249577 282249596 GAAGAACCTGCTTGACAGAC 59 282247685 282249535 TGTGGAATGAAGAACTGGTG 58 NA Rattus norvegicus 81 Frrs1l ENSRNOG00000043103 ENSRNOT00000031432 2 1 1 86 5 74013776 74029012 TGTCAGAGGAGGGATACCC 60 74013708 74013726 CCTTAGTCCTTCCGCAGTC 60 NA Rattus norvegicus 81 Zfp87 ENSRNOG00000016462 ENSRNOT00000022527 1 1 1 80 1 37932001 37932019 CCTTGCTCAGTGGAATCTG 58 37931487 37931957 TTACAGGATGCAAGACCCA 59 NA Rattus norvegicus 81 R3hdml ENSRNOG00000027432 ENSRNOT00000031868 2 1 1 80 3 159887399 159887419 CCTTGCTGGATTATCACAACC 59 159887458 159890799 GCTCATCCCAAACCATATACTC 59 NA Rattus norvegicus 81 Trpc5os ENSRNOG00000039233 ENSRNOT00000060090 1 1 1 60 X 115721329 115721350 CTATTACAGTTCATCTCGCAGG 59 115721371 115721389 CTTCTGCTCTAGGATTCGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trpc5os ENSRNOG00000039233 ENSRNOT00000060090 3 1 1 60 X 115721451 115721473 CGACTTAGAATCCATCCTTTCAG 59 115721491 115721511 TTCATCCATGTCAAGGATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clic1 ENSRNOG00000029682 ENSRNOT00000068435 3 1 1 80 20 5045444 5048778 TCACATAGTCCAGGTGGTG 59 5048822 5048840 CTCAAGTACCGATGCACTC 58 NA Rattus norvegicus 81 Rnf150 ENSRNOG00000003479 ENSRNOT00000004621 1 1 1 88 19 24221050 24263928 AACTAACAGTGACCAAGAGC 58 24263979 24263997 GTTCTACATCAGACAGCCC 58 NA Rattus norvegicus 81 LOC681006 ENSRNOG00000025953 ENSRNOT00000039453 2 1 1 80 1 279938156 279938178 ACCCTTCTCCTAAAGTCTTACAG 59 279938013 279938116 TTGGGAGTGTTTGACCTGG 60 NA Rattus norvegicus 81 Kansl3 ENSRNOG00000015417 ENSRNOT00000085260,ENSRNOT00000020955 3 2 2 80 9 42915173 42915480 CAAGCATCAGGCTTAAAGGTC 60 42915113 42915134 AGGGCTTAGTGTAGTGATTCTG 60 NA Rattus norvegicus 81 Acot8 ENSRNOG00000015187 ENSRNOT00000020740 3 1 1 81 3 161263629 161267410 CAGTACTTAAGGGATCCTAACCT 59 161263570 161263588 TCTCAATAGGCACCTCTCG 59 NA Rattus norvegicus 81 Kcnh7 ENSRNOG00000007528 ENSRNOT00000085246,ENSRNOT00000009920 3 2 2 80 3 48705846 48706523 AGTGCAAAGTCCCAATCCA 60 48705784 48705805 TTCGCTTTCAAAGGACAATCTC 60 NA Rattus norvegicus 81 Mesp1 ENSRNOG00000014951 ENSRNOT00000020117 2 1 1 74 1 141533000 141533018 GGAAAGGCAGGAGATGGAG 60 141532700 141532718 CAGGTTTCTAGCAGAGCCA 59 NA DesignNoJunction Rattus norvegicus 81 Smc1a ENSRNOG00000003139 ENSRNOT00000004364 3 1 1 80 X 21729749 21729872 TGAACCAGGTGGAAGATGAG 60 21729914 21729933 TTTCTTCCTCAAATTCGCGG 59 NA Rattus norvegicus 81 Osm ENSRNOG00000024390 ENSRNOT00000035591 1 1 1 100 14 84465658 84467211 AACACTGCTTAGTTTGGCC 59 84467275 84467293 TCTTCAACTGGCTGAGGAG 59 NA Rattus norvegicus 81 Osm ENSRNOG00000024390 ENSRNOT00000035591 2 1 1 101 14 84465657 84467211 GAACACTGCTTAGTTTGGCC 60 84467275 84467293 TCTTCAACTGGCTGAGGAG 59 NA Rattus norvegicus 81 Cacng3 ENSRNOG00000012362 ENSRNOT00000016632 1 1 1 80 1 192613968 192695045 GCTTAGAAGGAGCTTTCCG 58 192695086 192695107 CTGCTGTATCCTGTTCATAGTC 59 NA Rattus norvegicus 81 Cacng3 ENSRNOG00000012362 ENSRNOT00000016632 3 1 1 80 1 192613967 192695044 TGCTTAGAAGGAGCTTTCC 57 192695086 192695106 TGCTGTATCCTGTTCATAGTC 57 NA Rattus norvegicus 81 Lrriq4 ENSRNOG00000009004 ENSRNOT00000058919,ENSRNOT00000011932 3 2 2 80 2 116364364 116369571 AGTGAAGCAGTTACCACCA 59 116364302 116364323 AAGGACACAAAGTCATTTCCTG 59 NA Rattus norvegicus 81 Smc2 ENSRNOG00000022325 ENSRNOT00000066226 2 1 1 80 5 68738228 68739802 CGCTCAGAATCTTGTTGGT 58 68739845 68739864 ATCGCTTTCTGAAGTTCTGG 58 NA Rattus norvegicus 81 LOC100910697 ENSRNOG00000050594 ENSRNOT00000050480 1 1 1 60 X 95352419 95352438 CAGTGACTCAGTTCATCCTC 58 95352461 95352479 AAGAGTGGATAGCGTACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC499643 ENSRNOG00000032009 ENSRNOT00000065115,ENSRNOT00000084198 2 2 2 93 2 178117637 178169840 GGTCATCACAGGTCCAGAC 60 178169896 178169915 TTTCTCTAATGCTGGACGCT 60 NA Rattus norvegicus 81 LOC681355 ENSRNOG00000039063 ENSRNOT00000059744 2 1 1 60 X 18489749 18489769 CAGTGTAAAGAACCCTTGCTC 59 18489788 18489809 TCGATCTATGAAGAATCTCCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc43 ENSRNOG00000002748 ENSRNOT00000003685 2 1 1 88 10 90648901 90650191 GAAGAGGATGAAGCAGATGAG 58 90646749 90646768 ACATTGGTGTTTCGGAACAG 59 NA Rattus norvegicus 81 Poteg ENSRNOG00000012218 ENSRNOT00000016348 2 1 1 80 16 68830439 68830628 CTCTCATAAAGTCTGTCCAGTG 58 68830380 68830398 CGATAACGTTCGGATCAGC 59 NA Rattus norvegicus 81 Ptgds ENSRNOG00000015550 ENSRNOT00000020926 3 1 1 80 3 2688502 2688927 CTTTCAACAAGACAAGTTCCTG 58 2688443 2688461 TCTTTCTTCTCCCGGAACC 59 NA Rattus norvegicus 81 Olr390 ENSRNOG00000017664 ENSRNOT00000023742 3 1 1 60 2 199529074 199529094 AGCCAACTTCAACTATGACAG 58 199529034 199529054 CACCAATATGTCCATGTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gata1 ENSRNOG00000047663 ENSRNOT00000075082 3 1 1 89 X 15279202 15279220 TACCTGTGCAATGCTTGTG 59 15279273 15280323 CTTGCTGACAATCATTCGC 58 NA Rattus norvegicus 81 Hnf4a ENSRNOG00000008895 ENSRNOT00000089893,ENSRNOT00000011978,ENSRNOT00000078703 2 3 3 82 3 159950195 159954628 CTTCTGGATGACCAGGTGG 60 159954674 159954692 AACACCATGGACCTCTTGG 60 NA Rattus norvegicus 81 Vps25 ENSRNOG00000051179 ENSRNOT00000043754,ENSRNOT00000076944,ENSRNOT00000076658,ENSRNOT00000075894 1 4 5 84 10 89176901 89177706 TTATCAATGGGTTTCCAGGAG 58 89177752 89177770 TTCCTCCTCTGTGTCTTCC 58 NA Rattus norvegicus 81 AABR07054708.1 ENSRNOG00000050969 ENSRNOT00000075542 3 1 1 105 3 167270463 167270482 AACTTCACTCAGGAAGAGTG 57 167270062 167270398 AAATGTATCCTATAGCGCTGAG 58 NA Rattus norvegicus 81 Gak ENSRNOG00000000048 ENSRNOT00000000064 1 1 1 80 14 2116846 2120746 TGGAGGAAGAGATCACGAG 58 2120784 2120808 CAATAGGGAAGTTAGAATACAGGTC 59 NA Rattus norvegicus 81 Aif1 ENSRNOG00000000853 ENSRNOT00000076979,ENSRNOT00000001135,ENSRNOT00000001138 2 3 3 83 20 5161543 5162085 GCCATCTTGAGAATGATTCTG 57 5161480 5161498 AATAGCTTTCTTGGCTGGG 58 NA Rattus norvegicus 81 Gjc1 ENSRNOG00000048838 ENSRNOT00000073372 3 1 1 82 10 90782876 90784291 TGGTTAACAGGGCAAACCA 60 90782812 90782832 GTCGAATGGTTGTGTATCTCC 59 NA InUTR Rattus norvegicus 81 Slc10a6 ENSRNOG00000002057 ENSRNOT00000002819,ENSRNOT00000088508 1 2 2 80 14 7618384 7628442 AGATATGGACCTCAGCATCAG 59 7628484 7628502 TAGACGTAGAGGCAGAGGG 60 NA Rattus norvegicus 81 Spata22 ENSRNOG00000037307 ENSRNOT00000056443,ENSRNOT00000080446 2 2 2 85 10 59900971 59900991 CCCTGAGAATTGAAGATCCTG 58 59901038 59903779 GTTGTTGCCTCTGTATCCC 58 NA Rattus norvegicus 81 Dnajc14 ENSRNOG00000006844 ENSRNOT00000037332 2 1 1 80 7 3237990 3238452 GAAGGAATATGAGATGAAACGG 57 3238492 3238511 TCATCTTGTAGCTTCGACAG 58 NA Rattus norvegicus 81 Pcgf5 ENSRNOG00000018532 ENSRNOT00000025020,ENSRNOT00000092151 3 2 2 80 1 255063274 255063292 CCACAAATCGCTATCTGCC 59 255063333 255067146 CTTCTTCATGAGACCCTTTACC 59 NA Rattus norvegicus 81 LOC100364877 ENSRNOG00000049646 ENSRNOT00000075721 1 1 1 60 X 134389587 134389606 AAAGAAGTATGAAGCCCTGG 58 134389628 134389647 GTTTCTCATTTCACGTTGGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Utp23 ENSRNOG00000004387 ENSRNOT00000005828 1 1 1 80 7 91387944 91387964 AATGTCTCCTGTCTATGGTGG 59 91388000 91389076 CTTTCACAGATAAGTTCTGATCCTG 60 NA Rattus norvegicus 81 Rhog ENSRNOG00000020393 ENSRNOT00000076499 1 1 3 144 1 167337332 167347349 CTGAGCTGGTCACTACTTCC 60 167337207 167337225 TAGCAGATGAGAAGGCACG 60 NA InUTR Rattus norvegicus 81 Pdgfc ENSRNOG00000010695 ENSRNOT00000015081,ENSRNOT00000082273 3 2 2 80 2 180118951 180123367 AAGCAAAGCGGTGAATCTG 59 180123410 180123429 ATGGACACAGAGAAGTTCCG 60 NA Rattus norvegicus 81 Gdpd3 ENSRNOG00000019685 ENSRNOT00000026688 2 1 1 80 1 198200761 198200781 TCCAGAAATTTCCAAGGACTC 58 198200823 198200919 CCATGTTGGCTACCTTGTG 59 NA Rattus norvegicus 81 Arhgap6 ENSRNOG00000003956 ENSRNOT00000051655,ENSRNOT00000036502 1 2 2 80 X 26365369 26376402 AGACAAAGAATTCATCCCACAG 59 26365310 26365329 TGCTTCAGTTTATATGCCCG 59 NA Rattus norvegicus 81 R3hdm2 ENSRNOG00000007801 ENSRNOT00000045964,ENSRNOT00000090001 1 2 2 80 7 70767895 70770570 GAGAACCAGATGAGAGTTCC 57 70770611 70770631 GACCCTTTGATATTCCTCCTC 58 NA Rattus norvegicus 81 Prpf38b ENSRNOG00000020438 ENSRNOT00000027738 2 1 1 80 2 211708586 211708605 AAGAAAGACGGAAAGGAAGG 58 211708160 211708546 CAGTGATCTTCTTGGAGATCTG 58 NA Rattus norvegicus 81 RT1-DMb ENSRNOG00000051002 ENSRNOT00000087520,ENSRNOT00000078309 1 2 3 78 20 5227632 5227650 CTACACTCCTCTCCCTGGA 59 5227308 5227326 CTGGATCTCCTTCTCAGCG 60 NA DesignNoJunction Rattus norvegicus 81 Cish ENSRNOG00000029543 ENSRNOT00000040056 2 1 1 83 8 116057696 116057715 ATGAACCGAAGGTGCTAGAC 60 116057761 116058001 AGTACCAACCAGATTCCCG 59 NA Rattus norvegicus 81 Myo5c ENSRNOG00000008356 ENSRNOT00000011768 1 1 1 80 8 82182749 82182770 CTGAAATTGCGAAGGACTACAG 60 82182811 82185255 CAGGGTAATCCAGTTCCGT 59 NA Rattus norvegicus 81 Apoc1 ENSRNOG00000018426 ENSRNOT00000046169,ENSRNOT00000091647 2 2 2 138 1 80606779 80609217 TGATCAAGACTCGGAACTGG 60 80606660 80606678 ATTTGAAGAGGGACCTGGC 60 NA InUTR Rattus norvegicus 81 Ankar ENSRNOG00000003991 ENSRNOT00000005313 2 1 1 80 9 53024892 53024912 ACCTTTACAGAGGATTCAGGA 58 53024951 53029229 GATCACATAGTAGCTCTTTCCA 58 NA Rattus norvegicus 81 Ssrp1 ENSRNOG00000008825 ENSRNOT00000091901,ENSRNOT00000012022 3 2 2 80 3 72450763 72450913 ATGTTCTTTGTGATCAGCCT 58 72450954 72450974 CTTTGAGAAGAGGAGGATCAG 58 NA Rattus norvegicus 81 Hsd11b1 ENSRNOG00000005861 ENSRNOT00000007870 2 1 2 80 13 111971478 111972199 GTTCAGACCAGAAATGCTCC 59 111971417 111971438 TGATATGCCATTTCTCTTCCGA 60 NA Rattus norvegicus 81 Tmed5 ENSRNOG00000000073 ENSRNOT00000000083 2 1 1 80 14 2615877 2621981 GCGTTCATACTGTAGAGACTG 58 2622022 2622041 TGACCTTCTCAGAGATGGTG 59 NA Rattus norvegicus 81 Bves ENSRNOG00000043199 ENSRNOT00000076504,ENSRNOT00000066167 2 2 2 80 20 50447314 50448805 TCCTAAAGGGAAGAATGAAGGT 59 50448842 50448864 CAGGAGAATCTATAAAGGCACAC 59 NA Rattus norvegicus 81 Myl4 ENSRNOG00000050675 ENSRNOT00000072480 2 1 1 101 10 92635219 92635514 AAGCCTGAAGAGATGAATTCCA 60 92635576 92635594 GAAGTCCTCATAGGTGCCC 60 NA Rattus norvegicus 81 LOC679811 ENSRNOG00000009837 ENSRNOT00000013260 1 1 1 80 2 182925424 182925444 TGGATTTGAAGTGCTAGACTG 58 182924965 182925384 TCCGGAGTAAACACAATACTG 58 NA Rattus norvegicus 81 Snupn ENSRNOG00000005426 ENSRNOT00000007261 2 1 1 80 8 61626329 61634896 CGCTATGCTAATCAATTGATGC 59 61634936 61634955 CACAACCACAATCCATTCCT 59 NA Rattus norvegicus 81 Snupn ENSRNOG00000005426 ENSRNOT00000007261 3 1 1 81 8 61622930 61622953 CAATACAAGTCCAAGTATAGCTCC 59 61622993 61626206 CCAACCGCTTGGATTTCTG 60 NA Rattus norvegicus 81 Hapln3 ENSRNOG00000022321 ENSRNOT00000032174 2 1 1 87 1 140835020 140835038 GGACTTCCGTTCTACAACG 58 140832019 140834970 CATTGAATAGGCCTTCTCCA 57 NA Rattus norvegicus 81 Hapln3 ENSRNOG00000022321 ENSRNOT00000032174 3 1 1 87 1 140835019 140835037 GACTTCCGTTCTACAACGG 58 140832018 140834969 CCATTGAATAGGCCTTCTCC 58 NA Rattus norvegicus 81 Zglp1 ENSRNOG00000042601 ENSRNOT00000068598 3 1 1 85 8 22082066 22082084 CTTGTAGGACCCAGAGGAC 59 22081820 22082018 TTTCTTGTACCTGATGCCAC 58 NA Rattus norvegicus 81 Mdk ENSRNOG00000017560 ENSRNOT00000033978 1 1 1 108 3 80842059 80842077 CAAGGGACCCTGAAGAAGG 60 80841286 80841987 TTCCTTTCTTGGCTTTGGC 59 NA Rattus norvegicus 81 Grik2 ENSRNOG00000000368 ENSRNOT00000076805,ENSRNOT00000037559 3 2 2 80 20 54094597 54094615 ACCAATGGATTACGGACAG 57 54058971 54094555 ATCCCAAGTTCCAATCTTCTC 58 NA Rattus norvegicus 81 Polr2a ENSRNOG00000028834 ENSRNOT00000068013 2 1 1 80 10 56350763 56350784 ATTGCAGATTCCAAGACTTACC 59 56350572 56350728 CTTCTCAATGACCTCTATTACATCC 59 NA Rattus norvegicus 81 Gstm7 ENSRNOG00000018937 ENSRNOT00000081501,ENSRNOT00000025689 2 2 3 80 2 210723673 210724720 TATAACCCTGACTTTGAGAAGC 58 210723614 210723632 CAGGAACTCGGAGTAAAGC 58 NA Rattus norvegicus 81 Ch25h ENSRNOG00000019141 ENSRNOT00000025856 3 1 1 60 1 252808290 252808308 TCTGGGACAGCATAAGGAC 59 252808248 252808267 AAGATGACTGGGAAGAAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680489 ENSRNOG00000026351 ENSRNOT00000035538 1 1 1 60 X 44999853 44999876 CATCTTTCCATATGCCGTTATACC 60 44999816 44999836 GCCACTACATTAGCAATTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abra ENSRNOG00000007999 ENSRNOT00000010539 3 1 1 116 7 80796065 80796083 TAGACACAGAGGACAGTGG 58 80793180 80795985 AGTATCTGTTTGCCTGGGA 58 NA Rattus norvegicus 81 AABR07029989.1 ENSRNOG00000047607 ENSRNOT00000075322 2 1 1 81 10 62414336 62414358 CAACAACACATCTTCTTGCTC 58 62414398 62414419 TACTAATTGCCAGGACAATGAG 58 NA Rattus norvegicus 81 Fiz1 ENSRNOG00000016574 ENSRNOT00000022236 1 1 1 61 1 72382075 72382093 GATTCCGAGACTCCACTGG 60 72385129 72385147 GTAGGGCTTCTCACCAGTG 60 NA DesignNoJunction Rattus norvegicus 81 Pctp ENSRNOG00000002425 ENSRNOT00000003295 2 1 1 80 10 77496621 77498900 ACCAGTACGTGAAAGAACTC 58 77496560 77496578 GAGGGAAAGGGTACTTCAC 57 NA Rattus norvegicus 81 Olr1065 ENSRNOG00000049157 ENSRNOT00000048396 2 1 1 60 7 9294835 9294855 ATCATTCTGTTGACTCTGCTG 59 9294874 9294895 TTCGGAGGAAGAAATACATAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arpp21 ENSRNOG00000008919 ENSRNOT00000085161,ENSRNOT00000042854,ENSRNOT00000037199 3 3 3 94 8 120444317 120444337 TCAGAAAGTCTGGATGAGGAG 59 120442579 120443292 TTACCTGCTCCTGACTTGG 59 NA Rattus norvegicus 81 Chrnb4 ENSRNOG00000014427 ENSRNOT00000019458 1 1 1 80 8 59615269 59615290 ATCTACAGGAAGCATTAGAGGG 59 59610620 59615230 CCTCGATGACACTTTGATCTC 59 NA Rattus norvegicus 81 Prkca ENSRNOG00000003491 ENSRNOT00000055073,ENSRNOT00000004699 3 2 2 80 10 96265114 96265132 CACGGAATGACTTCATGGG 59 96264846 96265071 GCAACTTGTACCATCCACTG 59 NA Rattus norvegicus 81 Hnmt ENSRNOG00000005223 ENSRNOT00000007471 3 1 1 81 3 905792 909615 TCTTGTGTCAGGAACTAGTGG 60 905731 905749 ATACTGGCAGAGGTCATCC 59 NA Rattus norvegicus 81 Glipr1l1 ENSRNOG00000026634 ENSRNOT00000039475 2 1 1 80 7 54837646 54853779 ATACACAGGTAGTCTGGGC 59 54837584 54837602 CAGCCGAATATCCTGTGAG 58 NA Rattus norvegicus 81 RGD1565459 ENSRNOG00000033613 ENSRNOT00000042056 3 1 1 74 10 97505243 97505261 CAACTACAGCAAGCTGCTG 60 97505187 97505206 TAGTTGATGTAGACCCGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rad21 ENSRNOG00000004420 ENSRNOT00000006209 2 1 1 80 7 91522317 91522341 AGAGTAGAAGAGATAACCATGAGAG 59 91521683 91522281 CATTCCAAAGTCACCGAAGTC 60 NA Rattus norvegicus 81 Rp9 ENSRNOG00000029456 ENSRNOT00000065367 1 1 1 80 8 23465464 23469255 GTCAAAGTTATGCAGTGTTGG 58 23465404 23465423 GCCTTTGATAAAGAAAGGGC 58 NA Rattus norvegicus 81 Rp9 ENSRNOG00000029456 ENSRNOT00000065367 2 1 1 80 8 23465463 23469254 TCAAAGTTATGCAGTGTTGGC 60 23465403 23465423 TGCCTTTGATAAAGAAAGGGC 59 NA Rattus norvegicus 81 Fcho2 ENSRNOG00000015334 ENSRNOT00000020692 2 1 1 80 2 28950094 28953041 GAGTGGAATTAATGAAATACCCAGG 60 28950038 28950056 GCTAAGGGAGCAGTAGGAG 59 NA Rattus norvegicus 81 Msx1 ENSRNOG00000006876 ENSRNOT00000009101 2 1 1 183 14 77712767 77712785 GAGAAGCTAGATCGGACCC 59 77714970 77714989 TAGACAGGTACTGCTTCTGG 59 NA DesignNoJunction Rattus norvegicus 81 RT1-CE7 ENSRNOG00000031090 ENSRNOT00000061114 2 1 2 80 20 4774544 4896479 CGGTTCATTATCGAAGTCGG 59 4774483 4774501 CTCCATCCTCGGATTCTCC 59 NA Rattus norvegicus 81 AABR07055668.1 ENSRNOG00000025369 ENSRNOT00000035110 2 1 1 85 7 7574139 7574159 TGAATTCCTCTGCACAGCA 60 7574203 7574226 GCAACTACCATATGTTGTAGAGAC 59 NA Rattus norvegicus 81 Trim25 ENSRNOG00000002341 ENSRNOT00000055674 3 1 1 80 10 76344435 76344453 TATCTGCCTGGTAGAGCAC 59 76344497 76348630 TGCCTCAGTTTGTTCTCCA 59 NA Rattus norvegicus 81 Ncoa5 ENSRNOG00000017824 ENSRNOT00000024214 1 1 1 80 3 161469566 161474546 CAGACGAAAGATTATGCGGAG 59 161469506 161469525 TGTGTTGAGGAAGATCAGGT 59 NA Rattus norvegicus 81 AABR07066201.1 ENSRNOG00000022509 ENSRNOT00000061893 2 1 1 122 9 4733492 4733510 GAAGCTGATGAAGAAGCGA 58 4734030 4734048 CATCACTCCTCAATAGGGC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rplp0 ENSRNOG00000001148 ENSRNOT00000001518 2 1 1 81 12 46792994 46793110 TGAAATCCTGAGCGATGTG 58 46792931 46792950 GTTCAACATGTTCAGCAGTG 58 NA Rattus norvegicus 81 Tmco4 ENSRNOG00000017401 ENSRNOT00000023431,ENSRNOT00000088556 2 2 2 80 5 157475742 157475761 CTTGATTGGATTCAGCCTGG 59 157475804 157494440 ATCCCTTGGCAATCTTGCT 60 NA Rattus norvegicus 81 Wdr47 ENSRNOG00000020330 ENSRNOT00000055862 3 1 1 80 2 211406563 211409934 CCCAGCATTTGGAATTTACC 57 211409976 211409995 AATCGTCTTTAGAAGGGCAG 58 NA Rattus norvegicus 81 Dnai2 ENSRNOG00000024523 ENSRNOT00000038852 2 1 1 80 10 103287040 103287058 CATCACCAGAAAGGAGCAG 58 103287102 103292225 ATGAACTTGGTTGGCAAGG 59 NA Rattus norvegicus 81 Ssh1 ENSRNOG00000000695 ENSRNOT00000044751 3 1 1 80 12 48431738 48433276 TCTAAGGAAATCCGAAATGAGC 59 48433314 48433335 CATCTCGTTATCGATGAACTCC 59 NA Rattus norvegicus 81 Dnm2 ENSRNOG00000007649 ENSRNOT00000066007,ENSRNOT00000010947,ENSRNOT00000065028 1 3 3 80 8 22532320 22532339 AATACGGGATGTGGAGAAGG 59 22532381 22534332 TTGTAGACGTTCCTCTGCTC 60 NA Rattus norvegicus 81 Txndc9 ENSRNOG00000018593 ENSRNOT00000025098 3 1 1 80 9 44654519 44656402 CAGAAACAAGAATGGCTTTCCA 60 44654460 44654482 CTTGACCTCTTGAAAGAAGTCTC 59 NA Rattus norvegicus 81 LOC689959 ENSRNOG00000051792 ENSRNOT00000080736 3 1 1 96 8 55167378 55167399 TTCCAGAAGAGAAACAAGACAG 58 55165821 55166410 TTTCATAGTCCTTCGTGCC 58 NA Rattus norvegicus 81 Gyltl1b ENSRNOG00000006353 ENSRNOT00000051258 2 1 1 80 3 81277386 81277404 CTCACACCCTACGTCTTCC 60 81277017 81277342 CTCAATAGAGGCCCTGAGG 59 NA Rattus norvegicus 81 Esyt1 ENSRNOG00000060753 ENSRNOT00000082107 1 1 1 80 7 2925540 2925631 AATGAGCGGTTTGAATGGG 59 2925478 2925497 GGAGGAGTTTGACTTCACAG 58 NA Rattus norvegicus 81 LOC100359924 ENSRNOG00000049218 ENSRNOT00000074169 2 1 1 84 8 36909476 36909928 TGTACAAGTCTCATACAATGGG 58 36909973 36909991 CCCAAGTTTCTTCTGCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Hhatl ENSRNOG00000019404 ENSRNOT00000026261 3 1 1 80 8 130424961 130424979 CATTACCGCACTCTACGTC 58 130423087 130424819 TGGTCATACACGTATTTGCA 58 NA Rattus norvegicus 81 Igf1r ENSRNOG00000014187 ENSRNOT00000019267 2 1 1 80 1 129180758 129180780 CATAGAAAGAGGGTGTCTGG 57 129186988 129187007 CACGTACACTAGGAACAGAC 58 NA Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000082086,ENSRNOT00000043518 2 2 4 80 8 39234881 39235248 TTACCCAGGCTTAATGATCAC 58 39234821 39234840 ACATTCCGAATGTCAATGGT 58 NA Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000082086,ENSRNOT00000043518 3 2 4 80 8 39220713 39221108 CTTATCCTATTAAGAATGAGGTGGC 59 39220657 39220676 TCGAATGAAACGTGTAGGTG 58 NA Rattus norvegicus 81 Kdm2a ENSRNOG00000019145 ENSRNOT00000054850 1 1 1 80 1 219599889 219599908 GGCTGCTATACTGACTTCCA 59 219598510 219599846 CCAGAAGACCTTTCCACCT 59 NA Rattus norvegicus 81 Sec14l4 ENSRNOG00000004555 ENSRNOT00000006053,ENSRNOT00000078271 1 2 4 80 14 84286841 84286859 CCTTCAACCTGGTCAAGTC 58 84286901 84287178 GCTCTTGTTTCCAGTTACCTC 59 NA Rattus norvegicus 81 Tmem30a ENSRNOG00000010895 ENSRNOT00000015299,ENSRNOT00000085725 3 2 2 98 8 87229255 87229960 CCCTAGTGCTTTGCTTAATCC 59 87229177 87229195 AACATGCTGTTGGCAATGG 60 NA Rattus norvegicus 81 Erbb2ip ENSRNOG00000047137 ENSRNOT00000075196 1 1 1 80 2 33918546 33920658 GAATTCACAAGAAGTGCCTG 57 33918485 33918505 AAAGTCAGTCTATTGCCATCC 58 NA Rattus norvegicus 81 Ptgdr2 ENSRNOG00000036631 ENSRNOT00000054808 1 1 1 60 1 226993478 226993496 CTTGGAGGAGATGGTCCAG 59 226993520 226993538 GTGGTCAATATAGCGGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptgdr2 ENSRNOG00000036631 ENSRNOT00000054808 2 1 1 60 1 226993932 226993951 CCCTATTTCGTGTTCAGGGA 60 226993973 226993992 TGTAATAGCACATGATGCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem25 ENSRNOG00000014218 ENSRNOT00000067558 1 1 1 80 8 49102547 49102741 GTCCTTCTCTGATATCTAGTGACTC 60 49102491 49102509 ATGGGAGGGACATGTTCTC 59 NA Rattus norvegicus 81 Myo6 ENSRNOG00000011852 ENSRNOT00000016428 3 1 1 80 8 87680961 87685384 TCCGACTCACTATTCCCAG 58 87685428 87685446 AGTGCCTGATGATAAAGCC 58 NA Rattus norvegicus 81 LOC100910294 ENSRNOG00000046661 ENSRNOT00000072622 1 1 1 60 8 42846902 42846923 ATCTATGTGTTGACAGTAGTGG 58 42846863 42846881 GTGGGCTGACTATGATGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hirip3 ENSRNOG00000029061 ENSRNOT00000039964 1 1 1 80 1 198299044 198299062 TTAAGAGGTCTCCTGCTCC 58 198299105 198299380 GTGTAGAGCTGGATTCTGAC 58 NA Rattus norvegicus 81 Lsm1 ENSRNOG00000015375 ENSRNOT00000020721 2 1 1 81 16 71051106 71052472 TCAATTTGCTAACCTAGTGCTC 59 71051046 71051066 AATCCCTCGAGGAATATCACC 59 NA Rattus norvegicus 81 AABR07048253.1 ENSRNOG00000005694 ENSRNOT00000007507 2 1 1 81 5 69107159 69107177 TCTAAGAACCACACCACAC 57 69107094 69107114 CCTTAAGAGACTGTGACCG 57 NA Rattus norvegicus 81 AABR07048253.1 ENSRNOG00000005694 ENSRNOT00000007507 3 1 1 82 5 69107093 69107114 CGGTCACAGTCTCTTAAGGG 60 69107030 69107049 TTCAGGCCTTTCTTGTTGTG 59 NA Rattus norvegicus 81 Etv2 ENSRNOG00000024288 ENSRNOT00000031873 1 1 1 82 1 89093253 89093272 TCTATTTCCCTGAAGTGGCA 59 89092990 89093208 CTCTGGGAACCCTTTCCAG 60 NA Rattus norvegicus 81 Scamp5 ENSRNOG00000054008 ENSRNOT00000080012 3 1 1 81 8 62225220 62226172 AGGCCTTCAAGACAGACAG 59 62225157 62225175 TGGATGATGCTGATGACCA 59 NA Rattus norvegicus 81 Rnf7 ENSRNOG00000011663 ENSRNOT00000015821 1 1 1 81 8 104327704 104329999 AGAGGACTGTGTTGTGGTC 59 104327641 104327659 GTTGTTCTGCTTCACCCAC 59 NA Rattus norvegicus 81 Prdm10 ENSRNOG00000007853 ENSRNOT00000010423 2 1 1 80 8 32465425 32466916 CATGATTTGTGGTGTGAGGA 58 32466958 32466977 GTTAGGGATTGGATGCAAGG 59 NA Rattus norvegicus 81 Ccdc15 ENSRNOG00000032180 ENSRNOT00000040901 2 1 1 81 8 39791573 39791591 CACTGAACAGCAAGCTCTG 59 39790145 39791530 CAGATATTGCTTCTGACGCTC 59 NA Rattus norvegicus 81 Pxylp1 ENSRNOG00000012480 ENSRNOT00000017085 1 1 1 80 8 104757518 104757536 CAATCGCTTCTTGGTGCTG 60 104741194 104757476 GGGATCAGATGAAAGAACTGC 59 NA Rattus norvegicus 81 Dhx29 ENSRNOG00000010369 ENSRNOT00000013854 1 1 1 80 2 44804268 44804289 GAAGAATCTTCCCAAGAGTCCA 60 44804327 44804788 ACGACTCTTACCCTACATTTCC 60 NA Rattus norvegicus 81 Olr8 ENSRNOG00000030070 ENSRNOT00000050607 1 1 1 60 1 70496226 70496245 TTCCTGAGTCTTTACCTGCT 58 70496185 70496208 TGAAGATGAGGTAGATGATGAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc30a7 ENSRNOG00000013912 ENSRNOT00000019172 3 1 1 80 2 218937567 218937585 ATATTGGCTGGATTGGCAG 58 218934770 218937523 TTCCGCTCTAACATACCCA 58 NA Rattus norvegicus 81 B3gnt1 ENSRNOG00000046904 ENSRNOT00000074972 3 1 1 93 1 220323978 220324239 TTCAATCGAATCAGCCAGG 58 220324294 220324314 CCTTGAATCCCTTATGAACCA 58 NA DesignNoJunction Rattus norvegicus 81 RGD1560789 ENSRNOG00000020641 ENSRNOT00000035386 1 1 1 60 8 43534486 43534537 GGGTAAAGCTGAAGACAAGG 59 43534445 43534463 GTCCTTAACCAGGTGACCC 60 NA DesignNoJunction Rattus norvegicus 81 Olr199 ENSRNOG00000029755 ENSRNOT00000046417 2 1 1 60 1 170125803 170125827 TCCTTATCTTGATCACCATCTACTG 60 170125844 170125863 AGAAACTGGTACATTGGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adrm1 ENSRNOG00000055984 ENSRNOT00000091941 3 1 1 88 3 175548726 175548744 TCGTGTACATCCAGCAGAC 60 175548793 175549431 GATAATCAAGTCATCCTCCACG 59 NA Rattus norvegicus 81 AABR07008097.1 ENSRNOG00000026928 ENSRNOT00000036860 3 1 1 93 2 42727684 42727702 CTCTGGTATACCTGCTGGC 60 42727759 42727807 CCCAATCTGCTTAGCTCGA 60 NA DesignNoJunction Rattus norvegicus 81 Wdr31 ENSRNOG00000014869 ENSRNOT00000082642,ENSRNOT00000048904 3 2 2 80 5 78315659 78316111 GCACTTATCTGTACAGCAGG 59 78315598 78315616 GAGCAGGGATGTACTCCTG 59 NA Rattus norvegicus 81 Dph7 ENSRNOG00000008102 ENSRNOT00000046898 1 1 1 80 3 2171589 2173321 TGATGGAATGTGAGAAGAACAG 59 2173359 2173380 GTGATAAGGATAGACAGCTCTC 58 NA Rattus norvegicus 81 Snx33 ENSRNOG00000017382 ENSRNOT00000023428 2 1 1 89 8 61592716 61592734 ACCTCTTCCAAATGCTCGA 59 61586217 61592663 CAAAGGCACCTTTCTGCAG 60 NA Rattus norvegicus 81 Clk3 ENSRNOG00000030126 ENSRNOT00000068108,ENSRNOT00000080071 2 2 2 80 8 62529662 62529684 CAGAGAACACTTGGTTATGATGG 60 62529356 62529623 TACTTCTGCTTCCTGGTACG 59 NA Rattus norvegicus 81 C4a ENSRNOG00000000443 ENSRNOT00000086027 3 1 1 80 20 4502351 4502802 GACCAAAGAGAACCTGAGC 58 4502289 4502307 TCGCTAATAGCCTTCTGGA 58 NA Rattus norvegicus 81 Vma21 ENSRNOG00000048606 ENSRNOT00000071269 2 1 1 81 16 70146607 70147282 TATATTTGAAGGTGCCCTTGG 58 70146546 70146565 CACATGAACAGCAACAACAG 58 NA Rattus norvegicus 81 Rnf5 ENSRNOG00000000438 ENSRNOT00000000501 1 1 1 84 20 4367439 4368460 CTCTATTGTTGGCCCTGTC 58 4367280 4367299 TGCTTATTCCGGCTTTACAC 59 NA Rattus norvegicus 81 Eepd1 ENSRNOG00000006931 ENSRNOT00000009342 2 1 1 117 8 26755384 26757632 GAAAGTGTTCACGGGTCAC 59 26757713 26757731 CAATTCAGCAAGCACAGGG 60 NA Rattus norvegicus 81 Stk19 ENSRNOG00000048929 ENSRNOT00000072446 1 1 1 178 20 4516992 4517010 GAGAGCGGATCCTCTAAGG 59 4510512 4516679 CTTGAAGCTCCTTCAGCTG 59 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000082951 1 1 8 80 20 4458299 4458317 AGATTCCTCCTCTATGGGC 58 4458361 4458518 AGCATTCATCGACTCTGTG 58 NA Rattus norvegicus 81 Slc25a54 ENSRNOG00000027522 ENSRNOT00000038315 3 1 1 80 2 211921489 211921507 TCAGCAGAGGCTATGTTCC 59 211921548 211922126 TCTTCAGAAGCTCAAAGATGGT 60 NA Rattus norvegicus 81 Skiv2l2 ENSRNOG00000010125 ENSRNOT00000060695 1 1 1 80 2 44738669 44738690 CTCTTCAATGACCTTTCTTCAG 57 44736829 44738630 GGGCATCTCACTAGAATTCTC 58 NA Rattus norvegicus 81 Scml4 ENSRNOG00000026110 ENSRNOT00000087230,ENSRNOT00000064905 2 2 2 80 20 47684076 47684094 TCCGGTTTGTGAAAGATGC 59 47684137 47686128 CATTGCCATCAATCTCATGC 58 NA Rattus norvegicus 81 Ubxn11 ENSRNOG00000015476 ENSRNOT00000021342 1 1 1 80 5 152339614 152340062 ACGGAGATGAAGATGAGGTG 59 152340105 152340123 CTCCATAGCAGGAAGGGAG 59 NA Rattus norvegicus 81 Myoz2 ENSRNOG00000014815 ENSRNOT00000080215,ENSRNOT00000065361 1 2 2 80 2 227181288 227188186 CTTTAACAGAGTTGCCACTCC 59 227181228 227181246 CGTTCGAAGTCTGGAACCT 60 NA Rattus norvegicus 81 Rnf26 ENSRNOG00000007720 ENSRNOT00000010134 1 1 1 60 8 48448933 48448954 CTGAACATGATCTCTAACGGTC 59 48448894 48448913 CAATGGCACAGATGTCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Timm10b ENSRNOG00000000320 ENSRNOT00000000351 1 1 1 105 20 48309840 48309858 CTAGCTAGCTGTCCCTGAC 59 48309581 48309771 CTAGGTCTCCACCTTCCTG 59 NA InUTR Rattus norvegicus 81 Ppp2cb ENSRNOG00000015182 ENSRNOT00000020663 3 1 1 81 16 62282342 62282366 TATTCATGGGTGACTATGTAGACAG 60 62281410 62282304 GGATAGCGCACCTTTAATGC 60 NA Rattus norvegicus 81 RGD1564370 ENSRNOG00000033652 ENSRNOT00000043491 2 1 1 60 20 42842847 42842865 ACAGGTGAACTCGGAAGAC 59 42842887 42842907 ATTGGTCCTAATAGCTTCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1339 ENSRNOG00000059611 ENSRNOT00000081179 3 1 1 60 8 43920131 43920149 CCATTTCCTTTGGTGCCTG 59 43920089 43920108 TTGATGCCTCCAATGAAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100364116 ENSRNOG00000030426 ENSRNOT00000050041 2 1 1 60 20 8484549 8484569 ATCGTTTCCAGATGAGAATCC 58 8484590 8484609 ACAATCTCTGAAGGACTGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1193 ENSRNOG00000028864 ENSRNOT00000050206 1 1 1 60 8 21305640 21305664 CACTATCCAGTCATTATGAATCCTC 59 21305681 21305700 TGAACCACGATACCAGAACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC108572.1 ENSRNOG00000060412 ENSRNOT00000030174 3 1 1 82 20 2047153 2047176 TTCAGGAGAAGAGCATAGATACAC 60 2047217 2047348 GTGAAGGCTCCCATCTCAG 60 NA Rattus norvegicus 81 Olr1691 ENSRNOG00000047094 ENSRNOT00000052186 2 1 1 60 20 794609 794631 GCCAGATATTCTCTACAGTTCTC 58 794571 794595 GAGAAGACCTTAGTTTGACTTTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Qrsl1 ENSRNOG00000026049 ENSRNOT00000018892 2 1 1 80 20 48866969 48873461 GAGTTTGCCATGGGATCTG 59 48866907 48866928 TCTGTACTGCTTTGAATACGTC 59 NA Rattus norvegicus 81 Olr1675 ENSRNOG00000047267 ENSRNOT00000048277 3 1 1 60 20 34484 34505 GTAGTAACTCCTACACTGAACC 58 34445 34466 CCCTCTTTACATCCTTATTCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtf2e2 ENSRNOG00000014422 ENSRNOT00000058872 3 1 1 81 16 62114546 62114960 AGAAAGTGGCCTCTATTCAG 57 62114484 62114502 GCCAAGTGTTCATTGTGAG 57 NA Rattus norvegicus 81 Invs ENSRNOG00000008632 ENSRNOT00000011622 3 1 1 80 5 64175142 64175981 AGATCTACGGTTGTTCTCAGG 59 64176022 64176041 AACTGAGATGAAGCACAGGA 59 NA Rattus norvegicus 81 Adnp ENSRNOG00000010975 ENSRNOT00000014595 1 1 1 103 3 164946963 164964580 CAGCCAAGAAACTATGTTCCA 59 164946880 164946900 AGTATTCCAACCCAATGTCAC 58 NA InUTR Rattus norvegicus 81 AC111257.1 ENSRNOG00000046973 ENSRNOT00000080832,ENSRNOT00000057761 2 2 2 80 16 80911436 80912864 CCACCACTTCATAAAGGATATCG 59 80912902 80912922 GGCAGTCCTATTGTTGTACAC 59 NA Rattus norvegicus 81 Myom2 ENSRNOG00000011754 ENSRNOT00000015908 1 1 1 80 16 79598489 79598507 TTTACGAAACCGAGACACC 58 79598257 79598447 GGTCCTTCTTAGACAACTTGG 58 NA Rattus norvegicus 81 Pex14 ENSRNOG00000013498 ENSRNOT00000018167 2 1 1 82 5 165788513 165788531 GTCCAGGAGCTACTGAGAC 59 165785818 165788467 GTTGATGTGGTAGCCTTGG 59 NA Rattus norvegicus 81 Xkr7 ENSRNOG00000009180 ENSRNOT00000012156 2 1 1 145 3 148530535 148530553 GTCTGTTGGAGACCTTCCT 59 148531671 148531689 GTAGGATGCCAGTGTCCAG 60 NA DesignNoJunction Rattus norvegicus 81 Ppp1r1c ENSRNOG00000024990 ENSRNOT00000034769,ENSRNOT00000081338 2 2 2 80 3 66675267 66675287 TCCCTTGTGATTCTCAATGAG 58 66719385 66722390 TGCATTCTGGGATTCTTGTG 59 NA Rattus norvegicus 81 Atp9a ENSRNOG00000049484 ENSRNOT00000071672 1 1 1 82 3 165421979 165424512 GCATCAAGGTTTGGATGCT 59 165421915 165421934 GTTTCTGGTCACCAGATGTG 59 NA Rattus norvegicus 81 AABR07054909.1 ENSRNOG00000047007 ENSRNOT00000073650 3 1 1 80 3 173371755 173371777 TGAATCCTTCTCAGAAGAGTCTC 59 173371378 173371719 CCCAAATGTATCCTATAGCACTG 59 NA Rattus norvegicus 81 Capzb ENSRNOG00000007330 ENSRNOT00000083577,ENSRNOT00000010308 1 2 2 80 5 157730833 157731137 AAGTGCAGGAGAAGTCCAG 59 157731181 157731199 ATTTGTTGGTTTGCAGCCA 59 NA Rattus norvegicus 81 Defb11 ENSRNOG00000038151 ENSRNOT00000058063 3 1 1 84 16 75149579 75156272 ATGACACTCCAGTTGTTGG 58 75149513 75149532 TAACGGTAACAGTACCCTCC 59 NA Rattus norvegicus 81 AC127963.1 ENSRNOG00000048080 ENSRNOT00000075547 3 1 1 77 3 173838962 173838980 AAGAAACTCCTGGCTGACC 60 173838756 173838775 GATGATGTCTTCCTTCTCGG 58 NA DesignNoJunction Rattus norvegicus 81 Mfhas1 ENSRNOG00000011431 ENSRNOT00000015203 2 1 1 165 16 60205480 60205498 CCAAATCCACACGCTTTCC 60 60128248 60135491 AGAAAGTACGAAGGTACTTGGA 59 NA Rattus norvegicus 81 Efnb2 ENSRNOG00000014648 ENSRNOT00000019675 1 1 1 80 16 86669236 86669254 CTGGATAACCAGGAGGGAG 59 86669297 86670055 AGCAGAACTTGCATCTTGTC 59 NA Rattus norvegicus 81 Zgpat ENSRNOG00000014235 ENSRNOT00000019084 3 1 1 81 3 176879226 176879244 GCTTACTACAGACTGGCTC 57 176879289 176879541 TTGTCCACATCAGTGATCC 57 NA Rattus norvegicus 81 Dusp26 ENSRNOG00000011518 ENSRNOT00000015725 1 1 1 71 16 64801762 64801780 TTATCCATCGGGCACTGAG 59 64799578 64799596 CAGATCTGCTCACTCCCAC 60 NA DesignNoJunction Rattus norvegicus 81 Cnga2 ENSRNOG00000030119 ENSRNOT00000016415,ENSRNOT00000082752,ENSRNOT00000078635 2 3 3 81 16 69884410 69884431 CACTTCCTCAGAACTACAAAGG 59 69883494 69884368 CAGGCGAACAATCCTTTGG 60 NA Rattus norvegicus 81 Zfp385b ENSRNOG00000019065 ENSRNOT00000025803,ENSRNOT00000089065 2 2 2 82 3 64312319 64338474 GCTTTAACTCGGATAGCCAG 59 64312256 64312274 TTTCGTTGCCTCTAGAGCT 59 NA Rattus norvegicus 81 LOC103695172 ENSRNOG00000032195 ENSRNOT00000040114 3 1 1 90 3 59837457 59839837 CTTGTAACTGATTGCCAGC 57 59839891 59839909 CCTCTGCTTCTTCCAAGTC 58 NA Rattus norvegicus 81 Chn1 ENSRNOG00000017939 ENSRNOT00000068745 2 1 1 80 3 60535994 60536012 ACTGGTGTGAATACTGTGC 58 60526497 60535952 GAACATTCAACCCACAATCTG 58 NA Rattus norvegicus 81 Mmp24 ENSRNOG00000047028 ENSRNOT00000092194,ENSRNOT00000073642 2 2 2 80 3 151335594 151344765 CAACCATGATGGCAATGAC 57 151344808 151344827 GGGTCATTAGAGTGTTCCAG 58 NA Rattus norvegicus 81 Olr716 ENSRNOG00000046907 ENSRNOT00000074631 2 1 1 80 3 78621123 78621142 CCGATGTACTTCTTCCTTGC 59 78620823 78621083 GTCTACAATCAACTTGGGTGAG 59 NA Rattus norvegicus 81 Csmd1 ENSRNOG00000030719 ENSRNOT00000057897 2 1 1 80 16 78677305 78677325 CTTGGCAGAATTGTTTGATGG 59 78677366 78678586 AGTGTTTCACCTGAATGGGA 59 NA Rattus norvegicus 81 Slc38a11 ENSRNOG00000004966 ENSRNOT00000058962,ENSRNOT00000034141,ENSRNOT00000006634 3 3 3 83 3 51416119 51416137 AACACGGAGGGAAATCGAG 60 51414131 51416074 AGGGCAATCCTATTATCCCAG 59 NA Rattus norvegicus 81 Wfdc15b ENSRNOG00000028779 ENSRNOT00000047560 1 1 1 80 3 160608168 160608187 CTCCCTCTACTCACAGTGAC 59 160607965 160608128 TTTGGATAAAGCCTTCTTCCTC 59 NA Rattus norvegicus 81 F7 ENSRNOG00000032737 ENSRNOT00000037806 3 1 1 80 16 81829555 81829650 TGGACTATTTACAGCGATGG 58 81829494 81829512 AGACTTGAGGTGATCCTGG 58 NA Rattus norvegicus 81 LOC100360051 ENSRNOG00000039432 ENSRNOT00000060424 1 1 1 122 15 31709588 31709608 GTGCATAACAATCTGTACTGG 57 31709852 31709870 CTTCACTTGCTCACCTTGG 59 NA DesignNoJunction Rattus norvegicus 81 Ces2a ENSRNOG00000047669 ENSRNOT00000072935 1 1 1 114 19 37046671 37046691 CATCTTGAAGCCAACTACCTC 59 37046766 37047863 TGAGGTCAAATTTCATGCCC 59 NA Rattus norvegicus 81 AABR07073021.1 ENSRNOG00000056364 ENSRNOT00000082771 2 1 1 81 4 82069789 82076535 CCTTGCCTTCTAAGCTCAG 58 82076580 82076598 ATGGTTAACAGGGATCCCA 58 NA Rattus norvegicus 81 Mbnl1 ENSRNOG00000014076 ENSRNOT00000088461 3 1 2 81 2 150858395 150858414 TTTCCAATACCAACAGGCTC 58 150858457 150864102 CATGCACAATATTGAGCCTG 58 NA Rattus norvegicus 81 Cers2 ENSRNOG00000021138 ENSRNOT00000028699 1 1 2 80 2 196494760 196494779 CAGATGCTCCATGTCTTCTG 59 196494820 196495004 TTCATCTTCTACCAGCTTTCC 58 NA Rattus norvegicus 81 Vav3 ENSRNOG00000020485 ENSRNOT00000027813 3 1 2 80 2 212564685 212564704 ACAGTTTCCATACAAGGAGC 58 212564747 212582941 ACTTTGGGACTTAGCAAGC 58 NA Rattus norvegicus 81 Iqsec2 ENSRNOG00000058975 ENSRNOT00000085263,ENSRNOT00000080331,ENSRNOT00000079802 3 3 5 95 X 22286082 22288504 ATGACCTCCTTGTGGTCAC 59 22288562 22288581 GCATATGCATTTCCACCAGG 60 NA Rattus norvegicus 81 Osmr ENSRNOG00000033192 ENSRNOT00000040847 1 1 2 80 2 56123073 56123091 CATCTCAGCCAACAACAGC 60 56121600 56123029 TGGACCTTCTCATGTCCAG 59 NA Rattus norvegicus 81 Fam3a ENSRNOG00000060623 ENSRNOT00000091147,ENSRNOT00000079378 1 2 2 80 X 156326538 156327608 TTGAGCAGCATATGAAGAACAG 59 156327647 156327667 GAATACAGCCTTCCATCTCCA 60 NA Rattus norvegicus 81 Slmap ENSRNOG00000011307 ENSRNOT00000089377,ENSRNOT00000067464 2 2 3 108 16 2142311 2158123 ACAGCTTTACAAGAGAAGCT 57 2138559 2138580 CTGATAAGTCAGATTCCTTTGC 57 NA Rattus norvegicus 81 Elovl1 ENSRNOG00000028448 ENSRNOT00000088022,ENSRNOT00000037160 3 2 2 80 5 137259402 137259500 GATAAAGATTGCTCCAGGAGG 58 137259540 137259560 TAGTAGAGGTACATGACGACG 59 NA Rattus norvegicus 81 Zdhhc20 ENSRNOG00000011024 ENSRNOT00000014820 2 1 2 164 15 38117329 38117348 AATTGGCGACAAGTCTTTGG 60 38113895 38115016 CCTCTGCAGTTTAGATCTTCTG 59 NA Rattus norvegicus 81 Timm10b ENSRNOG00000050846 ENSRNOT00000075892,ENSRNOT00000075597,ENSRNOT00000076631 2 3 3 147 1 170471305 170471466 AACTGAGAAACTTGCGAGAC 59 170471745 170471763 GAATGGATGAGCTTCCCAG 58 NA Rattus norvegicus 81 Timm10b ENSRNOG00000050846 ENSRNOT00000075892,ENSRNOT00000075597,ENSRNOT00000076631 3 3 3 147 1 170471306 170471466 ACTGAGAAACTTGCGAGAC 58 170471746 170471764 AGAATGGATGAGCTTCCCA 58 NA Rattus norvegicus 81 Fdps ENSRNOG00000043377 ENSRNOT00000033917 2 1 3 80 2 188399529 188399653 GAAGAAAGGTCTCCTGATAGC 58 188399469 188399487 TGAACCAAGTTCCTAGCAG 57 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000052129 2 1 6 80 1 76721490 76721510 CTCATAACCTCCCATCTTCCC 60 76555696 76721452 TCTGATGAGATAGATCACCTTGG 59 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000002046 1 1 6 80 1 76530913 76530933 AATCTCATGGAGAAGGAACTG 58 76252518 76392717 GAAGTGATTCTTCCAGTCCC 58 NA Rattus norvegicus 81 Mier3 ENSRNOG00000013121 ENSRNOT00000087031,ENSRNOT00000017571 2 2 2 80 2 43290923 43290943 AACGCTACGATTACTTTGCTC 59 43290984 43291083 CCATATAGTCCGTAACGCCA 60 NA Rattus norvegicus 81 Bdp1 ENSRNOG00000017864 ENSRNOT00000076991,ENSRNOT00000024023 2 2 2 81 2 30314082 30319940 ATAGACAAAGCCTTCCAGGA 59 30314020 30314041 CTTCTTCAGCAAGAACTTTCTG 58 NA Rattus norvegicus 81 Cdkl5 ENSRNOG00000003742 ENSRNOT00000072627 3 1 2 80 X 35721928 35771516 ATCTACAGACCCAGATTCCC 58 35771559 35771577 ACTCGACGTTTATGCAACC 59 NA Rattus norvegicus 81 Slc6a9 ENSRNOG00000019484 ENSRNOT00000048770 2 1 2 91 5 136677479 136690057 CAAAGGGATGCTGAATGGTG 60 136690111 136690129 CAAACTCGATCTGGTTGCC 59 NA Rattus norvegicus 81 Stmn4 ENSRNOG00000053334 ENSRNOT00000091567 2 1 3 80 15 43022247 43022269 CAGAAGATGGAGTCCAATAAGGA 60 43022309 43025271 GTGCTTGTCCTTCTCTTGC 59 NA Rattus norvegicus 81 Rbm42 ENSRNOG00000024278 ENSRNOT00000031254 3 1 2 110 1 89106778 89106796 GAGAGGCCATGTTCCTGAG 60 89105107 89105204 CAGAAGAAAGAGCAGAATCTGC 60 NA Rattus norvegicus 81 Kdsr ENSRNOG00000002781 ENSRNOT00000003728 3 1 2 87 13 26807850 26812098 CACGTAGTGGTCACAGGAG 60 26807781 26807802 CAACCAGAGTTATAAACGCTCC 60 NA Rattus norvegicus 81 Cblb ENSRNOG00000001982 ENSRNOT00000077220 3 1 2 80 11 51054721 51057266 CTCCATTAGGTGAAGATGCT 57 51054660 51054679 CGATGAGACTATGTCTTGCA 58 NA Rattus norvegicus 81 Spast ENSRNOG00000027136 ENSRNOT00000079137 2 1 2 80 6 22263038 22263056 TTTCCAAGTCACAAACGGA 58 22257355 22262994 CTCCACTTTCTGACTGGAG 57 NA Rattus norvegicus 81 Simc1 ENSRNOG00000016932 ENSRNOT00000022980 3 1 3 80 17 10617659 10618270 GTATGAATCGTTAACGCTGC 58 10617598 10617617 TCCTCCATGACATAGGTGAG 58 NA Rattus norvegicus 81 Negr1 ENSRNOG00000021410 ENSRNOT00000029312 3 1 2 93 2 263069233 263212031 GAGAAACAGTCCCTCCCTC 59 263212087 263212106 ATACTTGACCTGTTGAGCCA 59 NA Rattus norvegicus 81 Zcchc2 ENSRNOG00000002882 ENSRNOT00000003870,ENSRNOT00000086167 3 2 3 80 13 26010248 26010266 CAATTGTGGTGTAAGCGGA 59 26010310 26012969 AGTCTGTAAGTGCCTTGCT 59 NA Rattus norvegicus 81 Sema3e ENSRNOG00000006631 ENSRNOT00000008936 1 1 2 90 4 17439854 17593896 GTCTCATAAAGAACTCTTGGAACTG 60 17439788 17439806 CTCATCCAGCAGCATTGTG 59 NA Rattus norvegicus 81 Pogz ENSRNOG00000053599 ENSRNOT00000082849 3 1 2 105 2 196013915 196015825 AAACTACTCCCGTTTCTGTG 58 196015888 196015911 CTACTAACAGTAGTGGATGTAGAG 58 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000049859,ENSRNOT00000047817,ENSRNOT00000002220,ENSRNOT00000002223,ENSRNOT00000070871,ENSRNOT00000072140 1 6 7 80 11 46301817 46301837 GAAACATTGGCTTTACCAGCA 60 46299853 46301776 TTCCGGAGTCACTGTTACTG 60 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000049859,ENSRNOT00000047817,ENSRNOT00000002220,ENSRNOT00000002223,ENSRNOT00000070871,ENSRNOT00000072140 3 6 7 83 11 46301816 46301835 AACATTGGCTTTACCAGCAG 59 46299848 46301770 ACTGTTTCCGGAGTCACTG 60 NA Rattus norvegicus 81 Asph ENSRNOG00000007445 ENSRNOT00000047805,ENSRNOT00000079432 3 2 3 80 5 22747114 22749239 AGGCTAAAGTTAAAGAACCCAC 59 22747055 22747073 TTCCCTCTTCAGTCTTGCT 58 NA Rattus norvegicus 81 Nrg2 ENSRNOG00000019093 ENSRNOT00000028713,ENSRNOT00000025902 3 2 2 80 18 28850548 28856230 CAACTCTCCTGCAAATGTCC 59 28850487 28850505 ATCTGGCATGTACAATCGC 58 NA Rattus norvegicus 81 Cep162 ENSRNOG00000010608 ENSRNOT00000014165,ENSRNOT00000083934 2 2 2 80 8 94866146 94866167 GCTTAGAAAGGAAGATCAAGCA 59 94864705 94866108 GTGTTTGCTGTATTATCTGCTG 58 NA Rattus norvegicus 81 F12 ENSRNOG00000015139 ENSRNOT00000066586,ENSRNOT00000081920 3 2 2 80 17 9737244 9739460 CGATCCCTCTGTGGTTCTC 60 9739504 9739522 CATTTGTGGTACAGGCGAC 59 NA Rattus norvegicus 81 Dmrt1 ENSRNOG00000016075 ENSRNOT00000021779,ENSRNOT00000085356 2 2 2 106 1 243518367 243534146 CAGTGGCAGATGAAGACCT 59 243534216 243534234 ATCTGGGACATGCTCTGAC 59 NA Rattus norvegicus 81 Setdb2 ENSRNOG00000021680 ENSRNOT00000071919 2 1 3 80 15 39738591 39738612 GTTTGAGAAAGCACAAGATGTC 59 39732057 39738553 GGTGTATGATCTCCATTTGTGG 59 NA Rattus norvegicus 81 Nptn ENSRNOG00000009029 ENSRNOT00000012091 3 1 2 82 8 63414792 63414810 AACGGAATGACTTGAGGCA 60 63414853 63419554 AATTCTTGGTTTCTGAAGGACG 59 NA Rattus norvegicus 81 Zp2 ENSRNOG00000057989 ENSRNOT00000080996,ENSRNOT00000088536 2 2 2 80 1 189903060 189903079 AAAGCCATTCTTCTCCAGTG 58 189902860 189903019 GGTAGGATATGTCTGGGTAGG 59 NA Rattus norvegicus 81 Lca5 ENSRNOG00000009580 ENSRNOT00000086426 1 1 3 154 8 90958758 90958776 AGTGAAAGACACAGAAGGG 57 90958620 90958643 CTTAATCTTTCTCGGTGTTGTC 58 NA Rattus norvegicus 81 Lca5 ENSRNOG00000009580 ENSRNOT00000086426 2 1 3 155 8 90958758 90958777 GAGTGAAAGACACAGAAGGG 58 90958620 90958643 CTTAATCTTTCTCGGTGTTGTC 58 NA Rattus norvegicus 81 Ctnna1 ENSRNOG00000005796 ENSRNOT00000008041,ENSRNOT00000080999 3 2 2 80 18 27977856 27978329 AGCTGAAAGTTGTGGAAGAC 59 27978371 27978390 GAGCTCTGTACTGTATCCCT 58 NA Rattus norvegicus 81 Prl7d1 ENSRNOG00000016510 ENSRNOT00000081739,ENSRNOT00000022251 2 2 2 81 17 38998195 38998213 AAAGGCCAAAGCCATTGAG 59 38998256 38999351 GATTGCAGGATTAACCATGGA 59 NA Rattus norvegicus 81 Htr5a ENSRNOG00000007066 ENSRNOT00000009317 2 1 1 60 4 200782 200800 CATACCTGAAGCTGTGGAG 58 208552 208570 GACAGTGAACACCATCTGG 58 NA DesignNoJunction Rattus norvegicus 81 Mtmr6 ENSRNOG00000012918 ENSRNOT00000065328 1 1 2 80 15 40584594 40584615 TGCTTCAAGCCATTAGTAAAGC 60 40584656 40586956 CCATTGCATTGAGCTTGGG 60 NA Rattus norvegicus 81 MGC116197 ENSRNOG00000033341 ENSRNOT00000089904 1 1 2 80 9 9143108 9143126 AGGCAGAAGGAAGATGACC 59 9142325 9143065 CTTCCTACCAAATCCAAGCC 59 NA Rattus norvegicus 81 LOC100361087 ENSRNOG00000042929 ENSRNOT00000032218 3 1 2 83 13 88725554 88868191 GAATCCGGTATGAGTTTAAAGCC 60 88725493 88725512 GAATCACTTTGACACCGTCC 59 NA Rattus norvegicus 81 Prl8a5 ENSRNOG00000016871 ENSRNOT00000080680,ENSRNOT00000022705,ENSRNOT00000022659 1 3 5 80 17 39411784 39413111 CCTTCCTTCTTTGGCACAC 59 39413154 39413173 ACATGCAGGAATTGATGCAG 59 NA Rattus norvegicus 81 Ppp2r3a ENSRNOG00000022999 ENSRNOT00000010320,ENSRNOT00000087334,ENSRNOT00000087398 3 3 3 80 8 109511343 109511362 GAGGGAAGAATGAGCTATGC 58 109502105 109511301 ATACTCAATGCTGGTAGGGT 58 NA Rattus norvegicus 81 Abcg1 ENSRNOG00000001158 ENSRNOT00000001533,ENSRNOT00000083505,ENSRNOT00000078031 1 3 3 84 20 9749958 9776142 GGAAGAAAGGATACAAGACCCT 60 9776187 9776205 CCAGAAGGACCCATGATGG 60 NA Rattus norvegicus 81 Cyb5r2 ENSRNOG00000019751 ENSRNOT00000079844 1 1 2 117 1 171975720 171975740 GCCTGTTCTATAATGAGCCAG 59 171974221 171975084 GTTTCCTCAAACCCTGTGC 59 NA Rattus norvegicus 81 Gon4l ENSRNOG00000020297 ENSRNOT00000078913 1 1 3 87 2 188174021 188174039 GACTTTCGAACTGACCGTG 59 188174892 188180294 CTACAGATTGCACCGTCTC 58 NA Rattus norvegicus 81 Atxn7l4 ENSRNOG00000010415 ENSRNOT00000013842 1 1 4 80 6 52667519 52668875 GATGTGGAAGCACAGAAGC 59 52668919 52668937 GACAGCAGATTGGTTAGGC 59 NA Rattus norvegicus 81 Atxn7l4 ENSRNOG00000010415 ENSRNOT00000076183,ENSRNOT00000014054 1 2 4 80 6 52667460 52667478 AGATGGGATCGATTTCGCT 59 52667522 52671505 AGGAGGGATCTTCTTCCAC 58 NA Rattus norvegicus 81 Atxn7l4 ENSRNOG00000010415 ENSRNOT00000076183,ENSRNOT00000014054 2 2 4 80 6 52667456 52667476 TAGAAGATGGGATCGATTTCG 58 52667517 52671501 GGGATCTTCTTCCACATCTG 58 NA Rattus norvegicus 81 Aspscr1 ENSRNOG00000036678 ENSRNOT00000054944 3 1 2 86 10 109883584 109883602 TCACCAGAGATGGAGTGGA 60 109884232 109888575 GAAGAGGTTTGCCTGAAAGAG 59 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000068415 1 1 10 98 2 231333162 231333180 CACACCATACATGTGGCTG 59 231329847 231333100 GGGCGGCATAATGTTAGTG 59 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000068415 3 1 10 100 2 231333164 231333182 CTCACACCATACATGTGGC 59 231329847 231333100 GGGCGGCATAATGTTAGTG 59 NA Rattus norvegicus 81 Syt3 ENSRNOG00000019318 ENSRNOT00000026251 1 1 2 83 1 100404083 100404212 TCACTGGTTTCTCAGACCC 59 100404258 100404277 TCTTAATGGAGGTCTTCCGT 58 NA Rattus norvegicus 81 Fsd2 ENSRNOG00000019278 ENSRNOT00000026089,ENSRNOT00000078916 1 2 2 80 1 143374932 143378415 GGGTAACTGAATCTGTTGTAGG 59 143374873 143374891 CGTAGATCGTGTAGCTGTG 58 NA Rattus norvegicus 81 Sbk1 ENSRNOG00000019082 ENSRNOT00000025808 3 1 1 83 1 67373387 67373405 CTGGGTAAAGGGACCTACG 59 67372312 67372333 CTTATTCACAAATTTCAGGGCC 58 NA DesignNoJunction Rattus norvegicus 81 Gatad2b ENSRNOG00000015553 ENSRNOT00000021502,ENSRNOT00000086285 2 2 2 80 2 189725105 189725123 CGAAACCTGGCATTGTACG 60 189725164 189725910 GAACAGAAGAACTTGACTGTGG 60 NA Rattus norvegicus 81 RGD1310352 ENSRNOG00000006148 ENSRNOT00000008119,ENSRNOT00000087555 1 2 2 90 10 37757310 37764327 CTGTGCTATGGTATACCAGAG 58 37764379 37764397 GGGAAACAGAAGGTTTGGT 58 NA Rattus norvegicus 81 Brd3 ENSRNOG00000007681 ENSRNOT00000065867,ENSRNOT00000084491 3 2 2 81 3 6013942 6013962 AAGACACTCTGGAAACATCAG 58 6013122 6013902 TATGATAATCAGGCAGGTTCAG 58 NA Rattus norvegicus 81 Slc22a5 ENSRNOG00000008432 ENSRNOT00000086644 1 1 4 98 10 39220332 39220351 TAAGGATGACTGGAAAGCCC 60 39211328 39220272 CTCCAGTCTCTGTCTGAGAG 59 NA Rattus norvegicus 81 Rpgrip1 ENSRNOG00000011809 ENSRNOT00000076459 1 1 2 80 15 28554769 28554788 AATAAGCGAAAGAAAGCCCA 58 28554829 28556329 GGATCTGGACTCATCATTCTG 58 NA Rattus norvegicus 81 P4ha2 ENSRNOG00000033663 ENSRNOT00000042144 1 1 2 97 10 39458788 39459333 CTTCTCGAGGAGCGATGAG 60 39461591 39461610 CACCAGCTTCAACATCACTC 59 NA Rattus norvegicus 81 P4ha2 ENSRNOG00000033663 ENSRNOT00000042144 2 1 2 98 10 39458788 39459333 CTTCTCGAGGAGCGATGAG 60 39461593 39461611 CCACCAGCTTCAACATCAC 59 NA Rattus norvegicus 81 Sh3gl3 ENSRNOG00000019776 ENSRNOT00000026870,ENSRNOT00000079989 3 2 2 80 1 144176521 144176539 GGCGTTAGACTATCACAGG 57 144176583 144177623 GATGCAAGAGCTATTCGCA 58 NA Rattus norvegicus 81 Mapk9 ENSRNOG00000002823 ENSRNOT00000003987,ENSRNOT00000083688 1 2 3 80 10 35361925 35361947 TATGTGGTAACTCGCTACTATCG 60 35361982 35363423 CACTGACCAGATATCAACATTCTC 59 NA Rattus norvegicus 81 Mapk9 ENSRNOG00000002823 ENSRNOT00000004010 3 1 3 80 10 35361921 35361939 TCCCTATGTGGTAACTCGC 59 35361982 35363000 GACCAGATGTCCACATTCTC 58 NA Rattus norvegicus 81 Mapk9 ENSRNOG00000002823 ENSRNOT00000003987,ENSRNOT00000083688 2 2 3 80 10 35361918 35361938 GACTCCCTATGTGGTAACTCG 60 35361974 35363416 CAGATATCAACATTCTCCTTGTAGC 60 NA Rattus norvegicus 81 Mmd ENSRNOG00000002436 ENSRNOT00000087765,ENSRNOT00000086969,ENSRNOT00000003308 1 3 3 80 10 77772731 77781813 CATCAATGAATAACACTGACGG 58 77781854 77781872 TCTTGAAGAACACGACTCC 57 NA Rattus norvegicus 81 Map2k7 ENSRNOG00000001047 ENSRNOT00000084460 2 1 2 83 12 2555096 2555114 GAAGCAGGAGAATCGTGAG 58 2553387 2555049 ATCACAATAATGGGCCTGG 58 NA Rattus norvegicus 81 Phf1 ENSRNOG00000000480 ENSRNOT00000059548,ENSRNOT00000091364 3 2 2 80 20 5530005 5530023 TTCAGACACTCCCAAAGGA 58 5530067 5530180 CTCCCTGAAATGAAACGGT 58 NA Rattus norvegicus 81 Scn2a ENSRNOG00000005018 ENSRNOT00000087242 3 1 2 81 3 51750101 51751031 ATATCAGTCATTCCAGGCCT 58 51751074 51751093 TGAGGATCATGACGTCAGAG 59 NA Rattus norvegicus 81 Ewsr1 ENSRNOG00000009437 ENSRNOT00000083464 2 1 2 82 14 85343700 85343718 TATACCCAGGCTCAGAGCA 60 85343265 85343654 GTCCCTTCTACAGTGGGAG 59 NA Rattus norvegicus 81 Dlg4 ENSRNOG00000018526 ENSRNOT00000089108 3 1 2 80 10 56640028 56640048 GATCAAACTCATCAAAGGGCC 60 56640194 56640215 CTGTTATCTCCAGGGATGCT 59 NA Rattus norvegicus 81 Ddx56 ENSRNOG00000004670 ENSRNOT00000089384,ENSRNOT00000006642 3 2 2 84 14 86379278 86379589 TCTCTAGAAAGGCTAAGAAGGTG 59 86379216 86379234 TTTGCTGTGGGTTTAGGCT 60 NA Rattus norvegicus 81 Arhgef7 ENSRNOG00000012934 ENSRNOT00000017947 3 1 2 90 16 83019512 83019530 GAGGAAGACGCTCAGATCC 60 83010196 83019459 ACTCTTTGCGTGAACTTGAG 59 NA Rattus norvegicus 81 Nr1i3 ENSRNOG00000003260 ENSRNOT00000049873 2 1 2 80 13 89589433 89589451 GTTCTGCCTTCAAACACAG 57 89589495 89589604 TACTGGAACCCTACATGGA 57 NA Rattus norvegicus 81 Sf3a3 ENSRNOG00000007629 ENSRNOT00000085986,ENSRNOT00000010373 1 2 3 80 5 142707161 142707182 ATATGGTCGCTACCTTGATCTC 60 142707220 142710279 GTGATGTAATCCAGCTTCTCAG 59 NA Rattus norvegicus 81 Fgf1 ENSRNOG00000013867 ENSRNOT00000087408,ENSRNOT00000018577 2 2 2 175 18 32340785 32340803 TGAGGATTCTTCCCGATGG 59 32351714 32356444 TTCATTTGGTGTCTGCGAG 59 NA Rattus norvegicus 81 Nvl ENSRNOG00000003629 ENSRNOT00000004927 2 1 2 80 13 99413568 99415188 GTTGTGATTGCTATACGGGTG 60 99413508 99413529 CTGTTATTTCTTGTCTCAGGGC 59 NA Rattus norvegicus 81 Abcc3 ENSRNOG00000002948 ENSRNOT00000051497 2 1 4 82 10 82095130 82095148 TTCTGAGGGCTTTGGTGAG 60 82095062 82095085 TGATGAAGGAGAGTCCTGGA 60 NA Rattus norvegicus 81 Rmdn1 ENSRNOG00000025145 ENSRNOT00000092054 3 1 2 83 5 33603195 33603213 AAAGCTTGCTGCATTCTGG 59 33603259 33637915 TCTGGTTTCCAGAGTCTCTG 59 NA Rattus norvegicus 81 Zfp330 ENSRNOG00000003461 ENSRNOT00000080337,ENSRNOT00000004614 3 2 2 80 19 23937395 23937792 TTAGCATGTCAACACGCTC 59 23937333 23937351 AAGCATCATACCCAGAAGC 58 NA Rattus norvegicus 81 Ints8 ENSRNOG00000008124 ENSRNOT00000081395,ENSRNOT00000010789 3 2 2 80 5 24454642 24457631 ATTTACTTTGCCACCAACCAG 60 24454582 24454602 ATTGAAGAAGTCAGAGCACAC 59 NA Rattus norvegicus 81 Hectd2 ENSRNOG00000056753 ENSRNOT00000083002,ENSRNOT00000086991 3 2 2 81 1 255237815 255238600 TCACTTGATGAGCTGACCC 59 255238644 255238663 TATCCAAACCAGCTTCACCT 59 NA Rattus norvegicus 81 Smox ENSRNOG00000021255 ENSRNOT00000079264,ENSRNOT00000028876 2 2 2 80 3 124088653 124093235 GAGCGTGAAACTTGGACAC 60 124093277 124093297 AGTTGATAGATAGGGTTCCCG 59 NA Rattus norvegicus 81 Abcb1a ENSRNOG00000008012 ENSRNOT00000037712,ENSRNOT00000047126,ENSRNOT00000011166,ENSRNOT00000082359 1 4 5 127 4 22380964 22380982 CAACCTGAAGGTGAAGAGC 59 22280193 22380873 GTCCGTCGATACTGACCTC 59 NA Rattus norvegicus 81 Asgr2 ENSRNOG00000030726 ENSRNOT00000087121 1 1 3 135 10 56716968 56716986 TAACTGGGTGGAGTTTGGT 59 56717084 56717180 GAAGAATTACTGCTCCTCCC 58 NA Rattus norvegicus 81 Tmem47 ENSRNOG00000030418 ENSRNOT00000058434 2 1 1 69 X 48792453 48792471 TTCTACCGACCTGTTGCTG 60 48802126 48802144 GATAAAGGACCAGGCTGCA 60 NA DesignNoJunction Rattus norvegicus 81 Rtn3 ENSRNOG00000021202 ENSRNOT00000049812 2 1 2 139 1 222734017 222734035 CACTCAGTCTCCGTCAGTC 60 222686578 222733914 AAATCAGATCATGCACCGC 59 NA Rattus norvegicus 81 Slu7 ENSRNOG00000003822 ENSRNOT00000005132,ENSRNOT00000088322 2 2 2 80 10 29039364 29039705 CAAACACAACTGTTTGCGTG 59 29039748 29039766 CAGCTCGAGTTTGGTAGGA 59 NA Rattus norvegicus 81 Lrrc16a ENSRNOG00000016576 ENSRNOT00000059510 2 1 2 80 17 43329423 43329441 TCTCCTTGGACAAAGAGCG 60 43329484 43338399 TTCTCCTTGAGACTTCCTGG 59 NA Rattus norvegicus 81 Hnrnpab ENSRNOG00000003645 ENSRNOT00000004885 1 1 2 80 10 34957454 34957472 CAACAGCAGTATGGCTCTG 59 34956712 34957411 CCAACTCTGACTCTGACCTC 60 NA Rattus norvegicus 81 AC141526.1 ENSRNOG00000046724 ENSRNOT00000070888 2 1 1 61 1 89132847 89132866 TTCCTACCCTTAGGAGTGGT 59 89132637 89132655 CTCTGATTGGCTCCGTAGG 60 NA DesignNoJunction Rattus norvegicus 81 Zbtb10 ENSRNOG00000061862 ENSRNOT00000087598,ENSRNOT00000081553 3 2 2 80 2 94717206 94720814 CTGGTGGGAAATGAGTCAG 58 94717144 94717164 GCAATAGGAGTTCTCATTTGG 57 NA Rattus norvegicus 81 Tf ENSRNOG00000030625 ENSRNOT00000045628 2 1 2 80 8 111696176 111696199 CATATGAAGAGTACTTAGGAGCAG 58 111694757 111696137 CTTCTAGGAGTCGTGAGGT 58 NA Rattus norvegicus 81 Prpf4b ENSRNOG00000016705 ENSRNOT00000081993 3 1 2 85 17 30705716 30706094 TTAAGAGTGAAGAGAAAGGCAG 58 30705652 30705670 AGAAGAAAGCCGTCTCCTC 59 NA Rattus norvegicus 81 Kif3a ENSRNOG00000007515 ENSRNOT00000009999 2 1 2 87 10 38949859 38949877 GAGTTTGCGTCAGTCTCTG 59 38949928 38951878 AGAACGCTTTCTTCTACCG 58 NA Rattus norvegicus 81 LOC100365902 ENSRNOG00000025383 ENSRNOT00000088802 1 1 2 117 X 37336868 37337313 TATCGTTGGACCTCACGTG 60 37337393 37338283 TATCTGACCCTGGTTAGCAG 59 NA Rattus norvegicus 81 Cntn4 ENSRNOG00000005652 ENSRNOT00000007788,ENSRNOT00000090847 1 2 2 80 4 138701646 138745880 AATGTGGTTGTGAAAGACCC 59 138745922 138745941 AAGAACAATGCTTTCTCCCA 58 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000088308,ENSRNOT00000091225,ENSRNOT00000083413 1 3 9 99 20 2087658 2087969 TTCTGAGCACTTGAAAGCG 59 2087577 2087595 GTAATCAGGTTGGCTGCTG 59 NA Rattus norvegicus 81 Slc8a1 ENSRNOG00000008479 ENSRNOT00000043870 3 1 6 81 6 4315010 4315031 GAGGAATATGAGAAAGAGTGCA 58 4312316 4314968 ACAACAGGGCTTTCATTCC 58 NA Rattus norvegicus 81 Gsto2 ENSRNOG00000012801 ENSRNOT00000087894 2 1 4 80 1 267607689 267607708 TACAGCATGAGGTTCTGTCC 60 267607750 267627773 GTTGATGATTTCATGCCGGA 59 NA Rattus norvegicus 81 Myo9a ENSRNOG00000011619 ENSRNOT00000015963 2 1 2 81 8 64763744 64763763 AAAGACATCAGTAGCCTGGA 59 64763804 64765600 GGACAGGTTTCATTGATCTACG 59 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 2 10 10 74 18 30188421 30188439 AGTATCCAGTGCAACACCA 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 2 10 10 74 18 30188421 30188439 AGTATCCAGTGCAACACCA 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Rps6kb2 ENSRNOG00000021689 ENSRNOT00000029580,ENSRNOT00000083204 3 2 2 81 1 219410366 219411830 GAAAGTCTTGAGAAAGGCCA 58 219410304 219410324 CGATTCTAGAATGTTCCGCTC 59 NA Rattus norvegicus 81 Mta1 ENSRNOG00000004711 ENSRNOT00000046456 2 1 2 80 6 137946271 137946289 CCCTGTCATCAACAATGGC 59 137946333 137948806 TTTGCCAGACCATCTACCC 59 NA Rattus norvegicus 81 P2rx2 ENSRNOG00000037456 ENSRNOT00000085661,ENSRNOT00000056694,ENSRNOT00000056693,ENSRNOT00000056692,ENSRNOT00000081447 2 5 5 132 12 52398218 52398236 GAAGACAAAGTGTGGGACG 59 52398429 52398526 TGTGAACCCTCATGCTCTC 59 NA InUTR Rattus norvegicus 81 Cyp2j10 ENSRNOG00000042224 ENSRNOT00000045686 3 1 4 88 5 115095226 115184022 CTCAATCCAGCCGTTTGTG 60 115095156 115095174 AGGGCAGTCCAGTTATGAC 59 NA Rattus norvegicus 81 Acpp ENSRNOG00000011820 ENSRNOT00000085585,ENSRNOT00000016222 2 2 2 80 8 112854999 112857439 ATCATGTATTCTGCACACGA 57 112854938 112854956 GTAGGGAGGTAGAAGTCCA 57 NA Rattus norvegicus 81 Nprl3 ENSRNOG00000020541 ENSRNOT00000066430 1 1 2 80 10 15629981 15629999 ACGTAGCAGATACGCTGTC 60 15630041 15637128 AGAATAGCATCCGAGAACCTG 60 NA Rattus norvegicus 81 Pfkfb2 ENSRNOG00000004162 ENSRNOT00000037679,ENSRNOT00000005729,ENSRNOT00000050354,ENSRNOT00000050859 3 4 5 80 13 47426325 47429302 AGACAACTATGATAAGGACCTCTC 59 47426268 47426288 TAGTCCTGAACTCTGTTGACC 59 NA Rattus norvegicus 81 Glra1 ENSRNOG00000013588 ENSRNOT00000092189 2 1 2 96 10 40913738 40953419 TTCTTCAGGTCCTCCTGTG 59 40877914 40877934 GAAGATGTTGACCCTGTAGTC 58 NA Rattus norvegicus 81 Rgs17 ENSRNOG00000018690 ENSRNOT00000025355,ENSRNOT00000083225 3 2 2 87 1 42494549 42508968 TGTCACCGAAAGAGGTCAG 59 42494480 42494498 TCTTCGTACATGTGAGGGC 60 NA Rattus norvegicus 81 Ergic2 ENSRNOG00000001852 ENSRNOT00000067970,ENSRNOT00000079291 2 2 2 82 4 182594138 182594159 TGAAAGAGTTAGATGCCTTTCC 59 182592588 182594098 TGCTATTAGAGAAACTGTTCCC 58 NA Rattus norvegicus 81 Myh11 ENSRNOG00000057880 ENSRNOT00000084608,ENSRNOT00000087567 2 2 2 80 10 831376 833074 TCACTAAAGTAAAGCCGCTG 58 833116 833135 TGATCTTCTGCATCTCCTCC 59 NA Rattus norvegicus 81 Epb41l2 ENSRNOG00000012346 ENSRNOT00000017322,ENSRNOT00000017412 3 2 5 82 1 20903363 20916110 GCTGAGGGAAAGAGTTCAC 58 20903299 20903317 ATTACGCTTTCGCCTTTCC 59 NA Rattus norvegicus 81 Rab13 ENSRNOG00000016733 ENSRNOT00000092112,ENSRNOT00000022627 2 2 2 93 2 189583038 189583058 GAGAATCAAACTGCAAGTCTG 58 189584345 189584579 TAGGATAATGCCCATGGCT 58 NA Rattus norvegicus 81 Pdk3 ENSRNOG00000012513 ENSRNOT00000076652,ENSRNOT00000017370 3 2 2 80 X 62840408 62848346 ATTTGAAGGCCCTTTCAAGTG 60 62840348 62840366 GAGTGGTCTTGTAATGGCG 59 NA Rattus norvegicus 81 Nusap1 ENSRNOG00000004921 ENSRNOT00000081934 1 1 2 86 3 111447185 111450088 ACACAAAGGAAAGCTGAAACC 60 111450136 111450154 TTCCTGTGCAGGGTAACTC 59 NA Rattus norvegicus 81 Ubtf ENSRNOG00000020937 ENSRNOT00000048418 1 1 2 109 10 90257528 90257546 GAATGCCAAGAAGTCGGAC 59 90256636 90257455 CACGCATAATCTCATCCGG 59 NA Rattus norvegicus 81 Spop ENSRNOG00000004686 ENSRNOT00000077625,ENSRNOT00000006230 2 2 2 80 10 83290706 83293636 CTGAAATGGTGTTTGCGAG 58 83293680 83293698 GACCAACAACAGGTAGAGC 58 NA Rattus norvegicus 81 Haus8 ENSRNOG00000052038 ENSRNOT00000090775,ENSRNOT00000078714 3 2 2 85 16 19663400 19667057 AAAGTACAAGGAGGAAGAGTGG 60 19661145 19661163 TCTCCTTTGGCTGCTACAG 59 NA Rattus norvegicus 81 Aox4 ENSRNOG00000014555 ENSRNOT00000083902 2 1 3 80 9 65123351 65123369 GAAATTTGTGCCGATGCAC 59 65123410 65127710 TGTACAGTTTAGTACACATCGG 58 NA Rattus norvegicus 81 LOC501406 ENSRNOG00000046353 ENSRNOT00000071758 1 1 2 80 1 38583544 38583565 GAAACCCTACAAATGTGAAGAG 57 38583401 38583503 CCAGTGTGAATTCTCTGGT 57 NA Rattus norvegicus 81 Nol6 ENSRNOG00000010409 ENSRNOT00000076185,ENSRNOT00000014211 2 2 3 81 5 57447663 57448321 GTTGACTGCTGAGGAACAG 59 57447600 57447619 GGTAACGATGACCATGACTG 59 NA Rattus norvegicus 81 Higd1b ENSRNOG00000002814 ENSRNOT00000003765 3 1 1 69 10 90930297 90930315 TAAGGAAGACCAGGGAGTC 58 90930893 90930911 CTGTACGCTGCTATCACCA 60 NA DesignNoJunction Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000075011,ENSRNOT00000076497,ENSRNOT00000018185 2 3 5 69 7 120764561 120764579 GTTGATGCAGCTTGTGGAC 60 120762935 120762953 AGTAGTCCGGTATCGTGAG 58 NA DesignNoJunction Rattus norvegicus 81 Peli3 ENSRNOG00000019950 ENSRNOT00000079984,ENSRNOT00000027038 3 2 2 107 1 220199678 220202709 GTTCTGGGCTACAATGGGT 60 220199589 220199608 CATGACATCTGGCTTCACTC 59 NA Rattus norvegicus 81 Wdfy2 ENSRNOG00000010042 ENSRNOT00000066864,ENSRNOT00000080537 1 2 2 80 15 46116200 46116219 TCACTCTGTCATCATGTGGG 60 46116261 46121906 GCCTGGACTTTGTCATTGTG 60 NA Rattus norvegicus 81 Scaf8 ENSRNOG00000016919 ENSRNOT00000083425 3 1 2 87 1 44065877 44067245 TCACCAGGAAGTTGATGGA 58 44067293 44067314 AGTTGAGGAGTAGGAATTTCCT 59 NA Rattus norvegicus 81 Loxl2 ENSRNOG00000016758 ENSRNOT00000085237 3 1 2 81 15 51304028 51304047 TGTTGGAGGCTATTAGTCCT 58 51315374 51315394 CAGTAGATGTTGTCCAACCA 58 NA Rattus norvegicus 81 Hecw1 ENSRNOG00000016046 ENSRNOT00000082040 2 1 2 80 17 53328454 53389474 CCTGTGTAGTGTGAAGAATCTG 59 53389512 53389533 CTCTGGGAGTTTCTAGATGGAG 60 NA Rattus norvegicus 81 Hecw1 ENSRNOG00000016046 ENSRNOT00000021703 2 1 2 80 17 53563992 53747697 CTCGAATGGTTTAGATTCAGC 57 53747739 53747757 TCTGGTGAAGAAAGCATCC 58 NA Rattus norvegicus 81 Tsga10ip ENSRNOG00000027564 ENSRNOT00000038198 2 1 2 80 1 220783722 220783741 AGGAAAGTTTCTTGACTGCC 58 220782905 220783680 CTGTAGTACTCACATGCCTG 58 NA Rattus norvegicus 81 Dmd ENSRNOG00000046366 ENSRNOT00000034372 2 1 4 80 X 53505022 53516730 TTCAAGAGGACACAATGTAGGA 59 53516768 53516789 ATGACTGAAACTAAGGACTCCA 59 NA Rattus norvegicus 81 Dmd ENSRNOG00000046366 ENSRNOT00000034372,ENSRNOT00000081061 3 2 4 96 X 53462442 53462462 GCATTGAGCATTATGCTAGCA 60 53463555 53466225 TCATCATCTATGCTCTCATTAGGAG 60 NA Rattus norvegicus 81 Plekha6 ENSRNOG00000002907 ENSRNOT00000076153 2 1 3 169 13 50559944 50559962 TGTTTCCAGTGCAATGTGC 60 50559141 50559159 TGTAGCTTCACAGCATTGG 58 NA DesignNoJunction Rattus norvegicus 81 Cacna1g ENSRNOG00000060528 ENSRNOT00000081307,ENSRNOT00000092024 3 2 2 80 10 82185690 82185873 CCATCTTCCAGGTCATCAC 58 82185628 82185648 TGAAGTTGTAGAAGGAGTGAG 57 NA Rattus norvegicus 81 Cd244 ENSRNOG00000004698 ENSRNOT00000006266 2 1 2 82 13 89994541 89995431 ACCGTGTATGAAGAGATTGGA 59 89995475 89995493 TCGAAGTTCTCCAGCTCTC 59 NA Rattus norvegicus 81 Adam15 ENSRNOG00000020590 ENSRNOT00000027970,ENSRNOT00000050868 1 2 2 80 2 188666798 188666816 TCACCTGGGAACAGTTGTC 60 188666631 188666755 TGGTAGGAAATCTGTGGAGG 59 NA Rattus norvegicus 81 Zfp9 ENSRNOG00000006726 ENSRNOT00000065579,ENSRNOT00000079053,ENSRNOT00000009095 3 3 3 136 4 150519571 150520279 AGGAGCTGTGGTGATAAGC 60 150518939 150518958 CAGTCATAGCTTTCATGCCG 60 NA Rattus norvegicus 81 Ift88 ENSRNOG00000009278 ENSRNOT00000076839,ENSRNOT00000012988 3 2 2 81 15 37720363 37725217 GAACGTGAAAGGAAAGCCA 59 37725262 37725280 CAAAGGAGGCTTCGATCAC 59 NA Rattus norvegicus 81 LOC100909555 ENSRNOG00000047746 ENSRNOT00000074325 1 1 1 113 1 11965244 11965262 GGCGGACTTCTTATTTGGG 59 11968501 11968519 AACCAGACAAATCGCTCCA 60 NA DesignNoJunction Rattus norvegicus 81 Ccdc150 ENSRNOG00000013318 ENSRNOT00000017859 2 1 2 89 9 60921450 60921469 AAGACTACGAGGTGAACTGG 59 60921515 60922004 GATTTATTAACCTCCCTCTGAAACC 60 NA Rattus norvegicus 81 Dct ENSRNOG00000008671 ENSRNOT00000011571 2 1 2 80 15 103213988 103214009 CAACTTGGCTACAATTATGCCA 60 103208377 103208399 GATTCCAATCACTGAGAGGGT 60 NA Rattus norvegicus 81 Abcf2 ENSRNOG00000010609 ENSRNOT00000088399,ENSRNOT00000014718 2 2 3 80 4 7134340 7134359 ATGCCATCAATGAGTTCGAG 59 7134402 7134963 AAATCTCCTGTGCAACCTG 58 NA Rattus norvegicus 81 Susd2 ENSRNOG00000033389 ENSRNOT00000079996,ENSRNOT00000066773 2 2 3 80 20 13966651 13966871 TCATTTGCAGGTTTAAGGAGAG 59 13966911 13966930 GCAAGGGTGATATACAGTGC 59 NA Rattus norvegicus 81 Ralgds ENSRNOG00000010219 ENSRNOT00000013809,ENSRNOT00000084092 1 2 2 80 3 7124790 7125260 CCATGAAGGACTATCTATATGGGAG 60 7125566 7125584 ACTTGATCTGGGCGATGAC 60 NA Rattus norvegicus 81 Tnfrsf10b ENSRNOG00000038483 ENSRNOT00000066128 3 1 2 109 15 51454618 51454638 CTCTAGGCTGTGAACAGGAC 60 51454710 51461139 AGTTCTGTCAGGTTCCGTG 60 NA Rattus norvegicus 81 Trim26 ENSRNOG00000032930 ENSRNOT00000079110,ENSRNOT00000085912,ENSRNOT00000001019 2 3 3 80 20 2205231 2205627 TATAAGACAGTAAGCGTCACC 57 2205171 2205189 GGTAATGCACTTCCAGTCC 58 NA Rattus norvegicus 81 Fam49b ENSRNOG00000061246 ENSRNOT00000090784,ENSRNOT00000078116 1 2 2 114 7 104525176 104527565 ATTAATAACGTCCCGGCAG 58 104525080 104525098 TTGTTGCGTCACTTAAGGT 58 NA Rattus norvegicus 81 Fam49b ENSRNOG00000061246 ENSRNOT00000090784,ENSRNOT00000078116 2 2 2 115 7 104525176 104527565 ATTAATAACGTCCCGGCAG 58 104525079 104525097 GTTGTTGCGTCACTTAAGG 57 NA Rattus norvegicus 81 Fam49b ENSRNOG00000061246 ENSRNOT00000090784,ENSRNOT00000078116 1 2 2 114 7 104525511 104527565 ATTAATAACGTCCCGGCAG 58 104525415 104525433 TTGTTGCGTCACTTAAGGT 58 NA Rattus norvegicus 81 Pld1 ENSRNOG00000028156 ENSRNOT00000039296,ENSRNOT00000039308 1 2 3 104 2 113833145 113833163 CAGGACACAGAGACAGTCC 59 113833231 113845530 ATAACCCAGGACAAGCCTG 59 NA Rattus norvegicus 81 Armc7 ENSRNOG00000042691 ENSRNOT00000004843 2 1 1 67 10 104036719 104036737 AGTTCCAGGAGACTGAGAG 58 104036858 104036876 ATAAGCGAAGTTGGCAAGG 59 NA DesignNoJunction Rattus norvegicus 81 Rnf8 ENSRNOG00000047171 ENSRNOT00000065629 2 1 2 81 20 8304488 8304506 TAAGATGGTGGAACGCCTG 60 8304548 8309450 TAACAGTCTCTTTGCTCTTCGT 60 NA Rattus norvegicus 81 Bin3 ENSRNOG00000018023 ENSRNOT00000083508 3 1 3 169 15 51779925 51799357 CTGGATTCCATTTAAGATCGGG 59 51805159 51809692 CAGATTTGGACATGGCCAG 59 NA Rattus norvegicus 81 Tia1 ENSRNOG00000016813 ENSRNOT00000085787 2 1 2 82 4 118217828 118217847 CAGAAGCTCTCATCCTCCAG 60 118217892 118220902 ATTTCCTGCCGTCTGATCC 60 NA Rattus norvegicus 81 Sphkap ENSRNOG00000016388 ENSRNOT00000022281 2 1 2 81 9 89072891 89072969 GAGCATCCCTCATTTGATAAGG 59 89072831 89072849 CATTGCTAGAGGGATGGCT 59 NA Rattus norvegicus 81 Xpo6 ENSRNOG00000016722 ENSRNOT00000043433,ENSRNOT00000079044 1 2 3 90 1 197549471 197549489 AAACCTTCTACCTCCTGCA 58 197549110 197549417 ACATGAGACCTCTCATCGA 58 NA Rattus norvegicus 81 Acsl6 ENSRNOG00000026745 ENSRNOT00000030760 2 1 2 81 10 39690731 39692200 AATGGTGCAGTCTGTTGTC 58 39692245 39692263 CATGTCGTCTGAGAGGAGG 59 NA Rattus norvegicus 81 Msn ENSRNOG00000030118 ENSRNOT00000076181 2 1 3 80 X 65293277 65293776 ATCTTAAGGCCCTTACTTCAG 57 65293818 65293836 TCTCAGCATGGATCATGTC 57 NA Rattus norvegicus 81 RGD621098 ENSRNOG00000014668 ENSRNOT00000085891 1 1 2 164 19 37204579 37204600 GAAATATGCACAACCTACAGCA 59 37206280 37215173 CCACTGAATCTCAAAGATCATCC 59 NA Rattus norvegicus 81 Camk2b ENSRNOG00000052080 ENSRNOT00000067162 2 1 3 88 14 86218584 86219916 GGCATTAAGGAATCTTCCGAC 59 86217369 86217387 ACCAAGCTCAGGACATCAG 59 NA Rattus norvegicus 81 Parn ENSRNOG00000002912 ENSRNOT00000084447,ENSRNOT00000078421 1 2 4 99 10 1312750 1312768 ACGGATTACTGTGCAGACC 60 1309762 1312687 TATCTGAGGCACTTCCTGC 59 NA Rattus norvegicus 81 Avpr1a ENSRNOG00000004400 ENSRNOT00000087045 2 1 2 85 7 67341606 67341624 TCCAAAGTTTCCCATGCTG 58 67341537 67341560 GAATAAGAAGTCTCTTCGGCTC 59 NA Rattus norvegicus 81 Ube4a ENSRNOG00000026833 ENSRNOT00000021321 2 1 2 80 8 49258217 49264836 CTGAAACAGCAGTCTGATGAG 59 49258157 49258175 GTCAAACTCATCCAGGCTC 58 NA Rattus norvegicus 81 Capn3 ENSRNOG00000008609 ENSRNOT00000080533 1 1 4 80 3 112256826 112256849 GAGTGACATGTACAAGATCATGAG 59 112256885 112259839 ACCGGAACAATTGTATCAATGG 59 NA Rattus norvegicus 81 Lrrc56 ENSRNOG00000016697 ENSRNOT00000091150 1 1 2 80 1 214193392 214193486 TACAGAGCAGAGAAGCTGAG 59 214193529 214193547 CAGGAGAATGTCAAGCACG 59 NA Rattus norvegicus 81 Lrrc56 ENSRNOG00000016697 ENSRNOT00000091150 2 1 2 80 1 214193393 214193486 ACAGAGCAGAGAAGCTGAG 59 214193530 214193548 GCAGGAGAATGTCAAGCAC 59 NA Rattus norvegicus 81 Rhot1 ENSRNOG00000004093 ENSRNOT00000082685,ENSRNOT00000006218,ENSRNOT00000079696 3 3 4 82 10 67622363 67622381 TGTCTGGAGTATCTGGGCT 60 67622425 67624295 TCTCTTGTTACTGTGATGGCT 59 NA Rattus norvegicus 81 Clnk ENSRNOG00000051169 ENSRNOT00000076730 2 1 2 80 14 76793199 76796205 TTCAGTAAGGTCCTTGAAGC 58 76799238 76799256 GTTTAGGCTTGGTGATGGG 59 NA Rattus norvegicus 81 Clnk ENSRNOG00000051169 ENSRNOT00000076730 3 1 2 80 14 76793199 76796206 TTCAGTAAGGTCCTTGAAGCA 59 76799238 76799256 GTTTAGGCTTGGTGATGGG 59 NA Rattus norvegicus 81 Tubb4b ENSRNOG00000010170 ENSRNOT00000013863 2 1 1 80 3 2443629 2443649 TCTTCAGACCTGATAACTTCG 57 2443049 2443067 CTGCACCTTCTGTGTAGTG 58 NA DesignNoJunction Rattus norvegicus 81 Dyrk3 ENSRNOG00000004870 ENSRNOT00000006502,ENSRNOT00000087793 3 2 2 83 13 47908018 47914853 GAAGGCTAAATATTACCACTGAGC 60 47907958 47907976 GTTGCTCCACCTTCATCAC 59 NA Rattus norvegicus 81 Ano4 ENSRNOG00000006841 ENSRNOT00000089269 2 1 2 81 7 29562228 29563273 CAAGTCAGTAAAGAAGTCTGC 57 29562167 29562186 ATAGCCTCATGAATGGACAG 57 NA Rattus norvegicus 81 Krt86 ENSRNOG00000008367 ENSRNOT00000082542,ENSRNOT00000081386 2 2 4 81 7 143124234 143124988 CTGAAGAAGGATGTGGACTG 58 143125032 143125050 AGTCGATCTCTTGGGTCAG 59 NA Rattus norvegicus 81 Slco1a4 ENSRNOG00000047493 ENSRNOT00000046598,ENSRNOT00000043374 2 2 2 80 4 176007114 176007132 ATTGGTGTTGGATGTGCAG 59 176002976 176007073 ATATTCATATTGGCCCATGAGG 58 NA Rattus norvegicus 81 Fyttd1 ENSRNOG00000034233 ENSRNOT00000080568,ENSRNOT00000042240 1 2 3 92 11 71128128 71128146 TCGTCCACCTCTAAGTGAC 59 71117930 71120909 TTCTGAGTTTGACGTGTTCTC 59 NA Rattus norvegicus 81 Syne2 ENSRNOG00000005323 ENSRNOT00000089905 1 1 11 80 6 99151168 99151187 AATCCAGACGCTTCTTTGAC 59 99151228 99151879 CTCTTCCTCTCCAAACTTTGC 59 NA Rattus norvegicus 81 Phldb1 ENSRNOG00000026985 ENSRNOT00000047303 3 1 3 80 8 49014495 49014516 TTGAGAGGAGATATCATTCGCT 59 49011754 49014457 GCAGTTTCTCCATCTCTTTGAG 59 NA Rattus norvegicus 81 Kcnt1 ENSRNOG00000017283 ENSRNOT00000023542 2 1 2 80 3 3330059 3336028 CTCTTCCCTTTCTCAGGTCC 60 3336069 3336089 TTGATGAAGAACAGCTTGAGG 59 NA Rattus norvegicus 81 Cdk1 ENSRNOG00000000632 ENSRNOT00000000783,ENSRNOT00000086806,ENSRNOT00000081113 3 3 3 80 20 20582930 20583919 CATCCAAATATAGTCAGCCTGC 59 20583960 20583978 ATCCATGGACAGGAACTCG 59 NA Rattus norvegicus 81 Mxd4 ENSRNOG00000015033 ENSRNOT00000018515 1 1 2 120 14 81819600 81819618 AGGATGGAGCTGAACTCTC 59 81819783 81828335 CTGAGTTTAGCTCGTCGTC 58 NA Rattus norvegicus 81 Psg19 ENSRNOG00000038101 ENSRNOT00000058000 3 1 5 81 1 79704027 79704045 TTCTACACCCTACGCACTC 59 79702874 79703982 AGGAAAGGGAGGTGTTCAC 59 NA Rattus norvegicus 81 Unc5cl ENSRNOG00000046601 ENSRNOT00000078464 2 1 2 80 9 14499176 14499196 CAATGGGAATGAAGAGTGCTC 59 14498306 14499134 TTGGTTTCCAAGCCATCCT 60 NA Rattus norvegicus 81 Pfkm ENSRNOG00000057988 ENSRNOT00000088376,ENSRNOT00000078579 3 2 2 80 7 139716026 139716044 ACCTGGAACAGATCAGTGC 60 139716088 139716201 CTGTGTAAGCCTCAAAGCC 59 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245 2 2 6 86 14 44526913 44527306 TTCAAATTCAGCGGCTCTG 59 44527354 44527374 TCAGAAACATAGATGCCATCC 58 NA Rattus norvegicus 81 Cmip ENSRNOG00000013178 ENSRNOT00000017941,ENSRNOT00000083991 3 2 2 80 19 49993214 49994008 AGACCATGGCAGAGATACTG 59 49994050 49994069 TGGAGATGATCTGTAGCTGG 59 NA Rattus norvegicus 81 Elf1 ENSRNOG00000011762 ENSRNOT00000079417 2 1 3 111 15 61847330 61856478 CGACATCACCCTTACAGGA 59 61856553 61857677 AATTGTGTTTCCCTTCCCG 58 NA Rattus norvegicus 81 Elf1 ENSRNOG00000011762 ENSRNOT00000068269 3 1 3 85 15 61847331 61852605 GACATCACCCTTACAGTCGA 59 61852653 61852671 ATATTGAGGAGCGCCTCAG 59 NA Rattus norvegicus 81 Nr1d2 ENSRNOG00000046912 ENSRNOT00000071751 3 1 2 111 15 8746094 8746112 ATGAGCAGTCAGTACCACC 59 8746188 8746208 CCAATCACTTCCCTTTGCA 58 NA Rattus norvegicus 81 Snx13 ENSRNOG00000004186 ENSRNOT00000084661 3 1 2 81 6 54549981 54550004 AGTTAGAAGCAGTCAGAGATAAGG 60 54550041 54550420 GTGTTAATATCATCACCGGCTG 60 NA Rattus norvegicus 81 Tg ENSRNOG00000006104 ENSRNOT00000009240,ENSRNOT00000077382 1 2 3 80 7 107514803 107514824 GTTCTCCTGTGATAGTCAAGTC 58 107514864 107516793 CATCATCTGCACAATCTGCT 59 NA Rattus norvegicus 81 Gtf3c3 ENSRNOG00000002091 ENSRNOT00000082681,ENSRNOT00000002864 3 2 2 80 9 61023974 61023993 AATATTCGCTTTGCTCGAGG 59 61022376 61023932 ATAAGCCAAAGGAGCTTGTC 58 NA Rattus norvegicus 81 Add2 ENSRNOG00000015903 ENSRNOT00000021491 3 1 2 102 4 117875119 117875138 TCACCTGTAAAGTCCACACC 60 117875203 117881973 TCTTGGCATCCTCTGAAGC 60 NA Rattus norvegicus 81 Zeb1 ENSRNOG00000017863 ENSRNOT00000024336,ENSRNOT00000046013 1 2 2 80 17 54670697 54670718 TTACACCTTTGCATACAGAACC 59 54668773 54670657 TGTGTCACATGTCTTTGCTC 59 NA Rattus norvegicus 81 Esr2 ENSRNOG00000005343 ENSRNOT00000041872,ENSRNOT00000007109 2 2 4 80 6 99203186 99203205 TGCATCTGGGTATCATTACG 58 99184558 99203143 CTCCTGGATCCTTGAATGC 58 NA Rattus norvegicus 81 Krt7 ENSRNOG00000008057 ENSRNOT00000010660,ENSRNOT00000087481 1 2 3 82 7 143068230 143068984 CAGACCAAGTTCGAGACAC 58 143069030 143069048 ATCTCCGCAATCTCATTCC 57 NA Rattus norvegicus 81 Lrch3 ENSRNOG00000001774 ENSRNOT00000063883 1 1 3 86 11 71035930 71038449 CACAATCAGCACAAAGTATCAC 58 71034138 71034156 CTGAGACCTTCTGGATGGG 59 NA Rattus norvegicus 81 Slc25a3 ENSRNOG00000008289 ENSRNOT00000011494 2 1 2 83 7 31822066 31823608 CGTGGAAGAGTACAGTTGTG 59 31822002 31822021 GTCAGCCCACAACTTAAGAC 59 NA Rattus norvegicus 81 Oprl1 ENSRNOG00000016768 ENSRNOT00000045845 2 1 2 83 3 177226655 177229045 TATGTCATCCTCAGGCACAC 60 177229091 177229109 CAAGACCAGGGTATCAGCC 60 NA Rattus norvegicus 81 Oprl1 ENSRNOG00000016768 ENSRNOT00000031328 2 1 2 119 3 177226655 177227228 TATGTCATCCTCAGCTGGG 59 177229093 177229111 AGCAAGACCAGGGTATCAG 59 NA Rattus norvegicus 81 Dhx34 ENSRNOG00000047575 ENSRNOT00000089718,ENSRNOT00000075327 1 2 2 80 1 78105722 78105740 CTGTCCACCAACATTGCAG 60 78104384 78105679 CATCTCCTTCACCTTCCCAG 60 NA Rattus norvegicus 81 Phc3 ENSRNOG00000009491 ENSRNOT00000066495 2 1 2 90 2 116065636 116065656 CCATTTCAGACTCTTCCTCCT 59 116065707 116070163 CCTGATAAACCACTGGTGGA 60 NA Rattus norvegicus 81 Phc3 ENSRNOG00000009491 ENSRNOT00000089477 2 1 2 80 2 116053579 116053598 CTGTACAGTCTGACATCCCT 59 116053638 116059664 TTAAATTCTGAACCTGAGCAGC 59 NA Rattus norvegicus 81 Cadm3 ENSRNOG00000003365 ENSRNOT00000004613 1 1 2 84 13 91852605 91872885 TCTTTCCCAGGACGATAGC 59 91852539 91852557 TTTCACTTGGCACTTGAGC 59 NA Rattus norvegicus 81 Ptcd3 ENSRNOG00000009484 ENSRNOT00000078991,ENSRNOT00000012622 2 2 3 80 4 99810292 99810312 GAATCTTTGCTCTGATGCCAG 60 99809463 99810250 CATAAGCTCGGTGCTTCAC 59 NA Rattus norvegicus 81 Vom2r62 ENSRNOG00000050572 ENSRNOT00000037646 3 1 4 80 12 19763041 19778838 CAGTTTACGGATTACGCCAC 59 19762980 19763002 ATAGGGTTTCTGTTGATCTCCTC 60 NA Rattus norvegicus 81 Amotl2 ENSRNOG00000008487 ENSRNOT00000090221,ENSRNOT00000011347 3 2 2 103 8 111213731 111213749 TACCCACACGCTGTAATGG 60 111213816 111216609 TGCAGGATCCTGACTTCAG 59 NA Rattus norvegicus 81 LOC680907 ENSRNOG00000036647 ENSRNOT00000025680 1 1 2 80 1 212715879 212804570 TTGTATGCACAGGTCACGT 60 212804614 212804632 GTCCTCGAAGAACCTCCAG 60 NA Rattus norvegicus 81 LOC100911865 ENSRNOG00000036598 ENSRNOT00000078738,ENSRNOT00000091663,ENSRNOT00000072002,ENSRNOT00000073502,ENSRNOT00000018668 2 5 5 84 1 257590076 257746041 CATCTTTCAGAAGGGTGGC 59 257746089 257746107 GTAACCAACGTCAGGTCTG 58 NA Rattus norvegicus 81 Papss2 ENSRNOG00000011068 ENSRNOT00000014979 2 1 2 80 1 251203321 251203340 CTCAAAGGCTTTATGAGGGA 57 251203382 251213379 CATGTTGATGACTCCATCGT 58 NA Rattus norvegicus 81 Cr2 ENSRNOG00000034164 ENSRNOT00000010910 2 1 2 82 13 113915557 113927697 GGAGTTCTTGAGCTTTCTTGTG 60 113915496 113915514 CCAGGAAGTACGGGAAGAG 59 NA Rattus norvegicus 81 Naa60 ENSRNOG00000007280 ENSRNOT00000009936,ENSRNOT00000075238 2 2 2 80 10 11886381 11886402 TACACAAGTTGCATACATCCTC 59 11885670 11886346 CTTTCTAATAAGAGGGAACCTATGC 59 NA Rattus norvegicus 81 Krt72 ENSRNOG00000030876 ENSRNOT00000038105,ENSRNOT00000086504 1 2 2 80 7 143387077 143388134 CTGAAGAAGGATGTGGATGC 59 143387016 143387037 TTTGATGTCATCTGTCATGGAG 59 NA Rattus norvegicus 81 Krt72 ENSRNOG00000030876 ENSRNOT00000086504 2 1 2 95 7 143382701 143382722 AAAGCCTCCAGACAGACAG 59 143382624 143382642 CTTCCTGACTTGGGAAGGG 60 NA Rattus norvegicus 81 Slc13a2 ENSRNOG00000010337 ENSRNOT00000038690 2 1 2 81 10 65673458 65675863 CCTCTGAGGTCTGCATAGAG 59 65673396 65673414 TGTTCTACAGCAATGGCCA 60 NA Rattus norvegicus 81 Il13ra2 ENSRNOG00000032973 ENSRNOT00000084465,ENSRNOT00000043338 2 2 2 80 X 118449307 118450626 GAAGATGATATTTCTTGGGAGTCTG 60 118449251 118449272 CAGGTCTTCACTTTCATTTGCT 60 NA Rattus norvegicus 81 Slc12a8 ENSRNOG00000001792 ENSRNOT00000002439 1 1 3 84 11 70401431 70401449 CAACATGGGAGGAGACCTG 60 70399521 70401386 GTAGAGAAACCACGAGATACCA 59 NA Rattus norvegicus 81 Slc12a8 ENSRNOG00000001792 ENSRNOT00000002439 2 1 3 84 11 70401433 70401451 TTCAACATGGGAGGAGACC 59 70399523 70401386 AGAGAAACCACGAGATACCA 58 NA Rattus norvegicus 81 Vps26a ENSRNOG00000030683 ENSRNOT00000067883 1 1 2 84 20 32087043 32090263 AGCAGCAGGAGATTATCCT 58 32086977 32086995 GGAGATTCAAATCGCTGGT 58 NA Rattus norvegicus 81 Krt73 ENSRNOG00000025087 ENSRNOT00000091540,ENSRNOT00000013122 3 2 2 80 7 143402864 143404909 CCAGACCAAGTTCCAAGAG 58 143402802 143402820 TCAGAGATCTCGTTCCTGG 58 NA Rattus norvegicus 81 Gtf2ird2 ENSRNOG00000001482 ENSRNOT00000075846,ENSRNOT00000002030 1 2 3 80 12 25514972 25516908 GTGACAGTCCCAGATAATGAG 58 25514912 25514931 GAGGTCGTTCACTTGTTCTC 59 NA Rattus norvegicus 81 Clasrp ENSRNOG00000046000 ENSRNOT00000081565,ENSRNOT00000075144 1 2 2 80 1 80505930 80506393 CTGTGAACATGATGCCCTG 59 80505868 80505887 GGATGTGGTCTAGATGTGCA 60 NA Rattus norvegicus 81 Vom2r42 ENSRNOG00000043159 ENSRNOT00000089015 3 1 3 80 1 148928187 149079749 TCCTAGGATTCTCCATTGCC 59 148928126 148928145 TGGCTTCATTGAATGTGTCG 59 NA Rattus norvegicus 81 Naa35 ENSRNOG00000018417 ENSRNOT00000025096,ENSRNOT00000090032 2 2 2 110 17 5436598 5436617 GTGAAGTCGTGAACTTACCA 58 5429959 5432556 CGAGGAAAGTAGTTTGTAACAG 57 NA Rattus norvegicus 81 Tmem180 ENSRNOG00000019674 ENSRNOT00000088243 3 1 2 95 1 266117046 266117067 ACTTCAACAGTAACTTCTTCCC 58 266117123 266119105 CATAGGAGATGCCCAACAG 58 NA Rattus norvegicus 81 Fxyd6 ENSRNOG00000016412 ENSRNOT00000082205 3 1 2 81 8 49698668 49698688 GCAGTTTCAATCAGAAACCCA 60 49699379 49702193 CTTCTGGAGGCATTTGTGG 59 NA Rattus norvegicus 81 Acsm1 ENSRNOG00000042084 ENSRNOT00000084260,ENSRNOT00000055083 2 2 4 80 1 189393395 189393416 CAGCTTATCAAAGAGCTACAGG 59 189393457 189394993 TGAAACAAACTCCACCTTCC 58 NA Rattus norvegicus 81 Urgcp ENSRNOG00000012184 ENSRNOT00000076740 3 1 3 84 14 85967805 85968312 GGTCAAAGGGCATTCAGAC 59 85965411 85967758 CAAATCTGCAATTGCCACAG 59 NA Rattus norvegicus 81 Fgr ENSRNOG00000009912 ENSRNOT00000013778,ENSRNOT00000085674 2 2 2 80 5 151185783 151185801 GACTATGAGGCCAGGACAG 59 151185842 151187065 GTCATACTCCGTATTGTTCAGG 59 NA Rattus norvegicus 81 RGD1304704 ENSRNOG00000000340 ENSRNOT00000092002 2 1 2 82 15 4883229 4883968 GCAGCAGGATGAAACAGAG 59 4884009 4884032 CTCTGTCTTCAATCTTGTAGTGTC 59 NA Rattus norvegicus 81 Map1a ENSRNOG00000014230 ENSRNOT00000083005,ENSRNOT00000019320 3 2 2 81 3 113269952 113270155 GGAGAACCTTCAGGTGACTC 60 113270199 113270217 CTGCTGTTCATGTGTCTGC 60 NA Rattus norvegicus 81 Tefm ENSRNOG00000004000 ENSRNOT00000090278,ENSRNOT00000005325 3 2 2 84 10 67476597 67477098 CTGGAAGAGATTTCTTCAGTCG 59 67476534 67476554 TGTTCTGAATGGAAAGTCCTG 58 NA Rattus norvegicus 81 Steap4 ENSRNOG00000008602 ENSRNOT00000011432 2 1 3 80 4 23115820 23115838 TTGGGAATCACTTCCTTGC 58 23114476 23115777 ATAACCCAGTTTGGACTGGA 59 NA Rattus norvegicus 81 RGD1306063 ENSRNOG00000039871 ENSRNOT00000084687,ENSRNOT00000061214 1 2 2 80 15 12885956 12885974 ATCAAAGCACAGAAAGGGC 59 12876883 12885913 CATCTATGTCCTGCAAGAGC 59 NA Rattus norvegicus 81 Akap11 ENSRNOG00000009987 ENSRNOT00000058148,ENSRNOT00000079978 3 2 3 80 15 60750288 60750306 GAGCTGTGCAGTGTATCAG 58 60748352 60750246 AAAGCCCAGAAATGTGATCTC 59 NA Rattus norvegicus 81 Pitrm1 ENSRNOG00000016511 ENSRNOT00000086236 1 1 2 80 17 68487219 68487238 CCCAGATTCACTAGCTACAG 57 68487280 68488845 AAGGTGTTGGTGATATCTGG 57 NA Rattus norvegicus 81 Spire1 ENSRNOG00000025324 ENSRNOT00000066103 1 1 2 154 18 63357121 63357139 GAGCTTGGAAGAGATCCTG 57 63294480 63357003 ATTCGATAACGCGGATCTG 58 NA Rattus norvegicus 81 Flcn ENSRNOG00000003302 ENSRNOT00000091052 3 1 2 81 10 46155481 46155499 ACCAACCAGAACCTGTCTG 60 46154815 46155438 ATGTCAGCAAACTCTTCATCC 59 NA Rattus norvegicus 81 Tnfrsf8 ENSRNOG00000016782 ENSRNOT00000085929 3 1 2 80 5 163214865 163214889 CTGACTACTACAAACGAAGACAG 59 163212955 163212973 AGAACATGGAGCCTTCTCC 59 NA Rattus norvegicus 81 Spen ENSRNOG00000033556 ENSRNOT00000055791,ENSRNOT00000067517 3 2 2 80 5 160017220 160017474 GAGGATGACAGTGGAAACAG 58 160017159 160017177 GTCTGGCTTACGACATCCT 59 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000075878,ENSRNOT00000061687,ENSRNOT00000076573,ENSRNOT00000091249,ENSRNOT00000077219,ENSRNOT00000077505,ENSRNOT00000008319 1 7 9 80 4 14166253 14166274 ATCCATTCTTGAGTTTGGTTCC 59 14166309 14169640 CTCCATCTACAGTGTTATTGTAAGG 59 NA Rattus norvegicus 81 Nf1 ENSRNOG00000013780 ENSRNOT00000046262 3 1 2 83 10 66802710 66812216 TTGTACCAGGTGGTTAGCC 59 66812263 66812281 AGGGTTGATGAACCTCAGG 59 NA Rattus norvegicus 81 Gnpnat1 ENSRNOG00000008641 ENSRNOT00000012036,ENSRNOT00000078850 3 2 2 68 15 19727789 19727807 TTGACAGAGACTGGTGTCG 59 19726180 19726200 CCCAGACTTCTTCATATGCTC 58 NA DesignNoJunction Rattus norvegicus 81 Dlg1 ENSRNOG00000038597 ENSRNOT00000078737,ENSRNOT00000058885 2 2 2 80 11 72314288 72314306 GGAGAAGAGCCTGTCAGAG 59 72274511 72314244 GCTTCTGTGGGCTTTATGG 59 NA Rattus norvegicus 81 Mrpl1 ENSRNOG00000002070 ENSRNOT00000084617,ENSRNOT00000002834 1 2 2 80 14 14986672 14987806 TGTTTACAGGGAATGCATCAG 59 14986612 14986633 TCTTAACTAGATCTGCTCCTCC 59 NA Rattus norvegicus 81 Mrpl1 ENSRNOG00000002070 ENSRNOT00000002834 1 1 2 81 14 14951693 14953678 GAATCTGGGTCCATTTGTGC 60 14951631 14951649 GGGTAAGAGCGAGTCAGTC 60 NA Rattus norvegicus 81 Btbd10 ENSRNOG00000014341 ENSRNOT00000067170,ENSRNOT00000081767 2 2 2 80 1 178139641 178145861 TAGATTGGGAATAGAAGGCTACC 59 178139583 178139603 TTGTAAATGACTTCTGGACGG 58 NA Rattus norvegicus 81 Btbd10 ENSRNOG00000014341 ENSRNOT00000067170,ENSRNOT00000081767 3 2 2 80 1 178139641 178145860 AGATTGGGAATAGAAGGCTACC 60 178139582 178139603 GTTGTAAATGACTTCTGGACGG 60 NA Rattus norvegicus 81 Pdgfa ENSRNOG00000001312 ENSRNOT00000042117,ENSRNOT00000001775 1 2 3 82 12 17753014 17753032 GTTAGAGGAGCACCTGGAG 59 17753078 17755006 CTCACCTCACATCCGTCTC 60 NA Rattus norvegicus 81 Serinc4 ENSRNOG00000015499 ENSRNOT00000021008,ENSRNOT00000089433 3 2 3 81 3 113420080 113420205 CCAGAGACAATAATCTTTCAAGGAC 60 113420023 113420042 CATCCGGTATTTGTGGTTCC 59 NA Rattus norvegicus 81 Grin1 ENSRNOG00000011726 ENSRNOT00000037725,ENSRNOT00000049297,ENSRNOT00000044246 3 3 3 80 3 2515012 2519288 GACTAAAGATAGTGACAATCCACC 59 2514955 2514973 ACTCCTCTTTGCATGTCCC 60 NA Rattus norvegicus 81 Atp5c1 ENSRNOG00000019223 ENSRNOT00000025993,ENSRNOT00000090453 2 2 4 82 17 72247454 72356850 CTCAAGAAGAGGAGGAAGAGG 59 72356894 72356912 ATCTTCTTCCAAGGGCACC 60 NA Rattus norvegicus 81 Cenpi ENSRNOG00000033335 ENSRNOT00000046288 2 1 2 85 X 105188512 105188661 TTGTACAGAAGGCAAAGTCAG 59 105188708 105188726 GCAATGAACCAGAGCTGTC 59 NA Rattus norvegicus 81 Cdv3 ENSRNOG00000010186 ENSRNOT00000044956 2 1 2 81 8 111840531 111840552 ACCACCAGAAATATACAGTGAC 58 111840131 111840489 TAAGTACCTGTTCCGGCTC 59 NA Rattus norvegicus 81 RT1-T18 ENSRNOG00000030666 ENSRNOT00000088029,ENSRNOT00000080406 1 2 4 82 20 3113956 3113974 CTACTTAGAGGGCCCATGC 60 3114019 3121527 TTGGAGGATCTGTACACTGC 60 NA Rattus norvegicus 81 Prr36 ENSRNOG00000028892 ENSRNOT00000068586,ENSRNOT00000043197 3 2 2 68 12 2580353 2580372 TTCTATTTCTAGCCCAGGGC 59 2581102 2581120 AGTCCCTTCTGGACAACAG 59 NA DesignNoJunction Rattus norvegicus 81 Zfp142 ENSRNOG00000022414 ENSRNOT00000067080,ENSRNOT00000084964 3 2 2 80 9 81852156 81854181 TGTTGCTTCATACTGGAGAG 57 81852095 81852114 GCTTGGATAGGTAGCTAACG 58 NA Rattus norvegicus 81 Tmem255a ENSRNOG00000028085 ENSRNOT00000077697,ENSRNOT00000036472 3 2 2 80 X 124412946 124412965 AAGTGGCATCGTACAATACC 58 124403023 124412903 CTCCGGAATGCTGAAAGTC 59 NA Rattus norvegicus 81 Tac1 ENSRNOG00000007374 ENSRNOT00000009888,ENSRNOT00000052333 2 2 3 80 4 33640464 33640482 CTTCTTCAGAGAATCGCCC 58 33640525 33640982 AATTGAGGAATCAGCATCCC 58 NA Rattus norvegicus 81 Rpl34 ENSRNOG00000016387 ENSRNOT00000009046,ENSRNOT00000005772 3 2 2 82 2 235852556 235852652 AACTAGGCTGTCTCGAACC 59 235852492 235852510 CACATGCGGATTTAGGTGC 60 NA Rattus norvegicus 81 Tfcp2 ENSRNOG00000032395 ENSRNOT00000087632 2 1 2 100 7 142146930 142147304 GTACTTTCTTTGTGTACCATGC 58 142146851 142146872 GATCTGCTGAGGAGAAATACTG 59 NA Rattus norvegicus 81 Ikzf1 ENSRNOG00000004444 ENSRNOT00000080753 3 1 2 114 14 91845578 91850871 AGTCATACTGGTGAACGGC 60 91850949 91850967 GGCATTTGAAGGGCTTCTC 59 NA Rattus norvegicus 81 Napepld ENSRNOG00000011363 ENSRNOT00000015322 2 1 2 80 4 9997025 9997043 TCACATTGACGTTCAAGCC 59 9997083 10002126 GGCTCTAAGTAATGCTCATTAGC 60 NA Rattus norvegicus 81 Tmem184a ENSRNOG00000001275 ENSRNOT00000085936,ENSRNOT00000001718 1 2 2 80 12 16918363 16918487 GGCAAACCTATCAGGTCCA 59 16918528 16918549 GAAGCGTAAGAAAGTGATGGAG 60 NA Rattus norvegicus 81 Flvcr2 ENSRNOG00000008754 ENSRNOT00000089972 1 1 4 85 6 109673454 109673968 GCGATAGTATTCATCACTACAGC 59 109674112 109674130 GTATGTGAGCTCCACAGCA 60 NA Rattus norvegicus 81 Atf2 ENSRNOG00000001597 ENSRNOT00000002174 1 1 2 80 3 60748461 60748480 AACAAGCAGTACCTTCACCA 60 60747731 60748419 CTGGTACAGGAACAATTGGC 59 NA Rattus norvegicus 81 Rsph9 ENSRNOG00000019474 ENSRNOT00000068747,ENSRNOT00000080816 3 2 2 87 9 17227410 17227430 CCTTCACACGAGTATGAACAC 59 17227479 17231875 CCTTGATTTGGACCACCAC 59 NA Rattus norvegicus 81 Gp2 ENSRNOG00000015716 ENSRNOT00000092022,ENSRNOT00000021249 3 2 2 80 1 189176354 189176856 CAATGTTTCTGACCCTCAGAG 59 189176294 189176313 AAACACTTGTCCAGCTTCAC 59 NA Rattus norvegicus 81 Ctla4 ENSRNOG00000054129 ENSRNOT00000091237,ENSRNOT00000088183 3 2 2 80 9 67699613 67702707 CTTCTCTGAAGCCATACAAGTG 59 67702747 67702766 TATTCACATGGAAAGCTGGC 59 NA Rattus norvegicus 81 Ext2 ENSRNOG00000008944 ENSRNOT00000083743 2 1 2 86 3 82614559 82637788 GTTTGGTTATGAGGTCTGGC 59 82614492 82614510 TTGTTCATCTCGTGGTCCC 60 NA Rattus norvegicus 81 Rexo2 ENSRNOG00000018939 ENSRNOT00000087265,ENSRNOT00000047633 3 2 2 80 8 52808666 52808687 GATTATCAAACAGCCGGATGAG 60 52807983 52808626 TTGGTAAGACCAGACTTCCC 59 NA Rattus norvegicus 81 Rexo2 ENSRNOG00000018939 ENSRNOT00000087265 2 1 2 114 8 52803018 52803036 GCGAAAGCATCAAAGAGCT 59 52802792 52802941 TGCAAAGTTAAGGGCTTCTC 59 NA Rattus norvegicus 81 Vipas39 ENSRNOG00000049223 ENSRNOT00000073428 3 1 2 86 6 111286933 111286951 GCCTAAGGGAGAGTACAGG 59 111283007 111284760 AAGATCAGAACCTTGCCCT 59 NA Rattus norvegicus 81 Exoc3 ENSRNOG00000039776 ENSRNOT00000020251,ENSRNOT00000077740 2 2 2 80 1 31723807 31723827 TCTAGATGCCATTGCTAAGGA 59 31723868 31725710 AGCTCATTCAGATGTTGCTC 58 NA Rattus norvegicus 81 Cyb5b ENSRNOG00000011142 ENSRNOT00000086435,ENSRNOT00000015006 3 2 2 80 19 39386430 39389317 AATTCATGCCAAAGTTCCTGG 60 39389357 39389377 GAAGTGACGATACAGGAAACC 59 NA Rattus norvegicus 81 Vprbp ENSRNOG00000013841 ENSRNOT00000079801 3 1 2 81 8 115589684 115589703 TGTGCAGGCTTTATGAAGTG 59 115589746 115609076 TCCTGTTCTTCCTCTTCCTG 59 NA Rattus norvegicus 81 LOC100911293 ENSRNOG00000027295 ENSRNOT00000024207,ENSRNOT00000057704,ENSRNOT00000024176 3 3 3 80 8 72615740 72615763 AGAAGAATAAGTGGTACATCCTCC 60 72608739 72615705 AGTGAGGACTTAGTAAAGTCTGG 59 NA Rattus norvegicus 81 Gria2 ENSRNOG00000054204 ENSRNOT00000077941 3 1 2 87 2 179591452 179591471 CTTGTGACACCATGAAAGTG 57 179590536 179591403 ACCGCATTTCTTAATGAGGA 57 NA Rattus norvegicus 81 Wbp1l ENSRNOG00000020020 ENSRNOT00000027118,ENSRNOT00000080509 3 2 2 119 1 266401977 266409952 TGAACTCTGGTGGTTCTGG 59 266410035 266410053 TTGATTTCATGTTGCCGCT 59 NA Rattus norvegicus 81 Slc1a3 ENSRNOG00000016163 ENSRNOT00000077790 2 1 4 80 2 57868680 57876550 GGATTTAATCAGGTATGCACCTC 59 57868622 57868644 ATCACACCCATATCTTCCATCTC 60 NA Rattus norvegicus 81 Slc1a3 ENSRNOG00000016163 ENSRNOT00000085599 2 1 4 80 2 57863102 57867742 TATAACAATAAGGGACCGCC 57 57863041 57863060 GACAAGTGTTCAACAATCCC 57 NA Rattus norvegicus 81 LOC362863 ENSRNOG00000026807 ENSRNOT00000031946 3 1 3 80 7 27289977 27289997 AAGTCTCCAAGTACGTGATGG 60 27290037 27292011 CAGAAGCCAACATGAGAACAC 60 NA Rattus norvegicus 81 St8sia5 ENSRNOG00000022691 ENSRNOT00000035317 1 1 2 82 18 73564369 73564387 TTCATCTTCATCTGCGCCT 60 73564430 73603595 TCGAAGTACCTCTTGATGTAGC 60 NA Rattus norvegicus 81 Tef ENSRNOG00000019383 ENSRNOT00000026258,ENSRNOT00000086355 1 2 2 80 7 123047238 123052959 GTCCAGCACAGAATCATCC 58 123053003 123053021 TTCACATCAACCTCCACAC 58 NA Rattus norvegicus 81 Sult2b1 ENSRNOG00000021046 ENSRNOT00000028570 2 1 2 80 1 101724668 101741339 CCGAACTTAGCCAGAAGCT 60 101724606 101724625 TCTCTGGTGTATACATGCCG 59 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000076583,ENSRNOT00000076950,ENSRNOT00000076633,ENSRNOT00000068276 3 4 8 87 4 8223895 8223914 GCAACATATTGACTGCATGG 58 8217602 8223845 TTTATCCAAACTCCTGGGC 57 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000076583,ENSRNOT00000076950,ENSRNOT00000076633,ENSRNOT00000068276 1 4 8 86 4 8223895 8223914 GCAACATATTGACTGCATGG 58 8217603 8223846 TTATCCAAACTCCTGGGCT 58 NA Rattus norvegicus 81 Cttn ENSRNOG00000050994 ENSRNOT00000047669,ENSRNOT00000028283 2 2 3 89 1 215273115 215273134 GAATTGACAAGGACAAGGTG 57 215272623 215273066 TTACATAGTCTTTCTGGGACTC 57 NA Rattus norvegicus 81 Phactr2 ENSRNOG00000015473 ENSRNOT00000088558 2 1 2 80 1 7367973 7371208 CTGGGCCAGATTAGTTTCAG 58 7364107 7364125 TGAACTTCCATTTCCGTGC 59 NA Rattus norvegicus 81 Ube2a ENSRNOG00000039985 ENSRNOT00000083861,ENSRNOT00000061455 2 2 2 80 X 123496139 123496159 TACTTCAGAACCGTTGGAGTC 60 123496195 123496536 GATTAGGTTCATCCAATAGAGACTG 59 NA Rattus norvegicus 81 Picalm ENSRNOG00000018322 ENSRNOT00000025415 3 1 4 81 1 154425445 154425464 GCCAACCTTTCATCCATCTG 59 154425507 154439761 CGGAGAAGGACTGAATCCTC 60 NA Rattus norvegicus 81 Pmpca ENSRNOG00000026775 ENSRNOT00000031607,ENSRNOT00000031622 1 2 2 80 3 3836883 3837388 CCGAGATGATTCATGAAGCTG 59 3837427 3837448 TCTTCCCTATGTTCTCTACAGG 59 NA Rattus norvegicus 81 Pmpca ENSRNOG00000026775 ENSRNOT00000031622 3 1 2 88 3 3837891 3837909 GTCAAATGTCAGCCTTGGC 60 3837960 3838059 GAAATCCTCCTCAGGAAGGAG 60 NA Rattus norvegicus 81 tGap1 ENSRNOG00000022511 ENSRNOT00000082912,ENSRNOT00000033404 1 2 4 80 2 92572413 92572434 AACTGTTTGGAAGAGAACTCAG 59 92572472 92572900 TTAGTAGGTACAGCATGTCCAG 59 NA Rattus norvegicus 81 tGap1 ENSRNOG00000022511 ENSRNOT00000082912,ENSRNOT00000033404 3 2 4 85 2 92566976 92569996 CAAGACTACTCCAAGGGCA 59 92570042 92570063 ATTTCTTAAGTCCCGTGAACTG 59 NA Rattus norvegicus 81 tGap1 ENSRNOG00000022511 ENSRNOT00000082912 1 1 4 86 2 92557891 92557909 TTCAGGTCAGACAACACTG 57 92557959 92560993 TTCCATGGAACGAAAGGTG 58 NA Rattus norvegicus 81 tGap1 ENSRNOG00000022511 ENSRNOT00000082912 2 1 4 87 2 92557890 92557909 ATTCAGGTCAGACAACACTG 58 92557959 92560993 TTCCATGGAACGAAAGGTG 58 NA Rattus norvegicus 81 Kdm3a ENSRNOG00000007814 ENSRNOT00000045279 3 1 2 85 4 99504710 99504730 CAACCACGAAGATAAACTGCA 59 99503778 99503797 CTGGATTCACGGCTTTCAG 59 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000083079 2 1 7 81 1 102929716 102929735 ACTCTGAAGTCACTGAACCC 59 102929779 102930386 CTCATAGCCACTGCTTGTG 59 NA Rattus norvegicus 81 Crispld2 ENSRNOG00000016752 ENSRNOT00000068389,ENSRNOT00000087857 1 2 3 80 19 52681774 52681792 GATGTCACCAGGAATGGGA 59 52681835 52682695 CGGCTTGTATTTACTCAGGG 59 NA Rattus norvegicus 81 Klc3 ENSRNOG00000018101 ENSRNOT00000068092,ENSRNOT00000082928 2 2 2 92 1 80307607 80307950 AGATCCGTGAGAAGGTCCT 60 80307533 80307551 GAAACTTGCCCTGGTTCTG 59 NA Rattus norvegicus 81 Fam126a ENSRNOG00000010517 ENSRNOT00000014023 1 1 2 81 4 7707630 7707651 TCCAGAATATCAAGGAATGCAG 58 7707688 7722193 CTGTTAACTCTGTATCTCCATGTC 59 NA Rattus norvegicus 81 Sh2d3c ENSRNOG00000054560 ENSRNOT00000087762,ENSRNOT00000078366 1 2 2 80 3 11790208 11791182 GATGGCCCAGATTTCAAGG 59 11791225 11791244 TTCTCATACAGAATGGCACC 58 NA Rattus norvegicus 81 Slc11a2 ENSRNOG00000019550 ENSRNOT00000081327,ENSRNOT00000026531 2 2 4 80 7 142036961 142036979 TTTGCCCTCATCCCTATCC 59 142035034 142036917 GATCCTCCAGCCTATTCCG 59 NA Rattus norvegicus 81 Mff ENSRNOG00000015428 ENSRNOT00000020705 1 1 3 80 9 90891937 90907023 GTCAGAAACGATTCCATGTATGG 60 90907061 90907081 ATCTACCACAGACATGTCCTC 59 NA Rattus norvegicus 81 Gpn1 ENSRNOG00000004941 ENSRNOT00000087938,ENSRNOT00000006599 2 2 2 80 6 26261342 26262443 AGTACGAAAGGGAATATCGTC 57 26259813 26259832 GCTCCTTCTGCTCATTACTC 58 NA Rattus norvegicus 81 Tln2 ENSRNOG00000018373 ENSRNOT00000024885,ENSRNOT00000081450,ENSRNOT00000012026,ENSRNOT00000064613,ENSRNOT00000031988 3 5 5 80 8 73060927 73060946 CCATTATGTTTGCAACAGCT 57 73058136 73060885 TCTTCAGAATGTTCTCCCTG 57 NA Rattus norvegicus 81 Muc15 ENSRNOG00000004703 ENSRNOT00000079600,ENSRNOT00000006256 1 2 2 80 3 101908250 101910819 GAAACGAACCAGTTCTGCG 60 101910857 101910881 CTCGGTTGTAGTAACTAGAATTTCC 59 NA Rattus norvegicus 81 Ccz1b ENSRNOG00000001032 ENSRNOT00000080567 3 1 2 91 12 12649924 12649942 CAGACACATCGAACCTGAG 58 12652549 12652800 AATGAGGTAAACTTCCGTAGTG 58 NA Rattus norvegicus 81 Ccz1b ENSRNOG00000001032 ENSRNOT00000001365 1 1 2 80 12 12652932 12658160 TGTTTATAAGGCCATGAGCG 59 12658968 12658987 AATCTTCGGCAGAAATCCAG 58 NA Rattus norvegicus 81 Ptprj ENSRNOG00000034025 ENSRNOT00000077943,ENSRNOT00000049832 3 2 2 98 3 79258840 79259951 AATCCAAGTTAATCCGAGTGG 58 79257514 79258783 GCTTCAGATCCTCATATTCCTC 58 NA Rattus norvegicus 81 Pde7a ENSRNOG00000013048 ENSRNOT00000067725,ENSRNOT00000088167 3 2 2 80 2 104057848 104057868 AATCCTTACCACAATGCAGTC 59 104053535 104057806 ATTGGCAAGCTTAGGTTCC 58 NA Rattus norvegicus 81 Sptbn1 ENSRNOG00000005434 ENSRNOT00000084595 3 1 3 80 14 114540285 114540305 GAGCACAGATGAGGGACAG 60 114540223 114540242 GCTTCCTTTCATTCAAGGGC 60 NA Rattus norvegicus 81 Lonrf3 ENSRNOG00000013092 ENSRNOT00000017550 3 1 2 81 X 122945068 122945092 GAGAATTTCTCTACTGTGTATCCCT 60 122945130 122951528 GGAAGCTCTGAATTCTCCCT 59 NA Rattus norvegicus 81 Lonrf3 ENSRNOG00000013092 ENSRNOT00000089266 3 1 2 81 X 122945066 122945090 CAGAGAATTTCTCTACTGTGTATCC 59 122945126 122949397 GAAACTAAAGAGAAGCCTTTGC 58 NA Rattus norvegicus 81 Stxbp5 ENSRNOG00000013351 ENSRNOT00000040559 3 1 3 93 1 3879193 3890876 CGACTTCCGCAAAGATGTC 59 3872197 3872215 CTCCGAGATCTGCTGAAGG 60 NA Rattus norvegicus 81 Ddx19a ENSRNOG00000018033 ENSRNOT00000024793 3 1 5 80 19 43257987 43258891 AGAGGAAGAAGAGAAAGAGGAC 59 43258929 43258950 TTGGTGTTATCCACAAGATTGC 60 NA Rattus norvegicus 81 Ddx19a ENSRNOG00000018033 ENSRNOT00000082566,ENSRNOT00000091788,ENSRNOT00000087474,ENSRNOT00000084462,ENSRNOT00000024793 1 5 5 80 19 43234683 43234701 AAGTGATTGAGCAGATGGG 58 43234742 43237115 GACCTCTTTCCAATTTATTGCC 58 NA Rattus norvegicus 81 Apcdd1l ENSRNOG00000028440 ENSRNOT00000036546,ENSRNOT00000091966 2 2 2 181 3 171885206 171890355 AAAGTGTTGTGCACCACAC 60 171885043 171885061 AAAGCTGAAATGCCGAGTG 59 NA Rattus norvegicus 81 Zmym6 ENSRNOG00000013865 ENSRNOT00000019135 2 1 2 99 5 145139849 145148308 GATGCTCATGAATATGGACCTC 59 145149568 145149586 GGGATGGTAGACCAACCTG 60 NA Rattus norvegicus 81 Tox4 ENSRNOG00000012844 ENSRNOT00000081830,ENSRNOT00000017476 3 2 2 80 15 28706867 28707117 GAGTGTCAGGCTACTGTGG 60 28707161 28707179 AGTAGTCACAGGAGGTGGT 60 NA Rattus norvegicus 81 Arhgef10l ENSRNOG00000050636 ENSRNOT00000074074,ENSRNOT00000075382 1 2 3 80 5 159095261 159095284 CTGGAGGAAGATGTGATTTATGAC 59 159095004 159095224 GGTTAATGTCATCGCCATACC 59 NA Rattus norvegicus 81 Tcte3 ENSRNOG00000015293 ENSRNOT00000078312 2 1 2 81 1 56973184 56975910 AGCAGATATTAAAGGCCAGTC 58 56973123 56973141 CGATCTGCCAATTCAAGTG 57 NA Rattus norvegicus 81 Dpt ENSRNOG00000002947 ENSRNOT00000077070,ENSRNOT00000066119,ENSRNOT00000079796 3 3 3 92 13 83073935 83085477 ATGGAATGGTACCAGAAGTG 57 83085532 83085550 AAATTGCCACTCTCGATCC 58 NA Rattus norvegicus 81 Acp1 ENSRNOG00000005260 ENSRNOT00000077442 2 1 2 88 6 49844195 49844450 CAGATAACTGGGCCATTGAC 59 49844126 49844145 ATTTCTTAGGCAGCTGACAG 58 NA Rattus norvegicus 81 Cd151 ENSRNOG00000019215 ENSRNOT00000026079,ENSRNOT00000089241 3 2 2 80 1 214011977 214012286 GTTACGCTTGTACTTCATCCT 58 214012326 214012346 TGATAGTAGACATAGGCCAGG 58 NA Rattus norvegicus 81 Csnk1d ENSRNOG00000036676 ENSRNOT00000015178,ENSRNOT00000054936 3 2 2 80 10 110159060 110161379 ATGCTCAAATTTGGTGCCAG 60 110158999 110159021 GGAGTGTCTTAATCGTTCTTCTC 59 NA Rattus norvegicus 81 Clec18a ENSRNOG00000022721 ENSRNOT00000073721 1 1 2 97 19 43163612 43163630 TCTCTTGCTTCTGCTCCTG 59 43163688 43164044 AGATGATATCTTGCACAATGGG 59 NA Rattus norvegicus 81 LOC100360274 ENSRNOG00000047581 ENSRNOT00000061476,ENSRNOT00000079703 2 2 3 147 9 12477292 12581721 ACAGTTCCTACCGCATCAG 60 12581832 12581850 CAGAACCTCTTTGCCTCCA 60 NA Rattus norvegicus 81 Snx27 ENSRNOG00000020893 ENSRNOT00000028389,ENSRNOT00000071442 3 2 2 80 2 195751946 195751966 CATTAAAGCGGAGGAGAAGTC 59 195744622 195751908 CTTAGCATGTTGAGGTACATGAC 60 NA Rattus norvegicus 81 Prpf18 ENSRNOG00000018396 ENSRNOT00000024872 1 1 2 80 17 77605083 77607625 GATGTGGCTACAAGGTACAG 58 77607666 77607686 CTAGTTCAAGTTCCAGCACTG 59 NA Rattus norvegicus 81 Runx1t1 ENSRNOG00000005673 ENSRNOT00000078102 1 1 2 84 5 27313144 27313162 AAACACTTGGAGAGCACTG 58 27313209 27386166 CTTCTCGGTACGATCTTGAC 58 NA Rattus norvegicus 81 Runx1t1 ENSRNOG00000005673 ENSRNOT00000066191 2 1 2 153 5 27327119 27386168 CTGATCGTACCGAGAAGCA 59 27386284 27388319 GTGCCATTCGTTAATGTCGT 59 NA Rattus norvegicus 81 Srebf1 ENSRNOG00000003463 ENSRNOT00000004753 2 1 2 95 10 46579431 46582804 ATTTGAAGACATGCTTCAGCTC 60 46579357 46579375 CCTGTGTCTCCTGTCTCAC 59 NA Rattus norvegicus 81 Ccdc28b ENSRNOG00000047578 ENSRNOT00000083369,ENSRNOT00000075659 2 2 2 80 5 147825161 147825180 CGTCTATGAGATGGAGGGAG 59 147824993 147825119 CATTCTTTCCCAAAGGCCTG 60 NA Rattus norvegicus 81 Mfsd8 ENSRNOG00000012729 ENSRNOT00000050764 1 1 2 80 2 127723188 127754511 CCGGAAGCAGATTGATCAG 58 127723126 127723144 GCTACCATTTGGCCAAGAC 59 NA Rattus norvegicus 81 Cbfa2t3 ENSRNOG00000014723 ENSRNOT00000019820 1 1 2 81 19 55510342 55510360 CATCTACCACCCTGGAGAG 59 55461117 55510297 TTCTCCTTCCTGTGAGCTG 59 NA Rattus norvegicus 81 Slc16a10 ENSRNOG00000000588 ENSRNOT00000000718,ENSRNOT00000087226 2 2 2 108 20 45189546 45189564 AACTTTGCCCTCTTCAAGG 58 45157496 45189477 CCTTTACATGGTTCATCAAGTG 58 NA Rattus norvegicus 81 Pbx3 ENSRNOG00000022162 ENSRNOT00000082036,ENSRNOT00000029600 2 2 2 80 3 13247869 13270128 ATCACAGTATCACAGGTATCCA 59 13247810 13247829 CTCCTCTTGAAATTTGCCGA 59 NA Rattus norvegicus 81 Pbx3 ENSRNOG00000022162 ENSRNOT00000082036,ENSRNOT00000029600 3 2 2 81 3 13247869 13270127 TCACAGTATCACAGGTATCCA 58 13247808 13247826 GCCTCCTCTTGAAATTTGC 57 NA Rattus norvegicus 81 Mbp ENSRNOG00000016516 ENSRNOT00000022303,ENSRNOT00000022280 3 2 5 98 18 79413330 79424849 CCACATGTACAAGGACTCAC 58 79424910 79424928 AAGAAGTGGACTACTGGGT 58 NA Rattus norvegicus 81 Bclaf1 ENSRNOG00000058050 ENSRNOT00000078589 3 1 5 80 1 15815315 15815333 GAGCGGTTCACTTCATACC 58 15815375 15816593 GTCAATCCTCCTGTGTATCTC 58 NA Rattus norvegicus 81 Igf1 ENSRNOG00000004517 ENSRNOT00000038780 2 1 4 80 7 28468812 28468831 CTGAAGCCTACAAAGTCAGC 59 28468871 28485476 CAAGTGTACTTCCTTCTGAGTC 59 NA Rattus norvegicus 81 Igf1 ENSRNOG00000004517 ENSRNOT00000081822,ENSRNOT00000005995,ENSRNOT00000085680 3 3 4 84 7 28468857 28468875 ACTGACATGCCCAAGACTC 60 28470322 28485473 GTGTACTTCCTTTCCTTCTCCT 60 NA Rattus norvegicus 81 Akap3 ENSRNOG00000059227 ENSRNOT00000086525,ENSRNOT00000079225 2 2 2 90 4 159417230 159425169 GAATCCAGGAGAAGCTGCT 60 159425222 159425241 TCATACCTAAGCACCGACTG 59 NA Rattus norvegicus 81 Immt ENSRNOG00000009097 ENSRNOT00000043199 1 1 2 80 4 99769249 99769268 TGAGGACACTATAAACACCG 57 99769311 99773154 AAACTCTTGGCTAGAGCTG 57 NA Rattus norvegicus 81 Glcci1 ENSRNOG00000008524 ENSRNOT00000011138,ENSRNOT00000086735 1 2 2 80 4 34602699 34610181 ATGATCGTGATAAAGACAGTGG 58 34610221 34610240 ACATGTAGCTGTTGTTTGGT 58 NA Rattus norvegicus 81 Zfp622 ENSRNOG00000059443 ENSRNOT00000087109,ENSRNOT00000084541 2 2 2 81 2 78408015 78409684 AGGAAGACGACGAAGATTGG 60 78409728 78409746 GCATCCTCTTCCTCCACTC 60 NA Rattus norvegicus 81 Dock9 ENSRNOG00000011969 ENSRNOT00000064705 2 1 2 81 15 107971212 107972625 TTCGGACAGGGATTCTTCG 60 107971149 107971167 AAATCTCTGACAGAGGCGT 59 NA Rattus norvegicus 81 LOC102549842 ENSRNOG00000049259 ENSRNOT00000079626,ENSRNOT00000071889 1 2 3 81 1 37957326 37957344 CCCTGCTCAATGGAATCTG 58 37956098 37957283 CTTAGAGAAAGCAAGACCCAG 59 NA Rattus norvegicus 81 Rdh7 ENSRNOG00000004391 ENSRNOT00000005875,ENSRNOT00000065232 3 2 2 81 7 71136414 71138334 GAGTTGGGAACAGAGGACTC 60 71136352 71136372 TTTCTCATCCACTCATTGGGA 59 NA Rattus norvegicus 81 Ppie ENSRNOG00000014762 ENSRNOT00000043799 3 1 2 106 5 140825817 140825836 TGACTTCACAAACCACAACG 59 140825412 140825748 AGTCAGAGCATGCATCTGG 60 NA Rattus norvegicus 81 Slc19a2 ENSRNOG00000002839 ENSRNOT00000076752,ENSRNOT00000003817 2 2 3 69 13 82562071 82562089 CATCTACAATGGCGGTGTG 59 82563169 82563188 ATAACCAACCGCAAACACAG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000060253 2 1 10 80 15 32828473 32852780 TGACCGTTCTACCTGATGTC 59 32852820 32852841 AGAGGGTGATGTTATCAGACTG 59 NA Rattus norvegicus 81 Sppl2a ENSRNOG00000011652 ENSRNOT00000015568 1 1 2 107 3 119384579 119384597 ATCATGGTGGAACTTGCTG 58 119383813 119384331 TACTGGCAATTTCTCATGGG 58 NA Rattus norvegicus 81 Sppl2a ENSRNOG00000011652 ENSRNOT00000015568 2 1 2 108 3 119384579 119384597 ATCATGGTGGAACTTGCTG 58 119383812 119384331 CTACTGGCAATTTCTCATGGG 59 NA Rattus norvegicus 81 Sympk ENSRNOG00000014353 ENSRNOT00000084985 3 1 2 141 1 79954827 79957197 CATCAAAGCCACCAACCTG 59 79957302 79957320 GTACATGGTCAGGGACTGG 60 NA Rattus norvegicus 81 Acan ENSRNOG00000028992 ENSRNOT00000047848 2 1 2 81 1 140811740 140818274 CGCTGCAGACATTGATGAG 59 140818318 140818337 GCATGTGAAAGTGTCCAAGG 60 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000091945 3 1 6 177 20 3437182 3437579 CTGCATTCAACAAATCCAAAGG 59 3436894 3437048 CCTTATAGATCTCCTCCACAGTC 59 NA InUTR Rattus norvegicus 81 Slc2a2 ENSRNOG00000011875 ENSRNOT00000091221 2 1 2 80 2 114423537 114423582 CAGAGACCAAGATCACCGG 60 114423624 114423644 CGATGTCATATCCGAACTGGA 60 NA Rattus norvegicus 81 Slc2a2 ENSRNOG00000011875 ENSRNOT00000091221 3 1 2 83 2 114423534 114423579 TGGCAGAGACCAAGATCAC 59 114423624 114423644 CGATGTCATATCCGAACTGGA 60 NA Rattus norvegicus 81 AABR07042571.1 ENSRNOG00000026262 ENSRNOT00000061769 3 1 2 88 19 118936 118955 TTGGTTGAATTGAACCTGGA 58 118223 118690 CTTGAAGTTTCTGATACTTGCC 58 NA Rattus norvegicus 81 Smc5 ENSRNOG00000030572 ENSRNOT00000067796 1 1 2 80 1 241021915 241021935 CTTGTGGCTGAGAAATAACAG 57 241010359 241021874 TTCTTATTGTCACGAACCGT 58 NA Rattus norvegicus 81 Golim4 ENSRNOG00000024213 ENSRNOT00000037115 1 1 3 80 2 174342086 174347592 CAGCTTCAAGATGTCAAGACTC 59 174342027 174342048 ATTTCGAAAGCTTGGAATCCTG 60 NA Rattus norvegicus 81 Csrp2 ENSRNOG00000003772 ENSRNOT00000067011 3 1 2 88 7 53648480 53649031 CTACTGTAAAGGGTGCTACG 58 53649081 53649100 ACTACTGAGCATGAACAAGG 58 NA Rattus norvegicus 81 Atp1b1 ENSRNOG00000002934 ENSRNOT00000076578 1 1 2 89 13 82743493 82745706 AGCACAATTGGATTGACACAG 60 82743424 82743442 CACATAGGCCTCGTAGCTC 60 NA Rattus norvegicus 81 Cpsf2 ENSRNOG00000005733 ENSRNOT00000008612,ENSRNOT00000091300 1 2 2 80 6 125877504 125877523 GCCATCTATGCAACAATTCC 58 125877564 125877662 TTCTGTATTGTGTCGAGACTG 58 NA Rattus norvegicus 81 Cpsf2 ENSRNOG00000005733 ENSRNOT00000008612,ENSRNOT00000091300 2 2 2 80 6 125877550 125877649 TGTACGATCTTTATCAGTCTCG 58 125877690 125877708 TATCAAAGGCTGCATCCAC 58 NA Rattus norvegicus 81 Adgrl3 ENSRNOG00000030149 ENSRNOT00000059942,ENSRNOT00000044659,ENSRNOT00000048175 3 3 3 181 14 28430100 28448338 AAGTCATGGGTTATAGGTGC 57 28422441 28429957 TCTTTCCGTACCTTCTTCTG 57 NA Rattus norvegicus 81 Phykpl ENSRNOG00000048357 ENSRNOT00000086443 1 1 2 84 10 34954489 34954509 AGCTGGATGACATTCTAACAG 58 34955438 34957621 TGAGTATCTTCTGGAGGGTG 58 NA Rattus norvegicus 81 LOC100361584 ENSRNOG00000023561 ENSRNOT00000078495 3 1 3 81 4 158244429 158244448 AGCAGCGAGATGAATTTGAG 59 158244490 158334050 GCTTTGATCTCGTACATCTCC 59 NA Rattus norvegicus 81 Nup37 ENSRNOG00000004727 ENSRNOT00000079168,ENSRNOT00000006760,ENSRNOT00000089161 2 3 3 80 7 28728085 28728105 ATTTGGTGTTTCATCCCAGAG 59 28728146 28737444 CTTCCAAGCTCCAAATCCTG 59 NA Rattus norvegicus 81 Triobp ENSRNOG00000059015 ENSRNOT00000087548,ENSRNOT00000086853 2 2 2 80 7 120214409 120214721 CTTCCAGATCCATACCAAGGA 59 120214763 120214781 AGAGCCTCAATCCAGTTCC 59 NA Rattus norvegicus 81 Ucn ENSRNOG00000006090 ENSRNOT00000008037 3 1 1 158 6 26602156 26602177 CTGGATAGACACTCCGATAACC 60 26602557 26602575 CAGATTCGGATCCTGGACC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Papola ENSRNOG00000004827 ENSRNOT00000064957,ENSRNOT00000083732 1 2 3 80 6 129643811 129646853 CACAGACACAGTTTATAGGCA 58 129646895 129646913 CTCTTCACATGCATTGCTG 57 NA Rattus norvegicus 81 Atp7a ENSRNOG00000061367 ENSRNOT00000080141,ENSRNOT00000091527 3 2 3 80 X 77137647 77137666 ACTAACCTCTCCAGAACCCT 60 77137709 77138844 GGCTCTTTCATGTCTGCTG 59 NA Rattus norvegicus 81 Tor2a ENSRNOG00000022514 ENSRNOT00000030694,ENSRNOT00000067500 3 2 2 82 3 11797057 11797699 AGTACAAGAATGAGCTCAAGAG 58 11797741 11797760 GTCCATCTCATCGAAGAGGA 59 NA Rattus norvegicus 81 Tor2a ENSRNOG00000022514 ENSRNOT00000030694 2 1 2 80 3 11797853 11798609 CTTTATCAGCAATACTGGAGGTG 59 11798648 11798667 ATTTCTTCCCTGTCCCTACG 59 NA Rattus norvegicus 81 Acad11 ENSRNOG00000010940 ENSRNOT00000038383,ENSRNOT00000081281 3 2 2 80 8 112661828 112670852 GAAGCTCTATGAGCATGAAGTC 59 112670892 112670911 AAGGTCAGTAAGCGGATCTC 59 NA Rattus norvegicus 81 Slc11a1 ENSRNOG00000014956 ENSRNOT00000088679 2 1 5 84 9 81657358 81657376 CTCATGAGCATCGCTTTCC 59 81657422 81657690 CCCAGAGCAGTTTGAATTCAG 60 NA Rattus norvegicus 81 Htr2c ENSRNOG00000030877 ENSRNOT00000090922 3 1 2 80 X 118200496 118200516 CTTAATGTCCCTAGCCATTGC 59 118265396 118289352 ACATAATCTCCCAGAATTGCTC 58 NA Rattus norvegicus 81 Zfr ENSRNOG00000011627 ENSRNOT00000016196,ENSRNOT00000087636 2 2 3 80 2 62208374 62208503 TTATTCTCAAAGGCAGCCC 58 62208547 62208565 GTTGGTCAGTCATTGTTGC 58 NA Rattus norvegicus 81 Atp5f1 ENSRNOG00000046299 ENSRNOT00000075083 3 1 4 81 2 208569517 208569535 AATCAACAGGGAGAAGGCA 59 208567485 208569474 CAGGGCAATGTTATTCCTCTG 59 NA Rattus norvegicus 81 Epha5 ENSRNOG00000002024 ENSRNOT00000043938,ENSRNOT00000067439 3 2 3 82 14 25791723 25791741 AGCTTCCACCTCTTGTGTC 60 25791787 25859216 GAGAAGGAGTTGTGCATGC 59 NA Rattus norvegicus 81 Eno1 ENSRNOG00000017895 ENSRNOT00000081579,ENSRNOT00000024106 1 2 2 80 5 167297623 167298213 CAAGGACTACCCAGTGGTG 60 167298256 167298275 GCAGTAGCTGTGAACTTCTG 59 NA Rattus norvegicus 81 St6gal1 ENSRNOG00000001823 ENSRNOT00000002499,ENSRNOT00000002496 2 2 3 80 11 80933954 80967275 CCTAATGAACTCTCAGTTAGTCAC 59 80933897 80933920 CATACAATTAGGATTCCTTCGGTG 60 NA Rattus norvegicus 81 Slc34a3 ENSRNOG00000010451 ENSRNOT00000079773 2 1 2 115 3 2452787 2453038 AGAAATGCAGCCCTACCTG 60 2452690 2452711 AGTTGGTCAGTATTCTTCAGCT 60 NA Rattus norvegicus 81 Pmfbp1 ENSRNOG00000014505 ENSRNOT00000089515 2 1 2 83 19 42163246 42175295 CCAACCACAACAAGAAGCA 59 42163181 42163202 TGAGGTGATACTGCTTATTGGA 59 NA Rattus norvegicus 81 Foxn3 ENSRNOG00000004709 ENSRNOT00000006604 3 1 2 98 6 123211231 123290821 TTCTGCAAGTTTCTCCAGGA 59 123211152 123211170 TCCCAATGGGAGTGATTGG 59 NA Rattus norvegicus 81 AABR07069698.1 ENSRNOG00000050232 ENSRNOT00000007903 3 1 1 70 8 37704183 37704202 CTGCAATATGGTACATCGCT 58 37702372 37702393 GTGTCAAGACTCAATAAAGAGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fam178a ENSRNOG00000014482 ENSRNOT00000082412 1 1 2 80 1 264723509 264723530 TACCTGACCTACATTCTTCTCC 59 264723571 264724740 GAAGTGTTTCCGTTGTCCA 58 NA Rattus norvegicus 81 LOC361985 ENSRNOG00000017758 ENSRNOT00000046919,ENSRNOT00000089801 1 2 2 80 2 189400871 189400889 GGCGTCAAGTAGTAACTGG 58 189400931 189401324 AACAGCAATACGAATACCAGG 59 NA Rattus norvegicus 81 Homer3 ENSRNOG00000020229 ENSRNOT00000027428 2 1 2 80 16 20883160 20883178 AGAAAGAAGCAACCAGCCA 60 20883009 20883119 TCTTCAAAGTCTGGATCTCCTG 60 NA Rattus norvegicus 81 Sult1d1 ENSRNOG00000001960 ENSRNOT00000072483,ENSRNOT00000080114 1 2 3 104 14 22122626 22124644 ATGAGGAAGGGCATTTCAG 58 22124711 22124730 CTTGAGTGTTGACTCTTCCA 58 NA Rattus norvegicus 81 Sult1d1 ENSRNOG00000001960 ENSRNOT00000060179 3 1 3 90 14 22122668 22122688 TTCTGGTCACATTACAGAAGG 58 22122750 22124753 ACTCCCTAGATCTCTGATCTC 57 NA Rattus norvegicus 81 Fam227a ENSRNOG00000021795 ENSRNOT00000078320,ENSRNOT00000056178 1 2 3 99 7 120867715 120867735 CCATGAACCTGTGGATTTCAG 59 120865901 120867399 GATATGTCCGATAAACAGCGG 59 NA Rattus norvegicus 81 Erbb2 ENSRNOG00000006450 ENSRNOT00000049070 2 1 3 99 10 86383149 86383646 AGAGGATTGTGGTCTCGAG 59 86383708 86383727 GAAATGACTGCAGTTGACAC 58 NA Rattus norvegicus 81 Syne3 ENSRNOG00000005287 ENSRNOT00000035826 3 1 2 80 6 128656412 128657957 ACAGCCACCAGGAAATCTC 60 128653898 128653916 GAGGATCTGTCCTTCTGGG 59 NA Rattus norvegicus 81 Galnt2 ENSRNOG00000019143 ENSRNOT00000080860 3 1 2 80 19 57106243 57106520 CTATGGAAATATTCAGAGCAGACTG 60 57106556 57106576 TAGACGTTGTCTAGGTACCAC 59 NA Rattus norvegicus 81 Wdr77 ENSRNOG00000016394 ENSRNOT00000076654,ENSRNOT00000086279,ENSRNOT00000022571 1 3 3 80 2 208423971 208426476 ATTCATACCGAGCTCATGC 58 208426518 208426538 CACTGCATGAAAGAAACACAG 58 NA Rattus norvegicus 81 LOC100911980 ENSRNOG00000045632 ENSRNOT00000086054 2 1 2 90 15 29209018 29209036 AGTGCAAGAGTCAGACTCG 60 29209084 29209264 GATCGTTTCTCTAATGATTTCTCCC 60 NA Rattus norvegicus 81 Ankrd46 ENSRNOG00000025504 ENSRNOT00000036904 2 1 1 60 7 75286746 75286765 CTCGAAATTGGAGACCATGC 59 75281146 75281165 CAGTGAATGGCTTTCCATGG 60 NA DesignNoJunction Rattus norvegicus 81 Ldhd ENSRNOG00000019036 ENSRNOT00000079539 2 1 2 81 19 43838821 43839356 GGAAGTAAGGCCTATTCCAC 58 43838759 43838777 TAAGCTCCTCCTTGGTCTC 58 NA Rattus norvegicus 81 Naf1 ENSRNOG00000026403 ENSRNOT00000081686,ENSRNOT00000033916 1 2 2 80 16 24586316 24588409 ACTCAAACAGGACAGAGGA 58 24584351 24584370 TCATCACTGAAATCCAAGGC 58 NA Rattus norvegicus 81 Smad2 ENSRNOG00000018140 ENSRNOT00000046847,ENSRNOT00000092173,ENSRNOT00000089468 3 3 3 106 18 72576120 72593018 GCACTTGCTCTGAAATTTGG 58 72593087 72594076 ACGACCATCAAGAGACCTG 59 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000082680,ENSRNOT00000084685,ENSRNOT00000077517,ENSRNOT00000014073 2 4 8 85 6 128078984 128079005 GCATCAAAGAAGTCTTCTCCAC 60 128079051 128079994 CTTGTGGACCACCTGAGAG 60 NA Rattus norvegicus 81 Ccpg1 ENSRNOG00000053428 ENSRNOT00000085403 2 1 2 84 8 79685397 79685416 CGAAGATGAGCTGAACAGTG 59 79685459 79687520 TGACTGGGTCTTGAAATCTAGAG 60 NA Rattus norvegicus 81 Rn60_2_2279.4 ENSRNOG00000037118 ENSRNOT00000076214,ENSRNOT00000055983 2 2 2 84 2 208398702 208398720 CTCCTCATCAAGAGCTGCA 60 208398123 208398406 TAGATGACAGCTTGGTGGG 59 NA Rattus norvegicus 81 Rn60_2_2279.4 ENSRNOG00000037118 ENSRNOT00000076214,ENSRNOT00000055983 3 2 2 84 2 208398701 208398719 TCCTCATCAAGAGCTGCAG 60 208398122 208398406 ATAGATGACAGCTTGGTGGG 60 NA Rattus norvegicus 81 Erc1 ENSRNOG00000009264 ENSRNOT00000091473 1 1 2 80 4 152214572 152233312 ATGCTGAGAAACAGGTGGA 59 152214510 152214529 ACAGCTTAGCTTTCATGGAC 58 NA Rattus norvegicus 81 Cdk5rap2 ENSRNOG00000005788 ENSRNOT00000007710 3 1 2 83 5 86406717 86406735 TTCAGTCCCTCCAAATGGA 58 86403567 86406673 GACATTTGTTGACATCTTGCTG 59 NA Rattus norvegicus 81 Nod1 ENSRNOG00000010629 ENSRNOT00000088085,ENSRNOT00000014324 3 2 2 80 4 85127670 85129420 CTGAAGCATTTATGGCTAATCC 58 85127611 85127629 GGTATTCTTCTGCAGTGCC 59 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000019265 1 3 9 80 9 81545176 81545195 CAACACCATCAACCTGATCC 59 81545233 81545746 CGTGTATGAATATAGGCCTTAGAG 59 NA Rattus norvegicus 81 Srd5a3 ENSRNOG00000002216 ENSRNOT00000003021 3 1 3 82 14 34561654 34562177 TTCTCGGATACAAGCAGGC 60 34561590 34561610 AGAGTCTCCGAAGACTATGGA 60 NA Rattus norvegicus 81 Ilf2 ENSRNOG00000014154 ENSRNOT00000048214 2 1 2 80 2 189871159 189871177 AGACCTCCTTCAGTGAAGC 59 189871219 189871950 GGACTTCTTCAATTTGCTGCT 60 NA Rattus norvegicus 81 Rfng ENSRNOG00000050298 ENSRNOT00000078052 3 1 2 138 10 109964975 109964993 GGAGAACTTGCAGAAGCTG 59 109943871 109964574 TTCAAATAATCGTGTAGGGTCC 58 NA Rattus norvegicus 81 Ppp6r3 ENSRNOG00000015540 ENSRNOT00000065950,ENSRNOT00000020886 3 2 2 80 1 218734759 218734778 GCTTGCTCCAAACCAATACC 60 218733325 218734719 AGAACATGTCCAATATAACGCC 59 NA Rattus norvegicus 81 Mynn ENSRNOG00000027923 ENSRNOT00000078148 1 1 2 85 2 116402788 116402811 CCATACATATGTGGTATTTGTGGG 60 116401759 116402744 GGTCGTTCTCCTGTATGGG 60 NA Rattus norvegicus 81 Tulp3 ENSRNOG00000005767 ENSRNOT00000007634 3 1 2 80 4 161642548 161642567 GATAAGAAAGGCATGGACCG 59 161641686 161642508 AAGAAATATCTTGCGGTTCTCC 59 NA Rattus norvegicus 81 Cngb1 ENSRNOG00000031773 ENSRNOT00000060351 3 1 3 99 19 10165023 10171291 AAGAGGAGCCTATTGTCCTG 59 10171353 10171371 TGGATCGATGCTGTCTCTG 59 NA Rattus norvegicus 81 Rhobtb1 ENSRNOG00000000633 ENSRNOT00000087085 3 1 2 80 20 20644277 20649958 TGGTCACTCTGTAAACAGCA 59 20644216 20644237 GAGTACTTCACCATCAATGCTC 59 NA Rattus norvegicus 81 Rbm28 ENSRNOG00000005468 ENSRNOT00000064007 1 1 2 80 4 56409739 56409760 GTGGATGATAAACAGCTAAGGA 58 56406878 56409700 CACTCTACACTCCTTAATGCG 59 NA Rattus norvegicus 81 Tns4 ENSRNOG00000027350 ENSRNOT00000089131,ENSRNOT00000030720 2 2 2 94 10 86991677 86992142 TTTGGAAGCAATCAGTCCCT 60 86991602 86991620 AGACTGGAAGAAGAGCTGG 59 NA Rattus norvegicus 81 Lilrb3l ENSRNOG00000053260 ENSRNOT00000087957 1 1 4 80 1 64009837 64010152 ATAGTCTCAGGACCCATCAG 58 64011142 64011161 CTTCAGGTACCTTTGCAGTC 59 NA Rattus norvegicus 81 Lilrb3l ENSRNOG00000053260 ENSRNOT00000080799,ENSRNOT00000080820 3 2 4 84 1 63759680 63842605 CTGTCTTGGACTGACTCTGG 60 63842830 63842848 AGAATCTGGCTGTGCTCTG 60 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000020656 ENSRNOT00000028039,ENSRNOT00000090164 1 2 3 88 8 117769894 117769912 AAATCCAGGACCACTACCC 59 117769964 117771863 GTCTTCATAGGACTCGCCC 60 NA Rattus norvegicus 81 Dnm1 ENSRNOG00000033835 ENSRNOT00000064039,ENSRNOT00000047921 2 2 2 80 3 11366300 11366320 ACTTATGAACTGTCAGGTGGA 59 11366113 11366260 AAACTCCATCTTAACCAGCTC 58 NA Rattus norvegicus 81 Clip4 ENSRNOG00000008806 ENSRNOT00000065421 1 1 2 80 6 23275142 23275166 AGATGGACTGACGATACCTG 59 23274279 23274298 TTTACAGCTGTCTCAACGTC 58 NA Rattus norvegicus 81 Adcy4 ENSRNOG00000020401 ENSRNOT00000027719,ENSRNOT00000067536 2 2 2 80 15 34457091 34457109 GAACCGAAACTGATGGGAG 58 34456432 34457049 GTAATACTCATTCTGCCGAGC 59 NA Rattus norvegicus 81 Nek4 ENSRNOG00000017997 ENSRNOT00000024296,ENSRNOT00000084977 3 2 2 81 16 7040472 7043930 ATTGAAGGAAAGTTGCCACC 59 7043974 7043992 GTCTCCTGCTCAACATGGT 60 NA Rattus norvegicus 81 LOC100909776 ENSRNOG00000026594 ENSRNOT00000036793 1 1 1 60 5 126092297 126092315 CAGAGAAGGAGGGCTACAG 59 126087258 126087277 ATGGTCTCCTCATAAGTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Pot1 ENSRNOG00000019986 ENSRNOT00000080575 1 1 3 80 4 51930810 51931111 TTTCTCTAGTTCCGGTAACTCC 59 51930751 51930771 CACCATAGACATTGGCAACTG 60 NA Rattus norvegicus 81 Gin1 ENSRNOG00000011962 ENSRNOT00000016028,ENSRNOT00000087355 2 2 4 80 9 111210939 111210957 GAACCCTCACTCTAGTGGA 58 111208981 111210895 GCTGACAAGCATATACCCA 57 NA Rattus norvegicus 81 Ttc25 ENSRNOG00000017473 ENSRNOT00000080231,ENSRNOT00000067559 2 2 2 80 10 88466148 88468271 TGGATGAAGATCTCATCAAAGG 58 88468311 88468330 CCAGGTAGTTGATTCCAGTC 58 NA Rattus norvegicus 81 Rassf5 ENSRNOG00000005342 ENSRNOT00000080035 2 1 2 138 13 47962096 47979433 CTTCAAAGAATGTCTGTAAGGC 58 47961162 47961180 GTGTAGGTGCCATCTTCAC 58 NA Rattus norvegicus 81 Lig3 ENSRNOG00000021815 ENSRNOT00000055982,ENSRNOT00000084076 2 2 2 80 10 70150133 70150152 CTGGCTGACATGATAAACCG 59 70150193 70150447 AGGCTCATATGTACCCTTCAC 59 NA Rattus norvegicus 81 Fip1l1 ENSRNOG00000002275 ENSRNOT00000045050 1 1 2 89 14 36188572 36188590 GAAAGAAGCAGCACTTCCA 58 36174392 36188519 GGTAATCTCCTGCTTGGTG 58 NA Rattus norvegicus 81 Dync1h1 ENSRNOG00000006178 ENSRNOT00000009377 3 1 2 80 6 134984038 134984056 ATTGTCAAGGATGTGCTGC 59 134984100 134984270 CACTTCCCGTATACTTGCC 58 NA Rattus norvegicus 81 Man1a1 ENSRNOG00000000800 ENSRNOT00000087342,ENSRNOT00000057422 1 2 3 80 20 35279203 35287292 GGGTCAACATCATGTGTCAG 59 35279142 35279162 TTGTCAGACATTAACCATGCC 59 NA Rattus norvegicus 81 Prrt4 ENSRNOG00000039388 ENSRNOT00000060362 1 1 1 60 4 56450465 56450483 GCTCTGCCTCAATCAAGAC 59 56444904 56444922 GGGTCAGAAGTGGAGACAG 59 NA DesignNoJunction Rattus norvegicus 81 Clock ENSRNOG00000002175 ENSRNOT00000002976 2 1 3 105 14 34485852 34485871 TTAACCAGATTCAGAGTGGG 57 34485939 34486567 CTCTGTTGACTCTGCTGAG 58 NA Rattus norvegicus 81 Hnrnph1 ENSRNOG00000003399 ENSRNOT00000078505,ENSRNOT00000067188,ENSRNOT00000059190 3 3 3 80 10 35875728 35875747 GAGGGTATAACAGCATTGGC 59 35875790 35875899 CATAGCCTCCATAGCCTCC 59 NA InUTR Rattus norvegicus 81 Sec24c ENSRNOG00000009042 ENSRNOT00000012270,ENSRNOT00000084350,ENSRNOT00000090352 1 3 3 80 15 4039969 4040178 TATCACCAGCTTATTGGATCAG 58 4039910 4039929 TGGATAACTGGAGCAAACAC 58 NA Rattus norvegicus 81 Senp1 ENSRNOG00000022260 ENSRNOT00000080056 1 1 2 92 7 139647409 139649277 TCTAGCAGTCCTACTTTCTTCC 59 139646384 139646402 AATCTGGCGCAATCTTTCC 59 NA Rattus norvegicus 81 Arpp19 ENSRNOG00000023086 ENSRNOT00000030221 2 1 1 125 8 81963866 81963886 CAAGGTATCCTCATTTGGGAC 59 81968457 81968476 GCTTGTTCTTCATCTTTGCT 57 NA DesignNoJunction Rattus norvegicus 81 Ptch1 ENSRNOG00000019354 ENSRNOT00000086130,ENSRNOT00000026287 2 2 2 80 17 1062400 1062421 ATCAACTGGAATGAGGATAGGG 60 1061523 1062361 AACACTTTGATGAACCACCTC 59 NA Rattus norvegicus 81 Clec4a ENSRNOG00000010045 ENSRNOT00000039855,ENSRNOT00000087933,ENSRNOT00000077840 3 3 3 80 4 156063904 156064913 AAGAACAGGACTTCATCACTG 58 156064954 156064973 ATTGTCGATGACCTGAATCC 58 NA Rattus norvegicus 81 Psmb8 ENSRNOG00000000456 ENSRNOT00000000528,ENSRNOT00000089996 1 2 3 80 20 3992005 3992023 GAACCATGTCTGGTTGTGC 60 3992066 3992453 TCCGCAGATAGTATAGCCTG 59 NA Rattus norvegicus 81 Dlgap1 ENSRNOG00000016196 ENSRNOT00000087592 1 1 3 104 9 118849389 118920879 GAAGGACTGACCAGGTTCC 60 118920946 118920965 CTTTGATGTAGCTGCCACTG 59 NA Rattus norvegicus 81 Slc1a7 ENSRNOG00000011644 ENSRNOT00000016557,ENSRNOT00000090817,ENSRNOT00000072263 2 3 4 80 5 127613022 127613574 CACTATCAGCATTACAGCCAC 59 127613616 127613634 ACAATGACCATGGTGACGA 59 NA Rattus norvegicus 81 Tmem248 ENSRNOG00000000893 ENSRNOT00000058725,ENSRNOT00000086175 1 2 2 84 12 29935042 29936721 CATTGTCCCAGATGACGAC 58 29934976 29934995 CATCGTTATCACCATCACGA 58 NA Rattus norvegicus 81 Tpst1 ENSRNOG00000000900 ENSRNOT00000001200 2 1 3 80 12 30082916 30083002 CTGGTCTTACACCCTGAAGAG 60 30069154 30069175 GACTTGGTCTGTTGATCTTTCC 59 NA Rattus norvegicus 81 Slc39a7 ENSRNOG00000000465 ENSRNOT00000083873 1 1 2 102 20 3821843 3821861 TTCTCTGCTCCAGATCCTG 59 3821632 3821650 AGTATCGTGCGAATGAGGT 59 NA DesignNoJunction Rattus norvegicus 81 Bbip1 ENSRNOG00000047019 ENSRNOT00000074341 2 1 1 60 1 274650329 274650347 CGATGTTCCGAGAAGTCCT 59 274649614 274649635 ATTGTGGTTACATCTTCCACAG 59 NA DesignNoJunction Rattus norvegicus 81 Kif26a ENSRNOG00000013661 ENSRNOT00000018278,ENSRNOT00000086868 1 2 2 80 6 136749134 136749272 ATGTACCCTACAGGGACCA 59 136749315 136749334 CAATCATGGTGGTACAGCAG 59 NA Rattus norvegicus 81 Ddx3x ENSRNOG00000023383 ENSRNOT00000039551,ENSRNOT00000091448 2 2 2 80 X 10404719 10405261 TCCTAAGGAAATACAGATGCTG 58 10404660 10404679 GAAGTAGACCCAACTCTTCC 57 NA Rattus norvegicus 81 Sesn1 ENSRNOG00000000302 ENSRNOT00000089611,ENSRNOT00000065890 2 2 2 80 20 46748394 46748412 CTGCGACATTACGAATGGC 60 46748456 46751536 AAGGAGTCACTCACCAAGG 59 NA Rattus norvegicus 81 Gng7 ENSRNOG00000019857 ENSRNOT00000026893 2 1 1 102 7 11625403 11625421 TACTAACAACGTCGCCCAG 60 11626367 11626385 GCTCATCAGTTCTGACGAG 58 NA DesignNoJunction Rattus norvegicus 81 AABR07068455.1 ENSRNOG00000046623 ENSRNOT00000046409 3 1 2 110 9 105944571 105944591 GTTATAAGGTGCTCAACCGTC 59 105945337 105946149 TGATGCTGAACTCATTGTTCAG 59 NA Rattus norvegicus 81 Abhd14a ENSRNOG00000011936 ENSRNOT00000077514,ENSRNOT00000016056 2 2 3 90 8 115146162 115147177 AAGAGTTCCACAGAGGCTG 59 115146090 115146109 AGTAGGAACATGAGGAGCAG 59 NA InUTR Rattus norvegicus 81 Frs2 ENSRNOG00000005642 ENSRNOT00000007472,ENSRNOT00000080983 3 2 2 89 7 60135864 60135882 ATCCTTCTGTGGGAAGTGC 60 60134030 60135817 CATAAGTATGTACTTGTTCCTCAGC 60 NA Rattus norvegicus 81 Ube2h ENSRNOG00000048205 ENSRNOT00000074649 3 1 2 116 4 57539329 57540440 ACATTGATGGCGTTTCAGG 59 57521959 57521978 TAGGATAGGCCAGCAATTGG 60 NA Rattus norvegicus 81 RGD1307830 ENSRNOG00000002473 ENSRNOT00000059984 1 1 2 80 13 67600896 67600916 TCACGTTAACATTCACATCCC 59 67600169 67600856 CGTGTAAGTCCACTCTTTGTG 59 NA Rattus norvegicus 81 Camp ENSRNOG00000020733 ENSRNOT00000028130 2 1 1 61 8 117932180 117932198 CTCCTGGACCTGGATTCTG 59 117931633 117931654 CTCACATACTTGGGAGTATCTG 58 NA DesignNoJunction Rattus norvegicus 81 Jph4 ENSRNOG00000025589 ENSRNOT00000033722 3 1 1 60 15 33770382 33770402 TCTACAACCCATGTTAGAGGC 60 33770062 33770081 GTCAGAACCTCCAGAATCCT 59 NA DesignNoJunction Rattus norvegicus 81 Cask ENSRNOG00000060946 ENSRNOT00000082316 1 1 3 80 X 10130082 10134379 GAACTTCAGGAATGGTCTTGC 60 10134418 10134439 TTTCTTGCCAAACCAAGTACAG 60 NA Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000031189 2 1 5 82 8 6140680 6150141 AATGTCAGACCGTCAGAGC 60 6140318 6140336 ACTGCATTCTGAGTCCCTC 59 NA Rattus norvegicus 81 Fpgt ENSRNOG00000009548 ENSRNOT00000088561,ENSRNOT00000052396 1 2 3 82 2 261397313 261399390 TTAATTCACTCCGGTGGCT 59 261397249 261397267 TCACCAAGTGGTAAGGCTG 60 NA Rattus norvegicus 81 Atp5d ENSRNOG00000014625 ENSRNOT00000077301,ENSRNOT00000020670 3 2 2 178 7 12429862 12429880 AAAGTCCACTGACGTTTCC 58 12428690 12429720 CATCAAAGAACACCTGCGT 59 NA InUTR Rattus norvegicus 81 Cacna2d2 ENSRNOG00000015835 ENSRNOT00000021218,ENSRNOT00000081242 2 2 2 80 8 116273328 116273347 GTCGTAGTATGATTGACGGA 57 116273387 116273515 CATCTATGTACCTCTCATCCAG 57 NA Rattus norvegicus 81 Ddx50 ENSRNOG00000000396 ENSRNOT00000000446 1 1 2 80 20 32253453 32257632 CACTGTGGAACATTTGGCT 59 32253391 32253409 CCACTGTAGACCTGAAGGA 58 NA Rattus norvegicus 81 Agrn ENSRNOG00000020205 ENSRNOT00000045678 2 1 2 80 5 173620597 173620616 GTTGATGCTTAACTCCAGCC 59 173610411 173620556 CCAGGTTTGTCTTCTACACAG 59 NA Rattus norvegicus 81 Slc5a10 ENSRNOG00000002616 ENSRNOT00000032092 3 1 2 141 10 47950575 47950593 TCTTCTTCCTCACCTGTGC 59 47949961 47950221 GACTTGAAGCTCCCTCCTG 60 NA Rattus norvegicus 81 Spink14 ENSRNOG00000046686 ENSRNOT00000075498 1 1 1 60 1 229349169 229349189 TTCTCCATCATGCTTCATTCG 59 229349858 229349876 TAGGCCACCAAACTCTAGC 59 NA DesignNoJunction Rattus norvegicus 81 Zdhhc13 ENSRNOG00000014277 ENSRNOT00000019175,ENSRNOT00000081660 2 2 2 83 1 104119404 104119423 GATTCAGCAGCATCCATCTC 59 104119465 104121949 TATTCACACTCTGTCCCTTAGAG 59 NA Rattus norvegicus 81 RGD1308751 ENSRNOG00000039954 ENSRNOT00000061398 1 1 4 80 17 4258144 4258738 TAAGGGTGGCATGTACTATGAG 60 4258779 4258797 TCTTCACCATAGCCAACCA 59 NA Rattus norvegicus 81 Cpne2 ENSRNOG00000043286 ENSRNOT00000088196,ENSRNOT00000063791 2 2 2 80 19 10877888 10879117 GAAGCTGGATAAGAAGGACCT 59 10877828 10877846 ATCCACTTGCCGTCATCTC 60 NA Rattus norvegicus 81 Slc6a6 ENSRNOG00000009019 ENSRNOT00000012875,ENSRNOT00000086982 3 2 2 80 4 123656429 123656571 ACAAGTATAACTCGTACAGGGAC 60 123656371 123656389 AAATTGCGAAGCCAGACAC 60 NA Rattus norvegicus 81 Ttc39a ENSRNOG00000009519 ENSRNOT00000013459 1 1 2 80 5 129052073 129052348 TACGATTGTGAAGGGTCTCC 59 129052391 129052409 GGTAAGGAAGAGGTCCAGG 59 NA Rattus norvegicus 81 Ttc39a ENSRNOG00000009519 ENSRNOT00000013459 2 1 2 81 5 129052074 129052348 ACGATTGTGAAGGGTCTCC 59 129052392 129052411 TTGGTAAGGAAGAGGTCCAG 59 NA Rattus norvegicus 81 Naalad2 ENSRNOG00000005955 ENSRNOT00000007855 1 1 2 80 8 17485240 17485514 GGTCTACAGAGCCTGACAG 59 17485178 17485196 CAGTCGTAGGGTCAATCCC 60 NA Rattus norvegicus 81 Sfswap ENSRNOG00000000931 ENSRNOT00000077977,ENSRNOT00000001235 3 2 2 81 12 30795658 30795676 GAAGATGGGAGTTACCTGC 58 30794516 30795613 CCTTCAAGGGCTTCATCAG 58 NA Rattus norvegicus 81 Laptm4a ENSRNOG00000006865 ENSRNOT00000085797,ENSRNOT00000091651 3 2 3 132 6 34029245 34053191 AGGTGGTCAACCTATTGATGG 60 34053283 34056189 CAGGCATTATCAGCCATTCTC 59 NA Rattus norvegicus 81 RGD1307947 ENSRNOG00000006973 ENSRNOT00000036141,ENSRNOT00000091319,ENSRNOT00000083347 2 3 3 80 7 40306427 40308077 ACGGCTGTTTAATTAAGGTCC 59 40306367 40306387 CTGGTTTGGAGTTCATGTAGG 59 NA Rattus norvegicus 81 Nalcn ENSRNOG00000004752 ENSRNOT00000057404,ENSRNOT00000006624 2 2 3 87 15 109755736 109755754 TGACATAACCCAGCATCCG 60 109755582 109755688 TACAGACCACTTGACAGATAGC 60 NA Rattus norvegicus 81 Gstcd ENSRNOG00000011669 ENSRNOT00000086303,ENSRNOT00000037154 2 2 2 80 2 238126463 238126483 GAATTGTGGATTTCTGCAGTG 58 238124640 238126268 TTAATGTGACCTGGCACAG 58 NA Rattus norvegicus 81 Tmprss9 ENSRNOG00000032429 ENSRNOT00000066037 2 1 2 99 7 11695641 11695788 AGTTACAGAGATGGCAATTCCA 60 11695563 11695581 AGATGTCTGCTTCCTGGTC 59 NA Rattus norvegicus 81 Itgb5 ENSRNOG00000001795 ENSRNOT00000049974 3 1 2 98 11 70140170 70140189 TCTGACGTCATCCAGATGAC 59 70130713 70130732 ATAGTCCTCCACCTGTCGT 60 NA Rattus norvegicus 81 Bean1 ENSRNOG00000013301 ENSRNOT00000064781 2 1 2 91 19 983259 983549 ATGTGGGAACAGTGAGTGG 60 983184 983204 GTAATCCTTGGAGCAGAACAG 59 NA Rattus norvegicus 81 Cast ENSRNOG00000010286 ENSRNOT00000062055,ENSRNOT00000062054,ENSRNOT00000062052 1 3 5 80 2 1494398 1494416 AAGGCAGGAGAAATGTGGT 59 1493434 1494357 TTTCCATCTTTATCCTTGGCTG 59 NA Rattus norvegicus 81 Fam3b ENSRNOG00000001962 ENSRNOT00000002683 2 1 2 89 11 37928025 37928044 GAGCTCCCTTCAGAATGGA 59 37923193 37923211 CGATCTGGATCTCTGCTGG 60 NA Rattus norvegicus 81 Evl ENSRNOG00000014476 ENSRNOT00000080230,ENSRNOT00000019583 2 2 2 82 6 132551491 132551509 GCCGGATCAACATCTACCA 60 132551554 132555560 GATCACAACCTGCTGATCCT 60 NA Rattus norvegicus 81 Flnc ENSRNOG00000007281 ENSRNOT00000027237,ENSRNOT00000088149 3 2 2 80 4 56732307 56732325 AGTATCCGTGCTCCTTCAG 59 56732367 56732464 GGTAAAGGAGATCCCAATGTG 59 NA Rattus norvegicus 81 Syt7 ENSRNOG00000026432 ENSRNOT00000035576,ENSRNOT00000036283 3 2 8 137 1 226463361 226468033 GAAGAAAGCCATCAATGGCA 59 226468133 226468151 CTTCTCAAGGCGTCCTCTC 60 NA Rattus norvegicus 81 LOC103690024 ENSRNOG00000049203 ENSRNOT00000071625 3 1 2 82 4 156992539 156993280 TAACTCTGAGGGCACATCG 59 156992475 156992495 CAAATTCCACCTGAAGAGCAG 60 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000082775,ENSRNOT00000087711,ENSRNOT00000068238,ENSRNOT00000064344,ENSRNOT00000044638,ENSRNOT00000007218 1 6 7 80 3 48276243 48276264 GAACAAAGTATGCTAGCCATGG 60 48276305 48279006 CACAGATGGGTCGTCTCTG 60 NA Rattus norvegicus 81 Egfl6 ENSRNOG00000004275 ENSRNOT00000068337 3 1 2 81 X 29476592 29476611 GCAGAGGATTTGGATCTGGT 60 29476649 29485398 CCATATAGTAACCCACATCTTTGTG 60 NA Rattus norvegicus 81 Exoc2 ENSRNOG00000060266 ENSRNOT00000092101,ENSRNOT00000090706,ENSRNOT00000077110 1 3 4 80 17 34832492 34832510 GTCTCTGAAGAGCTGAGCC 60 34832554 34835974 GATTTCAAGTCTGGCCTGC 59 NA Rattus norvegicus 81 Stk10 ENSRNOG00000004217 ENSRNOT00000047011 1 1 2 80 10 17478589 17478610 ACTTTCTGAAGATAGCCTTGGA 59 17478651 17484906 TACTGACGAAGGGATGCTG 59 NA Rattus norvegicus 81 LOC100911154 ENSRNOG00000042884 ENSRNOT00000056172 3 1 3 89 2 200713564 200713663 TACTACATCTCAGATGACACCC 59 200713496 200713514 ACTGGAATCAAGGTGGAGG 59 NA Rattus norvegicus 81 Atg4d ENSRNOG00000047625 ENSRNOT00000083194 1 1 2 80 8 22292923 22292941 GCGATGCTACCATTTCGAG 59 22293066 22300244 AGAGCAGAAAGTCATAGTCGAG 60 NA Rattus norvegicus 81 Itgam ENSRNOG00000019728 ENSRNOT00000085336 3 1 3 80 1 199597818 199599997 AGTTTGGTGGATCTCGACTC 60 199600039 199600058 CACAGTCATACAACCGTCCT 60 NA Rattus norvegicus 81 Park7 ENSRNOG00000018289 ENSRNOT00000024711,ENSRNOT00000087402 2 2 3 82 5 167992675 167992693 TCACGAAGTAGGCTTTGGA 59 167988718 167992629 AGTAGCTGTAGTGACTGCC 59 NA Rattus norvegicus 81 Apex1 ENSRNOG00000009663 ENSRNOT00000013176,ENSRNOT00000087958 3 2 2 80 15 27850644 27850662 TGCCACACTCAAGATATGC 58 27850706 27851137 TCCTTTACCCAATCCAAGC 57 NA Rattus norvegicus 81 Trappc11 ENSRNOG00000022482 ENSRNOT00000079466 2 1 2 80 16 47917209 47919991 GAAATACACCACAGGGTCG 58 47920034 47920053 TAAGAACACCAAGAGCTGGT 59 NA Rattus norvegicus 81 Ctnna3 ENSRNOG00000000373 ENSRNOT00000057950,ENSRNOT00000084660 3 2 2 80 20 25064981 25113501 CATCGTGTCAGCTTTGGAC 59 25064919 25064938 TTCACTGTTTGCACTACAGC 59 NA Rattus norvegicus 81 Mapk11 ENSRNOG00000006984 ENSRNOT00000009325,ENSRNOT00000079777 1 2 2 80 7 130124241 130124452 GGAAATGACTACATCGACCA 57 130124180 130124199 GGATATCTTTGCCAGAACCT 57 NA Rattus norvegicus 81 Galk2 ENSRNOG00000009289 ENSRNOT00000083356,ENSRNOT00000012447,ENSRNOT00000079023 3 3 3 80 3 118160732 118175176 GAGTGAACATAATAGGTGAGCA 58 118175216 118175235 CTATTAGCATGTCCTGCTCC 58 NA Rattus norvegicus 81 Tcp1 ENSRNOG00000014160 ENSRNOT00000019531 3 1 2 82 1 48026712 48026845 GACCAGTATGGGATCTCGG 59 48026648 48026667 TCACTGCCAGTGTATTAGGA 58 NA Rattus norvegicus 81 Slc7a3 ENSRNOG00000004133 ENSRNOT00000076910,ENSRNOT00000076336 3 2 3 81 X 70974259 70974277 GTCCAGTCAACTCCATCCC 60 70973767 70974217 ACAGTTAGTAGTACAGCAAGCA 60 NA Rattus norvegicus 81 Lin7a ENSRNOG00000004527 ENSRNOT00000006083,ENSRNOT00000072526 1 2 2 107 7 49429648 49531755 GGACAGAGATGTTGCAAGAG 59 49531825 49531843 AACTCACTCTGAAGCACCT 59 NA Rattus norvegicus 81 Slc5a9 ENSRNOG00000042950 ENSRNOT00000064569,ENSRNOT00000080242 3 2 2 81 5 131847921 131847940 CCCTGTTTGCCATAGATGTG 59 131846074 131847877 ACAAACAACCTGCCTACCA 60 NA Rattus norvegicus 81 Guca1b ENSRNOG00000015623 ENSRNOT00000020950 1 1 2 80 9 15626013 15626033 TTCAAGATCTACGACAAGGAC 58 15624085 15625971 CAGCTTGTAGATTGCCTCC 58 NA Rattus norvegicus 81 Prom1 ENSRNOG00000003098 ENSRNOT00000084322 3 1 5 94 14 71629415 71629433 ACCATGCTCTTACTTCCGG 60 71629486 71631483 GCTGATGGTTCATCATATACATCC 60 NA Rattus norvegicus 81 Cfh ENSRNOG00000030715 ENSRNOT00000060111,ENSRNOT00000017749 2 2 3 80 13 57008731 57008750 ATTTCTACTGAAGGGACCCA 58 57008585 57008691 CTCTCATACTCAACGCATATCG 59 NA Rattus norvegicus 81 Mreg ENSRNOG00000015774 ENSRNOT00000021152 1 1 2 113 9 79523411 79544937 CTGGTCAGTGGTAACAATCC 58 79523317 79523335 GTCATCATCTGCCTCTGTG 58 NA Rattus norvegicus 81 Prmt3 ENSRNOG00000014829 ENSRNOT00000020853,ENSRNOT00000079655 3 2 2 82 1 105164874 105164892 CCACAAAGACAGCCATGTG 60 105188625 105188837 GAATACAACCCTGTTGTGACAG 60 NA Rattus norvegicus 81 Shq1 ENSRNOG00000005433 ENSRNOT00000089177,ENSRNOT00000057758 2 2 2 80 4 133120716 133121612 AAGAAATAGGTGCTTCCGG 58 133120654 133120672 GAGTCTGCTCAATTTCCCA 58 NA Rattus norvegicus 81 Csnk1e ENSRNOG00000013076 ENSRNOT00000088424,ENSRNOT00000018126 1 2 3 100 7 120654790 120654906 GCAAGCTGGCAATACTTCTC 60 120654709 120654727 AGGATGAGACATTGGCAGG 60 NA Rattus norvegicus 81 Eya1 ENSRNOG00000007590 ENSRNOT00000064946,ENSRNOT00000082717 3 2 2 80 5 4425411 4425430 CAATGCCACTTACCAACTCC 59 4425472 4447456 GTACTGTACTCTGCTGTGGG 60 NA Rattus norvegicus 81 Zfyve27 ENSRNOG00000014903 ENSRNOT00000040740 1 1 2 80 1 261428423 261429863 AGATGCAATAGAGGAGACCC 59 261430050 261430068 ATGGTCAGCTCATCCTCTG 59 NA Rattus norvegicus 81 Tepp ENSRNOG00000013465 ENSRNOT00000082822,ENSRNOT00000018082 2 2 2 106 19 10131817 10136921 CACCAAAGATGATTTCAACGAG 58 10131506 10131524 ACTTGTGACAGAGCTTCTG 57 NA Rattus norvegicus 81 Rn60_10_0701.2 ENSRNOG00000048053 ENSRNOT00000075851 3 1 2 60 10 70399804 70399823 CTTTGGGATTTGAGCTACGA 58 70399846 70399864 TGGCAAGGATCAGTAACGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sbno1 ENSRNOG00000001064 ENSRNOT00000057902,ENSRNOT00000088787 3 2 3 80 12 37627111 37627130 ACATGAGCTCTGGTGATGAC 60 37627172 37628218 TTAACCATGGATCGTCCTCG 60 NA Rattus norvegicus 81 Eea1 ENSRNOG00000021681 ENSRNOT00000087297,ENSRNOT00000029764 2 2 2 80 7 37141469 37141490 AGTGAGAAGCTGATGGATAAGG 60 37141530 37142621 TTCCTTCAACTGCTCTTCCA 59 NA Rattus norvegicus 81 Atp8b4 ENSRNOG00000031598 ENSRNOT00000086357 2 1 2 80 3 118621581 118621601 TACAAGAACTTTGCGTTCACC 60 118613792 118621539 CTGGTCGTAGACAGTCTGG 59 NA Rattus norvegicus 81 Ybx3 ENSRNOG00000005480 ENSRNOT00000007427,ENSRNOT00000068185 2 2 2 80 4 165622664 165625303 GTTTGTACACCAGACTGCC 59 165622602 165622623 AACTCTACAGTTTCTCCATCCC 60 NA Rattus norvegicus 81 Ccdc39 ENSRNOG00000011440 ENSRNOT00000065469 1 1 2 80 2 120313407 120316295 GGATGGATGGCCAATTAGC 59 120313345 120313366 TAATTCGATCTTCATAGTCGCG 59 NA Rattus norvegicus 81 Ccdc7 ENSRNOG00000050191 ENSRNOT00000091209 1 1 3 103 19 62146838 62146857 AGTTCACAGTGATGATGGAG 57 62142133 62146774 CATCATCACCAACAGATACGT 58 NA Rattus norvegicus 81 Cdc14b ENSRNOG00000018999 ENSRNOT00000033017 3 1 2 80 17 1797403 1797422 AGCAGGACGACCTATACCT 60 1770035 1770054 CGTTTGATGCACTCTTTGGT 60 NA Rattus norvegicus 81 Armc9 ENSRNOG00000025418 ENSRNOT00000066934 2 1 2 81 9 93239043 93239062 GAATCCGATGATGACGAGGA 60 93265896 93265915 AGAGTTCTCCAAGCTGGTC 59 NA Rattus norvegicus 81 Prkar2b ENSRNOG00000009079 ENSRNOT00000079719 1 1 3 102 6 51297217 51316868 GTGCTGACTGTATGTGCAG 59 51291145 51291166 GCAATCTGTTTCTTTGATCGTC 59 NA Rattus norvegicus 81 Ypel1 ENSRNOG00000001858 ENSRNOT00000002539 2 1 2 80 11 88180474 88180492 TCACAGAACTTACAGCTGC 58 88177150 88180430 CTTCCCTGAAAGGACTTGG 58 NA Rattus norvegicus 81 Arhgef15 ENSRNOG00000004566 ENSRNOT00000067528 2 1 2 80 10 55533807 55536249 CTTTCACAAAGTCAAGGTTGG 58 55533747 55533766 ATGTTCTCCTGTGACTTCAC 58 NA Rattus norvegicus 81 Tmem156 ENSRNOG00000026518 ENSRNOT00000032273 1 1 2 80 14 44908623 44908645 GTCTTCATCTGTTCTCTTCAGAG 59 44908684 44917728 CAAGGATAGCCTGGAATGAC 58 NA Rattus norvegicus 81 Ano1 ENSRNOG00000020865 ENSRNOT00000028329 3 1 2 82 1 217789477 217789496 GAAACGGAAGCAGATGAGAC 59 217786776 217789433 TGGGATGATCACAGCTACTC 59 NA Rattus norvegicus 81 Fgd3 ENSRNOG00000016225 ENSRNOT00000089310 2 1 2 90 17 15782620 15782640 GCACATTCATCATAACAGGAC 58 15784433 15785054 GCCTGAATGACCTGAATCC 58 NA Rattus norvegicus 81 Lama2 ENSRNOG00000011134 ENSRNOT00000079138,ENSRNOT00000014917 3 2 2 80 1 19089986 19092968 TCACTGGAGAATGTTTACACAG 58 19093009 19093027 CGTTCCGACATCAATGGAC 59 NA Rattus norvegicus 81 Akr1d1 ENSRNOG00000013004 ENSRNOT00000083672 3 1 2 93 4 65113052 65113176 ATCATCAAAGTACCCGGCA 59 65113233 65113251 CATTTCGGTAGACGTAGGC 58 NA Rattus norvegicus 81 Adgrg1 ENSRNOG00000014963 ENSRNOT00000088048,ENSRNOT00000081223,ENSRNOT00000020921 1 3 3 80 19 10432512 10434236 CATCTTCTCCTTCCATAATGCC 59 10432453 10432471 TGCAGTTCCTTCTTGAGGT 59 NA Rattus norvegicus 81 Tjap1 ENSRNOG00000018980 ENSRNOT00000091113 1 1 2 105 9 17107088 17107106 GAACAGCTACACAGCATCC 59 17107413 17108135 CTCAGCCTTCTTGATTGCA 58 NA Rattus norvegicus 81 Rcvrn ENSRNOG00000003633 ENSRNOT00000004880 2 1 1 60 10 54246608 54246627 ATGAAGTGTTGGAGATCGTC 58 54250733 54250751 TTCTTCACATCCTCAGGCT 58 NA DesignNoJunction Rattus norvegicus 81 Kncn ENSRNOG00000037618 ENSRNOT00000057061 1 1 2 80 5 134738126 134738144 CTCCTCATCTTCGCCTACC 59 134738186 134739022 GATTCTCAGGTTTCCTATGGC 59 NA Rattus norvegicus 81 Sept5 ENSRNOG00000029912 ENSRNOT00000051680,ENSRNOT00000041168 1 2 2 80 11 86518398 86518500 GCTGAAGGACAGGATACGA 59 86518541 86518562 TCTTCATCTGAGTCACATTCTG 58 NA Rattus norvegicus 81 Tpm2 ENSRNOG00000016731 ENSRNOT00000049000 2 1 2 80 5 59016765 59020275 CCTGGAAGAGACTTTGGCT 59 59016703 59016722 TTGAGTTCCAGAAGGGTCTG 59 NA Rattus norvegicus 81 Slc6a7 ENSRNOG00000018644 ENSRNOT00000091220 1 1 4 111 18 56307107 56307125 ACTGATGGTACACATGCGA 59 56307011 56307032 TGTCTGGTCCATCATGGAC 59 NA Rattus norvegicus 81 Gbe1 ENSRNOG00000051232 ENSRNOT00000076695 1 1 2 113 11 7210335 7210353 TCCGAAGCTCAACTGAAGG 60 7210429 7265839 CTTCTTATACCTGCGCTGGA 60 NA Rattus norvegicus 81 Katnb1 ENSRNOG00000014626 ENSRNOT00000019770,ENSRNOT00000087100 3 2 2 80 19 10341168 10341413 ACAGGAGATATCAAGACATCGG 60 10341109 10341130 GACAATATTCAGAAGGTCCACG 59 NA Rattus norvegicus 81 Katnb1 ENSRNOG00000014626 ENSRNOT00000019770 2 1 2 106 19 10340776 10340794 CTCCCTCAAGCTGATCCTG 60 10340429 10340706 ACTTATGCAGCCTCTCCTC 59 NA Rattus norvegicus 81 Rnf32 ENSRNOG00000005691 ENSRNOT00000045086,ENSRNOT00000007646 3 2 2 80 4 2056438 2060043 TAACTTTAGCCCAGAAACTGG 58 2060085 2060103 TCTGCTTCACTTTCTCCCA 59 NA Rattus norvegicus 81 Scube2 ENSRNOG00000013123 ENSRNOT00000052377 1 1 2 175 1 174461933 174461951 CATCCAGGGTACAAGCTCC 60 174461111 174461375 TAAGCCTCTTGCAGTCCTG 59 NA Rattus norvegicus 81 Usp4 ENSRNOG00000054863 ENSRNOT00000085609 2 1 2 102 8 117140680 117144408 CCCTGCAATCAAATGGAGC 60 117144474 117144492 TTTCCCAGGTTTCCGAGTC 60 NA Rattus norvegicus 81 Rbm47 ENSRNOG00000002408 ENSRNOT00000003327 1 1 1 60 14 43834071 43834089 ATTCCTGCGGTATCCACAC 60 43837015 43837036 CAGTGTACACAGGAGTTATTGG 59 NA DesignNoJunction Rattus norvegicus 81 Rgs6 ENSRNOG00000008082 ENSRNOT00000086136,ENSRNOT00000058181 2 2 2 80 6 106539142 106548952 ATAGAGATGAGCAAAGAGCCC 60 106548992 106549012 CACCTGGTCCTTCAGTATCTC 60 NA Rattus norvegicus 81 Ncf2 ENSRNOG00000028016 ENSRNOT00000090174 1 1 4 166 13 70243539 70245910 GAAGGACTATCTGTTCCAGGT 59 70249705 70249723 GCACAAAGCCAAACAACAC 59 NA Rattus norvegicus 81 Trappc9 ENSRNOG00000027569 ENSRNOT00000067327 3 1 2 80 7 113714389 113714409 TTACCTTGGAGAACATTGGAC 58 113703735 113714348 ACAACTTCTCCTTAGTGGTG 57 NA Rattus norvegicus 81 Ighmbp2 ENSRNOG00000013456 ENSRNOT00000086385 3 1 2 136 1 218512745 218512763 GATCTGAAGGCACTTCACC 58 218509665 218512645 CACAGCCATGGATCTTTCG 59 NA Rattus norvegicus 81 Rnf144b ENSRNOG00000016123 ENSRNOT00000082733,ENSRNOT00000036876 3 2 2 80 17 17828342 17836683 TAAAGTTTGAACGAGAGGTCC 58 17828282 17828300 TGATATGGCACACTGTCTG 57 NA Rattus norvegicus 81 Tpd52l1 ENSRNOG00000021478 ENSRNOT00000078841 1 1 2 80 1 28564233 28564253 ACAGCAGCTTTCAGTAATGTG 59 28567839 28569649 GATGGAGTACCCAATAGAATGAG 58 NA Rattus norvegicus 81 Ppfia1 ENSRNOG00000020857 ENSRNOT00000039677 1 1 2 130 1 217648636 217648655 GTTCAGACCAAAGGACATCC 59 217645492 217648543 GTGGGTAAACGTCCATCTG 58 NA Rattus norvegicus 81 Wbp11 ENSRNOG00000049593 ENSRNOT00000082312,ENSRNOT00000072528 2 2 2 88 4 170779901 170780880 TTTGATGCCGTCAAGAACG 59 170779831 170779850 TGGATCAGGATGTTGGAAGG 60 NA Rattus norvegicus 81 Magi2 ENSRNOG00000013962 ENSRNOT00000078799 3 1 2 80 4 11161058 11161079 AGAGCCATTTATGAAAGTAGGC 59 11146265 11152026 ATAATCTGGACTGTTGCCAG 58 NA Rattus norvegicus 81 Klra2 ENSRNOG00000031515 ENSRNOT00000035522 2 1 2 83 4 165457994 165458013 ATAAGTCTCCAGGGTTGCAG 60 165457314 165457948 ATTCGGAGTGAGCTCTGTG 60 NA Rattus norvegicus 81 Mctp2 ENSRNOG00000009932 ENSRNOT00000046645 1 1 2 80 1 133431539 133431557 GTTTGATGAGGACGGAGAC 58 133411266 133431499 GGTTGTCCATCTCTAATAGACAG 58 NA Rattus norvegicus 81 Iqca1 ENSRNOG00000019592 ENSRNOT00000026491 3 1 2 80 9 97218477 97225640 TCATAACTGGGACCATCGA 58 97218415 97218434 AGAGTTTGACCTTCAGAGCT 59 NA Rattus norvegicus 81 Iqca1 ENSRNOG00000019592 ENSRNOT00000056724 1 1 2 80 9 97190491 97190510 GTCCTTCTGCAGAGTTTACC 58 97186463 97190448 GGTTTCAACCACATTCCGT 59 NA Rattus norvegicus 81 Scap ENSRNOG00000020853 ENSRNOT00000028295,ENSRNOT00000090238 1 2 2 80 8 118627833 118627962 CTGTGTACATTGATCAGACCA 58 118628004 118628022 TGCCTGTTAGTACATCCCA 58 NA Rattus norvegicus 81 Arl2bp ENSRNOG00000016991 ENSRNOT00000023455,ENSRNOT00000079523 3 2 2 80 19 10756663 10756682 GTACATTGAAGAGCAGTTGC 58 10756077 10756620 TCTTTATGGTGCTGCAGTG 58 NA Rattus norvegicus 81 Pla2g6 ENSRNOG00000012295 ENSRNOT00000016827,ENSRNOT00000090565 1 2 4 81 7 120533013 120536152 GATCAGCAAGCAGCTTCAG 59 120532950 120532968 CTCATCCCTCATGGAGCTC 59 NA Rattus norvegicus 81 Pla2g6 ENSRNOG00000012295 ENSRNOT00000016827,ENSRNOT00000090565 3 2 4 83 7 120533013 120536152 GATCAGCAAGCAGCTTCAG 59 120532948 120532966 TTCTCATCCCTCATGGAGC 59 NA Rattus norvegicus 81 Rgl1 ENSRNOG00000002347 ENSRNOT00000083995 1 1 2 80 13 69984266 69984290 GCATCTTCTTGTCAACATATAGAGG 60 69962602 69984230 TCAAGTTTCCATACCTGTCCA 59 NA Rattus norvegicus 81 Oas1a ENSRNOG00000001369 ENSRNOT00000038426,ENSRNOT00000048450 1 2 3 80 12 41202607 41205272 TGTCCTAGGTCATGTTAGCC 59 41205315 41205333 CCCAGGGAGATACATTCGG 59 NA Rattus norvegicus 81 Mbd3l1 ENSRNOG00000006363 ENSRNOT00000008341 1 1 1 75 8 18431101 18431121 ATATTGATGGCAGTCTTCCAG 58 18433988 18434006 CTCTGTGAAGTCTTGCCCA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Sirpa ENSRNOG00000004763 ENSRNOT00000091935 2 1 2 81 3 122148170 122150133 CAGGTACAGTCTTTGATCCAG 58 122150176 122150194 GCTTCTTCTCTTTGGGCAG 59 NA Rattus norvegicus 81 Zeb2 ENSRNOG00000004677 ENSRNOT00000080382 2 1 3 84 3 29868403 29868424 CATGTGACTTATGTGACAAGAC 58 29866883 29868358 GGTGTGCCTATTGTAGCTG 58 NA Rattus norvegicus 81 Cbx5 ENSRNOG00000036841 ENSRNOT00000089024,ENSRNOT00000055289 1 2 2 82 7 144826212 144826232 AGGAAACAAGAGGAAATCCAG 58 144821384 144826170 CGATATCATTGCTTTGCTCTC 58 NA Rattus norvegicus 81 Mef2a ENSRNOG00000047756 ENSRNOT00000089723 1 1 4 80 1 128217311 128226057 ATCTAGAGCTGAATGCCCA 58 128217249 128217267 GAGTTGTCACAGACACCAC 58 NA Rattus norvegicus 81 Trim37 ENSRNOG00000006248 ENSRNOT00000091163 2 1 3 81 10 74512016 74517379 TTACATAAGAAACCGCTCCC 58 74517422 74517441 AATGATGCCATGTGTCAGAG 58 NA Rattus norvegicus 81 St18 ENSRNOG00000006200 ENSRNOT00000091649,ENSRNOT00000059625 1 2 3 80 5 12526928 12526948 GATAAAGCGTTGCATACTCTC 57 12504496 12524950 ATCATATGCAACCCTGAGC 58 NA Rattus norvegicus 81 Snrpb ENSRNOG00000006961 ENSRNOT00000049857 2 1 2 95 3 122699772 122701347 GAAGATCAAGCCAAAGAACTCC 60 122699698 122699717 GTCATGGAGACCAGGTTCTC 60 NA Rattus norvegicus 81 Gcnt2 ENSRNOG00000023778 ENSRNOT00000078010,ENSRNOT00000035448 2 2 3 80 17 21639929 21676091 AATAGGATTCCAGGAGTCCC 58 21639868 21639888 CATATCCTTCCACTTCACAGC 59 NA Rattus norvegicus 81 Gcnt2 ENSRNOG00000023778 ENSRNOT00000060335 2 1 3 80 17 21639929 21738502 AATAGGATTCCTGGAGTCCC 58 21639868 21639888 CATATCCTTCCACTTCACAGC 59 NA Rattus norvegicus 81 Rn60_8_0402.1 ENSRNOG00000030252 ENSRNOT00000041862 3 1 1 63 8 40160486 40160505 AGGAGTTGATCTCAGAAGGA 58 40160149 40160167 AACTTCTCTGTTTCCCAGG 57 NA DesignNoJunction Rattus norvegicus 81 Rbm3 ENSRNOG00000005387 ENSRNOT00000007367 1 1 2 114 X 15100049 15100706 TGAATGGAGAGTCCCTGGA 60 15100784 15100802 CTAGAGTAGCTGCGACCAC 60 NA Rattus norvegicus 81 Trdn ENSRNOG00000012609 ENSRNOT00000090388 2 1 2 82 1 25734959 25734981 GGCAAAGCAGAGAAACCTG 60 25720427 25720445 GCTGCCATCTTTGTCTCTG 59 NA Rattus norvegicus 81 Ppp2r2c ENSRNOG00000058202 ENSRNOT00000088469 1 1 2 80 14 78685198 78685222 TTCTTCTCCAAGATCATCTCCTC 60 78685139 78685157 GAGGTAATCCCTCGTGAGC 60 NA Rattus norvegicus 81 LOC100362980 ENSRNOG00000047506 ENSRNOT00000074499 2 1 1 122 7 122160443 122160461 CTGAACAAGCTTCAGGCTC 59 122162661 122162679 AGTGGTGCTGGAGTTAGAC 59 NA DesignNoJunction Rattus norvegicus 81 St8sia2 ENSRNOG00000012031 ENSRNOT00000016427,ENSRNOT00000079929 2 2 3 84 1 135365201 135365219 TGAAAGCCTTAAGCACAGC 59 135360435 135365155 AATTTGCTTCCTGATCCTCAG 58 NA Rattus norvegicus 81 Btaf1 ENSRNOG00000017938 ENSRNOT00000024465 1 1 2 91 1 255579498 255582142 TTCCTCTTAATACTCGATCGTC 57 255582194 255582212 ACTTCTCCAAGTTGCTGTG 58 NA Rattus norvegicus 81 Trpc6 ENSRNOG00000006324 ENSRNOT00000008905,ENSRNOT00000042553 1 2 2 80 8 6872678 6872700 GTCATGACAGCTTTAGAACTCAG 60 6872735 6880601 CTTCCTGTAGTCATTCTTGAACTC 59 NA Rattus norvegicus 81 Ngf ENSRNOG00000016571 ENSRNOT00000022200,ENSRNOT00000078376 3 2 2 86 2 204932429 204932447 AAGCTCACCTCAGTGTCTG 59 204932496 204938633 CATTACGCTATGCACCTCAG 59 NA Rattus norvegicus 81 Myc ENSRNOG00000004500 ENSRNOT00000006188 1 1 1 68 7 102586853 102586871 ATTTCCTTTGGGAGGTGGA 59 102588490 102588508 TCCTGTTAGCGAAGCTCAC 60 NA DesignNoJunction Rattus norvegicus 81 Tbc1d14 ENSRNOG00000006400 ENSRNOT00000085534,ENSRNOT00000058414,ENSRNOT00000077846 1 3 4 80 14 79355780 79355798 TGTTGCTGAGACTGAGGAG 59 79355840 79387347 CTAGCAAGCAAATTCCTTGTG 58 NA Rattus norvegicus 81 Tbc1d14 ENSRNOG00000006400 ENSRNOT00000085534,ENSRNOT00000058414,ENSRNOT00000077846 1 3 4 80 14 79355780 79355798 TGTTGCTGAGACTGAGGAG 59 79355840 79387347 CTAGCAAGCAAATTCCTTGTG 58 NA Rattus norvegicus 81 Hbb-b1 ENSRNOG00000047098 ENSRNOT00000087661,ENSRNOT00000019913,ENSRNOT00000089102 1 3 3 138 1 168946041 168965311 GAGAACTTCAGGCTCCTGG 60 168965413 168965431 AGTGGTACTTGTGAGCCAG 59 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000084571 2 1 6 80 1 41798815 41798834 CCACATGAGTATCGTTGAGG 58 41796343 41798774 GTGCTTTCTGCATTAGATCTG 58 NA Rattus norvegicus 81 Incenp ENSRNOG00000032929 ENSRNOT00000043387 3 1 2 86 1 225932032 225937539 TGGACCCTAAGGAGAAGGA 59 225931964 225931982 CCTCTACCTTCTGTCTGCG 60 NA Rattus norvegicus 81 Trafd1 ENSRNOG00000001351 ENSRNOT00000033984,ENSRNOT00000091375 2 2 2 80 12 40702375 40703017 TTAAAGCAGCATGTGGAGAC 59 40703059 40703078 CTTGACAACAGAAAGCTCCA 59 NA Rattus norvegicus 81 Bco2 ENSRNOG00000038746 ENSRNOT00000059192 1 1 2 92 8 54975819 54978583 GGACCAAGAGGTTCTTGCT 60 54975745 54975763 AGAACATACTACCTGCGCC 60 NA Rattus norvegicus 81 Lrrc6 ENSRNOG00000005233 ENSRNOT00000086263,ENSRNOT00000007250 3 2 3 80 7 107130756 107141724 ACAAAGCCCAGAAGAAAGC 59 107130694 107130716 TACTATAGTAGACACATCAGGGC 59 NA Rattus norvegicus 81 Adamts20 ENSRNOG00000033397 ENSRNOT00000047388 3 1 3 81 7 135524187 135524207 CAAAGTTGTAGCCACTTACCG 60 135515988 135521710 TGAGGTAACTGGAGGTCCA 60 NA Rattus norvegicus 81 Neu1 ENSRNOG00000032942 ENSRNOT00000049344 2 1 6 165 20 4614410 4614524 CGAGTACCGAGTGAACCTG 60 4614653 4614671 GTACAGAACGAACAGCTGC 59 NA Rattus norvegicus 81 Dcun1d1 ENSRNOG00000012734 ENSRNOT00000068334,ENSRNOT00000080100 3 2 2 80 2 122625544 122628091 GCATGACAGAGTTAGGATGTG 59 122625484 122625505 CTGGTTCTTTCAATTCTTGCTC 58 NA Rattus norvegicus 81 Clip1 ENSRNOG00000001247 ENSRNOT00000088002 1 1 4 80 12 38447620 38450301 GGAGAGTCAGATTGATTTCCTC 58 38450340 38450360 ATCTCCACCTTCATCTTGAGG 59 NA Rattus norvegicus 81 Clip1 ENSRNOG00000001247 ENSRNOT00000078530 2 1 4 108 12 38446874 38446893 CCTGGAACTTCAACTCAAGG 59 38447618 38450292 AATCATTTGCTGACTCTCCTG 58 NA Rattus norvegicus 81 Clip1 ENSRNOG00000001247 ENSRNOT00000078530 3 1 4 108 12 38446875 38446894 CTGGAACTTCAACTCAAGGA 58 38447619 38450293 CAATCATTTGCTGACTCTCCT 58 NA Rattus norvegicus 81 Plekha1 ENSRNOG00000020497 ENSRNOT00000027836,ENSRNOT00000078244 1 2 2 80 1 201473251 201475859 GACTTTCTATGTGCAGGCTG 59 201475902 201475920 CGCTGTGCTACAATAGCTC 59 NA Rattus norvegicus 81 Dpp4 ENSRNOG00000030763 ENSRNOT00000085426,ENSRNOT00000077788 2 2 3 107 3 48295248 48295266 CTCAGATCTCCAAAGCCCT 59 48293661 48293683 AATAGATGTGCTGGTGGCT 59 NA Rattus norvegicus 81 Spon1 ENSRNOG00000058003 ENSRNOT00000092099 2 1 2 81 1 178926604 178926625 GAACAATGCAACATTGTACCTG 59 178926664 178927616 GGGTGTCATCTTCATCTTTCTC 59 NA Rattus norvegicus 81 Fars2 ENSRNOG00000016135 ENSRNOT00000080031 3 1 2 85 17 29140010 29140028 ATTGTCCGAACAGTCGGAG 60 29026163 29139965 GCCTCATACACCATAATCTTTGG 60 NA Rattus norvegicus 81 Akp3 ENSRNOG00000058652 ENSRNOT00000080897,ENSRNOT00000083137 2 2 2 80 9 94230655 94230796 GACGTATCTCATGGGCCTC 60 94230839 94230858 TTCAGAGATGGGTCCATCAG 59 NA Rattus norvegicus 81 Mgst2 ENSRNOG00000061857 ENSRNOT00000088846 2 1 1 69 2 140721883 140721902 CATCATATCGCTGTGGATGG 59 140726487 140726505 GTACAGGAGACCCAGACAG 59 NA DesignNoJunction Rattus norvegicus 81 Tceb1 ENSRNOG00000031730 ENSRNOT00000050236,ENSRNOT00000090313,ENSRNOT00000082813 2 3 3 123 5 2051972 2054772 ACACAATGGATGGAGAGGA 58 2054856 2054877 CCTGATGTTAATGCATGTTCTC 58 NA InUTR Rattus norvegicus 81 Fam81a ENSRNOG00000057501 ENSRNOT00000088628,ENSRNOT00000090747 1 2 2 80 8 76534221 76537244 ACGCAGAAGGACAGATCTC 59 76534159 76534179 GGGACATCTTCAGTTTAGTGC 59 NA Rattus norvegicus 81 Hnrnpm ENSRNOG00000007921 ENSRNOT00000036172,ENSRNOT00000011047 2 2 2 80 7 18530920 18533485 ACTTCCTCATGGACTTGGTG 60 18530859 18530877 CCTTTGTTCAGGTGGTTGG 59 NA Rattus norvegicus 81 Kif5c ENSRNOG00000004680 ENSRNOT00000006341 3 1 2 81 3 35173755 35175389 GAAGTCCCTTTCTTGCAGG 59 35175434 35175452 CTTTGCCCTCATCGATCAC 59 NA Rattus norvegicus 81 Rorb ENSRNOG00000013413 ENSRNOT00000018137 3 1 2 101 1 234364031 234377621 CTGCACAAATTGAAGTGATACC 58 234377683 234388938 TCCTGAAGAATCCCTTGCA 59 NA Rattus norvegicus 81 Thbs4 ENSRNOG00000012471 ENSRNOT00000083531,ENSRNOT00000065224 2 2 2 80 2 22348104 22349767 GGAAGATAGCAACAATGATGGA 59 22348045 22348065 ACATCAATGCGATCAATGACC 60 NA Rattus norvegicus 81 Cab39 ENSRNOG00000017297 ENSRNOT00000066440,ENSRNOT00000085332 2 2 2 81 9 92892618 92893238 TGTTCAAGGTGTTTGTGGC 59 92893283 92893301 TCGATGAGTTTGGTCTGGT 59 NA Rattus norvegicus 81 Cab39 ENSRNOG00000017297 ENSRNOT00000085332 3 1 2 87 9 92878367 92880330 CTCATTGACTTTGAGGGCA 58 92880378 92880399 CAACAGTAGGAGTTCTTGTACC 59 NA Rattus norvegicus 81 Mpp3 ENSRNOG00000033653 ENSRNOT00000084266,ENSRNOT00000028264 3 2 2 80 10 89949750 89949768 AATCCCAGGGATCCATCAC 59 89946490 89949706 GCATGAACACCTTGCTCTC 59 NA Rattus norvegicus 81 Npat ENSRNOG00000024934 ENSRNOT00000049076 1 1 2 96 8 58149245 58149266 CTCAGAAACAAGCCTATTACAG 57 58153902 58154021 CAGAAGCTTCAGTTCTTTGTG 58 NA Rattus norvegicus 81 Cit ENSRNOG00000001143 ENSRNOT00000057036 1 1 3 99 12 46353453 46353471 CAGCTTTCCTGACAAGCAG 59 46352198 46353392 AAGTAATTTAGCATCGGCCTC 59 NA Rattus norvegicus 81 Naca ENSRNOG00000002632 ENSRNOT00000003550,ENSRNOT00000085092,ENSRNOT00000075681 1 3 3 80 7 2470085 2470104 GGCTGTTTCCAACATTCAGG 60 2470147 2470295 CCCGTTTCATCAACCTCCT 60 NA Rattus norvegicus 81 Naca ENSRNOG00000002632 ENSRNOT00000003550,ENSRNOT00000085092,ENSRNOT00000075681 2 3 3 80 7 2470084 2470103 AGGCTGTTTCCAACATTCAG 59 2470146 2470294 CCGTTTCATCAACCTCCTC 58 NA Rattus norvegicus 81 Me1 ENSRNOG00000009715 ENSRNOT00000078977 2 1 2 88 8 94352240 94368766 TCTCAACAAGGACTTGGCT 59 94352170 94352188 TCTCCTGGTTGACAATGCA 59 NA Rattus norvegicus 81 Ap3b1 ENSRNOG00000010624 ENSRNOT00000089599 2 1 2 80 2 24210842 24224805 ACATACACAGGTTTGCAGC 59 24224849 24224867 CTGTGGAACCTTCCTTCAG 58 NA Rattus norvegicus 81 Slc7a2 ENSRNOG00000011016 ENSRNOT00000015127 1 1 2 80 16 54468876 54471424 CTTATCAACAAGTCTTCTGGGT 58 54468817 54468836 CTAAACAGTAAGCCATCCCG 59 NA Rattus norvegicus 81 Slco3a1 ENSRNOG00000032798 ENSRNOT00000082564 1 1 3 96 1 135800004 135800023 CTTCATCCTCTACACCACCA 59 135791506 135799945 ATACTCTGTGCTGGTGCTC 60 NA Rattus norvegicus 81 Hnrnpl ENSRNOG00000020235 ENSRNOT00000027425,ENSRNOT00000027494 1 2 3 80 1 86999142 86999162 TATCTGTAATCCTTGTGGCCC 60 86999202 86999873 GAATCAAACTCCACCATAGCC 59 NA Rattus norvegicus 81 Hnrnpl ENSRNOG00000020235 ENSRNOT00000027425,ENSRNOT00000027494 2 2 3 80 1 86999148 86999166 TAATCCTTGTGGCCCTGTC 59 86999209 86999879 TGCACAGAATCAAACTCCAC 59 NA Rattus norvegicus 81 Sat2 ENSRNOG00000011714 ENSRNOT00000079617,ENSRNOT00000015769 3 2 2 80 10 56228461 56228666 GATCAGTGAAGAAGCCCTG 58 56228709 56228728 GCTGGAATAATCTCTGCCAC 59 NA Rattus norvegicus 81 Oplah ENSRNOG00000011781 ENSRNOT00000080724,ENSRNOT00000077314,ENSRNOT00000016424 2 3 3 80 7 117362799 117362817 CGCTTACCTTACTCCCACC 60 117362656 117362757 ACTTGCACATTCTTTAGCTGG 59 NA Rattus norvegicus 81 Gnai2 ENSRNOG00000016592 ENSRNOT00000078720 3 1 2 84 8 116375786 116375808 CGGGAATATCAACTCAATGACTC 59 116371068 116373568 ACTGGAAAGGGATATAGTCACTC 59 NA Rattus norvegicus 81 Hnrnpf ENSRNOG00000014562 ENSRNOT00000083843,ENSRNOT00000019529,ENSRNOT00000091765 3 3 3 113 4 149972332 149972350 CTACAGAAGGCATCTGTGG 58 149977046 149977064 CATAGCCTTCACCTCCCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pcm1 ENSRNOG00000010155 ENSRNOT00000085435 2 1 2 81 16 54112013 54112031 AGCTCCTCAGAATGACAGG 59 54107337 54111968 AGGATCTCTGGCCTTTGAG 59 NA Rattus norvegicus 81 Flot2 ENSRNOG00000009681 ENSRNOT00000078757,ENSRNOT00000014104,ENSRNOT00000014118,ENSRNOT00000088721 3 4 4 135 10 65309839 65310757 AGGTGAAGATCATGACGGAG 59 65308297 65309741 GTCAGAGTCCCAAGGATGG 60 NA Rattus norvegicus 81 Lipc ENSRNOG00000060338 ENSRNOT00000085349 3 1 3 98 8 77295641 77295975 ATGACTCTCAGGTGGATGG 59 77295561 77295579 CCACTAATCCCACGTTCAC 58 NA Rattus norvegicus 81 Zfp799 ENSRNOG00000032552 ENSRNOT00000037708 1 1 2 110 7 15072934 15072952 ACACCTTGAGGAACCTGTG 60 15071206 15071226 AGAGTTTCTCCAACAACTGAC 58 NA DesignNoJunction Rattus norvegicus 81 Atg16l1 ENSRNOG00000017913 ENSRNOT00000024445 3 1 2 80 9 94897828 94898733 CTATCACTAATATCTTTGGGAGACG 59 94898771 94898789 CAGAAGCAGGATGAGTGTC 58 NA Rattus norvegicus 81 LOC691135 ENSRNOG00000015271 ENSRNOT00000084806 1 1 2 80 1 69616214 69618778 GTATGATCTGTACACAGGGCT 59 69618820 69618838 CATCCAGGAGCTTCCACTC 60 NA Rattus norvegicus 81 Ick ENSRNOG00000008691 ENSRNOT00000078159,ENSRNOT00000012257 1 2 2 80 8 85437470 85442944 GGGAGGTTAAGTCTTTAAAGAAGC 60 85442983 85443001 AGAGATGGTCGTTCTCCCT 60 NA Rattus norvegicus 81 Fto ENSRNOG00000011728 ENSRNOT00000086829 2 1 2 80 19 17024132 17045084 ATGTGTATAAACTGAGGCTCCT 59 17024073 17024094 GATAGAACTCGTCATCTTTGGG 59 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000080836,ENSRNOT00000082494 1 2 10 146 10 87136050 87137904 GGTGTCTCAGATTCATTCTTAAGG 59 87127513 87128300 TTGGTCCCAGACCTTTCTG 59 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000082605,ENSRNOT00000014230,ENSRNOT00000083233 2 5 10 83 10 87127013 87127032 AAAGTCGACAGAGACAGTCG 60 87122198 87126969 CATCATAATCGTCTGGGTCCT 60 NA Rattus norvegicus 81 Cacna1c ENSRNOG00000007090 ENSRNOT00000051846,ENSRNOT00000052017 2 2 3 84 4 150681953 150681974 GATGCATGGAATACATTTGACG 59 150674643 150681909 TATGTTCAGCTGGGTGTACC 60 NA Rattus norvegicus 81 Pigp ENSRNOG00000039850 ENSRNOT00000077233,ENSRNOT00000068743 2 2 2 80 11 34595205 34597630 TCTCAGTTTGGCTTCATACTC 58 34595145 34595166 CCAGTAAGTTAAGCCTAAGGAG 58 NA Rattus norvegicus 81 Lrrc45 ENSRNOG00000045926 ENSRNOT00000082551,ENSRNOT00000071487,ENSRNOT00000082209 3 3 3 102 10 109900902 109901401 AACTGAAAGTGGTCGGGAG 60 109901465 109901485 GAGATTTCTGCCTCTTTGAGC 59 NA Rattus norvegicus 81 Poc5 ENSRNOG00000018193 ENSRNOT00000087418,ENSRNOT00000061507 1 2 3 81 2 27003597 27003617 CTGATGAGGACAAGTGTTCAC 59 27003657 27006171 TCATATTCCTCCTGAAGGTCTG 59 NA Rattus norvegicus 81 Ube3d ENSRNOG00000010802 ENSRNOT00000014600,ENSRNOT00000080195 1 2 2 80 8 94008008 94069194 AGGAATAAAGAGCTTGCCAG 58 94007947 94007965 CTCCAAACAGGTTGTGGAG 58 NA Rattus norvegicus 81 Ube3d ENSRNOG00000010802 ENSRNOT00000014600 1 1 2 83 8 94007925 94007945 TGCTGTTGATACTATCGAGGA 59 93950379 94007880 AATGAGAGCACCAAAGCTG 59 NA Rattus norvegicus 81 Son ENSRNOG00000002021 ENSRNOT00000002769 3 1 2 80 11 31836193 31836212 CCACCTGAATTTCTCTTGGT 58 31836253 31836675 GCTTCCATTTCTCAATACCCT 58 NA Rattus norvegicus 81 AABR07051733.1 ENSRNOG00000057280 ENSRNOT00000074237 1 1 1 60 3 20457272 20457293 TGTCTACAGGGTTATAGTGCTC 59 20456947 20456965 TCCCTATTTCCCTCTCCCT 59 NA DesignNoJunction Rattus norvegicus 81 Opcml ENSRNOG00000023809 ENSRNOT00000090643 2 1 2 85 8 29525124 29714297 TGCAAAGTCAGGTGTACCA 59 29714345 29714364 TTGTCATTCCCAGCGTAGAG 60 NA Rattus norvegicus 81 Gyg1 ENSRNOG00000011146 ENSRNOT00000014837 3 1 2 81 2 104917501 104919777 TAATGATGGAACATGTCACAGG 59 104917441 104917459 GAGGACAAAGAAGGCTGTG 59 NA Rattus norvegicus 81 Ribc1 ENSRNOG00000003081 ENSRNOT00000091261,ENSRNOT00000004184 3 2 2 131 X 21702158 21702367 AGATATGGCTTATGGTGCCA 59 21702046 21702064 TTGAATTGCTGCCTTTGCT 59 NA Rattus norvegicus 81 Bag6 ENSRNOG00000000851 ENSRNOT00000001129 1 1 2 96 20 5133559 5133663 GTCTCTGGAGCTCTAGGTG 59 5133723 5133741 CAAGAACAGGCTGCATGAG 59 NA Rattus norvegicus 81 Acoxl ENSRNOG00000016179 ENSRNOT00000021740 1 1 2 100 3 120696924 120696942 GTATGGAACGAAGCTGCTG 59 120697006 120723884 AATTCAGCAACTGAGCCCT 60 NA Rattus norvegicus 81 Fhl1 ENSRNOG00000000875 ENSRNOT00000084594,ENSRNOT00000043820,ENSRNOT00000087274 3 3 5 81 X 159169769 159169789 CAGTATTACTGCGTGGATTGC 60 159169832 159171037 TACCAAACCCAGTGATGGG 59 NA Rattus norvegicus 81 Timm8b ENSRNOG00000009888 ENSRNOT00000013188 1 1 1 60 8 55037823 55037841 CAGAAGGCACAGTTCACTG 59 55038755 55038777 CACACTTATCCCAACATAGTTCC 59 NA DesignNoJunction Rattus norvegicus 81 Ilf3 ENSRNOG00000022741 ENSRNOT00000079230,ENSRNOT00000085320,ENSRNOT00000009354 3 3 3 80 8 22427973 22427991 GTCCTTGACCATCCATCTG 58 22428034 22429337 TTGACTGATAGCGTTTCTCC 58 NA Rattus norvegicus 81 Ilf3 ENSRNOG00000022741 ENSRNOT00000085320 1 1 3 80 8 22423610 22424313 CTAATGTACAGAGATGGCGT 57 22424353 22424374 GGTATACTGAAGAATGCTTTGC 58 NA Rattus norvegicus 81 Cyb561d2 ENSRNOG00000021887 ENSRNOT00000031739,ENSRNOT00000082320 3 2 2 81 8 116296768 116297217 TGGCTCCAGTCTATTCTCC 58 116296077 116296096 GAACATCAGGAGTGCTTCAG 59 NA Rattus norvegicus 81 Pou2f1 ENSRNOG00000003581 ENSRNOT00000087096 1 1 2 98 13 84084287 84084305 GTATTCGCCAATGCAGGAG 59 84083829 84084225 GAAGCAATCTGGGTTGCTG 60 NA Rattus norvegicus 81 Uba7 ENSRNOG00000029195 ENSRNOT00000084429 3 1 2 80 8 116758350 116758441 TCTGATAAAGTGCTTGAGGAC 58 116758482 116758501 GTTGGGATCAAATTGCAAGG 58 NA Rattus norvegicus 81 Magi3 ENSRNOG00000019885 ENSRNOT00000088095,ENSRNOT00000026952 2 2 2 80 2 206591828 206591848 TTCAGAAAGGATCGATTGACC 58 206575543 206591786 TTGTAGTGCATGGGATGGT 59 NA Rattus norvegicus 81 Il4i1 ENSRNOG00000020148 ENSRNOT00000027320,ENSRNOT00000056364 2 2 2 80 1 100832592 100832610 AAGGTGGTAGTGGTTGGTG 60 100832654 100833315 GATGGTGACCTTGTGTCCT 59 NA Rattus norvegicus 81 Tcf12 ENSRNOG00000057754 ENSRNOT00000081185,ENSRNOT00000084925,ENSRNOT00000087270 1 3 3 80 8 78379223 78385826 CCTTGGCATCTATTTATTCTCCTG 60 78379166 78379186 GTGAAGGAGATCCTACTGGTG 60 NA Rattus norvegicus 81 Csrp2bp ENSRNOG00000007160 ENSRNOT00000091529,ENSRNOT00000009437 2 2 2 80 3 138546101 138548403 CTGATTCAGACGTGCATGG 59 138548447 138548465 AAACTTCTGGTACAGCAGC 58 NA Rattus norvegicus 81 Chst11 ENSRNOG00000008885 ENSRNOT00000087536 2 1 2 169 7 26690106 26690124 TGCTTAGTCTTGCGTTCGA 60 26646690 26646708 GAGTTCGTGGTCCTCATCC 60 NA DesignNoJunction Rattus norvegicus 81 Zfp444 ENSRNOG00000015517 ENSRNOT00000090327 3 1 2 86 1 71389669 71400184 GTATTCCTGAGGTGCTGGT 59 71389601 71389619 AACCGACAGATTCTCCTGC 60 NA InUTR Rattus norvegicus 81 Acacb ENSRNOG00000000658 ENSRNOT00000067975 2 1 4 83 12 48167554 48168612 CTGATCCAGAGGCAAGAGG 60 48167350 48167370 CTCCACGTTCAGATATCTCCT 59 NA Rattus norvegicus 81 Nsa2 ENSRNOG00000016530 ENSRNOT00000081472 2 1 2 80 2 27943423 27943447 GCTACCTTTGCCTATACTCG 58 27943362 27943380 GTCCCTTTGGTGATCACAC 59 NA Rattus norvegicus 81 Pdzd7 ENSRNOG00000032946 ENSRNOT00000043623 2 1 1 80 1 264785986 264786353 GGCTAGATAGATTGAGCAATGG 59 264785927 264785946 AGGCATAAGAGGAGACACTG 59 NA Rattus norvegicus 81 Ddx39a ENSRNOG00000004373 ENSRNOT00000045974,ENSRNOT00000090312 2 2 2 80 19 24853413 24853431 TGTATGATGTTCAGCGCCA 60 24853473 24853869 AAACACCTCCATAGGATCCTG 59 NA Rattus norvegicus 81 Zzef1 ENSRNOG00000024535 ENSRNOT00000036278 2 1 1 80 10 59433550 59434632 AAGTCAGTGCATCAGTTAGG 58 59434673 59434693 TTTCCACAATGGAGAGTTCAG 58 NA Rattus norvegicus 81 LOC102551064 ENSRNOG00000037159 ENSRNOT00000056084 1 1 1 60 2 205714425 205714444 AGTGGTGAGAGCCATTACTG 60 205714465 205714485 CTCAACATCAGGCCATATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc162 ENSRNOG00000037668 ENSRNOT00000000340 2 1 1 80 20 46280236 46283861 TGAAGCAGATGAGAAACCG 58 46280174 46280192 GATTCAGTAGCTCCTGCAC 58 NA Rattus norvegicus 81 Myo1f ENSRNOG00000008409 ENSRNOT00000011513 3 1 1 80 7 18488835 18488855 CAGTACATAGGCCAAGATGTG 59 18488895 18491006 GCCAGAAGAATCTTCCATCAG 59 NA Rattus norvegicus 81 LOC100360876 ENSRNOG00000042823 ENSRNOT00000044379 3 1 1 60 X 97075958 97075977 CATACCCAAGTGTCACAACC 59 97076000 97076018 CAGCCAGACCCATTATGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tsr2 ENSRNOG00000002556 ENSRNOT00000072753,ENSRNOT00000003540 3 2 2 80 X 20144759 20144970 GGAAGAAATGGAGGTGACAG 58 20144698 20144718 TCTGGATCAGAAGGTTGAGAC 59 NA Rattus norvegicus 81 Fam122b ENSRNOG00000002285 ENSRNOT00000089777 1 1 2 80 X 157869212 157878009 GTCTGATTTCAGTTCATGGTGG 60 157878047 157878068 TTCATTTGTAGATGCTCCACAC 59 NA Rattus norvegicus 81 Kirrel3 ENSRNOG00000009772 ENSRNOT00000013036,ENSRNOT00000088046 1 2 2 80 8 36235134 36240064 CTTGACTGTCAATGGACCC 58 36240107 36240126 CATTTGATCTGGCCCTTCTC 59 NA Rattus norvegicus 81 Scn3a ENSRNOG00000005007 ENSRNOT00000006646,ENSRNOT00000081401 2 2 2 81 3 51605330 51606646 TTGGTACACTCTTTGTTCAGC 59 51605269 51605287 CGGGAGGATTACTCAACGT 59 NA Rattus norvegicus 81 Rims1 ENSRNOG00000011000 ENSRNOT00000091865,ENSRNOT00000015453 3 2 5 80 9 28732747 28732765 ATTGTCGCACCAAGTTCTG 59 28664246 28730317 CCCACATAACCACTTTGTCC 59 NA Rattus norvegicus 81 Dbi ENSRNOG00000046889 ENSRNOT00000074685 3 1 2 82 13 36154971 36155958 TGTCTCAGGCTGATTTCGA 59 36154907 36154929 GATGAACAGCATCTCTTCATCAG 60 NA Rattus norvegicus 81 Becn1 ENSRNOG00000020513 ENSRNOT00000027868,ENSRNOT00000075886,ENSRNOT00000082010 2 3 6 80 10 89221805 89221824 TCCATTACTTACCACAGCCC 60 89218042 89221764 TCAATAAATGGCTCCTCTCCT 59 NA Rattus norvegicus 81 Cldn7 ENSRNOG00000017325 ENSRNOT00000079237,ENSRNOT00000023291 1 2 2 124 10 56578182 56578293 CGCCCATGAATATTAAGTACGAG 60 56578377 56578395 TGCAGCTTTGCTTTCACTG 60 NA Rattus norvegicus 81 Smarcc1 ENSRNOG00000020804 ENSRNOT00000082607 2 1 2 110 8 118323044 118323062 ATTCACCCTACTGGGAGTG 58 118323136 118325376 GTCTACCCTAGACATGCCG 59 NA Rattus norvegicus 81 LOC303566 ENSRNOG00000020908 ENSRNOT00000080965,ENSRNOT00000065182 3 2 2 80 10 90207224 90207243 GAGGAGATCATGGTTTCCAC 58 90207283 90208573 GGAACTGGTAACAATCTCAGTC 59 NA Rattus norvegicus 81 Ahcyl1 ENSRNOG00000018569 ENSRNOT00000066501,ENSRNOT00000079993 3 2 2 80 2 210448739 210448760 GAGTCAGAAGATGATTTCTGGT 58 210447883 210448700 ATCATCCAGGATCATGTTAGC 58 NA Rattus norvegicus 81 Pik3r1 ENSRNOG00000018903 ENSRNOT00000075057 2 1 2 128 2 31751773 31753438 GAAATGGATCCACCAGCAC 59 31750826 31751686 TACTTCTTCCCTTGAGATATCTCC 59 NA Rattus norvegicus 81 Pik3r1 ENSRNOG00000018903 ENSRNOT00000025687 2 1 2 80 2 31764120 31770167 TTCTTGATTGTGATGCCGC 59 31764058 31764077 CGAGATAGCGTTTGAAAGCA 59 NA Rattus norvegicus 81 Chst10 ENSRNOG00000012815 ENSRNOT00000087866,ENSRNOT00000017714 2 2 2 88 9 45536282 45538226 AAGTCATGAAGCCAACTGG 58 45536212 45536230 GTTTCTGATGAGCTCCAGC 59 NA Rattus norvegicus 81 Chst10 ENSRNOG00000012815 ENSRNOT00000087866,ENSRNOT00000017714 3 2 2 89 9 45536282 45538227 GAAGTCATGAAGCCAACTGG 59 45536212 45536230 GTTTCTGATGAGCTCCAGC 59 NA Rattus norvegicus 81 Eya3 ENSRNOG00000010396 ENSRNOT00000056170 1 1 2 89 5 150865471 150865489 TCAGTACCAGACACTGCAG 59 150865542 150880364 GTGCTTGAAGCGAAAGGAG 60 NA Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000010689,ENSRNOT00000056727,ENSRNOT00000087190,ENSRNOT00000086524 3 4 5 80 8 99640718 99640736 CGAGAAGTCATGACTCTGG 57 99640778 99717130 CTGGATTTCTATCTCCTGGAG 57 NA Rattus norvegicus 81 Sars ENSRNOG00000020255 ENSRNOT00000091896 2 1 2 82 2 211221389 211221407 TAACTGCACGGATTACCAG 57 211221089 211221345 GGTTATTCTTCCTCTTGTCCA 57 NA Rattus norvegicus 81 Prep ENSRNOG00000051061 ENSRNOT00000076640,ENSRNOT00000091456 1 2 2 80 20 50224963 50234277 GAGAAAGATGTCTTAGAGTGGGT 60 50234317 50234335 AATGTTCTTCACGTTGCGG 60 NA Rattus norvegicus 81 Rbck1 ENSRNOG00000006695 ENSRNOT00000085995,ENSRNOT00000045314,ENSRNOT00000085849 2 3 3 80 3 147803946 147803964 TTACATGCACACTGTCACC 58 147803023 147803902 TCCAGGAATACCATGTCCT 57 NA Rattus norvegicus 81 Rbck1 ENSRNOG00000006695 ENSRNOT00000085995,ENSRNOT00000085849 3 2 3 200 3 147799983 147800915 GTATGAGCAGCGGAAACAG 59 147798792 147798810 CTGTTTCGGATGGTACCCT 59 NA Rattus norvegicus 81 G6pc ENSRNOG00000051171 ENSRNOT00000028033,ENSRNOT00000085831 1 2 3 81 10 89292854 89294583 CTTGTCAGGCATTGCTGTG 60 89294626 89294646 GATGAGACAGTACCTCTGGAG 59 NA Rattus norvegicus 81 Apoc1 ENSRNOG00000018426 ENSRNOT00000046169 3 1 2 153 1 80609768 80609907 AGAACCTTAGATCCAGGGTG 59 80609291 80609310 TTTATCCGGTAAGCTCTCCA 58 NA InUTR Rattus norvegicus 81 Cadm1 ENSRNOG00000018778 ENSRNOT00000052392 1 1 2 80 8 52158191 52168552 TTACCATCATCACAGACACCA 59 52175835 52175853 GTTCTTCTGCGGAATTGGG 59 NA Rattus norvegicus 81 Gfm2 ENSRNOG00000025285 ENSRNOT00000052072,ENSRNOT00000080551 2 2 2 80 2 27976330 27976348 ATCATGCCTTGGAACACCT 59 27976391 27977924 ACAGGACAGTTTGTCCAGAG 60 NA Rattus norvegicus 81 Gfi1 ENSRNOG00000002042 ENSRNOT00000002807 3 1 1 95 14 3064737 3064755 GTTCCACCAGAAGTCAGAC 58 3067151 3067169 CTCTGACTGAAGGCTTTGC 59 NA DesignNoJunction Rattus norvegicus 81 Pitpnb ENSRNOG00000000665 ENSRNOT00000052202 2 1 2 83 12 51312310 51313642 ACTGCAGAACAATTCTGCA 58 51312245 51312263 TTCCCAAGTCAGGTTTGTG 58 NA Rattus norvegicus 81 Cyp2e1 ENSRNOG00000012458 ENSRNOT00000078080,ENSRNOT00000016883 2 2 2 80 1 213516909 213516927 CAAGAAGTGTCTGAGGCTC 58 213516968 213517315 TTATTGTAAAGCTGGATCCAGG 58 NA Rattus norvegicus 81 Shroom2 ENSRNOG00000024322 ENSRNOT00000059431 2 1 2 80 X 23488039 23489615 CAGAGGACAAGAAACAGGAC 58 23487978 23487998 GGGCTGATGTGCTATAATAGG 58 NA Rattus norvegicus 81 Wdyhv1 ENSRNOG00000006700 ENSRNOT00000008785 2 1 2 98 7 97967524 97976921 CAGCAGCTGCTATTGTGAG 59 97967444 97967464 GATATGAAGACAGCGTAGCAC 59 NA Rattus norvegicus 81 Cabp1 ENSRNOG00000001173 ENSRNOT00000039281 3 1 3 80 12 47193996 47203595 CCTCTCGAGAAAGGATAGATCG 60 47204371 47204390 TTGTCCTTGTCAAATTCCCG 59 NA Rattus norvegicus 81 Itga2b ENSRNOG00000022071 ENSRNOT00000055179,ENSRNOT00000036112 2 2 2 80 10 90403056 90403076 AGAAGAAGGAGAATGAGTCCA 58 90402848 90403015 TCGTGATTCCTATCCGAGTG 59 NA Rattus norvegicus 81 Dctd ENSRNOG00000013215 ENSRNOT00000017670,ENSRNOT00000059459 3 2 2 60 16 47181358 47181378 TGTAATGAATGTGCGAAGCTC 59 47178444 47178464 ATCTTGCTGTACTTTGGTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Vav2 ENSRNOG00000007422 ENSRNOT00000081376 2 1 2 82 3 5817509 5817531 GTTAGACACTACACTCAAGTTCC 59 5816034 5817467 GTGTGAACACTGGAGATCG 58 NA Rattus norvegicus 81 Mfsd6 ENSRNOG00000012663 ENSRNOT00000083487 3 1 2 80 9 53706325 53706345 CGCTCTACCAAGTTAAAGAGC 59 53706386 53708455 CCATGTGCAACTGTAAAGGT 59 NA Rattus norvegicus 81 Ubr4 ENSRNOG00000018183 ENSRNOT00000039663 1 1 2 93 5 157899481 157899499 CCTAACCTGAACCAGAGCA 59 157899556 157901426 AACTCACAACCAGCCTCTC 60 NA Rattus norvegicus 81 Map4k4 ENSRNOG00000014013 ENSRNOT00000019180 3 1 2 80 9 46763228 46765332 TGTAAGGATTGACTTGACTGC 58 46765372 46765392 TAGTCTGTCACTTTGTGAGGT 59 NA Rattus norvegicus 81 Syncrip ENSRNOG00000000204 ENSRNOT00000074515 1 1 3 80 8 96132533 96132551 GACATTGCTTGATGCTGGT 59 96131774 96132489 CTATGTGCAACTAGCCCTG 58 NA Rattus norvegicus 81 Enpp2 ENSRNOG00000004089 ENSRNOT00000005561 1 1 2 171 7 94489770 94500831 ACCAAAGGATCAACAGAAGAG 58 94488999 94489637 TACTTTCTTCAGCAGCCTG 58 NA Rattus norvegicus 81 Wdr75 ENSRNOG00000003825 ENSRNOT00000083864 2 1 2 80 9 52699810 52704879 ACAGTAACAGGCACCAGTC 60 52704922 52704941 TTTGTTCTTCTCTGACCCGT 59 NA Rattus norvegicus 81 Tusc3 ENSRNOG00000013061 ENSRNOT00000017452,ENSRNOT00000085300 2 2 2 80 16 56326746 56326767 TTTAAGGAGGAACAACTTGGAG 58 56326802 56350386 GTCATAGCAAAGACTATACACAGAG 59 NA Rattus norvegicus 81 Tusc3 ENSRNOG00000013061 ENSRNOT00000085300 1 1 2 138 16 56385938 56385956 AAGCAGCAACTTCCAAAGG 59 56388507 56389755 AGCAGATACCTATATGGATAGCC 59 NA Rattus norvegicus 81 Tusc3 ENSRNOG00000013061 ENSRNOT00000085300 3 1 2 140 16 56385938 56385956 AAGCAGCAACTTCCAAAGG 59 56388507 56389757 TAAGCAGATACCTATATGGATAGCC 59 NA Rattus norvegicus 81 Vars ENSRNOG00000000867 ENSRNOT00000001160 3 1 2 80 20 5004622 5004641 GTGTTAGACACCTGGTTCTC 58 5004682 5004782 CACACTGAGATCTTCTGACTG 58 NA Rattus norvegicus 81 Sec14l4 ENSRNOG00000004555 ENSRNOT00000087383,ENSRNOT00000006116 3 2 4 122 14 84308102 84308362 GAGCTCGGAACTTTGACCT 60 84308575 84309824 TGTACTTCTGGATCACCTCTG 59 NA Rattus norvegicus 81 Rdx ENSRNOG00000012237 ENSRNOT00000034924 2 1 2 150 8 56609406 56609424 AGAACGAGCATGATGAGCA 60 56609537 56610458 GAACTTAATGCCTGGAGCTG 59 NA Rattus norvegicus 81 AABR07013111.1 ENSRNOG00000030575 ENSRNOT00000045584 1 1 1 60 2 223029564 223029583 TCCAGTACAACTTCTAGGGC 59 223044887 223044906 CTGGATGTCACATCTCATGG 58 NA DesignNoJunction Rattus norvegicus 81 Azi2 ENSRNOG00000010096 ENSRNOT00000013450,ENSRNOT00000092142 1 2 2 80 8 126421644 126422251 CAGACTGGAGAAGATAAGTAAAGAC 59 126422286 126422307 AGCTCTACTTCTTTACACTGCA 60 NA Rattus norvegicus 81 Il31ra ENSRNOG00000042080 ENSRNOT00000073469 3 1 2 80 2 44379018 44379391 CTCTTTAAATCTGGTCAGTCTACC 59 44378961 44378980 GTGCAAGTCAGATTCCTGTC 59 NA Rattus norvegicus 81 Lcn12 ENSRNOG00000028730 ENSRNOT00000080257 1 1 2 89 3 2716628 2717612 TGCAGAGGACTGGTTACTG 59 2716557 2716575 ATGTTGAGAGCAATGGCAG 59 NA Rattus norvegicus 81 Elmo2 ENSRNOG00000018747 ENSRNOT00000049262 1 1 2 80 3 161989754 161989774 CGAGTTCATCAACATGGATGG 60 161988247 161989712 TCACTGTAGTGGGACAGGA 60 NA Rattus norvegicus 81 Zdhhc3 ENSRNOG00000004344 ENSRNOT00000005817 2 1 2 80 8 132173020 132173647 CCTGTTCACAATGTACATAGCT 59 132172961 132172979 TCTTCAAAGCAATGCAGGA 58 NA Rattus norvegicus 81 Cdc40 ENSRNOG00000000581 ENSRNOT00000087740 1 1 3 80 20 48504381 48504399 TTGACCAAATCGCCTTCAG 59 48504441 48519707 CAGATCTTCCTTAACTGCCAC 59 NA Rattus norvegicus 81 Tasp1 ENSRNOG00000004493 ENSRNOT00000055630,ENSRNOT00000083637 1 2 2 80 3 132968383 133012108 TGTGAGTACCTCAGGATGTG 59 132968322 132968341 TCTTCAGCTTGTAAAGCGTG 59 NA Rattus norvegicus 81 Tfpi ENSRNOG00000005039 ENSRNOT00000006787 2 1 2 111 3 71863402 71863420 GTACAGAAGGGTGACTACG 57 71854420 71863327 CATCATAGTCCCATTGGCT 57 NA Rattus norvegicus 81 Atg5 ENSRNOG00000000322 ENSRNOT00000080283 1 1 2 195 20 49325108 49330220 TGGAACATCACATTTCAAGC 57 49332433 49352985 CAAATCTGTCATTCTGCAGTC 58 NA Rattus norvegicus 81 Slc25a15 ENSRNOG00000011881 ENSRNOT00000050637 2 1 2 80 16 74550678 74550699 TCAAGTTCTTTCTATGACCGGA 59 74550735 74551227 CTGTATCCTCCTTCATTCTTTACG 59 NA Rattus norvegicus 81 Lrp4 ENSRNOG00000015285 ENSRNOT00000086242 1 1 2 89 3 80411622 80411640 TACCGAACTTCCACTCAGG 59 80411689 80412765 GAAGAGCTGCTCTTTCTTATAGC 59 NA Rattus norvegicus 81 Unc5d ENSRNOG00000011858 ENSRNOT00000085659 1 1 2 81 16 67522476 67522494 TTGGTGTCACCCTCTACAG 59 67522536 67527006 AGAGAATTTCCTGTCAATGCAG 59 NA Rattus norvegicus 81 Unc5d ENSRNOG00000011858 ENSRNOT00000015879 2 1 2 81 16 67522515 67522533 GAGTGGACGTCATTGACTC 58 67522575 67527006 AGAGAATTTCCTTGACGAACTG 59 NA Rattus norvegicus 81 Gad1 ENSRNOG00000000007 ENSRNOT00000000008,ENSRNOT00000087712,ENSRNOT00000087134 1 3 4 83 3 56886776 56886880 CAGAACACAGTCACTATTCCA 58 56886922 56886943 CATTGCACTTTATCAGGATCAC 58 NA Rattus norvegicus 81 Scn9a ENSRNOG00000006639 ENSRNOT00000079020 1 1 2 80 3 52660199 52660217 CTGCTTTGTACATGCTGTC 57 52659851 52660156 GCATGCTGAATAATGAGTGC 58 NA Rattus norvegicus 81 Scn9a ENSRNOG00000006639 ENSRNOT00000065126 1 1 2 80 3 52660195 52660214 CTTTGTACATGCTGTCTCCC 59 52659848 52660155 TTAGCATGCTGAATAAGGAGTG 59 NA Rattus norvegicus 81 Eya2 ENSRNOG00000019203 ENSRNOT00000030119 2 1 2 84 3 162465037 162465656 AACTCTCGACCCAACTGTG 60 162465704 162465722 CCAGACCATACAGCAGGAC 60 NA Rattus norvegicus 81 Casp9 ENSRNOG00000012944 ENSRNOT00000017972,ENSRNOT00000088523,ENSRNOT00000080721,ENSRNOT00000085378 3 4 4 113 5 160356362 160358472 ATCGAGGATATTCAGCGGG 59 160358548 160358567 TAAGCAGGAGATGAAGCGAG 60 NA Rattus norvegicus 81 Capzb ENSRNOG00000007330 ENSRNOT00000083577,ENSRNOT00000010308 2 2 2 81 5 157731174 157731192 GATGCTATGGCTGCAAACC 60 157731236 157737867 GTCCTTCTCCATCTGTCTGG 60 NA Rattus norvegicus 81 Pmepa1 ENSRNOG00000050404 ENSRNOT00000071853 1 1 1 266 3 171302444 171302462 AGCCACTACAAGCTGTCAG 60 171296061 171296079 ATCAGACAGCGAGATGGTG 60 NA DesignNoJunction Rattus norvegicus 81 Slc10a2 ENSRNOG00000037753 ENSRNOT00000081359,ENSRNOT00000057310 2 2 2 80 16 90325669 90332898 CATGGACCTCAGTGTTAGC 58 90332939 90332960 GTATAGATGAAGAGGCAAAGGG 58 NA Rattus norvegicus 81 Gmeb2 ENSRNOG00000013339 ENSRNOT00000044026,ENSRNOT00000018237 2 2 2 80 3 176768442 176768460 AGACAGCAGAGCTAACCTC 59 176762332 176768401 ACATGTTCATCGTACTGAACAC 59 NA Rattus norvegicus 81 Rab20 ENSRNOG00000023991 ENSRNOT00000031109 3 1 1 62 16 83358444 83358465 CAACATCTCTATATGGGACACC 58 83381221 83381239 CAGTACATGGAGCCCAGAC 60 NA DesignNoJunction Rattus norvegicus 81 L3mbtl1 ENSRNOG00000007044 ENSRNOT00000063906 2 1 2 165 3 159333761 159335181 GTTAGCCTCTTCCAGGACG 60 159335309 159335656 CCTCCTTGTAACCTTTGGGA 59 NA Rattus norvegicus 81 AABR07049386.1 ENSRNOG00000054001 ENSRNOT00000080806 2 1 1 60 5 120176311 120176329 TGGCTCAGTTATCACAGTG 57 120176269 120176290 TCAGTATTCACAGTACTGTACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056690 ENSRNOT00000077097 2 1 1 60 2 26443534 26443552 GCATACCAGATGTGCTGAC 59 26443492 26443513 CACAAATTACACAGTTTCCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055744 ENSRNOT00000092215 2 1 1 60 5 42395560 42395578 GTGGTCTTCAGTCAAGGGT 59 42395599 42395620 GCTTGTTTGTAGGTTCTAGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012582.1 ENSRNOG00000060042 ENSRNOT00000084190 1 1 1 61 2 198360395 198360413 TTGAGTTCTTCGTCGTTGC 59 198360438 198360456 AAGAAGACCCGCATCATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC144660.1 ENSRNOG00000039689 ENSRNOT00000050796 3 1 1 62 11 43503666 43503688 CACTCTATCTGAATGTATGGCAC 59 43503711 43503729 AAACATTCCGTGGTTGCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07044273.1 ENSRNOG00000000748 ENSRNOT00000000975 1 1 1 60 20 845249 845268 ATGATGCCAGCTTTGAAACC 60 845290 845309 GCCCACAAGAAGAACATGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038957.1 ENSRNOG00000054638 ENSRNOT00000077667 3 1 1 60 X 64914282 64914302 GAATCAGGATCTTCAGCTGTG 59 64914324 64914342 GTGGTCTGCAAAGATGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056329 ENSRNOT00000081950 2 1 1 64 2 131621020 131621038 GCTGAGGATCATCCATTCC 58 131620974 131620992 CAAGTTTCCCACACTTGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056497 ENSRNOT00000090063 1 1 1 60 2 180669056 180669078 CAGAGAAGATATCATGATCACGG 59 180669098 180669116 GAGTGCCATGGATAAGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051920 ENSRNOT00000077081 1 1 1 66 2 198528060 198528078 TTATCCATTGCACTCCGGA 59 198528108 198528126 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059354 ENSRNOT00000080674 2 1 1 60 2 170631760 170631780 AGGACCAGTCTTTAGTCAGAG 59 170631720 170631739 GTTTGGAGGTTGTAACAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056607 ENSRNOT00000087060 3 1 1 60 2 263540971 263540989 TCCTGTCTGTCAGTAGGTG 58 263541010 263541031 GGTCAGAATACTGAGCATTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000056834 ENSRNOT00000088758 2 1 1 61 11 81375613 81375637 GTTTCTTAACTATACCTGTCTGCTG 60 81375576 81375594 TGTATGAGACCAAGCGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA55 ENSRNOG00000060810 ENSRNOT00000088888 2 1 1 60 5 140987512 140987530 GAGCAGAGGAAATCCAGAC 58 140987554 140987572 CAGAGTTGTAGAGACAGGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094348.2 ENSRNOG00000057778 ENSRNOT00000091094 1 1 1 165 20 5125467 5125485 ATGAGAAAGTCCACAGCCC 60 5125318 5125336 TACTTAAAGTGTGCGCACG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000053219 ENSRNOT00000078375 1 1 1 60 5 144839361 144839379 TAGGTGGCAGAAAGGACAG 59 144839319 144839337 TCAGAGGTTCACAGGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA71 ENSRNOG00000058326 ENSRNOT00000077886 1 1 1 60 8 26093345 26093365 GGATACAGAAAGACCTGTTCC 58 26093387 26093405 CAGACTTTGGAGGAGTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052585 ENSRNOT00000087324 3 1 1 66 8 13762767 13762785 AGATCTGGCTGTGACACAG 59 13762812 13762833 TACCTTACTAGACAGGTTAGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD69 ENSRNOG00000055658 ENSRNOT00000077419 1 1 1 60 16 7099154 7099174 GAAGCAATGATGACAGATTGG 58 7099114 7099134 GGTTGGATTGAACAAACTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD69 ENSRNOG00000055658 ENSRNOT00000077419 2 1 1 60 16 7099153 7099174 GAAGCAATGATGACAGATTGGA 59 7099114 7099134 GGTTGGATTGAACAAACTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA14 ENSRNOG00000059039 ENSRNOT00000082785 1 1 1 60 8 69760815 69760835 ACTGTACCTGGTATTGATTGC 58 69760856 69760875 TGTATGTGACTGTCTACGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA14 ENSRNOG00000059039 ENSRNOT00000082785 3 1 1 60 8 69760815 69760836 ACTGTACCTGGTATTGATTGCA 60 69760856 69760875 TGTATGTGACTGTCTACGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059021 ENSRNOT00000089219 3 1 1 61 11 46962275 46962293 ACTCCATATGCGTCCATCC 59 46962232 46962250 CACCAGTTCACAGCTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000048748 ENSRNOT00000074754 2 1 1 76 11 5746945 5746963 TCTTACTGTGTTACGCCCT 58 5746887 5746905 TTTCAATTCAGACGCAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012575.1 ENSRNOG00000049706 ENSRNOT00000073822 2 1 1 67 2 197784292 197784310 GATCTCTGTGAGTTCGAGG 57 197784341 197784359 CTCTGTGTATTGCTGGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053492 ENSRNOT00000089036 3 1 1 63 5 70726343 70726361 GTTACAGGTATGGCTGCTG 58 70726388 70726406 TGAGGTGACATAGCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054944 ENSRNOT00000090284 1 1 1 60 5 101849474 101849492 GCTCAGTTGAAGAGGACGA 60 101849432 101849451 ATACCCTTGACCGAAGACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054664 ENSRNOT00000089768 2 1 1 61 8 95093803 95093823 GAAAGAGGCCATATCTACCCT 59 95093762 95093786 GGCTACTAATCATTAAGATGCTCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC144660.2 ENSRNOG00000054940 ENSRNOT00000089139 3 1 1 157 11 43415692 43415714 TTTCTCTGGCTCGATCCAG 59 43415833 43415853 GGCCATAGTACAAAGACACAG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000055491 ENSRNOT00000088826 2 1 1 60 11 49053542 49053560 AGATGGCAGAAAGGCTACG 60 49053500 49053524 CTAATAATTCAGATGTTCCCAGGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000061362 ENSRNOT00000089659 2 1 1 60 2 201142203 201142221 GAGACTTGGACAGCTCAGG 60 201142161 201142181 ATGTATAGGAAAGCTGGGTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060579 ENSRNOT00000077684 1 1 1 60 11 85813958 85813978 TCCATTCCTAGAGGCATTGAG 59 85813998 85814018 GTCAGAACACTGAGCATAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052855 ENSRNOT00000082777 1 1 1 60 16 24160783 24160804 TGATTCAGTAGGTGGCATAGAG 60 24160822 24160843 TTACAGTTCAGAGCACTAAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061090 ENSRNOT00000086129 2 1 1 61 16 73531250 73531268 CTGTGTCACATGTGCACAG 60 73531292 73531311 ACTGAGCATAGACATAGCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060900 ENSRNOT00000089992 1 1 1 60 X 152800988 152801010 CTGTCATATCTGGTACCTTACTG 58 152801028 152801048 ATTTAGCCACCTAGATCAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135294.1 ENSRNOG00000053696 ENSRNOT00000079637 1 1 1 60 3 101047272 101047291 CTATTGTGAAGCCCTAGGCA 60 101047231 101047250 CATTCCTGAAGGAGGAAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000060954 ENSRNOT00000091276 1 1 1 60 8 17692153 17692171 TTCAAGCAGACGCCTAGAG 60 17692111 17692131 TATTGAAGTCCAGAAGAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000053522 ENSRNOT00000082517 2 1 1 80 15 39573383 39573401 CACCACTGGATAGTTGCCT 59 39571064 39573339 CTGATTTCCCTGGTACCCA 59 Novel Rattus norvegicus 81 Tmc1 ENSRNOG00000051262 ENSRNOT00000077601 2 1 2 80 1 238375821 238376712 CACGATGAACTTTAAGGAAGC 58 238375761 238375780 CTCAGGAATCTGATGAGGTG 58 Novel Rattus norvegicus 81 Tmc1 ENSRNOG00000051262 ENSRNOT00000076785 2 1 2 83 1 238413391 238435099 TTGAAGTTCTCAAGGAAGCA 57 238413327 238413346 ATGCAAACCACTTCTTTCCT 58 Novel Rattus norvegicus 81 U4 ENSRNOG00000057474 ENSRNOT00000081241 3 1 1 77 16 73461214 73461233 CAATGAGGTTTATCCGAGGC 59 73461156 73461174 AATTACATCGCTGTCCCGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056848 ENSRNOT00000089826 2 1 1 60 8 62079086 62079106 GCAACCAAATTTAGCCATCAC 59 62079046 62079065 CATGAACAGTGAAGGAAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057236 ENSRNOT00000088634 1 1 1 60 8 36678275 36678296 CCAAATGTTGGAAACTTGACTG 59 36678316 36678335 GGTAACATGAATGCAGTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057236 ENSRNOT00000088634 2 1 1 60 8 36678180 36678198 CCTAGCAAGGGAGATACCC 59 36678222 36678240 TAAAGGAACCTTGCCCTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004776.1 ENSRNOG00000051568 ENSRNOT00000079345 2 1 1 60 1 155954913 155954934 CGAACAGAAGATAGAAGAAGCC 59 155954874 155954893 AAGAACGAGAGTCTTCTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060581 ENSRNOT00000084808 1 1 1 60 17 21251929 21251950 AGAAGGGTACAGAGAAGATCAG 59 21251890 21251908 CTTCCCACATTTGCAGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000058756 ENSRNOT00000079881 1 1 1 60 17 20263034 20263054 TAGGAGGAAGTACACTGAAGC 59 20263073 20263094 GACCTTATGCTGTATTTGAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059165 ENSRNOT00000081287 1 1 1 60 17 20063404 20063426 CGATACAGAGAAGATTAGCATGG 59 20063366 20063384 ACACTTCGTGAATTTGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057411 ENSRNOT00000081030 2 1 1 60 1 169806023 169806042 CTTCACTGTGGCAATATCGT 58 169806062 169806083 CCAGTTAGCAATAATCATGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061284 ENSRNOT00000079519 2 1 1 60 4 176264352 176264372 CAACTGATGTGGTTAAGTGGG 59 176264312 176264330 TGAAACTAAGGCACCTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068306.1 ENSRNOG00000036543 ENSRNOT00000054650 3 1 1 61 9 97384950 97384973 CTACTGTTAGGAATCGTAATGCAG 60 97384912 97384930 TGAGCCTAGCCTTTAACGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041036 ENSRNOT00000062789 2 1 1 60 6 105867460 105867479 AGCCATACCATTCTAACAGC 58 105867502 105867520 TACTGACAAGGTCTGACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000056178 ENSRNOT00000085819 1 1 1 60 6 74466492 74466510 TTCAAGCAGACGCCTAGAG 60 74466532 74466552 TATTGAAGTCCAGAAGAGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07038021.1 ENSRNOG00000056631 ENSRNOT00000086120 2 1 1 80 X 37346196 37347014 TTCTCATTCCAGAGCTCCA 58 37346134 37346153 CCCTTTCCATTTCTGTGTCC 59 Novel Rattus norvegicus 81 AABR07002353.2 ENSRNOG00000053141 ENSRNOT00000082460 2 1 1 60 1 71924349 71924369 CTCGTGAAACCTTTCTTAGCC 59 71924309 71924327 CAAATCTCCAGTGGTGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060084 ENSRNOT00000091563 2 1 1 60 4 56512039 56512057 ACAATCCCGTCAGTAGGTG 59 56512079 56512099 CTCATAGGTGAGAACAGAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA55 ENSRNOG00000054868 ENSRNOT00000089157 2 1 1 60 X 37279678 37279696 CAGAGGAAATCCAGACGGG 60 37279636 37279656 TGGCAGAGTTGTAGAGATAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000052285 ENSRNOT00000089539 2 1 1 60 6 21707449 21707467 GTCCTTTGTTCGTCCTAGC 58 21707407 21707425 TCCTTGGCATAAGACAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Mroh4 ENSRNOG00000005382 ENSRNOT00000076443,ENSRNOT00000007671 1 2 4 80 7 115865022 115865134 GTGCCTCTTGAACATCCTC 58 115864960 115864979 CCTACGATGACCAGTATGAC 57 Novel Rattus norvegicus 81 Mroh4 ENSRNOG00000005382 ENSRNOT00000076443,ENSRNOT00000076775 2 2 4 94 7 115874080 115874352 ATAACTCAAAGACAGGGTGC 58 115874005 115874023 TTTGGAAGGGAAACAGAGC 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000054805 ENSRNOT00000078611 3 1 1 61 X 132996426 132996444 GGTCTAGTTTCACCAGCAC 58 132996383 132996403 GGGCCATGTTAATCTTCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057524 ENSRNOT00000084572 3 1 1 60 2 184860111 184860130 TGCTAACCACTGTGATTTCC 58 184860152 184860171 CCCACTACCACAAATTAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055110 ENSRNOT00000078590 2 1 1 60 2 147058288 147058309 TGGGTACTAAGTCATTTGTGAG 58 147058329 147058348 TGAGCTTAGCTATTGCCTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121203.2 ENSRNOG00000055449 ENSRNOT00000089603 3 1 1 60 3 102703751 102703772 GGCTGCTTTACACAGATATTCC 60 102703792 102703811 CAAGGGTTACCATCTCACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059410 ENSRNOT00000091516 3 1 1 60 9 74256119 74256141 GTTGTATCATATGTGTAGGTGGC 59 74256158 74256179 TCAGAACAGTGATTGAAGAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA6 ENSRNOG00000053606 ENSRNOT00000081699 2 1 1 60 9 94908385 94908403 CTGTCATGGGCAGAAACAG 59 94908424 94908445 TGTTAGGGAAGACAGAAAGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016310.1 ENSRNOG00000048867 ENSRNOT00000074692 1 1 1 89 14 96499569 96499587 CACAATTGCTCAACAGCCT 59 96499640 96501016 TTGAAGAGCTCACCGAGAG 59 Novel InUTR Rattus norvegicus 81 AABR07061036.1 ENSRNOG00000053228 ENSRNOT00000090283 2 1 1 80 4 103024461 103024806 TTGGATTCCAGCTTCCAGG 60 103024399 103024419 GAAGCTTGATCTCCAAGTGTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000055016 ENSRNOT00000086386 1 1 1 60 9 15830755 15830775 GTCATGATATAGGGACATGGC 58 15830715 15830738 CGGACCACTCCATAAATTTATAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000051540 ENSRNOT00000091290 1 1 1 60 17 90065327 90065347 CCTCTCATAATGTCGCATGTC 59 90065287 90065305 CACAGAGGCTATGCATTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055073 ENSRNOT00000080392 3 1 1 61 17 42568507 42568527 CTTTGGCTGTGTAACATACTG 57 42568549 42568568 ATCACCTTTGTGCATGAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051879 ENSRNOT00000077140 2 1 1 60 9 3981611 3981631 ATTCTGAAATTGGACCGACAC 59 3981652 3981671 TGTACATCATCCTTGCTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000248.1 ENSRNOG00000051844 ENSRNOT00000091348 2 1 1 80 1 6279515 6279537 TATGGCCACTTGATAGAGGG 59 6279452 6279470 TGACCTCCAGTTGAACCAG 59 Novel Rattus norvegicus 81 AC106663.2 ENSRNOG00000055372 ENSRNOT00000088751 1 1 1 60 14 86711703 86711726 CAATTGAAATGGATGCAGTCAG 59 86711746 86711765 TCCAGCTCCTGTCATTTACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07068612.1 ENSRNOG00000048984 ENSRNOT00000073084 1 1 1 60 9 112127764 112127782 GAGGGAAAGTTGGAGATGG 58 112127801 112127824 GGATTAGTGTCGTTATAGAAACGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000059902 ENSRNOT00000084135 2 1 1 60 16 49064580 49064598 AGGGTAAAGGAAGTCTCCA 57 49064538 49064557 CAGGATCCAAAGAGGAAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058181 ENSRNOT00000088150 2 1 1 60 15 84876532 84876550 ACATGTGCATCAGTAGGTG 58 84876568 84876592 ATAGGTCAGAACACTGAGTATAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017745.3 ENSRNOG00000054569 ENSRNOT00000087199 3 1 1 105 15 30550240 30550364 CCTACTCGGAAGGACTCAC 59 30550433 30550451 GCGTGTGGCTGAATAAGTG 60 Novel Rattus norvegicus 81 SNORA63 ENSRNOG00000061340 ENSRNOT00000078726 3 1 1 60 16 9730864 9730885 TTAAAGCATTACTACCTCTGCC 58 9730825 9730844 TTTGAAGCCAAGCATCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004812.2 ENSRNOG00000052460 ENSRNOT00000086184 2 1 1 61 1 158913079 158913099 CAGCATTTGCTGTCACCTG 60 158913036 158913055 TGAGATTTCACCTCACACCA 59 Novel DesignNoJunction Rattus norvegicus 81 AC128353.1 ENSRNOG00000046711 ENSRNOT00000073444 1 1 1 80 13 37512661 37512683 AGATTTCACCTCACATGCG 58 37512726 37512745 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 AC128353.1 ENSRNOG00000046711 ENSRNOT00000073444 2 1 1 80 13 37512660 37512683 GAGATTTCACCTCACATGCG 59 37512725 37512744 TCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 AABR07025476.1 ENSRNOG00000046180 ENSRNOT00000075699 1 1 1 77 16 38805345 38805363 AGCAATGAATGCTTCAGGA 57 38805286 38805306 ATGATCATCTGAGGATGACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD59 ENSRNOG00000057249 ENSRNOT00000089900 3 1 1 61 7 2506335 2506358 CTTCCTTGATGATTAGCTTCTGAC 60 2506378 2506396 GAATGGCATCTGGCTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000054789 ENSRNOT00000087705 2 1 1 60 3 12600244 12600264 ACAGTCCTTTATTCATCCCAG 58 12600204 12600223 TAGGCATAAGACAGCTTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072200.1 ENSRNOG00000059704 ENSRNOT00000079379 1 1 1 86 10 101989785 101989806 GTTCTTACCCAGGACCCAG 59 101989858 101989876 ATTCCAGAGCCTTAGAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000051820 ENSRNOT00000081404 3 1 1 60 X 43276852 43276875 CTTCAAGTATAGCTTCTCTGTCAC 59 43276815 43276835 ACATAGCCTCTTTCCTCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053333 ENSRNOT00000092038 3 1 1 60 17 24046674 24046695 ATACAGAGAAGATTAGCATGGC 58 24046635 24046655 GGACTAGTTCACGAATTTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055274 ENSRNOT00000085486 2 1 1 60 6 107753317 107753335 TGGTTACTGTGTCACATGG 57 107753275 107753293 AGCACAGACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000052857 ENSRNOT00000085672 3 1 1 98 16 11921143 11921161 TAGAGCAGGTACAGCATGG 59 11921222 11921241 CTTACCCTACAGGTGGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000058792 ENSRNOT00000088641 3 1 1 60 X 71442976 71442997 AGAAGGATAAAGGAAGTCTCCA 58 71443018 71443036 GATCCAAAGAGGAAGTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052584 ENSRNOT00000083689 2 1 1 60 16 89613404 89613423 AAATTGGAAAGATGCAGGGA 58 89613363 89613385 GTACTATTGGTGTCATCCTTTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000055256 ENSRNOT00000082249 2 1 1 60 X 76845053 76845071 TAAGAGATGGGACAGGAGC 58 76845094 76845113 GGAACTGAAATACCAGGTCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056232 ENSRNOT00000077947 2 1 1 60 17 9764770 9764792 GATACAGAGAAGATTAGCATGGC 59 9764732 9764750 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056995 ENSRNOT00000085198 1 1 1 60 11 14519041 14519060 TGTGACTACTGTGTCATGTG 58 14519000 14519023 CATAGATATAGCTTCTGTCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909704 ENSRNOG00000049596 ENSRNOT00000076262 2 1 1 80 1 271337121 271338016 TAGACCAGGTCATCAGTGAG 58 271338059 271338077 TCTCATAGAGCAAGGCCAG 59 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000048993 ENSRNOT00000075536 2 1 1 60 2 78170383 78170401 ACCAGGTTGTCTAAGGAGG 58 78170420 78170443 GGATATCCTTGAACTTCTGTTTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07037203.1 ENSRNOG00000028611 ENSRNOT00000031767 3 1 1 60 X 15949941 15949961 AGCAACAAAGCTCCTATAACC 58 15949901 15949920 CTGCTGTTGTACTGGTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA12 ENSRNOG00000052607 ENSRNOT00000085928 1 1 1 60 1 263890774 263890792 GTTCAAATGGGCCTGACTC 59 263890732 263890750 TGTCTCTAAGCCTTTGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058759 ENSRNOT00000089679 2 1 1 60 16 13644472 13644492 TGTTACAGGTATCAGATGTGC 58 13644513 13644532 GAGCATGACATAGGCTTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC109427.1 ENSRNOG00000056259 ENSRNOT00000082987 1 1 1 60 9 100885054 100885072 GTTCCTTTCCCTGTTGCTG 59 100885095 100885114 CTAGGAGAAAGACCACAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055069 ENSRNOT00000088754 3 1 1 60 X 110858402 110858420 CCCTATAGAGGCAGAGCAC 59 110858360 110858381 CTATCAGGGAGTACAGCTAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066739.1 ENSRNOG00000061824 ENSRNOT00000080626 3 1 1 106 9 13846891 13846909 CATTGTGGGTAGTCAGCCT 59 13846979 13846997 TACGACTTGTGCGTACTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003302.1 ENSRNOG00000058668 ENSRNOT00000090142 1 1 1 122 1 104052102 104052121 GGAAAGCTACAGGGATAGGG 59 104051999 104052017 TTGTTAGCACAGGACAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000053593 ENSRNOT00000080809 3 1 1 60 1 189345549 189345567 CCTAGATGACTGGACAGGA 58 189345507 189345525 TCTAAGCTCTGGTGAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA40 ENSRNOG00000051707 ENSRNOT00000082211 3 1 1 64 8 13867333 13867351 GACAAAGGCAGGTTGACAG 59 13867378 13867397 CTGAACAATGAGTTCTGGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000054307 ENSRNOT00000088781 2 1 1 60 10 15748245 15748263 GTTATAATGCGCTATGCCG 57 15748203 15748222 AAGGTCACCATATTGATGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000061671 ENSRNOT00000089838 1 1 1 60 10 68008217 68008236 TCGAGGTACTTTAAGAGGCA 58 68008176 68008195 GATCCAAAGAGAAGGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA28 ENSRNOG00000058445 ENSRNOT00000083773 1 1 1 60 8 117588482 117588503 CAAGAAAGTCTCACCTATTCCA 58 117588443 117588464 GATCCTATATGACAGCTTGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000056543 ENSRNOT00000090722 2 1 1 60 10 67489762 67489780 CTGCTTAGCTGTGTCTGTC 58 67489803 67489822 ACACTGAGTGCAGAAATAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041970 ENSRNOT00000063723 3 1 1 62 1 270635198 270635216 GAATGCACCCAATCTTGTC 57 270635240 270635260 TTTAAGTACTAACCAGGCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055435 ENSRNOT00000080739 2 1 1 60 1 218731021 218731041 TTACTTCAGCAGCATACACAG 59 218731061 218731081 AGGGACCCTACTAATCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071000.1 ENSRNOG00000051416 ENSRNOT00000047078 3 1 1 60 8 95943998 95944019 TAACTATGGGACAGCTTTACGA 59 95944039 95944058 TAGGCCACATACAAGAATCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058958 ENSRNOT00000091138 1 1 1 60 10 31643321 31643344 ACGATACAGAGAAGATTAGAGTGG 60 31643284 31643302 AGGCTTCATGAATTTGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000055217 ENSRNOT00000087732 1 1 1 66 6 42853853 42853872 ATTTATGACAGGCTCATCCC 58 42853901 42853919 GTTAGGAGCCAGTTTGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056743 ENSRNOT00000087879 1 1 1 68 2 207073722 207073743 GCAGCACATATGGTTAAATTCG 59 207073675 207073693 TTGTGTCATCCTTGTGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057348 ENSRNOT00000089741 2 1 1 60 16 18469764 18469782 GGGAGATAGGTGCCATGAC 60 18469806 18469824 GAGTGCAGGAACTAAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057142 ENSRNOT00000088007 1 1 1 60 4 86869154 86869172 GTATCAGTAGGTGGCCGAG 59 86869112 86869132 TTCATAGGTCAGAACACTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057142 ENSRNOT00000088007 3 1 1 60 4 86869157 86869175 TGTGTATCAGTAGGTGGCC 59 86869115 86869133 ATAGGTCAGAACACTGGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056646 ENSRNOT00000090634 3 1 1 64 2 26671224 26671243 ATAAACCTGGCTTGACACAG 58 26671179 26671197 TTCAATTGGCATGCCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097153.1 ENSRNOG00000045403 ENSRNOT00000070670 1 1 1 60 2 2478736 2478754 ATAGCTGGTTGGCATTCTG 58 2478694 2478718 CATCCTGGTATAGTTAACAACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027752.3 ENSRNOG00000057700 ENSRNOT00000089758 1 1 1 72 17 43779502 43779520 GAGACAACAAGAAGACGCG 59 43779557 43779575 TTGTTGAGCTCCTCATCGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027752.3 ENSRNOG00000057700 ENSRNOT00000089758 2 1 1 73 17 43779501 43779519 AGAGACAACAAGAAGACGC 58 43779557 43779575 TTGTTGAGCTCCTCATCGT 59 Novel DesignNoJunction Rattus norvegicus 81 AC121203.1 ENSRNOG00000054410 ENSRNOT00000091642 2 1 1 60 3 102588546 102588565 CTCATCAAAGGCACTATCCA 57 102588505 102588525 TACAAAGTACAGCAGAACCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051527 ENSRNOT00000091483 1 1 1 60 4 130896933 130896954 ATACAGAGGAAGATTAGCATGG 58 130896894 130896912 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Ifit2 ENSRNOG00000036604 ENSRNOT00000054757 1 1 1 80 1 252894866 252897539 CAGCAGTCATGAGTACAGC 58 252897583 252897601 TCAGGTTCCAGGTGAAGTG 59 Novel InUTR Rattus norvegicus 81 Ifit3 ENSRNOG00000022839 ENSRNOT00000031025 1 1 1 80 1 252906325 252906343 TTTCTGAACTGTTCAGCCC 58 252906387 252909509 CTCCTTGTTGACCTCACTC 58 Novel InUTR Rattus norvegicus 81 U1 ENSRNOG00000055945 ENSRNOT00000089465 1 1 1 60 4 182604749 182604769 CAGGGAGGTTCTATGATCAGG 60 182604709 182604730 TCCAAGTGACATGAATAAGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054654 ENSRNOT00000083454 3 1 1 65 9 69810245 69810264 TCTTCTAGTCTCCAGCAGAG 58 69810290 69810310 GATGGTCATAGGTCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052588 ENSRNOT00000078490 1 1 1 60 10 7630992 7631010 GAGAAGATTAGCATGGCCC 58 7630950 7630968 AAGATGGAACGCTTCACGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058757 ENSRNOT00000077951 2 1 1 60 4 125335507 125335526 TGACTGCTGTGTTACATGTG 59 125335466 125335484 ACTGAGTGCAGACATAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053414 ENSRNOT00000089256 3 1 1 60 4 168916190 168916208 CTGTTGTCATTTGCACCAG 58 168916229 168916250 AACACTGAGGATAGACATAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058233.1 ENSRNOG00000061389 ENSRNOT00000088254 1 1 1 80 7 105814717 105814739 AGATTTCACCTCACATGCG 58 105814782 105814801 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 Cyss ENSRNOG00000030857 ENSRNOT00000044345 3 1 1 80 3 144428559 144428579 TATGTTTGAAGACACAGGGTG 58 144427498 144428518 AAGAGCAGAATTCATGCTCC 58 Novel Rattus norvegicus 81 AC110837.1 ENSRNOG00000025375 ENSRNOT00000038663 3 1 1 65 1 165559995 165560013 AAAGTCAGCAGCTCAAGGA 59 165559946 165559966 GTAGGTCCTCTTCCCTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000052874 ENSRNOT00000089848 1 1 1 60 2 3008178 3008197 GTCACATGTGCATCAGTAGG 59 3008137 3008158 CAGAACACTGAACATAGTCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055824 ENSRNOT00000091726 3 1 1 66 1 62062238 62062259 GCAGCACATATACTAAGATTGG 57 62062193 62062211 GTGTCATGCTTGTTCAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060964 ENSRNOT00000082389 1 1 1 71 2 189956147 189956165 ATGAGGCTCATTCTGTGCT 59 189956094 189956113 ACAACACAATTATGCAGCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057581 ENSRNOT00000088692 1 1 1 60 17 27281030 27281051 CTCACTTTAGCAGCACATACAC 60 27281070 27281090 AAGAGCCATGCTAATCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103690863 ENSRNOG00000057644 ENSRNOT00000078311 2 1 1 138 X 64034782 64034802 AGAACTAGAAGTGGTGAACCT 59 64034590 64034682 ATGGCCAAGTTTCATTGGA 58 Novel Rattus norvegicus 81 AC104053.1 ENSRNOG00000057738 ENSRNOT00000082062 1 1 1 80 18 53051750 53051970 TCGGGACCACAGAAATAGC 60 53052015 53052033 TTCTGTTGCTTGGGTTCCT 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000058079 ENSRNOT00000087691 1 1 1 63 2 189938518 189938536 GATACAGAGGAGACCAGCG 59 189938560 189938581 GGTGACCATTTCATGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056165 ENSRNOT00000089183 3 1 1 60 2 210199376 210199397 CTGTTACATCATTGATTGCCAG 58 210199337 210199355 GGGATACTCGACTAGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114389.1 ENSRNOG00000053944 ENSRNOT00000082903 3 1 2 80 1 48321220 48321238 ATACCAGCAACAGCAACAG 59 48321280 48321931 TGACTGCTACTGTTTCATTGC 59 Novel Rattus norvegicus 81 AC105811.1 ENSRNOG00000052254 ENSRNOT00000084618 3 1 1 61 3 123810472 123810492 CAGTGTATAGAATGGTTGCCT 58 123810431 123810449 GTGAGCCTAGCCTTTAACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0663.2 ENSRNOG00000051216 ENSRNOT00000076358 2 1 1 60 X 65367912 65367930 TGCTTATCAGCTCCAGGTC 59 65367951 65367972 TAAGCACTCATATGAAGACAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC111319.3 ENSRNOG00000059489 ENSRNOT00000088343 2 1 1 104 9 71296252 71296272 CTGTATTACTCCAGCACTCAC 58 71296342 71296363 TCAAGTGACTGGTAACATACTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07016412.1 ENSRNOG00000051775 ENSRNOT00000088620 2 1 1 75 14 99672248 99672270 TATTAGCCATTCTGACTGGTG 58 99672306 99672325 ACATCCTTACTCATCAGGGA 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA70 ENSRNOG00000055511 ENSRNOT00000088008 3 1 1 60 14 60986980 60986999 GCAGACCCTTATACTAGCCG 60 60986939 60986957 GTATGCAGCTGTTGCACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096030.1 ENSRNOG00000018612 ENSRNOT00000025109 3 1 1 89 1 167918166 167918186 CACCACTCCTACTGTCACC 59 167918095 167918114 AGAGATCATGGCAGTCAGTC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000052288 ENSRNOT00000087816 3 1 1 61 14 43689396 43689417 CTAGAATTGGAACCATCCTGAG 58 43689437 43689457 TATTTGCATGGCTTCCTTGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Fendrr ENSRNOG00000051160 ENSRNOT00000076265 1 1 1 83 19 52996949 52996967 CTAAAGGAAGAGGCCTGGG 60 52995547 52995565 GTGTGGGAAATGGAAGCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006160.1 ENSRNOG00000017884 ENSRNOT00000024056 2 1 1 60 1 223549222 223549240 ACGGACAGTTAAAGTCCCT 58 223549180 223549198 TTGTTATCCAAGCGTAGCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054362.1 ENSRNOG00000050899 ENSRNOT00000043950 2 1 1 82 3 149960931 149960953 TACAGAAGGAGTGCTGTGC 60 149960867 149960886 CCTCTAAACTGGAACTCCGT 59 Novel Rattus norvegicus 81 SNORA36 ENSRNOG00000058610 ENSRNOT00000091228 1 1 1 60 2 101977087 101977106 TCAGTTCATGGAAACCTCTC 57 101977128 101977147 CTCAGCCAATTTCAATGACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061226 ENSRNOT00000079052 1 1 1 60 2 93815207 93815225 GTGCTTTCTTCAGCAACAC 58 93815248 93815267 GGCCATGTTACTGTTCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000055359 ENSRNOT00000080014 3 1 1 60 2 190324608 190324631 CTGTTGTTCTTATATCAGTCAGGG 59 190324647 190324668 CAAGCTAGGATGAACAAAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052508.1 ENSRNOG00000061770 ENSRNOT00000088345 3 1 1 98 3 58380159 58380177 AAGCTCAAGCAGCAATCAG 59 58380239 58380258 GACCTGGGATTCTGGACAC 60 Novel Rattus norvegicus 81 AABR07069969.1 ENSRNOG00000058583 ENSRNOT00000072787 2 1 1 65 8 43144309 43144333 CATGTCTTACCAGATTTACAGTTCC 60 43144266 43144284 ACTGATGCACAGAACACAG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000061566 ENSRNOT00000086649 3 1 1 60 14 26311812 26311836 CACTAGAGGATTACACATATGACTG 59 26311852 26311872 TCTACTCTTTGCCACCTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060533 ENSRNOT00000086638 3 1 1 60 14 27392175 27392197 GACAGAGGTTATATCTACGACGA 59 27392211 27392235 CCCTTCATTCAGTTATTGATAGCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000051865 ENSRNOT00000085969 3 1 1 60 2 148386107 148386125 GTCAGAAAGCTGGAGATGC 59 148386065 148386085 AACTTACCTATCCACTGCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD116 ENSRNOG00000059451 ENSRNOT00000087326 1 1 1 70 1 194988864 194988883 CCAGTCAAACATTCCTTGGA 58 194988813 194988831 ATTTCCGATGACAGTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052432 ENSRNOT00000090900 3 1 1 60 14 111469591 111469612 AAGGCTATGTCTATGTTCAGTG 58 111469552 111469571 TGTTTGGCTGCTAATCACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1407.1 ENSRNOG00000051446 ENSRNOT00000089630 1 1 1 80 7 142884370 142884820 TAAGCATGTAAGTCGGGTCC 60 142884862 142884881 ACCAGATTGTCCAAAGACCA 59 Novel Rattus norvegicus 81 AABR07061707.1 ENSRNOG00000052718 ENSRNOT00000079266 1 1 1 60 4 140503343 140503363 GTGGACCAAAGCTTATTACCT 58 140503303 140503321 AAGATGATGAAGTGGACCG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000054612 ENSRNOT00000084408 2 1 1 60 3 4094164 4094184 GTCACATTTGTGTCAGTAGGT 58 4094124 4094142 CAGAACACTGAGCGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054119.1 ENSRNOG00000056902 ENSRNOT00000081089 1 1 1 60 3 142094380 142094401 TGGGTAAGGTCTAAGAATTTGC 59 142094420 142094440 ATAAGTAGCTTCAGCATCACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057675.1 ENSRNOG00000054487 ENSRNOT00000088893 3 1 1 60 7 83682336 83701146 CTGCAAAGGAAACGATGGA 59 83682294 83682312 AAGACTTCATGGGCTGAGG 59 Novel DesignRelaxed Rattus norvegicus 81 Pramef20 ENSRNOG00000053942 ENSRNOT00000091592 2 1 1 86 5 162407718 162407736 TTAAGCTGGAAAGCCTCCA 59 162407786 162410506 TCTTCACAGACCCAAGCAG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059477 ENSRNOT00000081659 1 1 1 60 17 72214163 72214181 CAGTAGGTGGATGAGAGGG 59 72214202 72214223 AGATGTCCATAGGTCAGAACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050543.1 ENSRNOG00000052811 ENSRNOT00000085520 2 1 1 65 5 168845244 168845304 GCTGAAATCACCATCTTTGGA 59 168845331 168845349 CATAGCTCTTTGGACTCCG 58 Novel DesignNoJunction Rattus norvegicus 81 SCARNA4 ENSRNOG00000052086 ENSRNOT00000077866 2 1 1 60 3 129328783 129328803 AAGACTTTGCTGATACACTCC 58 129328743 129328763 TCTCCAATAAGGGCTACTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054586 ENSRNOT00000091998 1 1 1 60 14 7051626 7051644 CGAAGAGGATGACCTTCCC 60 7051667 7051686 TACTCGTATACCCTTGACCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054586 ENSRNOT00000091998 3 1 1 60 14 7051625 7051643 TCGAAGAGGATGACCTTCC 59 7051667 7051685 ACTCGTATACCCTTGACCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000048387 ENSRNOT00000074592 3 1 1 60 17 53916413 53916431 AGCTACGTAGGATCAAGCC 59 53916451 53916473 ACCAGATATTCACTGGTAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096804.1 ENSRNOG00000041549 ENSRNOT00000063302 2 1 1 60 17 80895534 80895552 TTTGCCTATCTGCCTTGTG 58 80895576 80895594 AGCTGTGAATGGAAGTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004101.1 ENSRNOG00000049002 ENSRNOT00000071114 3 1 1 66 1 125082651 125082669 TTATGACTTGCTCCTCCGG 59 125082603 125082621 TGAATGCTCTAGGCGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034111.1 ENSRNOG00000060133 ENSRNOT00000086671 2 1 1 132 11 53503596 53503615 AACACAACCACAACAAAGCA 60 53503477 53503495 TTTGCTGTGCATTCCTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AC128786.1 ENSRNOG00000050026 ENSRNOT00000071789 3 1 1 99 1 102284412 102284432 AGGTAGCAGCTAGAAGAAAGG 59 102284333 102284351 TCTAGAAGCTGCCCATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053266 ENSRNOT00000083648 2 1 1 61 3 171596235 171596254 GGACTCCAAATCAGAACGAC 59 171596278 171596296 TTTATGTCATCCTTGCGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097038.1 ENSRNOG00000059928 ENSRNOT00000081357 1 1 1 80 10 46183017 46183040 GTGATCAACTCTATCAGGACTC 58 46183084 46183103 GATGTTATTCTGTGGTGGCT 58 Novel Rattus norvegicus 81 AABR07056470.1 ENSRNOG00000058647 ENSRNOT00000078534 2 1 1 89 7 26440504 26457239 TGTGAAGACATACAATGCCC 58 26457288 26457309 GGGTTCATTGTCAGTATTCCAG 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000052117 ENSRNOT00000086797 1 1 1 66 2 75154175 75154193 TTATCCATTGCACTCCGGA 59 75154223 75154241 TATGCAGTCCAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.14 ENSRNOG00000050488 ENSRNOT00000075299 3 1 1 60 1 121219423 121219442 AGAGATCTGATCAGTCAGGC 59 121219382 121219405 GGTTATACCTAGGACAGATAAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060757 ENSRNOT00000080209 2 1 1 61 14 84034274 84034292 GAGAGGCTATGTCTACGCC 60 84034316 84034335 GCTAGGCCACTTAATCACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004876.1 ENSRNOG00000018083 ENSRNOT00000024338 2 1 1 60 1 164807640 164807661 AGGTAAAGTTCATGGTTCTCTG 58 164807681 164807700 CATCTTGGGAGTCTGACCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055158 ENSRNOT00000091183 3 1 1 86 1 84529973 84529994 GCAGCACATATACTAACATTGG 58 84529908 84529928 GGAAGGCTTCATGAATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055664 ENSRNOT00000083486 1 1 1 60 14 75953620 75953641 TCACATGTGATTTGTAAGTGGC 60 75953660 75953680 GTCAGAACACTGACTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035957 ENSRNOT00000054080 1 1 1 60 1 199087168 199087186 CTCTGAAGCTAAGCAGGGT 59 199087209 199087228 GTATTCCCAGGTAGTCTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000059051 ENSRNOT00000083185 1 1 1 60 1 257476008 257476028 ACAAAGCCCAGTTATACACAG 58 257476050 257476068 CTGCAATGGTTAGGAGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057948 ENSRNOT00000086874 2 1 1 64 1 200157736 200157754 GATCCCAGCAGTACATGCA 60 200157781 200157800 TTATCCTTGTACAGGGACCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057368 ENSRNOT00000078742 2 1 1 60 2 155475185 155475203 GGTGACAGAGATGACAGAG 57 155475143 155475163 ATTCAGATGTTCACAGGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061110 ENSRNOT00000078781 1 1 1 60 2 27725948 27725969 ATACAGAGAAGATTAGCAAGGG 58 27725909 27725930 TCCTAACTTAATAAGCTGCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054583 ENSRNOT00000079025 1 1 1 60 2 155488501 155488519 AGAGGCTAGGTCTATGCTC 58 155488459 155488482 GTTAGGCTACTAATCATTCAGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030798.2 ENSRNOG00000057734 ENSRNOT00000077158 2 1 1 81 10 104920767 104920786 CACCATTTCCCTATTACCGC 59 104918381 104920723 CTCCCAGGACTTGAACCTG 60 Novel Rattus norvegicus 81 Gpr3 ENSRNOG00000009540 ENSRNOT00000076866,ENSRNOT00000012710 3 2 2 60 5 151395955 151395975 TCTATCCACTCTCCAAGAACC 59 151395915 151395935 CCAAACACCATGAAGAAGACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015834.1 ENSRNOG00000048860 ENSRNOT00000075080 1 1 1 60 14 79200430 79200449 ATTAGTGATCAAGGGTGGGA 58 79200472 79200490 AAGACTATCAGCCCAGGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015834.1 ENSRNOG00000048860 ENSRNOT00000075080 2 1 1 60 14 79200430 79200450 ATTAGTGATCAAGGGTGGGAG 59 79200472 79200490 AAGACTATCAGCCCAGGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057242 ENSRNOT00000079970 3 1 1 60 1 58787414 58787436 GATACAGAGAAGATTAGCATGGC 59 58787456 58787474 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064048.1 ENSRNOG00000050810 ENSRNOT00000073963 3 1 1 82 6 62336615 62336635 ATCCCTGAAAGAATTCCAGGA 59 62336810 62336829 CGTGTTCTTTCTTGATTGCT 57 Novel DesignNoJunction Rattus norvegicus 81 SNORA24 ENSRNOG00000061349 ENSRNOT00000081921 2 1 1 60 2 84566330 84566352 CTTCTTAACACGAAAGACAGTCC 60 84566368 84566390 AGATAGCAGTTAGATGGTGATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056124 ENSRNOT00000085789 2 1 1 75 14 35163206 35163227 GCAGCATATACACTACGATTGG 59 35163263 35163281 TAAATTTGCATGCCCTGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017236.1 ENSRNOG00000057837 ENSRNOT00000092092 1 1 1 80 15 18941506 18941526 GACACAAGTGCTATGCTACAG 59 18941566 18949307 TGTGTTCTTTGCATACCTTCG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000055219 ENSRNOT00000089621 1 1 1 60 1 90959690 90959710 AGACAAGCTATGGATAGTCCC 59 90959650 90959668 TACACATGCCCACATAAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056767.1 ENSRNOG00000058819 ENSRNOT00000088769 1 1 1 80 7 40405588 40405610 AGATTTCACCTCACATGCG 58 40405653 40405672 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000061103 ENSRNOT00000089096 2 1 1 60 4 114258267 114258285 GTAGACAAGCTACTGTGCC 58 114258225 114258245 TGAGTGTAAACATAGCCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Kdm5d ENSRNOG00000060496 ENSRNOT00000086056 1 1 1 80 Y 573366 573384 GGTCTTGTCTGCCTTTCTC 58 573428 573524 CAATGTGTACCTGTACCGT 57 Novel Rattus norvegicus 81 AC240408.1 ENSRNOG00000060553 ENSRNOT00000083719 2 1 1 62 Y 1590139 1590157 CAAGAAGTTAGACCGCAGG 58 1590093 1590113 TCTTTGTTTAGCTCTGAACCC 58 Novel DesignNoJunction Rattus norvegicus 81 U4 ENSRNOG00000060428 ENSRNOT00000092221 3 1 1 80 2 4843189 4843210 CCAATGAAGTTTATCTGAGGCA 59 4843251 4843269 TTTGAGAAGATCCCTGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058145 ENSRNOT00000085737 2 1 1 60 1 84797475 84797494 GCTCTGTTGTAGAGGATGAC 58 84797434 84797452 ATACCCTTGACCGAAGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054684 ENSRNOT00000084972 3 1 1 60 5 91360494 91360512 GTGTCAGTAGGTGGCAGAG 60 91360535 91360554 GTTCAAGGATCAGAACGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067760.1 ENSRNOG00000051624 ENSRNOT00000082300 3 1 1 87 9 61692309 61694020 GAAAGGAAAGGGTGGAGAG 58 61694071 61694089 TACTACTTTGGTGCCTCCA 58 Novel Rattus norvegicus 81 AABR07052559.1 ENSRNOG00000053144 ENSRNOT00000086887 1 1 1 60 3 61635908 61635926 CCTCAGAACTCCAAGTCCA 59 61635866 61635885 GGCTCAAACACTTGATGGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA74 ENSRNOG00000058995 ENSRNOT00000082932 1 1 1 60 2 2478791 2478811 CTACCTAGGTTTCCTTGTACC 57 2478751 2478769 CTATTGGCTGCTGTTCTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005633.1 ENSRNOG00000055297 ENSRNOT00000084934 2 1 1 60 1 190671981 190671999 TTCCTGGACGAGAACTCTG 59 190672023 190672041 GAGTTCTAGGTTGCACACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07024877.1 ENSRNOG00000058038 ENSRNOT00000083254 1 1 1 80 16 20640689 20640707 CATCACTCTGCATCCATCC 58 20639812 20640285 CTGTCAGCTTTCTTCTCACC 59 Novel Rattus norvegicus 81 AABR07041451.1 ENSRNOG00000051727 ENSRNOT00000085657 3 1 1 77 X 130618107 130618125 TCTTTCTCCACATCCTCGC 60 130618167 130618186 GATTTCACCTCACACCACTG 59 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000046938 ENSRNOT00000075492 2 1 1 60 14 91220556 91220576 TCAGAAGCTATACAGGGTCAG 59 91220597 91220616 AATGACGCCTCTTCTCTTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056353 ENSRNOT00000082195 1 1 1 60 1 88671687 88671705 GAGAAGATTAGCATGGCCC 58 88671645 88671663 AATATGCAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056353 ENSRNOT00000082195 2 1 1 60 1 88671690 88671712 CGATACAGAGAAGATTAGCATGG 59 88671652 88671670 AACGCTTCACGAATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054691 ENSRNOT00000088249 3 1 1 85 14 48886934 48886952 TCCTGGCAAAGAACATGTC 58 48886867 48886887 CCACTACCACAAATTATGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Prdm16 ENSRNOG00000045913 ENSRNOT00000077015,ENSRNOT00000071280,ENSRNOT00000072059,ENSRNOT00000076044 2 4 4 80 5 171673917 171680072 CCATACAGGTGCAAGTACTG 58 171673856 171673876 TTTGTTGTGGATGTTCCTCAC 59 Novel Rattus norvegicus 81 Prdm16 ENSRNOG00000045913 ENSRNOT00000077015,ENSRNOT00000071280,ENSRNOT00000072059,ENSRNOT00000076044 3 4 4 80 5 171690750 171690768 AAGACCTTTGCCACATCCT 59 171687438 171690708 GCAGACCTCACATATGAATGG 59 Novel Rattus norvegicus 81 AABR07014804.1 ENSRNOG00000024829 ENSRNOT00000039626 3 1 1 60 14 32258094 32258114 TGCTTCCTGGAATACTAAGTC 57 32258135 32258154 GCTAACTTTCTAAGGCTCGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057890 ENSRNOT00000087419 1 1 1 78 1 27723226 27723244 ATGAGGTTTATCCGAGGCG 60 27723285 27723304 TGATTATTGTCCAAGGGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000057537 ENSRNOT00000092149 1 1 1 60 14 86882094 86882112 CAAACTCTGCTGCTCATGG 59 86882052 86882072 ACCAAACTTATCCCTAGGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044838 ENSRNOT00000070105 1 1 1 60 10 27204908 27204932 GCTGATATCATCTGATCTTGAAAGG 60 27204872 27204893 TCCAATTCAAGTACAAACCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003264.1 ENSRNOG00000058252 ENSRNOT00000080576 3 1 1 72 1 103053079 103053097 CATGGGCACATTTCCAGAG 59 103053633 103053651 CTTGTTCTCCCGAACAGAC 58 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000035103 ENSRNOT00000053226 3 1 1 60 12 42025734 42025752 CCCGATCTTGTCTGATCTC 57 42025692 42025712 TCCCATCCAAGTACTAACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053173 ENSRNOT00000091876 3 1 1 60 14 33899773 33899794 ATACAGAGAAGATTAGCATGGC 58 33899734 33899753 TGGAAGCTTCACGAATTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000060445 ENSRNOT00000086699 3 1 1 67 6 75620197 75620215 TTATCCATTGCACTCCGGA 59 75620148 75620166 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002870.1 ENSRNOG00000051494 ENSRNOT00000089385 1 1 1 94 1 87734826 87734844 AGCTGTTCTCCTTGTTGGA 59 87732167 87734773 CTGAGAACTGAAATCTATGTCTGG 59 Novel InUTR Rattus norvegicus 81 SNORA44 ENSRNOG00000053569 ENSRNOT00000079288 3 1 1 61 10 47586477 47586495 AGAGACTTTGACAGCCCAG 59 47586518 47586538 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000056513 ENSRNOT00000091585 2 1 1 60 2 128817935 128817953 GATGAAGAACGCAGCTAGC 59 128817976 128817995 GTCCATGATCAATGTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053504.1 ENSRNOG00000031161 ENSRNOT00000043677 1 1 1 60 3 111299055 111299075 ATTGAGCAGAGACAAAGACAG 58 111299095 111299115 GACATCTGAATGGCTCATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Kmt2b ENSRNOG00000055525 ENSRNOT00000080842 2 1 1 80 1 89034201 89034683 CTCTATGAGAAAGGGAACTACTG 58 89034143 89034161 ACACTGCATCATCTTGCTC 58 Novel Rattus norvegicus 81 Rn60_X_0739.1 ENSRNOG00000051360 ENSRNOT00000076498 1 1 1 80 X 73005122 73005140 TTCCTCCAAGAAGGGATGG 59 73005572 73008818 CATTGCTAAGGTGAGCTCC 58 Novel Rattus norvegicus 81 AABR07042629.1 ENSRNOG00000055757 ENSRNOT00000089516 1 1 1 61 19 426227 427418 GAGATCCAAGAACAACAGGG 58 427436 427460 CCAGGTCTTCATAATATGGATTTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07017604.1 ENSRNOG00000054270 ENSRNOT00000085162 1 1 1 78 15 29157491 29157509 TTCACTAGTGCTCCTGTGG 59 29157738 29157756 AATGAGGGATTCTGGGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035260.1 ENSRNOG00000047251 ENSRNOT00000074111 3 1 1 60 12 8874005 8874025 CTGAACTCAGAGATTTGCCTG 59 8873965 8873984 GTAGCACACGCCTTTAATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014524.1 ENSRNOG00000055589 ENSRNOT00000079822 2 1 1 80 14 19281748 19281768 GCAAACAGCATTTGTTGGAC 59 19281813 19281832 GTCATCTTCTGAAGAGGCGT 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055303 ENSRNOT00000084489 1 1 1 60 3 103099597 103099617 GACATTGTAGATGTGGTTGCT 59 103099638 103099657 ATACTCTCCTTTCTGCCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017768.6 ENSRNOG00000059778 ENSRNOT00000088305 1 1 1 80 15 30841196 30841386 AGATTTGCTGGGTGAGAGG 59 30841429 30841448 TCAGAACAGAACTGGTTCCC 60 Novel Rattus norvegicus 81 AABR07017825.6 ENSRNOG00000061036 ENSRNOT00000089506 1 1 1 80 15 31447027 31447216 GATTTGCTGGGTGAGAGGA 59 31447258 31447278 CTCAGAGAAGAATTGGTTCCC 58 Novel Rattus norvegicus 81 AABR07013073.1 ENSRNOG00000048332 ENSRNOT00000073342 1 1 1 60 2 221659041 221659062 CAGTTTCTTTGGGACACTTCTC 60 221659083 221659101 AGACTCATCCCAAAGGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013073.1 ENSRNOG00000048332 ENSRNOT00000073342 2 1 1 60 2 221659043 221659063 GTTTCTTTGGGACACTTCTCC 59 221659085 221659103 TGAGACTCATCCCAAAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049760.1 ENSRNOG00000044644 ENSRNOT00000069911 2 1 1 63 5 136425932 136425951 TTGTGTTAGTGTGGATGGTG 58 136425977 136425995 TTGTGCTCTGCTTATGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056695 ENSRNOT00000081071 2 1 1 60 1 228358059 228358078 AAAGAGACTACGGTTCATGC 58 228358018 228358036 AAGCTGTGCATTGTTCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC686683 ENSRNOG00000049888 ENSRNOT00000075650 1 1 1 60 3 76186398 76186417 GCACACTCCTTATCATCCTC 58 76186357 76186376 CGCATCTTCAGAATTGTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC686683 ENSRNOG00000049888 ENSRNOT00000075650 2 1 1 60 3 76186797 76186817 ATTGTTGCTCCAAAGATGCTG 60 76186757 76186780 CTACAAATGATATGGTTCTGTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029732.1 ENSRNOG00000054498 ENSRNOT00000092113 1 1 1 80 10 48498088 48498109 TGTGGAGCCAGCTATAAGC 60 48498153 48498171 ACAGATGTCCAGGCATCTG 60 Novel Rattus norvegicus 81 AABR07061077.1 ENSRNOG00000058738 ENSRNOT00000086523 3 1 1 60 4 103636474 103636492 GTCTCCTCAGCTTCTGACC 60 103636432 103636451 GAACCTGTCTGAGACTCCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021204.1 ENSRNOG00000055008 ENSRNOT00000082129 1 1 1 80 13 60619435 60619453 CTTCCAACTGCTACTGCTG 59 60619491 60619515 CCAAAGTATGAGTAGTCTATTCTGG 59 Novel DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 AABR07051996.1 ENSRNOG00000033278 ENSRNOT00000041305 3 1 1 60 3 31803185 31803204 CAGATGAGGCACCTAAAGAC 58 31803226 31803245 TTGTTCCTTCACGGAATCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000222.1 ENSRNOG00000014431 ENSRNOT00000019345 1 1 1 60 1 5238661 5238680 ATCGCATTGCTATACCTGAG 58 5238620 5238638 ATGAACTGTTCCTCTGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA31 ENSRNOG00000058048 ENSRNOT00000082128 1 1 1 60 1 6038653 6038672 CTAGGATGCAGAGGAAACCA 59 6038692 6038713 CATCAATCTGGACCACAAAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041963.1 ENSRNOG00000026379 ENSRNOT00000037031 3 1 1 80 X 144318970 144318989 ACTATTTCTCTGCAGCACAC 58 144319031 144319052 CAATGCACCTATGAAAGCTG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000054084 ENSRNOT00000085455 2 1 1 60 6 64927232 64927253 ATACAGAGAAGATTAGCATGGC 58 64927193 64927212 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054084 ENSRNOT00000085455 3 1 1 60 6 64927233 64927255 CGATACAGAGAAGATTAGCATGG 59 64927195 64927213 AATGCTTCACGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056986 ENSRNOT00000082922 3 1 1 60 1 136498027 136498045 TGTGAGTGTCCCTTTCCTC 59 136497985 136498004 TAAGTGTACAGCTTTGGGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA5 ENSRNOG00000058027 ENSRNOT00000082817 2 1 1 65 2 198849059 198849077 CAAGTTCTGCTGCTCATGG 59 198849012 198849030 TCTGCAGCCAAACTTATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004497.1 ENSRNOG00000041552 ENSRNOT00000063305 2 1 1 65 1 146824854 146824877 GACATTGGAAGAAAGAAGACTCTC 60 146824812 146824830 CTAGCAGTCACTCAGTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056170 ENSRNOT00000086983 2 1 1 60 6 108384365 108384387 GGAACGATACAGAGAAGATTAGC 59 108384327 108384345 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042077.1 ENSRNOG00000002734 ENSRNOT00000003664 1 1 1 62 X 147586539 147586560 TCTACCCGAATACATTCGTG 57 147586496 147586517 GCTTATTATTTCCCAGATGCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07017737.1 ENSRNOG00000059001 ENSRNOT00000085402 3 1 1 77 15 30440792 30440810 TTCACTAGTGGTCCTGTGG 59 30441022 30441041 ATGAGTGATTCTGGGCTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 LOC103690910 ENSRNOG00000052269 ENSRNOT00000086405 3 1 1 65 X 139329785 139329803 AGAAGTATGAAGCCCTGGC 60 139329738 139329759 CGGAATAGTTTCTCATTTCACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053866.1 ENSRNOG00000051005 ENSRNOT00000072407 3 1 1 89 3 131531514 131531533 CGGTCGAGATCAAGAAAGGA 60 131531438 131531461 TCTTGTTAAACCGTTCACCG 59 Novel Rattus norvegicus 81 U6atac ENSRNOG00000054887 ENSRNOT00000079831 1 1 1 60 2 211289749 211289767 GAAGGAGGGAAGGTTAGCA 59 211289791 211289809 GTTGTTAGGCTCAAGGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000053512 ENSRNOT00000080126 1 1 1 60 1 200218107 200218127 AACATGCTACAGTGATGAAGG 58 200218067 200218088 CTACTCAACCTCTACTGTAAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000051900 ENSRNOT00000090075 2 1 1 60 9 82874026 82874047 AAGTGGCTATTTCTACACTCAG 58 82874066 82874086 GGCTACAAACCATTCTTAGTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055373 ENSRNOT00000091564 2 1 1 99 5 133927451 133927469 TGTCTTTCCCAGGACAAGG 59 133927370 133927392 GAGGAGAACATGAACATAATCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363178 ENSRNOG00000043375 ENSRNOT00000085178,ENSRNOT00000021288 2 2 2 94 2 208550252 208550271 TTTGTGTACTGATTAGCGGG 58 208550328 208550854 TTTGCCAGTAACTCCTCTG 57 Novel Rattus norvegicus 81 AABR07050116.1 ENSRNOG00000056863 ENSRNOT00000081107 1 1 1 60 5 152070703 152070723 CTCATCGACTTACACAGTCCT 59 152070663 152070687 GCTCAATACTGATGGAAGTAATCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017812.1 ENSRNOG00000057587 ENSRNOT00000081826 2 1 1 80 15 31282081 31282280 GGCTCCAATTAAACTGGGT 58 31282324 31282342 CTATGGATCCCTCTGGGAC 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000054622 ENSRNOT00000079029 1 1 1 60 1 241873529 241873547 GAGAAGATTAGCATGGCCC 58 241873487 241873505 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060321 ENSRNOT00000084828 1 1 1 67 1 189016567 189016585 GTGTCAGTAGGTGGCAGAG 60 189016518 189016536 ATTCAGATGTTCGCAGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051526 ENSRNOT00000084524 2 1 1 60 6 67112896 67112916 TTGACTTGAATGGTCTGACTG 58 67112936 67112956 TAGCTAGAACAGTGAGTGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC129054.1 ENSRNOG00000048460 ENSRNOT00000073887 1 1 1 90 10 12565030 12565048 ACATTGTGGAGCATGTGTC 59 12562659 12564976 ATTGAGCTACCTGAGGACC 59 Novel Rattus norvegicus 81 Rn60_10_0635.1 ENSRNOG00000051188 ENSRNOT00000075897 3 1 1 60 10 64592953 64592971 TGGCTACTGTCACTCAAGG 59 64592911 64592931 AATGTGCCTCTACCTACACTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058615 ENSRNOT00000085421 2 1 1 60 1 197983400 197983420 GTAAGATTAGTATGGGCCCAG 58 197983360 197983379 AAATACGGAATGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062599.1 ENSRNOG00000036912 ENSRNOT00000055436 3 1 1 64 4 183941460 183941480 AGAAGGATCCTGGAGAGCA 60 183941506 183941526 GGATGATACTGCTTCAGACTC 58 Novel DesignNoJunction Rattus norvegicus 81 ENSRNOG00000042445 ENSRNOT00000035001 2 1 1 80 10 104442162 104442332 AGATCGGCTTCATCGAGAC 59 104442376 104442394 CCAGCTTACTGACCCTCAG 60 Novel Rattus norvegicus 81 Rn60_2_2279.3 ENSRNOG00000048272 ENSRNOT00000076304,ENSRNOT00000075256 1 2 2 93 2 208392614 208392632 TTGTGTACTGATTAGCGGG 57 208392689 208393215 TTTGCCAGTAACTCCTCTG 57 Novel Rattus norvegicus 81 Rn60_2_2279.3 ENSRNOG00000048272 ENSRNOT00000076304,ENSRNOT00000075256 3 2 2 96 2 208392611 208392630 CGTTTGTGTACTGATTAGCG 57 208392689 208393215 TTTGCCAGTAACTCCTCTG 57 Novel Rattus norvegicus 81 SNORA44 ENSRNOG00000061214 ENSRNOT00000088452 2 1 1 60 5 150492171 150492189 GAGACTTTGACAGCCAGGT 60 150492211 150492231 CATATAGGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050149.1 ENSRNOG00000047722 ENSRNOT00000073375 3 1 1 60 5 153549762 153549780 GCCTTGAACTCAGAGATCC 58 153549720 153549739 ACACATCCCTTTAATCCCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017841.2 ENSRNOG00000060250 ENSRNOT00000082666 3 1 1 93 15 31769884 31770682 TACCTCAGAGGAACAAGCA 58 31769499 31769520 CTTGTTGTAAGAATCCTGACGA 59 Novel Rattus norvegicus 81 SNORA63 ENSRNOG00000051501 ENSRNOT00000090781 3 1 1 60 14 107604183 107604203 AAATACATCACCATCTCTGCC 58 107604222 107604243 GTTAGAAACCAAGTGTCTCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000058179 ENSRNOT00000085773 1 1 1 60 5 74897199 74897217 AGTTCTGGGCTGTAGTGTG 59 74897157 74897178 CATATTGATGCCGAACTTAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA27 ENSRNOG00000061144 ENSRNOT00000083541 3 1 1 60 14 36664778 36664798 AGAAGGGTAAAGGAAGTCTCC 59 36664738 36664756 GATCCAAAGAGGAGGTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000055601 ENSRNOT00000079706 2 1 1 84 14 56859573 56859591 GAGTTTATCCGAGGCACGA 60 56859507 56859530 CTCAAAGAGAATCAGTAGTCTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061473 ENSRNOT00000088973 1 1 1 60 14 41243127 41243147 GTGGTGGCTATGTTACATGAG 59 41243168 41243187 AGCATAAGATACAACCGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055615 ENSRNOT00000085884 3 1 1 63 2 32319588 32319609 GAACGATACAGAGAAGATTTGC 58 32319546 32319566 GGAACTTAACAGATTTGCGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141573.1 ENSRNOG00000057637 ENSRNOT00000091017 3 1 1 106 4 84591288 84591308 GTCTTACCTTCCCGAGCTG 60 84591200 84591218 AACGTTAGGGACCATGAGC 60 Novel Rattus norvegicus 81 AABR07068030.1 ENSRNOG00000055318 ENSRNOT00000086984 2 1 1 92 9 78295401 78295421 TCCGCTTTCTACTGCTCAC 60 78295327 78295345 GATGCCAATTCTTGGTGGC 60 Novel Rattus norvegicus 81 AABR07061459.1 ENSRNOG00000052174 ENSRNOT00000080234 2 1 1 60 4 126071146 126071167 ACAACATAGAGAAGGATATCGC 58 126071107 126071129 GGGTTGTACTTCTTGTCAAACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060963.1 ENSRNOG00000055428 ENSRNOT00000087773 3 1 1 60 4 101883017 101883038 GTTTCTTGGGTTATTGATGCTC 58 101883169 101883187 CTGGGTCATCTGAATGTCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058116.1 ENSRNOG00000004906 ENSRNOT00000006506 2 1 1 60 7 100701554 100701572 TGGTCAGACACTTCAAGGA 58 100701595 100701614 CTTCTGCTTGAGGAATTGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025048.2 ENSRNOG00000057966 ENSRNOT00000079010 1 1 1 85 16 26499896 26518824 GAATGAAGATGAGGACCTCCA 59 26518871 26518889 TGTGTTCTTCCTCTGAGCA 59 Novel Rattus norvegicus 81 AABR07017783.4 ENSRNOG00000060016 ENSRNOT00000090250 1 1 1 60 15 31051443 31051461 GGTCACTCTCACAGAGCAG 60 31051481 31051503 TGAGTAAGTAGTCTGATAGGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017783.4 ENSRNOG00000060016 ENSRNOT00000090250 3 1 1 60 15 31051527 31051546 GCAATATCTCAATGAAGCCC 57 31051568 31051587 GATCCTCTTGTTGTCTGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028886.2 ENSRNOG00000054681 ENSRNOT00000091830 2 1 1 82 17 89773062 89775070 GACTCACAGAGGAGAAATTCTC 58 89773001 89773021 GCACCTTGTTGAAGAATAAGG 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000057006 ENSRNOT00000081414 2 1 1 60 13 34536476 34536496 AGAACTTCAAGACACTGAGGA 59 34536436 34536456 GGGAGATCTTTCCATCTTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021584.1 ENSRNOG00000041572 ENSRNOT00000063325 2 1 1 60 13 79425262 79425282 ATTGGAAGAAAGCAGATGCTC 59 79425222 79425240 AGCAGTTGCTCAATCTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053853 ENSRNOT00000085219 2 1 1 60 1 235254000 235254020 CTAGAAAGTGTGACTTCAGCC 59 235253960 235253982 CTTTCAAGACCCTGTAAATGGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017634.1 ENSRNOG00000055402 ENSRNOT00000082901 2 1 1 107 15 29446163 29446181 CAGAAATGCAGTGCCTGAG 59 29402556 29402574 ACTTTGTTTCACCTGCTGC 59 Novel DesignNoJunction, InUTR Rattus norvegicus 81 AABR07017634.1 ENSRNOG00000055402 ENSRNOT00000082901 3 1 1 108 15 29446165 29446183 ATCAGAAATGCAGTGCCTG 59 29402557 29402575 CTTTGTTTCACCTGCTGCT 59 Novel DesignNoJunction, InUTR Rattus norvegicus 81 AABR07048059.1 ENSRNOG00000060049 ENSRNOT00000082554 2 1 1 60 5 58917740 58917758 TTCTCACTCCCAGGAAGAC 58 58917698 58917719 AAAGACAGAAACATCTGCATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048059.1 ENSRNOG00000060049 ENSRNOT00000082554 3 1 1 60 5 58917472 58917490 CAACCACTTCACCTGTGAG 58 58917430 58917449 GATGGAGATATCAGCACAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC123185.2 ENSRNOG00000055266 ENSRNOT00000090037 3 1 1 80 15 108869255 108869276 GAAAGATACACCGATCCACAC 59 108869195 108869215 GTCTGTTTCCTCTATGCTGTG 59 Novel Rattus norvegicus 81 SNORA48 ENSRNOG00000058881 ENSRNOT00000083445 2 1 1 60 9 66499222 66499243 TGTGGTGTTGTTCTTACATCAG 59 66499263 66499282 CTAGGATGAACAAAGGACGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057428 ENSRNOT00000087881 3 1 1 61 5 128142862 128142880 ACACGGAAGATTAGCATGG 58 128142819 128142837 ATGTAGACTGCTTCACGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054431 ENSRNOT00000090058 1 1 1 60 10 4544604 4544623 TGCACTTGGAGTTTGTTGAC 59 4544645 4544664 AGTATGCAGTTGTGTTTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021736.1 ENSRNOG00000034300 ENSRNOT00000048823 1 1 1 60 13 88782109 88782127 TGGGTTCACATTGTTGGAG 58 88782146 88782169 CAAACTTATAGGCAGTAGCAAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0743.1 ENSRNOG00000027907 ENSRNOT00000083333,ENSRNOT00000085393 2 2 4 62 X 73460259 73460279 AGAAAGACGGGAGTACTTCAG 59 73460868 73460889 CATCTTGAGTTAATGGAGTCCT 58 Novel DesignNoJunction Rattus norvegicus 81 U2 ENSRNOG00000053758 ENSRNOT00000078165 1 1 1 60 3 58061417 58061435 GTTGGATTAGGAGCTTGCT 58 58061459 58061477 TTCCTGGAGGTGCAATACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059142.1 ENSRNOG00000059626 ENSRNOT00000089919 3 1 1 170 4 4690128 4690146 AGGACGTAAGAGCATCGTG 60 4689973 4689991 TCTTGGTGACTGAGCTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 U6atac ENSRNOG00000056866 ENSRNOT00000080054 3 1 1 60 10 76580408 76580426 TTGACAAGAGCCTAAAGCA 57 76580366 76580384 GTAGATGCCACAAAGTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045206 ENSRNOT00000070473 1 1 1 60 6 121316005 121316029 CCACCCTTAACATACTTAGTTTCAG 60 121315969 121315988 TATCCAAGCACTAGCCAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000060385 ENSRNOT00000079851 3 1 1 60 7 140139267 140139285 AGCTGTTGGTTTCAAGCAG 59 140139225 140139243 TGAAATGGCCAACAGACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065498.1 ENSRNOG00000051719 ENSRNOT00000079807 1 1 1 80 6 132131058 132149972 GCCAAAGGAACACATTATCCC 60 132130998 132131018 GAGTTTGTCACCATCCAACAG 60 Novel Rattus norvegicus 81 AABR07053968.1 ENSRNOG00000060762 ENSRNOT00000084221 3 1 1 60 3 133894433 133894451 TCCATCCTCATACTCGCTG 59 133894391 133894410 TTCCCTATGACCATATGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000051641 ENSRNOT00000077515 1 1 1 60 14 17256595 17256616 CTCAAACACGCATGTAATTGAG 59 17256556 17256575 TAAAGGCAGTGGTTTGATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051524 ENSRNOT00000081608 1 1 1 60 5 165257908 165257926 AGGAGTTCAAAGGCTGAGG 59 165257866 165257884 GGGAAATCACAGGGATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056256 ENSRNOT00000080659 2 1 1 60 10 89539678 89539696 AGTTGGAATAGGAGCTTGC 58 89539720 89539738 TGGAGGTACTGCAATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014882.1 ENSRNOG00000057975 ENSRNOT00000088178 2 1 1 83 14 35776280 35776298 CTGTCCTCACCTCTTGCTC 60 35776214 35776235 CCTTCCATCTCTGAAGAACCA 60 Novel Rattus norvegicus 81 AC095695.2 ENSRNOG00000056638 ENSRNOT00000085180 3 1 1 61 10 57676001 57676020 AGATGGCTCGTGGTTAAGAG 60 57675959 57675977 TGCTGGGAATTGAACTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050005 ENSRNOT00000072876 1 1 1 60 5 57678078 57678097 GCCAAATCTCACCTGATCTC 59 57678118 57678138 TCCCATTCCAAGTACTAACCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ACEA_U3 ENSRNOG00000059657 ENSRNOT00000080495 2 1 1 60 10 74778222 74778245 CGTTACTAGAGAAGTTTCTCTGAC 59 74778264 74778282 CTATGTCTCGTCCTCGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021691.1 ENSRNOG00000050010 ENSRNOT00000075743 2 1 1 60 13 85672649 85672667 GACTCTTGTTACAAGCGCA 59 85672607 85672626 AGAAATGCAGAATCTCAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052410 ENSRNOT00000087205 3 1 1 60 5 72315312 72315333 GTGTCACATGTGCATTAGTAGG 60 72315273 72315294 GAACACTGAGCATAGACATAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000051511 ENSRNOT00000088496 3 1 1 60 5 147585658 147585677 TTAAGTCAACCAGGAAGGTC 57 147585700 147585718 CCATCTGCAACAATTGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053385 ENSRNOT00000089764 1 1 1 60 13 66603958 66603981 CTATGTCACATGTAGGTAGTAGAG 58 66603921 66603939 CATCAGGTGTTCAGAGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA4 ENSRNOG00000055592 ENSRNOT00000085844 2 1 1 60 10 104714041 104714060 AAGACTCTGCCGATACACTC 59 104714000 104714018 TTCTCAGTAAGGGCTGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000053018 ENSRNOT00000078983 2 1 1 61 10 37419644 37419663 AAACCCAGGATTCTTTCCTC 58 37419687 37419705 CAAAGAGGCTGTTGTCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD77 ENSRNOG00000060075 ENSRNOT00000085413 2 1 1 60 13 78854986 78855007 ATAACATAGTTCAGCAGACGTG 59 78855026 78855046 CATCAGATAGGAGCGAAAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057353.2 ENSRNOG00000056727 ENSRNOT00000088206 3 1 1 61 7 67116748 67116766 GTCTCAGGATGAGGTGGAG 59 67116705 67116723 CCTTGAGGATGAGGATGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058985 ENSRNOT00000083032 1 1 1 60 13 109802204 109802224 GGATGTGAGTGTAATCTTGCT 58 109802245 109802264 CAGAACAAACCCTGTCAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002564.1 ENSRNOG00000022227 ENSRNOT00000029823 3 1 1 60 1 77111796 77111817 GCATCCTTAACTGAGAATGAGC 60 77111836 77111856 AGTTCAAGTCCAACTTGACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052295 ENSRNOT00000088285 2 1 1 61 3 38037665 38037683 GGCTACTGTGTCACATGTG 59 38037706 38037726 TGAGTGTAGACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054397 ENSRNOT00000078253 1 1 1 61 6 125593233 125593251 GTGCTTACTTCAGCAGCAC 60 125593276 125593294 TAAGGGCCATCCTGATCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056909 ENSRNOT00000091047 3 1 1 60 19 18783409 18783428 TGACTACTGTGTCACTTGTG 58 18783447 18783469 GGATATAGACATAGCCTTCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002893.1 ENSRNOG00000056062 ENSRNOT00000087232 2 1 1 95 1 88516036 88516054 CAGCTGTTCTCCTTGTTGG 59 88513376 88515982 CTGAGAACTGAAATCTATGTCTGG 59 Novel InUTR Rattus norvegicus 81 SNORA17 ENSRNOG00000059409 ENSRNOT00000082220 1 1 1 60 6 100876911 100876931 CTCCTTTACAATGTGCATGAG 57 100876871 100876894 TACTGAGCATAGACATAGACTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000060816 ENSRNOT00000083744 1 1 1 60 10 56274149 56274167 TGTAGGCCTTTGTTCATCC 57 56274107 56274125 AGGCATGAAACAGCTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000060816 ENSRNOT00000083744 3 1 1 60 10 56274179 56274201 GTGTTGTTCCTATATCAGTCAGG 59 56274141 56274161 TCAAGCTAGGATGAACAAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059617 ENSRNOT00000086312 1 1 1 60 10 106084726 106084748 TCAGTCAAGGGTATATGAGTAGC 59 106084768 106084786 CTTGAGAGCTTGTCAGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD47 ENSRNOG00000057278 ENSRNOT00000078298 2 1 1 60 13 78855392 78855411 AGTGATGTGATGATTCTGCC 58 78855431 78855452 AAATGGAACGGTTGTAAAGGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034350 ENSRNOT00000052473 2 1 1 60 7 128122505 128122523 CCCGATCTTGTCTGATCTC 57 128122543 128122565 CATCTTCTAAGTAATGACCAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000055731 ENSRNOT00000088894 2 1 1 60 1 221848827 221848846 CTCTGAATGCAGCCAATGTC 60 221848786 221848805 GTTGTAACTAGCCACACCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058826 ENSRNOT00000088154 2 1 1 60 1 270022459 270022477 CCCACATGTTTCTCTTCCT 57 270022417 270022436 TCTTGTAAAGAAGGCTGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA22 ENSRNOG00000060097 ENSRNOT00000091851 3 1 1 61 18 70372886 70372904 TAGTTCCCTTGGCCTTGAC 59 70372927 70372947 CAGTACTTTCAATGCAGAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056569 ENSRNOT00000090068 2 1 1 60 13 183427 183449 CGATACAGAGAAGATTAGCATGG 59 183469 183487 AACGCTTCACAAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052711 ENSRNOT00000085261 3 1 1 60 10 103384176 103384196 CTAGTTGAAGATGACCTTCCC 58 103384218 103384236 GCTTGTGTAAGCTTGACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoMBII-202 ENSRNOG00000054310 ENSRNOT00000078041 3 1 1 74 19 55918127 55918145 ATGACATTCTCCGGAATCG 57 55918183 55918201 AAAGCTCGTAGTCAGATGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058325 ENSRNOT00000077946 3 1 1 60 18 78635401 78635420 TTCTGAAATTGGACCGACAC 59 78635441 78635461 GTGTACATCATCCTTGCTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061078 ENSRNOT00000077825 2 1 1 74 13 109990798 109990816 TGTGTTTCACTCCAGACGT 59 109990742 109990760 TTAGGAGAGCACAGTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000059492 ENSRNOT00000088689 2 1 1 90 1 60884984 60885543 GTCTCCCTGGGAATGACAC 60 60885596 60885615 TTATTGCCTCACTCTCCACG 60 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000034421 ENSRNOT00000052544 1 1 1 60 7 56875560 56875581 GCACCTGATCTTGTCTAATCTC 59 56875521 56875539 CCATCCAAGTCCTAACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059935 ENSRNOT00000077680 3 1 1 60 18 25084099 25084118 TGTTGATTCAGCTGAACTGG 59 25084140 25084159 CACAGATCAGTGAAGGAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049541.1 ENSRNOG00000052771 ENSRNOT00000080647 1 1 1 89 5 127755630 127755795 TGGGAACTGGATAGAAAGGA 58 127755953 127755973 GGTGATTAAGAAGAGACCAGC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000060766 ENSRNOT00000088684 2 1 1 60 18 31515548 31515566 TTGAACCCACCCTGATAGC 59 31515588 31515608 AATATTAACCAGCCTGACCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065485.1 ENSRNOG00000060077 ENSRNOT00000089365 3 1 1 80 6 130670079 130670102 AGATTTCACCTCACATGCGA 60 130670018 130670038 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 SNORA61 ENSRNOG00000051425 ENSRNOT00000088417 3 1 1 60 6 80258597 80258615 GAGTACACTGACACTGGCT 59 80258555 80258573 TTGAATCTGGACCAGTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052079 ENSRNOT00000087841 1 1 1 60 6 71960626 71960647 GAACGATACAGGAGAAGATTGG 59 71960668 71960686 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC117925.2 ENSRNOG00000051433 ENSRNOT00000089635 2 1 1 80 4 114778101 114778119 TGACCACTCTAAAGCCCAC 59 114778162 114778399 TTGTCTTTGCCAGAACTCAG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000057445 ENSRNOT00000090205 1 1 1 60 X 116177112 116177131 GGAAGCAACAAGGAGAAAGG 59 116177151 116177172 ATTCAGATGTTCATAGGTCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000053806 ENSRNOT00000086449 3 1 1 62 X 1517933 1517951 AAACTGGACAGAAGAGGCC 60 1517889 1517907 AAGTCTGTTGCAAGCTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052139 ENSRNOT00000080561 2 1 1 60 18 78641832 78641852 ATTCTGAAATTGGACCGACAC 59 78641873 78641892 TGTACATCATCCTTGCTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000059912 ENSRNOT00000082872 1 1 1 60 3 39945842 39945861 GCTGGTCCATAGGTAATGAG 58 39945882 39945902 AGATCAACCTGTAACTCACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059584 ENSRNOT00000082745 2 1 1 60 18 16136832 16136854 GGAACGATACAGAGAAGATTAGC 59 16136794 16136812 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Cbr1 ENSRNOG00000049693 ENSRNOT00000041838 3 1 1 89 11 33845739 33846243 ATCGCCTTCAAAGTTGTTGAC 60 33846294 33846312 GCAGACATCTTGGGTACCA 59 Novel Rattus norvegicus 81 AABR07019116.1 ENSRNOG00000048448 ENSRNOT00000073422 1 1 1 60 15 89800861 89800880 ACACGGATGAACTGATCAGG 60 89800820 89800840 GATTTCAAGGCATCAAACCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07019116.1 ENSRNOG00000048448 ENSRNOT00000073422 3 1 1 60 15 89800860 89800879 CACGGATGAACTGATCAGGA 60 89800819 89800840 AGATTTCAAGGCATCAAACCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065693.2 ENSRNOG00000051768 ENSRNOT00000084482 3 1 1 145 6 139429025 139429316 AACTAAATCACTGCACAGACTC 59 139429532 139429550 AGAGTTTCAGGGACCTTCC 59 Novel Rattus norvegicus 81 AABR07032622.1 ENSRNOG00000051848 ENSRNOT00000086400 3 1 1 139 18 74006049 74006068 GCTGAATTCAGTCCTCAGAG 58 74102608 74102627 CTTGAACAGGACGTTAGTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021861.1 ENSRNOG00000053085 ENSRNOT00000088174 3 1 1 101 13 95958432 95958450 CTGAGCTGCTCTTCATGAC 58 95958345 95958367 ATAGCCAAGGTTGTACTGC 58 Novel Rattus norvegicus 81 SNORA36 ENSRNOG00000058062 ENSRNOT00000090209 1 1 1 60 3 138472726 138472745 CTTGGTTCAGAGCAACTTCC 59 138472767 138472786 TCAGCCAATTTCAATGTCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000056958 ENSRNOT00000083715 2 1 1 65 18 24631280 24631299 GAAACAGCACTTCTGGTGAC 60 24631234 24631252 CTTGTCACAACACCGACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056905 ENSRNOT00000083588 3 1 1 66 X 33478087 33478105 TACATTTCCCAGGGCAAGG 60 33478039 33478058 GTCGAGTTTCCTGCATTTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065651.5 ENSRNOG00000051694 ENSRNOT00000089387 3 1 1 107 6 138744343 138744445 ATTTCCAACCTGTGTCCTG 58 138744254 138744272 AGTGAGAACCCAGAGACAG 58 Novel Rattus norvegicus 81 RGD1562521 ENSRNOG00000003009 ENSRNOT00000076500,ENSRNOT00000086290,ENSRNOT00000037886 2 3 3 82 X 74016387 74047878 CTGTCTGAAGAAATTGAAACCG 58 74016326 74016344 AGATTCTTTGGCCATGTGG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000056510 ENSRNOT00000078301 3 1 1 63 18 3530016 3530034 ATGGCTTCCATGTCATGTG 58 3529971 3529991 TGAGTGTACACATAGCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000051558 ENSRNOT00000085113 2 1 1 60 3 154973567 154973585 CAGTTGGTGGTTCACAGTC 59 154973606 154973627 AAACAAGTCAAGTGCAGTAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000035437 ENSRNOT00000053560 1 1 1 60 6 72181488 72181506 TCTTGGAAGCTAAGCAGGG 59 72181446 72181464 GGAATTCCCAGGTGGTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000060885 ENSRNOT00000081734 2 1 1 60 X 32924653 32924671 CGAAGACAGAAGAGGTCCT 59 32924692 32924713 ATAGGTAGGAATGCCTTAACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017527.1 ENSRNOG00000047841 ENSRNOT00000075763 1 1 1 60 15 25280247 25280268 TTTAAGATGCAGATTCCAGTCC 59 25280208 25280228 GAGCTTGTTAGAAATGCAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07041787.1 ENSRNOG00000041292 ENSRNOT00000063045 3 1 1 60 X 140117792 140117812 TGTGTCTCTTGTGTTAAGGTG 58 140117752 140117772 GGCAGTAGATTATAAGCTGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055395 ENSRNOT00000081668 2 1 1 60 7 45856549 45856570 ACAGAGAAGATTAGCATAGCCC 60 45856588 45856609 GTGGAACACTTTACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054021 ENSRNOT00000082165 2 1 1 60 X 83121521 83121545 ACTAAGAAAGAATATCCTTCCTCCC 60 83121563 83121581 TGTGTAGCTTCAGGAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055034 ENSRNOT00000084231 2 1 1 60 4 103410325 103410347 GACTTATAGAGTCATTGCAGGTG 59 103410287 103410305 TTCTGCCACCTACTGACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052210 ENSRNOT00000081490 2 1 1 60 20 43797884 43797902 CATGTCACATTTGCCTCAG 57 43797923 43797944 AGAACACAGTGTAGACATAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000054611 ENSRNOT00000087480 1 1 1 60 15 85776141 85776159 CACTGTCTAGCCTCATAGC 57 85776181 85776201 GTCTGTTTGAATTTAGCCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044722 ENSRNOT00000069989 2 1 1 60 6 64116345 64116365 ACCCTGAACATGCTAGATCTC 59 64116305 64116326 CTCATCCAAGTACAAATCTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sema4d ENSRNOG00000013679 ENSRNOT00000076019 2 1 2 112 17 13488438 13507861 GGGTTTAAGAGATGTCTTCCTG 59 13516263 13516281 TACAACCTCATGCCAAAGG 58 Novel Rattus norvegicus 81 AABR07061039.1 ENSRNOG00000058405 ENSRNOT00000092130 2 1 1 80 4 103049571 103049968 GATTCCTGCTTCCAGAGGT 59 103049509 103049529 ATAGAGACTTGACCTCCAAGG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000054752 ENSRNOT00000084786 3 1 1 60 15 26297799 26297817 TCGGTCAAGGGTATACGAG 58 26297840 26297859 AATGAGAGCTTGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055897 ENSRNOT00000088563 1 1 1 60 4 179556399 179556418 AGTTGATTTGGCTGATCTGG 58 179556358 179556376 CTCTGGAGTGGTAAGGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055897 ENSRNOT00000088563 3 1 1 60 4 179556363 179556381 CCTTCCTCCCTTACCACTC 59 179556321 179556345 CTGAAGACTAGTTCTCTTCTATTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056822 ENSRNOT00000086741 2 1 1 61 5 39954116 39954134 CAGAAGTGGGTTGGTAGGT 59 39954073 39954094 AGTCAGAACACTGAACATAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054701 ENSRNOT00000079728 2 1 1 60 19 45819043 45819061 TAGCCATTGCTTTCCAGAC 58 45819084 45819103 TAGCTGAGTTTCTCACAGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA81 ENSRNOG00000060539 ENSRNOT00000078004 1 1 1 60 11 81376570 81376589 AGAAGAGTAACTGCACTGGA 58 81376529 81376550 ACACTGGACATTAAGAAAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002008.1 ENSRNOG00000056036 ENSRNOT00000081213 1 1 1 80 1 64745841 64745859 CCTGGACTCTACTCAGAGG 58 64745901 64747539 CAGTAGTTCTCAACAGAGACC 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000044047 ENSRNOT00000069314 1 1 1 60 9 110547370 110547388 GAGCACACTTGATCTCCTC 58 110547328 110547346 GAAGCAGTAAGCGGAACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031787.1 ENSRNOG00000048913 ENSRNOT00000073301 2 1 1 65 18 34788165 34788183 TCCTCTTCCTCTTCCTCCT 59 34788212 34788230 CCAGAAATGGAGCTCTGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058459 ENSRNOT00000091416 1 1 1 60 18 23172497 23172515 TTGTGTCACATGTGGAGGT 59 23172539 23172557 CACATGTCAGAGCACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_0435.2 ENSRNOG00000053113 ENSRNOT00000083589 1 1 1 60 1 42134175 42134196 CTGGTTCATTTGGCTATTTGAC 58 42134216 42134235 TCATTTCCTAACTGAGGCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000058440 ENSRNOT00000084096 1 1 1 60 5 35285252 35285271 GCAGGACTTCATGTACAGAC 58 35285293 35285312 ACAATCATGTGTTGCTTCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072644.1 ENSRNOG00000047742 ENSRNOT00000074929 1 1 1 60 19 38207423 38207442 ACAATGCTGGTCTCAAACTC 59 38207465 38207483 TTTAGTCCCAGCATTCAGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA4 ENSRNOG00000056026 ENSRNOT00000077510 1 1 1 60 11 81375294 81375312 GTAAGACCACACTCCACAG 58 81375252 81375273 GGCCACAATATAGTAATGAACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061098 ENSRNOT00000086292 2 1 1 81 5 149367960 149367978 TAGAGGCACTGCAGATGTG 60 149368021 149368041 ACTGAGCATAGACATCGTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA72 ENSRNOG00000058104 ENSRNOT00000080360 3 1 1 60 19 55619165 55619187 CTAAACATCACCTAGAGCAAACC 60 55619127 55619147 CCAGACCTAGGGAAAGAACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052131 ENSRNOT00000091169 2 1 1 60 4 150159681 150159701 AAGGGCTATGTCTATGCTCAG 60 150159641 150159661 GTTAGGCTACTACTCATTCGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U12 ENSRNOG00000053608 ENSRNOT00000079078 2 1 1 60 3 9895529 9895548 AAAGGTTGCTATCTAAGGCG 58 9895488 9895507 GGCAGATCGCATTACTTAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U12 ENSRNOG00000053608 ENSRNOT00000079078 3 1 1 60 3 9895540 9895558 TTGAGTGGGTAAAGGTTGC 58 9895498 9895516 ATTACTTAGGCATCCCGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057621 ENSRNOT00000089884 2 1 1 61 18 75933302 75933321 GAGAGGCTGTCTCTACACTC 59 75933260 75933280 GTCAGGCTATCAGTCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056317 ENSRNOT00000080261 3 1 1 60 18 87575730 87575752 CTTATCCCTAAGTATTGCAGGTC 59 87575772 87575790 CTCTGCCACTTTCTGATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007592.1 ENSRNOG00000051732 ENSRNOT00000082468 3 1 1 109 2 20724291 20724310 GGGCTGATGAGCATTTACTG 59 20724197 20724222 CTCCAAATGCATGTTTATGTGC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000045322 ENSRNOT00000070589 1 1 1 60 5 59194204 59194222 TGATCTCAGAGGCTAAGCA 58 59194246 59194264 GAATGGCTTATCTCCCACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021220.1 ENSRNOG00000058486 ENSRNOT00000091496 1 1 1 86 13 61363616 61363635 GGTAGCACAAAGTGAAGCTG 60 61363686 61363705 ACTACCGGTTTGAACAACTC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000055273 ENSRNOT00000083391 1 1 1 60 7 49260867 49260885 AGGCTACGCCTATGTTCTG 59 49260903 49260927 CTATTAGGCTACTAATCATTCAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053277 ENSRNOT00000084468 1 1 1 60 3 124796082 124796100 CATGAGCGATTGTACTCGG 59 124796124 124796142 TTCCAGTTTCCCACATTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056099 ENSRNOT00000091451 3 1 1 60 18 81588151 81588169 AGAGTGCTTACTGCTTCCT 58 81588109 81588127 GGGCTAAAGAATGGTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057255 ENSRNOT00000083040 2 1 1 60 18 7640866 7640887 GTCAAGGGTCTAAGAGTAACTG 58 7640827 7640846 GGTCTTCAGAGCTTGTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059511 ENSRNOT00000088989 3 1 1 60 4 179054885 179054903 GGTAGATGGCAGAGAACTG 57 179054843 179054861 GGTTGTTCACAGGTCAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065165.1 ENSRNOG00000053619 ENSRNOT00000088043 2 1 1 60 6 112726769 112726788 TTACTCACTGAGAGCATCCA 58 112726728 112726748 GATGTAAAGGAGGAGTCTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000061903 ENSRNOT00000082308 2 1 1 89 6 43365337 43365355 TTGCTAGTGACCCACTGAG 59 43365407 43365426 ATTGACTGAAGCAAACAGCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058280.1 ENSRNOG00000056425 ENSRNOT00000081130 3 1 1 71 7 108383880 108383899 ATGAGATCCAGCTGTAAGGC 60 108383828 108383846 ACAGTACCACCCACAAAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000055213 ENSRNOT00000078767 2 1 1 105 7 144090359 144090378 TATCCACAGGACAGGTACAG 58 144090446 144090464 TCACCTCTAGAGGTGGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051493 ENSRNOT00000082234 1 1 1 60 9 98635419 98635442 CGATACAGAGAAGATTAGCATGAG 59 98635382 98635401 CATGCTTCATGACTTTGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051493 ENSRNOT00000082234 2 1 1 60 9 98635424 98635446 GGAACGATACAGAGAAGATTAGC 59 98635386 98635404 CTTCATGACTTTGCACGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054880 ENSRNOT00000081793 1 1 1 60 5 71411816 71411835 GCTGCTAAATCTGTCAACCC 59 71411857 71411876 CTTAGTAAGCCAGTTCAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC127106.1 ENSRNOG00000061321 ENSRNOT00000089291 3 1 1 65 2 3124296 3124316 GTAACCTCCCTGCTCTGTC 60 3124343 3124363 GAATGACTGTCTGTTCTGCAG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07063893.1 ENSRNOG00000058209 ENSRNOT00000091972 2 1 1 80 6 54443254 54443277 GAGATTTCACCTCACATGCG 59 54443319 54443338 TCCTCTTTCTCCACATCCTC 59 Novel Rattus norvegicus 81 AABR07015500.1 ENSRNOG00000057727 ENSRNOT00000089645 3 1 1 65 14 59811543 59811567 AAGCACTTTACTTGAGCAACTC 60 59811593 59811611 GCTTTGGAGATTCTGGTGC 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000058168 ENSRNOT00000082060 2 1 1 60 9 111065964 111065984 TATAGGAGGAGCAGTCTTTGG 59 111065924 111065943 AAATTCTAGCAAGGGACCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060409 ENSRNOT00000085299 3 1 1 60 9 14262710 14262728 CGTGAGTATCTGGAGTCCC 59 14262749 14262770 GTGACATACTTCAGAACTTGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064231.1 ENSRNOG00000058377 ENSRNOT00000078958 3 1 1 60 6 70276385 70276405 AATCCGGAAGAAGATTGAGCA 60 70276427 70276445 CTTCTTAGGCAGGCTGGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC109942.1 ENSRNOG00000042851 ENSRNOT00000038079 1 1 1 60 7 15129975 15129994 ATGAAGATGCCATCATGGGT 60 15130016 15130035 CAAGCATCGTTGATGTTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056755 ENSRNOT00000078225 1 1 1 60 17 79036237 79036257 CTAGAACCTCCAAACAAGCTC 59 79036279 79036297 CATTATCACCCGTGTACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_8_0651.1 ENSRNOG00000051285 ENSRNOT00000076238 1 1 1 80 8 65282846 65282864 CAGCATCTGCGATCAACAG 59 65258675 65282802 GTCTGGACATGCATTGGTG 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000045242 ENSRNOT00000070509 2 1 1 60 4 39094484 39094505 TTCTCCATCTGATCTCAGAAGC 60 39094526 39094544 ATTTACCATCCGAGCACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067506.2 ENSRNOG00000048880 ENSRNOT00000074315 1 1 1 60 9 50005868 50005887 GAAGTCAAATTCACCAGCAG 57 50005827 50005845 AATCCTCCGTACCATCAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sept4 ENSRNOG00000007367 ENSRNOT00000076841,ENSRNOT00000085052,ENSRNOT00000088581 2 3 6 60 10 74882540 74882559 TGCCTGTACTTCATCTCACC 60 74882902 74882921 ATTCCAAAGTGCTCGATCTC 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000060183 ENSRNOT00000077780 2 1 1 60 7 53616613 53616632 CCACAACTGGAAGGATAGAG 57 53616572 53616592 ATCTGTATGCTATCCTTGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044338 ENSRNOT00000069605 1 1 1 63 7 32471367 32471388 TGCACTGGTTACATCTAATCTC 58 32471325 32471343 TTCTCCCAGTCAGGTACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052462 ENSRNOT00000080164 1 1 1 60 6 34700082 34700100 GTACCTAAGCAGGTAGCAG 57 34700124 34700142 GATGTTTGTCGACTCTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063282.1 ENSRNOG00000056254 ENSRNOT00000089127 3 1 1 62 6 26641097 26641119 CATACTGAGGAGAGCCACC 59 26641053 26641071 TTTCCACCTTTGCTCTGAC 58 Novel DesignRelaxed Rattus norvegicus 81 SNORA71 ENSRNOG00000053698 ENSRNOT00000089372 1 1 1 60 4 67208511 67208529 CCTGGATTCTGGTCATTGG 58 67208469 67208487 TCCAAATACAGGGAAAGGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_1359.1 ENSRNOG00000051039 ENSRNOT00000076147,ENSRNOT00000076482,ENSRNOT00000076561,ENSRNOT00000076045 1 4 4 65 1 134885482 134885500 ATGGTAATGTGGTTGCCGA 60 134884921 134885453 CTTCAGAATGGCACACCTG 59 Novel DesignRelaxed Rattus norvegicus 81 SNORA17 ENSRNOG00000057046 ENSRNOT00000077843 2 1 1 60 17 28893313 28893332 GTATGTTTGCTGCATCACAC 58 28893272 28893290 CTGAGCATAGCCTCACTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA72 ENSRNOG00000058556 ENSRNOT00000080287 3 1 1 60 10 23480850 23480868 GACAGGCTAAACATTCGCT 58 23480808 23480827 GGTAAAGAACTAGGTCTGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057421.1 ENSRNOG00000047216 ENSRNOT00000072394 1 1 1 60 7 70287317 70287337 GTGGCTGGATTCAAGTAATCC 59 70287356 70287377 TAATCAAGAATAGGCCTCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014304.1 ENSRNOG00000057639 ENSRNOT00000084419 1 1 1 81 14 8598851 8598874 CTGATGTTCTTAGTCCTTACAGTG 59 8598790 8598812 AGGGTTCTGTGTACCTTGAG 59 Novel Rattus norvegicus 81 AABR07067042.2 ENSRNOG00000048697 ENSRNOT00000073490 2 1 1 81 9 27589343 27589361 AAATGCCTCCATGAGACCC 60 27589280 27589298 ATGGTACCACCCACAATGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA11 ENSRNOG00000058707 ENSRNOT00000085194 3 1 1 62 7 97969706 97969724 GAGCAGAGGGCCTAAAGAG 60 97969662 97969682 ATGGTCCCAGATTCTTCTTGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000058553 ENSRNOT00000088067 1 1 1 60 7 48027389 48027407 GAGCACAGTGAAGTATGCC 59 48027347 48027367 GATTCAATCCCACATGTTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056885 ENSRNOT00000083789 2 1 1 60 7 38987899 38987920 TAATAGAGGCCATAGAGGAGAG 58 38987860 38987880 GATGCTCATAGGTCAGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057673 ENSRNOT00000081273 2 1 1 60 9 73881261 73881279 CAAGTGTATCAGGAGGTGG 57 73881299 73881321 AGGTCAGAACACTGAGTATAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0706.2 ENSRNOG00000051046 ENSRNOT00000076677 1 1 1 106 10 70870698 70870856 CTAGGACTGACTGCCACAG 60 70870926 70870944 GAACGAAGTCTTCTCAGCG 59 Novel Rattus norvegicus 81 AABR07005939.1 ENSRNOG00000054593 ENSRNOT00000078318 1 1 1 80 1 207639358 207639379 GTGGTTTACCTGGGAAGAC 58 207639423 207639441 TCGCATTAAATCACAGCCT 58 Novel Rattus norvegicus 81 Rn60_10_0879.6 ENSRNOG00000051194 ENSRNOT00000076682 2 1 1 89 10 88077268 88077286 CTATCAACTGCTGAGGCTG 58 88076335 88077215 AGATGTACCTCTTGCAGGG 59 Novel Rattus norvegicus 81 AABR07026063.1 ENSRNOG00000052943 ENSRNOT00000083358 3 1 1 83 16 62165422 62165444 CAGTCCTTACAAGCATTAACAC 58 62165487 62165507 GCTACAAGAAAGAGTAACTGC 57 Novel Rattus norvegicus 81 AC103129.3 ENSRNOG00000055738 ENSRNOT00000077672 2 1 1 80 7 140159476 140162713 CAACTTGTTCGAGCAAGCA 59 140157784 140157804 GCTAAATGTGGTCAAATGCAG 59 Novel Rattus norvegicus 81 AABR07037487.1 ENSRNOG00000057658 ENSRNOT00000088630 2 1 1 68 X 22417814 22417832 AAGAAGTGCCTGAGGACTC 59 22417762 22417780 ACAGTAGGGTTCTCTGGGA 59 Novel DesignNoJunction Rattus norvegicus 81 LOC102554371 ENSRNOG00000042473 ENSRNOT00000064120 1 1 1 269 10 87928126 87928144 GTTGTGAGGAGTGTTGCTG 59 87927875 87927893 TTCATTTCGTCTCGCACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1102 ENSRNOG00000059936 ENSRNOT00000080497 1 1 1 60 7 139802653 139802672 CTTTCTCCCTCCTCTACACC 59 139802612 139802630 CGGAAGCTGTAGATGACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021691.2 ENSRNOG00000059709 ENSRNOT00000072984 2 1 1 114 13 85624868 85624886 AAAGAGGCAACTTGAGCTG 58 85624966 85624984 ACTATGTCTTTGTGGCCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07042457.1 ENSRNOG00000052590 ENSRNOT00000090769 2 1 1 73 X 157458858 157458877 TTCTTCTTGCAAGGGAGGG 60 157458803 157458827 GGTAAAGGGATGGATCTCTATAGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07036336.1 ENSRNOG00000056739 ENSRNOT00000077521 3 1 1 108 12 39021388 39021413 TTGCTTTCCTTATGTCTAGGG 58 39021298 39021317 CCGCTAATTTCTTTCTGAGC 57 Novel Rattus norvegicus 81 AABR07041247.2 ENSRNOG00000032390 ENSRNOT00000040695 2 1 1 60 X 124107572 124107592 GAGCACTACAAACATCACTGG 59 124107532 124107551 TACACCTGTAACCTGAACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC125873.2 ENSRNOG00000060487 ENSRNOT00000077559 3 1 1 60 13 109909851 109909869 TTTGCCATGTCACAGTGAC 59 109909891 109909911 GATCCACATGAAACCTGAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030911.1 ENSRNOG00000032442 ENSRNOT00000052258 2 1 1 60 10 108726352 108726370 AGGCAAGAAATTTGACCGA 58 108726310 108726331 GTCCATCTTGAAAGATTCACTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000058443 ENSRNOT00000088513 3 1 1 64 8 92174897 92174916 TATCCTTTGCACTTTGGCTG 59 92174943 92174961 TTTGAGGCTGAGTTTCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000055883 ENSRNOT00000089208 3 1 1 60 8 49201868 49201889 AAGAAAGAAGTTAGCCTTCCCT 60 49201907 49201928 ATGTGTTAGTAAACTCAAGGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006888.1 ENSRNOG00000051734 ENSRNOT00000082376 1 1 1 81 1 262861667 262861686 CGTCAGTCACTTTACTCCCA 60 262861727 262888061 CTCTAGTACCTGTTCCTCTGAG 59 Novel Rattus norvegicus 81 SNORA25 ENSRNOG00000054457 ENSRNOT00000083866 2 1 1 60 8 13871058 13871076 ATTTCAAAGAGGGCTTGGT 57 13871100 13871118 CAATCTTTGGTCACAGCGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD14 ENSRNOG00000061656 ENSRNOT00000090754 3 1 1 60 8 44992079 44992099 AAACCATTCGTAGTTTCCACC 59 44992121 44992139 TCAGACATCCAAGGAAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000054454 ENSRNOT00000081205 2 1 1 100 8 75425217 75425235 CTCTGTATATCCGCAGGGC 60 75425299 75425317 TACCACCTCTAGAGTGGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060576 ENSRNOT00000091673 1 1 1 60 8 105317903 105317922 CAGTAGGTGGCAGAGTAGAG 59 105317862 105317884 CATATGTCCACAGATCAGAACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029933.1 ENSRNOG00000019814 ENSRNOT00000026813 3 1 1 80 10 60536672 60536691 CTTCTGAAGTTGTCCTGCTC 59 60536730 60536754 GAATGGAATATAGATGAGCCCTC 58 Novel Rattus norvegicus 81 AC108312.1 ENSRNOG00000053031 ENSRNOT00000078283 1 1 1 80 14 80550933 80550954 GGTCCCACCGTAATAATCTG 58 80550998 80551017 GATATAGCATTCTGCCTCCA 57 Novel Rattus norvegicus 81 AABR07056013.1 ENSRNOG00000009072 ENSRNOT00000044978 2 1 1 60 7 18280168 18280190 ACTGTCTAGTCTATGATGAAGCC 60 18280207 18280228 GCAATCTCTTGTTGAATCTGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052284 ENSRNOT00000087562 1 1 1 60 8 73362426 73362446 ATTGGAACGATACAGAGAAGG 58 73362386 73362405 CATGAATTTGCGTGTCATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060155 ENSRNOT00000085774 1 1 1 60 8 17657181 17657199 GCTGTAACATCTGACACCC 58 17657222 17657241 CCTAGCCAGTCAAATCATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051411 ENSRNOT00000077608 3 1 1 60 8 70362864 70362885 TGTCACATGTGTATCAGTAGGT 59 70362825 70362843 CAGAACCCTGAGCATAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070926.1 ENSRNOG00000054875 ENSRNOT00000080817 1 1 1 80 8 92224992 92225015 TCTACAAATCCAGCACTAAGGA 59 92224933 92224953 GTTTCTTGCTTCTTCTAGGGT 58 Novel Rattus norvegicus 81 SNORA62 ENSRNOG00000055465 ENSRNOT00000090176 1 1 1 60 8 128808850 128808869 TGTTAGAGCTTGGAGTTGAG 57 128808890 128808910 CACACTACCTACACTTAGGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000059281 ENSRNOT00000079799 2 1 1 66 8 78579450 78579472 CCATACTACCCTGAACATATCTG 58 78579406 78579425 TTAAGAAAGCCCAACCTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054887.1 ENSRNOG00000061217 ENSRNOT00000090602 1 1 1 80 3 173166291 173166312 CTGAATCCTTCTCAGAAGAGTC 58 173166029 173166253 CCAAATGTAGCCTATAGCACTG 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000053730 ENSRNOT00000078447 3 1 1 63 3 21013276 21013294 CTGAGGTGCGATTATTGCT 58 21013319 21013339 TCCTCATCTTGGAAATAAGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025051.2 ENSRNOG00000053090 ENSRNOT00000083479 3 1 1 78 16 26592241 26592259 CTTCTTCCAGAACCCAGGG 60 26592181 26592201 TTCTAGGTCCTTCCAGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025896.1 ENSRNOG00000052858 ENSRNOT00000080696 1 1 1 60 16 54386642 54386662 TTCAACGGTAATGACACTCTG 58 54386683 54386702 ACTGATTCACAGAGGACTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052559.2 ENSRNOG00000055150 ENSRNOT00000078427 1 1 1 86 3 61672755 61672773 GAGGTAGACCTTCCAAGGC 60 61672686 61672706 AGACAGCATTAGCCAAACAG 59 Novel Rattus norvegicus 81 SNORD17 ENSRNOG00000052573 ENSRNOT00000077591 1 1 1 60 3 138393263 138393283 CTGGTAAGAATGGCTAGTGTC 58 138393223 138393241 TCTTGGTGAGATGGAACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050064 ENSRNOT00000070820 1 1 1 60 3 114919718 114919739 CCTGATCTTGTCTAATCTTGGA 57 114919679 114919699 CCTTCAGATACTCATCAGGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Adam21 ENSRNOG00000059297 ENSRNOT00000086728 1 1 1 60 16 39146346 39146365 TACACAACTTCCCAAATCCA 57 39146388 39146406 ATCACTCCATTTCCACACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051908 ENSRNOT00000092109 1 1 1 60 3 146825783 146825804 GTGTCACATGAGTATCAGTAGC 59 146825744 146825765 GAACACTCAACATAGACATAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059849 ENSRNOT00000080107 3 1 1 65 3 74710741 74710763 GGAACGATACAGAGAAGATTAGC 59 74710698 74710719 GAACACTTCACGAATTTGAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062615.1 ENSRNOG00000061521 ENSRNOT00000078708 3 1 1 88 6 74185 75597 CCACTGCAGAGATGGTCTC 60 75645 75667 AGGAGGTCACTAATCTGTTATCC 59 Novel Rattus norvegicus 81 AABR07062751.1 ENSRNOG00000055921 ENSRNOT00000083431 1 1 1 75 6 6068240 6068258 GTCTGAGAAACAGATGCCC 58 6073978 6073997 CATAGAGCATTGCAGTTCAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07046819.1 ENSRNOG00000053781 ENSRNOT00000080473 3 1 1 80 5 8047830 8047850 CACTAAGAAAGATGCATGTGC 58 8043911 8047791 AGACAGTTGTCATTTGTACTCC 58 Novel Rattus norvegicus 81 AABR07031419.1 ENSRNOG00000058992 ENSRNOT00000077144 2 1 1 82 18 13276139 13276159 TACACTTTGGACAGCATAGAG 58 13276203 13276344 AAAGAACCCATGGTCTGAG 57 Novel Rattus norvegicus 81 AABR07046961.1 ENSRNOG00000060950 ENSRNOT00000084379 3 1 1 89 5 12787121 12787141 CATTCTGACTCTATGCAACCT 58 12786835 12787074 CATTACTGTCTCTAGTAGTCCTG 57 Novel Rattus norvegicus 81 AABR07031489.1 ENSRNOG00000052389 ENSRNOT00000079756 3 1 1 81 18 15555589 15558103 GAGCAGTATCAGGTCTTTGG 58 15555527 15555545 GGGTTGAAGGATTGGTGAG 58 Novel Rattus norvegicus 81 AABR07047044.2 ENSRNOG00000060636 ENSRNOT00000090029 2 1 1 82 5 17064764 17064785 CATTAAACACCACGAGAGTCAC 60 17063418 17064721 AGCCTTGGACCTTCTTCTG 59 Novel Rattus norvegicus 81 AABR07060593.2 ENSRNOG00000055304 ENSRNOT00000088685 2 1 1 93 4 83199051 83199069 CTATTCAGCCTAAGCTGGC 58 83199126 83210514 TTTCCTTGCTGTTCACCTG 58 Novel Rattus norvegicus 81 AABR07047054.2 ENSRNOG00000058921 ENSRNOT00000086257 1 1 1 60 5 17592634 17592654 TGAAGGATTATCTTGTCAGGC 58 17556483 17556501 TCAGGACAATAGCCAAAGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07015468.1 ENSRNOG00000055970 ENSRNOT00000090766 2 1 1 60 14 58282728 58289709 ATTTCAGCGACATGGAAAGG 59 58289729 58289750 TATAAATTCAGTGGCCATGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07047103.1 ENSRNOG00000052266 ENSRNOT00000091908 1 1 1 80 5 19727955 19730869 TCAACTATACAGAGTAGGCCT 58 19727895 19727913 TTCAGAGGATCCACAGGAG 58 Novel Rattus norvegicus 81 AABR07060676.1 ENSRNOG00000060884 ENSRNOT00000084146 1 1 1 116 4 89003035 89003059 CTCTGAGACACATTCATATTTCCAG 60 89003132 89003947 GTTCTCTGTCCTTAGGCAGG 60 Novel Rattus norvegicus 81 AABR07060743.1 ENSRNOG00000051546 ENSRNOT00000088444 1 1 1 80 4 92104689 92108356 CTGTCAGAGGAAGAACGTC 58 92104627 92104647 TTTCCATCTCTAATCTCTGCC 57 Novel Rattus norvegicus 81 AABR07029878.1 ENSRNOG00000057566 ENSRNOT00000089955 3 1 1 83 10 57159321 57159339 TAAAGGACTGTTCGGTCAC 57 57152839 57152857 CTGGACTAGGATCTGGAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AC128394.3 ENSRNOG00000059861 ENSRNOT00000087902 1 1 1 114 1 12777067 12798724 CCTTGAAGCCACGATATGC 59 12776971 12776991 ACTCACCTTCAATACACAGGG 60 Novel Rattus norvegicus 81 AABR07047309.1 ENSRNOG00000061158 ENSRNOT00000086860 3 1 1 106 5 27673678 27690326 GTTGTCAAGGCTTCTCTTCAG 59 27673592 27673611 TTACCTGAGTCTGGGAAGTG 59 Novel Rattus norvegicus 81 AABR07000493.1 ENSRNOG00000053291 ENSRNOT00000081876 3 1 2 117 1 14938453 14938474 ATGAAGTTTAGAGATGTGGGAG 58 14938549 14945682 TCTAAGTGTCTTGAATTCTGGG 58 Novel Rattus norvegicus 81 AABR07000533.1 ENSRNOG00000052464 ENSRNOT00000084087 1 1 1 80 1 16967773 16967794 CTTCCAATATTTCTGTGAGTGC 58 16966158 16967732 CACTAAAGCCTAACCAGCC 58 Novel Rattus norvegicus 81 AABR07072169.1 ENSRNOG00000060787 ENSRNOT00000081040 2 1 1 110 10 84718651 84718669 GATTCTTCCCTCTGGCCTC 60 84714891 84714910 GTTTGAAAGATCTCGGGAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07061385.1 ENSRNOG00000055513 ENSRNOT00000092084 2 1 1 80 4 121085023 121088289 GACCTTTCTACATCAGTGACC 58 121088331 121088349 AGGATGCCTTCCTTAGTGG 59 Novel Rattus norvegicus 81 AABR07061400.1 ENSRNOG00000053471 ENSRNOT00000083513 3 1 1 66 4 121701599 121703142 CTCAATACCAGTGTGCAGG 58 121703171 121703190 ATAGACATGTCAGCTGATGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07000714.1 ENSRNOG00000051597 ENSRNOT00000081325 1 1 1 82 1 24073467 24073488 GGACTGATTTCCAATGAATGAC 58 24072704 24073425 AACTGTATGTGCTGTCTCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030568.8 ENSRNOG00000061458 ENSRNOT00000090210 2 1 1 174 10 93185054 93185074 CTCACAGAAGAGGAGATTGAC 58 93188126 93188147 CGTCTAGTTCAAGAATAAAGCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07030593.1 ENSRNOG00000058343 ENSRNOT00000082824 2 1 1 113 10 95145647 95145665 GTCTTCCTCGCTTCTACCC 60 95136046 95136065 CTATCATGAATTTGGCACGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07049079.1 ENSRNOG00000053914 ENSRNOT00000077312 2 1 1 80 5 103669490 103669508 GCAGAGCTAATTGACTGCT 58 103669550 103684799 ACAGAGTCATCATCTCCTCTC 59 Novel Rattus norvegicus 81 AABR07016841.2 ENSRNOG00000055948 ENSRNOT00000088780 1 1 1 60 15 1152906 1161390 TGGATATCTGTAGAGATGTGGAC 59 1152868 1152886 GAACTTCTAGGTTGCTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001006.1 ENSRNOG00000060323 ENSRNOT00000085639 2 1 1 84 1 32661258 32661276 CCACAGCAGCTCTACAGAG 60 32661323 32662152 GAATGTTCCAGGAAACCTGC 60 Novel Rattus norvegicus 81 AABR07030660.1 ENSRNOG00000053434 ENSRNOT00000080349 1 1 1 82 10 98177874 98188422 GAAGTATTCAGGAAAGTGTCTCTG 59 98188461 98188481 GCTTGCTATCTGTTTGTTTGC 59 Novel Rattus norvegicus 81 AABR07049111.2 ENSRNOG00000058292 ENSRNOT00000081710 3 1 1 81 5 105967276 105968050 CATTCGGTCATGAAACTGCT 59 105967214 105967232 GACAGCTTAATTCCTGCCC 59 Novel Rattus norvegicus 81 AABR07049282.1 ENSRNOG00000061020 ENSRNOT00000091898 1 1 1 80 5 113190824 113202717 AGACAGCTAGTGTTGTTATCGT 60 113190765 113190785 CAGTGTTTCTAATACCGCCAC 59 Novel Rattus norvegicus 81 AC103292.1 ENSRNOG00000055109 ENSRNOT00000087363 2 1 1 84 4 159734353 159737087 CAAGTGAAGAGCTTCCACAC 59 159734288 159734306 CCTTGGTAAAGGACCTGCT 59 Novel Rattus norvegicus 81 AC121719.1 ENSRNOG00000057875 ENSRNOT00000079525 1 1 1 60 5 118820855 118820874 AGTGCCTCTCAAGATCTACC 59 118851974 118851992 ATATCTCACCTTGCCACCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062069.2 ENSRNOG00000061632 ENSRNOT00000087235 2 1 1 80 4 160343976 160343994 CCATCCCAGGAGAAGACAG 59 160341906 160343934 AGTCCTTCTGTGATCTGTAGC 59 Novel Rattus norvegicus 81 AABR07030791.1 ENSRNOG00000052940 ENSRNOT00000090488 1 1 1 60 10 104820045 104820065 AATGACACAATTCCTGCTTCC 59 104818625 104818644 GGATGCATAAGTAGAGGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030834.1 ENSRNOG00000052569 ENSRNOT00000080833 3 1 1 85 10 105452801 105456185 TAATTACCGACATACACTCCTG 58 105452737 105452755 CTCAGTTCTCCATCAGAGC 57 Novel Rattus norvegicus 81 AABR07017198.1 ENSRNOG00000056086 ENSRNOT00000091492 3 1 1 80 15 17264612 17265777 GGTTCAGGTGAATCAGACAC 59 17265820 17265838 ATTGTCCTTCCGGGATGAC 60 Novel Rattus norvegicus 81 AABR07030880.1 ENSRNOG00000057341 ENSRNOT00000078771 3 1 1 82 10 107900930 107900948 GGAAGCAGACCTTCCTCTC 60 107902154 107902172 GAATTCGTCCTGGCTAGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001207.1 ENSRNOG00000054466 ENSRNOT00000082710 3 1 1 172 1 38830151 38835275 CTGCAGTGCAGAGATTCAC 59 38829997 38830016 AAGGTGCTGTAGAAACTCCA 59 Novel Rattus norvegicus 81 AABR07030911.2 ENSRNOG00000056589 ENSRNOT00000078433 2 1 1 91 10 108728498 108728516 TCTACACCCAACAAGCTGG 60 108726671 108728444 TAATTCTCCACCAGCAGACC 60 Novel Rattus norvegicus 81 AABR07030911.2 ENSRNOG00000056589 ENSRNOT00000078433 3 1 1 93 10 108728499 108728517 CTCTACACCCAACAAGCTG 58 108726670 108728443 GTAATTCTCCACCAGCAGAC 58 Novel Rattus norvegicus 81 AABR07017266.1 ENSRNOG00000051924 ENSRNOT00000080450 2 1 1 80 15 20232182 20232200 CGTTTCACAAGACCTCAGG 59 20232244 20232992 AAGTTAAGGTAAGGCCGCA 59 Novel Rattus norvegicus 81 AABR07017491.1 ENSRNOG00000059269 ENSRNOT00000079751 1 1 1 81 15 23381797 23381816 CATTTCACCTCCCAGTTTCC 59 23381859 23382066 AGATCATCAAGCCCTCTGTC 59 Novel Rattus norvegicus 81 AABR07001444.1 ENSRNOG00000057561 ENSRNOT00000086762 2 1 1 83 1 44201796 44227775 GAAGGTGGAGGGACTAGAG 58 44227822 44227840 ATGATCAGATGCCAATGGG 58 Novel Rattus norvegicus 81 AABR07031588.1 ENSRNOG00000055148 ENSRNOT00000091842 2 1 1 63 18 21111549 21111568 GTTTGGTGGAACTGTGACAG 59 21111591 21113414 CTCTAAGTCATTTGTTTCACCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07031588.1 ENSRNOG00000055148 ENSRNOT00000091842 3 1 1 64 18 21111548 21111566 GGTTTGGTGGAACTGTGAC 59 21111591 21113414 CTCTAAGTCATTTGTTTCACCC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07001455.1 ENSRNOG00000053507 ENSRNOT00000088141 2 1 1 80 1 45621416 45622042 GACTCATGATTTCGTGAGTCC 59 45622083 45622102 TGTCCACAAATTCGATGCAG 59 Novel Rattus norvegicus 81 AABR07031604.1 ENSRNOG00000051421 ENSRNOT00000090746 3 1 1 82 18 21896652 21915012 CTAAGACTGAGCACCAGCT 59 21915057 21915076 TCAATAGAGGTGGGTGTCAG 59 Novel Rattus norvegicus 81 AABR07049701.1 ENSRNOG00000060975 ENSRNOT00000088365 3 1 1 117 5 133890144 133892881 TCCCACCTTGTTTCACAGG 60 133890045 133890064 CAGTGATCCTCCTGTCTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07031665.1 ENSRNOG00000061811 ENSRNOT00000085143 2 1 1 98 18 24290777 24293911 ACATGTATGTGCAGGAGCA 59 24293973 24293991 TACGGGAATGAAACGACCC 60 Novel Rattus norvegicus 81 AABR07017818.1 ENSRNOG00000051907 ENSRNOT00000082274 1 1 1 81 15 31351916 31351937 AAGACCACTTTCTAGATGACAC 58 31351979 31352104 GAGTCCTTCCGAGTAGGAG 58 Novel Rattus norvegicus 81 AABR07062885.1 ENSRNOG00000053520 ENSRNOT00000077939 3 1 1 108 6 12717234 12718124 AAATAACAAGCTGTGGCCC 59 12718194 12718214 GTTAGACACGCTAGTCAATGC 60 Novel Rattus norvegicus 81 AABR07001594.1 ENSRNOG00000051553 ENSRNOT00000089898 1 1 1 97 1 54062464 54063362 AAGTGGACAAAGAGGACGG 60 54063423 54063441 AATCCCTGATGCCACAGAG 60 Novel Rattus norvegicus 81 AABR07031788.1 ENSRNOG00000057104 ENSRNOT00000082887 1 1 1 92 18 34899239 34899257 GTGTCTAGAGGCAGGAAGG 59 34899312 34911961 ACTGTTGCATTTCATTGGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049903.1 ENSRNOG00000057914 ENSRNOT00000087953 2 1 1 65 5 143851531 143851550 GACAGAAGGATCCAGAAGAC 57 143851577 143852415 TTTACTGGTAAGGCAGTGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07018059.1 ENSRNOG00000053491 ENSRNOT00000082495 2 1 1 82 15 37995481 38006319 GTGAGCAAAGTTCCTCTAGC 59 38006364 38006382 GAGCCTCCTGTTGTATCCT 59 Novel Rattus norvegicus 81 AABR07018064.1 ENSRNOG00000061921 ENSRNOT00000089924 1 1 1 80 15 38338431 38338450 GGTGGCTTTGCTTTCTAGAC 59 38338162 38338390 AAGTGACAGATGCTATCCCAG 60 Novel Rattus norvegicus 81 AABR07018115.4 ENSRNOG00000060223 ENSRNOT00000084187 2 1 1 74 15 40480839 40481467 TTCAATTCCTTCTGCTCGT 57 40481505 40481523 TTGTCTTCCATGTCACTGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07018119.2 ENSRNOG00000056083 ENSRNOT00000081111 2 1 1 80 15 40792183 40792959 AATGAAGTTTCAAGGACCTGG 59 40792123 40792141 GTAAGCAAGTGACGGTTCC 59 Novel Rattus norvegicus 81 AC118963.3 ENSRNOG00000057705 ENSRNOT00000085459 3 1 1 89 5 151669100 151673663 TTGCTAAGTGGCTCAATCC 58 151673716 151673734 CATGGAGTCAGCCTAACCT 59 Novel Rattus norvegicus 81 AABR07032162.1 ENSRNOG00000061355 ENSRNOT00000084357 2 1 2 80 18 50434573 50435152 AATTGTTTGCCTAATGCTCCTC 60 50434514 50434532 AGTCTCAGGAATGTCTGGC 59 Novel Rattus norvegicus 81 AC132635.1 ENSRNOG00000061631 ENSRNOT00000089689 1 1 1 87 15 43742819 43742837 TCCCGAATGCTTGACTCTC 60 43742885 43746856 TGGTCACATACTTTGATCTCCT 59 Novel Rattus norvegicus 81 AABR07050146.1 ENSRNOG00000054630 ENSRNOT00000077685 3 1 1 110 5 153403785 153403803 TGGTTTCGCTTTCTTCCCA 60 153403597 153403615 TCTCTAGGACCTGGGACAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07063599.1 ENSRNOG00000061209 ENSRNOT00000081367 3 1 1 69 6 36731313 36731332 TACATATCATCAGTGCCGGG 60 36729864 36731282 TTCATCTGTGAGGTGAAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001942.1 ENSRNOG00000055124 ENSRNOT00000082759 3 1 1 82 1 62532647 62532666 TGGATCTTGCTCAAAGAGGA 59 62507520 62532602 GCCACATGCATCCTTAAGC 60 Novel Rattus norvegicus 81 AC103574.2 ENSRNOG00000055796 ENSRNOT00000079840 1 1 1 60 1 64235372 64236934 GTCACTAAGCAGACACAGG 58 64236956 64236976 GCTTTGACCAATGATTCATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07050336.1 ENSRNOG00000054558 ENSRNOT00000079354 1 1 1 86 5 161523027 161523046 CATTCATACAGGGACATCCC 58 161523095 161524687 TACATCCGTTCTTTCTCGC 58 Novel Rattus norvegicus 81 AABR07050336.1 ENSRNOG00000054558 ENSRNOT00000079354 3 1 1 87 5 161523027 161523046 CATTCATACAGGGACATCCC 58 161523095 161524688 ATACATCCGTTCTTTCTCGC 58 Novel Rattus norvegicus 81 AABR07032277.1 ENSRNOG00000054651 ENSRNOT00000091806 3 1 1 81 18 59489731 59492162 CAGGATCTCCCTCTGTGAG 59 59492207 59492225 TCCTACGTGTGCATCTTCC 60 Novel Rattus norvegicus 81 AABR07002382.1 ENSRNOG00000058893 ENSRNOT00000083875 3 1 1 80 1 72260553 72260575 TTCTAGAAGAACCAGTGAGAGTG 60 72259158 72260515 ATAGGGAATGAATTCCCACCA 59 Novel Rattus norvegicus 81 AABR07018459.1 ENSRNOG00000057847 ENSRNOT00000086871 2 1 1 82 15 58834577 58834596 GCCAAGACTGTGGTATTCAG 59 58834640 58834847 TTCTCCGTCATTCTTCTCCT 58 Novel Rattus norvegicus 81 AABR07063742.1 ENSRNOG00000052993 ENSRNOT00000091474 3 1 1 84 6 45133757 45133775 CATCTCACAGTTTGGGCAC 59 45133950 45133968 GTCAGTGAGTCCATCTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063743.1 ENSRNOG00000051468 ENSRNOT00000091185 2 1 1 80 6 45384351 45389177 TTCCTAGGATGCAGAATTCC 57 45384290 45384308 CCTTCCAGAAACATCCCAG 58 Novel Rattus norvegicus 81 AABR07018503.1 ENSRNOG00000057305 ENSRNOT00000086501 2 1 1 80 15 62239270 62240242 TGTTTGAACAAGGACGATAGTG 59 62240281 62240301 GAGTGGTAGTAAGACCTCAGG 59 Novel Rattus norvegicus 81 AC130035.2 ENSRNOG00000055931 ENSRNOT00000079780 1 1 1 102 5 172891806 172891824 CTGCCCTCAGATAAGAGGG 59 172891178 172891198 GTTTCCAGGATACAGATTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032469.1 ENSRNOG00000058411 ENSRNOT00000081856 3 1 1 67 18 67748230 67748251 AATGTCACTCCTGTCATTTGTC 59 67695169 67748202 TCTGGACTCAAGATGTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063804.1 ENSRNOG00000054273 ENSRNOT00000077239 1 1 1 103 6 49617417 49617436 GCTACCTTTGTCTCCATGGA 60 49617502 49617899 GTAGTTCATCTGGCCCTGG 60 Novel Rattus norvegicus 81 AABR07032520.2 ENSRNOG00000052705 ENSRNOT00000082939 2 1 1 107 18 69876151 69879802 GTTTGGAAAGACTGAGCAGAG 59 69876064 69876082 TTCTCCAAACCTCTGAGCC 59 Novel Rattus norvegicus 81 AABR07063811.1 ENSRNOG00000053737 ENSRNOT00000082540 2 1 1 80 6 50285156 50287624 AACTGTTCACTAAGGCCTG 57 50285094 50285113 ACATCAGTCTTCCACTTTCC 58 Novel Rattus norvegicus 81 AABR07051250.1 ENSRNOG00000057532 ENSRNOT00000078344 1 1 1 81 3 3478021 3478041 AGGGAGAACTCATCCATTCTC 59 3478084 3482193 CCATTTCTCCAGATGGGCA 60 Novel Rattus norvegicus 81 AABR07032593.1 ENSRNOG00000052987 ENSRNOT00000079714 1 1 1 60 18 72921500 72921518 CTTATCTCCCAGGGAGACG 59 72920715 72920733 CATTGAAACATCCCAGCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07019088.1 ENSRNOG00000057291 ENSRNOT00000084024 3 1 1 82 15 87558248 87558266 CTGTCACTAGCACCTTGCT 60 87558309 87561113 TGAGATCTTCAGATCAAGGCTC 60 Novel Rattus norvegicus 81 AABR07032621.1 ENSRNOG00000054472 ENSRNOT00000086452 2 1 1 77 18 73981156 73981177 CAAACAGATAACAGGAAGAGGG 59 73971654 73971672 TTTCCGGAGGACTCATCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032747.1 ENSRNOG00000058730 ENSRNOT00000077102 3 1 1 111 18 78944655 78944674 TTACAAGATACACCCAGGCA 59 78941247 78944581 GAGAAAGGTAACCGTTCCC 58 Novel Rattus norvegicus 81 AABR07002923.1 ENSRNOG00000055794 ENSRNOT00000087815 2 1 1 61 1 89628028 89628046 GACTTCCCTGAGTCTTGCA 59 89629746 89629764 TGTTGCACATGAACGATGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019254.2 ENSRNOG00000060194 ENSRNOT00000079870 1 1 1 80 15 96817445 96817466 AATAAAGGCAGAGTCTGTTGAC 59 96790503 96817407 TAGCTGGAGGGATCTATAGAGG 60 Novel Rattus norvegicus 81 AABR07019269.2 ENSRNOG00000057671 ENSRNOT00000084273 3 1 1 60 15 97420746 97421803 AAGATATGTAGGCCTCCTGAG 59 97421822 97421843 ATGTAGGGATGTTACTTACTGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07032786.1 ENSRNOG00000057629 ENSRNOT00000079901 3 1 1 62 18 82063602 82063620 GAGTAGCAGGTTCATGTGC 59 82077306 82077324 TTGGCGATGTTCTCATTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07064631.1 ENSRNOG00000052186 ENSRNOT00000083522 2 1 1 60 6 87874932 87874951 AAATGGCAACTTCATCTCCG 59 87871432 87871452 TTAGAAGCTTGAGATCACAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032834.1 ENSRNOG00000057899 ENSRNOT00000088704 1 1 1 80 18 85003641 85067854 AAGAATGGGCAGGAGATCAC 60 85003580 85003598 TCTGAGGCAGAACAATGGG 60 Novel Rattus norvegicus 81 AABR07051646.1 ENSRNOG00000058261 ENSRNOT00000080399 2 1 1 80 3 18653581 18653602 TCTCCTAAGTTCATTTCCTCAC 58 18653643 18654026 CATTGGTTCCCAGAATCCA 57 Novel Rattus norvegicus 81 AABR07019443.1 ENSRNOG00000061313 ENSRNOT00000086918 3 1 1 62 15 105989068 105989088 ATGACATATCTTCGCTGAGGT 59 105986914 105989044 TCTAGCTGGGAGAGTCCTG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07065042.1 ENSRNOG00000054814 ENSRNOT00000084962 3 1 1 80 6 105316307 105317327 GAGGTTGGAGACAGTTTCAG 58 105317368 105317388 AAAGACGTAAGGATCAGTGGA 59 Novel Rattus norvegicus 81 AABR07020736.1 ENSRNOG00000052801 ENSRNOT00000079817 2 1 1 63 13 37139730 37139748 AGAGAAACAAGGAGGGCAC 60 37138099 37138119 TCTGATTCTTCCCACAGAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07003304.2 ENSRNOG00000058637 ENSRNOT00000080210 3 1 2 71 1 104287507 104287525 AAGAGAAAGCCCGTCACTC 60 104352005 104352024 GTTTCTAGTCCCTGGAGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07020859.1 ENSRNOG00000056388 ENSRNOT00000089001 1 1 1 80 13 43748994 43749014 CTGGTAAGACATGAGAAGCAC 59 43749053 43773098 CAGCTTCTCCCTTACTATTCTC 58 Novel Rattus norvegicus 81 AABR07052048.2 ENSRNOG00000057007 ENSRNOT00000083663 2 1 1 121 3 33946882 33949984 GATGCTCAAGAGTCCCAGG 60 33946779 33946798 TTATATGAGCAGTCTCGGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07020979.1 ENSRNOG00000060611 ENSRNOT00000090709 3 1 1 89 13 49965986 49970698 TCACATTCAAACAGGTGCT 58 49965915 49965936 CCTCTTGAACAAAGTTTGTAGC 58 Novel Rattus norvegicus 81 AABR07052085.2 ENSRNOG00000052827 ENSRNOT00000080064 2 1 1 80 3 35805050 35808096 TTGCTATAAAGGAGAAGACCC 57 35808136 35808156 TTGCCAGTAGTCTATAGTGGT 58 Novel Rattus norvegicus 81 AABR07003390.1 ENSRNOG00000056901 ENSRNOT00000082223 1 1 1 94 1 108549217 108554617 CGGGTGGATTCATAATTGGA 58 108549142 108549160 TGTTTGTGGGAATGGAACC 58 Novel Rattus norvegicus 81 AC113858.2 ENSRNOG00000056496 ENSRNOT00000086817 2 1 1 81 13 68878643 68883016 AGGGCTTAGTGTCAGAGGA 60 68883061 68883079 TTCTATGGCATGGTGGGAG 59 Novel Rattus norvegicus 81 AABR07033921.1 ENSRNOG00000059392 ENSRNOT00000078626 2 1 1 102 11 44490005 44501276 GAATCTCTTGAGACGTCCG 58 44501342 44501360 TCAGAATGGCTACGGAGAG 59 Novel Rattus norvegicus 81 AABR07033980.1 ENSRNOG00000055992 ENSRNOT00000081169 2 1 1 80 11 46870207 46870226 ATGATGCAGCGAGTATTCAG 58 46870268 46876412 AAGATCTCCATCCTCATCCT 57 Novel Rattus norvegicus 81 AABR07021430.1 ENSRNOG00000051975 ENSRNOT00000077264 3 1 1 80 13 71444372 71444391 ATGACCGACGTTAAAGGGAG 60 71441225 71444331 TTTCATCCTCTTGTCTTTGGC 59 Novel Rattus norvegicus 81 AABR07052549.1 ENSRNOG00000055699 ENSRNOT00000091918 1 1 1 110 3 60911853 60911871 GGAGGAAGAGTCAGTTGGA 58 60911190 60911779 GAGAGGCATCTGTTTGTGG 59 Novel Rattus norvegicus 81 AABR07052550.2 ENSRNOG00000051639 ENSRNOT00000089819 3 1 1 83 3 61093130 61099465 GGAAGAGAATGAATTTGAAGGC 58 61093068 61093089 GCTCTTCCATAGACTTCAACTC 59 Novel Rattus norvegicus 81 AABR07021596.1 ENSRNOG00000052673 ENSRNOT00000083307 3 1 1 61 13 80457750 80460440 TTCAGATCCGATGGAGGAC 59 80457707 80457728 GCCATAGAGATACTAGGAGTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07034457.1 ENSRNOG00000057765 ENSRNOT00000081844 2 1 1 75 11 72625589 72625607 TCACTTAAAGCCTTGGCAG 58 72639207 72639227 GGACTTGTATTTGTAGAGCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07034550.1 ENSRNOG00000056641 ENSRNOT00000082937 1 1 1 140 11 76634537 76636984 GAAAGCAGAACATGAGTTCAG 58 76644337 76644358 GAGCTCCATAGTAGACTTTCTG 58 Novel Rattus norvegicus 81 AC094636.1 ENSRNOG00000059578 ENSRNOT00000078881 3 1 1 88 6 127591693 127591711 GAGGTCTTCAGCAAGGAGG 60 127591007 127591026 GTCAGTACAGTCTTGTGCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021717.1 ENSRNOG00000057638 ENSRNOT00000090606 2 1 1 94 13 87438520 87442514 CAGGATACAGACTGAGGCTG 60 87442571 87442589 CCACCAGTCCTTGATCTGG 60 Novel Rattus norvegicus 81 AABR07034573.1 ENSRNOG00000051670 ENSRNOT00000087988 2 1 1 60 11 79133877 79133897 CAGAAACATCCTAGCAGAGTC 58 79134103 79134124 GCATGTATAATTTCTCCTGAGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07034586.1 ENSRNOG00000053105 ENSRNOT00000079686 1 1 1 80 11 80056621 80057060 ATCCTGAGAGCTTCTCCAG 58 80057104 80057122 TAGCTCATCTGACTCCAGC 59 Novel Rattus norvegicus 81 AABR07004100.1 ENSRNOG00000057921 ENSRNOT00000081060 3 1 1 81 1 124743487 124756084 TACAGGACTTTGATATAGGCCT 58 124743427 124743448 TGTAATCTTAGCACTTGGAAGG 58 Novel Rattus norvegicus 81 AABR07065465.1 ENSRNOG00000056509 ENSRNOT00000083321 3 1 1 100 6 129951261 129951285 GGAGGAATATCAAGAGGTTTAAGAG 59 129949466 129951203 TTGGTGAAGAGCTTGTGGT 60 Novel Rattus norvegicus 81 AABR07052697.1 ENSRNOG00000056417 ENSRNOT00000090069 2 1 1 80 3 69694832 69694850 ATAACAGACCTCTGCTGCT 58 69694894 69760833 TCCTACATGTGGATCACGT 58 Novel Rattus norvegicus 81 AABR07004189.1 ENSRNOG00000056064 ENSRNOT00000089979 3 1 1 80 1 129531122 129531142 TATTTGGAGGTGGAATGAAGG 58 129531469 129544594 CTTGTCTCCTCTTTCTTGCA 58 Novel Rattus norvegicus 81 AABR07065531.5 ENSRNOG00000059660 ENSRNOT00000090095,ENSRNOT00000088572 2 2 2 87 6 133668570 133676831 TGGAATAGGCCAACATCGT 59 133676882 133676900 AGTTGGAAGGTCCTATGGG 58 Novel Rattus norvegicus 81 AABR07065601.1 ENSRNOG00000051890 ENSRNOT00000083112 1 1 1 80 6 136942519 136942540 GGTGATTCTGTCTTTGTTAAGG 57 136942580 136942759 CATCCTAGAAGTTGCTGGAC 58 Novel Rattus norvegicus 81 AABR07052897.3 ENSRNOG00000060635 ENSRNOT00000092216 1 1 2 81 3 83134273 83134291 GACTACCCAAGGGAGACAG 59 83111299 83134233 CTTATGAAACCTGGAAATCCTGAG 60 Novel Rattus norvegicus 81 AABR07065766.1 ENSRNOG00000054462 ENSRNOT00000080005 3 1 1 104 6 140400189 140400292 TTTCCAATCAGTGTCCTGTC 58 140400104 140400122 TGAGAACCCAGAGACAGTG 59 Novel Rattus norvegicus 81 AABR07065815.2 ENSRNOG00000056934 ENSRNOT00000088727 1 1 1 80 6 142602030 142602130 TAGCTGCAGGTGTCTACTC 59 142601968 142601986 ACAACTTCACTGAAGCACC 58 Novel Rattus norvegicus 81 AABR07035190.1 ENSRNOG00000061668 ENSRNOT00000084891 2 1 1 80 12 6544699 6550538 CTATAACCGGACAGACTGAC 57 6550581 6550599 AGCAAAGTTCAGAAGGGTC 58 Novel Rattus norvegicus 81 AC135766.1 ENSRNOG00000053578 ENSRNOT00000083972 3 1 1 106 12 7594375 7594395 TCTACCACTGAGCTAAATCCC 59 7589958 7594307 ACTTCCAGTCCTGTTCTGG 59 Novel Rattus norvegicus 81 AABR07004397.2 ENSRNOG00000054325 ENSRNOT00000077093 2 1 1 86 1 141209968 141209988 CAAATCCTTCCTGAATCTGGA 58 141209717 141209920 CTCTGACTGGCTTCTTCAG 58 Novel Rattus norvegicus 81 AABR07065895.1 ENSRNOG00000055113 ENSRNOT00000085086 1 1 1 85 6 143879858 143879960 AGTCCCTGCATATGTCCTG 59 143879791 143879809 AAGTCAGACTGAGGGTCTG 58 Novel Rattus norvegicus 81 AABR07053480.1 ENSRNOG00000057230 ENSRNOT00000087561 3 1 1 96 3 109388065 109400375 GGTGGAGTCCAGAGTACAC 59 109400433 109400453 GGCTCATAACATGATCTGTGC 60 Novel Rattus norvegicus 81 AABR07053481.1 ENSRNOG00000058370 ENSRNOT00000078988 2 1 1 80 3 109582026 109582044 AGAGACCCAGATTCGAGGT 60 109581542 109581983 GCTCCTGAAACTGGTTTGAC 60 Novel Rattus norvegicus 81 AABR07053516.2 ENSRNOG00000060187 ENSRNOT00000077223 3 1 1 67 3 112330370 112330388 AGAAGTGAACAACGGACAC 58 112333356 112333377 CGTTAGAAGCTTAAGAGTTCAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07066736.1 ENSRNOG00000053883 ENSRNOT00000077449 2 1 1 83 9 13737716 13739317 TTCCGATATAAAGCTCACGG 58 13737652 13737670 CAGAATGGAAGTCTGGGTG 58 Novel Rattus norvegicus 81 AABR07035758.1 ENSRNOG00000061122 ENSRNOT00000092035 3 1 2 211 12 21778197 21778215 CAGATGTCTGCGTTTGGTG 60 21778561 21778700 AAGGGATTGGTGAAGGCTC 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07066829.1 ENSRNOG00000054111 ENSRNOT00000080385 2 1 1 91 9 18206900 18206919 CCTGCATTGTATTAGGGTCG 59 18206973 18209219 TTCTTCGGCATCTCCTGAC 60 Novel Rattus norvegicus 81 AABR07053717.2 ENSRNOG00000058520 ENSRNOT00000087780 1 1 1 80 3 122394595 122394613 GGTTCAGTTTCACAGTCGG 59 122393045 122394552 CAGAAGAGGACCTGTATCCA 58 Novel Rattus norvegicus 81 AABR07053717.2 ENSRNOG00000058520 ENSRNOT00000087780 3 1 1 80 3 122393052 122394558 GGCTGATGGATACAGGTCC 60 122392990 122393008 CTCCTCCTGGATCCAAGAC 59 Novel Rattus norvegicus 81 AABR07053771.2 ENSRNOG00000057381 ENSRNOT00000079791 1 1 1 80 3 125230147 125247188 TCAACTTAAATGCCACTTGGG 59 125247230 125247248 CCATCTCTGTACAGGGCAC 60 Novel Rattus norvegicus 81 AABR07066871.1 ENSRNOG00000052332 ENSRNOT00000091769 1 1 1 87 9 20463863 20463887 GGTTTCTTAGACCAATAACTGAGAG 59 20463931 20466460 AGGTCAGCTTCAAGAGACTC 59 Novel Rattus norvegicus 81 AABR07053782.1 ENSRNOG00000056616 ENSRNOT00000081821 1 1 1 82 3 125775927 125775948 CTGAAGATTCACAGAAATGGTG 58 125775991 125777213 TTTCTGCTGAGACATTGGC 59 Novel Rattus norvegicus 81 AABR07035802.1 ENSRNOG00000052918 ENSRNOT00000078493 1 1 1 81 12 22796226 22796244 GCAGCACCTCTACAATGGA 60 22792784 22796184 GAAGATTCAAATGTGGTCCAGG 60 Novel Rattus norvegicus 81 AABR07053870.1 ENSRNOG00000058774 ENSRNOT00000086934 3 1 1 81 3 131609591 131609609 AGAACATCTGACACCAGCC 60 131609652 131639446 GTGTCAATTTCTCTGTCTGCC 60 Novel Rattus norvegicus 81 AABR07067076.1 ENSRNOG00000058900 ENSRNOT00000077497 1 1 1 60 9 29403362 29403381 GAGGCCATCTTGTAATGGAG 58 29403404 29454653 CCCTGTTAGAATGCCACTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054025.1 ENSRNOG00000052276 ENSRNOT00000085307 3 1 1 81 3 136596732 136596750 CAAATCTCCTTCTCCCAGG 57 136596227 136596687 AAGTTGTCAGTCCAGTCCT 58 Novel Rattus norvegicus 81 AABR07036010.1 ENSRNOG00000060882 ENSRNOT00000090466 2 1 1 100 12 30502262 30509630 GAGGTTTCCCAGGGATCAG 60 30509694 30509712 GTTTAATCCCAGCACTCGG 59 Novel Rattus norvegicus 81 AC136867.1 ENSRNOG00000055554 ENSRNOT00000083571 3 1 1 84 12 31299108 31299637 TATCTGAAGCGAGCTGATCC 60 31299683 31299702 AGACAAGACAGGATGCTCTG 60 Novel Rattus norvegicus 81 AABR07005596.1 ENSRNOG00000059503 ENSRNOT00000091780 2 1 1 64 1 189798281 189798299 GTCAAGAATCGGACTCCTC 57 189819341 189819359 TGTAGTCTAGCCTGTCCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036080.3 ENSRNOG00000061665 ENSRNOT00000086476 1 1 1 119 12 33693466 33693487 AGACAAAGAGACTGAGACAGAG 59 33693567 33694568 ATGAGCACCATAGGTCCTG 59 Novel Rattus norvegicus 81 AABR07054352.3 ENSRNOG00000053808 ENSRNOT00000086150 1 1 1 62 3 149259512 149259530 CGCCTAGGACTACAGTGAG 59 149258211 149259489 CTTGAGTGTCCTTCTTATTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07005837.2 ENSRNOG00000054093 ENSRNOT00000091587 2 1 1 80 1 202712650 202714397 ATCATCTGTAAGCAGGCCC 60 202712588 202712610 AGCCATAACCAGAAAGACTAGAG 60 Novel Rattus norvegicus 81 AABR07026114.1 ENSRNOG00000061891 ENSRNOT00000091360 2 1 1 63 16 64877669 64877688 CAGAATGGATGTCAACGCAG 60 64877714 64878377 CTCTTCTGAATGCTTGCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07026120.1 ENSRNOG00000055659 ENSRNOT00000081035 2 1 1 61 16 64923466 64924520 TTCACTGACTGTCAGCAGG 60 64923423 64923446 CCAACAGGATTAGTAAATACCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036442.1 ENSRNOG00000051935 ENSRNOT00000088427 1 1 1 68 12 43321022 43321040 GATTGATGAGGCCACAGGA 60 43321072 43323426 TTGAGTGTCACAGGGACTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07054562.1 ENSRNOG00000053747 ENSRNOT00000078224 3 1 1 88 3 160585253 160585271 GATGGATGGTCACAAGGTG 58 160585323 160587013 TCCCTAGGATTGGCTAGAG 57 Novel Rattus norvegicus 81 AABR07005977.3 ENSRNOG00000059695 ENSRNOT00000083710 1 1 1 87 1 210397985 210398006 CCCAGATTTCCAAATCTATTGG 57 210398594 210398613 ACTGTACTTTCGGAGTAGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AC113785.3 ENSRNOG00000060104 ENSRNOT00000078332 2 1 1 81 16 69029567 69029586 TCGCCAAGTTGACATTTGAG 59 69029628 69030434 GCCAAATAGGTGTCCATTACG 60 Novel Rattus norvegicus 81 AABR07036514.1 ENSRNOG00000057122 ENSRNOT00000081685 3 1 1 103 12 45941031 45941437 GACCAGAGATTCTTTCCCAG 58 45941502 45941521 TTTCTGTCTCTTCGCTTTCG 59 Novel Rattus norvegicus 81 AC097575.2 ENSRNOG00000060790 ENSRNOT00000079447 1 1 1 60 12 46859494 46859512 TTCACCAGTACCTGCAGAG 59 46858336 46858354 GAGATAGTTCCCGGGAAGC 60 Novel DesignNoJunction Rattus norvegicus 81 LOC102552829 ENSRNOG00000052879 ENSRNOT00000084277 1 1 1 89 16 71402890 71402908 TAGATGCCAGCCATCTGTC 59 71402957 71406138 CAAGAATTCTTTCCTCTGCTCTC 60 Novel Rattus norvegicus 81 AC141169.2 ENSRNOG00000059041 ENSRNOT00000080464 3 1 1 80 9 69896441 69896459 ATCAACCTCAGAGAAGGCC 59 69896497 69899647 TATGAAGAGTACCTCCTCAATACAG 59 Novel Rattus norvegicus 81 AABR07026361.1 ENSRNOG00000053572 ENSRNOT00000089518 3 1 1 82 16 74061966 74061984 TGTGTTCCTGTCTGACCTG 59 74060940 74061920 CTTGGACCAGTAGGAACCC 59 Novel Rattus norvegicus 81 AABR07054752.2 ENSRNOG00000056980 ENSRNOT00000086486 3 1 1 80 3 168634407 168634427 CCTTGGCTCCATAAATTACCG 59 168623830 168634366 AGAAGAAACTGGGACACCTG 60 Novel Rattus norvegicus 81 AABR07026473.1 ENSRNOG00000057840 ENSRNOT00000085640 1 1 1 94 16 77995695 78013010 TCCTTTCTGCAGAGCTGAG 59 78013068 78013086 TGTTGTCGTACTCTGAGGG 59 Novel Rattus norvegicus 81 AABR07068066.2 ENSRNOG00000056522 ENSRNOT00000089903 1 1 1 92 9 80669256 80669275 TTTCCCTTCTAGATCCAGGA 57 80666961 80669201 AAACATGGACTGTAGGGTG 57 Novel Rattus norvegicus 81 AABR07068086.1 ENSRNOG00000055414 ENSRNOT00000088698 3 1 1 81 9 83313378 83313399 CCATGAAAGGGAAATTCTTGTC 58 83311869 83313338 AACTTCCTTGGAGTTTAGTGG 58 Novel Rattus norvegicus 81 AABR07026509.1 ENSRNOG00000061179 ENSRNOT00000083285 2 1 1 81 16 79816811 79817084 ATCCACCCTCTACCTACAGG 60 79817128 79817146 CCTGGACTGACTATGCAGG 60 Novel Rattus norvegicus 81 AABR07006475.1 ENSRNOG00000058389 ENSRNOT00000088585 1 1 1 246 1 236547632 236547650 AATCCTTCCGGGAACACTG 60 236577319 236577337 TGATGACATGTCCCAGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07068212.1 ENSRNOG00000059666 ENSRNOT00000085860 3 1 1 83 9 90934228 90934251 CAGGACTGTACAAAGGATAAATGG 60 90934293 90936962 GGACTGTAGGATGCTTCCC 60 Novel Rattus norvegicus 81 AC127756.1 ENSRNOG00000051474 ENSRNOT00000092096 3 1 1 87 16 82183571 82183589 CTGAGATTCAACGCCTCTG 58 82179818 82183523 GTGATTCAGACCTAGAAACCTG 59 Novel Rattus norvegicus 81 AABR07038971.1 ENSRNOG00000053156 ENSRNOT00000080597 2 1 1 85 X 65111798 65111816 TTTAACTTTCTGCTGCCCT 57 65111594 65111612 GTTCAGGTGCCAATTGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006566.1 ENSRNOG00000057279 ENSRNOT00000088105 1 1 1 80 1 240340844 240340864 ATGGAATTCTCAGATGACCAC 58 240340635 240340802 GCCTCAACGTCTATACCTG 57 Novel Rattus norvegicus 81 AABR07026565.1 ENSRNOG00000056874 ENSRNOT00000090339 1 1 1 80 16 83795319 83798630 TCCTCCTGCGAGATTATAGAG 58 83795259 83795277 TGTCAGGCAACCAAATCAC 59 Novel Rattus norvegicus 81 AABR07039139.2 ENSRNOG00000052595 ENSRNOT00000077149 3 1 1 100 X 69207716 69207735 GGAATAACCATTGGTGGCTG 59 69212239 69212257 CTCTTCTGGTGGGTTCTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07006656.3 ENSRNOG00000057920 ENSRNOT00000086100 2 1 1 74 1 244877738 244907923 TTGCAGAATCCTCCCAGTG 60 244907961 244907979 ATCTGTTCTCTGCCTCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07039236.1 ENSRNOG00000059710 ENSRNOT00000082144 3 1 1 80 X 72863009 72863029 GGAATATTACGATTGCGACGG 60 72859441 72862970 ATCTTCTACACCATCTCCATGG 60 Novel Rattus norvegicus 81 AABR07026641.1 ENSRNOG00000055434 ENSRNOT00000091922,ENSRNOT00000084598 3 2 2 83 16 87443296 87443316 CGTAATGCATCATCACATGCT 60 87443361 87470791 TGGAGGCAAATCTCAGGTG 60 Novel Rattus norvegicus 81 AABR07026991.1 ENSRNOG00000056027 ENSRNOT00000084252 1 1 1 80 17 8782117 8783343 CTCAGCAGAGACAAGTCAC 58 8783387 8783405 TTAGGGTCAGGAGACTCAC 58 Novel Rattus norvegicus 81 AABR07056517.1 ENSRNOG00000057959 ENSRNOT00000087144 3 1 1 62 7 28372131 28372312 TGAAGGTTGACGACCTCTC 59 28372338 28372356 TGCTCACAAGATCTGGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027022.2 ENSRNOG00000060239 ENSRNOT00000078774 3 1 1 91 17 11208838 11208856 ATTCTTCCCACTGTCTCCC 59 11208911 11211334 AGTTCCCTCATCTAGGAGC 58 Novel Rattus norvegicus 81 AC105485.1 ENSRNOG00000054628 ENSRNOT00000082293 3 1 1 82 1 264940477 264940500 TTCTGTGTAGAAAGTTCTAGGAGG 60 264940540 264940696 GCAGAAGATGAAGCCATCTC 59 Novel Rattus norvegicus 81 AABR07069211.1 ENSRNOG00000054478 ENSRNOT00000083731 3 1 1 71 8 12459038 12459056 ATGCCCAGACTGTTCAGAC 60 12457447 12457467 TTACTTCTTGGAAGCTCAGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AC096311.1 ENSRNOG00000052225 ENSRNOT00000088181 2 1 1 111 1 267466120 267466140 CCTCATTTCAACAGGAATCCC 59 267464196 267466047 TATGAGGGTGACCTTGGTG 59 Novel Rattus norvegicus 81 AABR07072065.2 ENSRNOG00000057355 ENSRNOT00000084208 1 1 1 80 1 269055863 269055882 CTACATCACCTTAAGGGCTG 58 269080171 269080682 AAGAAGGACGGATACTGGA 57 Novel Rattus norvegicus 81 AABR07006904.1 ENSRNOG00000055137 ENSRNOT00000078951 3 1 1 80 1 270475853 270478936 ATTCTCTGGCTTCCCTTTAGAG 60 270475794 270475814 AGAAATTCCTCCAGGAAAGGA 59 Novel Rattus norvegicus 81 AABR07073303.1 ENSRNOG00000055879 ENSRNOT00000088546 1 1 1 80 7 54740586 54740604 ACAGAGGACATGGAAGAGG 58 54740645 54741723 CAGATCTTAAGCAGCATCTCTG 59 Novel Rattus norvegicus 81 AABR07057116.1 ENSRNOG00000060210 ENSRNOT00000089822 2 1 1 81 7 56242964 56242986 CGACATGTATGCAGTACATAAGG 60 56291800 56291818 TCTTCCCATCCAACTTCGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07043106.1 ENSRNOG00000052466 ENSRNOT00000082702 1 1 1 80 19 21366265 21368329 CAGTAACAAGTGTCCAGATGTC 59 21366206 21366224 CAAGTAGGAGGCCTAGGTG 59 Novel Rattus norvegicus 81 AC115255.1 ENSRNOG00000052176 ENSRNOT00000084663 1 1 1 80 1 274135151 274135169 CAACTAAACCACAAGGCCA 58 274133639 274135108 TAGGCTCTAAAGCATTCCGT 59 Novel Rattus norvegicus 81 AABR07069588.1 ENSRNOG00000054853 ENSRNOT00000089148 2 1 1 80 8 32737968 32741178 TTAATTCACCCAGTTGGTTGG 59 32741218 32741238 GTCATTCAGAAGAGTCCTTGG 59 Novel Rattus norvegicus 81 AABR07027501.1 ENSRNOG00000055736 ENSRNOT00000090118 1 1 1 80 17 34542354 34546151 AACAGAAAGGCTAGCTTCCT 59 34542293 34542313 AGTGCATGTTCTTCAGAATGG 59 Novel Rattus norvegicus 81 AABR07027526.1 ENSRNOG00000052525 ENSRNOT00000083869 2 1 1 140 17 35532582 35542281 GGATGGATGAGAGCAGGAC 60 35542383 35542403 CCAGGAATTTACTCGTCAGGA 60 Novel Rattus norvegicus 81 AABR07069791.4 ENSRNOG00000061198 ENSRNOT00000081365 1 1 1 72 8 40036750 40036768 TCTTACGACGGAACTGTCG 60 40034221 40036714 GTTGATTCACCGCAAGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07069816.1 ENSRNOG00000052868 ENSRNOT00000086487 2 1 1 89 8 40855281 40855300 GACTGGAGTGAGGGAATCTC 59 40795822 40855229 GTCAGTCTCCCATCCTTCC 59 Novel Rattus norvegicus 81 AABR07057443.2 ENSRNOG00000059258 ENSRNOT00000078256 1 1 1 80 7 71502094 71503862 AATCATTCCTGAACACAGCG 59 71503905 71503923 TTTGTTCCTGTGTCCCTCC 60 Novel Rattus norvegicus 81 AABR07027692.1 ENSRNOG00000059534 ENSRNOT00000077648 1 1 1 114 17 40857371 40857389 TAGACAGGACACATGGGAC 58 40854165 40857295 CCATTCTCCAGAAATCATGGG 59 Novel Rattus norvegicus 81 AABR07028907.1 ENSRNOG00000057054 ENSRNOT00000081159,ENSRNOT00000088397 1 2 3 80 10 15261 15279 CAAGCTGAAACCAGAAACC 57 13174 15219 AAACTTCTCCTTCACAGACTC 58 Novel Rattus norvegicus 81 AABR07057610.1 ENSRNOG00000053590 ENSRNOT00000080792 2 1 1 87 7 80112828 80112850 TGACTAGACTCTACCGTTATAGG 58 80100029 80112784 CCTATTAAACACCAATTCTGGC 58 Novel Rattus norvegicus 81 AABR07057640.1 ENSRNOG00000054328 ENSRNOT00000090645 2 1 1 94 7 82158474 82158493 GAGCAATCTTCACTGCTGTG 60 82158550 82160468 TCTCCAGAACAGCTGTGAC 59 Novel Rattus norvegicus 81 AABR07029172.2 ENSRNOG00000055362 ENSRNOT00000079369 1 1 1 94 10 11306655 11306673 TATCTGTGGTGAGCCTTCC 59 11306731 11308042 CTTCCATAGCAGGAGGAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07029172.2 ENSRNOG00000055362 ENSRNOT00000079369 2 1 1 99 10 11306650 11306668 CTCCCTATCTGTGGTGAGC 59 11306731 11308042 CTTCCATAGCAGGAGGAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07043822.1 ENSRNOG00000051743 ENSRNOT00000081658 3 1 1 82 19 41654474 41655389 CTTCTTCAGTTCATGGATTAGCAG 60 41655427 41655448 ACAATAATGTGCACACTGTACC 59 Novel Rattus norvegicus 81 AABR07040736.1 ENSRNOG00000055206 ENSRNOT00000090863 2 1 1 63 X 108894003 108894024 ATGTGGAAAGCATTATGGAGAG 59 108894048 108894891 AACCACCTGCAAATTCAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029220.1 ENSRNOG00000053667 ENSRNOT00000084188 3 1 1 60 10 16192349 16192367 GCTGGTTCTATGCTCATGG 58 16191654 16191673 TGTCCAGTAAGTGTCTTCAC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07070129.1 ENSRNOG00000051579 ENSRNOT00000081874 1 1 1 86 8 53826161 53826179 ATTTGGAACAGAGCAGCTC 58 53825895 53826112 CTTGCCAACCCAGTATAAGG 58 Novel Rattus norvegicus 81 AABR07041239.1 ENSRNOG00000054788 ENSRNOT00000083591 1 1 1 84 X 123662350 123662368 CTTCTGGGTACCACTCCAC 59 123603291 123662302 CAGGAACGCAGAAAGACTG 59 Novel Rattus norvegicus 81 AABR07058134.1 ENSRNOG00000055252 ENSRNOT00000089725 3 1 1 81 7 101983835 101998434 AGTAGTCATAGGAGACCTGG 57 101998478 101998496 TGGTGACATGTACACATGC 58 Novel Rattus norvegicus 81 AABR07041794.1 ENSRNOG00000052271 ENSRNOT00000088248 2 1 1 60 X 140171770 140171788 GTTACCCTCAAGGAACCCA 59 140171810 140171830 CCGTATTCCCATTGCTTTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042440.3 ENSRNOG00000057733 ENSRNOT00000088577 1 1 1 60 X 155796472 155797962 GTACTTTGACCAAGCCAGC 59 155796430 155796449 TTCTGTGGACTCTTCATCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042440.3 ENSRNOG00000057733 ENSRNOT00000088577 3 1 1 61 X 155796472 155797962 GTACTTTGACCAAGCCAGC 59 155796429 155796448 CTTCTGTGGACTCTTCATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AC107527.2 ENSRNOG00000061335 ENSRNOT00000092047 1 1 1 80 7 123500555 123500574 GTAGTCCTACCCAAGCTGTC 60 123494648 123500515 TATAGTCTCCGAGTTTCCTCAG 59 Novel Rattus norvegicus 81 AC107527.2 ENSRNOG00000061335 ENSRNOT00000092047 3 1 1 80 7 123500557 123500575 CGTAGTCCTACCCAAGCTG 60 123494649 123500515 ATAGTCTCCGAGTTTCCTCAG 59 Novel Rattus norvegicus 81 AABR07070331.1 ENSRNOG00000054108 ENSRNOT00000086237 3 1 1 63 8 65990395 65990414 GTTAGCAAGATTCTCCAGGG 58 65990440 65990831 CAAGGTGTGAATCCACCAG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07027910.1 ENSRNOG00000053712 ENSRNOT00000080015 1 1 1 80 17 48644951 48644970 CTGACTCTTTGTCATTGCTG 57 48645010 48645137 ATTCACAGATATTCTCCTCGTC 58 Novel Rattus norvegicus 81 AABR07070355.1 ENSRNOG00000052489 ENSRNOT00000088648 1 1 1 84 8 66894516 66894534 CTCAGTAAACAGGCTGTGC 59 66893353 66894468 AACTAGCAGGAGGCTTCAC 59 Novel Rattus norvegicus 81 AABR07070505.3 ENSRNOG00000058432 ENSRNOT00000090432 1 1 1 80 8 72734662 72734681 TATCACAAACCAGACAGACC 57 72734722 72736385 GTTAATTCACTTCTGTGCTGG 58 Novel Rattus norvegicus 81 AABR07070587.1 ENSRNOG00000060351 ENSRNOT00000091525 1 1 1 60 8 76103051 76104210 TGATGAAGCTCGTGAGAGG 59 76103009 76103027 CATTCTGTGGTGTGCAGAC 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07070598.1 ENSRNOG00000055543 ENSRNOT00000090246 1 1 1 80 8 76332848 76333713 GCTAACTGGTGGCTTTGTC 59 76332786 76332805 TGTGGGTTCCTGTATAGCTC 59 Novel Rattus norvegicus 81 AABR07007980.1 ENSRNOG00000053154 ENSRNOT00000077467 2 1 1 94 2 36967188 36969575 GCTCTTCCCAAGAACACTG 59 36967112 36967130 GCAAGAATCACAAACAGCC 58 Novel Rattus norvegicus 81 AABR07007980.2 ENSRNOG00000057850 ENSRNOT00000082352 2 1 1 82 2 37032023 37032043 GCATGAGACCTACAAAGACTG 59 37023647 37031979 CCACGATTACACTGGTTGG 59 Novel Rattus norvegicus 81 AABR07044631.1 ENSRNOG00000053588 ENSRNOT00000091531 3 1 1 81 20 14000328 14000346 CCTCTTTCTTCACGGTCAC 58 13999572 14000283 AGGTGCTCACACCATACTC 59 Novel Rattus norvegicus 81 AC125688.1 ENSRNOG00000060545 ENSRNOT00000089369 1 1 1 70 20 14912476 14912494 ATAGCACCTCTGTGCTGTC 60 14912290 14912445 TACTTCATGCTTCTTGGATCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07044754.1 ENSRNOG00000052144 ENSRNOT00000077693 3 1 1 82 20 19605284 19605302 TCTCAGCTTTCACAAGAGG 57 19605345 19610260 TATTCTGACCTAAAGTTGTCCG 58 Novel Rattus norvegicus 81 AABR07028511.1 ENSRNOG00000058351 ENSRNOT00000087046 2 1 1 80 17 73064790 73064811 CAATCGGATTAAACTGAGAGTG 57 73064851 73065312 ACTGTGTTCTTGGTCTATCG 57 Novel Rattus norvegicus 81 AABR07070834.1 ENSRNOG00000055417 ENSRNOT00000078167 3 1 1 81 8 86215746 86215764 TTGTCACAGGAGGTCTTGG 59 86215809 86216329 ATGCCTCAGCTCTTGTCTG 60 Novel Rattus norvegicus 81 AABR07044805.1 ENSRNOG00000055873 ENSRNOT00000091093 2 1 1 99 20 21197223 21212261 CCTGGAAAGTTTCCAGCTC 59 21212324 21212342 TACCTGTTCAAGCTGAACG 58 Novel Rattus norvegicus 81 AABR07008142.1 ENSRNOG00000052560 ENSRNOT00000080850 2 1 1 80 2 45616630 45619431 AAGTACAAGGCTTTGTGACTG 59 45616570 45616588 AAGGTGAAATGGTCAGGCA 60 Novel Rattus norvegicus 81 AABR07071210.2 ENSRNOG00000054553 ENSRNOT00000082571 1 1 1 81 8 104913752 104913877 GTTTCCAGAAGACAAGCACC 60 104913921 104913939 CAGTCTGGGAGAGGAACTC 59 Novel Rattus norvegicus 81 AABR07071245.1 ENSRNOG00000052905 ENSRNOT00000087092 3 1 1 80 8 106631768 106636581 CAGTGAACAGGTTTCACTTGG 60 106636620 106636641 CATGAAGCACTCTTCAGAAGTC 59 Novel Rattus norvegicus 81 AABR07028834.1 ENSRNOG00000060526 ENSRNOT00000088554 1 1 1 84 17 87861882 87861900 CTCTGGATGGCTTGAGTCC 60 87860592 87860612 GCAATGCAGGTAAATTCAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028834.1 ENSRNOG00000060526 ENSRNOT00000088554 3 1 1 92 17 87861890 87861908 TTACCTTGCTCTGGATGGC 60 87860592 87860612 GCAATGCAGGTAAATTCAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07044980.1 ENSRNOG00000061835 ENSRNOT00000091080 2 1 1 82 20 30108187 30111690 CAATGCCACGGATCAAGAC 59 30108123 30108141 CCATGTCTTGTACGTCCGT 60 Novel Rattus norvegicus 81 AABR07060153.1 ENSRNOG00000061626 ENSRNOT00000087810 1 1 1 80 4 59288802 59288822 CAGCAGGAGAAGAGAATTCTC 58 59288090 59288762 TAGTGACTTCTGGTTGACTCC 59 Novel Rattus norvegicus 81 AABR07060222.1 ENSRNOG00000051677 ENSRNOT00000087972 1 1 1 87 4 63078376 63083914 GCTGAGATAAATGTGGACAAGG 60 63078310 63078331 CCTTTATAAGAGTTGCCATGGT 59 Novel Rattus norvegicus 81 AABR07071409.1 ENSRNOG00000055782 ENSRNOT00000084073 3 1 1 85 8 114178846 114178864 GTTAAACAACCACACCGGT 59 114176736 114178797 AAAGCAACTTCACAGGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07060261.1 ENSRNOG00000059379 ENSRNOT00000086493 3 1 1 91 4 65074135 65074153 TGTTGTGGAGGAAATGCTG 58 65073059 65074082 GTTGTGAGACCTTTATCTGGA 58 Novel Rattus norvegicus 81 AABR07071487.1 ENSRNOG00000053472 ENSRNOT00000082424 2 1 2 93 8 118464901 118464919 GTTCAGCTAACTGCTGTGG 59 118464973 118465233 CTAAGTAGACCCTATGCAACTG 58 Novel Rattus norvegicus 81 AABR07073455.1 ENSRNOG00000055688 ENSRNOT00000089206 1 1 1 80 8 120894571 120897642 AACAGCTCTATGACATCATTGG 59 120897680 120897701 TTTCTCCCATTTGAAGAAGCTC 59 Novel Rattus norvegicus 81 AABR07071552.1 ENSRNOG00000060361 ENSRNOT00000088551 3 1 1 84 8 121730434 121730452 TGTTCAAATGCCAAGCCAC 60 121726289 121730386 AACTTCTGGATGGCTGGAC 60 Novel DesignNoJunction Rattus norvegicus 81 AC123500.2 ENSRNOG00000053935 ENSRNOT00000087266 3 1 1 97 19 41928216 41928235 TTACAGAGGAGGTAACTGGC 59 41919583 41928159 CGAAGGGTATAGACTGATTCAG 58 Novel Rattus norvegicus 81 AABR07060560.1 ENSRNOG00000052084 ENSRNOT00000087410 1 1 1 82 4 80474331 80474851 ACCTCTAGGAGTAAAGGACTC 58 80474269 80474290 TCTTCTTTCTGTCCTAGAAGGA 58 Novel Rattus norvegicus 81 AC111287.1 ENSRNOG00000059841 ENSRNOT00000082305 2 1 1 90 19 43187912 43188068 GATAAAGTACCAGACGGAGGAG 60 43188119 43188137 CTCCAGACTCTCCAACAGG 59 Novel Rattus norvegicus 81 LOC103694568 ENSRNOG00000052946 ENSRNOT00000085333 1 1 1 80 Y 2654321 2654536 CCACTGAAGTTCTCTAGATAACAC 59 2654573 2654593 GAGAAGGTGTTGCTCTTACAG 59 Novel Rattus norvegicus 81 AC125982.2 ENSRNOG00000052743 ENSRNOT00000080883 1 1 1 108 7 130472641 130472659 GAGGTCAGAGCTTACTGGG 59 130472730 130473913 GACCGACAGAGCTAAGTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058672.1 ENSRNOG00000052733 ENSRNOT00000083253 2 1 1 81 7 131193185 131200728 GTATGACAGAATTTGAAGGGAGC 60 131200769 131200787 CTCAAGGGATACCAGCGAG 60 Novel Rattus norvegicus 81 AABR07058722.1 ENSRNOG00000058598 ENSRNOT00000077173 1 1 2 80 7 134986634 134988454 AGACTGAGATCTCTTCCCGT 60 134988497 134988515 TCTCGTGGAACTGGATTGG 59 Novel Rattus norvegicus 81 AABR07044081.1 ENSRNOG00000061594 ENSRNOT00000088543 1 1 1 80 19 56541200 56541457 CAAATATGGATCAGCATGGAGG 59 56541498 56541516 CGCTCTCAATTCTGTGGAC 59 Novel Rattus norvegicus 81 AABR07058788.2 ENSRNOG00000056137 ENSRNOT00000078882 1 1 1 80 7 137535128 137535652 CATTCACTTGAACGATACAACC 58 137535693 137535711 TCTTCCTCCTGGACTAAGG 57 Novel Rattus norvegicus 81 AABR07009028.1 ENSRNOG00000051925 ENSRNOT00000080377 1 1 1 60 2 84160023 84160041 ATGCTGACACCAACTTGTC 58 84127615 84160000 TAGTGTCTTCGCCTCAACTG 60 Novel DesignRelaxed Rattus norvegicus 81 AABR07044123.1 ENSRNOG00000061798 ENSRNOT00000089331 3 1 1 73 19 58907146 58907165 ATATCAGAGCTGCCAAGGAC 60 58908116 58908134 TGCCAAGACCTTACTTGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07009428.1 ENSRNOG00000055685 ENSRNOT00000077090 3 1 1 120 2 97674521 97674539 TGGATTCATCTTCCAGCCA 59 97672699 97672718 CGACAATGATGGTGGTTGAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07007088.2 ENSRNOG00000058931 ENSRNOT00000081935 1 1 1 80 1 280299191 280299209 ACAGGACAATGCTGTTTGC 59 280298004 280299150 CCTTTGGTTTGAATTCTCTGGT 59 Novel Rattus norvegicus 81 AABR07009986.1 ENSRNOG00000055301 ENSRNOT00000091825 3 1 1 84 2 119654860 119657853 CAAATCAAGACAAAGCTGGTC 58 119657899 119657917 TAAGCTCCGCAACAAACTG 59 Novel Rattus norvegicus 81 AABR07010040.2 ENSRNOG00000055732 ENSRNOT00000084029 2 1 1 82 2 121855427 121855445 CAGGAGTCTTGTCTCACGA 59 121842692 121855384 CCTTCTTTCTGCTGTTTCTCAG 60 Novel Rattus norvegicus 81 AABR07010330.2 ENSRNOG00000060192 ENSRNOT00000078133 3 1 1 82 2 132348344 132352880 GAAGGTCCTACAGATTCAGAG 57 132348282 132348301 GTTTGTGGTGGATTTATGGG 57 Novel Rattus norvegicus 81 AABR07010353.1 ENSRNOG00000054119 ENSRNOT00000085595 2 1 1 64 2 133026456 133028548 GCAGGAAAGTCCTACAGGAG 60 133026411 133026429 TTCCCGTCATCCTCTACCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07010592.2 ENSRNOG00000059218 ENSRNOT00000078727 3 1 1 116 2 142079488 142084821 GTTCTTAGGAATTCCTGGTGG 58 142079392 142079412 TCTTAACCTCTGAGCTGTCTC 59 Novel Rattus norvegicus 81 AABR07010609.2 ENSRNOG00000058331 ENSRNOT00000077599 3 1 1 81 2 143357500 143357518 AAATGTGAACGTCGATGCG 60 143347767 143357457 TGATAGGGACTCTTTCTTCCC 59 Novel Rattus norvegicus 81 AABR07010868.1 ENSRNOG00000052016 ENSRNOT00000078455 1 1 1 80 2 154030672 154033219 GAAAGAATGGCTGAGAAAGAGTC 60 154030614 154030632 GCAGCCTACAATCCATCCA 60 Novel Rattus norvegicus 81 AABR07011841.1 ENSRNOG00000056204 ENSRNOT00000084889 3 1 1 82 2 171693072 171693093 GTGCTGGATATGAGATGAACAC 59 171693136 171693561 CGCCTTTGCATAAACCTGG 60 Novel Rattus norvegicus 81 AABR07011934.1 ENSRNOG00000054050 ENSRNOT00000082323 1 1 1 80 2 176663361 176663380 TGTCTAGACTGCAAGAGTCG 59 176663417 176665601 GATTCTGGTAAATAATGGCTGTAGG 60 Novel Rattus norvegicus 81 AABR07012023.1 ENSRNOG00000057849 ENSRNOT00000087041 2 1 1 90 2 182713265 182717132 TTCTGCGTGGTAGTAGGTG 59 182713193 182713211 TGTCATCCAGTGATGGGTG 59 Novel Rattus norvegicus 81 AABR07014317.1 ENSRNOG00000053286 ENSRNOT00000080564 2 1 1 126 14 9101543 9101561 TTAAGCACTCGCTTCTGTC 58 9100313 9101454 TTAATCTGTCGTTCTTGGCA 58 Novel Rattus norvegicus 81 AABR07014424.1 ENSRNOG00000051389 ENSRNOT00000080921 1 1 1 81 14 15418315 15418336 ATTCAATTGTCTCCAGCATCTC 59 15418378 15419168 CATCAGGCTCCTGAAGACC 60 Novel Rattus norvegicus 81 AABR07012728.2 ENSRNOG00000061513 ENSRNOT00000079009,ENSRNOT00000082428 2 2 2 93 2 204039578 204040869 AAGACACCTTCAGGCAGAG 59 204040926 204040944 GCTTCATCCAATGCAGAGG 59 Novel Rattus norvegicus 81 AABR07013085.1 ENSRNOG00000053591 ENSRNOT00000082210 1 1 1 60 2 222721588 222783265 AAAGGTTGTCACCCTCACC 60 222783289 222783307 GAAGTCTCCAATGCCATCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013314.1 ENSRNOG00000060298 ENSRNOT00000091790 2 1 1 83 2 232988645 232988663 TTTGAACTAGCAAGGCACG 59 232988707 232993626 GATTTCCAGCAAATCTTTCTCC 58 Novel Rattus norvegicus 81 AABR07013410.2 ENSRNOG00000055227 ENSRNOT00000084227 3 1 1 80 2 236005030 236005657 AAGGAAAGTAGAAGGGCAGG 60 236005700 236005718 CCATCCTCGTCTCATCCTG 59 Novel Rattus norvegicus 81 AC140765.1 ENSRNOG00000053373 ENSRNOT00000087201 2 1 1 80 2 243798836 243798855 AGAGATGTGTTTGATGCCAG 58 243778123 243798793 CTCTTTGTCAGTGCCTCTC 58 Novel Rattus norvegicus 81 AABR07013743.1 ENSRNOG00000052422 ENSRNOT00000090154 3 1 1 86 2 254177921 254177942 AAATAAAGAGGAGCAGGATGAC 58 254176233 254177875 TATAGCAGCTCAAATGCCAC 59 Novel Rattus norvegicus 81 AABR07013907.1 ENSRNOG00000056191 ENSRNOT00000087260 3 1 1 85 2 262385534 262385554 GCCATCATAGAAACCATGTGG 60 262385601 262386834 TGGATGTGGTCTGTTTCCT 59 Novel Rattus norvegicus 81 AABR07070507.1 ENSRNOG00000055029 ENSRNOT00000081102 3 1 1 61 8 72904225 72904243 CATTCCCTTCCCATGACCT 59 72904270 72904288 ATTTGTGGTGAGAGGTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032095.1 ENSRNOG00000058709 ENSRNOT00000085469 1 1 1 63 18 45960516 45960535 ACTGGATTTCCATCTCTGTC 57 45960561 45960581 GCAAATCAGAACTCTTGACTG 58 Novel DesignNoJunction Rattus norvegicus 81 Cfap61 ENSRNOG00000011028 ENSRNOT00000034522 3 1 4 80 3 140156485 140156503 AACTGGAATGTTGCCAAGC 59 140156547 140160344 AACACAGTCTGTGCATGGA 60 Novel Rattus norvegicus 81 AABR07020994.1 ENSRNOG00000057663 ENSRNOT00000087794 1 1 1 60 13 51939272 51939292 CTTACCAAGTCTCAACTTGCC 59 51939315 51939333 GGTGGCATATGTCCTCCTC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORD115 ENSRNOG00000053838 ENSRNOT00000081101 2 1 1 60 1 116710520 116710541 GACAACAGAAAGTCAAGAACAG 58 116710481 116710500 GAGCGTAATCCTATTGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Chd9 ENSRNOG00000049302 ENSRNOT00000075970 1 1 4 80 19 17395975 17395995 AGCCTCTTTATGAAGAAGCAG 58 17389700 17395936 ATTTGGATCGACCAATTCTCTG 59 Novel Rattus norvegicus 81 Rn60_7_1165.1 ENSRNOG00000037374 ENSRNOT00000056556 1 1 2 80 7 116560030 116561002 GTGTGCAGAAAGAGCTCAG 59 116559968 116559986 GTAGCAGTTGATGAGCAGG 58 Novel Rattus norvegicus 81 AABR07050543.1 ENSRNOG00000052811 ENSRNOT00000085520 3 1 1 65 5 168845244 168845263 GCTGAAATCACCATCTTTGG 58 168845331 168845349 CATAGCTCTTTGGACTCCG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07040430.1 ENSRNOG00000056486 ENSRNOT00000091859 2 1 1 60 X 100207597 100207615 CTACTACCACCAATGCCAG 58 100206832 100206850 TCGACAATCTTTCCTGGTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07030383.1 ENSRNOG00000052962 ENSRNOT00000079202 3 1 1 60 10 83536127 83536145 CACATGTTGGTACATGGCT 58 83536169 83536189 GGTAAAGACTATCAGTGAGCA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07064747.1 ENSRNOG00000058139 ENSRNOT00000083826 3 1 1 64 6 93357152 93357176 GTACATATCTAGATACATGGGACTG 58 93357198 93357218 CAAATGAAGAGTCACGAAGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07001519.1 ENSRNOG00000055547 ENSRNOT00000089439 2 1 4 90 1 49618238 49681762 CAGAGGTCCAGCTAAACCC 60 49618166 49618184 CTGAACTCGGAGTTTCCCA 59 Novel Rattus norvegicus 81 AABR07001519.1 ENSRNOG00000055547 ENSRNOT00000077423 2 1 4 80 1 49425799 49425819 GTAGCTTTGAACCTGATCACC 59 49293486 49425759 GGAAGAGCTATCCAAACTGAC 59 Novel Rattus norvegicus 81 AABR07065291.1 ENSRNOG00000049801 ENSRNOT00000073939 1 1 1 87 6 119627446 119627467 TGAAGGACTTCAAGAAAGACAC 59 119627510 119627538 CTGTCTATGTCTCTATCTTCTGCT 59 Novel Rattus norvegicus 81 AABR07042565.1 ENSRNOG00000052151 ENSRNOT00000077592 3 1 1 80 19 34876 34895 ATCATGGAAAGTGGTGTGAC 58 34088 34833 GATCTTGGACACCGTAGTG 58 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000060076 ENSRNOT00000083370 1 1 1 60 14 50367834 50367852 TTGAGACCAGGAGTTCTGG 59 50367874 50367894 CAAACTTAATGTGGACACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0055.3 ENSRNOG00000058373 ENSRNOT00000081611 2 1 1 95 20 3398542 3398561 GCTGGCTCTTCTCTTTACTC 58 3395532 3395550 CTTCCTATCTCTGGCCTCC 59 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000044463 ENSRNOT00000069730 3 1 1 60 1 166886683 166886702 CATACCACCATGAACATGCC 59 166886642 166886662 AAATTCTAACTAGGCCTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Col4a4 ENSRNOG00000014851 ENSRNOT00000075968,ENSRNOT00000041176,ENSRNOT00000077503 3 3 4 95 9 88343455 88343473 TTTCAGATGGACCGAGTCC 59 88336265 88341872 CCATATTTCTTGCTGCTCCC 59 Novel Rattus norvegicus 81 Fam73a ENSRNOG00000056332 ENSRNOT00000089370 3 1 2 80 2 257507400 257507418 GAAGCTATGCATCTGGTGG 58 257507261 257507360 CCGAAGGTAAATACATTCTCTGG 59 Novel Rattus norvegicus 81 AABR07002997.1 ENSRNOG00000057350 ENSRNOT00000088454 1 1 1 66 1 92088285 92088306 GAAGCAAGATTCAGAATAACGG 58 92088238 92088257 TGACCTTGACTGGGTAAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002997.1 ENSRNOG00000057350 ENSRNOT00000088454 3 1 1 72 1 92088293 92088312 TGCCAAGAAGCAAGATTCAG 59 92088238 92088257 TGACCTTGACTGGGTAAGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07061057.3 ENSRNOG00000057607 ENSRNOT00000088153 3 1 1 60 4 103403939 103403958 TTTCTTGGATTCCTGTTGCT 58 103403786 103403804 ACTGGGTCATCTGGATGTC 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA44 ENSRNOG00000057108 ENSRNOT00000081930 1 1 1 60 9 2678510 2678528 AGAGACTTTGACAGCCCAG 59 2678550 2678570 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000057108 ENSRNOT00000081930 2 1 1 60 9 2678477 2678495 CATGGGATCTCCAACTGCA 60 2678519 2678537 TGTGATAACCTGGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053046 ENSRNOT00000091091 3 1 1 60 19 24884205 24884225 CAAGGGTTTATGAGTACTGCG 59 24884246 24884265 AGCTTTCTTGAGAGCTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097791.2 ENSRNOG00000060938 ENSRNOT00000079073 3 1 1 62 7 143212728 143212746 ATGATGCTGTCCAGATCCA 59 143212772 143212790 CTCTGAGACCTCTGTGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000052312 ENSRNOT00000081212 2 1 1 60 18 2024485 2024505 CCTTTGTGGTAGAGTACTCAG 58 2024527 2024545 CTGTCAAAGCTCCCTTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065699.4 ENSRNOG00000058352 ENSRNOT00000077771 2 1 2 86 6 139486789 139486807 CAGCTTGGCTTTCCTTGTC 60 139486967 139486985 CCAGGCTGTACTAAGCCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065772.2 ENSRNOG00000051653 ENSRNOT00000081996 1 1 1 109 6 140642199 140642217 ACATCAGTCTCAGCTTGGT 59 140641994 140642012 TTTCAGAGACCTTCCAGGC 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_10_0891.3 ENSRNOG00000051065 ENSRNOT00000076056 3 1 2 124 10 89173873 89174661 CACAAGGTCAATGCTGAGG 59 89174749 89174989 GTAACGTAAAGAAGGGCGG 59 Novel Rattus norvegicus 81 Rn60_20_0066.11 ENSRNOG00000052039 ENSRNOT00000091341 2 1 4 120 20 4428452 4428471 CATCAGTCAGCCTCTGTAGG 60 4427879 4428369 AAGTAGCAGAACTGGGCTG 60 Novel Rattus norvegicus 81 AABR07062672.1 ENSRNOG00000054436 ENSRNOT00000082812 3 1 1 63 6 2660920 2660938 ATGTGTCTTCACTCCTGCA 59 2660300 2660321 GCAAGATTTCTCACATTGACTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000433.1 ENSRNOG00000055660 ENSRNOT00000082324 3 1 1 75 1 12400879 12400898 GATGACCAAAGTGAACAGGG 59 12403155 12403173 ATCTTCGATCAGGAGTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07030091.1 ENSRNOG00000054016 ENSRNOT00000079528 2 1 2 80 10 67111163 67111182 GAGAAGTGAACTTGACCTGC 59 67110305 67111120 CCAGAAGCACACTCTAGCA 59 Novel Rattus norvegicus 81 AABR07062033.1 ENSRNOG00000056448 ENSRNOT00000088061 1 1 2 60 4 157753882 157753902 TCCATCCACAGAACTAAACAC 58 157754140 157754158 TTGACAGTCAGGGCTACTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062344.2 ENSRNOG00000059558 ENSRNOT00000077138 3 1 1 108 4 170077450 170077468 AGAAAGTACTCGGGAACCC 59 170075637 170075660 GTCCCATGTTGACAGTTTATATGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07049681.1 ENSRNOG00000052717 ENSRNOT00000090776,ENSRNOT00000082851 2 2 2 82 5 132706093 132708831 GAATCCAGGCATAAATGATGTG 58 132708871 132708892 CATAATTCATACCTGGATTCGC 58 Novel Rattus norvegicus 81 AABR07017649.1 ENSRNOG00000057684 ENSRNOT00000079422 3 1 1 62 15 29664805 29664824 AGTAGCCTGGAAACTCAGAG 59 29666867 29666885 GAGCCTCTTGAGGACACTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07062539.2 ENSRNOG00000053496 ENSRNOT00000083026 1 1 1 63 4 181677063 181677082 CTCCAAGAGTAAACACCCAG 58 181676537 181676555 TCCTGCCAGTCTCATTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07063599.1 ENSRNOG00000061209 ENSRNOT00000081367 2 1 1 61 6 36731270 36731289 GCTATGATCCTTCACCTCAC 58 36729829 36729847 CTAGGGCCTGGAATTCCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07018197.1 ENSRNOG00000056292 ENSRNOT00000085957 1 1 2 80 15 46502329 46512109 CTTGAAGTATTTAGAGGGATGATGC 60 46512147 46512165 TCAGACCTGAAGCACAGAC 59 Novel Rattus norvegicus 81 AABR07051511.1 ENSRNOG00000054597 ENSRNOT00000080055 1 1 1 107 3 14433554 14433572 GCCGATTCATTCGCAAGAG 60 14434668 14434686 CAGGTCTTAGCAGAGTGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019432.1 ENSRNOG00000056339 ENSRNOT00000077422 1 1 1 73 15 105203080 105203098 TTCTACCACATGGAGCCAC 59 105205029 105205047 AATCTTCAGCCTTGCAAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07064835.1 ENSRNOG00000057286 ENSRNOT00000088958 3 1 1 78 6 97335375 97335393 TGGTGCTTTCAGGAGAAGG 60 97427433 97427454 TCCTTTCTCCTCTGTAGATCCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07051957.2 ENSRNOG00000059612 ENSRNOT00000083844 2 1 1 60 3 30248550 30248570 ATTAAACACCATGTGACCCAG 59 30247188 30247209 TACTTCCTATGGAATGGATGTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07033829.1 ENSRNOG00000054085 ENSRNOT00000083175 1 1 1 71 11 39618518 39618536 TCAGGCCAACATGAGTGAG 60 39648230 39648252 CCATTATCTCCTGATGTCTTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052550.1 ENSRNOG00000051466 ENSRNOT00000091599 3 1 1 60 3 61124855 61124874 CTTTACCCTCTCAGACATCC 57 61124897 61124915 ACAGATGTCCGTTCTTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004404.1 ENSRNOG00000060197 ENSRNOT00000088103 2 1 1 71 1 141675222 141675242 GTAAGAAAGAAGAAAGGCGGA 58 141679384 141679403 CTTAACCTCTGAGCCATCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07025818.2 ENSRNOG00000058850 ENSRNOT00000079165 3 1 1 144 16 51791833 51791851 CTACGCACCAATGTCTCTG 58 51790974 51790994 GCGAACACTAAATGGAATCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026114.1 ENSRNOG00000061891 ENSRNOT00000091360 1 1 1 64 16 64877670 64877688 AGAATGGATGTCAACGCAG 58 64878361 64878379 CACTCTTCTGAATGCTTGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07054564.1 ENSRNOG00000052901 ENSRNOT00000088010 1 1 1 64 3 160964928 160964946 GAGAGGCTTGGAAATGGAG 58 160972991 160973009 AGTGCTCTTGACTGCTGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07036531.1 ENSRNOG00000061520 ENSRNOT00000090837 3 1 1 83 12 46494607 46494625 CTTGTACCTCTGGGTTGAG 57 46495851 46495869 CCTACCGATGCTCTAAGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07056464.1 ENSRNOG00000060280 ENSRNOT00000088976 1 1 2 121 7 26145821 26145937 TACAGAGGGCTAGGTCTCC 60 26145718 26145736 TCTCACTTACTTCCGCCAC 59 Novel Rattus norvegicus 81 AABR07027235.2 ENSRNOG00000060732 ENSRNOT00000090749 2 1 1 69 17 20636847 20636866 TGATTAGAGGAGTTCAGCGG 59 20668849 20668867 GAGAGTTCTGGGTTCGGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07007057.1 ENSRNOG00000055729 ENSRNOT00000091432 2 1 1 79 1 278524946 278524964 CATCCTGACCATTCACACG 59 278522692 278522710 TTCTGTCCATAGGCTCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029489.1 ENSRNOG00000051759 ENSRNOT00000085947 3 1 1 68 10 30555462 30555483 GAATTTAATCTGCAACTGCCAG 59 30546833 30546852 CCCTTTGCAATGGTACAGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058985.2 ENSRNOG00000059271 ENSRNOT00000086366 3 1 2 150 4 105100 105118 TTACTTGCGCCACTAAAGC 59 105232 105337 TGTGGAAGCAGCTCATCTC 60 Novel Rattus norvegicus 81 AC125688.1 ENSRNOG00000060545 ENSRNOT00000089369 3 1 1 82 20 14912431 14912451 TGTTCTGAGATCCAAGAAGCA 60 14912235 14912253 TCTTGACACGGTAGCTCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07071409.1 ENSRNOG00000055782 ENSRNOT00000084073 2 1 1 107 8 114178845 114178863 TTAAACAACCACACCGGTC 58 114176713 114176733 GAGAACTCCACAGATCATGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07045378.1 ENSRNOG00000060093 ENSRNOT00000079308 3 1 2 82 20 45681161 45681180 GTAACAGGTCACAGGAAAGC 59 45681225 45683141 TGTCCATGACCTGTCTCTG 59 Novel Rattus norvegicus 81 AABR07044001.4 ENSRNOG00000058847 ENSRNOT00000089288 3 1 1 61 19 52061449 52061467 CAGGCTTCAGTGAACTCCT 59 52053580 52053598 GAGAGCAGTTACACCTGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071779.1 ENSRNOG00000053916 ENSRNOT00000089287 2 1 1 60 8 130967903 130967923 TCACTTTCTGCACTTGAACTG 59 130967655 130967673 TAAAGTACCTGACAGCAGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07010985.1 ENSRNOG00000057008 ENSRNOT00000078751,ENSRNOT00000082918 3 2 2 143 2 156311186 156316031 AGTACTCCAAGGGCATGAG 59 156311061 156311082 CCATGTATATCAGCGTTTAGGT 58 Novel Rattus norvegicus 81 AABR07011434.1 ENSRNOG00000058603 ENSRNOT00000083999 1 1 1 60 2 162021722 162021740 CCTTGTAGCCCAGAAAGCT 60 162022788 162022806 GGTTTGAAGAGCTCACCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014649.1 ENSRNOG00000053415 ENSRNOT00000080022 3 1 1 101 14 24842981 24843001 AGTAGTACTACATGTGCCCAG 59 24877936 24877957 GTTTGAATGCTGCATATCTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07012728.2 ENSRNOG00000061513 ENSRNOT00000079009,ENSRNOT00000082428 3 2 2 95 2 204039578 204040869 AAGACACCTTCAGGCAGAG 59 204040927 204040946 GAGCTTCATCCAATGCAGAG 59 Novel Rattus norvegicus 81 Mt-cytb ENSRNOG00000031766 ENSRNOT00000042098 1 1 1 60 MT 14636 14657 CTTCTCAGTAGACAAAGCAACC 59 14678 14696 GAATGGGAGGATGAAGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC499530 ENSRNOG00000031115 ENSRNOT00000049679 2 1 1 104 2 48966183 48966202 AATTCTGGGAGCAACATGAC 59 48966268 48968456 CAACTGTGATCCAAGATCGT 58 NA Rattus norvegicus 81 Rab3c ENSRNOG00000011623 ENSRNOT00000015871,ENSRNOT00000086851 3 2 2 81 2 41592182 41684262 CTGTACAAGATTGGTCAACTCAG 60 41592123 41592142 ATGTCACATTTGTTTCCGGC 60 NA Rattus norvegicus 81 Mir137 ENSRNOG00000035491 ENSRNOT00000053614 1 1 1 60 2 221658139 221658160 TGGGTGGATAATACGGATTACG 60 221658181 221658199 GTACTCTCCTCGACTACGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Per3 ENSRNOG00000018413 ENSRNOT00000024932 1 1 1 80 5 168095566 168099151 CTACAGTCAGAAAGTGTTGCC 59 168095506 168095524 CTTGAATCCTTCTGCGGTC 59 NA Rattus norvegicus 81 Mbnl1 ENSRNOG00000014076 ENSRNOT00000088461,ENSRNOT00000036808 2 2 2 81 2 150846714 150855970 CAGACAGACTGGAGGTGTG 60 150856015 150856033 GCAGGATGAGCAAATCGAC 59 NA Rattus norvegicus 81 Dffb ENSRNOG00000025030 ENSRNOT00000032825 2 1 1 80 5 171259906 171259924 CGACCTTCTGCATCATGTG 59 171258005 171259863 GACTCCAAACCTTCAAACCA 58 NA Rattus norvegicus 81 Ifi44l ENSRNOG00000049994 ENSRNOT00000073547 3 1 1 80 2 256967596 256976406 GGTATCAGTTCAACCCACG 58 256976449 256976468 GAATCCTGTCCTTCAGAGGT 59 NA Rattus norvegicus 81 Dad1 ENSRNOG00000009090 ENSRNOT00000012233 1 1 1 103 15 32887758 32887776 GTTCGGCTACTGTCTCCTC 60 32876288 32887692 GTATTCTCAAGCAAACCGCT 59 NA Rattus norvegicus 81 Tinf2 ENSRNOG00000020189 ENSRNOT00000027362 2 1 1 81 15 34361764 34362184 TCAAGAAACCAGTGCTATCC 58 34361702 34361720 TCTTCCTCATCAGAGTCCA 57 NA Rattus norvegicus 81 Ufm1 ENSRNOG00000038176 ENSRNOT00000058116 2 1 1 102 2 143101630 143104205 CTACCGTACAAAGTCCTCAG 58 143100739 143100757 TAATCGCACTTGTAGCAGC 58 NA Rattus norvegicus 81 Fyb ENSRNOG00000013886 ENSRNOT00000018634 2 1 1 80 2 55949852 55952185 TCCTAACAGCCACAGTCAG 59 55953505 55953526 TCTATCCCATCATAGATGTCGT 58 NA Rattus norvegicus 81 Iqsec2 ENSRNOG00000058975 ENSRNOT00000079802,ENSRNOT00000078824 1 2 5 60 X 22247178 22247196 GGTCCAGACTCATGGAACC 60 22249057 22249077 TGTAGAGTATGAGACGCTGTG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100910479 ENSRNOG00000048079 ENSRNOT00000073707 3 1 1 60 20 638015 638033 CCTAACAGCTCCTATGCAC 58 637973 637993 TAACCACGGTATACAGAAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ermap ENSRNOG00000000335 ENSRNOT00000039305 2 1 1 80 5 138237929 138239249 CAGAAGATGTCAGTTCATATGGAG 59 138237872 138237892 GAAGATGGCTATCGTGAAGAG 58 NA Rattus norvegicus 81 LOC171573 ENSRNOG00000008563 ENSRNOT00000011381 1 1 1 80 8 41444918 41444937 AAGGAAACTCCACCTGTGAG 60 41444422 41444880 CAAAGAGGATATCAACACCTTGAG 60 NA Rattus norvegicus 81 Gjb6 ENSRNOG00000022116 ENSRNOT00000011742 2 1 2 81 15 37408544 37409597 TGGCTGTTATTGAAAGGTGAC 59 37408483 37408501 GTCAGCAGTGTTAGTGGTG 59 NA InUTR Rattus norvegicus 81 Kcnj15 ENSRNOG00000001656 ENSRNOT00000002259 2 1 1 85 11 35580352 35584101 TGACCTACAGAGTGGTCCA 60 35584150 35584168 CATTGCTGTGCTTCACCAG 60 NA Rattus norvegicus 81 Rcan1 ENSRNOG00000001979 ENSRNOT00000002715 3 1 1 109 11 32544254 32545579 TACTTTGCCCAGACTTTACAC 58 32544165 32544183 ACTTGTTTCCAGCCAACAG 59 NA Rattus norvegicus 81 Amy1a ENSRNOG00000033529 ENSRNOT00000022496 3 1 1 80 2 216430932 216430953 AAGTGACCATTAACTCAGACAG 58 216430771 216430894 CAACCATGTTCCTTATTTGACG 58 NA Rattus norvegicus 81 Bckdhb ENSRNOG00000009928 ENSRNOT00000013249 1 1 1 81 8 91527102 91527121 AAAGCTTGGAGTGTCTTGTG 59 91527159 91596412 GATCACAGACTTACAAACTGTATCC 60 NA Rattus norvegicus 81 Mir34b ENSRNOG00000035561 ENSRNOT00000053684 2 1 1 61 8 55492595 55492615 TGTAGGCAGTGTAATTAGCTG 58 55492554 55492572 GATGGCAGTGGAGTTAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Runx1 ENSRNOG00000001704 ENSRNOT00000002313,ENSRNOT00000084134 1 2 2 93 11 32777409 32807362 CAAAGTCAGATGCAGGATGC 60 32777335 32777353 CAGAAGAGGTGATGGACCC 60 NA Rattus norvegicus 81 Map4 ENSRNOG00000020748 ENSRNOT00000056166,ENSRNOT00000056161 3 2 2 80 8 118067161 118067180 TGGTGATGAGAAATCTGGGA 59 118067219 118085417 GAAGATGGGATATCTTCAACCTG 59 NA Rattus norvegicus 81 Mir383 ENSRNOG00000035589 ENSRNOT00000053712 2 1 1 65 16 57519680 57519699 AGATCAGAAGGTGACTGTGG 59 57519727 57519745 TCTTTCTGACCAGGCAGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcne2 ENSRNOG00000029811 ENSRNOT00000040844 3 1 1 66 11 32440386 32440404 TATCAGCACTCCTGTGAGG 59 32445739 32445758 GTCAAGTTGGCTAAAGTGGT 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr7 ENSRNOG00000015289 ENSRNOT00000020514 1 1 1 60 1 70485800 70485819 AGTAAAGACATCAGGGACGG 59 70485759 70485779 AGAGGATCAGCAGGTAAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pacsin1 ENSRNOG00000054603 ENSRNOT00000090820 1 1 1 80 20 7282813 7282949 CTGAACAGCAGAAGAAAGTGG 60 7283004 7283026 CCTTCTCATACTTCTCCTGAGTC 60 NA Rattus norvegicus 81 Pcp4 ENSRNOG00000001628 ENSRNOT00000002221 1 1 2 83 11 36880196 36910233 AGATAATGGCAAAGTGCTCAC 59 36910278 36910296 TCTTAGAGACCGAGCAGGT 60 NA Rattus norvegicus 81 RGD1560112 ENSRNOG00000050155 ENSRNOT00000074943 1 1 1 80 8 41553283 41554121 ACTCCCTCCAAGCTTTGAC 60 41554164 41554183 GACAGCATCCTTCTCCTCTC 60 NA Rattus norvegicus 81 Zscan2 ENSRNOG00000022164 ENSRNOT00000034267 1 1 1 123 1 142679828 142679846 CTGAGGTGAATCCAGAGGG 59 142679933 142682109 CAAGAAACACTGCCTCTCC 59 NA InUTR Rattus norvegicus 81 Zcchc13 ENSRNOG00000002923 ENSRNOT00000003899 1 1 1 60 X 74497619 74497639 CACATCCAGAAAGACTGTACC 59 74497661 74497679 CCATGTGTCCATTCTCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC686967 ENSRNOG00000046235 ENSRNOT00000074881 2 1 1 60 1 229100876 229100897 GTATGATTGTGCTGATTCTCTG 57 229100917 229100936 GCAAGGAAACAATACATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr214 ENSRNOG00000050279 ENSRNOT00000072749 3 1 1 60 1 170863969 170863988 ACAATCATAGCCCTGTACCT 58 170864011 170864029 TGATGACCAGGAGTAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrpl15 ENSRNOG00000008566 ENSRNOT00000085621,ENSRNOT00000011619 1 2 2 80 5 14612083 14612101 AGCTTGTGAATGGGAGAGG 59 14612144 14616842 TATCAGCACCCTCTTCAACC 60 NA Rattus norvegicus 81 Slc35a3 ENSRNOG00000061832 ENSRNOT00000085122 2 1 1 81 2 219719547 219725329 CAAAGACAGTAAGTGTAGTGTG 57 219719487 219719505 CTTCAGTGTTTCCATGGGT 58 NA Rattus norvegicus 81 Trmt44 ENSRNOG00000008898 ENSRNOT00000011824 3 1 1 80 14 80367275 80367293 CAGAGGGATTGATGTCCGA 59 80367336 80369733 GGAGTGATGGAACCTTCCTC 60 NA Rattus norvegicus 81 LOC100360446 ENSRNOG00000019884 ENSRNOT00000026979 3 1 1 60 1 199654867 199654886 TTCAAGTGCAGGAATTGTGG 59 199654826 199654846 TTTGATGGTGAATGAGGTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhfr ENSRNOG00000013521 ENSRNOT00000018259 2 1 1 80 2 21940706 21940724 TGAACAACCAGAGCTAGCA 59 21940768 21943415 TGATTCATGGCTTCCTGGT 59 NA Rattus norvegicus 81 Rbm10 ENSRNOG00000008472 ENSRNOT00000077453,ENSRNOT00000011317 1 2 2 80 X 1757992 1758012 CTGGACTCTATCAGCAATCAG 58 1757817 1757954 GTGACATGATGGTATATGACTGG 59 NA Rattus norvegicus 81 Hrc ENSRNOG00000020719 ENSRNOT00000028116 2 1 1 80 1 101327377 101327398 ATGTAGTGAATGTGAAAGCTGC 60 101327439 101327654 CAGAATTGGCAGTGCTGAC 60 NA Rattus norvegicus 81 Olr507 ENSRNOG00000055270 ENSRNOT00000090035 1 1 1 60 3 73800647 73800666 ACAATGACAAAGTGGCTTCC 59 73800606 73800626 ATCAAGGGATTCAACATAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0551.5 ENSRNOG00000038267 ENSRNOT00000029387 3 1 1 60 X 54892905 54892923 GAAGAGGAAGAGAAAGCCC 58 54892863 54892881 TGACTTTGCCTTTAGTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lect2 ENSRNOG00000012189 ENSRNOT00000016252 3 1 1 85 17 8489442 8490542 TTTGATTTCCACTGCCCTG 58 8490591 8490609 CATAGCTGTCACATGTCCG 58 NA Rattus norvegicus 81 Paqr9 ENSRNOG00000032374 ENSRNOT00000049729 1 1 1 60 8 103337849 103337867 AGACGCTCAACTTCTGGAC 60 103337891 103337909 CGGCAGAACTTACTGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Agxt2 ENSRNOG00000017821 ENSRNOT00000024035 2 1 1 80 2 60367015 60367035 ACACTTACATCACTTCAGCAC 59 60367076 60372943 TCTTCAATCACCTCAAGCAC 58 NA Rattus norvegicus 81 LOC100910255 ENSRNOG00000045562 ENSRNOT00000092118,ENSRNOT00000070881,ENSRNOT00000073111 3 3 3 80 2 184901905 184903595 CTACATACAGGACTCTGCTGG 60 184903637 184903655 GAAAGCCAAGAGAAGCCTG 59 NA Rattus norvegicus 81 Rn60_X_0594.6 ENSRNOG00000051313 ENSRNOT00000076102 2 1 1 81 X 58583431 58583451 ACATGGCATTATAGCCAAGTG 59 58583228 58583390 GGCTCAAGTGCTGAATATCTC 59 NA Rattus norvegicus 81 Capsl ENSRNOG00000054277 ENSRNOT00000089609 1 1 1 80 2 58744579 58747564 CTATGATAAAGATGGGTTGGTGAC 59 58747600 58747621 ACATCTGTATCAATGGATGCAC 59 NA Rattus norvegicus 81 Tgif2lx2 ENSRNOG00000029850 ENSRNOT00000045685 2 1 1 60 X 90588548 90588568 TGCCAATATGCCAAGAATCTC 59 90588588 90588608 TTCTGGCCAAGATAAGACTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1118 ENSRNOG00000030856 ENSRNOT00000046875 3 1 1 60 8 17860253 17860274 CCTTATCTTCAGCTTGTTCCTC 59 17860214 17860236 GATGAGCAGATTTCCTAGTACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B4galnt3 ENSRNOG00000010344 ENSRNOT00000036721 3 1 1 80 4 152756262 152756280 GCTGAATTCTGGCTGAGTC 59 152755806 152756219 CCATTCCTTTCCTGTCTTGC 59 NA Rattus norvegicus 81 LOC100911944 ENSRNOG00000050764 ENSRNOT00000073085 2 1 1 60 8 18051066 18051087 TATTGGACTGACATATGCTCCT 59 18051027 18051046 TATACACAGGAACAAGCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr92 ENSRNOG00000015811 ENSRNOT00000021169 3 1 1 60 1 168455624 168455644 GGTTATTGTAGCATCTGTGGG 59 168455584 168455607 GATCAGAGTATAGGACAGAATGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Insig1 ENSRNOG00000006859 ENSRNOT00000009233 2 1 1 81 4 345588 346034 CGTCTACCAGTACACGTCC 60 346079 346097 CACTGTGACACCTCCTGAG 60 NA Rattus norvegicus 81 Sec14l2 ENSRNOG00000004672 ENSRNOT00000006542 3 1 1 80 14 84353463 84353482 ACTTTCTCCTTCGATGGCTC 60 84348657 84349076 GGAATTCCACATGCTTCCG 59 NA Rattus norvegicus 81 Olr1314 ENSRNOG00000006035 ENSRNOT00000007901 3 1 1 60 8 43442822 43442841 GGCAGACAGAAAGCATTCTC 59 43442781 43442800 CGTAGGCACAAAGAATAGCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scamp2 ENSRNOG00000019136 ENSRNOT00000066923 3 1 1 81 8 62360092 62360688 TGTGGATGTTGCATTCAGTG 59 62360732 62360750 GTTCCATTAGCTGCGTCAC 59 NA Rattus norvegicus 81 Cdc42ep2 ENSRNOG00000020904 ENSRNOT00000028379 1 1 1 81 1 221273786 221281163 CTCCTCAAGCTTCTCAACTC 58 221273724 221273743 GAAAGGTGAGATCTCAGCAG 58 NA InUTR Rattus norvegicus 81 Kctd10 ENSRNOG00000047896 ENSRNOT00000073019 2 1 1 92 12 48005835 48006924 CTACACCAGCAATTCCGAC 59 48006979 48006998 TTTATGAACAGGACCCTCCC 59 NA Rattus norvegicus 81 Ntrk1 ENSRNOG00000013953 ENSRNOT00000018961 2 1 1 80 2 187147183 187147496 GTGATACCTGTGTCCACCA 59 187147121 187147139 AGACCTTTCCAAAGGCTCC 60 NA Rattus norvegicus 81 Cecr5 ENSRNOG00000011338 ENSRNOT00000015090 2 1 1 80 4 153064892 153064910 TTGCAGTACCACAACAAGC 59 153062169 153064849 ATTCTGGAAGCCTAGTGCTC 60 NA Rattus norvegicus 81 Neil2 ENSRNOG00000010696 ENSRNOT00000014198 1 1 1 82 15 46377579 46377598 TGGGTGAATGACTTCTCCAG 60 46375404 46377534 AAATGGAGTACCAGCCTGG 59 NA Rattus norvegicus 81 Rn60_17_0410.2 ENSRNOG00000051206 ENSRNOT00000077042 1 1 1 80 17 39106295 39108784 AGAGCCATCATCTATTGGTGG 60 39108826 39108844 AGTCGCTGTTTACCTGTCC 60 NA Rattus norvegicus 81 Apoc4 ENSRNOG00000018405 ENSRNOT00000024832 2 1 1 89 1 80596247 80599419 TGCTTTGTAGCATCCATGC 59 80596176 80596194 CATCACCCTGGCTCTTACC 60 NA Rattus norvegicus 81 Zfp84 ENSRNOG00000029043 ENSRNOT00000028158 2 1 5 87 1 87704864 87704882 CATGTGTTCCCTGTGTTGG 59 87704933 87707451 CGGAATCTGTATCCGGGAG 60 NA Rattus norvegicus 81 Sirt2 ENSRNOG00000020102 ENSRNOT00000084839,ENSRNOT00000064153 2 2 2 80 1 86961748 86961766 TCTGCCACTACTTCATCCG 59 86961806 86966515 GTTCCAGAGTGTCAATATTCTGC 60 NA Rattus norvegicus 81 AABR07065802.1 ENSRNOG00000047599 ENSRNOT00000075526 2 1 1 60 6 141831410 141831430 GCAGATTCACCATCTCAAGAG 59 141831370 141831388 ATGCTGTTCATTTGCAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acta2 ENSRNOG00000058039 ENSRNOT00000083468 2 1 1 80 1 252539593 252540952 CTTTCATTGGAATGGAGTCGG 59 252539533 252539555 CCTTCCTGATGTCAATATCACAC 59 NA Rattus norvegicus 81 Prss1 ENSRNOG00000032156 ENSRNOT00000040403 2 1 1 102 4 70778235 70778645 CAATGGTGTGAACAACCCA 59 70778711 70778729 CATGCTGCTGGTGATTTCC 60 NA Rattus norvegicus 81 AABR07036187.1 ENSRNOG00000045833 ENSRNOT00000073223 3 1 1 60 12 35613020 35613039 TCGTTCTAGATCAACTGCCA 59 35613060 35613080 TCACTTCCATCATACTTGACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rimkla ENSRNOG00000008625 ENSRNOT00000011586 3 1 1 92 5 138521787 138523761 CTTTCTAGGTGGTGTGGGT 59 138521713 138521731 CAGAAATCCATGCCCAGGA 60 NA Rattus norvegicus 81 Ccdc147 ENSRNOG00000053565 ENSRNOT00000077738 3 1 1 80 1 267726274 267727117 GAGGCTCAGGATGAAATAACAG 59 267727156 267727176 GATTTCTTCCTTCAGCTGGTC 59 NA Rattus norvegicus 81 Fam98b ENSRNOG00000005366 ENSRNOT00000034950 3 1 1 80 3 108976601 108977227 TGGTCGCTTAAAGATTCCTC 58 108977267 108977288 AGTGAAAGACCATAGGTAACTC 57 NA Rattus norvegicus 81 Cystm1 ENSRNOG00000018775 ENSRNOT00000025495 3 1 2 150 18 29191791 29191809 TATCCACAACAGCCAATGG 58 29191922 29232883 CTACCACATACACTGTGGTC 58 NA Rattus norvegicus 81 Prl5a2 ENSRNOG00000039075 ENSRNOT00000088228,ENSRNOT00000059757 3 2 2 80 17 38461285 38462011 GTCATTGCTCAAATTGGTTCG 59 38462052 38462071 AGATGCAATGATGGAAGTCC 58 NA Rattus norvegicus 81 Rn60_X_0586.1 ENSRNOG00000051324 ENSRNOT00000076188 1 1 1 60 X 57715368 57715389 TGATTTCCTGGTTATGTCTCTG 58 57715329 57715347 TGTGTTTCCGATGTACCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562161 ENSRNOG00000005135 ENSRNOT00000006867 1 1 1 80 X 38331091 38331109 GAAAGCTTCCCTCAGTCAC 58 38330560 38331049 ATCCTCTGGATACCTCTTCTG 58 NA Rattus norvegicus 81 Defb30 ENSRNOG00000038758 ENSRNOT00000059211 2 1 1 85 15 46221750 46223335 TCCTCCAGTTAGAAGTGGAG 58 46221684 46221702 ATACATTCCTGCAATGCCC 58 NA Rattus norvegicus 81 Rmdn2 ENSRNOG00000006082 ENSRNOT00000008045 1 1 1 80 6 2256212 2256898 GACCACAAAGAGAAGTTTAGTG 57 2256936 2256957 AGATAGGTCATACATGTCTCCA 58 NA Rattus norvegicus 81 Rmdn2 ENSRNOG00000006082 ENSRNOT00000008045 3 1 1 91 6 2256212 2256898 GACCACAAAGAGAAGTTTAGTG 57 2256949 2256968 TGCGTGTTTGTAGATAGGTC 58 NA Rattus norvegicus 81 Adamtsl3 ENSRNOG00000010840 ENSRNOT00000032106 3 1 1 80 1 144495568 144495586 GGCATCGTCTCATAAGTCC 58 144495630 144510690 GTGACAGAACACTTCGACC 59 NA Rattus norvegicus 81 Cep162 ENSRNOG00000010608 ENSRNOT00000014165,ENSRNOT00000083934 1 2 2 80 8 94913208 94916140 GAAGATGATGGACTGCTTGG 59 94913147 94913168 CTCTTCCATGTCCGTAATAGGT 60 NA Rattus norvegicus 81 Cep162 ENSRNOG00000010608 ENSRNOT00000014165,ENSRNOT00000083934 2 2 2 80 8 94866146 94866167 GCTTAGAAAGGAAGATCAAGCA 59 94864705 94866108 GTGTTTGCTGTATTATCTGCTG 58 NA Rattus norvegicus 81 Olr371 ENSRNOG00000030471 ENSRNOT00000045383 2 1 1 60 1 230451329 230451348 CACTGACAAGGTAGCATCTG 58 230451368 230451389 GACTATAGGGTTCAACATGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhov ENSRNOG00000013380 ENSRNOT00000079339,ENSRNOT00000018277 1 2 2 120 3 111080188 111080383 CACTTTCTCCGTGCAAGTC 59 111079892 111079910 AAAGACATCGGTATCCGGG 59 NA Rattus norvegicus 81 Naa40 ENSRNOG00000021179 ENSRNOT00000028759 2 1 1 80 1 222481971 222482132 GTCCTGTACTGCTATGAAGTG 58 222481911 222481929 CTGCAGGATCTGAATGAGG 58 NA Rattus norvegicus 81 Hpn ENSRNOG00000021097 ENSRNOT00000028644,ENSRNOT00000079631 2 2 2 80 1 89535302 89537996 GCCTCTCACAGAATACATCC 58 89535241 89535259 GTCACTGTACAGACCTTGC 58 NA Rattus norvegicus 81 RGD1308706 ENSRNOG00000017090 ENSRNOT00000023169 1 1 1 96 19 22699950 22705965 ACCAACAGATTCCTGTTGC 58 22706024 22706043 GGTGGTGATTTCTCTGAGTG 58 NA Rattus norvegicus 81 Kptn ENSRNOG00000001493 ENSRNOT00000002043 2 1 1 80 1 78016408 78016602 TTATAAAGGACTCAGGAGACAAGG 60 78016641 78016659 CCAGGTTGTACTCTGAGCC 60 NA Rattus norvegicus 81 Cox20 ENSRNOG00000004553 ENSRNOT00000006154 2 1 1 80 13 96222780 96222803 GAGAATCTATACTGTATGGCTCAC 59 96222839 96222949 ATCTTCTAATTCTGCTGGTCAC 58 NA Rattus norvegicus 81 LOC100361143 ENSRNOG00000059302 ENSRNOT00000072162 3 1 1 60 2 102919452 102919473 AACAGACTCTGAAGATGATCAG 58 102919413 102919433 CAGTTGTTAGCGAGGATAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arx ENSRNOG00000053562 ENSRNOT00000089828,ENSRNOT00000083362 3 2 3 66 X 62367014 62367032 TTCACCAGTTACCAGCTGG 60 62367062 62367080 TGAAGACGTCAGGGTAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arx ENSRNOG00000053562 ENSRNOT00000091240,ENSRNOT00000083362 1 2 3 60 X 62363954 62363972 TGAGCAATCAGTACCAGGA 58 62363995 62364014 GGCGATTTACTCTTGCACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_6_0565.1 ENSRNOG00000042697 ENSRNOT00000058379 2 1 1 60 6 47724237 47724255 AGGTTGCTATTGACATGGG 58 47724277 47724297 TTCTCATTCTGGTACACTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pafah1b3 ENSRNOG00000020481 ENSRNOT00000027774 3 1 1 86 1 82165546 82165759 GATGTCTCTGCACCATCGA 60 82165478 82165498 ATTAGCTGAACCAAGGAGTCC 60 NA Rattus norvegicus 81 Dand5 ENSRNOG00000033368 ENSRNOT00000044133 3 1 1 83 19 25930836 25935727 CTTTGTTCAGGTGATCTCCAG 59 25930773 25930791 TAGAAGGAGGAACAGTGGC 59 NA Rattus norvegicus 81 Dnajb8 ENSRNOG00000034088 ENSRNOT00000050584 1 1 1 62 4 120157484 120157502 GAACGGACATGAACGTGTG 60 120157528 120159019 CTTGGGATACCTGGCTTCC 60 NA DesignNoJunction Rattus norvegicus 81 RGD1561206 ENSRNOG00000016331 ENSRNOT00000021855 2 1 1 60 1 195440624 195440642 AGACAGAAAGCAAACAGGG 58 195440582 195440600 GATCACTCCAGATCCACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrtm2 ENSRNOG00000047085 ENSRNOT00000075420 3 1 1 128 18 28017621 28017639 CAGAAAGCAGGAAACTGGT 58 28017177 28017530 CCACTTGAAATGTAAGCCCA 59 NA InUTR Rattus norvegicus 81 Rn60_X_0637.1 ENSRNOG00000051209 ENSRNOT00000076071 2 1 1 60 X 63031575 63031595 GAGAAGAGAAAGGTCTCTGTC 58 63031615 63031635 CCTAGAGAAGGATTGAGACCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036746.1 ENSRNOG00000052909 ENSRNOT00000071634 1 1 1 60 X 1543529 1543548 GGCTTCTGTTACGAGATGAG 58 1543567 1543589 CCTGAATAATGACGTTGATAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360117 ENSRNOG00000032635 ENSRNOT00000041984 2 1 1 60 3 3390055 3390073 ACCCAGAGACCAAGAAGAC 59 3390095 3390115 GAGGAAATGACCTTCTTGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 H2afb3 ENSRNOG00000029736 ENSRNOT00000043727 2 1 1 60 X 88602360 88602379 CAACGAAGAGGTACCCAGAG 60 88602402 88602420 TGCTGTAGACTGCCAAGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mob4 ENSRNOG00000014980 ENSRNOT00000020536 2 1 1 80 9 61733549 61736624 GAACATTTAAGGCAATTCTGCC 59 61736857 61736877 AGTACAAGTATCAGGATGGCA 59 NA Rattus norvegicus 81 Anxa4 ENSRNOG00000018159 ENSRNOT00000024436,ENSRNOT00000080502 2 2 2 80 4 118553924 118553942 GTCTGATTGAGATCCTGGC 58 118551879 118553880 TCCTTCCATATTGCTGCTG 58 NA Rattus norvegicus 81 Sox9 ENSRNOG00000002607 ENSRNOT00000003511 1 1 1 122 10 101289164 101289182 CATGAACGCCTTCATGGTG 60 101289268 101290103 CTCTCGTTCAGCAGTCTCC 60 NA Rattus norvegicus 81 Mrpl17 ENSRNOG00000019497 ENSRNOT00000050562 1 1 1 80 1 170653133 170653399 CTGGCTCACTGAGAAGGAC 60 170653071 170653090 GTGTAGTTGCCATTCTGACC 59 NA Rattus norvegicus 81 Myh14 ENSRNOG00000020014 ENSRNOT00000091760,ENSRNOT00000027132 1 2 2 80 1 100660248 100665446 ACTCTGGGCTCATTTATACCT 58 100660188 100660206 CCTCCGTGTAGATAGGCAG 59 NA Rattus norvegicus 81 Sh3bgrl2 ENSRNOG00000009613 ENSRNOT00000084852 3 1 2 121 8 91099564 91099582 CCATGTCGGAGGAACAGAG 60 91099664 91115258 GTCATAGTCTCCACAGTATCGA 59 NA Rattus norvegicus 81 Prl4a1 ENSRNOG00000016436 ENSRNOT00000022028,ENSRNOT00000087424 2 2 2 85 17 38712538 38713747 AGTTCCAACTGGAAGTACTACTG 60 38712475 38712493 CATTTCAGCCCACAGATGG 59 NA Rattus norvegicus 81 Mrps23 ENSRNOG00000010363 ENSRNOT00000013771 2 1 1 83 10 75535130 75535150 TCAACCTATGGATCTGGTCAC 59 75535195 75535418 GTACTTCTCCACAAACCGC 59 NA Rattus norvegicus 81 Cyp2b3 ENSRNOG00000033164 ENSRNOT00000077725,ENSRNOT00000034845 2 2 2 80 1 83191363 83192675 AATCATCAGGGAGTCTCCC 58 83192719 83192737 TCCAAAGACAATGGAGCAG 58 NA Rattus norvegicus 81 Ankrd40 ENSRNOG00000002935 ENSRNOT00000067751 3 1 1 82 10 82038368 82038721 TATGGGAGTGGAAGAAGCT 58 82038767 82038785 GATAGTTGGGAACGAAGGG 58 NA Rattus norvegicus 81 Mir3589 ENSRNOG00000036269 ENSRNOT00000054392 1 1 1 60 X 143516997 143517017 GAACTTGGTGATACTCCAGAG 58 143517039 143517057 ATGTTTCTGCCAGGTTAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem100 ENSRNOG00000002434 ENSRNOT00000003297 3 1 1 80 10 77537348 77540253 CTGAGAAAGAGGCAATCCCT 60 77540295 77540314 GTCTCGTTCAACTTCTGGGA 60 NA InUTR Rattus norvegicus 81 LOC100910077 ENSRNOG00000030000 ENSRNOT00000040297 2 1 1 60 8 42613656 42613677 AATATACAGAGACCCATTTCCC 58 42613697 42613716 ACCGTGATAACATAGATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scrt2 ENSRNOG00000005148 ENSRNOT00000006833 1 1 1 257 3 147597078 147597096 CATTTCTGATGGGCGTTCG 60 147597317 147597335 ATAGACACGTAGGCCTTGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910689 ENSRNOG00000046318 ENSRNOT00000072294 3 1 1 80 10 78171045 78171063 TCACCTTCAATGCTGACGT 60 78171104 78172706 CTCCTGGTACCACATAGATCTC 59 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000076734,ENSRNOT00000087781,ENSRNOT00000078903,ENSRNOT00000027487 3 6 7 103 1 215610836 215610854 AACTCTGCAAACAACTGCA 59 215610921 215611167 GTTCATGTCTTCCAGCTCC 58 NA Rattus norvegicus 81 Slc7a1 ENSRNOG00000000924 ENSRNOT00000082850,ENSRNOT00000001234,ENSRNOT00000089804 3 3 3 80 12 8091946 8091966 TTTGTGAAAGGCTCCATTGAG 59 8092007 8094726 CACGTTTGTGTCATTGTTCC 58 NA Rattus norvegicus 81 LOC103691445 ENSRNOG00000054595 ENSRNOT00000090178 2 1 1 60 2 35531947 35531966 TTGCTGTTTCAGAATGTCAC 57 35531906 35531925 GATATAGCCACATAGCGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nhs ENSRNOG00000030759 ENSRNOT00000041924,ENSRNOT00000091746 1 2 2 80 X 34669396 34671799 CAGTCATTCACAGATCCAAGAG 59 34671837 34671858 GAACTCTTGATTTGCTTCTGAC 58 NA Rattus norvegicus 81 Nhs ENSRNOG00000030759 ENSRNOT00000041924,ENSRNOT00000091746 2 2 2 80 X 34669397 34671799 AGTCATTCACAGATCCAAGAG 58 34671839 34671859 GGAACTCTTGATTTGCTTCTG 58 NA Rattus norvegicus 81 AABR07007932.1 ENSRNOG00000052652 ENSRNOT00000084377 1 1 1 60 2 35549409 35549428 ATTCATGTACCTTCAGCCCT 59 35549368 35549386 CACAGACGACACTTTCCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir103-1 ENSRNOG00000035503 ENSRNOT00000053626 1 1 1 60 10 20606727 20606745 TCGGCTTCTTTACAGTGCT 59 20606768 20606787 CATAGCCCTGTACAATGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ms4a12 ENSRNOG00000026387 ENSRNOT00000036564 2 1 1 80 1 227405825 227405844 TTGGAATTCAGCATAGCGTG 59 227405583 227405782 AGCAACCAGGACAGATCTG 59 NA Rattus norvegicus 81 AC115420.1 ENSRNOG00000040249 ENSRNOT00000059520 3 1 1 60 4 157416941 157416960 AGGAGGAAGAGGAGGAAGAG 60 157416982 157417001 TCTTCTTCCTCTTCCTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il5 ENSRNOG00000008111 ENSRNOT00000010729 1 1 1 94 10 39066844 39067385 GAGCAATGAGACGATGAGG 58 39069311 39069332 GATTCTTCAGTATGTCTAGCCC 58 NA Rattus norvegicus 81 Zmym2 ENSRNOG00000008734 ENSRNOT00000011684 3 1 1 80 15 37206045 37206101 ATGTCAAGAAAGTATCAGGGC 58 37209505 37209523 GTTTGGTGTAGGAGAAGGG 58 NA Rattus norvegicus 81 Akap2 ENSRNOG00000011504 ENSRNOT00000015576 3 1 2 81 5 74972259 74981654 GGATGATAGTAGTGTCCTGGAG 59 74981696 74981714 ATAAATCCCTGCCTCCCAG 59 NA Rattus norvegicus 81 Foxa1 ENSRNOG00000009284 ENSRNOT00000009940 3 1 1 67 6 78549554 78549572 ACTGGAACAGCTACTACGC 60 78547256 78547274 GGAGTTCATGTTGCTGACC 59 NA DesignNoJunction Rattus norvegicus 81 Prl2b1 ENSRNOG00000017007 ENSRNOT00000090652,ENSRNOT00000022871 2 2 2 80 17 39546325 39547345 AATCTCTAGGAAGTGATCCGA 58 39547384 39547405 GATGATTTAGAGCATTGGTCCA 59 NA Rattus norvegicus 81 Daxx ENSRNOG00000000477 ENSRNOT00000000559 2 1 1 80 20 5482605 5482624 CCACCGAAGATGAAGATGAG 58 5482384 5482565 CTTCATTATCTCCTTCCTCCTC 58 NA Rattus norvegicus 81 Rnf169 ENSRNOG00000026408 ENSRNOT00000029629 2 1 1 80 1 164923932 164923952 GTGACACAATTCAGGACAGAG 59 164923243 164923895 CTGGAGTTATAGTTGTGATCTTGG 59 NA Rattus norvegicus 81 Plce1 ENSRNOG00000014276 ENSRNOT00000067149,ENSRNOT00000079219 2 2 2 80 1 257427275 257427296 TTGAGTACAATGAAGAAGTCCC 58 257427336 257428347 CCATGTCATAGACCTTTCCC 58 NA Rattus norvegicus 81 Brsk1 ENSRNOG00000017673 ENSRNOT00000031172 1 1 1 80 1 72706830 72706848 TGTGGTAGAGACCATCCAG 58 72701930 72706786 CCATTCTTCTCATCTGCCA 57 NA Rattus norvegicus 81 Rab7a ENSRNOG00000012247 ENSRNOT00000016432,ENSRNOT00000077624 1 2 2 80 4 119924582 119927654 GACTCTGGTGTTGGAAAGAC 59 119924521 119924541 TCCTATTGTGGCTTTGTACTG 58 NA Rattus norvegicus 81 Dnmt1 ENSRNOG00000039859 ENSRNOT00000064932,ENSRNOT00000067325 3 2 2 80 8 21951996 21952015 GAGAGTCTGTGGAGAAACCT 59 21950500 21951954 TGTCATCTTCCTGTTCACCT 59 NA Rattus norvegicus 81 RGD1559536 ENSRNOG00000039250 ENSRNOT00000060113 2 1 1 82 X 42952703 42953619 GTTCAGGCGTCCAGTAGAG 60 42953665 42953683 CATTGGTTGCACAGACTGG 60 NA Rattus norvegicus 81 Micalcl ENSRNOG00000016210 ENSRNOT00000085326,ENSRNOT00000043017 3 2 2 80 1 177214069 177225634 TGAGAGGAGAAACAGATTCAG 57 177225675 177225694 TATTCTTCTCCAGAACCAGC 57 NA Rattus norvegicus 81 Olr148 ENSRNOG00000016993 ENSRNOT00000022789 2 1 1 60 1 169305662 169305682 TCAACCATACTGTCATAGCCC 60 169305704 169305722 ACAATAGCCACACTACGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ifitm2 ENSRNOG00000014936 ENSRNOT00000020216 2 1 1 82 1 213751149 213751168 TCTGGTCCCTGTTCAATACG 60 213750535 213751104 GTCCCTGGACTTCACAGAG 59 NA Rattus norvegicus 81 Dbnl ENSRNOG00000012378 ENSRNOT00000017375 1 1 1 80 14 86036541 86039077 GCCAACTTCCTAAAGGGTG 59 86039120 86039139 CTTCTCCATGATGCACTCAG 59 NA Rattus norvegicus 81 AABR07073531.1 ENSRNOG00000038397 ENSRNOT00000058474 3 1 1 82 X 45596477 45596881 CATGGTAACTTCCAGGCCT 59 45596413 45596432 CGGATGATGTCATCCTTGTC 59 NA Rattus norvegicus 81 Olr1320 ENSRNOG00000058809 ENSRNOT00000090359 3 1 1 60 8 43628583 43628603 CACCATGTCTTACCAAGTCTG 59 43628623 43628643 AATGAAGCCCATACCATACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fastkd1 ENSRNOG00000024335 ENSRNOT00000036585 1 1 1 80 3 55940679 55942197 CTTCTCAGTCGTTTGGAAGC 59 55940618 55940638 AGGATATGGAAGCATGGAGAG 59 NA Rattus norvegicus 81 Zfp384 ENSRNOG00000017066 ENSRNOT00000081640,ENSRNOT00000023192,ENSRNOT00000055985,ENSRNOT00000023240,ENSRNOT00000036654 1 5 6 80 4 157547895 157550323 CTCTCCAACCTGCAGTCTC 60 157550367 157550385 TGTGTATGCTCGGTGACAG 60 NA Rattus norvegicus 81 LOC100360095 ENSRNOG00000043131 ENSRNOT00000068043 3 1 1 66 8 38154249 38154268 TATCTTGCTGCTCCTACTGG 59 38153337 38154220 CTCAAAGCACACCAAAGCT 59 NA DesignNoJunction Rattus norvegicus 81 Arhgef5 ENSRNOG00000005506 ENSRNOT00000044780 3 1 1 80 4 72730105 72731381 CGCACTGAGACTCAAAGTG 59 72731423 72731443 ACACTCAAGTAGGTCCAACTC 60 NA Rattus norvegicus 81 AABR07018269.1 ENSRNOG00000031720 ENSRNOT00000041154 2 1 1 80 15 49666826 49666844 AAAGCTGACCAAATGGCAG 59 49666145 49666782 ACCATGACACCTAGGTCTG 58 NA Rattus norvegicus 81 Scgn ENSRNOG00000016628 ENSRNOT00000022329 3 1 1 80 17 43367108 43370076 CTGATGAAAGAGCTTGCCAG 59 43370119 43370137 ATCCAAGGGAGTTTCCAGG 59 NA Rattus norvegicus 81 Fmo4 ENSRNOG00000003400 ENSRNOT00000004599,ENSRNOT00000004577 2 2 2 80 13 80693274 80694662 CAGCACAGGTGTTTCTCAG 59 80693212 80693232 TCATATTCAAAGGGTAGCCAC 58 NA Rattus norvegicus 81 Rfx7 ENSRNOG00000060367 ENSRNOT00000086841 1 1 1 83 8 79268287 79271511 ACCAGCAGGACTTAAAGGA 58 79271555 79271576 GTCTTTACTTGAGGTTGAAAGG 57 NA Rattus norvegicus 81 Lrfn1 ENSRNOG00000019869 ENSRNOT00000057073 2 1 2 121 1 85299514 85299532 GAACTTACGTCCAGCTCTG 58 85292554 85299431 GGGATCATCCTGTAGACTAGG 59 NA Rattus norvegicus 81 Mtmr7 ENSRNOG00000011420 ENSRNOT00000065327,ENSRNOT00000086899 1 2 2 80 16 54804138 54804158 GTGAAGAATACAAGCGAATGG 58 54804198 54814927 AGTCACAAACTCTGTAGTCTC 57 NA Rattus norvegicus 81 Scnn1a ENSRNOG00000019368 ENSRNOT00000067271 3 1 1 80 4 157847886 157853164 AACCAGGCGAATTATTCCA 57 157853206 157853226 GAGATTGGAGTTGTTCTTGTC 57 NA Rattus norvegicus 81 RGD1359158 ENSRNOG00000027161 ENSRNOT00000037500 1 1 1 60 1 239209399 239223102 CTGTCAAAGCCTAAGAAATGTG 58 239209360 239209380 TGTGGTAAGAGTCCTTTACTG 57 NA DesignNoJunction Rattus norvegicus 81 Lsr ENSRNOG00000021053 ENSRNOT00000044678,ENSRNOT00000028585 1 2 2 80 1 89384640 89384749 TATCTTCAGAAGTACGAAGTGG 58 89384581 89384603 TCTCCATATAGTATAGGACCCTC 58 NA Rattus norvegicus 81 Rpap1 ENSRNOG00000005483 ENSRNOT00000007299 3 1 1 81 3 111583285 111583303 TCACGATGAAGACCCTGAG 59 111582992 111583243 ATCCCGTTCAACAATCTTAGAC 59 NA Rattus norvegicus 81 Capg ENSRNOG00000013668 ENSRNOT00000018562 1 1 1 82 4 100414159 100414361 CTCAAGTATCGGGAGGGTG 59 100414407 100414425 TAGAGCTTCCTGATGGCTG 59 NA Rattus norvegicus 81 Nxpe3 ENSRNOG00000001608 ENSRNOT00000002188,ENSRNOT00000079598 2 2 2 80 11 47224712 47224733 TATCAAGATGCCAATCAACTCC 59 47224774 47232863 TCTGGGTCATCAGTTTCCT 58 NA Rattus norvegicus 81 Scn2a ENSRNOG00000005018 ENSRNOT00000087242,ENSRNOT00000007069 3 2 2 80 3 51782775 51782796 GCCTTAGTTTAATGGAACTCGG 60 51782837 51784670 TGAAGACTCTAAGCAGCCG 60 NA Rattus norvegicus 81 Rrp1 ENSRNOG00000001203 ENSRNOT00000001597 2 1 1 80 20 10989917 10989935 AAGTAGGGCTGACCTTGAG 59 10989978 10990704 TCGTAGTCAAACTGGAGGAC 59 NA Rattus norvegicus 81 Olr1222 ENSRNOG00000030341 ENSRNOT00000042601 3 1 1 60 8 41936969 41936989 CTGTGGAGAATGACTCTTCTG 58 41937009 41937029 TCAGGTTGGTCTGTTAATCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tceb3 ENSRNOG00000010902 ENSRNOT00000064596 1 1 1 80 5 154355645 154357075 TAGACATTCTTGTGGAGACTGG 60 154355586 154355604 CTCTGGCAAAGTTTCCCAC 59 NA Rattus norvegicus 81 Jak2 ENSRNOG00000059968 ENSRNOT00000087011 3 1 1 80 1 247451782 247455103 ATATTCTGGTATGCTCCCGA 58 247455146 247455164 CAGAACCACACCAAAGCTC 59 NA Rattus norvegicus 81 LOC102550314 ENSRNOG00000050229 ENSRNOT00000074473 1 1 2 80 15 5808186 5808342 ATTCAGCAGGTCTTGGTCC 60 5808386 5808404 TCGGTTGAAGGTTCTGGTC 60 NA Rattus norvegicus 81 LOC102550314 ENSRNOG00000050229 ENSRNOT00000074473 2 1 2 80 15 5808183 5808340 GGTATTCAGCAGGTCTTGGT 60 5808383 5808401 GTTGAAGGTTCTGGTCCCA 60 NA Rattus norvegicus 81 Flna ENSRNOG00000054890 ENSRNOT00000079889 3 1 1 80 X 156469010 156469123 AACAGGAACTCATAAGGTGAC 58 156469164 156469183 GACTTGTCCACATACACCTC 58 NA Rattus norvegicus 81 LOC100360397 ENSRNOG00000011304 ENSRNOT00000015016 3 1 1 115 1 248647923 248647941 CTTCTTCCTTCACCAGCGA 60 248648017 248649441 TTAGTTTCATCTGGCTTCAGGA 60 NA Rattus norvegicus 81 Pcdh17 ENSRNOG00000008970 ENSRNOT00000045882 2 1 1 80 15 67588826 67643253 CAACCACTTGAACAAGAACC 58 67643293 67643314 CCAACATCTATCAGAATGACCA 58 NA Rattus norvegicus 81 Rapgef6 ENSRNOG00000009995 ENSRNOT00000013481 1 1 1 80 10 39978261 39978281 TTGTAGAAGTAGTGGAGCCTG 59 39978320 39982052 GCCCATTGACTTCCATTATCTG 60 NA Rattus norvegicus 81 Dgkd ENSRNOG00000023238 ENSRNOT00000035338 2 1 1 80 9 95060179 95060199 GCTTGGACGCAAAGATATCTC 60 95060240 95061164 TGTTCTTAGTCCGACTCCTG 59 NA Rattus norvegicus 81 Hpcal1 ENSRNOG00000005492 ENSRNOT00000007374 3 1 1 81 6 43102322 43102340 CCTTCAGCATGTACGACCT 60 43102385 43103933 ATCTTGTAGATGGCCTGCA 59 NA Rattus norvegicus 81 Pnpla1 ENSRNOG00000028622 ENSRNOT00000033064 1 1 1 80 20 6123411 6123433 CAGTTCTCCTTGGAGAATATCAC 59 6123468 6124222 GTAGTAATATTCCTGCAGGATCAC 59 NA Rattus norvegicus 81 Fhl2 ENSRNOG00000016866 ENSRNOT00000023014 1 1 1 105 9 49949993 49950011 CTAAAGGAGGAGAACCCGC 60 49938454 49949924 AGGACAAGTCCTTGCAGTC 60 NA Rattus norvegicus 81 Stmnd1 ENSRNOG00000031595 ENSRNOT00000051732 1 1 1 80 17 18812679 18817009 TAAATTCAGACCCAGTGGC 57 18812617 18812636 TGTCTGATGACTTTGGTCTC 57 NA Rattus norvegicus 81 LOC100909919 ENSRNOG00000031054 ENSRNOT00000048537 3 1 1 60 8 42664221 42664240 GTTGTGGTCTTTGTTCTGGT 59 42664263 42664281 AGACAAACGTGGTACTGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acer2 ENSRNOG00000007637 ENSRNOT00000010056 1 1 1 80 5 105243345 105244073 TAGTTGTAGTGGGAATCGGA 58 105244115 105244134 GAATGGCAAGTTCATCAAGC 58 NA Rattus norvegicus 81 Fam124a ENSRNOG00000009802 ENSRNOT00000083381 2 1 2 102 15 45712980 45718134 GAAGGCTTGCATGTCATCC 59 45718199 45721084 CTGTAGTCGGACTTAGTGGG 59 NA InUTR Rattus norvegicus 81 Mir3563 ENSRNOG00000035507 ENSRNOT00000053630 2 1 1 60 6 133859355 133859374 ACCGTCCCACATACATACTC 59 133859314 133859333 GCGGTACTTGAAGAAATGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1309079 ENSRNOG00000008519 ENSRNOT00000011263 1 1 2 80 8 102127403 102139609 CCGAAAGTACCCATTATGAACC 59 102127344 102127363 TCATGATTGCCAAGATCCGT 60 NA Rattus norvegicus 81 RGD1309079 ENSRNOG00000008519 ENSRNOT00000011263,ENSRNOT00000086491 1 2 2 80 8 102146738 102146757 GGTAATCATTGTGGATGCTG 57 102143550 102143568 ACATCCCAATTCTCAGGCT 59 NA DesignNoJunction Rattus norvegicus 81 Oxct1 ENSRNOG00000043094 ENSRNOT00000065313 2 1 1 80 2 53923611 53925391 GATGGCATGTATGCTAACCTG 59 53925430 53925451 GAGATGAACAGTCATGTTTGGG 60 NA Rattus norvegicus 81 Lrguk ENSRNOG00000008775 ENSRNOT00000082175,ENSRNOT00000011692 1 2 2 80 4 61461002 61463016 CAATTCAGACCAAACCCGA 58 61463057 61463078 TAATCTTCTGCTGATCTAGCTC 57 NA Rattus norvegicus 81 S1pr2 ENSRNOG00000020653 ENSRNOT00000028034 1 1 1 149 8 21995777 21995795 AACAGTCACCAAAGTCAGC 58 21987494 21987512 TCTGAGTATAAACCGCCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fam175a ENSRNOG00000002165 ENSRNOT00000002956 2 1 1 80 14 10424796 10426826 CTGACTCAGATACGGAGGG 59 10426869 10426888 TGTCCATCTGTGAGTCAGTG 60 NA Rattus norvegicus 81 Fem1b ENSRNOG00000007077 ENSRNOT00000009368 2 1 1 149 8 67707932 67707950 CTATGTCAGTCAGCAGGGA 59 67696727 67707819 TCAATGACATACCCGTCGA 59 NA Rattus norvegicus 81 RGD1306995 ENSRNOG00000042555 ENSRNOT00000030268 1 1 1 81 11 64489075 64489098 CACAAACAAAGTGTACTATCCCTC 60 64489133 64490036 CTCAAGTTCTGTAGTGATATCAGC 59 NA Rattus norvegicus 81 Rplp1 ENSRNOG00000013874 ENSRNOT00000018820 1 1 1 80 8 66863342 66863360 TTCTGTCTCTGAGCTTGCC 60 66862871 66863300 TTGATCTTATCCTCCGTGACC 59 NA Rattus norvegicus 81 Espl1 ENSRNOG00000012835 ENSRNOT00000017314 2 1 1 80 7 143922135 143922337 TCAATCGCTAAGGAGGCTG 60 143922379 143922399 AGGGTTTAGCACATAGAAGGT 59 NA Rattus norvegicus 81 Cdk15 ENSRNOG00000022899 ENSRNOT00000071819 1 1 1 80 9 66059741 66059763 AGAACTTGAGAAGGGTGAAGG 60 66064800 66064820 TTTAGAGCTACCAGTTGTCCA 59 NA Rattus norvegicus 81 Acox3 ENSRNOG00000008474 ENSRNOT00000049798 1 1 1 80 14 80341328 80341346 TCACCGAACTGAGTCATGG 59 80338217 80341285 AGATGAATTCCTGGGTAGCA 59 NA Rattus norvegicus 81 AABR07012323.1 ENSRNOG00000046752 ENSRNOT00000074852 2 1 1 98 2 193286800 193286818 CAAAGAGCACAGCACAGTG 60 193286880 193294489 TTGTAGCACAGCAGGACTC 60 NA DesignRelaxed Rattus norvegicus 81 Mul1 ENSRNOG00000016010 ENSRNOT00000021833 3 1 1 93 5 156859649 156859668 GTTTGTGGAGAACTGCAAGG 60 156859723 156860704 ATAGTCATTCCACAGGTGGG 59 NA Rattus norvegicus 81 LOC686066 ENSRNOG00000031434 ENSRNOT00000040570 3 1 1 60 3 8955419 8955437 GTTCAAGGTCCACTGTAGC 58 8955377 8955401 CTTCTTCTCATTGTCTGTGATAACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC367117 ENSRNOG00000031132 ENSRNOT00000046322 1 1 1 80 8 86284747 86286968 AGCAGCTGTGTTTATCAATGAC 60 86284688 86284708 TGGTAGCACACTATTGTCCTG 60 NA Rattus norvegicus 81 Zfp330 ENSRNOG00000003461 ENSRNOT00000080337,ENSRNOT00000004614 1 2 2 80 19 23937395 23937793 CTTAGCATGTCAACACGCTC 60 23937334 23937353 AGCATCATACCCAGAAGCTC 60 NA Rattus norvegicus 81 Pex11g ENSRNOG00000028100 ENSRNOT00000037564 2 1 1 103 12 2003569 2003587 CGATGCTAAGGTCCTCCAG 60 2001973 2003502 TTGTCCACAGGGACTTGAC 60 NA Rattus norvegicus 81 Hic1 ENSRNOG00000046405 ENSRNOT00000004143 2 1 1 64 10 62008890 62008908 CTTGGCTTATGGTGAGCCT 60 62008844 62008862 CTTTGCCACATGGAATGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adamts8 ENSRNOG00000005574 ENSRNOT00000007358 2 1 1 81 8 32018935 32018955 GCTTCGTGGAAATACTTCTGG 59 32018997 32026321 ACTGTGAGGATGTGGTTCTG 60 NA Rattus norvegicus 81 Sept8 ENSRNOG00000007462 ENSRNOT00000065229,ENSRNOT00000083162,ENSRNOT00000091236 1 3 3 80 10 38891769 38892620 ATAGCAAGGTGAACATAATCCC 58 38892658 38892679 TCTTGATCTTGAACTTGTGGAG 58 NA Rattus norvegicus 81 Efemp2 ENSRNOG00000020587 ENSRNOT00000080520,ENSRNOT00000052315,ENSRNOT00000078619 1 3 3 80 1 220857894 220857912 ACTCCTATGGGACCTTCCT 59 220857955 220859648 CATCGATATCACTGCAGGAG 58 NA Rattus norvegicus 81 Commd5 ENSRNOG00000050582 ENSRNOT00000075405 3 1 1 60 7 117964045 117964064 TAGTCTAAAGCCAGATGCCT 58 117964087 117964105 TAGATCCTGAGGAATGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smox ENSRNOG00000021255 ENSRNOT00000079264,ENSRNOT00000028876 2 2 2 80 3 124088653 124093235 GAGCGTGAAACTTGGACAC 60 124093277 124093297 AGTTGATAGATAGGGTTCCCG 59 NA Rattus norvegicus 81 Dnttip2 ENSRNOG00000025025 ENSRNOT00000036931 1 1 1 80 2 225861347 225862935 GAAACAGCGCAGGAAAGAG 60 225862979 225862997 AGTTCGTCTGTCAGTTCCG 60 NA Rattus norvegicus 81 Nedd9 ENSRNOG00000014548 ENSRNOT00000078310,ENSRNOT00000067374,ENSRNOT00000090794 2 3 3 83 17 23175161 23177433 GAGCATCATCAGCTGAGTC 58 23177478 23177498 GGGTTTCCATTTGGAAATGTC 58 NA Rattus norvegicus 81 Med27 ENSRNOG00000013933 ENSRNOT00000019157 1 1 1 80 3 8032857 8032875 ATGAGGAGCCTGTTCATCG 60 8032917 8041829 TATGTCTAGCTTTCCGTCCTC 59 NA Rattus norvegicus 81 RGD1563383 ENSRNOG00000048925 ENSRNOT00000072026 1 1 1 60 X 49530119 49530138 TAGATGGAATGACCTGCCTC 59 49530078 49530099 AGGGTATAAGATGAAGTGTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_2448.1 ENSRNOG00000051301 ENSRNOT00000075935 1 1 1 60 1 237441577 237441597 TCCTCCAAGTTATCAAGTCCA 59 237441619 237441637 ACCACACCCTTATCTACCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103690273 ENSRNOG00000053485 ENSRNOT00000088755 2 1 1 60 8 43523355 43523374 CCATTGATCTACAGCCTCAG 58 43523314 43523332 GACGTAGGACAATCCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rai14 ENSRNOG00000028872 ENSRNOT00000040348 2 1 2 80 2 60563578 60564085 AGGATGCTGATTTAAAGACCC 58 60562467 60562487 GAGTTCCACTTCTTTCTGAGC 59 NA Rattus norvegicus 81 LOC100912263 ENSRNOG00000049014 ENSRNOT00000071400 3 1 1 82 1 71338882 71338900 GTTCCTGACTGGGAAGAGG 59 71335805 71338836 CTGAGGGAAAGAGCAGGAC 60 NA Rattus norvegicus 81 Olr1321 ENSRNOG00000055420 ENSRNOT00000085286 2 1 1 60 8 43645026 43645044 ATTGACCTCTGCCATTCCA 59 43645068 43645086 TCACTGCCACAAAGTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nop58 ENSRNOG00000016486 ENSRNOT00000022676,ENSRNOT00000091283 1 2 2 80 9 66507349 66507368 AATGGATGGCTTGATTCCTG 58 66507411 66508975 TATCGAGATAGGCTGTGGG 58 NA Rattus norvegicus 81 Hspa9 ENSRNOG00000019525 ENSRNOT00000026696 2 1 1 80 18 27734094 27734112 TGACATTGATGCCAATGGG 59 27732961 27734053 GACTGGATTACAATCTGTTGCT 59 NA Rattus norvegicus 81 Olr1737 ENSRNOG00000048048 ENSRNOT00000040388 2 1 1 60 20 1782080 1782101 TTCTCTTCACCTACATCTGTCC 59 1782120 1782140 GCAATGATTCTGTCCTGATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1350 ENSRNOG00000030424 ENSRNOT00000052361 1 1 1 60 9 99753950 99753968 CTACACCCTGGTCATTCCC 60 99753991 99754010 CACATCCTTGTTCCTCAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptger4 ENSRNOG00000013240 ENSRNOT00000017886 2 1 1 70 2 54962607 54962625 TCTTACTCATCGCCACCTC 59 54953400 54962573 GTTGATGAACACTCGCACC 60 NA DesignNoJunction Rattus norvegicus 81 Zfp518b ENSRNOG00000028534 ENSRNOT00000037291 3 1 1 60 14 76866676 76866697 GAAATGAAACGGAAACCATCTC 58 76866718 76866736 GGCTTGAAGTTCCTAACCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1735 ENSRNOG00000050043 ENSRNOT00000048856 1 1 1 60 20 1750475 1750497 GTTCTCTTTAACTACATCCGTCC 59 1750516 1750535 CAATGATTCGCTCCTGATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dpysl4 ENSRNOG00000027582 ENSRNOT00000029587 2 1 1 80 1 211428948 211428966 CTTACACGTGGACATTCCC 58 211429010 211430604 GAGTTCACACCTTTGTCCC 58 NA Rattus norvegicus 81 Itga11 ENSRNOG00000006723 ENSRNOT00000008971 3 1 1 80 8 67665168 67665186 ATGCTTACAGTGCAGTCCT 59 67665229 67668998 TGTCTGAGTCATCCTTCTGG 59 NA Rattus norvegicus 81 LOC499542 ENSRNOG00000032427 ENSRNOT00000046481 3 1 1 87 2 61756296 61756317 TTTACAAGGACTTCAATGTGGG 59 61752630 61756248 GAAACAGTTCTGGTGCCAG 59 NA Rattus norvegicus 81 Veph1 ENSRNOG00000012427 ENSRNOT00000016621,ENSRNOT00000088559,ENSRNOT00000090700 1 3 3 80 2 158091957 158091975 GAGCAGACAGAACAGTACC 58 158083024 158091913 ACATTTCTGAACCACCTCC 57 NA Rattus norvegicus 81 Spag9 ENSRNOG00000002749 ENSRNOT00000003777,ENSRNOT00000085681 1 2 2 80 10 81808991 81809010 AAGTCTGGTGTGGCTATAGG 59 81809050 81811401 GGTGTGCATCAAATGATTTCTC 59 NA Rattus norvegicus 81 Dbh ENSRNOG00000006641 ENSRNOT00000061201,ENSRNOT00000070887 3 2 2 81 3 5720480 5720774 CACTTTCAGGAGATCAGAATGC 60 5721198 5721217 TGTTGTATGTGCACGAAGTG 59 NA Rattus norvegicus 81 Pcdhga2 ENSRNOG00000034126 ENSRNOT00000043154 1 1 1 60 18 30815886 30815904 AATATGCCCGTAGGAACCC 59 30815926 30815946 TGTATCCCTCATCAGTGTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lama5 ENSRNOG00000053691 ENSRNOT00000081226 1 1 1 80 3 175555070 175555186 ACAGCTCAGAAGGTTTCCC 60 175555008 175555026 AATAGTCCCAAGGAGCCAG 59 NA Rattus norvegicus 81 Pcdhgb8 ENSRNOG00000027220 ENSRNOT00000026967 1 1 1 63 18 30911847 30911865 AGTGAGTGTCACTGAGGAG 58 30911892 30912589 TGCTTGGTGGTTAGAAGCA 60 NA DesignNoJunction Rattus norvegicus 81 Foxp1 ENSRNOG00000009184 ENSRNOT00000013271 2 1 1 80 4 131391619 131403379 GTTAGAGCTACAGCTTGCA 58 131391557 131391576 TTGGGTTCTGTAGACTTCAC 57 NA Rattus norvegicus 81 Ly6d ENSRNOG00000026133 ENSRNOT00000036268 2 1 1 83 7 115994025 115994044 CAGCAGTGACAACTGTAGGA 60 115993814 115993979 TTCAGAGGCTCCACTTTGG 60 NA Rattus norvegicus 81 Olr1253 ENSRNOG00000046873 ENSRNOT00000044859 2 1 1 60 8 42377046 42377065 AACTTGGCCTTTGTAGACCT 59 42377005 42377025 AGTTCATCAACATTTGCGGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csnk2a1 ENSRNOG00000005276 ENSRNOT00000007558 2 1 1 80 3 147743573 147743592 ACATTGTGAAAGACCCTGTG 58 147744097 147744888 GGTACAATTGCTTGAAGTCTG 58 NA Rattus norvegicus 81 Ddx1 ENSRNOG00000006652 ENSRNOT00000009100 1 1 1 80 6 38447786 38447808 AGTGTATGAGACTCTGAAAGACC 60 38446259 38447746 TTGTTGAGCACAGAAGCAC 59 NA Rattus norvegicus 81 Thsd7b ENSRNOG00000003878 ENSRNOT00000005212 3 1 1 80 13 46342834 46342858 CTATAGAGATAGGTTTCCAAACCAG 59 46342894 46362354 GCATACAAAGGCTTAACAGGG 60 NA Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000077623,ENSRNOT00000081496,ENSRNOT00000021278 2 3 6 60 1 262013560 262013580 CTCTTCTACTGGACGGATGAG 60 262013520 262013538 CTGACTGCCTGAACTTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp467 ENSRNOG00000007707 ENSRNOT00000010377 3 1 2 91 4 78074720 78075372 CTCTTTGGGATTCTCAGTGG 58 78074648 78074668 TAGATGACATCTTCTCCTGGG 59 NA Rattus norvegicus 81 Trim27 ENSRNOG00000055917 ENSRNOT00000077363 1 1 1 80 17 45614699 45615490 GAGGCTCAATTATACTCAGTTGAC 59 45614642 45614666 CCGAAGATTATCTGAAAGAATCAGG 60 NA Rattus norvegicus 81 Klk1c8 ENSRNOG00000048901 ENSRNOT00000072124 2 1 1 82 1 100040337 100040718 TATGCAAGGGTGACTCAGG 59 100040764 100040782 ACCACATGGCATAGAACCC 60 NA Rattus norvegicus 81 Rad23a ENSRNOG00000003026 ENSRNOT00000004042,ENSRNOT00000084123 1 2 2 83 19 25953641 25955248 TGATGAGACGGTGAAGGTG 59 25953576 25953594 ATGAGTTTCTGTCCAGCCA 59 NA Rattus norvegicus 81 Xrcc2 ENSRNOG00000007493 ENSRNOT00000010025 1 1 1 80 4 5849793 5849811 GACTTGAAGGCAGAAGCTC 59 5849855 5857215 GAATATCACCGTGCACTGG 59 NA Rattus norvegicus 81 Xrcc2 ENSRNOG00000007493 ENSRNOT00000010025 2 1 1 81 4 5849793 5849811 GACTTGAAGGCAGAAGCTC 59 5849856 5857216 AGAATATCACCGTGCACTG 58 NA Rattus norvegicus 81 Mageb16 ENSRNOG00000029408 ENSRNOT00000042568 1 1 1 116 X 47009348 47024045 TCAAACAGTGAGCTGTTGC 59 46979157 46979180 GCATATTCTGGATTCTTCTGAGAC 60 NA InUTR Rattus norvegicus 81 LOC100911274 ENSRNOG00000012705 ENSRNOT00000017241 1 1 1 80 10 85636049 85636069 CTTGGAGACCAACAAATACTG 57 85635811 85636008 TTGTCTGATCTGATGCTGAG 57 NA Rattus norvegicus 81 LOC100911274 ENSRNOG00000012705 ENSRNOT00000017241 2 1 1 80 10 85636048 85636068 TTGGAGACCAACAAATACTGC 59 85635810 85636008 TTTGTCTGATCTGATGCTGAG 58 NA Rattus norvegicus 81 Vac14 ENSRNOG00000017219 ENSRNOT00000088770 1 1 2 64 19 41010090 41010108 CAACCCTGAGGATTCCCTG 60 41004670 41004688 TTTCCTTTCACTTGCCAGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr234 ENSRNOG00000033512 ENSRNOT00000051038 3 1 1 60 1 171274869 171274888 TCAGCAGATACTTACAGCAC 58 171274910 171274929 CTAGGAGGATTACCACACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stx12 ENSRNOG00000011804 ENSRNOT00000085573,ENSRNOT00000017227,ENSRNOT00000078048 2 3 3 80 5 151051033 151052228 CTCATTTGACAGCCATGAGG 59 151050972 151050990 AGTTCCAGGTCTTGCTCAG 59 NA Rattus norvegicus 81 Gmfg ENSRNOG00000019838 ENSRNOT00000026891 1 1 1 81 1 85313090 85313108 CTGCAAGCCTGAACAACAG 60 85312641 85313048 TTCAAACACCTTTGTAAGCTCC 60 NA Rattus norvegicus 81 Oprk1 ENSRNOG00000007647 ENSRNOT00000010254 1 1 1 80 5 13749934 13749952 TGGCTACTGGCATCATCTG 60 13746509 13749893 TTCAATGACATCCACATCTTCC 59 NA Rattus norvegicus 81 LOC102556121 ENSRNOG00000045669 ENSRNOT00000072482 2 1 1 110 10 81984637 81984655 AAGTTACCAGAGCCTCCTC 58 81984729 81985775 ATGTCTTTGTCCTTCCGGA 59 NA Rattus norvegicus 81 LOC102556121 ENSRNOG00000045669 ENSRNOT00000072482 3 1 1 111 10 81984635 81984655 TTAAGTTACCAGAGCCTCCTC 59 81984728 81985774 TGTCTTTGTCCTTCCGGAG 59 NA Rattus norvegicus 81 Stub1 ENSRNOG00000019798 ENSRNOT00000026921 1 1 1 85 10 15198453 15198656 CCAAGCACGATAAATACATGG 58 15198302 15198321 GTAGTCAGGGATATCTCGCT 58 NA Rattus norvegicus 81 Stub1 ENSRNOG00000019798 ENSRNOT00000026921 2 1 1 86 10 15198453 15198656 CCAAGCACGATAAATACATGG 58 15198301 15198320 AGTAGTCAGGGATATCTCGC 58 NA Rattus norvegicus 81 Zkscan3 ENSRNOG00000055000 ENSRNOT00000081063,ENSRNOT00000080655 3 2 2 81 17 45256560 45256581 GGATTCATCTCAGATGAACCTC 58 45256623 45261709 TTGCATGTTCTCATCCAGG 58 NA Rattus norvegicus 81 Top1mt ENSRNOG00000007500 ENSRNOT00000009965,ENSRNOT00000088064 1 2 2 80 7 116701682 116702379 TGTAGCAGAGATTCCAAGATCC 60 116701623 116701642 CCACATGACTGTGTTATCCG 59 NA Rattus norvegicus 81 Tlr9 ENSRNOG00000048161 ENSRNOT00000074194 3 1 1 116 8 114916215 114917034 TCCATCATGGTTCTCTGTCG 60 114917112 114917131 CAGTTCACAGGGTAGGAAGG 60 NA InUTR Rattus norvegicus 81 Mir3547 ENSRNOG00000047763 ENSRNOT00000071303 3 1 1 60 10 14603222 14603240 ACTTCCAAGGTGGGAAGAG 59 14603180 14603201 TCAAGAATAGTCCTCACATGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc22a25 ENSRNOG00000017964 ENSRNOT00000024234 3 1 1 80 1 224613258 224668194 TGTCCCTTGTGAGATTTGTG 58 224613197 224613218 GGAAGACATTGATCCTTAGGTG 59 NA Rattus norvegicus 81 Pycr2 ENSRNOG00000003267 ENSRNOT00000004379 1 1 1 80 13 99185015 99185035 GTCGGCTCACAAGATAATAGC 59 99185076 99186199 AGATTCACACCCATCTTCCT 59 NA Rattus norvegicus 81 Polr3e ENSRNOG00000016960 ENSRNOT00000040963 2 1 1 80 1 190859217 190862153 CTCTTTCAGTATCCTGTTCGTC 59 190862193 190862212 CTGTTTGGGCTTGATCTTGG 60 NA Rattus norvegicus 81 Slc22a4 ENSRNOG00000046195 ENSRNOT00000058907 1 1 1 80 10 39336841 39336860 CATTTGGACCTGTTCAAGGA 58 39335177 39336799 CACTGAGGTTACATCTGCAC 59 NA Rattus norvegicus 81 Slc22a4 ENSRNOG00000046195 ENSRNOT00000058907 3 1 1 80 10 39336850 39336868 AAGTGCTTCATTTGGACCT 57 39335185 39336806 TTACATCTGCACAGCATCC 58 NA Rattus norvegicus 81 Rn60_X_0554.1 ENSRNOG00000029005 ENSRNOT00000050742 2 1 1 60 X 55114132 55114152 TCAAGGCAATATCATCACCAG 58 55114092 55114110 GTTCACCATGTTCTCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363537 ENSRNOG00000047067 ENSRNOT00000071701 1 1 1 80 4 6029700 6029721 TCAAGTTCCACATCAAGTTCC 59 6029763 6029781 CGTCATCGGTCATCTTCAC 58 NA Rattus norvegicus 81 RT1-M6-2 ENSRNOG00000040052 ENSRNOT00000041500 1 1 1 80 20 2078119 2078137 GGGAGGAGCAGAAATACAC 58 2078180 2078320 AAGTTGCTGGTTTCCATCTC 59 NA Rattus norvegicus 81 Shpk ENSRNOG00000019458 ENSRNOT00000026351 3 1 1 80 10 59783161 59787949 ATGACAGACCTAGGTCTGG 58 59787993 59788011 GGTATCTTTCTGCTGTGCA 58 NA Rattus norvegicus 81 Rgl2 ENSRNOG00000000474 ENSRNOT00000000554 2 1 1 82 20 5460837 5460855 TATGACCTCCGACCTAACC 58 5460662 5460791 GATACACGGTGACTCTGAG 57 NA Rattus norvegicus 81 RGD1565410 ENSRNOG00000037375 ENSRNOT00000082405 2 1 1 80 7 116501812 116503573 GAAGCTGTAAAGGACTCTGTG 59 116501752 116501772 AGTTCTTTGAGGAAACTTGGG 59 NA Rattus norvegicus 81 Afap1 ENSRNOG00000060665 ENSRNOT00000090597,ENSRNOT00000089006 3 2 2 80 14 79960054 79960634 CTGGAGAAGAAATTGTCTTCAGAG 60 79959997 79960016 TCCATTACACGTGGTGACTC 60 NA Rattus norvegicus 81 Gzmk ENSRNOG00000010661 ENSRNOT00000014319 2 1 1 88 2 45069371 45070285 ATTCCTGCAAGGGTGACTC 60 45069301 45069321 GGAGATGCCACATTTATAGCC 59 NA Rattus norvegicus 81 Sept9 ENSRNOG00000002807 ENSRNOT00000003891 1 1 1 80 10 106333769 106341826 TTCAGACGAGAGTTTAGAATGG 58 106341866 106341885 TGTAGCTTCATTTCCGTCAG 58 NA Rattus norvegicus 81 Apoo ENSRNOG00000046918 ENSRNOT00000073955 3 1 1 80 X 63542290 63544451 ATGAAGATCGATGAGCTCTC 57 63544494 63544512 TTCAAGTTGAGTCCTTGGC 58 NA Rattus norvegicus 81 Slc36a1 ENSRNOG00000012356 ENSRNOT00000016755,ENSRNOT00000087763 1 2 2 80 10 40563931 40565137 CATTGTCCAGAGGATCCCA 59 40565181 40565199 GCTGTGCCAAAGAACAGAG 60 NA Rattus norvegicus 81 LOC100911373 ENSRNOG00000015798 ENSRNOT00000084658,ENSRNOT00000021299 1 2 2 80 9 64552623 64554744 GATTCCTCGTTCTAGTATAATGCC 59 64552566 64552590 TTATGGTAAGTGTAAGGGTATCCAG 60 NA Rattus norvegicus 81 Olr1307 ENSRNOG00000048037 ENSRNOT00000060092 3 1 1 60 8 43304203 43304222 CACAGTGATGGCTTATGACC 59 43304162 43304183 AATTATTGAGTAGCGAAGTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lenep ENSRNOG00000049513 ENSRNOT00000074920 1 1 1 89 2 188727472 188727491 TGTATCAAGGAACTGCTGGA 59 188727315 188727420 GGAGTCTTAGGGCTGAGTG 59 NA InUTR Rattus norvegicus 81 Cfap44 ENSRNOG00000028077 ENSRNOT00000059680 1 1 1 80 11 61222065 61222697 GATGGCAGTGTTAGGATATGG 58 61222005 61222025 CTCTATCTCTAACAACCCGCT 59 NA Rattus norvegicus 81 Cfap44 ENSRNOG00000028077 ENSRNOT00000059680 2 1 1 80 11 61225741 61226875 CCACATCAAGTTCTGGGAG 58 61225679 61225697 GATGTCTTTCCAAATCGCC 57 NA Rattus norvegicus 81 Stard3nl ENSRNOG00000052429 ENSRNOT00000081314 1 1 1 93 17 47687952 47687970 TTCAGGATGCATCGGAGAG 59 47688025 47695300 TCTTCAGATCCTGCTTCAGAC 60 NA Rattus norvegicus 81 Cyp2j10 ENSRNOG00000042224 ENSRNOT00000012503,ENSRNOT00000058163 1 2 4 80 5 115217819 115221878 ATCCCTTCAGCAGTTTGTG 58 115217757 115217776 CCAGTTACAACCACTGAAGG 59 NA Rattus norvegicus 81 Acpp ENSRNOG00000011820 ENSRNOT00000085585,ENSRNOT00000016222 2 2 2 80 8 112854999 112857439 ATCATGTATTCTGCACACGA 57 112854938 112854956 GTAGGGAGGTAGAAGTCCA 57 NA Rattus norvegicus 81 Cml5 ENSRNOG00000015768 ENSRNOT00000021120 1 1 1 96 4 117531186 117531204 ACTTTGTCCCTGACACCAG 60 117507549 117531128 CACTTTCCTTAAGACCTTGGG 59 NA InUTR Rattus norvegicus 81 RGD1560207 ENSRNOG00000030048 ENSRNOT00000045901 1 1 1 80 X 46903095 46903116 CCACTTACAGTACACAATTTGG 58 46901521 46903055 CAACAATTTGAACTGTGGCT 58 NA Rattus norvegicus 81 Gpatch4 ENSRNOG00000018969 ENSRNOT00000056923 2 1 1 80 2 187420054 187422127 CAGAAGTTTGTGAAGACAGCC 60 187422169 187422187 GTCAACATCACTGCAGCTC 59 NA Rattus norvegicus 81 Slc38a2 ENSRNOG00000006305 ENSRNOT00000039002 3 1 1 80 7 138096372 138096390 ACATAAGGCATACGGTCTG 57 138096190 138096328 TAGCTTGACATAGCTCCGA 58 NA Rattus norvegicus 81 AABR07012426.1 ENSRNOG00000050263 ENSRNOT00000072634,ENSRNOT00000044412 1 2 2 83 2 195039581 195039619 GGGATTGAATTTCCTGCTCTC 59 195039663 195039682 CCTACTATGGACACCTTGCA 59 NA Rattus norvegicus 81 Stk31 ENSRNOG00000057554 ENSRNOT00000086307 1 1 1 80 4 79114491 79115474 CTGTTCTCTTAAAGGGCTATTCTG 59 79115511 79115531 AAGCTCTATGATAGGAGGCTG 59 NA Rattus norvegicus 81 Rtdr1 ENSRNOG00000001315 ENSRNOT00000085583,ENSRNOT00000041165 3 2 2 80 20 14579800 14579823 GATAACTTGGTTCGGATAAAGACC 60 14579860 14584826 CTTTAAGAAGCCAACTCTGCC 60 NA Rattus norvegicus 81 Atad2b ENSRNOG00000058973 ENSRNOT00000092223 1 1 3 87 6 29065173 29069743 ATGTGTTGGCTACTGTGGA 59 29069794 29069812 ATAGATCTGAGGGTAGCGC 59 NA Rattus norvegicus 81 Spg20 ENSRNOG00000014155 ENSRNOT00000057978 2 1 1 80 2 144536239 144538599 ACAACATTCTGTCAGGTGC 58 144538641 144538661 CTTTCTGAATTGCTTTGCCAG 59 NA Rattus norvegicus 81 LOC100910274 ENSRNOG00000048155 ENSRNOT00000050785 3 1 1 60 3 79187129 79187149 CTTTGTGCTATTTCTGCTCCT 59 79187170 79187189 GACCACCATGAGAAGATTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uxs1 ENSRNOG00000045605 ENSRNOT00000082837,ENSRNOT00000070920 1 2 2 80 9 11180002 11180020 ACATGAATGATGGGAGGGT 58 11174730 11179961 ACCCAGATCCATATACTGTGAG 59 NA Rattus norvegicus 81 Lrp2 ENSRNOG00000056184 ENSRNOT00000082624 1 1 1 80 3 55754131 55754149 CCCGACGACAGATAATCAG 58 55751259 55754089 CACTCAGGAACATATACCCAG 58 NA Rattus norvegicus 81 LOC100910792 ENSRNOG00000012490 ENSRNOT00000017102,ENSRNOT00000084702 2 2 2 80 17 48349406 48358082 CCTTCCCAGAATGAAGTCCT 59 48349345 48349365 CACATCAGGTTTGAAAGGGTC 60 NA Rattus norvegicus 81 Gmds ENSRNOG00000017605 ENSRNOT00000023691 3 1 1 80 17 33843970 33843989 TAGGCAGATGTAAGGAGACC 58 33844030 33937476 GTAGAAAGTCCACTTCAGTCG 59 NA Rattus norvegicus 81 Arhgef9 ENSRNOG00000007733 ENSRNOT00000076190 2 1 5 60 X 64248968 64248987 TCATCCTGTTTCTCCATCCA 59 64248927 64248945 AGTGCCTTCACAAATTGCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Emid1 ENSRNOG00000033575 ENSRNOT00000057361 1 1 1 85 14 85393155 85393173 GTCATGTGCAGAATGGCAC 60 85392727 85393106 GGTTCTGTAGCTGTTCCCA 59 NA Rattus norvegicus 81 Sgca ENSRNOG00000003998 ENSRNOT00000005381 1 1 1 80 10 82780241 82780259 CCTATAACCCTGGCTTCCT 58 82780007 82780197 GATTGTAGGCTGTGACCTC 58 NA Rattus norvegicus 81 Trim10 ENSRNOG00000000782 ENSRNOT00000001016 2 1 1 81 20 2189450 2190863 CCCTACAGGGAACAAATACAG 58 2189389 2189410 TTTCTCTTGATTGGGTTTCCTG 59 NA Rattus norvegicus 81 Nlrc4 ENSRNOG00000005810 ENSRNOT00000007655 2 1 1 86 6 22184310 22186911 CTCTACAGGGACTGATCGG 59 22186961 22186979 GACTGATGTACGCATCCCA 60 NA Rattus norvegicus 81 LOC691519 ENSRNOG00000036743 ENSRNOT00000030732 1 1 1 101 1 190466242 190478002 CAAATAAGGATGGCTTCACAC 58 190478064 190478083 CAGCTGCATGTATACTAGCA 58 NA Rattus norvegicus 81 Esd ENSRNOG00000009512 ENSRNOT00000013324,ENSRNOT00000078013 3 2 2 80 15 56764460 56764480 TTTGCTATCTACCTACCACCC 59 56764519 56767192 TTCTGTGCAAGTTAAACCAGAC 60 NA Rattus norvegicus 81 Coq3 ENSRNOG00000009974 ENSRNOT00000013384 1 1 1 80 5 36054603 36056327 ATCTTGGAACCAAATGGTCTG 59 36056369 36056387 AGTCCAATGCCAGTAACCT 59 NA Rattus norvegicus 81 Znfx1 ENSRNOG00000008194 ENSRNOT00000076833,ENSRNOT00000055127 1 2 2 80 3 163802794 163804445 TCTAGAAGGCATCTACGGG 58 163802732 163802750 AACTGCTTCAGGATCTCAC 57 NA Rattus norvegicus 81 Fat2 ENSRNOG00000012575 ENSRNOT00000058665 1 1 1 80 10 40611429 40613707 TGCTATATCACAGAGGGAGAC 59 40611369 40611389 CTTCCTTGAGGAGATTCTCCA 59 NA Rattus norvegicus 81 Slc16a2 ENSRNOG00000002832 ENSRNOT00000040637 2 1 1 81 X 74585290 74585308 CTTGGACGTCTCGTCTCAG 60 74580698 74585245 GCAGGAATGAGAGGACCTG 60 NA Rattus norvegicus 81 AABR07044581.1 ENSRNOG00000030677 ENSRNOT00000046763 3 1 1 81 20 11498050 11498070 GATGGCTTCAGGATTTCTGTC 59 11497972 11498009 CATTGATGAAGAGGTCCATGG 59 NA Rattus norvegicus 81 Lemd2 ENSRNOG00000025864 ENSRNOT00000035819 2 1 1 80 20 6550706 6551491 CCAGGAGTACATAGCTAACG 57 6550645 6550663 TTGTTGCTGCTCAGTATCC 58 NA Rattus norvegicus 81 Ints3 ENSRNOG00000015153 ENSRNOT00000020575 2 1 1 80 2 189771025 189771938 TTCCATCTACACAGAGTTTCCA 59 189770966 189770985 GCAGAGTCAATAACAGCCAC 59 NA Rattus norvegicus 81 Zfp709 ENSRNOG00000016186 ENSRNOT00000021742,ENSRNOT00000087597 1 2 2 60 16 19636635 19637533 AGAAATGGAGTTGTGGAAAGAC 59 19636596 19636616 AGATTGCTTTACACTCACAGC 59 NA DesignNoJunction Rattus norvegicus 81 Spice1 ENSRNOG00000039024 ENSRNOT00000086286,ENSRNOT00000064385 1 2 2 80 11 61279412 61279431 CGCTGGAATAAATCAAGACC 57 61278300 61279372 TCTACTTCATTAAGAGCCTGAG 57 NA Rattus norvegicus 81 Spice1 ENSRNOG00000039024 ENSRNOT00000086286,ENSRNOT00000064385 3 2 2 80 11 61279409 61279430 GCTGGAATAAATCAAGACCCTG 60 61278299 61279372 GTCTACTTCATTAAGAGCCTGAG 59 NA Rattus norvegicus 81 Rnf185 ENSRNOG00000019325 ENSRNOT00000026134 2 1 1 81 14 83663867 83663887 CGAATGCAACATATGTCTGGA 59 83660748 83663824 ATGTAAACACGGCCAACAG 59 NA Rattus norvegicus 81 Ascl1 ENSRNOG00000004294 ENSRNOT00000005674 3 1 1 158 7 28038836 28039194 GACTTTGGAAGCAGGATGG 59 28038696 28038715 TGAATCTAAGTCCTGGTGCC 60 NA InUTR Rattus norvegicus 81 AABR07029742.2 ENSRNOG00000046598 ENSRNOT00000072548 3 1 1 61 10 48995545 48995565 GACAAACCCGATATGGTTGAG 59 48995585 48995606 GTTTCTGTCTTCTTCAACTTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apeg3 ENSRNOG00000048353 ENSRNOT00000075745 3 1 1 60 1 70234758 70234777 ACTATCAAACGCACGATGAG 59 70234717 70234738 TTGAGGTGTTCTTTAAGGTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Haus8 ENSRNOG00000052038 ENSRNOT00000090775,ENSRNOT00000078714 1 2 2 83 16 19663400 19667055 AGTACAAGGAGGAAGAGTGG 59 19661145 19661163 TCTCCTTTGGCTGCTACAG 59 NA Rattus norvegicus 81 LOC679766 ENSRNOG00000033640 ENSRNOT00000049313 2 1 1 60 14 74095098 74095118 CAGTTGTGAACCCAGAAACTC 60 74095058 74095078 GAGTCCTCTTCATCTTCCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr567 ENSRNOG00000060426 ENSRNOT00000083330 2 1 1 93 3 75576157 75576519 TCGATATCGTAAATTGCTCCTC 58 75576085 75576103 AGGAACGTGGTAAAGAGGG 59 NA Rattus norvegicus 81 Tmem184c ENSRNOG00000012860 ENSRNOT00000017226 1 1 1 80 19 34049487 34054083 ATTTGTCACAACTGTTTGCC 58 34054126 34054144 CAGGTTGTATAGGGCTGAG 57 NA Rattus norvegicus 81 Tmem184c ENSRNOG00000012860 ENSRNOT00000017226 2 1 1 80 19 34049488 34054084 TTTGTCACAACTGTTTGCCA 59 34054126 34054145 ACAGGTTGTATAGGGCTGAG 59 NA Rattus norvegicus 81 Padi3 ENSRNOG00000006950 ENSRNOT00000009230 1 1 1 80 5 159312730 159313581 TTGCACAGAGCTGTATTGAC 59 159312669 159312687 GGATGTCAATGATGTCGCT 58 NA Rattus norvegicus 81 Tmtc1 ENSRNOG00000001854 ENSRNOT00000064320 2 1 1 80 4 182648978 182649000 GGAATCCATTAAGTATGGTCCAG 59 182636371 182648940 TTAAATCTTTCCTGCTCAGCC 59 NA Rattus norvegicus 81 Sfxn3 ENSRNOG00000015442 ENSRNOT00000021171 2 1 1 80 1 264799885 264800058 CTCTCACCAAGCACCTACC 60 264800102 264800120 GGATGTTGATGCAGTTGGC 60 NA Rattus norvegicus 81 AC117091.1 ENSRNOG00000032352 ENSRNOT00000041415 2 1 1 121 13 92197696 92197715 TAATGTTTGCTGTCCTTGCC 59 92197800 92197818 TCAGTGACCAGAGATGGTG 59 NA DesignNoJunction Rattus norvegicus 81 Hgd ENSRNOG00000002701 ENSRNOT00000003645 1 1 1 80 11 66027050 66027071 CATTTCTGGATTTGGGAATGAG 58 66026123 66027012 TGAGGATTATTCTGTCCTTTCG 58 NA Rattus norvegicus 81 Wdfy2 ENSRNOG00000010042 ENSRNOT00000066864,ENSRNOT00000080537 3 2 2 80 15 46116198 46116218 GATCACTCTGTCATCATGTGG 59 46116258 46121904 CTGGACTTTGTCATTGTGTCC 60 NA Rattus norvegicus 81 Cdh7 ENSRNOG00000032490 ENSRNOT00000041413 1 1 1 80 13 31203811 31203832 CTACTGCCAAATCATTGGATCG 60 31203873 31204709 GGGATGGATTCTGGCTCTC 60 NA Rattus norvegicus 81 Tnpo2 ENSRNOG00000003970 ENSRNOT00000005571 2 1 1 80 19 26155044 26155141 CAAATCAGAAGATGAACCAACC 58 26155182 26155200 GGGAAGCTCTGGTAATGTG 58 NA Rattus norvegicus 81 Elmo1 ENSRNOG00000059705 ENSRNOT00000077910,ENSRNOT00000090663 3 2 2 80 17 46575242 46615688 ATGCATACATCCGGATTGTG 59 46575181 46575199 GTTCTATACTGCTGCGTCC 58 NA Rattus norvegicus 81 Ptbp3 ENSRNOG00000016334 ENSRNOT00000022107,ENSRNOT00000089251 1 2 2 80 5 76678461 76679556 CCAGATAGCAATGAACCACC 59 76678400 76678419 ACAGCTTGATGTTTGGACAG 59 NA Rattus norvegicus 81 Sowahb ENSRNOG00000002202 ENSRNOT00000002995 3 1 1 60 14 16492604 16492622 TGACGAGTCCTCAGAATCC 59 16492645 16492664 ACGAATGCTTCGAAAGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tomm70a ENSRNOG00000001640 ENSRNOT00000002238 2 1 1 80 11 45488094 45489931 AGCTAACGTGAAGCTTCGA 60 45488032 45488050 GTAGACAGCATAGGCTGCT 59 NA Rattus norvegicus 81 Zbtb6 ENSRNOG00000009340 ENSRNOT00000012364 1 1 1 83 3 21683057 21684072 TTTGCGAGTCGATTGTCAC 59 21682992 21683011 TCTGTAGGACCACATCTCCT 59 NA InUTR Rattus norvegicus 81 Olr361 ENSRNOG00000053372 ENSRNOT00000088190 1 1 1 60 1 230160404 230160422 ATTCTGCTGGGACTCACTG 59 230160444 230160464 GGAGAAAGATGATGAAGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ushbp1 ENSRNOG00000023485 ENSRNOT00000040393 2 1 1 80 16 19786272 19786611 CTCTACAATATAGCAAGGACTGTG 59 19786215 19786233 CAACTCCAGCTCCTAGACC 59 NA Rattus norvegicus 81 Cdc37l1 ENSRNOG00000010967 ENSRNOT00000082290,ENSRNOT00000016000 1 2 2 80 1 247110379 247110398 AGAGTGACTTAGACGTGTCC 59 247110441 247114813 TCCCGTGGCTATACATCTG 59 NA Rattus norvegicus 81 Cdc37l1 ENSRNOG00000010967 ENSRNOT00000082290,ENSRNOT00000016000 2 2 2 80 1 247110380 247110399 GAGTGACTTAGACGTGTCCC 60 247110441 247114814 ATCCCGTGGCTATACATCTG 59 NA Rattus norvegicus 81 Armcx3 ENSRNOG00000025730 ENSRNOT00000029664 3 1 2 82 X 105575453 105575471 AGAAAGATTGCTGGGTGTG 58 105575516 105575826 GGTTTCAGAGGTAAACCTCC 58 NA InUTR Rattus norvegicus 81 Top2b ENSRNOG00000048795 ENSRNOT00000076617,ENSRNOT00000075125 2 2 5 80 15 10296381 10296399 GGCATACGATTTAGCTGGT 58 10293156 10296338 CTGCGAAATCCATTTACAGG 57 NA Rattus norvegicus 81 Cdk14 ENSRNOG00000007151 ENSRNOT00000009417 3 1 1 80 4 26277531 26304352 TTTAAGCCAGAACGATTTACCG 59 26336095 26336115 GGCGTGATTTACATAGCTGAG 59 NA Rattus norvegicus 81 LOC690271 ENSRNOG00000003080 ENSRNOT00000004114 3 1 1 80 13 99981456 99982197 GAGTCGCTTCAGTCATTTACC 59 99981396 99981417 AGGACTTCCTCAAATTTCATCC 59 NA Rattus norvegicus 81 Myo3b ENSRNOG00000030022 ENSRNOT00000037188 1 1 1 80 3 56368108 56368126 TCAACTTACAAGCACACGG 58 56368170 56387421 TCACAAGCAATGACCTCTG 58 NA Rattus norvegicus 81 Tecr ENSRNOG00000021808 ENSRNOT00000037608 2 1 1 87 19 24706508 24706526 AACTGCACCTACTACTGGG 59 24706351 24706458 GCTGAACTCCATAGGTAGGG 59 NA Rattus norvegicus 81 Hecw1 ENSRNOG00000016046 ENSRNOT00000082040,ENSRNOT00000021703 3 2 2 80 17 53502713 53502732 ATGTTTGCAGATACTCGGCT 60 53502772 53528594 GTCCACAAAGAAAGACTTTCCC 60 NA Rattus norvegicus 81 Pcdh11x ENSRNOG00000030330 ENSRNOT00000045001 2 1 1 135 X 92596676 92655603 AAACAGTAGTATATCGTGGGCT 59 92655699 92655717 TAATTCTTCTCCTGGGCGC 60 NA InUTR Rattus norvegicus 81 LOC102546354 ENSRNOG00000030932 ENSRNOT00000083788 1 1 2 101 1 88361689 88361707 TTGCTTGTCTGAAACCCAG 58 88353113 88361624 CTGGACTCCAGATCTGAGC 59 NA InUTR Rattus norvegicus 81 Azgp1 ENSRNOG00000001333 ENSRNOT00000001801 1 1 1 80 12 19200222 19202018 CTGGACCGAACAGATCCTC 60 19202059 19202080 GGCCAGACATCTGAATATTCTG 59 NA Rattus norvegicus 81 Olr765 ENSRNOG00000046942 ENSRNOT00000040298 3 1 1 60 3 102723945 102723963 AGGGTACTCAAACTTGCCT 59 102723984 102724005 TGTTGGCAATAACCATGATGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnk15 ENSRNOG00000010816 ENSRNOT00000014411 2 1 1 85 3 160232242 160232260 TTTCTACTTCGCCATCACG 58 160236143 160236161 ACATGCAGAACACTTTGCC 59 NA DesignNoJunction Rattus norvegicus 81 Chac1 ENSRNOG00000014387 ENSRNOT00000019392 2 1 1 80 3 111161536 111162316 GAAGATCATGAGGGCTGCA 60 111162359 111162378 GTTCAGGTACTTCAGTGCCT 60 NA Rattus norvegicus 81 Clvs1 ENSRNOG00000006919 ENSRNOT00000009744,ENSRNOT00000087182 2 2 2 80 5 22393167 22469217 AATTGGGATCAGAGTAGGAACTC 60 22469254 22469275 AGGATCTTCGATAAGGACTTCC 59 NA Rattus norvegicus 81 Satl1 ENSRNOG00000022476 ENSRNOT00000037149 1 1 1 80 X 83773613 83774501 TCACTGAAGATTATCAAGGTCTAGG 60 83772805 83772824 TACATCCGGTGTTTATGGCT 59 NA Rattus norvegicus 81 Nfya ENSRNOG00000012702 ENSRNOT00000017157,ENSRNOT00000091532 2 2 2 80 9 14569388 14569407 TTAAGAGGAGACAAGCGAGG 59 14569447 14569938 GAGACTCATGGAGGTATTTCCT 59 NA Rattus norvegicus 81 Nufip1 ENSRNOG00000001033 ENSRNOT00000001366 1 1 1 80 15 58187320 58187339 ATTTGAAGCCTGAAATTCCG 57 58187381 58194217 CCTTATCAGACTCAGAGTCG 57 NA Rattus norvegicus 81 Fem1c ENSRNOG00000003578 ENSRNOT00000004784 2 1 1 80 18 40517206 40517226 AAGGACACAAAGAGATTGCTC 59 40498873 40517166 GTGCAGTATTGCCTTTAACAC 58 NA Rattus norvegicus 81 RGD1561151 ENSRNOG00000034183 ENSRNOT00000042552 3 1 1 95 X 96667876 96668815 AAAGTGAAGACACAAGCAGG 59 96668873 96668891 AACAAGGCCTCTTAAGCAG 58 NA Rattus norvegicus 81 Cd244 ENSRNOG00000004698 ENSRNOT00000006266,ENSRNOT00000000053 2 2 2 88 13 89975511 89983958 CATCAGGGCCAAGATTGTG 59 89984009 89984028 GTTTGTATGTTGGAAGGCCG 60 NA Rattus norvegicus 81 Gng13 ENSRNOG00000039350 ENSRNOT00000030273 2 1 1 89 10 15090461 15090480 ATGAAGAAGGAGGTGGAGAG 59 15090532 15090674 AATCCACTTGAGGAGCTCG 60 NA Rattus norvegicus 81 Fxyd4 ENSRNOG00000014578 ENSRNOT00000019649 2 1 1 80 4 149986619 149986637 TGGAGGGAATAACCTGTGC 59 149985626 149985767 TGCCTTTATCAACTGGACCA 59 NA Rattus norvegicus 81 Cysrt1 ENSRNOG00000010600 ENSRNOT00000014080 1 1 1 62 3 2459305 2459323 AAGAAGACAGACTGCTGCT 59 2458931 2458949 TTGACAACCATCTCATGGG 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Adam15 ENSRNOG00000020590 ENSRNOT00000027970,ENSRNOT00000050868 3 2 2 80 2 188667415 188667553 AGCTTGTGACTGTTACTTCCT 59 188667355 188667374 CCGAGAAGTCAGGAGAACAG 60 NA Rattus norvegicus 81 Icoslg ENSRNOG00000023109 ENSRNOT00000038547 3 1 1 80 20 11335667 11335687 ATGTGGATGTTATCTGCTGTG 59 11334154 11335625 CAGTGAAACTATCTGCCCG 58 NA Rattus norvegicus 81 Olr1163 ENSRNOG00000030569 ENSRNOT00000045215 3 1 1 60 8 20172684 20172702 ATGAACCCTCGAATCTGTG 57 20172642 20172662 AGACCCAGAACATAATGATCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfsf14 ENSRNOG00000047730 ENSRNOT00000074247 2 1 1 80 9 9762689 9763018 GCTGATACAAGATCAACGATCTC 60 9764768 9764786 CCAATGCCTATCAAGCTGG 59 NA Rattus norvegicus 81 Shmt2 ENSRNOG00000008106 ENSRNOT00000011082 3 1 1 81 7 70828341 70828360 CTGAGATATGGGAGCTTCTG 57 70827783 70828297 CTGCAGAAGTTCTCTGAGG 58 NA Rattus norvegicus 81 Ccdc167 ENSRNOG00000000531 ENSRNOT00000000639 3 1 1 80 20 8370008 8370764 GCCTCGAAATATGAGAAGGAG 58 8369948 8369966 TATGAAGATGGCCACCGAG 59 NA Rattus norvegicus 81 Zfp9 ENSRNOG00000006726 ENSRNOT00000065579,ENSRNOT00000079053,ENSRNOT00000009095 2 3 3 132 4 150519571 150520280 TAGGAGCTGTGGTGATAAGC 59 150518941 150518959 GTCATAGCTTTCATGCCGG 59 NA Rattus norvegicus 81 Ndfip1 ENSRNOG00000013562 ENSRNOT00000018499 2 1 1 91 18 31605825 31605845 ATAATGTGGCTACAACACTGC 59 31605895 31609909 ATCTTCATCTCTTCCAGGAACC 60 NA Rattus norvegicus 81 Rn60_5_0815.7 ENSRNOG00000051118 ENSRNOT00000076023 2 1 1 80 5 77489989 77490354 GCTCTACGGTAGAACAAAGG 58 77489928 77489946 CTAGTGATTACATGCGCCT 57 NA Rattus norvegicus 81 Pla2g12a ENSRNOG00000057470 ENSRNOT00000080183 2 1 2 105 2 235312002 235321203 AGTACAAGTGTAGCGACGG 60 235321272 235326995 CTCGCATGCTGATGAACAC 60 NA Rattus norvegicus 81 Serp2 ENSRNOG00000038228 ENSRNOT00000058204 2 1 1 80 15 58694626 58705101 TGTGGCTCAGACTTAAATCC 58 58694565 58694583 AGAATGTTCTGGCAGTCTC 57 NA Rattus norvegicus 81 Olr244 ENSRNOG00000045879 ENSRNOT00000055175 2 1 1 60 1 172214929 172214948 TTATGTGATGCCCAAGTCCA 59 172214888 172214906 GTAGAACACAGACACCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufs3 ENSRNOG00000009155 ENSRNOT00000012425 2 1 1 80 3 79724079 79724098 GACAGATTATGGCTTCGAGG 58 79721918 79724037 TCATCGTCATAACGTAGCTC 57 NA Rattus norvegicus 81 LOC100911406 ENSRNOG00000005628 ENSRNOT00000007807 3 1 2 85 4 82126451 82126470 TTCAGAGACGTCTTCTCCAG 59 82125899 82126405 CATACTCTCCAACTTTCCCTG 58 NA Rattus norvegicus 81 R3hcc1 ENSRNOG00000016777 ENSRNOT00000022706 3 1 1 80 15 51375361 51375380 TCTCTTGAGCAGCTTCTCTG 60 51374557 51375320 GAATTGGGTAACCTGATGTCC 59 NA Rattus norvegicus 81 LOC100911002 ENSRNOG00000050177 ENSRNOT00000071895 3 1 1 80 1 146985435 146985455 TAAATGCCTCTTTCAGAAGCC 59 146985496 146986241 ACTTAAGCTCCTCCCTTGAG 59 NA Rattus norvegicus 81 Papss1 ENSRNOG00000011311 ENSRNOT00000015077,ENSRNOT00000085301,ENSRNOT00000081248 3 3 3 80 2 236649901 236651304 CCCTACATCAAGATGATTCTGGA 60 236651343 236651362 GTTCCAGTAAATCCGGTCCA 60 NA Rattus norvegicus 81 LOC688963 ENSRNOG00000002721 ENSRNOT00000003674 1 1 1 60 11 65960425 65960446 GTATCTGCTTCAGTACAACGAC 59 65960467 65965177 AATCAAGGCAGGATCCTCG 60 NA DesignNoJunction Rattus norvegicus 81 Tead3 ENSRNOG00000000506 ENSRNOT00000000607 2 1 1 80 20 7915076 7916628 AAGGCTATGAACCTGGACC 59 7915014 7915032 AGAGACGATTTGGGCAGAC 60 NA Rattus norvegicus 81 Slc27a1 ENSRNOG00000018170 ENSRNOT00000024659 1 1 1 80 16 20014408 20014428 GAAGGTTCTTGCATCCTATGC 60 20014470 20014980 TGGATCTTGAAGGTGCCTG 60 NA Rattus norvegicus 81 Slc27a1 ENSRNOG00000018170 ENSRNOT00000024659 3 1 1 86 16 20013692 20013710 TATGTTAGTGACAGCGCCA 59 20013760 20013848 TAGCACGTCACCTGAAAGG 60 NA Rattus norvegicus 81 Mas1 ENSRNOG00000014971 ENSRNOT00000020100 3 1 1 82 1 48094632 48103154 GTTGGTTCCAGGAGATGCT 60 48103196 48103218 GGTATCATCAGTCAGTAACATGG 59 NA InUTR Rattus norvegicus 81 Pklr ENSRNOG00000020420 ENSRNOT00000027700,ENSRNOT00000065791 1 2 2 80 2 188452443 188452462 AAGGAGATGATCAAAGCAGG 58 188452503 188452664 GATGGATTCTGCATGGTACTC 59 NA Rattus norvegicus 81 Sema6a ENSRNOG00000004033 ENSRNOT00000005476,ENSRNOT00000005446 3 2 2 80 18 41373355 41373375 GGCAGTTACAGATGTGATTCG 60 41371103 41373315 CCAGGGATGCTGTTATAAGGT 60 NA Rattus norvegicus 81 Il10 ENSRNOG00000004647 ENSRNOT00000006246 3 1 1 87 13 47740985 47741003 ATGGCCCAGAAATCAAGGA 59 47741054 47742069 AGAAATCGATGACAGCGTC 58 NA Rattus norvegicus 81 Kif23 ENSRNOG00000014080 ENSRNOT00000091755,ENSRNOT00000037028 3 2 2 80 8 66890608 66890627 TCAATAGTACAACCGTGCAG 58 66886523 66890568 AGTACTGAGTCTCCTTGTAGTC 59 NA Rattus norvegicus 81 Ugt2b35 ENSRNOG00000001980 ENSRNOT00000002712,ENSRNOT00000092201 1 2 2 80 14 22556093 22556113 CCAATATCGCCAAATGTTGAC 58 22556152 22557557 GAAGTCTTCAATATCCTTGGGC 59 NA Rattus norvegicus 81 AABR07028027.1 ENSRNOG00000021292 ENSRNOT00000033844 2 1 1 80 17 53396976 53396998 CTAAACCAGACCCTTCTGGAG 60 53397039 53397058 TCCAAGAAAGCCCATAACCT 59 NA Rattus norvegicus 81 Rab11a ENSRNOG00000011302 ENSRNOT00000015598 1 1 1 80 8 70204455 70204474 GCTTGTGGGCAATAAGAGTG 60 70203393 70204414 CCATTCTTCTCTGCAAATGCT 59 NA Rattus norvegicus 81 Nr2f6 ENSRNOG00000016892 ENSRNOT00000022898 1 1 1 69 16 19776952 19776970 AGAGTTTCTTCAAGCGCAG 59 19774404 19774422 ATCTGACAGTCACGGTTGG 60 NA DesignNoJunction Rattus norvegicus 81 RGD1305537 ENSRNOG00000045696 ENSRNOT00000073995 3 1 1 90 10 1470208 1470232 CATTCCTCCTATAAACGGAGTG 59 1470284 1470302 TTGGGTGTTTGTCTCTGGA 59 NA Rattus norvegicus 81 Fdxr ENSRNOG00000058497 ENSRNOT00000085636 2 1 1 84 10 103822206 103822227 AGACATCTATGAGAAGCAGCTC 60 103821951 103822167 GATGACATTCTTTACTTCAGGATGG 60 NA Rattus norvegicus 81 Gtpbp6 ENSRNOG00000048168 ENSRNOT00000063905 2 1 1 126 12 52638249 52638613 CCTGACAGAGAAGATCAGGG 59 52638787 52638805 GGTGAATCTGTCGAACACG 59 NA Rattus norvegicus 81 LOC100361016 ENSRNOG00000021972 ENSRNOT00000046416 2 1 1 89 X 93065315 93065459 AAACCTATGGCACTGTCAG 58 93065244 93065262 AGAGTACTGAGTGCGTTCC 59 NA DesignNoJunction Rattus norvegicus 81 Parva ENSRNOG00000015713 ENSRNOT00000021671 1 1 1 80 1 177393304 177393809 CAATGTGGTGAAGAAGACCC 59 177393852 177393870 GTCTCCAGTTCTGTGACCT 59 NA Rattus norvegicus 81 Olr198 ENSRNOG00000049227 ENSRNOT00000041317 2 1 1 60 1 170109437 170109460 CCTTATCTTGATCACCATCTACTG 59 170109477 170109497 AAGAAACTGGTACATTGGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kpna1 ENSRNOG00000051711 ENSRNOT00000078285,ENSRNOT00000084540 2 2 2 80 11 67659942 67662001 ACAGATCCAGACTGTGATAGAC 59 67659883 67659901 TTTCTCGTCCGGAACTCTG 60 NA Rattus norvegicus 81 Rn60_14_0474.1 ENSRNOG00000033251 ENSRNOT00000050454 3 1 3 82 14 47203107 47203268 CCATGGGAAATGCACTTAGTC 59 47203045 47203063 GCTTTCTGGTCACTTTCCC 59 NA DesignNoJunction Rattus norvegicus 81 Cyp3a18 ENSRNOG00000000969 ENSRNOT00000001285 2 1 1 80 12 10680535 10683767 CTTGTGAGAAGACACAGATCC 59 10683808 10683827 CAAGCTTTAGGATGATGGGT 58 NA Rattus norvegicus 81 Ostc ENSRNOG00000023322 ENSRNOT00000037393 3 1 1 80 2 235823820 235826593 TTCTTGGCTTACAGAGTAAACG 59 235823761 235823779 ACCTAAGCCTCCCATTGTG 59 NA Rattus norvegicus 81 Olr1319 ENSRNOG00000053365 ENSRNOT00000083262 2 1 1 60 8 43607368 43607387 TGAGAGCAGATTCAAAGCCT 60 43607410 43607428 GAAGACAGCCACAGAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajc5g ENSRNOG00000026578 ENSRNOT00000031244 1 1 1 80 6 26628267 26628864 AAAGCCTACAGGAAACTGG 57 26628205 26628224 GTCTTTGAAGAATTCTGCCG 58 NA Rattus norvegicus 81 Vom2r3 ENSRNOG00000046319 ENSRNOT00000044187,ENSRNOT00000072186 1 2 2 100 1 400975 400993 CCACACCTATCACGAACTC 58 401057 401927 TAAGCAAAGAAGCCACCTG 58 NA Rattus norvegicus 81 Vom2r3 ENSRNOG00000046319 ENSRNOT00000044187,ENSRNOT00000072186 2 2 2 120 1 400955 400973 AATGCTGTGTATGCTGTGG 59 401057 401927 TAAGCAAAGAAGCCACCTG 58 NA Rattus norvegicus 81 Fam161a ENSRNOG00000009881 ENSRNOT00000013097,ENSRNOT00000087091 1 2 2 80 14 107792110 107794195 GATGATTCTTCTAGTTCTGCATCG 60 107794234 107794252 TAGGTCAGGCTCTGAAAGC 59 NA Rattus norvegicus 81 Smarcc2 ENSRNOG00000031135 ENSRNOT00000028244 2 1 1 80 7 2881706 2881726 AACCATTTCTGAGGACAAGAG 58 2881768 2882007 CGTACCCATTCCTCTTCCT 59 NA Rattus norvegicus 81 Babam1 ENSRNOG00000017071 ENSRNOT00000022938 2 1 1 80 16 19795051 19796407 CTGCTCCACATTCAATTTGG 58 19796952 19796971 GTTTGCACATTCTCTGTGAC 58 NA Rattus norvegicus 81 Babam1 ENSRNOG00000017071 ENSRNOT00000022938 3 1 1 80 16 19795052 19796408 TGCTCCACATTCAATTTGGA 58 19796954 19796972 GGTTTGCACATTCTCTGTG 57 NA Rattus norvegicus 81 Lipm ENSRNOG00000019301 ENSRNOT00000026219 3 1 1 80 1 252415472 252418226 AATTGAAGAAGGAAGGATCCAG 58 252418267 252418285 GGTTGGAAATCCAGTTGCT 58 NA Rattus norvegicus 81 LOC257643 ENSRNOG00000004858 ENSRNOT00000006555 2 1 1 67 3 143112415 143112433 ATTGCCCATTGCTACAAGG 59 143115909 143115927 AGGTCGTGCATCTACTTGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100125384 ENSRNOG00000045720 ENSRNOT00000074027 2 1 1 60 1 106405980 106405999 CACAGAAATATTGCCAACCC 58 106406021 106406040 GGTAGTCCAGCATGATACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aqp5 ENSRNOG00000051970 ENSRNOT00000084911 3 1 1 120 7 141249404 141249422 CTCCGAGCTGTCTTCTACG 60 141249506 141250557 TGTTGTTCAGCGCATTGAC 60 NA Rattus norvegicus 81 Anapc15 ENSRNOG00000019936 ENSRNOT00000027028 1 1 1 80 1 166983184 166983326 GGACTCAAACTCAGCTTAGG 58 166983366 166983387 ATTAAACCACAGTGTCTCAGTC 58 NA Rattus norvegicus 81 Anapc15 ENSRNOG00000019936 ENSRNOT00000027028 3 1 1 80 1 166983188 166983330 TCAAACTCAGCTTAGGAGCC 60 166983370 166983391 CCAGATTAAACCACAGTGTCTC 59 NA Rattus norvegicus 81 Olr1462 ENSRNOG00000022244 ENSRNOT00000035285 2 1 1 60 10 45922994 45923012 AGCAGGGCAAGTTTATCTC 58 45922952 45922970 ATGAAAGGGTTAAGGGTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kctd19 ENSRNOG00000016760 ENSRNOT00000022497 3 1 1 80 19 37342603 37343141 CAGAGATGCAAAGGAAACCAC 60 37342543 37342561 TTAGCCTTGTTCCAGGGAG 59 NA Rattus norvegicus 81 AABR07029675.1 ENSRNOG00000030600 ENSRNOT00000048241 3 1 1 85 10 44632775 44632795 CATACAGTCCTGAGTGGCC 60 44632843 44632862 AATACAACAACCAACACCCG 59 NA Rattus norvegicus 81 Tmem98 ENSRNOG00000021316 ENSRNOT00000037072 2 1 1 80 10 68176434 68176455 CCATTCTGGAGAATGAAGACTG 59 68177695 68179520 TGTGACAAATCTTCAAGATGGC 60 NA Rattus norvegicus 81 Htr5b ENSRNOG00000002549 ENSRNOT00000003441 1 1 1 104 13 37491661 37491680 GAAGATATACAAAGCCGCCA 58 37480871 37480889 GTCTCAGACTCCTGAGGTG 59 NA DesignNoJunction Rattus norvegicus 81 Htr5b ENSRNOG00000002549 ENSRNOT00000003441 3 1 1 106 13 37491663 37491682 TGGAAGATATACAAAGCCGC 58 37480871 37480889 GTCTCAGACTCCTGAGGTG 59 NA DesignNoJunction Rattus norvegicus 81 Nufip2 ENSRNOG00000024964 ENSRNOT00000030501 1 1 1 185 10 65199981 65199999 TTTCTACAACCACAGCCAC 58 65195156 65199835 CCATTTATTTCACCATAGCCTG 58 NA Rattus norvegicus 81 Grin2d ENSRNOG00000021063 ENSRNOT00000028615,ENSRNOT00000084869 2 2 2 81 1 101844000 101844018 CTCTACCTGGTTACCAACG 57 101843371 101843955 GCTGATAGAACACCTCACC 58 NA Rattus norvegicus 81 Tbr1 ENSRNOG00000005049 ENSRNOT00000065340 3 1 1 80 3 47679825 47680434 CAACAATGGGCAGATGGTG 60 47680478 47680496 CCGTCCTCATTCACTTCCA 59 NA Rattus norvegicus 81 Vom1r92 ENSRNOG00000057461 ENSRNOT00000087069 1 1 1 60 4 121761546 121761566 AAGGATGAAGTTCAAGGATGG 58 121761585 121761606 GCTATGGGACACAATAATTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sox18 ENSRNOG00000016248 ENSRNOT00000021790 3 1 1 142 3 177178615 177178633 AATCCGGATCTCCACAACG 60 177178307 177178327 TACTTGTAGTTGGGATGGTCG 60 NA DesignNoJunction Rattus norvegicus 81 Glt6d1 ENSRNOG00000027900 ENSRNOT00000034538 1 1 1 80 3 3260583 3264028 AGATCCACTTGAGGAACCA 58 3257018 3257037 TGATAACATCCAAGCGTCTC 58 NA Rattus norvegicus 81 Anks1b ENSRNOG00000024870 ENSRNOT00000059269 1 1 1 80 7 30714793 30727487 GAGCTGTCAAACAGAGAAGG 59 30727530 30727548 TCTAACAGAACTCGCACCA 59 NA Rattus norvegicus 81 Pde2a ENSRNOG00000019560 ENSRNOT00000026586,ENSRNOT00000090959 3 2 2 80 1 166624273 166624446 CAAGGAGACTTGGAGAAGG 57 166624489 166624508 CTGAAGTTCAGGGATGTAGG 57 NA Rattus norvegicus 81 Nt5c1b ENSRNOG00000004296 ENSRNOT00000090438,ENSRNOT00000005731 2 2 2 80 6 36092353 36093530 GGAATACTGTTGTCAAGCAGG 59 36093572 36093590 AAGTTTCGTGTTGACTGGC 59 NA Rattus norvegicus 81 Snx2 ENSRNOG00000017832 ENSRNOT00000050631 2 1 1 80 18 48151956 48153491 ACAACCAAGACTTCTCTTTCC 58 48153532 48153551 ATGCAAACCAAGAAAGTCAC 57 NA Rattus norvegicus 81 Gabpb2 ENSRNOG00000021105 ENSRNOT00000028661 2 1 1 80 2 196374057 196374075 TGACAAGTCTGCCTTTGAC 58 196370505 196374014 TGATTCTGCATTGCTTCCTG 59 NA Rattus norvegicus 81 Rn60_2_0094.1 ENSRNOG00000051037 ENSRNOT00000076041 1 1 1 60 2 9496697 9496718 GTAGAAACCTCAACATTGACCT 58 9496739 9496757 GACACAATTTGACCTGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clk4 ENSRNOG00000003714 ENSRNOT00000005048 2 1 1 80 10 36730826 36730844 TCAGCCTTGTGATGTTTGG 58 36730883 36732176 CTATCATGAGTCTGAAAGACTGTG 59 NA Rattus norvegicus 81 AABR07004678.1 ENSRNOG00000052842 ENSRNOT00000089920 2 1 1 60 1 149777878 149777896 CAATCGGCAAAGTGGTCTC 59 149777836 149777856 ATGAGAGGGTTGACTAAAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scyl2 ENSRNOG00000024955 ENSRNOT00000002638,ENSRNOT00000082016 2 2 2 80 7 30293413 30294239 TCAAACAGACTAAGGACTTGAC 58 30293354 30293372 TCTTAGGAGTGCTAACGGA 57 NA Rattus norvegicus 81 Mast3 ENSRNOG00000022753 ENSRNOT00000078108,ENSRNOT00000037756 3 2 2 80 16 20408219 20408354 TGTCAGTGATGAGATCATGTG 58 20408395 20408414 CGCAGAAGCCTAGTAATGAG 58 NA Rattus norvegicus 81 LOC100912852 ENSRNOG00000047003 ENSRNOT00000071620 1 1 1 135 9 12420447 12420932 ACAGTTCCTACCGCATCAG 60 12421031 12421049 GTCTCCACAGAGGATGCTG 60 NA Rattus norvegicus 81 Nfkb2 ENSRNOG00000019311 ENSRNOT00000026235 1 1 1 80 1 266058872 266058890 ACATGGGTCTTCATGAGGG 59 266058933 266059031 CTTCTTTCACCTCTGTGCTG 59 NA Rattus norvegicus 81 Farp2 ENSRNOG00000018051 ENSRNOT00000024440 1 1 1 80 9 100707231 100707249 AGTTCAAGAACGTCCAGTC 57 100708083 100710118 CATTCTTAGGCTTTCGCAC 57 NA Rattus norvegicus 81 Rn60_X_0655.1 ENSRNOG00000051282 ENSRNOT00000076575 1 1 1 60 X 64528958 64528976 TGGATGTGGTGAAGGTCTG 59 64528916 64528936 GTTGTCAATTCACTGGCTACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phb ENSRNOG00000046799 ENSRNOT00000075733 2 1 1 80 10 83480064 83480085 ACAGAAGCCAATCATCTTTGAC 59 83480124 83483452 ACATTCTGCAAGTCTTTGCTG 60 NA Rattus norvegicus 81 Dtymk ENSRNOG00000018904 ENSRNOT00000025644,ENSRNOT00000085029 3 2 2 106 9 100929097 100929116 GAAATCGGCAAGCTTCTGAG 60 100927054 100929030 ATTAATGGCACTTGTTCCCAG 59 NA Rattus norvegicus 81 Prkcdbp ENSRNOG00000017914 ENSRNOT00000024119 1 1 1 85 1 170317713 170318273 GCTCTTCAAGGAGGAGACTG 60 170317647 170317665 CTAGCACCAACTGGTCCTC 60 NA Rattus norvegicus 81 Rn60_2_0457.1 ENSRNOG00000018068 ENSRNOT00000024327 3 1 1 84 2 26471258 26471276 AGAAGATCACGCATACCGG 60 26471386 26471405 TCATTCACCTCTTTCTGACG 58 NA DesignNoJunction Rattus norvegicus 81 Fam174a ENSRNOG00000019087 ENSRNOT00000050494,ENSRNOT00000080129 3 2 2 113 9 102863285 102863303 GAGTCCCAATCCTAGCGAC 60 102863379 102873769 CTTCTTCTCATCCTGACGGT 59 NA Rattus norvegicus 81 Tubb4b ENSRNOG00000010170 ENSRNOT00000013863 1 1 1 95 3 2443901 2444225 GTTCTGGGAGGTAATCAGC 58 2443824 2443842 TAGTACACGTTGATGCGCT 60 NA DesignNoJunction Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000092187,ENSRNOT00000020012,ENSRNOT00000089536 2 3 7 76 17 57082682 57082701 AGAAGAAGCAACTCGAAAGC 59 57087779 57087797 TCTTCTTCCTGCGACACTC 60 NA DesignNoJunction Rattus norvegicus 81 Rnf187 ENSRNOG00000049219 ENSRNOT00000073082 3 1 1 111 10 45274499 45275084 CATGCTTCTGCAGTGATGAC 60 45274407 45274426 GCCTAAGGGATGTAGGTAGG 59 NA InUTR Rattus norvegicus 81 Stxbp5l ENSRNOG00000002496 ENSRNOT00000041715 2 1 1 80 11 66495576 66495597 TAACAGAGCTGAATGATAGTCC 58 66495636 66538244 AGTGTCCATTTACATGGTCTG 58 NA Rattus norvegicus 81 Hras ENSRNOG00000016611 ENSRNOT00000022363,ENSRNOT00000079464 2 2 2 80 1 214180366 214180580 ATCCCACTATAGAGGACTCC 57 214180305 214180324 CTGCTGTGTCTAAGATGTCC 58 NA Rattus norvegicus 81 Hras ENSRNOG00000016611 ENSRNOT00000022363,ENSRNOT00000079464 3 2 2 80 1 214180365 214180581 GATCCCACTATAGAGGACTCCT 60 214180306 214180326 TGCTGTGTCTAAGATGTCCAG 60 NA Rattus norvegicus 81 Wdr62 ENSRNOG00000020807 ENSRNOT00000082555,ENSRNOT00000065011 1 2 2 80 1 88713381 88713399 ATGAGCTGATCAAGGTGGA 58 88711331 88713337 GCAAAGTCACTCCTGTCTC 58 NA Rattus norvegicus 81 Cntln ENSRNOG00000043151 ENSRNOT00000008757 2 1 1 80 5 103261087 103261107 TCACTCCGTCAAGGTTATGAG 60 103261149 103292470 GAATCACTGCTGCCTTCAC 59 NA Rattus norvegicus 81 Plp1 ENSRNOG00000002419 ENSRNOT00000003283 1 1 1 80 X 107506760 107506778 CCAGTCTATTGCCTTCCCT 59 107506820 107507448 GGGAGAACACCATACATTCTG 59 NA Rattus norvegicus 81 LOC100911679 ENSRNOG00000047767 ENSRNOT00000070843 1 1 1 80 2 194558563 194558584 AGTCAATGGTAGAGTCACATCC 60 194558624 194718250 GGATCAGAAAGCACTCTTGC 59 NA Rattus norvegicus 81 LOC100911679 ENSRNOG00000047767 ENSRNOT00000070843 2 1 1 81 2 194558560 194558580 GGAAGTCAATGGTAGAGTCAC 58 194558623 194718248 ATCAGAAAGCACTCTTGCA 57 NA Rattus norvegicus 81 Ms4a6bl ENSRNOG00000050395 ENSRNOT00000074127 1 1 1 80 1 227246037 227248815 AAATCTTTGGTAGATGGCAGC 59 227248854 227248875 GACAGAGATGATAATGATGCCC 59 NA Rattus norvegicus 81 Olr247 ENSRNOG00000048525 ENSRNOT00000049260 2 1 1 60 1 172283438 172283458 ATGTACTTCTTTCTCAGCCAC 58 172283477 172283498 GTGTAACAGATGATGAGTAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B3gntl1 ENSRNOG00000049724 ENSRNOT00000071141 1 1 1 80 10 110807923 110814351 TTCAGTCCTTGAGATGACCA 58 110807862 110807880 GTGAAGGACTTCCAGTGAG 58 NA Rattus norvegicus 81 Ssbp4 ENSRNOG00000019698 ENSRNOT00000026713 2 1 1 80 16 20587465 20587684 CATCCATGAACATGGGTCC 58 20587816 20587835 GAGATGAGGAAGAGTACGGG 59 NA Rattus norvegicus 81 Pdcd5 ENSRNOG00000013250 ENSRNOT00000017708 3 1 1 93 1 91175050 91175069 CTTAGCACTTGTGAAGCCTG 59 91173992 91174994 TTCTGACACCTTCCCACTC 59 NA Rattus norvegicus 81 Adam17 ENSRNOG00000060694 ENSRNOT00000081110 3 1 1 80 6 43409923 43409942 ATCATGTACCTGAACAACGA 57 43408767 43409882 ACTATTCCTATCACTGCACTG 57 NA Rattus norvegicus 81 Pea15 ENSRNOG00000046996 ENSRNOT00000070812 1 1 1 80 13 90582038 90583240 GGACAAAGACAACCTCTCCT 59 90581977 90581996 TAGTCAACCACCATCGTGAG 60 NA Rattus norvegicus 81 Plekha7 ENSRNOG00000024602 ENSRNOT00000086681,ENSRNOT00000064706 1 2 2 80 1 185478309 185479014 GACCCAAGATCATCAAGTCC 58 185479056 185479075 GAACATTAAGGTTCCTCCGA 57 NA Rattus norvegicus 81 Skap1 ENSRNOG00000023881 ENSRNOT00000030159 1 1 1 83 10 84576427 84576446 ACGTTTACGAAGTCCTACCA 59 84586072 84593924 AATCGGCATAGTCCACTCG 60 NA Rattus norvegicus 81 LOC100362532 ENSRNOG00000050269 ENSRNOT00000075170 1 1 1 60 4 161309821 161309839 GAAAGCAGAAACACCTGGA 58 161309779 161309797 CCTTGTCCCAAAGCTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Evi5l ENSRNOG00000001034 ENSRNOT00000034124 2 1 2 80 12 2603700 2604159 ACACATACAACAGGAGCAG 58 2603638 2603658 GATGATGCATACATGGATGTG 57 NA Rattus norvegicus 81 Evi5l ENSRNOG00000001034 ENSRNOT00000079918 1 1 2 80 12 2590184 2590202 AGCACAGAACAAGGGACTC 60 2590039 2590141 TCCTCCTTACTCTTGCACTC 59 NA Rattus norvegicus 81 Penk ENSRNOG00000008943 ENSRNOT00000089318,ENSRNOT00000011892 2 2 2 113 5 17057397 17060908 CATCAACTTCCTGGCATGC 60 17057302 17057320 TTATCCCAAGGGAACTCGG 59 NA Rattus norvegicus 81 Tlcd2 ENSRNOG00000037275 ENSRNOT00000056355 3 1 1 80 10 62304519 62305234 ACCACCTAGTGGTAGTGAG 58 62305273 62305296 GAAGTAGAGATACCATAGAGAAGC 58 NA Rattus norvegicus 81 Rala ENSRNOG00000013454 ENSRNOT00000018190 1 1 1 93 17 49717383 49717402 ACAACTACTTCCGAAGTGGG 60 49717458 49721428 ATCTGTTCCCTGAAGTCCG 59 NA Rattus norvegicus 81 Srp14 ENSRNOG00000007512 ENSRNOT00000009866 2 1 1 83 3 110246450 110246992 GTGAATAAGTTTCAGATGGCCT 59 110246388 110246408 ACTCTTGTTCTTCTTGTCCCT 59 NA Rattus norvegicus 81 Gcsh ENSRNOG00000011535 ENSRNOT00000015967 3 1 1 85 19 49529084 49529102 CACAGAGAAGCACGAATGG 59 49527358 49529035 CATCTCCCAAAGCTTCCTG 58 NA Rattus norvegicus 81 Fam13c ENSRNOG00000000275 ENSRNOT00000051491,ENSRNOT00000000756 3 2 2 80 20 19381961 19383287 GCAGTTTATGATGCCACGA 59 19381899 19381918 TTAGTGAGCTGCGTAATGGT 60 NA Rattus norvegicus 81 Dhx36 ENSRNOG00000014599 ENSRNOT00000019824 3 1 1 80 2 152798182 152798203 CTGAGTAGGTTAATGGATCCAC 58 152796827 152798141 ATCCAAAGCACTCAGTTCC 58 NA Rattus norvegicus 81 Lyzl6 ENSRNOG00000003501 ENSRNOT00000004650 1 1 1 80 10 91696178 91697242 GACTGTGAAGAACTACTGAATCC 59 91696120 91696138 CATCCCTCCAGATCCAGAC 59 NA Rattus norvegicus 81 Cmip ENSRNOG00000013178 ENSRNOT00000017941,ENSRNOT00000083991 1 2 2 80 19 49989892 49989911 CTGGTTCCAGCTCTACAGTC 60 49989953 49993124 ATGAGGATATGCACCATGCT 59 NA Rattus norvegicus 81 LOC500035 ENSRNOG00000031207 ENSRNOT00000050722 1 1 1 83 4 40161345 40161363 ATCACTGCTGATGTTGGCT 60 40161409 40165800 TGTATTGGCATGAGTACCCA 59 NA Rattus norvegicus 81 Tceal1 ENSRNOG00000002387 ENSRNOT00000044372 2 1 1 93 X 107370506 107370524 TTGGTCGAGAAGGAAAGCA 59 107371315 107371334 GCTCTGTGGTTGTTCTTCAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Epha1 ENSRNOG00000017525 ENSRNOT00000024037 1 1 1 80 4 71749820 71751293 AACTTTGACCCTAGGGTGAC 59 71749759 71749777 CCACTCAGAGACACTTCGA 59 NA Rattus norvegicus 81 Rnf168 ENSRNOG00000043345 ENSRNOT00000002395 2 1 1 80 11 71736025 71736043 AGACGAAGTGAGATGGAGG 59 71732393 71735984 GTAGTTACTGTTGATGCTGGTG 59 NA Rattus norvegicus 81 Galr2 ENSRNOG00000061733 ENSRNOT00000012523,ENSRNOT00000075548 3 2 2 89 10 105157113 105157131 TGCAAGGCTGTTCATTTCC 59 105157184 105158209 GATGGCCAGATACCTGTCC 60 NA Rattus norvegicus 81 Slc51a ENSRNOG00000001765 ENSRNOT00000002405 3 1 1 80 11 71545385 71545407 GCCTTCTTCAAGATAGTGATGAG 59 71545446 71545699 CTCAGAAATTTCTGCTGGGT 58 NA Rattus norvegicus 81 Mrm1 ENSRNOG00000027901 ENSRNOT00000030885 3 1 1 81 10 72138738 72138756 CTGCTCCTTACCATTCTGC 58 72138534 72138695 GAAGAATTCCTGTAGCCACAG 59 NA Rattus norvegicus 81 Fam183b ENSRNOG00000002873 ENSRNOT00000003841 2 1 1 80 10 44736734 44740327 CATCCCTTGATCAACCCAG 58 44736672 44736692 AGCTTTGTACAGAGTGATGTC 58 NA Rattus norvegicus 81 Siah3 ENSRNOG00000043061 ENSRNOT00000064945 2 1 1 61 15 57505578 57568089 CTAAAGTATGTGTCTAGTAGACGG 58 57568109 57568127 TGGAAGCTACCTTGCTCAG 59 NA DesignNoJunction Rattus norvegicus 81 Mfi2 ENSRNOG00000001739 ENSRNOT00000002373 2 1 1 80 11 72140078 72140096 ATGCTGTCATGGTTCATCC 58 72138337 72140034 CGTCTCCAAATAGGTCCTG 57 NA Rattus norvegicus 81 Dhps ENSRNOG00000004219 ENSRNOT00000005656 3 1 1 81 19 26185442 26185460 GGGCTATACGTCCAACCTC 60 26185502 26186202 CAGTACATCCACCATATTGTGC 60 NA Rattus norvegicus 81 LOC100912259 ENSRNOG00000048722 ENSRNOT00000071597 2 1 1 60 4 170104341 170104360 ATCCAAAGTTACGAGAAGCA 57 170104300 170104320 CATGATGGTACTTCTCTGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1306186 ENSRNOG00000037039 ENSRNOT00000033718,ENSRNOT00000091144 1 2 2 80 5 99178278 99179097 GAAAGAATTCCTCAGGTGCC 59 99179139 99179158 TCCAAGTCTGACTGTGAGAG 59 NA Rattus norvegicus 81 Svs1 ENSRNOG00000008714 ENSRNOT00000011588 2 1 1 84 4 78643472 78643490 CAACCAGAACCATCACTGG 59 78643538 78643814 CACCAAGTCCTCATCTTCG 58 NA Rattus norvegicus 81 Adss ENSRNOG00000004481 ENSRNOT00000005961 2 1 1 80 13 95919333 95919353 GTTTACGGAGATCAAAGTCGG 59 95917931 95919292 AAGACTTCTTGGTTTGCTGG 59 NA Rattus norvegicus 81 Ercc4 ENSRNOG00000048121 ENSRNOT00000004563 2 1 1 82 10 2024436 2026135 ATTCGACAAGACAATCCGC 59 2024372 2024390 TCAAATCCTGCACCAAGGA 59 NA Rattus norvegicus 81 Olr121 ENSRNOG00000048603 ENSRNOT00000048499 1 1 1 60 1 168819413 168819433 CAATATGTCATCCCTCATGCC 59 168819373 168819391 TGCCACTTGCCAATTTCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0636.2 ENSRNOG00000046012 ENSRNOT00000074319 2 1 1 60 X 62959536 62959556 ATTGATTCCACAGATGAGGAG 58 62959577 62959596 AAACCACCTTCTCAAATGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cilp ENSRNOG00000029911 ENSRNOT00000044887 3 1 1 80 8 70771123 70771141 AGTACTTCTGTAAGGCGCA 59 70771185 70773102 CCTCATCGTGTGCAATGAC 59 NA Rattus norvegicus 81 Bnc2 ENSRNOG00000006553 ENSRNOT00000067389,ENSRNOT00000086635 3 2 2 80 5 102434480 102528792 ATACATCCTTCAGGACGCT 58 102434418 102434437 TGAAGGGTGATGATTTCCTC 57 NA Rattus norvegicus 81 Gna13 ENSRNOG00000036745 ENSRNOT00000055062 1 1 1 80 10 97649902 97649920 GAGCCTTATGGGATGACAG 57 97649961 97676048 AATACTTTACAGACTCACCCAG 58 NA Rattus norvegicus 81 Ggct ENSRNOG00000034084 ENSRNOT00000043752 1 1 1 80 4 85188002 85189383 TCTGGATGAACAAGAAGGAG 57 85187941 85187959 ATGTCCTTCCCTTGTTGAG 57 NA Rattus norvegicus 81 Emc1 ENSRNOG00000018097 ENSRNOT00000068168 1 1 1 80 5 157821017 157822329 AAGTTTGACTGGAGACAGC 58 157822372 157822391 AACCAACTTCTTGGATCCAG 58 NA Rattus norvegicus 81 Ndufb6 ENSRNOG00000024539 ENSRNOT00000029712 2 1 1 81 5 56575207 56575226 ACGTCAAATATCATGTGGCT 58 56567306 56569036 TCCAGAATTGTATCACCTGGA 59 NA Rattus norvegicus 81 Sec11a ENSRNOG00000011029 ENSRNOT00000015218 3 1 1 80 1 142740015 142740035 GAGGCCTCTATAAACAAGGAC 58 142734267 142739974 CAATGTACGGAACAAACCCT 59 NA Rattus norvegicus 81 Fxyd5 ENSRNOG00000021062 ENSRNOT00000028597,ENSRNOT00000089474 3 2 2 80 1 89468690 89468708 CCAAAGGTTACATGCCTCC 59 89467513 89467650 TGGTATTGTCGTAGTAGAAGGG 59 NA Rattus norvegicus 81 AABR07072593.1 ENSRNOG00000056718 ENSRNOT00000080986 3 1 1 119 18 48129647 48129665 TGCAGGACAAAGTCAAGGA 59 48129543 48129564 CTCTCATCCCAGCCTTCAC 60 NA Rattus norvegicus 81 Tmem80 ENSRNOG00000018061 ENSRNOT00000032904,ENSRNOT00000078754 1 2 2 82 1 214322171 214322839 TTCAAGGTGCTCTCGTCAG 60 214322884 214322903 AGTGTGGCTAGGAAGTACAG 59 NA Rattus norvegicus 81 Prpf39 ENSRNOG00000004521 ENSRNOT00000066702 1 1 1 80 6 86792528 86792985 GAACAGGAGAATCACTTGATGG 59 86793024 86793044 CCAGTAACCATAGCAATACGG 59 NA Rattus norvegicus 81 Napg ENSRNOG00000018914 ENSRNOT00000065802,ENSRNOT00000077726 1 2 2 80 18 58333470 58333489 GAAAGCCAGCATGATGTACC 59 58333531 58333673 TCTATGAGCTTTCCTGCTCG 60 NA Rattus norvegicus 81 Tnfsf9 ENSRNOG00000045595 ENSRNOT00000071515 2 1 1 111 9 9911800 9911818 ATACTGCAGACCAGGTCAC 59 9910682 9911387 TTACTCAGCGATGCTTGGT 59 NA Rattus norvegicus 81 Dhx34 ENSRNOG00000047575 ENSRNOT00000089718,ENSRNOT00000075327 1 2 2 80 1 78105722 78105740 CTGTCCACCAACATTGCAG 60 78104384 78105679 CATCTCCTTCACCTTCCCAG 60 NA Rattus norvegicus 81 Dhx34 ENSRNOG00000047575 ENSRNOT00000089718,ENSRNOT00000075327 2 2 2 80 1 78104235 78104254 GACTATGATGCCTTTGCTCC 59 78102138 78104193 ACTCTTCATCTGAAGCACCA 59 NA Rattus norvegicus 81 Phc3 ENSRNOG00000009491 ENSRNOT00000089477,ENSRNOT00000066495 2 2 2 80 2 116040719 116040739 AGTGGAAGACCATCTACATCC 59 116040778 116051329 AGTGGAGAGGTTGATAGATGTC 59 NA Rattus norvegicus 81 Ccdc9 ENSRNOG00000048848 ENSRNOT00000075700 3 1 1 80 1 78215199 78215419 CTCGTGCCTATAGTGACCA 59 78215137 78215155 TGGACTGAGAGGATTTGGG 59 NA Rattus norvegicus 81 RGD1306441 ENSRNOG00000031449 ENSRNOT00000043065 3 1 1 114 15 80040889 80041269 GCTAAGTAAATGCTCGGGC 59 80041342 80041365 GTGCACTACTGATAATCTCAACAG 60 NA InUTR Rattus norvegicus 81 RGD1563483 ENSRNOG00000050184 ENSRNOT00000034101 1 1 1 80 15 52782988 52783009 CATTGATGAAGACACCTAACCT 58 52783048 52783536 TGTTGGTGAAACTTGTCAGTC 59 NA Rattus norvegicus 81 Clspn ENSRNOG00000011332 ENSRNOT00000015227 3 1 1 80 5 144607154 144609691 GAAACGGCAAATGAGACTG 57 144609735 144609753 TACTCGTCTTCACTTCCCA 58 NA Rattus norvegicus 81 Rab3a ENSRNOG00000019433 ENSRNOT00000026391 2 1 1 84 16 20436538 20436556 GAACAAGTGCGACATGGAG 59 20435883 20436491 AAAGAACTCAAAGCCCAGGT 60 NA Rattus norvegicus 81 Pik3cd ENSRNOG00000016846 ENSRNOT00000066179 3 1 1 80 5 166608865 166609626 CTGGAGAAGATCCTGGAGC 59 166608469 166608487 GGAGCACAGCAAATAGAGC 59 NA Rattus norvegicus 81 Isoc1 ENSRNOG00000019711 ENSRNOT00000026706 1 1 1 80 18 53738469 53740927 TGCTGTTTGGAGTAGAAACAC 59 53740968 53740987 CGATGTGGACCTCAATACCT 59 NA Rattus norvegicus 81 RGD1563056 ENSRNOG00000009178 ENSRNOT00000012164 3 1 1 83 5 50210798 50213060 CAGAGAAGCATAGTCCTGGA 59 50210734 50210752 GATCAACTGACCCAAGCTG 59 NA Rattus norvegicus 81 AABR07016056.1 ENSRNOG00000004090 ENSRNOT00000005432 2 1 1 60 14 93041311 93041329 TACCAGTCCTGAGTCTCCA 59 93041269 93041289 GTAGTCCTCCATGTAGAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Reep3 ENSRNOG00000000645 ENSRNOT00000067920 1 1 1 80 20 22986000 22986019 GGACACAGACCTTACCAGAC 60 22986062 22993727 CGGAATTCCATAGGCTGGT 60 NA Rattus norvegicus 81 Otog ENSRNOG00000010983 ENSRNOT00000068434 1 1 1 80 1 102322510 102322529 CAATGAAACTGAGTGTGCCA 59 102323333 102325510 CCATCCTCCTTACACGTCC 60 NA Rattus norvegicus 81 AC103493.1 ENSRNOG00000050390 ENSRNOT00000074475 2 1 1 83 4 1710575 1710595 GCTGGTTTGGATTGTCCAG 59 1710510 1710528 AATGTTTCCCACCACTGTG 58 NA Rattus norvegicus 81 Prm2 ENSRNOG00000002539 ENSRNOT00000003450 1 1 1 102 10 4950654 4950672 TCACAGGATCCACAAGAGG 59 4950860 4950878 CCTCCTTCGGGATCTTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Cenpl ENSRNOG00000038789 ENSRNOT00000076513,ENSRNOT00000076873 2 2 2 60 13 78900879 78900897 TCTGGAACCCAGTAGTGGT 60 78900920 78900939 GACATGATGGGTACACAAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam50a ENSRNOG00000045790 ENSRNOT00000073104 3 1 1 80 4 104954578 104954760 ACTGTTAAGATGAAGAAGGGC 58 104954802 104954820 CTCACTGAAGTCTTTCCGC 59 NA Rattus norvegicus 81 Npm2 ENSRNOG00000025638 ENSRNOT00000032832 3 1 1 81 15 52340741 52341956 CAGGAATGTTATGAGACTTCAGAC 59 52340683 52340703 CCTCATCTTCATCCTCTTCCT 59 NA Rattus norvegicus 81 AABR07007928.2 ENSRNOG00000059867 ENSRNOT00000087827 1 1 1 60 2 35435571 35435589 GCACGATCATCCTGATCCT 59 35435529 35435548 CTGAGGAAGAAGTACATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrpl22 ENSRNOG00000027039 ENSRNOT00000029238 2 1 1 80 10 43609803 43609824 CTCTTAGAAGCACAAGACATGG 59 43609863 43611833 TGAGGTAGACTCAGCTATGTG 59 NA Rattus norvegicus 81 Tmem263 ENSRNOG00000006987 ENSRNOT00000009154 2 1 2 80 7 24660070 24667072 CCGGTGATCATGAATCAGG 58 24653191 24660026 TTTCATTGACCCTTCTGGG 57 NA InUTR Rattus norvegicus 81 Olr150 ENSRNOG00000017143 ENSRNOT00000023007 1 1 1 60 1 169386828 169386849 TTCTGCTTTATCTATCTGGTGG 58 169386789 169386808 CTGCGATGAGGTAGAGAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Riok1 ENSRNOG00000014049 ENSRNOT00000084417,ENSRNOT00000018936 1 2 2 80 17 27433732 27433754 GAGATGTGGACATAATGATGAGG 59 27432374 27433698 CAGTCTGGTATAGAATATTGTCCTG 59 NA Rattus norvegicus 81 Plscr5 ENSRNOG00000047917 ENSRNOT00000073400 3 1 1 80 8 99569137 99569158 TGGTCTAGAGTATCTAAGCCAG 58 99573353 99574240 TCAGTGCCGAGTATCATCC 59 NA Rattus norvegicus 81 LOC100366140 ENSRNOG00000047627 ENSRNOT00000038642,ENSRNOT00000074174 2 2 2 81 1 88558195 88558296 ACCAGCGAATTCATGTAAGAG 59 88558134 88558155 ATGATTAGCTCTGACCTGTAGG 59 NA Rattus norvegicus 81 Gpr63 ENSRNOG00000007675 ENSRNOT00000010081 3 1 1 81 5 39329620 39329639 GATGCTTGTTAGTGCTGTGG 60 39329681 39368762 ATCTGTTTGCTGTTTCCACAG 60 NA InUTR Rattus norvegicus 81 LOC100910849 ENSRNOG00000047384 ENSRNOT00000072173 2 1 1 123 11 72086623 72086641 CAGTCACCTGAGGTCATGG 60 72084674 72084692 AGAAGGTAGAGCCAGAGGT 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_X_0659.1 ENSRNOG00000051219 ENSRNOT00000076711 1 1 1 60 X 65014879 65014897 AAAGTTCTCAGTGCTGTGG 58 65014837 65014855 GGAACTGCTGCGATTTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0659.1 ENSRNOG00000051219 ENSRNOT00000076711 3 1 1 60 X 65014964 65014983 TTCAGGCAGAAATGGAGAGG 60 65014923 65014941 TCTTTGGTCTCCTTGTCCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sipa1l1 ENSRNOG00000007646 ENSRNOT00000010626,ENSRNOT00000088917 2 2 3 104 6 106068448 106072526 CTAGTGAGCTCATGACACTG 58 106072593 106072611 GTTCCAGCACCTCTTTCAG 59 NA Rattus norvegicus 81 Mapre1 ENSRNOG00000011798 ENSRNOT00000087752 3 1 2 157 3 149235270 149235289 TCAAGAGGATGGGCTTGAC 59 149237187 149237206 TTTCTTGACCTTGTCTGGCA 60 NA InUTR Rattus norvegicus 81 Inpp5b ENSRNOG00000048506 ENSRNOT00000067762 1 1 1 80 5 142787889 142787908 TCCCATCCATACATTGTGCT 59 142787951 142789875 GTCATCAAGGTCAGCTCGT 60 NA Rattus norvegicus 81 Cebpa ENSRNOG00000010918 ENSRNOT00000014517 2 1 1 60 1 91364508 91364527 GCCGAGATAAAGCCAAACAG 60 91364550 91364568 CTGGTCAACTCCAACACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hadha ENSRNOG00000024629 ENSRNOT00000038649 3 1 1 80 6 27607407 27607425 CTGGTAGGAACATTCGTGC 59 27607469 27613233 TTATTCCTGGTCCTAGCGG 59 NA Rattus norvegicus 81 Sdr9c7 ENSRNOG00000004459 ENSRNOT00000005919 1 1 1 80 7 71162682 71162700 TGAGAAAGCTGTGGGATCG 60 71162742 71168702 ACTTGTCAGTGTAGGTTTGGA 59 NA Rattus norvegicus 81 Sdr9c7 ENSRNOG00000004459 ENSRNOT00000005919 3 1 1 81 7 71161702 71162591 TCTGATAGCATCAGGCGAG 59 71162631 71162654 GAATGGATGTCTTGTAGTTTCCTG 60 NA Rattus norvegicus 81 Vat1l ENSRNOG00000011989 ENSRNOT00000075628 2 1 1 82 19 46615177 46615197 AGCTCATAGGACTGTACAACC 59 46615241 46689605 CATGGCCTCCTTTACCTCC 60 NA Rattus norvegicus 81 Carhsp1 ENSRNOG00000002610 ENSRNOT00000003514 3 1 1 85 10 7050009 7052406 TGCACATCTCTGATGTGGA 59 7052455 7052473 ATTCTTGGGCGGGATAGAG 59 NA Rattus norvegicus 81 C1ql2 ENSRNOG00000046863 ENSRNOT00000071305 2 1 1 109 13 36378893 36378911 GTACCACATCCTCATGCGT 60 36379567 36379585 CATAATTCTGGTCCGCGTC 59 NA DesignNoJunction Rattus norvegicus 81 Yipf6 ENSRNOG00000006642 ENSRNOT00000008705,ENSRNOT00000090942 2 2 2 80 X 68630150 68631792 TGTCACTTGCATTGATGCT 58 68631836 68631854 CGAACACTTCTGCAAACTC 57 NA Rattus norvegicus 81 Cep104 ENSRNOG00000025000 ENSRNOT00000031138,ENSRNOT00000077307 3 2 2 80 5 171280269 171280288 AAGAAAGAAGAGACGAAGGC 58 171280330 171281216 ATTCTCCTTCTCCTGGACTC 58 NA Rattus norvegicus 81 Cd99l2 ENSRNOG00000023841 ENSRNOT00000092079 3 1 2 235 15 5306564 5306582 TTCTGTTTCAGTGTCCAGC 58 5307861 5307879 GATGAACGGAGGACATCAG 58 NA DesignNoJunction Rattus norvegicus 81 Tyrobp ENSRNOG00000020845 ENSRNOT00000028284 3 1 1 80 1 88876867 88879066 TGAGTCACCTTATCAGGAGC 59 88879106 88879127 CATCTGTAATACTGCCTCTGTG 59 NA Rattus norvegicus 81 Scin ENSRNOG00000004498 ENSRNOT00000005988 1 1 1 80 6 59997373 59997755 ATACTCAAATTCAGGTACTCCC 57 59997314 59997334 GGTCTTTATCCTTCCAATCCT 57 NA Rattus norvegicus 81 Atic ENSRNOG00000015511 ENSRNOT00000021105 2 1 1 80 9 78874975 78876147 ACTGTGTTCTTCAGATGGAC 58 78876190 78876208 TCTGGCTTAAACGAAGACC 58 NA Rattus norvegicus 81 Rfwd2 ENSRNOG00000042492 ENSRNOT00000040505,ENSRNOT00000076851 2 2 3 88 13 77000212 77004125 TATCTCAGATGACAGTAGAACTGC 60 77004167 77004190 ACGGTCTTACAGAGTTATATCGAG 60 NA Rattus norvegicus 81 Rab34 ENSRNOG00000023375 ENSRNOT00000082348,ENSRNOT00000037016 1 2 2 80 10 65451254 65451348 GAAGGATCTGAGTACTCCTGC 60 65451387 65451408 TACTCAGCCTTAATCTCTTGGG 59 NA Rattus norvegicus 81 LOC100361174 ENSRNOG00000048515 ENSRNOT00000068076 3 1 1 82 2 191866818 191869121 TTCTAAAGGCAATGGATGAAGG 59 191866757 191866777 GTCCCAAATCTCATCAAAGGT 58 NA Rattus norvegicus 81 LOC100359989 ENSRNOG00000049038 ENSRNOT00000065658 3 1 1 80 3 3237997 3238711 TATACGTTTGACTACCAAGGC 58 3238750 3238771 GCTTTCCAAATCTATGATGGTG 58 NA Rattus norvegicus 81 Lin37 ENSRNOG00000020929 ENSRNOT00000028413 1 1 1 80 1 89012578 89013996 AGTGGAGAAATCAGAGATGGA 58 89012518 89012536 TGACTCTTCTCCAGCAGAC 59 NA Rattus norvegicus 81 Slc22a2 ENSRNOG00000016625 ENSRNOT00000023116,ENSRNOT00000051927 1 2 2 80 1 48345859 48345877 TTGGTGTTTCGCTTTCTCC 59 48343002 48345818 CCCAACAAATTCTGTAATCAGG 58 NA Rattus norvegicus 81 Vps26a ENSRNOG00000030683 ENSRNOT00000067883,ENSRNOT00000081916 3 2 2 93 20 32099566 32099586 ACTCAGAGCAGAAGCTATGAC 60 32098254 32099512 TAAGGAAATACCTCAGGCGG 59 NA Rattus norvegicus 81 Lman1 ENSRNOG00000024470 ENSRNOT00000032047,ENSRNOT00000085784 2 2 2 80 18 61689895 61689914 CTTCATGGACATCAAGGAGC 59 61686816 61689853 TCATTAGATGACATGCTGCG 59 NA Rattus norvegicus 81 AABR07049887.1 ENSRNOG00000047686 ENSRNOT00000074492 3 1 1 60 5 142646362 142646380 GGATGTGTTTGGAGCTTCC 59 142646401 142646422 ACGCTCAAACCTTAAGAAACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rap1gap2 ENSRNOG00000002652 ENSRNOT00000065045,ENSRNOT00000092203 2 2 2 80 10 61207831 61207852 GCATCAAACTTCTTACATGCCT 60 61203316 61207793 GACTGATACCTTGTAGGATGGG 60 NA Rattus norvegicus 81 Ccndbp1 ENSRNOG00000011379 ENSRNOT00000015472 1 1 1 80 3 112951681 112952408 ATCTCCACAGGAAACCCAG 59 112952450 112952470 GGAAATGTGTAGTATGCTGCA 59 NA Rattus norvegicus 81 Psx1 ENSRNOG00000043179 ENSRNOT00000066033 1 1 1 60 3 574170 574188 CAGGAGTCAACAGACTGGG 60 574128 574146 AGTGAACCTGGTGTGACTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cmas ENSRNOG00000013816 ENSRNOT00000018734 2 1 1 80 4 177001555 177001574 TCTGAAACGTCCAAAGACAG 58 177001615 177001755 CACAATGTCAACCTCATTGTG 58 NA Rattus norvegicus 81 Matn1 ENSRNOG00000010932 ENSRNOT00000014666 3 1 1 80 5 149079069 149079087 CAATTCGCCATCACCAAGG 60 149079131 149081105 GACGATGACAACCTTGCTG 59 NA Rattus norvegicus 81 Vash2 ENSRNOG00000003832 ENSRNOT00000005095 1 1 1 80 13 109544095 109544113 TACAGGTTGTCCATGACGA 58 109540453 109544055 CCCTGTATGGTTGTATTGTAGTG 59 NA Rattus norvegicus 81 Olr533 ENSRNOG00000030825 ENSRNOT00000045231 1 1 1 60 3 74574415 74574435 GAATGAACTTCTGCTCTTCGT 59 74574375 74574397 GATGACCAAGATAGTGAGTACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem130 ENSRNOG00000025235 ENSRNOT00000039149 3 1 1 80 12 11838259 11838584 GAAGGATGTAGTGGAGAGCC 60 11838626 11838645 GTGTCCAGAAAGAGGGATCC 60 NA Rattus norvegicus 81 Cdx2 ENSRNOG00000032759 ENSRNOT00000048188 1 1 1 80 12 9469716 9469931 TGTTTGGAGCTGAGGAGAG 59 9469975 9469993 TCTTGGCTCAAGTGTTGCT 60 NA InUTR Rattus norvegicus 81 LOC102555170 ENSRNOG00000046069 ENSRNOT00000071914 3 1 1 81 7 142011526 142011544 GTCCCTCCATCTCATCCAC 59 142011587 142020657 CATAGAGTAGAGGACACCCAG 59 NA Rattus norvegicus 81 Sez6l2 ENSRNOG00000027098 ENSRNOT00000037405 1 1 1 80 1 198386941 198391289 GGATTCACTATCAGGCATACC 58 198391331 198391349 GCAAGTCTGTCACACTCAC 59 NA Rattus norvegicus 81 Mroh2b ENSRNOG00000042327 ENSRNOT00000060376 2 1 1 80 2 54684371 54684392 CATTCATTCACCTTCTTCACCA 59 54684430 54685373 ATGGAGAATAATGGCATCTGTG 59 NA Rattus norvegicus 81 Mroh2b ENSRNOG00000042327 ENSRNOT00000060376 3 1 1 80 2 54660783 54662581 TGGAAGATCAGCTTCTGGAG 59 54662621 54662642 ACTGGAAACTTTCCTCTTTCTG 59 NA Rattus norvegicus 81 Radil ENSRNOG00000024456 ENSRNOT00000033998 3 1 1 86 12 14154731 14155582 AGTTCTAGAAGGAGACGCG 59 14155632 14155650 TAGCAGAAGTCCTCTGTGC 59 NA Rattus norvegicus 81 Gdf1 ENSRNOG00000020142 ENSRNOT00000027275 2 1 1 80 16 20853191 20853319 TACTGGTTCCTGTACATTGTG 58 20853131 20853149 GTATTCCCGCAAGTCTTCC 58 NA InUTR Rattus norvegicus 81 Tnr ENSRNOG00000002468 ENSRNOT00000076860 1 1 3 80 13 77626339 77626357 AGCAGTACCATGAAGTGCT 59 77626399 77626795 GAAATGAAGGAAGCAAACCTG 58 NA Rattus norvegicus 81 Ptgr1 ENSRNOG00000015072 ENSRNOT00000020335 3 1 1 80 5 76120966 76120984 AAACAGTGCTGGTCAATGC 59 76118420 76120922 CAACTTTGCAGCCCTTGAG 60 NA Rattus norvegicus 81 Olr770 ENSRNOG00000047449 ENSRNOT00000075178 3 1 1 60 3 102841832 102841851 TTTCCTCAGTTACCACTCCA 58 102841872 102841892 GAAATGGTCTTGTGTTCCCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc23 ENSRNOG00000007404 ENSRNOT00000066169,ENSRNOT00000009879 1 2 2 80 5 138246199 138246219 AGAGTGGAGAAGGCTAAACAG 60 138246257 138250955 TCTGTTGAGAGCATAGATCTCTG 60 NA Rattus norvegicus 81 Olr781 ENSRNOG00000048229 ENSRNOT00000045743 2 1 1 60 3 103151640 103151658 TTCTCTGGTTCAACTGGCT 59 103151598 103151616 GTCCAACACATTTCGTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nodal ENSRNOG00000000556 ENSRNOT00000000672 1 1 1 80 20 31036145 31036163 ACATGTTGAGCCTCTACCG 60 31036206 31041840 CAGTCACATCCACATCTTGC 59 NA Rattus norvegicus 81 Hrasls ENSRNOG00000001711 ENSRNOT00000002329 3 1 1 80 11 75135390 75135409 CGTCCTTGTTATCAGCACTG 59 75132745 75135348 TGAGGGAATGCCATCTACAG 59 NA Rattus norvegicus 81 Vom1r70 ENSRNOG00000047591 ENSRNOT00000075356 2 1 1 60 1 103064552 103064571 TCTATCTCTGTCACCTGCCT 60 103064593 103064612 AGGTACTGGGACTGATAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp20 ENSRNOG00000007710 ENSRNOT00000010786 3 1 1 80 3 9850311 9850329 GTTCAACACCTTTGCAGAG 57 9850370 9850467 TATTTATTGGGTGGGATACCTC 57 NA Rattus norvegicus 81 Mamdc4 ENSRNOG00000016584 ENSRNOT00000022390 1 1 1 80 3 2791166 2791603 CCCATCCATTTCGGATCCT 59 2791104 2791123 GGTTGGACATGATAAGGTCG 59 NA Rattus norvegicus 81 Mamdc4 ENSRNOG00000016584 ENSRNOT00000022390 3 1 1 80 3 2792889 2793072 CCACACTGACTCTAGAGATGTC 60 2792830 2792849 GAGCTCTGCCATAGAGTCAG 60 NA Rattus norvegicus 81 Amn1 ENSRNOG00000036917 ENSRNOT00000055441 2 1 1 80 4 183671071 183676101 CCTGATAACAGATCATTCACGA 58 183671012 183671032 TAAACAGACCAAGTCACTTGC 59 NA Rattus norvegicus 81 Aldh1b1 ENSRNOG00000011497 ENSRNOT00000015281 3 1 1 124 5 61382366 61382384 CCAGAATTTGAGCCTGAGC 59 61385284 61385302 AATATGAGGTGGTCCTGCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fgf12 ENSRNOG00000001931 ENSRNOT00000002650,ENSRNOT00000071586 1 2 2 99 11 76151525 76151545 AGAAGGTCAAATCATGAAGGG 58 76168674 76168695 AGATGGTTCTCTGTACATACAC 57 NA DesignNoJunction Rattus norvegicus 81 Chrna4 ENSRNOG00000011202 ENSRNOT00000084339,ENSRNOT00000009041 1 2 2 80 3 176542763 176542782 CTACGAGAATGTCACCTCCA 59 176538232 176542721 CCATCCGCATTGTTGTAGAG 59 NA Rattus norvegicus 81 Pex7 ENSRNOG00000012322 ENSRNOT00000016728 3 1 1 80 1 15349244 15349262 TCCGAATTGTGATTCCAGC 58 15348028 15349200 CTGTCACCAGCAAGTTCTC 59 NA Rattus norvegicus 81 RGD1309594 ENSRNOG00000001215 ENSRNOT00000049745 3 1 1 80 20 11419254 11419684 ACACAGAGGAGACAGAAGTC 59 11419193 11419214 GATTCTTCATAGTGTCCCTTGG 59 NA Rattus norvegicus 81 Krt79 ENSRNOG00000058340 ENSRNOT00000081518 1 1 1 80 7 143534832 143534955 GCTTAAGAAGGATGTAGATGCTG 59 143534774 143534794 TCAATCTCTTGGATCAGGCTC 60 NA Rattus norvegicus 81 Olr651 ENSRNOG00000047268 ENSRNOT00000048750 3 1 1 60 3 77110649 77110668 GTCCCATGTACTTCTTCCTG 58 77110608 77110627 ACAGTTGTAGAGAAGCAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpinb6 ENSRNOG00000017962 ENSRNOT00000024161 1 1 1 80 17 32204406 32204425 CAAAGGAAACTGGGACAAGC 60 32204467 32208641 GGTTTCTCCTCAGTCTTGCT 60 NA Rattus norvegicus 81 RGD1306063 ENSRNOG00000039871 ENSRNOT00000084687,ENSRNOT00000061214 2 2 2 80 15 12876869 12876889 ATAGATGTTGCAGAGAAGGCT 59 12873173 12876830 GTAACGAGTCTCAAGAGAAAGC 59 NA Rattus norvegicus 81 Lamtor3 ENSRNOG00000010552 ENSRNOT00000014027 2 1 1 82 2 243170083 243170104 GTGGTTCAATTCAATCGTTTGC 60 243170144 243172275 TCTAGGCTGACAATTAGTCCTG 59 NA Rattus norvegicus 81 Lamtor3 ENSRNOG00000010552 ENSRNOT00000014027 3 1 1 97 2 243169671 243169695 CATCTGCTACTATAATACCTACCAG 58 243170136 243172265 CAATTAGTCCTGTGTTGGCA 59 NA Rattus norvegicus 81 Nudcd3 ENSRNOG00000056148 ENSRNOT00000083191 3 1 1 106 14 86333277 86333295 GCTTTCTCTACCGCAAGAC 59 86326735 86333208 TTTAAAGACCTGCAACACCA 58 NA Rattus norvegicus 81 Agr2 ENSRNOG00000005023 ENSRNOT00000006682,ENSRNOT00000091213 3 2 2 80 6 55482107 55484780 GAATTGTGTTTGTGGACCCT 59 55484823 55484841 GTTCGTAAGCGTAGAGACG 58 NA Rattus norvegicus 81 Sh3bp5l ENSRNOG00000054400 ENSRNOT00000086218 2 1 1 93 10 43769793 43775677 CCTAGGATACAGGAGGAGC 58 43775877 43775895 GATAGGTAGTCCTGGCCTC 58 NA Rattus norvegicus 81 AC099444.1 ENSRNOG00000024617 ENSRNOT00000033807 1 1 1 61 4 78263937 78263955 CTCTGGCTTTGGTTCAGTG 59 78264502 78264520 CACTTCCGGATGCAATCAC 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_14_1003.1 ENSRNOG00000052876 ENSRNOT00000078236 1 1 1 60 14 100260359 100260378 GCTTCATGTGCTGTCTTCTG 60 100260318 100260336 TTCTTGTAGCTCTCCAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prpf40b ENSRNOG00000052539 ENSRNOT00000091306 2 1 1 80 7 140971921 140972250 AAGGAGAAGGAACAAGCCA 59 140972292 140972312 GACACTACTCATCCCATCCAG 60 NA Rattus norvegicus 81 Gmnc ENSRNOG00000038505 ENSRNOT00000058701 2 1 1 80 11 77242180 77244190 AAGGCCAAGAAATTGTTGTC 57 77244231 77244251 TTCTTTGGGTTTCCTCTTCTC 58 NA Rattus norvegicus 81 Nfkbib ENSRNOG00000020063 ENSRNOT00000027212 3 1 1 80 1 86941845 86941866 GATGAGGATGATAAGCTTAGCC 59 86941226 86941807 ATATTCATCGCCTTCATCTCTG 58 NA Rattus norvegicus 81 Jmjd6 ENSRNOG00000000250 ENSRNOT00000064671 3 1 1 81 10 105783267 105783285 CTCTGACAGCTCCAGTGAC 60 105782067 105783224 TTCTGACCCAGATTCACACTC 60 NA Rattus norvegicus 81 Prdm8 ENSRNOG00000002004 ENSRNOT00000002746,ENSRNOT00000071706 3 2 2 83 14 13056815 13056836 AGTTTGGTATGGGAAAGAACTG 59 13056377 13056771 GTGTAAGGAGATGACCCGT 59 NA Rattus norvegicus 81 Dgkg ENSRNOG00000001796 ENSRNOT00000002452 3 1 1 80 11 82063700 82063720 CAGAAATTCCACTACCTGCTC 59 82063761 82066160 AAAGAAGTTCAATCCTGGCG 59 NA Rattus norvegicus 81 Akr1c13 ENSRNOG00000050040 ENSRNOT00000029049 1 1 1 80 17 69639613 69640949 CCAGTGCCAATGAAGTCAG 59 69640992 69641011 ACAGAAATCCACAGTGTCCA 59 NA Rattus norvegicus 81 Olr189 ENSRNOG00000049717 ENSRNOT00000040861 1 1 1 60 1 169952750 169952768 CTGTATGTGGTCGTTCCTC 58 169952791 169952810 TCTGTTTAGTCCTGACTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500148 ENSRNOG00000038471 ENSRNOT00000009001 1 1 1 80 4 88676060 88684036 AATTTCAGGGAGGAAGCCA 59 88675998 88676016 AGACTCAAGCTCATCCTGC 60 NA InUTR Rattus norvegicus 81 Car14 ENSRNOG00000023162 ENSRNOT00000025523 2 1 1 80 2 198011259 198011278 CTAGGTATGGGAATCTCGGC 60 198010603 198011220 CCTCTTCCTCCTAATCTTCTGAG 60 NA Rattus norvegicus 81 Olr13 ENSRNOG00000052361 ENSRNOT00000088514 3 1 1 60 1 149787138 149787159 TACTTCCCATCAGTTACAGACC 59 149787099 149787120 CTCCAAGAATGACAGATTGCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pik3r2 ENSRNOG00000019228 ENSRNOT00000026210 1 1 1 80 16 20422770 20422788 AGCAGTACCAGGACAAGAG 59 20422832 20423156 GCTTCATCTGAAGCTCCTG 58 NA Rattus norvegicus 81 Gjd4 ENSRNOG00000018407 ENSRNOT00000024855 2 1 1 60 17 62298106 62299609 GTAATGTGACCATCATGGGC 59 62298065 62298084 ACCAGCATTCTTAGCAAGAC 58 NA DesignNoJunction Rattus norvegicus 81 LOC100911794 ENSRNOG00000020133 ENSRNOT00000027335 3 1 1 82 1 220429402 220429420 ATCTCTTTGGAGGGCTCAG 59 220429463 220429594 AGAAGAATGTCCCTGGTATGAC 60 NA Rattus norvegicus 81 Rn60_12_0305.1 ENSRNOG00000051210 ENSRNOT00000076527 3 1 1 60 12 28477083 28477104 AATGTCAACTTTGCTTCTCAGG 60 28477125 28477143 ACTGACTGAAGTTTGTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd200r1l ENSRNOG00000002046 ENSRNOT00000043917 2 1 2 80 11 60819227 60819246 CATGCTTTGTGGAAGACTCC 59 60810623 60819188 CTTATCAGGACAACTTGACTCAG 59 NA Rattus norvegicus 81 Cd200r1l ENSRNOG00000002046 ENSRNOT00000042447 1 1 2 80 11 60809836 60819200 CTATGTTGGTGACTGTTAACAC 57 60809777 60809796 TCAGTGGACTAGAAGGACAG 58 NA Rattus norvegicus 81 Cd200r1l ENSRNOG00000002046 ENSRNOT00000042447 3 1 2 80 11 60809831 60819195 TTGGTGACTGTTAACACTACAG 58 60809772 60809792 CTTTGTCAGTGGACTAGAAGG 58 NA Rattus norvegicus 81 Adh6 ENSRNOG00000012436 ENSRNOT00000085067,ENSRNOT00000083682 2 2 3 85 2 243552834 243553405 GCATTAAGATGGTGGCCAC 59 243553454 243553472 TAGAACTGCAGGAAGAGGC 59 NA Rattus norvegicus 81 Perm1 ENSRNOG00000020244 ENSRNOT00000027476 3 1 1 124 5 173640823 173641569 AGAACCAGGACTGTGACAG 59 173641654 173641675 GACAGACTTTCCTTCTTTCCAG 59 NA InUTR Rattus norvegicus 81 Olr283 ENSRNOG00000030782 ENSRNOT00000043307 2 1 1 60 1 173442778 173442796 TTCTTCTCTTTGGTGGGAC 57 173442736 173442754 GCAAATCGATCATAGGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taar1 ENSRNOG00000016073 ENSRNOT00000021510 3 1 1 60 1 22596124 22596143 CCACCTAGCCTTCATTTCCA 60 22596083 22596104 TTTGTATCTTAAAGGGTCGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stard8 ENSRNOG00000033883 ENSRNOT00000043872,ENSRNOT00000081662 2 2 2 84 X 68777364 68777382 ACCTAACGCATCAGTACCC 59 68777430 68778032 GTGCCAACGAAGTTTCCTG 60 NA Rattus norvegicus 81 Nr4a1 ENSRNOG00000007607 ENSRNOT00000078663 3 1 2 181 7 142905769 142905787 CCATCCAGAGTCTGCTCAG 60 142905931 142915514 TTGGATACAGGGCATCTCAG 59 NA InUTR Rattus norvegicus 81 Snx6 ENSRNOG00000005249 ENSRNOT00000007300 1 1 1 80 6 75631759 75633667 TCTCAAGCAGCTAAGGACC 59 75631697 75631717 TTTGTCCAGTGCTTTATTGGC 60 NA Rattus norvegicus 81 Snap47 ENSRNOG00000022472 ENSRNOT00000028948 1 1 1 97 10 45786818 45786836 AAAGGTCCTTCACCACCAG 60 45778624 45786757 CTGTCAGCAATCTGTCAGC 59 NA Rattus norvegicus 81 Snap47 ENSRNOG00000022472 ENSRNOT00000028948 2 1 1 98 10 45786819 45786837 CAAAGGTCCTTCACCACCA 60 45778624 45786757 CTGTCAGCAATCTGTCAGC 59 NA Rattus norvegicus 81 Tsta3 ENSRNOG00000009020 ENSRNOT00000012306,ENSRNOT00000082058 3 2 2 83 7 116959578 116959850 AGTTCATCTACTCACTGGACC 59 116959515 116959533 CTGAGAGGATGATGGGCTC 59 NA Rattus norvegicus 81 RGD1310081 ENSRNOG00000042118 ENSRNOT00000063899 2 1 1 80 2 57335918 57335938 CAAGTGTTAGTTTCCGACCAG 59 57335979 57337494 GTCCTAGTTGTTCCTTGGGT 59 NA Rattus norvegicus 81 Olr107 ENSRNOG00000015901 ENSRNOT00000021282 1 1 1 60 1 168623739 168623757 GCGTCTATGGATTGGTCTG 58 168623779 168623799 ACTAAGATGAAGATTGCGTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Herc3 ENSRNOG00000007304 ENSRNOT00000010241,ENSRNOT00000087451 3 2 2 80 4 89165554 89165575 ATCCCACTGTGAAACTATTCTG 58 89165614 89167467 CTGTCAGGAACAAGAGAAACC 59 NA Rattus norvegicus 81 RGD1564541 ENSRNOG00000012564 ENSRNOT00000016993 2 1 1 80 X 123465960 123465979 GTAGTGAAATTTGGCCAAGG 57 123465033 123465920 GGTCATCATAACCTTCTTAGGA 57 NA Rattus norvegicus 81 Mppe1 ENSRNOG00000018648 ENSRNOT00000025164 2 1 1 81 18 62955909 62960402 GGACAAATTGCGAAGGGAG 59 62955846 62955867 AATGAAGACTACTTCTGGTTGC 59 NA Rattus norvegicus 81 Retn ENSRNOG00000001001 ENSRNOT00000091197,ENSRNOT00000001325 2 2 2 114 12 2203039 2203057 CATTGCTGGTCAGTCTCCT 59 2203383 2203401 TTGTATCCTCACGGACGTC 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_20_0031.1 ENSRNOG00000039966 ENSRNOT00000061411 1 1 1 74 20 3076643 3076661 TTCTGCTGCCTTCTTTGTC 58 3079184 3079202 AACTGTGTAGGTGGGTTCG 60 NA DesignNoJunction Rattus norvegicus 81 Sptssa ENSRNOG00000004292 ENSRNOT00000005825 3 1 1 80 6 75551467 75551488 TTCTACTACCAGTACTTGCTGG 59 75541249 75551428 AACCAGCATCGAATTGAACAC 60 NA Rattus norvegicus 81 Btg1 ENSRNOG00000004284 ENSRNOT00000005910 3 1 1 99 7 37812892 37812910 TCATCTCCAAGTTCCTCCG 59 37812972 37813787 TGTTTGTAATGCTCTGCCAG 59 NA Rattus norvegicus 81 LOC367975 ENSRNOG00000047100 ENSRNOT00000071436 2 1 1 81 X 124158481 124158499 GACCTTACACTCTTGTGCC 58 124157652 124158436 TCATGGTGGCAATTGTTGG 59 NA InUTR Rattus norvegicus 81 Lrrcc1 ENSRNOG00000010891 ENSRNOT00000014762 1 1 1 80 2 88398559 88398578 TTGAGAACTCTGGAAAGAGC 58 88397577 88398517 TTGGATCAGTCTCATCTGTG 57 NA Rattus norvegicus 81 Gng2 ENSRNOG00000048980 ENSRNOT00000071133 3 1 1 67 15 4850168 4850186 CACATGCCAAGGAAGATCC 59 4850217 4850235 CTTCTTCTCCCGAAAGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nhsl2 ENSRNOG00000037951 ENSRNOT00000076971 1 1 4 69 X 71961129 71961147 TGTAGAGGAACTGCTTCGC 60 71961180 71965810 TCTATCAAACTGCTGCCCT 59 NA DesignNoJunction Rattus norvegicus 81 Dlst ENSRNOG00000005061 ENSRNOT00000007298 1 1 1 80 6 108944258 108944278 ATGTGATTACAGTCCAGACCC 60 108944319 108944539 CATCTCCAACAGCTTTCTCC 59 NA Rattus norvegicus 81 Sync ENSRNOG00000008118 ENSRNOT00000010730 2 1 1 89 5 147483421 147495537 CTACAGTACAGGGAGCAGC 60 147495590 147495608 CTCCTTGTTCTTCTGCTGC 59 NA Rattus norvegicus 81 Chst8 ENSRNOG00000022919 ENSRNOT00000037700 1 1 1 83 1 90616322 90616340 GACCCTATAGAGCTCAGCC 59 90543564 90543989 CAAGTGGCTATCATGCTGG 59 NA Rattus norvegicus 81 RGD1565655 ENSRNOG00000049317 ENSRNOT00000074350 3 1 1 60 1 81594141 81594161 GAACTGTGTAACAATGCTGAG 58 81594012 81594120 GGGCTTTAACTGATAGGGAG 58 NA DesignNoJunction Rattus norvegicus 81 Mlycd ENSRNOG00000014522 ENSRNOT00000019923 2 1 1 83 19 52041283 52045426 AACAACATCCAGAGCATTGTG 60 52045471 52045489 GGAGTAGAAGACAGCAGCA 59 NA Rattus norvegicus 81 Cabp7 ENSRNOG00000057703 ENSRNOT00000078179 2 1 1 88 14 84970791 84971534 TAGATATGGATGGTGACGGC 59 84970722 84970740 CTTCTCTGGGATCCCTGAG 59 NA Rattus norvegicus 81 Rn60_4_1360.2 ENSRNOG00000050918 ENSRNOT00000075024 1 1 1 80 4 71276447 71277255 GTTCAGATATCAAATGGCTGG 57 71276387 71276407 CAAACTGACTAGTTCTTGCAC 58 NA Rattus norvegicus 81 Cfap53 ENSRNOG00000014585 ENSRNOT00000019573 1 1 1 80 18 70263703 70273605 TGATCATAAGAGCCAAGCCT 59 70273648 70273666 GATACTTGTGGTAGCTGCG 58 NA Rattus norvegicus 81 Vps35 ENSRNOG00000017612 ENSRNOT00000024020 2 1 1 80 19 27488308 27488329 AAAGAGCATGAGCTGTTATGTG 59 27488369 27489513 ATGGAATCTACCTGGTCCTG 59 NA Rattus norvegicus 81 Cdv3 ENSRNOG00000010186 ENSRNOT00000082097,ENSRNOT00000044956 1 2 2 86 8 111840629 111843632 CCAGTAACAGTTACAGAAACCC 59 111840564 111840582 TTTCCTTGTCGTGGTTAGC 58 NA Rattus norvegicus 81 Olr1241 ENSRNOG00000050355 ENSRNOT00000074575 3 1 1 60 4 1535627 1535647 TTACTTCTGTGACATCCCTCC 59 1535668 1535687 CTCATTGACATAGGTGCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp2r3c ENSRNOG00000023591 ENSRNOT00000082198,ENSRNOT00000033533 1 2 2 80 6 76063468 76063487 CACCATGACCAATGTCTTCC 59 76059981 76063429 AGGTAGGTCTTATAGTCCATCTC 58 NA Rattus norvegicus 81 Tmem255a ENSRNOG00000028085 ENSRNOT00000077697,ENSRNOT00000036472 3 2 2 85 X 124442861 124442881 GTGTTTATCAGCTTTGGTGTG 58 124436103 124442817 GGTTTCAAATCAATGTGTCTGG 59 NA Rattus norvegicus 81 Mphosph6 ENSRNOG00000050087 ENSRNOT00000072416 2 1 1 80 19 50362875 50367080 GCATGAAGTTCATGCAGAG 57 50362813 50362832 CATCACTGATCATCTTCCGT 58 NA Rattus norvegicus 81 LOC680646 ENSRNOG00000022450 ENSRNOT00000036337 3 1 1 81 6 58388534 58388556 GGGACTATAATGGTCATGTAGGT 59 58388595 58388640 ATCTTCACCCATAGACCTTGG 59 NA Rattus norvegicus 81 Vps4a ENSRNOG00000020351 ENSRNOT00000050612 2 1 1 80 19 39235202 39235221 AAGCCAAGAACTACGAGGAG 60 39235263 39235376 GGGCTTCATATTTGATGGCG 60 NA Rattus norvegicus 81 Alkbh5 ENSRNOG00000028341 ENSRNOT00000034006 1 1 1 80 10 46915951 46915970 GAGATCACTCACTGCATACG 58 46916010 46926513 TGCATCTAATCTTGTCTTCCTG 58 NA Rattus norvegicus 81 Six1 ENSRNOG00000022777 ENSRNOT00000034338 3 1 1 100 6 95931063 95933130 CAAGGAAAGGGAGAACACC 58 95930981 95930999 CTTCTGAGCTGGACATGAG 58 NA Rattus norvegicus 81 Wtap ENSRNOG00000019091 ENSRNOT00000025936,ENSRNOT00000079312 3 2 2 93 1 47952906 47952924 CAACAGCAGGAATCTGCAC 60 47952981 47958505 ACTGGATTTGAGTGGTGCA 60 NA Rattus norvegicus 81 Tas2r105 ENSRNOG00000005664 ENSRNOT00000007481 3 1 1 60 4 165828195 165828213 CACTTTGGAAACACAGCAG 58 165828153 165828173 GTGTTGAGATCTCTGAATCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdan1 ENSRNOG00000047427 ENSRNOT00000014664 2 1 1 80 3 112672937 112672956 TTCGAGAATGGGAAGACCAC 60 112672408 112672894 CCATCATGGCTCTGATCCT 59 NA Rattus norvegicus 81 Vom1r14 ENSRNOG00000052260 ENSRNOT00000092184 2 1 1 60 1 60281050 60281068 TTGAGTGTCTTCCAAGCCA 59 60281008 60281029 CTTTAAGACCATTAAGGCAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Casr ENSRNOG00000002265 ENSRNOT00000003092,ENSRNOT00000078341,ENSRNOT00000086097 2 3 3 80 11 67251994 67252013 CCAAGAAGGGAGAAAGACTC 58 67252056 67254315 AATTGGAGAAAGGCACCTC 58 NA Rattus norvegicus 81 Tgfb3 ENSRNOG00000009867 ENSRNOT00000013516 2 1 1 80 6 109917657 109919340 AAATTCAAAGGAGTGGACAACG 60 109917598 109917616 GTTGTGGTGATCCTTCTGC 59 NA Rattus norvegicus 81 Wbp5 ENSRNOG00000034198 ENSRNOT00000050302 3 1 1 175 X 106791472 106791965 CTTGCTTGAATTCAGCAGGT 59 106793941 106793959 CAGGCTTTGGCTCATTCTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1560556 ENSRNOG00000022791 ENSRNOT00000032743 3 1 1 80 6 78625363 78625382 AGGTACAAATCGAGGTACCC 59 78625422 78626378 CATAGATACTTGGCACAGTTGG 59 NA Rattus norvegicus 81 AABR07062108.1 ENSRNOG00000031180 ENSRNOT00000050332 1 1 1 60 4 161278132 161278151 AACTGCAAATCACCAAAGGA 58 161278091 161278109 TCATCATTGAGCCACTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Napepld ENSRNOG00000011363 ENSRNOT00000086609,ENSRNOT00000015322 2 2 2 80 4 9982182 9982200 CTCTATCCCAAACGTGCTC 58 9982244 9990350 TTGTCAAGCTCCTCTTTGG 58 NA Rattus norvegicus 81 Pramef25 ENSRNOG00000027000 ENSRNOT00000037478 3 1 1 80 5 162416674 162416692 CAGGATGATGTTGCAAGCT 59 162416131 162416631 TTAAGCTTCTGCCTTCTTGG 58 NA Rattus norvegicus 81 Zfp770 ENSRNOG00000043037 ENSRNOT00000067646 3 1 1 60 3 105661612 105661632 AGGTATGAGAGTTCAGAGTCC 58 105661572 105661590 CCTCCGATTCTTCCTTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Brms1 ENSRNOG00000047683 ENSRNOT00000072647 3 1 1 81 1 220423500 220423518 GGAGGCAGATGAGAGTGAG 59 220423562 220423686 GTCCTCGTCATCCATCTCTG 60 NA Rattus norvegicus 81 Slc5a8 ENSRNOG00000006367 ENSRNOT00000008613 2 1 1 80 7 29444720 29451767 TGGCTTTGAATCAAGTTACAGG 59 29451807 29451826 GTGTGCAGTAGAATGTGCAG 60 NA Rattus norvegicus 81 Apmap ENSRNOG00000006795 ENSRNOT00000008931,ENSRNOT00000091310,ENSRNOT00000040188 1 3 3 80 3 146390333 146396189 GAGTTTCAGCTTCAAAGAACC 58 146390273 146390292 AATAGCCTTTCTGCTTGTCG 59 NA Rattus norvegicus 81 Serf2 ENSRNOG00000015277 ENSRNOT00000056151 1 1 1 88 3 113416435 113416453 TGAAGAAGCAGAGCGACTC 60 113416505 113417153 CATGATCTCCGAGTCCCTC 59 NA InUTR Rattus norvegicus 81 Btbd17 ENSRNOG00000003109 ENSRNOT00000004191 3 1 1 92 10 103336240 103337504 GTTCATCAGGTATTTGTACTGTGG 60 103336171 103336191 GATGCTACTCGGTATTTGGTG 59 NA Rattus norvegicus 81 Nacc2 ENSRNOG00000018231 ENSRNOT00000024786,ENSRNOT00000087651 3 2 2 80 3 3541059 3541078 CCTACGATACCATGGTGGAG 60 3517149 3541016 CTGGTTTCTCTTGCACTGC 60 NA Rattus norvegicus 81 Yrdc ENSRNOG00000025424 ENSRNOT00000039870 3 1 1 84 5 142846510 142848673 TGAGTGTTGAGGAGTTCCA 58 142848721 142848739 TCAGGGCTTTCACTATCCC 59 NA Rattus norvegicus 81 Lrrc51 ENSRNOG00000020124 ENSRNOT00000027261 1 1 1 80 1 167000680 167005711 GATTCAAGATCTGATAAGCGAGG 59 167000622 167000640 TGGGTCAGTGACTTTCCTG 59 NA Rattus norvegicus 81 Zbtb25 ENSRNOG00000006441 ENSRNOT00000008424,ENSRNOT00000089594 2 2 2 86 6 99388226 99388244 CGTTTACTTCAAAGCCCAC 57 99382695 99388177 ATGCATTCACTTGTTTGGTG 58 NA Rattus norvegicus 81 Nrtn ENSRNOG00000048651 ENSRNOT00000072592 3 1 1 171 9 10305522 10305540 TGCTGTCTGTCTGGATGTG 60 10306131 10306150 GAAAGTTCTCGAAGCTCCAC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100174910 ENSRNOG00000013738 ENSRNOT00000018368,ENSRNOT00000077491 2 2 2 97 18 52036435 52036457 CCTTTGGACTCTTGAGAAATCTC 59 52032622 52032640 AAGTGTGATGTCCACCTCC 59 NA DesignNoJunction Rattus norvegicus 81 LOC690082 ENSRNOG00000047724 ENSRNOT00000023181 2 1 1 112 1 146968005 146968023 GTAACATCCAAGCCCAGGT 60 146967827 146967845 TTGGGTGAGACAGAGATGC 59 NA DesignNoJunction Rattus norvegicus 81 Obp2a ENSRNOG00000042407 ENSRNOT00000064745 2 1 1 82 3 2910102 2910120 CTTACCGTCCTGCTACTGG 60 2910165 2910710 GTCCCAGAGTAATCCTCCTG 59 NA Rattus norvegicus 81 Ank3 ENSRNOG00000053288 ENSRNOT00000082181,ENSRNOT00000090273 1 2 2 80 20 20447691 20448803 GAATGCCACAACTGATGCC 60 20448847 20448865 ATTGGTCCTTCCAGCAGAG 59 NA Rattus norvegicus 81 Rrp9 ENSRNOG00000012927 ENSRNOT00000017469 2 1 1 80 8 115185198 115185216 TTACGTGCTTGGTCATCAC 58 115185256 115186006 CTACACTCCACTTTATGATGGTG 59 NA Rattus norvegicus 81 Mrpl16 ENSRNOG00000021005 ENSRNOT00000028517 2 1 1 65 1 228142911 228143204 TTTCAGATACTTGGGCAGC 58 228143233 228143251 AAGTTGGAACTGGGAGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_5_1641.1 ENSRNOG00000051225 ENSRNOT00000076898 2 1 1 60 5 160288730 160288749 CCAAGCTCTATGTCAAGCAG 59 160288772 160288790 ATGGATTCTGGACGACCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpusd3 ENSRNOG00000009084 ENSRNOT00000068001 3 1 1 82 4 145368326 145368501 GCATTGATCTTGCAGTCCC 59 145368262 145368280 ATGGAAATGGCTGAGGGTC 60 NA Rattus norvegicus 81 AABR07022046.1 ENSRNOG00000023091 ENSRNOT00000031419 1 1 1 60 13 104156267 104156287 TTACTGCTTGAAGAGGAACCA 59 104156227 104156246 CGTCCATGATTTATCCAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC502660 ENSRNOG00000031514 ENSRNOT00000050168 1 1 1 60 3 103556967 103556988 CACTCAGATGTTCTTCATTCAC 58 103557008 103557027 CATGACTATGAGCAACACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ctla4 ENSRNOG00000054129 ENSRNOT00000091237,ENSRNOT00000088183 3 2 2 80 9 67699613 67702707 CTTCTCTGAAGCCATACAAGTG 59 67702747 67702766 TATTCACATGGAAAGCTGGC 59 NA Rattus norvegicus 81 Eif4g1 ENSRNOG00000001738 ENSRNOT00000041777,ENSRNOT00000040029 3 2 2 80 11 83913106 83913269 GAGAGCTCTTTAGGGAAATTACG 59 83913048 83913066 AGAGACCCAGGATCTCCAG 60 NA Rattus norvegicus 81 Klf7 ENSRNOG00000012961 ENSRNOT00000017901 3 1 1 83 9 70787215 70787375 ACAAGAAGAGGAGGGTCCA 60 70787150 70787168 TCTGGTGGGCCTTTAAGTG 60 NA DesignRelaxed Rattus norvegicus 81 Aqp4 ENSRNOG00000016043 ENSRNOT00000048109 2 1 4 108 18 6778976 6778994 CTTCTACATCACTGCGCAG 59 6776923 6778906 ATAATTGATCGTGGTGACTCC 58 NA Rattus norvegicus 81 Alkbh7 ENSRNOG00000047089 ENSRNOT00000072118 3 1 1 80 9 10046282 10046302 ATCTCTGGTCCATGTATTGGA 58 10046115 10046243 GTAGATCCACAGAACTTGACAC 59 NA Rattus norvegicus 81 Dusp6 ENSRNOG00000023896 ENSRNOT00000037844 1 1 1 93 7 41475914 41475933 GAGAACACAGGTGGAGAGTC 60 41475988 41476476 TACTGAAGCCACCTTCAAGG 60 NA Rattus norvegicus 81 Tas2r129 ENSRNOG00000031107 ENSRNOT00000051110 2 1 1 60 4 167024775 167024794 GAAGATGCAACAACATGCAC 59 167024734 167024753 GACTTTGATGTGAGCATTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307461 ENSRNOG00000015718 ENSRNOT00000084120 2 1 2 98 8 116094999 116095545 CGGAGAGGATTAAGTCTGC 57 116095607 116095625 AGAGGATGGGAGATCACAC 58 NA InUTR Rattus norvegicus 81 RGD1307461 ENSRNOG00000015718 ENSRNOT00000084120 3 1 2 99 8 116095000 116095547 GGAGAGGATTAAGTCTGCCC 60 116095609 116095627 GCAGAGGATGGGAGATCAC 60 NA InUTR Rattus norvegicus 81 Tmtc4 ENSRNOG00000014310 ENSRNOT00000019602,ENSRNOT00000078424 1 2 2 80 15 109364871 109376866 GTCGAGCATTTAAAGAAACAGG 58 109364812 109364832 CTCCCAGAAAGATACTCAGCA 59 NA Rattus norvegicus 81 Fam71a ENSRNOG00000029371 ENSRNOT00000043672 3 1 1 60 13 109768622 109768641 AGTCATCGGAAAGCCTACAC 60 109768581 109768600 TCTGGTCCCTTCTTGTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Med1 ENSRNOG00000005606 ENSRNOT00000067901 2 1 1 80 10 86135176 86141182 AAGTCATGGAGAAGAGGGT 58 86135114 86135133 GAGCCTTCTGTAATGTCTCC 58 NA Rattus norvegicus 81 Olr629 ENSRNOG00000047271 ENSRNOT00000044692 3 1 1 60 3 76695888 76695907 AGACCTCTGCTATACATCCA 57 76695847 76695870 CCTTTCTATGATGAGATCACTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rce1 ENSRNOG00000019468 ENSRNOT00000026454,ENSRNOT00000066455 3 2 2 151 1 219863071 219863327 CCTGCTGCTAACTATGATCC 58 219862384 219862403 TAACTTGGTTTCGTAGCCAG 58 NA Rattus norvegicus 81 AC117142.1 ENSRNOG00000052613 ENSRNOT00000078017,ENSRNOT00000090658 3 2 2 80 2 235350413 235351813 TTCATCATCCAGGCCTGTC 60 235351855 235351875 CTTGTCTGTCTGATGATCCAC 59 NA Rattus norvegicus 81 Klhl28 ENSRNOG00000004218 ENSRNOT00000005821 1 1 1 80 6 86695828 86703609 GCCTGTTTGGATAGTGTGG 59 86695766 86695787 ATAGCGAGGAATATTTAAGGGC 58 NA Rattus norvegicus 81 Klhl28 ENSRNOG00000004218 ENSRNOT00000005821 3 1 1 80 6 86695829 86703610 TGCCTGTTTGGATAGTGTG 58 86695767 86695787 TAGCGAGGAATATTTAAGGGC 58 NA Rattus norvegicus 81 Xrcc1 ENSRNOG00000019915 ENSRNOT00000027057 3 1 1 80 1 81438786 81438806 CACAGATGAGAACACAGACAG 59 81438848 81440294 TTGCCCTGGAAGAAGTCTG 60 NA Rattus norvegicus 81 RT1-M1-1-ps ENSRNOG00000061923 ENSRNOT00000088528 3 1 1 80 20 2436562 2436822 CCTGAATGAGAAATGAGATCCT 58 2436503 2436522 GCATGATAACCTGGAGAAGG 58 NA Rattus norvegicus 81 Dok2 ENSRNOG00000013922 ENSRNOT00000018725 2 1 1 85 15 52451367 52452358 AGACCTTTGGCAAGAAGTG 58 52452407 52452425 ATCCTGGAGCTCTAGTCTG 58 NA Rattus norvegicus 81 Ifngr1 ENSRNOG00000012074 ENSRNOT00000016286 1 1 1 80 1 15074394 15074414 TGACGGAAATACCTGTTACAC 58 15074453 15076891 TGTTCTGTATGTAGGATCTCCC 59 NA Rattus norvegicus 81 Nip7 ENSRNOG00000020391 ENSRNOT00000027653 3 1 1 80 19 39258151 39258758 ACGCCAAGTATAAAGTGTGGA 60 39258800 39258818 CCAGACCGGATTTCAACAC 59 NA Rattus norvegicus 81 Top3a ENSRNOG00000005099 ENSRNOT00000068351,ENSRNOT00000080083 2 2 2 80 10 46989036 46989055 TTTCAGGTTCTAAGGCAGCA 60 46987241 46988993 CTCATCCAGCTTCTTTGCC 59 NA Rattus norvegicus 81 Hoxa2 ENSRNOG00000005968 ENSRNOT00000008023 1 1 1 93 4 82133134 82133152 GATGAAGGAGAAGAAGGCG 58 82132416 82133077 TTCCAGGGATTCTTTGTGG 57 NA Rattus norvegicus 81 Sry ENSRNOG00000051574 ENSRNOT00000084732 2 1 1 60 Y 327205 327223 TGCATTTATGGTGTGGTCC 58 327246 327265 CATGCTGGGATTCTGTTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tdo2 ENSRNOG00000011612 ENSRNOT00000015732 2 1 1 82 2 180904080 180904098 GTTCCGGAAGCAGAAAGAG 59 180902914 180904035 GTCGTCGTTCACCTTTACTC 59 NA Rattus norvegicus 81 Pold1 ENSRNOG00000019681 ENSRNOT00000026797 2 1 1 80 1 100544779 100544797 TGTGAGCTTCCACTTCCTG 60 100544476 100544738 TGTTCATTCCCATTCTGTAGGT 60 NA Rattus norvegicus 81 Megf9 ENSRNOG00000005932 ENSRNOT00000007812 3 1 1 80 5 86590563 86609253 GCACCATAGAATTTGGTGC 57 86590501 86590520 CACATGTATTGCAGTTCTGG 57 NA Rattus norvegicus 81 Orc3 ENSRNOG00000008314 ENSRNOT00000084643,ENSRNOT00000011085 3 2 2 80 5 50061014 50061032 GGAGTCTAACAGAGACCCT 57 50060053 50060972 GTTTCACATCTGGACAATCCT 58 NA Rattus norvegicus 81 AABR07021239.1 ENSRNOG00000025794 ENSRNOT00000033201 1 1 1 60 13 62524468 62524487 CTCCGGTCACAAAGATACGA 60 62524427 62524447 TCATGTTCCTCAGAAACTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC502684 ENSRNOG00000023721 ENSRNOT00000055415 2 1 1 80 3 147909132 147909150 CAGACTTCTGCTGAAGACC 58 147909193 147910330 TTCAGCTGCTTGATAAGCTC 58 NA Rattus norvegicus 81 Rassf1 ENSRNOG00000021548 ENSRNOT00000037375,ENSRNOT00000037363 2 2 2 82 8 116314190 116314212 TTCATGGTAGTAGATGATCCTCG 59 116314249 116314405 GACAGTTTCCGGAAGTATATTTGG 60 NA Rattus norvegicus 81 Hoxa6 ENSRNOG00000048917 ENSRNOT00000082933,ENSRNOT00000074452,ENSRNOT00000008542 3 3 3 71 4 82262706 82262725 GTACACAAGCCCTGTTTACC 59 82261076 82261094 CCGTGACTCCCATACACAG 60 NA DesignNoJunction Rattus norvegicus 81 Myot ENSRNOG00000050004 ENSRNOT00000016511 1 1 1 80 9 37731299 37731320 GTTCTATATTACCGTCTCAGCC 58 37731358 37735371 CTGAGGATTGTTGATAGTTGGA 58 NA Rattus norvegicus 81 Ltv1 ENSRNOG00000015217 ENSRNOT00000020453 2 1 1 80 1 7325477 7325495 GCACCATTCAAGTGGACAG 59 7324628 7325435 ACTTTACACAGTTCTCTGCCT 59 NA Rattus norvegicus 81 Cd3eap ENSRNOG00000016825 ENSRNOT00000034266 3 1 1 87 1 80270665 80270683 GAAGTGTGGCTTATCCGAG 58 80269510 80269529 TAACAGTCTTGGAGCCAGAG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1566239 ENSRNOG00000019990 ENSRNOT00000063780 3 1 1 129 16 20672607 20673164 CGTCTAGACCAAGCTCACC 60 20673257 20673275 CTTCCACTGCCAGTACCTC 60 NA Rattus norvegicus 81 LOC360919 ENSRNOG00000039504 ENSRNOT00000060548 2 1 1 80 14 19059464 19059485 GCTATGAAATAGCCGTTCAGTC 60 19057375 19059425 TTCTGATGGGCTCTAACTTGG 60 NA Rattus norvegicus 81 Spg11 ENSRNOG00000021954 ENSRNOT00000080253,ENSRNOT00000022875 3 2 2 80 3 114052822 114053064 CTTCCAAGTTGATAGGTCCTG 58 114052762 114052780 CAGGAAAGCTCTGGTTCTG 58 NA Rattus norvegicus 81 Olr531 ENSRNOG00000057929 ENSRNOT00000090836 2 1 1 60 3 74544674 74544693 CTTCTGTGACATACCTCCCA 59 74544633 74544656 CAGCTCATTAATAGAAGTGTCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxo34 ENSRNOG00000011704 ENSRNOT00000092161 1 1 2 115 15 24327812 24332207 TTCTAACTGGCATCTGTTATGC 59 24332283 24332301 TTCATGCAGTTAGCTCTGC 58 NA InUTR Rattus norvegicus 81 Armc2 ENSRNOG00000026217 ENSRNOT00000031047 3 1 1 80 20 46825826 46825845 GCTGTATAAGCTAGTGGACG 58 46820079 46825785 CCACTCACTTTAAGTGCTAGG 59 NA Rattus norvegicus 81 Slc7a5 ENSRNOG00000018824 ENSRNOT00000025784 2 1 1 80 19 54699253 54699272 GATCATTCCTGTCTTCGTGG 59 54698860 54699211 ACGAAGAACAGTCTTGAGGA 59 NA Rattus norvegicus 81 Nhp2l1 ENSRNOG00000006762 ENSRNOT00000009152 2 1 1 62 7 123283119 123284470 GAAAGGAGCCAATGAAGCC 59 123283075 123283095 GCCATCACAATGAACTCAGAG 59 NA DesignNoJunction Rattus norvegicus 81 LOC688613 ENSRNOG00000043197 ENSRNOT00000064487 1 1 1 67 7 123482573 123482591 TGACAGATGCAGAGAACCC 59 123489568 123489586 AAACCAGTCCAGAAAGTGC 58 NA DesignNoJunction Rattus norvegicus 81 Apoe ENSRNOG00000018454 ENSRNOT00000080453,ENSRNOT00000041891,ENSRNOT00000091574 1 3 3 100 1 80614202 80614220 AACCGCTTCTGGGATTACC 60 80613722 80614139 ATCAGTACCGTCAGTTCCTG 59 NA Rattus norvegicus 81 Ppp1r9a ENSRNOG00000008869 ENSRNOT00000011756 1 1 1 80 4 30198534 30198553 AAGAAAGAAGCTGGAGGAGG 60 30198594 30198707 GCCTCCAAATCTCTAATCCGA 60 NA Rattus norvegicus 81 Chdh ENSRNOG00000015859 ENSRNOT00000021407 2 1 1 80 16 6106500 6106518 ATCCAGTTCCACTTCCTGC 60 6106562 6106977 CACATGTACCTGGTAGGCC 60 NA Rattus norvegicus 81 Plekhd1 ENSRNOG00000038297 ENSRNOT00000058301 3 1 1 80 6 104353864 104354197 CCATCCTAAGGGTGTCATCC 60 104354240 104354258 ATCTTCATGGCATAGGGCA 59 NA Rattus norvegicus 81 Ercc5 ENSRNOG00000022812 ENSRNOT00000076248,ENSRNOT00000059349 1 2 3 80 9 50929802 50930817 GAAACAGACCTTGGCAAAGAG 60 50930858 50930877 TTCAGAAGCTTCTCTGTGGT 59 NA Rattus norvegicus 81 Smarcal1 ENSRNOG00000016503 ENSRNOT00000071856,ENSRNOT00000022459 2 2 2 80 9 79988099 79989912 ACTACCTCTACAAGGACCCA 59 79989955 79989973 CCATGTCATTCCCATCGTC 58 NA Rattus norvegicus 81 Ltbp4 ENSRNOG00000020871 ENSRNOT00000028322,ENSRNOT00000081796 2 2 2 80 1 84136753 84136771 GAAGGGAGCTTCAAGTGTG 59 84136604 84136709 ACACTCATCCACATCCTCG 59 NA Rattus norvegicus 81 Plcb1 ENSRNOG00000004810 ENSRNOT00000051184,ENSRNOT00000006389 1 2 2 80 3 128336308 128336428 CTGCGAGAAAGAGAAGAAGG 58 128336471 128336489 TCTTTGGACTTGGCTTCTG 58 NA Rattus norvegicus 81 Plcb1 ENSRNOG00000004810 ENSRNOT00000051184,ENSRNOT00000006389 2 2 2 80 3 128336299 128336421 GAAGGAAATCTGCGAGAAAGAG 60 128336459 128336480 TTGGCTTCTGTTATCTTCTCCT 59 NA Rattus norvegicus 81 LOC688286 ENSRNOG00000045615 ENSRNOT00000071406 3 1 1 81 10 106880577 106881132 CCTCATCTCTGTGATGGGTC 60 106880515 106880533 CTCATAGACGTGGAGGTGG 59 NA Rattus norvegicus 81 Slirp ENSRNOG00000012314 ENSRNOT00000016479 2 1 1 90 6 111476884 111476902 AAAGGACTAACTGCGTTGC 59 111476956 111480920 CTCTTAGCTCACTCGATGC 58 NA Rattus norvegicus 81 LOC100361993 ENSRNOG00000022144 ENSRNOT00000003557 3 1 1 60 13 107580901 107580919 TGGGAAATTTATGCCTGCA 58 107580943 107580961 AAGTTTGGCAACCATCAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pla2g15 ENSRNOG00000019859 ENSRNOT00000026996 2 1 1 81 19 38141731 38141749 GTAGATGTGCGTGTTCCTG 59 38141794 38142046 AATAGGAACCCACGTTCCT 58 NA Rattus norvegicus 81 Snta1 ENSRNOG00000016062 ENSRNOT00000021715 1 1 1 84 3 149901781 149901799 AGATTTGTCCTCTGCCACC 60 149880955 149901739 CATATACTTAACCTCCAACACAACC 60 NA Rattus norvegicus 81 Dnase1l2 ENSRNOG00000042352 ENSRNOT00000012203 2 1 1 80 10 13814206 13814227 CTTCAATGTTCAGAGCTTTGGA 59 13814008 13814165 TAGCCAGCCAGAATCTGTG 60 NA Rattus norvegicus 81 Rpe ENSRNOG00000038085 ENSRNOT00000079912 2 1 1 81 9 73707445 73707842 GAATGGGATGAAGGTTGGC 59 73707881 73707905 CATATCTATTTGATTAGCCCATGGG 60 NA Rattus norvegicus 81 Plekhn1 ENSRNOG00000020295 ENSRNOT00000038556 2 1 1 80 5 173647276 173647455 CTGGATGAGTTCCTCTGTG 57 173647214 173647232 CACAGACACAGAGACTGAG 57 NA Rattus norvegicus 81 Apoc2 ENSRNOG00000018402 ENSRNOT00000024800 3 1 1 82 1 80589273 80589761 AGAAACTGAGGGACATGTACAG 60 80589212 80589231 GAGAGTAAGGAGCTGGTCTG 59 NA Rattus norvegicus 81 Olr625 ENSRNOG00000050217 ENSRNOT00000051292 3 1 1 60 3 76626386 76626406 TGGACATTTGCTATACCTCCT 59 76626346 76626364 CTCCTTACAAGCAGATCCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr592 ENSRNOG00000049572 ENSRNOT00000075834 1 1 1 60 3 75971437 75971457 TCTATACCATTGTGACTCCCA 58 75971477 75971497 ACTTCCTTGTTCCTAAGAGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtf2b ENSRNOG00000011135 ENSRNOT00000089648,ENSRNOT00000015032 1 2 2 80 2 248723398 248724220 GATTGGCAAGGGTACAGGA 59 248724264 248724282 GAGCTGCTCATTGTTCTCC 59 NA Rattus norvegicus 81 AABR07029933.3 ENSRNOG00000056846 ENSRNOT00000087783 3 1 1 60 10 60503715 60503738 TCTGTAGTATCACTGTTCTATGGG 59 60503678 60503702 TATTACCTGCTGGACATAAGTAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syt17 ENSRNOG00000017136 ENSRNOT00000078825,ENSRNOT00000023090 2 2 2 80 1 188035923 188061851 GCCTAGTATTCACAGTGTTCG 59 188035863 188035881 AGGAATACTGGCCGATGAC 59 NA Rattus norvegicus 81 Olr1499 ENSRNOG00000061111 ENSRNOT00000083428 3 1 1 60 10 60572936 60572956 CTTGTTTCTCAGCAACTTGTC 58 60572896 60572914 TTTGGGCATTGTGACAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Syngr2 ENSRNOG00000050547 ENSRNOT00000074225 2 1 1 91 10 106815618 106815999 CCTGCTCTTCTCAGCTCTC 60 106816054 106816072 ACACGTCATCAGGTTTGGT 60 NA Rattus norvegicus 81 Pnpt1 ENSRNOG00000003600 ENSRNOT00000004919 2 1 1 80 14 113554451 113554472 ATATTTGCACCAACACCTACTG 59 113554510 113554617 TTGTTGCTCTTGATCATCTCTG 59 NA Rattus norvegicus 81 LOC499339 ENSRNOG00000012574 ENSRNOT00000033724 3 1 1 80 1 245499089 245502823 ATTGCTAATGGCCAGTACTC 58 245499028 245499047 TATCTGCTTCACAAGCTTGG 58 NA Rattus norvegicus 81 Panx3 ENSRNOG00000031675 ENSRNOT00000042717 2 1 1 80 8 40134620 40136920 GGAGTTCTCATCAGGGTCTC 59 40134559 40134577 GAGCTGTCCACAAACACAG 59 NA Rattus norvegicus 81 Rassf6 ENSRNOG00000002866 ENSRNOT00000003836 2 1 1 80 14 19017076 19017099 CTTTACCGTATTAGTGAGATGGAC 59 19017135 19017872 GCAAGATAAATAGTCTTCCGGG 59 NA Rattus norvegicus 81 Gpr101 ENSRNOG00000027658 ENSRNOT00000033219 1 1 1 110 X 140301791 140303540 AGCAACAGATAGTGTGCAG 58 140301699 140301717 TTGAGTACTGTTGGTGCAG 58 NA InUTR Rattus norvegicus 81 Zbtb34 ENSRNOG00000032700 ENSRNOT00000051893 1 1 1 97 3 12454337 12467443 GCAATTCAAGATTACGTCTCGT 60 12454261 12454279 TAGTTGGCTCAGAACGGTG 60 NA Rattus norvegicus 81 Zbtb34 ENSRNOG00000032700 ENSRNOT00000051893 2 1 1 98 3 12454336 12467442 CAATTCAAGATTACGTCTCGTG 58 12454259 12454277 TTTAGTTGGCTCAGAACGG 58 NA Rattus norvegicus 81 Rnase9 ENSRNOG00000029516 ENSRNOT00000040616 2 1 1 65 15 27965963 27968276 ACATCCCACTTCTGTGAGC 60 27965916 27965934 GCACTTGATGACCAGAGAC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Irak2 ENSRNOG00000021817 ENSRNOT00000029819 2 1 1 80 4 145647546 145649914 CACCTCAGGAAGCTACAGAG 60 145649954 145649975 ACAGTAGGATGTTCTCCATCAG 59 NA Rattus norvegicus 81 Daam1 ENSRNOG00000004345 ENSRNOT00000005846 1 1 1 80 6 94703279 94710600 AAGACAGCAGAAAGAAGCAG 59 94710642 94710661 CCATCAATCACTGACAGCTC 59 NA Rattus norvegicus 81 Zfp518a ENSRNOG00000036592 ENSRNOT00000054717 1 1 1 161 1 260171523 260171927 CAACCTGTAATCAGGTGCA 58 260172052 260172070 TGTGTCTGTTCAAATGGCA 58 NA InUTR Rattus norvegicus 81 LOC690784 ENSRNOG00000026864 ENSRNOT00000033743,ENSRNOT00000082879 1 2 2 92 4 181346953 181347347 GAAGTTGTGGAGATAAGCCAG 59 181346881 181346899 TCTGTGTAAGTGGGAAGCG 60 NA Rattus norvegicus 81 Ggt7 ENSRNOG00000018441 ENSRNOT00000025315 2 1 1 80 3 151019370 151019686 ACCCATGATCTAGCTCATGC 60 151019309 151019327 CAACGGCAGGAAAGTTTCC 60 NA Rattus norvegicus 81 Lancl1 ENSRNOG00000013557 ENSRNOT00000075954,ENSRNOT00000018293 2 2 2 81 9 74047918 74047937 CTTTCCGAATCCTTATGCCG 59 74043708 74047874 AAACTCAGGAGTCAGCCTC 59 NA Rattus norvegicus 81 Adnp2 ENSRNOG00000053370 ENSRNOT00000078496 3 1 1 81 18 76647867 76652550 CTGCTGAAGGATCTTAAAGGC 59 76647806 76647827 GTTCCCAAAGAGAAACATCTCC 59 NA Rattus norvegicus 81 AC114343.1 ENSRNOG00000051860 ENSRNOT00000089631 3 1 1 198 15 28028954 28028972 ATGATGCAGCCAAAGACTC 58 28029134 28034118 GTCACCTAGAAAGTGCACG 59 NA InUTR Rattus norvegicus 81 Lrrc3c ENSRNOG00000031298 ENSRNOT00000039892 3 1 1 60 10 86565535 86565553 CCCTGTTAGTCACCATGGG 60 86565574 86565595 ACATAGTGGATCAGATAAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aldh3a1 ENSRNOG00000002331 ENSRNOT00000003182 3 1 1 81 10 47495706 47495973 ATGGACCAGAATCTGTACCT 58 47496017 47496035 TGATGTGGTCAAACCTCTC 57 NA Rattus norvegicus 81 Nudt1 ENSRNOG00000001260 ENSRNOT00000001700 3 1 1 85 12 16394209 16394871 GCTAAGAGGGAGCTTCTGG 60 16394142 16394162 GAGCCCACAAACTCAAATGAG 60 NA Rattus norvegicus 81 Cox18 ENSRNOG00000003052 ENSRNOT00000004074 2 1 1 80 14 19435127 19436366 TACATCCTTGCTAAGGTGGA 58 19436409 19436427 ACAGACTGCAACTTCTTGG 58 NA Rattus norvegicus 81 Olr312 ENSRNOG00000050629 ENSRNOT00000072701 1 1 1 60 1 213404426 213404445 AGTAACAGAGTTTGTGCTGG 58 213404467 213404486 TGCCAGGAACAATCTTAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdhd1 ENSRNOG00000011167 ENSRNOT00000015100 2 1 1 80 15 24048637 24050558 ACCGGGAAGTTTCTAGCAG 59 24048575 24048595 AAGGTCAAACGGATTACTCCA 60 NA Rattus norvegicus 81 Vom1r43 ENSRNOG00000032226 ENSRNOT00000048195 1 1 1 60 1 67206128 67206148 TCTCTGATGGACTGTATCTGG 59 67206088 67206109 AGAATACTCACCATGGAAACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pias2 ENSRNOG00000017493 ENSRNOT00000023886 3 1 1 80 18 73523244 73523267 CACCTTCATTAACAGACTACTCAG 59 73523304 73524870 TTTGTTCTCCTGGCAAATCTG 59 NA Rattus norvegicus 81 Ubox5 ENSRNOG00000021230 ENSRNOT00000028834 2 1 1 81 3 123140407 123141944 AATTCACTGCAACAAGGTGTC 60 123140346 123140366 GCCATGGCTTCTCTTTATGAG 59 NA Rattus norvegicus 81 AABR07068150.2 ENSRNOG00000054416 ENSRNOT00000073128 3 1 1 118 9 85968838 85985259 AGATTCTACTGCAGGTCCAG 59 85968739 85968757 GATGGAGCTCAACCTGGAG 60 NA Rattus norvegicus 81 Olr1240 ENSRNOG00000049725 ENSRNOT00000074752 2 1 1 60 4 1521767 1521787 ATTACTTCTGTGACATCCTCC 57 1521809 1521827 TCATTGACATAGGTGCTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564379 ENSRNOG00000042501 ENSRNOT00000064861 2 1 1 60 3 3592657 3592676 AGTACAACAACTTCGACGTG 59 3592616 3592634 AGAAAGCGGATAAAGCCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klri2 ENSRNOG00000057643 ENSRNOT00000078642 3 1 1 82 4 163570608 163570629 AACAGGAACTGAAAGTTCACAC 59 163569495 163570565 CAACCAGGGATCTGTTCCT 59 NA Rattus norvegicus 81 Acss2 ENSRNOG00000018755 ENSRNOT00000064013 3 1 1 80 3 151062849 151067982 CCAGATGTCCAGATCTCCT 58 151068026 151068044 CTCAAACTCATCTCCTGCC 58 NA Rattus norvegicus 81 Ctcfl ENSRNOG00000028661 ENSRNOT00000034131 3 1 1 94 3 171160050 171161027 TCAACACCCATACAGGGAC 59 171159974 171159992 TTTGTAACGTCTGTGCCTG 58 NA Rattus norvegicus 81 Phrf1 ENSRNOG00000017299 ENSRNOT00000051755,ENSRNOT00000023376 1 2 2 80 1 214247653 214247674 CCAACAACTCAGAAGAAAGGAC 60 214247714 214247963 GCAGCTTCTTCATGTACTCC 59 NA Rattus norvegicus 81 Olr808 ENSRNOG00000029299 ENSRNOT00000048987 2 1 1 60 4 72273457 72273478 TCTTACATCCAGATCATCTCCA 58 72273498 72273517 CCTTTCTCCTTCCCTCTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prrc2b ENSRNOG00000010217 ENSRNOT00000066368,ENSRNOT00000088576,ENSRNOT00000013546 2 3 3 81 3 11242357 11242375 GGTCTATGAGGGCCAACTC 60 11242419 11244365 CATAGTTAGCTGTGGGAGCT 59 NA Rattus norvegicus 81 Cisd3 ENSRNOG00000036894 ENSRNOT00000066899 1 1 2 89 10 85629292 85630166 AGAATCAGTCTTCCCTGTGC 60 85630217 85630236 GTTTCTCATCCCAACCACAC 59 NA Rattus norvegicus 81 Ccdc67 ENSRNOG00000061247 ENSRNOT00000079034,ENSRNOT00000089364 1 2 2 80 8 14115819 14117152 AGCAAAGCAACAGATCTCAG 59 14115758 14115776 AAGTCTCCCATCATTCCCT 58 NA Rattus norvegicus 81 Pkib ENSRNOG00000000811 ENSRNOT00000001075 1 1 3 104 20 40683499 40683517 ACAGGACACCATGGATGTG 60 40683585 40701724 ATCACAGAGTCTTGCTGGG 59 NA InUTR Rattus norvegicus 81 Traf5 ENSRNOG00000047957 ENSRNOT00000071698 2 1 1 80 13 110770637 110771688 AACCTGCAGGATCATGAGG 60 110770575 110770594 TCTCGGAATAGTCTGCACAC 60 NA Rattus norvegicus 81 Thra ENSRNOG00000009066 ENSRNOT00000087346,ENSRNOT00000012340 3 2 2 80 10 86677014 86677033 AAGATCACCCGGAATCAGTG 60 86677075 86677838 GTCTAGAACCAGGTCCATGG 60 NA Rattus norvegicus 81 Ccdc73 ENSRNOG00000022660 ENSRNOT00000041362 1 1 1 80 3 94868982 94869000 TCCAGCTCCTCGATTTCAG 59 94869041 94877622 CATATTGAGTCTCTGCTTCCCT 60 NA Rattus norvegicus 81 Mptx ENSRNOG00000046165 ENSRNOT00000073147 2 1 1 80 13 91773590 91776348 GTATATCACAATCAGACATGGATGG 60 91773534 91773554 GAGGTATCAGGGACACATAGG 59 NA Rattus norvegicus 81 Gatb ENSRNOG00000037655 ENSRNOT00000075823 3 1 1 80 2 184639877 184639898 CCCGTTCATTTGATTATAAGCG 58 184641314 184642995 CCGGCATAAACCTGTAGTC 58 NA Rattus norvegicus 81 Spa17 ENSRNOG00000010934 ENSRNOT00000014866 1 1 1 80 8 40071261 40071279 AAACCAGCTTTGATCCAGC 59 40069365 40071217 GTTCTGGGTCCTTGAATGC 59 NA Rattus norvegicus 81 Guk1 ENSRNOG00000002928 ENSRNOT00000003926 2 1 1 80 10 45536270 45536288 CCTGGTGATCGTCAATGAC 58 45535933 45536229 TCAGCTTTCTTGATTTCCTCAG 59 NA Rattus norvegicus 81 Peli2 ENSRNOG00000012363 ENSRNOT00000016629 2 1 1 92 15 25075942 25077623 TATATTCCTCGGCGAGAAGG 59 25077678 25077696 CTTGGGTGCATTACCAGGA 60 NA Rattus norvegicus 81 Psd3 ENSRNOG00000013884 ENSRNOT00000068629,ENSRNOT00000068177,ENSRNOT00000041994,ENSRNOT00000067886 3 4 4 80 16 23751803 23751821 TGAGAAGAAGCCGAATGTG 58 23751865 23752715 ATTTCCTCTGGACTCTGGG 58 NA Rattus norvegicus 81 LOC100911492 ENSRNOG00000048322 ENSRNOT00000074488 2 1 1 81 15 25504518 25504537 GTACCCAGACATCTTCATGC 59 25502625 25504477 ATTCTTAAACCATACCTGCACC 59 NA Rattus norvegicus 81 Olr709 ENSRNOG00000055123 ENSRNOT00000082898 3 1 1 60 3 78525730 78525748 TCACAGCTTGTATGAGCCA 59 78525688 78525708 ATGACAATCTCAGTACCACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680663 ENSRNOG00000011120 ENSRNOT00000014811,ENSRNOT00000089579 3 2 2 80 X 110733046 110733863 ATCAGAAACACTTCAGAACGC 59 110733901 110733923 CTCCCTCTTTCATGATAATGACC 59 NA Rattus norvegicus 81 Tmem11 ENSRNOG00000005377 ENSRNOT00000086206 3 1 2 86 10 47118015 47128925 GTTGGAATGGTTAGCCTGTC 59 47117948 47117967 ATACTCAAACTGGTCCTGGG 59 NA Rattus norvegicus 81 Zak ENSRNOG00000001515 ENSRNOT00000002068 3 1 1 80 3 59036723 59043305 ATTCCTACGGTGTGGTTCTC 60 59043348 59043366 GCCAAGCGACTTGTAATCC 59 NA Rattus norvegicus 81 Rccd1 ENSRNOG00000042059 ENSRNOT00000029471 2 1 1 86 1 142111268 142111286 TTGGAATGAGTCAGGGCAG 60 142110955 142111220 TCATTCAATTCTGTGGCTTCC 59 NA Rattus norvegicus 81 LOC100911282 ENSRNOG00000047274 ENSRNOT00000060298 1 1 1 80 15 29672358 29672548 AGATTTGCTGGGTGAGAGG 59 29672296 29672315 TCAGAACAGAACTGGTTCCC 60 NA Rattus norvegicus 81 Rpl35a ENSRNOG00000049536 ENSRNOT00000050438 2 1 1 111 12 7186699 7186787 AATTGAAGGTGTTTATGCCCG 60 7186608 7186627 TTTGTTTGGTTTGCCTCCAG 60 NA Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000035838,ENSRNOT00000089869,ENSRNOT00000078658,ENSRNOT00000087568,ENSRNOT00000078538 3 5 6 80 20 3305443 3306024 GATGATGGAAGACAAATCTGACC 60 3306061 3306082 GCACAATGGTCTTCATATCGAC 60 NA InUTR Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000035838,ENSRNOT00000089869,ENSRNOT00000089788,ENSRNOT00000078538 1 4 6 60 20 3306340 3306358 CCATCTTGCTACCTTCCAC 58 3306382 3306400 CTGTGGAGCAGTCATTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stard5 ENSRNOG00000025052 ENSRNOT00000015320 3 1 1 80 1 145775001 145775974 ATCAGTTCCAATGCTACCC 57 145776015 145776036 ACATGGATGGTTAAATCCTCTC 58 NA Rattus norvegicus 81 Dram1 ENSRNOG00000038916 ENSRNOT00000059487 3 1 1 80 7 28932447 28932466 AGCCTTCATCATCTCCTACG 59 28921374 28932407 GTTCCTGTGTCACTGATATAGG 58 NA Rattus norvegicus 81 Acp1 ENSRNOG00000005260 ENSRNOT00000077442,ENSRNOT00000007287 2 2 2 81 6 49837023 49837211 CCCTATTATGGCAATGACTCTG 59 49836963 49836981 TGAGTTTCTCCAGGAAGGC 59 NA Rattus norvegicus 81 Cactin ENSRNOG00000039852 ENSRNOT00000027926 1 1 1 80 7 11263779 11263798 GCATGAACCTTACACCTTCC 59 11263591 11263737 TCCATGTACACCTGGATGTC 59 NA Rattus norvegicus 81 Dhx32 ENSRNOG00000018119 ENSRNOT00000024655 2 1 1 80 1 205810527 205816359 TGAAACCATCCTGAGGTACTG 60 205810467 205810485 ACACCATAGCTACCCAGGA 60 NA Rattus norvegicus 81 Rpl32 ENSRNOG00000010746 ENSRNOT00000014493 1 1 1 80 4 147715645 147717114 GTGCAACAAATCTTACTGTGC 59 147715585 147715603 TGTGCTGCTCTTTCTACGA 59 NA Rattus norvegicus 81 Fen1 ENSRNOG00000020531 ENSRNOT00000027842 2 1 1 97 1 226253445 226255660 GTAGGAAGAAGCCATTGCT 58 226253366 226253384 ATGTCATTCTCACGGATGG 57 NA InUTR Rattus norvegicus 81 Fam124b ENSRNOG00000058883 ENSRNOT00000072054 3 1 1 118 9 90788619 90805178 AGATTCTACTGCAGGTCCAG 59 90788520 90788538 GATGGAGCTCAACCTGGAG 60 NA Rattus norvegicus 81 Clec18a ENSRNOG00000022721 ENSRNOT00000073721,ENSRNOT00000048900 1 2 2 80 19 43173798 43174096 AAGAACTTCTGGATTGGGCT 59 43174138 43174157 GGTGAAGGACTTGTGTTCTC 59 NA Rattus norvegicus 81 Dmtf1 ENSRNOG00000005908 ENSRNOT00000007948,ENSRNOT00000044810 2 2 2 80 4 21900687 21900705 GCTGACACTGACCTTAAGC 59 21900744 21901369 TATGGTAGGAGACTCTAAATCCTC 59 NA Rattus norvegicus 81 Olr27 ENSRNOG00000050559 ENSRNOT00000044676 2 1 1 60 1 150172920 150172940 CTCCTCTACATTATGAAGCCA 57 150172880 150172899 GAAACACCTAACATCAGCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029925.1 ENSRNOG00000052636 ENSRNOT00000085543 1 1 1 80 10 60231165 60235662 ATCCTCATTCTATTGGACTCCC 59 60235702 60235721 AAAGCAGAGGTCAGAGAAGG 60 NA Rattus norvegicus 81 Psmc3 ENSRNOG00000011414 ENSRNOT00000015757 1 1 1 80 3 79877525 79877543 AGGTGCTCAAGATGTCCAC 60 79877581 79877906 CTTCACTCTTCATGATCTTGATCTC 60 NA Rattus norvegicus 81 Mtmr2 ENSRNOG00000005923 ENSRNOT00000008566 3 1 1 80 8 12329505 12330998 ACAAGACAGTTCCCTACCG 59 12331039 12331060 AAATAGACAGCTGTACAAGTGG 59 NA Rattus norvegicus 81 LOC100910921 ENSRNOG00000049438 ENSRNOT00000072853 3 1 1 60 3 75167693 75167711 GTTGCCATCAAACACAGGA 59 75167651 75167673 AACTATAAGGTGGGAAGAACAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rin3 ENSRNOG00000007062 ENSRNOT00000065246,ENSRNOT00000077477 3 2 2 80 6 126271365 126271384 CTGAGATGCTCCTCAATGTG 59 126271425 126276364 TCAGATAGTAGGAACCCTCTC 58 NA Rattus norvegicus 81 Mir3102 ENSRNOG00000049574 ENSRNOT00000074461 3 1 1 64 1 165921237 165921256 ATCTATTGCGGGCTCTACTC 59 165921192 165921210 CTGTGTACCTGTGGGTAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem132b ENSRNOG00000038406 ENSRNOT00000071104 3 1 2 80 12 35971497 35971518 ACACCCTTAGACATTTATGAGC 58 35971436 35971458 TGGTTGGATGAACCAATTCTC 59 NA Rattus norvegicus 81 N4bp2l1 ENSRNOG00000059322 ENSRNOT00000085295 1 1 1 80 12 548336 549518 GAGTTAGCAAGAAGAAACATCC 58 548277 548297 GGTAACATTGTGTTCATACCG 57 NA Rattus norvegicus 81 Adamts3 ENSRNOG00000027463 ENSRNOT00000060465 1 1 1 80 14 20043442 20043465 CGATAACCCATACTTCTGTAAGAC 59 20043503 20045740 TTATAGCACCACTTCCCAGC 60 NA Rattus norvegicus 81 Adamts3 ENSRNOG00000027463 ENSRNOT00000060465 2 1 1 80 14 20037549 20037568 TATCACGATGAGTCCCTTGG 59 20037609 20039447 GCTGATAGACTTTGCGTAACC 60 NA Rattus norvegicus 81 LOC679149 ENSRNOG00000048039 ENSRNOT00000074240 1 1 1 80 19 1645 2115 CTGGCTATTAACAAGGTTGTG 57 1585 1603 CAACAACTCTTTGGGATGC 57 NA Rattus norvegicus 81 Ppp1r37 ENSRNOG00000017692 ENSRNOT00000023867 1 1 1 80 1 80444142 80444553 TTGGATGAAGATGGTGCCT 59 80444080 80444101 GTTGAAAGAGATGTTGAGGTGG 60 NA Rattus norvegicus 81 Xiap ENSRNOG00000006967 ENSRNOT00000078482,ENSRNOT00000009336,ENSRNOT00000085110 2 3 3 80 X 128446880 128446898 TGCAGATCTTGTGAGTGCT 59 128446939 128452171 TCAGTACTGATGTCTTTCTGCA 60 NA Rattus norvegicus 81 Fbxl19 ENSRNOG00000018986 ENSRNOT00000090428,ENSRNOT00000065187 2 2 2 81 1 199198674 199198697 GAGGAGAAATTTAGTTTGAGCCTC 60 199198737 199198886 CCTTTCCCATCTTCAGGCA 60 NA Rattus norvegicus 81 Nqo1 ENSRNOG00000012772 ENSRNOT00000017174 1 1 1 80 19 38431938 38431956 GAGAGTGCTTGTAGCAGGA 59 38431997 38433637 AGCAAGGTCTTCTTATTCTGGA 59 NA Rattus norvegicus 81 Emc8 ENSRNOG00000017654 ENSRNOT00000023855 3 1 1 81 19 54238987 54245487 CGCTCACCCTAATTGACTC 58 54238924 54238943 TCCTTCACACGTTCATTAGC 58 NA Rattus norvegicus 81 Spg21 ENSRNOG00000015019 ENSRNOT00000051504,ENSRNOT00000077163 1 2 2 80 8 71001649 71001667 CAGTGGAACTGCAGATGTG 59 71001708 71006488 GGATACTGCAAAGCTATAACCC 59 NA Rattus norvegicus 81 Chrac1 ENSRNOG00000009103 ENSRNOT00000012121 2 1 1 80 7 114323636 114323654 TGAAGAGCTCTCCTGAGGT 60 114323698 114325726 ACTGAACAAAGAGCTCCGT 59 NA Rattus norvegicus 81 Cyp51 ENSRNOG00000007234 ENSRNOT00000009985 2 1 1 80 4 27180745 27181765 AGAAAGCGGAGAAAGAAATGTG 60 27181804 27181824 TCCTTTCCATGTAAGCAATGG 59 NA Rattus norvegicus 81 Vcp ENSRNOG00000034242 ENSRNOT00000046102 1 1 1 80 5 58431352 58431372 GGACGTTTGGAAATTCTTCAG 58 58430812 58431310 CTCATTGGCTACCTGTTCC 58 NA Rattus norvegicus 81 AABR07017831.1 ENSRNOG00000046976 ENSRNOT00000072332 3 1 1 63 15 31618325 31618343 CTTTCAGCTCCATTTGCCT 58 31618553 31618571 ATTGAAGCCTGAGTTTGCA 58 NA DesignNoJunction Rattus norvegicus 81 Suco ENSRNOG00000026542 ENSRNOT00000075936,ENSRNOT00000087323,ENSRNOT00000036483,ENSRNOT00000084058 2 4 4 80 13 79746507 79751858 ATAGCAGAAGAGCAGGATCAG 60 79746447 79746468 AACAATCTGTGTCATGTTGGTC 60 NA Rattus norvegicus 81 LOC100362350 ENSRNOG00000007758 ENSRNOT00000029039 1 1 1 80 13 110640451 110640469 AGTTGCATTGTTTGGAGGA 58 110637164 110640407 CGAATCTCACGTCTTAGCA 57 NA Rattus norvegicus 81 Meig1 ENSRNOG00000016283 ENSRNOT00000021918,ENSRNOT00000090779 2 2 2 81 17 78826764 78829139 AAACAAGTTGCCATGGTAGAC 59 78829177 78829200 AGTAGTAGAAAGTATTGTCCCTCC 59 NA Rattus norvegicus 81 Kmo ENSRNOG00000003709 ENSRNOT00000005005 3 1 1 80 13 93703304 93703323 TATGCCATGGAACCTAACTG 57 93703366 93704203 AGATTTGTCCATGTTCGGT 57 NA Rattus norvegicus 81 Pnkd ENSRNOG00000014806 ENSRNOT00000020049,ENSRNOT00000046229 1 2 3 80 9 81628658 81628676 CTACCTCATCATCGACACC 57 81628720 81629739 TCAATAGAAGCCTGCACAG 58 NA Rattus norvegicus 81 Ankrd11 ENSRNOG00000027906 ENSRNOT00000031389 3 1 1 80 19 55716826 55717286 AAAGCTCTACTGAGAGCTCTG 59 55716766 55716786 AGTCTGTGTTATTGCCATCGA 60 NA Rattus norvegicus 81 Ctrc ENSRNOG00000013745 ENSRNOT00000081899,ENSRNOT00000018393 3 2 2 80 5 160397234 160397252 ACTGGTGGTTCATCAAGGT 59 160395330 160397190 CAGAATCTCCGTTACAGGC 58 NA Rattus norvegicus 81 Cacnb2 ENSRNOG00000018378 ENSRNOT00000066826,ENSRNOT00000031542 2 2 2 80 17 81995430 81995451 CAGGAGGAAATTCATCATCCAG 59 81995489 81999510 TGTCTATAGCAGATGATGGAGG 59 NA Rattus norvegicus 81 Lama4 ENSRNOG00000000599 ENSRNOT00000000737 1 1 1 80 20 44153079 44154108 ATTTATGACGCCGTGAGTG 58 44154151 44154170 TCTGGCTTGATTGAGAAGGT 59 NA Rattus norvegicus 81 AABR07017841.1 ENSRNOG00000048670 ENSRNOT00000072744 2 1 1 63 15 31770000 31770018 CTTTCAGCTCCATTTGCCT 58 31770227 31770246 ATTGAAGCCTGAGTTTGCAC 60 NA DesignNoJunction Rattus norvegicus 81 Fam155b ENSRNOG00000038066 ENSRNOT00000057920 3 1 1 81 X 69601807 69602216 TTTATCTGCACAGGATTGATCG 59 69602258 69602276 ACTCACAAGAGACCCACTG 59 NA Rattus norvegicus 81 Kif18a ENSRNOG00000005037 ENSRNOT00000006689,ENSRNOT00000085176 2 2 2 80 3 100389875 100389894 TAATTGGCTACATCGAGTGG 58 100389935 100393602 AGATCTTTATTGAGTCCCTCG 57 NA Rattus norvegicus 81 Clca1 ENSRNOG00000060831 ENSRNOT00000084996 2 1 1 81 2 250923585 250923604 TATGAAGGCATCGTCATTGC 59 250918693 250923543 GAGTCACCATGTCCTTTATCC 58 NA Rattus norvegicus 81 AABR07021840.1 ENSRNOG00000004127 ENSRNOT00000079763,ENSRNOT00000005467 3 2 2 80 13 94852024 94852042 GGGAAAGAGCAGAAGAGGA 59 94847322 94851982 CATGTTTGTTTCCTTTCAGCC 59 NA Rattus norvegicus 81 Gpr155 ENSRNOG00000018485 ENSRNOT00000086329,ENSRNOT00000025158 3 2 2 80 3 60086734 60088293 CTGGTCTCCTTGATCTGGT 58 60086672 60086691 GTTAGCTGTGAGCATGTGAG 59 NA Rattus norvegicus 81 LOC681182 ENSRNOG00000047077 ENSRNOT00000068118 3 1 1 81 12 20883362 20885754 GTTACACATGATCTCAGTACGAC 59 20885795 20885813 TTATGTTCTCCAGGCCAGC 60 NA Rattus norvegicus 81 Rn60_X_0740.1 ENSRNOG00000051267 ENSRNOT00000076553 3 1 1 60 X 73140984 73141002 ACTGATCCAGACAGACAGC 59 73141023 73141044 GTTTCTTCCGTACTTTGTTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gid8 ENSRNOG00000010180 ENSRNOT00000013609 1 1 1 80 3 176219830 176221044 AACTACTTAGTCACAGAGGGC 59 176221086 176221104 TAGGTCCACACTTGGTTCG 59 NA Rattus norvegicus 81 Mir6322 ENSRNOG00000047842 ENSRNOT00000072595 1 1 1 60 12 26825108 26825127 CTGTACGCATCTTTCCTGTC 59 26825067 26825085 AGGAAGACAGAGACCTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pih1d3 ENSRNOG00000054900 ENSRNOT00000087634 3 1 1 80 X 111402839 111402857 GGAATCCAGAAGAGGTTCC 57 111402898 111410403 ACACAATCTCATAATCTGGGAC 58 NA Rattus norvegicus 81 Dpp3 ENSRNOG00000031485 ENSRNOT00000026968 2 1 1 80 1 220178887 220182558 CAACACAGAACCTGCTCTC 59 220178825 220178844 GTGACCTGGAAATGATTCCC 59 NA Rattus norvegicus 81 Ptprz1 ENSRNOG00000006030 ENSRNOT00000008719 3 1 1 80 4 50138416 50139833 CACTGACATTGAGCAGTACC 59 50139875 50139894 GTGGATGGATTCTCTTCCTG 58 NA Rattus norvegicus 81 Sult1b1 ENSRNOG00000001967 ENSRNOT00000002699 1 1 1 80 14 22143138 22146484 CAAGAAGATCAGGTGTTGAACTC 60 22146519 22146542 GGAGTAGATCAATTGGAAGATGTG 59 NA Rattus norvegicus 81 Tmprss6 ENSRNOG00000000184 ENSRNOT00000000200 1 1 1 80 7 119679922 119680631 AAAGCCCAGAAGATGTTCC 58 119679860 119679878 AAAGGCGTAGATGGAACTG 58 NA Rattus norvegicus 81 Map3k19 ENSRNOG00000003952 ENSRNOT00000005244 1 1 1 80 13 44540085 44540104 CTATAGCTGCAGTCAGGGAG 60 44538945 44540045 TGTCAGAGGTAGGAAACTTGTC 60 NA Rattus norvegicus 81 Dcaf12l1 ENSRNOG00000023458 ENSRNOT00000038653 1 1 1 80 X 131342311 131342518 TTTCCCTCTATGCTGTGGG 59 131342249 131342267 ACAGTGGAGGGATGTTCTG 59 NA Rattus norvegicus 81 Olr1635 ENSRNOG00000031108 ENSRNOT00000040096 3 1 1 60 15 27549275 27549299 GACTAGGAGACTTTGTTGTATTCTG 59 27549239 27549259 GTAGCCAAGGAATCCAATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ogt ENSRNOG00000003359 ENSRNOT00000004692,ENSRNOT00000082967 2 2 2 80 X 71568344 71568760 GCTCATTGCCTACAGATTGTC 60 71568799 71568820 CTGCTCAGCTACAATACTAACC 59 NA Rattus norvegicus 81 Agfg2 ENSRNOG00000001404 ENSRNOT00000077711,ENSRNOT00000064572 3 2 2 86 12 22113071 22116200 GCAGAATGGTTCTTCCTTTGG 60 22116248 22116266 GGATTGGTGGAGATCCCAG 60 NA Rattus norvegicus 81 Gpc4 ENSRNOG00000002413 ENSRNOT00000003282 1 1 1 80 X 139359791 139359813 CTCGATTCAGACCTTATCATCCA 60 139356027 139359752 TGACATCAGTAACCAGTCGG 60 NA Rattus norvegicus 81 Syde2 ENSRNOG00000026186 ENSRNOT00000036282 3 1 1 80 2 251863713 251863731 TTTGGGCAGTTGGAAAGTG 59 251863773 251872599 AATAAGTCTGCTGTCAGTGTG 58 NA Rattus norvegicus 81 AABR07061345.3 ENSRNOG00000057968 ENSRNOT00000080096 2 1 1 60 4 117751150 117751168 CCTAGTGTCTGGTTCTTGG 57 117751108 117751126 CAGGCAAAGGAGAAAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss36 ENSRNOG00000033343 ENSRNOT00000090368,ENSRNOT00000026587 2 2 2 80 1 199394995 199395336 GTAGTCCTGGTGGTCAGTC 59 199394636 199394657 TAGGTCTTCGAATTCTCCTTGG 60 NA Rattus norvegicus 81 LOC102549447 ENSRNOG00000029567 ENSRNOT00000041894 1 1 1 80 8 107259075 107259093 CACCTACCAGTGCAAAGTG 59 107256491 107259036 CTCCCAGTGATATCAATAACTGTC 59 NA Rattus norvegicus 81 Grap ENSRNOG00000002599 ENSRNOT00000003515 2 1 1 80 10 47930709 47930727 GCCCTCTACAACTTCCAGG 60 47930767 47938080 GTCCATGTTTAGGATCTTAAGCG 60 NA Rattus norvegicus 81 Akap3 ENSRNOG00000059227 ENSRNOT00000086525,ENSRNOT00000079225 1 2 2 88 4 159417230 159425169 GAATCCAGGAGAAGCTGCT 60 159425221 159425239 ATACCTAAGCACCGACTGC 60 NA Rattus norvegicus 81 Rhox3 ENSRNOG00000040010 ENSRNOT00000041904 2 1 1 81 X 124575549 124575567 GCTTCCTCAGTGTAGAAGC 58 124572151 124573499 TTCCGAAACCATCTCTTCAC 58 NA Rattus norvegicus 81 Olr697 ENSRNOG00000029675 ENSRNOT00000046271 2 1 1 60 3 78216111 78216129 TTCTACTGCCATTGCTCCC 60 78216069 78216092 GGAGATGGTCTTTGTTTCATAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036698.1 ENSRNOG00000046702 ENSRNOT00000075665 3 1 1 81 X 586450 586468 CAAAGCTGACCAAATGGCA 59 586513 587156 ACCATGACACCTAGGTCTG 58 NA Rattus norvegicus 81 Smad7 ENSRNOG00000018359 ENSRNOT00000024831 2 1 1 96 18 71397850 71399215 GACTCTGTGAACTAGAGTCTCC 59 71404512 71404530 GAGGAAGGTACAGCGTCTG 60 NA Rattus norvegicus 81 Tmbim1 ENSRNOG00000014797 ENSRNOT00000084610 3 1 4 80 9 81575706 81575841 CTTCACCTTTGTGGAACCAG 59 81575645 81575663 GCACCCTGTACTCACTAGG 59 NA Rattus norvegicus 81 Tmbim1 ENSRNOG00000014797 ENSRNOT00000086146 1 1 4 80 9 81579494 81579689 TACCAAAGACTCAGGACTCTC 59 81579434 81579452 GCAGCAGGGTAAATGACAC 59 NA Rattus norvegicus 81 Mir872 ENSRNOG00000041219 ENSRNOT00000062972 3 1 1 62 5 113657740 113657761 GTTACTTGTTAGTTCAGGACCT 58 113657784 113657802 CAGTTAGGAGGCTACTGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Etnk1 ENSRNOG00000014856 ENSRNOT00000020042 2 1 1 80 4 177436355 177441616 GTTTGCACTGGCTTCTCAC 60 177441660 177441678 AGGAAGTCGAACTCGATCG 59 NA Rattus norvegicus 81 Serpina1f ENSRNOG00000037762 ENSRNOT00000057322 3 1 1 89 6 127566067 127566902 GACGACAATCTAATCTAAGGATGG 59 127566001 127566022 GTAGGTTCATCATTGACTCCAC 59 NA Rattus norvegicus 81 P2ry2 ENSRNOG00000019283 ENSRNOT00000026115 1 1 1 90 1 166037229 166037247 ATCCTCGTCACACCAAGAG 59 166032747 166032765 CTATTCCAGGAGTCCAGGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Lbhd1 ENSRNOG00000019701 ENSRNOT00000039991 3 1 1 96 1 225085670 225086652 CTCAAGAAACGTGCATCCA 59 225086712 225086730 TTTCTTTCTGGGCAAGTCG 58 NA Rattus norvegicus 81 Pex3 ENSRNOG00000015660 ENSRNOT00000021524 3 1 1 80 1 7698530 7698550 CTTCTAGACAATATGGCGGAG 58 7688845 7698490 ACTGGACAGACTGTTTATGGA 59 NA Rattus norvegicus 81 Kif4a ENSRNOG00000038035 ENSRNOT00000078233 3 1 1 80 X 70473954 70476565 GCATAAAGATTGTGGGACTGAC 60 70476604 70476624 AGTTGTTACCCTGCTCTAGAC 59 NA Rattus norvegicus 81 Ntf3 ENSRNOG00000019716 ENSRNOT00000082009 1 1 3 96 4 158637985 158673272 CTTCCTGAAGATCTTACAGGTG 58 158637910 158637928 ATCCATGTTGTTGCCTTGG 59 NA Rattus norvegicus 81 Txlna ENSRNOG00000048242 ENSRNOT00000072165 1 1 1 80 5 147844371 147844389 AAGTGACGAGGTTGGAGAC 59 147841838 147844330 AAAGTGATCTCCTTCCCTAGAC 59 NA Rattus norvegicus 81 Csn2 ENSRNOG00000039326 ENSRNOT00000060265 3 1 1 84 14 21974769 21974787 GCATTCACTGTGTCCTCTG 59 21975921 21976031 GTTTCACCTTCTGAAGTTTCTC 58 NA Rattus norvegicus 81 AABR07021846.1 ENSRNOG00000057677 ENSRNOT00000072611 2 1 1 60 13 95416344 95416363 CTGAAGACGATCAGACAAGG 58 95416386 95416404 AAGCTGGACAGTTGTTGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccnd2 ENSRNOG00000057710 ENSRNOT00000086440 1 1 1 80 4 159697069 159697087 TCCTATTTCAAGTGCGTGC 59 159695341 159697026 CTCACAGACCTCTAGCATCC 59 NA Rattus norvegicus 81 Mypop ENSRNOG00000014132 ENSRNOT00000019069,ENSRNOT00000078503 2 2 2 61 1 79899814 79899834 CAACGGTATGTGTTGTCAGAG 59 79899857 79908085 CTCTGGGCTGGTGTATCTG 60 NA DesignRelaxed Rattus norvegicus 81 MGC108823 ENSRNOG00000019542 ENSRNOT00000050063 2 1 1 81 18 55576276 55576295 GAGAGCTAGAGGGCTATTCC 59 55576336 55583482 CTTCAAGCAAATAAAGCCACAG 59 NA InUTR Rattus norvegicus 81 Olr1595 ENSRNOG00000022329 ENSRNOT00000004677 1 1 1 60 13 92241536 92241555 AATCCCTAAGATGCTCTCCA 58 92241575 92241596 GCAGCCAATGAAAGAAATAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csf2rb ENSRNOG00000000187 ENSRNOT00000000203 2 1 1 80 7 119565577 119565595 CCTCATCCTGGTCTTCCTC 59 119565638 119565859 TTTCTGTACAACTTGCACCC 59 NA Rattus norvegicus 81 LOC103690015 ENSRNOG00000033146 ENSRNOT00000049028 1 1 1 60 1 77541470 77541488 GTGGACACAGTCAAGTTGG 59 77541509 77541530 AGAGCCAGTTCTCATCATATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vgll4 ENSRNOG00000007822 ENSRNOT00000010338 3 1 1 89 4 146839024 146839045 GCTGTTTATGAAGATGGACCTG 60 146806750 146838976 GAAGCTTCACCTTCATAGCAC 59 NA Rattus norvegicus 81 Ush2a ENSRNOG00000003738 ENSRNOT00000004992 1 1 1 80 13 107008736 107010363 TGAGCAGTACACAGACTCC 59 107010407 107010425 AGCCCACCTACAAACAGTC 60 NA Rattus norvegicus 81 LOC100361103 ENSRNOG00000033855 ENSRNOT00000042619 2 1 1 60 4 178617685 178617704 CATCAAGCACTCAAAGAGCA 59 178617725 178617745 CTTCTGATCGTTCTCCTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Etfb ENSRNOG00000017851 ENSRNOT00000024083 1 1 1 80 1 98478771 98478792 GACTAAAGGAGAAGAAGCTGGT 60 98478323 98478730 CAGTTCGGATGGTCTCCTG 60 NA Rattus norvegicus 81 Srrd ENSRNOG00000000662 ENSRNOT00000000826 2 1 1 80 12 50319373 50320394 GAGAATGAGGAAGGCAAGC 59 50320437 50320456 GTTGTATAGAGCTGTCCCAC 58 NA Rattus norvegicus 81 Efcab7 ENSRNOG00000009782 ENSRNOT00000013089 3 1 1 80 5 118690289 118696391 CAAACTTAAAGGATTGGCAGTG 59 118696430 118696450 ACTGATGACTGACAACTTCAC 58 NA Rattus norvegicus 81 Dnase1 ENSRNOG00000006873 ENSRNOT00000009283 3 1 1 80 10 11758783 11759121 CCATACACTGAGGTCCGAG 59 11758721 11758739 GAGGGCATCGATCTCACTC 60 NA Rattus norvegicus 81 Saa4 ENSRNOG00000055531 ENSRNOT00000078692,ENSRNOT00000082289,ENSRNOT00000086856 1 3 4 80 1 102826910 102826928 CCTTCAACATTCCACTGCC 59 102825106 102826868 CAAAGCTAGAAACACTGTCCT 58 NA Rattus norvegicus 81 Tspan12 ENSRNOG00000059016 ENSRNOT00000083938 1 1 1 80 4 48879809 48879828 TGACAAATTACGGCTTACCC 58 48874317 48879766 CTCCGCAGCACTTAAACTC 59 NA Rattus norvegicus 81 Trip4 ENSRNOG00000016121 ENSRNOT00000085745,ENSRNOT00000021863 3 2 2 80 8 71490062 71492290 TATCACAGCAGACTAGATGAGAC 59 71490004 71490024 AGATCTATCAGACGTGACCAG 59 NA Rattus norvegicus 81 Bmp8a ENSRNOG00000030155 ENSRNOT00000045922 2 1 1 83 5 141019931 141033085 CTTCGTCAACATGGTGGAG 59 141019866 141019886 ATCTGGGTTAAGTCAAAGTGG 58 NA Rattus norvegicus 81 Tmprss11d ENSRNOG00000055991 ENSRNOT00000088552 2 1 1 80 14 23378818 23387265 TTCAGAAGCTACTCGAATCCT 59 23387303 23387325 TACTCTCACTCTTAACCTAGGAC 58 NA Rattus norvegicus 81 Padi2 ENSRNOG00000007574 ENSRNOT00000010183 1 1 1 80 5 159467981 159467999 GACATCATTGACCTGCCTG 59 159468042 159468433 CATGTTCACCATGTTAGGGA 58 NA Rattus norvegicus 81 Tfdp2 ENSRNOG00000011241 ENSRNOT00000081204,ENSRNOT00000015015 1 2 2 80 8 104152436 104152455 TGAAGTAGCTGATGAACTGG 57 104152496 104154705 TTCTTCTGATCATAAGCCGAG 58 NA Rattus norvegicus 81 Fam133b ENSRNOG00000009163 ENSRNOT00000012253 2 1 1 91 4 27730129 27732645 AGAGAACAACAGACAAAGCT 57 27730057 27730075 CGAGTCTGAGCTTGAACTG 58 NA Rattus norvegicus 81 AABR07017714.1 ENSRNOG00000046417 ENSRNOT00000071631 2 1 1 69 15 30323788 30323806 TTACTCCTAGGCCTTCACC 58 30323599 30323617 GTTTCACCTGTTGCTGGTC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100910824 ENSRNOG00000047036 ENSRNOT00000073693 2 1 1 60 13 100214749 100214769 ATCAGCAAAGAACAACAGTGG 60 100214790 100214809 CCAGTGTCATCTCAATCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc30a1 ENSRNOG00000052519 ENSRNOT00000013565 3 1 1 60 3 62801400 62801419 TACGGTCACTTATGAGTCCA 58 62801359 62801378 ATTCCACCCTATGATCTCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Casp12 ENSRNOG00000033434 ENSRNOT00000088553,ENSRNOT00000010243 2 2 2 80 8 2682193 2682213 TTCTAACTGTCCGAGTCTGAG 59 2682251 2682966 CAAATAGTACCAGTATGTCTGCC 59 NA Rattus norvegicus 81 AABR07003230.1 ENSRNOG00000049445 ENSRNOT00000072699 3 1 1 80 1 99399355 99399476 GTCACAAGTCACAAGTGAGAC 59 99399518 99399536 CCTTGTTGCAAGATGCCTC 60 NA Rattus norvegicus 81 Sstr3 ENSRNOG00000007332 ENSRNOT00000009612 2 1 1 113 7 119767364 119767382 AGATGCAAGCTACCCATGG 60 119764136 119767288 CAACTAGCCCAAACCTTACG 59 NA InUTR Rattus norvegicus 81 Olr427 ENSRNOG00000031763 ENSRNOT00000047764 1 1 1 60 3 21209447 21209468 ATCCTTTCATCTATAGCCTGAG 57 21209488 21209507 TCCCTTAACTTCCTCAAACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adamtsl2 ENSRNOG00000027742 ENSRNOT00000036995 1 1 1 80 3 5628800 5628818 TGTGTCTCCTTCAACTCCC 59 5628861 5629552 GATGTGCATGTAGTCATCCG 59 NA Rattus norvegicus 81 Eif3f ENSRNOG00000015221 ENSRNOT00000021017 2 1 1 80 1 173541127 173541584 CAACATCAACGACCTGCTG 60 173541625 173541646 TTTACAAGTTTCTCGTTGAGGG 59 NA Rattus norvegicus 81 Cdx4 ENSRNOG00000002974 ENSRNOT00000003973 1 1 1 63 X 74171844 74171862 AGAGCTGGCAGTTAACCTG 60 74172982 74173000 TCTGCGATTCTGAAACCAG 58 NA DesignNoJunction Rattus norvegicus 81 Serpina9 ENSRNOG00000042391 ENSRNOT00000012861 1 1 1 89 6 127663365 127664328 GGTTTCTAAGGCTGCTCAC 59 127663294 127663314 CGGACTATTAGTTTGGTGGTG 59 NA Rattus norvegicus 81 AABR07002768.1 ENSRNOG00000055096 ENSRNOT00000081294 1 1 1 72 1 83818447 83818465 AACAGTGATGCTGAAGCAC 59 83818392 83818410 TGTCCTTCTGAGGCTTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Hpse2 ENSRNOG00000043120 ENSRNOT00000067274 2 1 1 112 1 262040931 262047196 GTACAAACCACCACAACCAC 60 262040838 262040856 GAGCTTGTCCCTGAGAGTC 60 NA Rattus norvegicus 81 Ttll3 ENSRNOG00000009032 ENSRNOT00000012015 1 1 1 80 4 145350847 145351720 CAAGAAAGCCTTCATAGCAGAG 60 145351761 145351779 CTCCCTTCCAACTTCACCA 59 NA Rattus norvegicus 81 Ttll3 ENSRNOG00000009032 ENSRNOT00000012015 2 1 1 80 4 145351812 145353286 AAGAGGCCCTAGAAGATACAC 59 145353328 145353346 GAGCCTCATCCACAAAGTC 58 NA Rattus norvegicus 81 Triobp ENSRNOG00000059015 ENSRNOT00000087548,ENSRNOT00000086853 2 2 2 80 7 120214409 120214721 CTTCCAGATCCATACCAAGGA 59 120214763 120214781 AGAGCCTCAATCCAGTTCC 59 NA Rattus norvegicus 81 Serpinh1 ENSRNOG00000016831 ENSRNOT00000022983,ENSRNOT00000086091 2 2 2 80 1 164301988 164302532 ATGACCTGCAGAAACATCTG 58 164301927 164301945 CAGACATGCGCGATAAGTC 59 NA Rattus norvegicus 81 Chst4 ENSRNOG00000016953 ENSRNOT00000022749 3 1 1 100 19 41631797 41638248 TCAGAATATCGGGATGATGCT 59 41638310 41638328 TATGACCGGACATGTGGAC 59 NA InUTR Rattus norvegicus 81 Aimp2 ENSRNOG00000001044 ENSRNOT00000001379 3 1 1 87 12 12744533 12746415 GTGCTTGGAAAGGATTATGGG 59 12746463 12746482 TATGTAGCACAAGCAGGGAC 60 NA Rattus norvegicus 81 Fam76b ENSRNOG00000024863 ENSRNOT00000068445 1 1 1 80 8 12357787 12358823 GTTTGGAACACCTAAGCCT 58 12358865 12358885 GAATTTGTACAACGCTGACAC 59 NA Rattus norvegicus 81 Cluap1 ENSRNOG00000007117 ENSRNOT00000064964,ENSRNOT00000078577 2 2 2 80 10 11856988 11861850 GAACGGTTTGAAGAAGCTGAG 60 11856928 11856948 ACTCTTGAGCAGTCTCTTCTC 59 NA Rattus norvegicus 81 AABR07017838.1 ENSRNOG00000048203 ENSRNOT00000072127 2 1 1 96 15 31719898 31720034 GCTCCTCATCCTCACAAGG 60 31720088 31720112 GTTGCAGTGTATAGTAAGAATGTCC 60 NA Rattus norvegicus 81 Ndufa9 ENSRNOG00000061684 ENSRNOT00000089193 1 1 1 80 4 159393342 159395475 GCTTATCTTTCTGGAGTGGG 58 159393281 159393300 AGATTGATGACCACATTGCT 58 NA Rattus norvegicus 81 Ncl ENSRNOG00000018273 ENSRNOT00000024712 1 1 1 80 9 93376494 93376514 AGGTGGAAGAAGATAGTGAGG 59 93375241 93376452 GAGGGATGACAACCTCCTC 59 NA Rattus norvegicus 81 Eif2ak1 ENSRNOG00000001050 ENSRNOT00000001392,ENSRNOT00000079836 1 2 2 80 12 12774013 12776137 GTCCGTCAGGATCCTTGTC 60 12772487 12772506 TGAAGTCTGTGCTTCGAGAG 60 NA Rattus norvegicus 81 Trpt1 ENSRNOG00000023023 ENSRNOT00000031458 2 1 1 80 1 222253325 222253432 CACTCCCTACAAGTCCCTG 59 222253475 222253494 TGTACCATGGACTAGTGTCG 59 NA Rattus norvegicus 81 Spdl1 ENSRNOG00000007292 ENSRNOT00000009648 3 1 1 80 10 19646653 19650476 CCACAGCTGAGAATTATAACCA 58 19646594 19646612 TCAGACTCTCCAACATCCG 59 NA Rattus norvegicus 81 Uxt ENSRNOG00000009893 ENSRNOT00000013476 1 1 1 80 X 1277374 1277394 CGAGACAAGGTATATGAGCAG 58 1277434 1277591 CGAGTGATTAGTTTCCTGGAG 58 NA Rattus norvegicus 81 Zfp316 ENSRNOG00000001094 ENSRNOT00000052327 3 1 1 101 12 13354975 13354993 CTTTGGAGGAGTGGGAGAG 59 13355058 13355502 GGATTGGGTATCCCAAGGA 59 NA Rattus norvegicus 81 Mst1r ENSRNOG00000032618 ENSRNOT00000066104 1 1 1 80 8 116692183 116692556 TGAGATCACTGAGTTCCATCC 59 116692598 116692616 AGGTAGAAGTTGGAGCCAC 59 NA Rattus norvegicus 81 Bdnf ENSRNOG00000047466 ENSRNOT00000073636 2 1 8 165 3 100788154 100788172 TTTGATGAGACCGGGTTCC 60 100788301 100815574 TTCTCACCTGGTGGAACTC 59 NA Rattus norvegicus 81 Spata1 ENSRNOG00000015678 ENSRNOT00000021063 1 1 1 80 2 252336191 252341274 AATCACGAAGAAGCTGAGG 58 252336129 252336148 TGACTCTTCCAATGATCCTG 57 NA Rattus norvegicus 81 Hrct1 ENSRNOG00000039336 ENSRNOT00000060282 1 1 1 60 5 59228346 59228364 CGGCCTAGACTCTTCTACG 59 59228388 59228406 GATGGTGATGGTGAACGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cttnbp2 ENSRNOG00000061845 ENSRNOT00000087167 3 1 1 80 4 42951286 42957326 AGTCAGCAAGTTCAGAGGT 59 42951224 42951244 CTCCAGACAGAGATAACCCAG 59 NA Rattus norvegicus 81 Aplnr ENSRNOG00000009227 ENSRNOT00000012379 3 1 1 60 3 72541596 72541615 GTGACTTTGACAGCTTCCTC 59 72541638 72541656 TTGACGTAACTGATGCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr693 ENSRNOG00000006408 ENSRNOT00000008384 3 1 1 60 3 78105497 78105515 TGCTACCATTGTTGAACCA 57 78105455 78105476 TACTTCTGCATTCCTCAAACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igj ENSRNOG00000003666 ENSRNOT00000004866 3 1 1 80 14 21178886 21182302 GGAGTATCCGAATTGTTGTCC 59 21182342 21182362 ACACAAAGTTCGTTCTCACTG 59 NA Rattus norvegicus 81 Apbh ENSRNOG00000030828 ENSRNOT00000052376 1 1 2 65 1 89953328 89953346 TCAAGCAATGTGTCGACAG 59 89953375 89954142 TTTCGACCAAACTGGTTGC 59 NA DesignNoJunction Rattus norvegicus 81 Rundc3b ENSRNOG00000008463 ENSRNOT00000087657,ENSRNOT00000030224 1 2 2 80 4 22536906 22536924 AGGGAGAAGGATTGGATGG 59 22536968 22553080 TGCTGTCAGAACTTTGCTC 58 NA Rattus norvegicus 81 AABR07049184.1 ENSRNOG00000046140 ENSRNOT00000071169 2 1 1 98 5 108935617 108935638 TGGTGATAATCTAGTTGCTCTC 58 108935696 108935754 GTGTAGTAGGCGTAATGGTC 58 NA Rattus norvegicus 81 Olr441 ENSRNOG00000034115 ENSRNOT00000048581 2 1 1 60 3 72808083 72808101 ACCAGTGACTGTTACCTCC 59 72808041 72808061 GCTTACAGATTGCCACATACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gabrb2 ENSRNOG00000003680 ENSRNOT00000004970 3 1 1 80 10 28154991 28155011 TCTGATTACCATCCTCTCCTG 59 28155050 28158451 GTTGTAATTCCTAATGCAACCC 58 NA Rattus norvegicus 81 RGD1565222 ENSRNOG00000013317 ENSRNOT00000017857 2 1 1 83 15 33236151 33240018 GATGCTAAACCCAATGGCG 60 33236086 33236104 TGTTTGGCATAAGCAGGGA 60 NA Rattus norvegicus 81 Crat ENSRNOG00000018145 ENSRNOT00000065128,ENSRNOT00000086717 3 2 2 80 3 8974203 8974224 CAGTGGTGAACTTCTTAAAGTC 57 8973957 8974162 CATCCAGCTCGAAGAACTG 58 NA Rattus norvegicus 81 Mapk7 ENSRNOG00000002412 ENSRNOT00000057864 3 1 1 81 10 47772801 47772820 AAACACGACAATATCATCGC 57 47771461 47772758 GTACCACGTAGACAGATCTG 57 NA Rattus norvegicus 81 Abo2 ENSRNOG00000045801 ENSRNOT00000061276 2 1 1 83 3 5389255 5389757 TACTGACACCCACTAGGAC 58 5389190 5389208 TGTCAATGTTGAAGGTCCC 58 NA Rattus norvegicus 81 LOC689396 ENSRNOG00000032418 ENSRNOT00000041429 1 1 1 81 X 151745543 151752813 CAATGGACAGATATGACTATGTGG 59 151752853 151752871 ACAGGCATCTGTCCTTCTG 59 NA InUTR Rattus norvegicus 81 Ddx49 ENSRNOG00000022368 ENSRNOT00000004891 3 1 1 80 16 20880763 20880864 CAGGGAGTGTGAAATCAAACTG 60 20880904 20880923 TCCAGGATCATCTGTTTCCG 60 NA Rattus norvegicus 81 AABR07017768.2 ENSRNOG00000046943 ENSRNOT00000073533 1 1 1 60 15 30827327 30827439 GGGATAAACTTTCTCCTGAGAG 58 30827459 30827478 CACGAACATCAGGTTGAGTC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07017768.2 ENSRNOG00000046943 ENSRNOT00000073533 2 1 1 61 15 30827327 30827439 GGGATAAACTTTCTCCTGAGAG 58 30827461 30827479 ACACGAACATCAGGTTGAG 58 NA DesignNoJunction Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000078758 2 1 12 60 20 3359994 3360013 TTGTCCATCTCGTCTAGAGG 58 3360036 3360054 CAGTGGAATAGTCCCAGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hmgb4 ENSRNOG00000032889 ENSRNOT00000044868 2 1 1 60 5 146445643 146445664 ATTATGCGAGCAAAGTACTTCC 59 146445604 146445622 TACTGTTCTGGCATTGGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prkrip1 ENSRNOG00000001426 ENSRNOT00000001937 2 1 1 100 12 23516306 23518971 AGATGTCATGGGTTCCAGTG 60 23519034 23519052 TGGCATCCATGTAGTCCTG 59 NA Rattus norvegicus 81 Rgs10 ENSRNOG00000042592 ENSRNOT00000027375 3 1 1 80 1 199794540 199807648 GACAAGAAGCAGATGCAGG 59 199794478 199794498 CACATTGACTTGTGAAGAGGC 60 NA Rattus norvegicus 81 Atp5f1 ENSRNOG00000046299 ENSRNOT00000075083,ENSRNOT00000075982 2 2 4 91 2 208571852 208573666 GTGTAACAGGACCCTACGT 59 208571779 208571797 GGTAGAGAAGGTCTCTGGG 58 NA Rattus norvegicus 81 Atp5f1 ENSRNOG00000046299 ENSRNOT00000075932 3 1 4 100 2 208577002 208577020 ATCTTCGCAGACAATGCTG 59 208576670 208576688 GTGACACTTACCCTGGACC 60 NA DesignNoJunction Rattus norvegicus 81 Acox1 ENSRNOG00000008755 ENSRNOT00000046754,ENSRNOT00000042372 2 2 2 80 10 104726561 104726579 AGTCTGGCCAACTATGGTG 59 104726386 104726517 TCTACCAATCTGGCTGCAC 60 NA Rattus norvegicus 81 Kir3dl1 ENSRNOG00000027843 ENSRNOT00000039823 1 1 1 80 1 73308965 73314232 CTTCCTGCCAAAGATAACCTC 59 73308905 73308923 GATGACGACGATGACAAGG 58 NA Rattus norvegicus 81 Ube2q1 ENSRNOG00000020791 ENSRNOT00000028210 1 1 1 80 2 189109781 189111870 GAGATGCCCGAGGATACAG 59 189111913 189111932 ATCTTCAGACTTCTTGCCCT 59 NA Rattus norvegicus 81 Vom1r78 ENSRNOG00000057171 ENSRNOT00000080536 1 1 1 60 4 87943424 87943442 CTGTACCACCTACCTCCTG 59 87943466 87943484 CAACGAAGTTCTGGGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Morc4 ENSRNOG00000060846 ENSRNOT00000089115 3 1 1 80 X 111178568 111178587 AGACCTGATGTCTCAGTTCG 59 111176882 111178528 TCTTTGTTTCTCCGGATATTCC 58 NA Rattus norvegicus 81 Comtd1 ENSRNOG00000013968 ENSRNOT00000018897 3 1 1 80 15 2632584 2632746 TGCAGACTTTGGATGAGCT 59 2632790 2632808 AGTTCTCCTTGTCTGCGTC 60 NA Rattus norvegicus 81 Gkn2 ENSRNOG00000009256 ENSRNOT00000067651 1 1 1 80 4 119175297 119175949 AGAAGCAGACAATGAATGCC 59 119175988 119176010 CCTTTGTGATCAGAGACTTTAGG 59 NA Rattus norvegicus 81 St6gal1 ENSRNOG00000001823 ENSRNOT00000002499,ENSRNOT00000044591,ENSRNOT00000002496 3 3 3 80 11 80933912 80933930 ACAGTTTGTACACCGAAGG 58 80932607 80933870 GTTTCTGATACCACTTTGGGA 58 NA Rattus norvegicus 81 Cops8 ENSRNOG00000019635 ENSRNOT00000026581 3 1 1 80 9 97775550 97779014 TGGAAGCCCTTAGAGATGC 59 97779057 97779076 AGTCGTCTGCGATTATGGAG 60 NA Rattus norvegicus 81 Atmin ENSRNOG00000051838 ENSRNOT00000079159 3 1 1 100 7 74327028 74327048 GAGAAACCCAAACCTGTAGGA 60 74326945 74326966 ATATGACGAATGGACGCCA 59 NA DesignNoJunction Rattus norvegicus 81 Wdr35 ENSRNOG00000028783 ENSRNOT00000051970 2 1 1 80 6 34143867 34145562 GTTACTTCCAGAAATAGCCCA 58 34145604 34145622 TGGTTACACTTCAGGAACG 57 NA Rattus norvegicus 81 Racgap1 ENSRNOG00000049033 ENSRNOT00000071885 3 1 1 80 7 141279414 141279436 CAAGACTCCTTCATCAAATTCCC 60 141278315 141279376 TTGCTCTTGTTCCCAAATCTG 59 NA Rattus norvegicus 81 Hist1h2bk ENSRNOG00000055512 ENSRNOT00000089643 2 1 1 61 17 44527651 44527669 GTGCTGAAGCAAGTACACC 59 44527608 44527626 GAGTTCATGATGCCCATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stxbp1 ENSRNOG00000015420 ENSRNOT00000021178,ENSRNOT00000021189 1 2 2 80 3 11851099 11854090 GAGTCCCAGGTGTATTCCC 59 11851037 11851056 GGGATTCTTCATCTGTGCCT 60 NA Rattus norvegicus 81 AABR07017623.1 ENSRNOG00000046052 ENSRNOT00000075484 2 1 1 83 15 29345549 29345741 GATTTGCTGGGTGAGAGGA 59 29345484 29345503 CATCTCAGAGCAGGATTGGT 60 NA Rattus norvegicus 81 Zfp516 ENSRNOG00000016258 ENSRNOT00000021768 2 1 2 97 18 79846427 79846445 CAGGGAGACTTTGTCTGTG 58 79846506 79848371 TCACACTCAAACACCACTG 58 NA Rattus norvegicus 81 AABR07017868.1 ENSRNOG00000050053 ENSRNOT00000071627 2 1 1 96 15 31948067 31948203 GCTCCTCATCCTCACAAGG 60 31948257 31948281 GTTGCAGTGTATAGTAAGAATGTCC 60 NA Rattus norvegicus 81 Il34 ENSRNOG00000017602 ENSRNOT00000023823 1 1 1 80 19 40890941 40896446 TGGTTATACTGTCTTGGGATCC 59 40896486 40896505 TTTATCTTGGGCCAGAGTCC 60 NA Rattus norvegicus 81 Ccdc34 ENSRNOG00000005902 ENSRNOT00000065333 1 1 1 80 3 101156646 101156664 GAAGATGCCTGTGAGTCAG 58 101156708 101160262 CTCAACTTCACAGCTGGAG 58 NA Rattus norvegicus 81 Plod3 ENSRNOG00000001417 ENSRNOT00000001921 1 1 1 80 12 22725476 22725494 GGAAGTACAAGGACGACGA 59 22725283 22725432 GTTTGAGTTTCTCCCGCAG 59 NA Rattus norvegicus 81 Tdp1 ENSRNOG00000003831 ENSRNOT00000005167 3 1 1 80 6 123917734 123922045 AACCCAAGGAATATGGTTGAG 58 123922087 123922105 AAATGGGTGCTTGACTCTC 58 NA Rattus norvegicus 81 Ppara ENSRNOG00000021463 ENSRNOT00000030082,ENSRNOT00000078928 1 2 2 80 7 126661149 126667203 GTCATCACAGACACCCTCTC 60 126667245 126667264 GGACTCATCTGTACTGGTGG 60 NA Rattus norvegicus 81 Trem1 ENSRNOG00000022859 ENSRNOT00000049193 2 1 1 80 9 14734324 14734342 TCCACTGCTGTTGTTTCCT 60 14728261 14734282 ATTGTATGTGGAGACACTCGT 59 NA Rattus norvegicus 81 Plxna2 ENSRNOG00000007324 ENSRNOT00000009900 3 1 1 80 13 113516587 113518363 ACAGCTCGTACCAGTATGAC 59 113518403 113518424 TAATGAAGTTGCCATTCCACAC 60 NA Rattus norvegicus 81 Lcn1 ENSRNOG00000033761 ENSRNOT00000042910 3 1 1 80 3 4235003 4235292 CCAAATACACAGCCTATAGTGG 59 4235329 4235351 CATAGTAGAAGATGTAGTGGTCC 58 NA Rattus norvegicus 81 Fam129b ENSRNOG00000015845 ENSRNOT00000021689 2 1 1 80 3 11956259 11957574 GTATGAGAACAAAGTGGCCT 58 11957617 11957635 GAGGTGAGAACCTTGTAGC 58 NA Rattus norvegicus 81 LOC100910046 ENSRNOG00000018885 ENSRNOT00000032933 3 1 1 84 1 84584752 84584773 GATCACCTTACTAGAGCAGGAG 60 84584818 84592418 ACATGTCTCCAAACCTGGG 60 NA InUTR Rattus norvegicus 81 Clca4 ENSRNOG00000029889 ENSRNOT00000017943 1 1 1 80 2 250858324 250858345 AAGCTGAATACATCCACTTCAC 59 250857380 250858285 CCAACAGTCTTCCTGAATCTC 59 NA Rattus norvegicus 81 Lrrn1 ENSRNOG00000006802 ENSRNOT00000008879 2 1 1 60 4 139672194 139672212 CCACTGAATGAGCTGTACC 58 139672236 139672254 TGTCCTTGTCACTGTCACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr836 ENSRNOG00000033862 ENSRNOT00000050490 3 1 1 60 5 59265746 59265764 ACTTCACCTGTGAGATCCT 58 59265704 59265722 ACATTGATGGAGATGTCGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910637 ENSRNOG00000049190 ENSRNOT00000073447 2 1 1 60 1 169660950 169660969 ACCCTGTTGTCTATGGAGTG 59 169660986 169661010 GAAAGAATCCTTATGACACAGTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mras ENSRNOG00000014060 ENSRNOT00000050374,ENSRNOT00000077963 3 2 2 82 8 107638194 107638212 TACTCTGTCACCGACAAGG 59 107636536 107638149 AATGACTCCCTGTCCTTGAC 60 NA Rattus norvegicus 81 Olr476 ENSRNOG00000009693 ENSRNOT00000012848 3 1 1 60 3 73400262 73400280 CCATTCCCTTGACACAGAC 58 73400220 73400240 GAGCATGGGTATAACAATCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103689943 ENSRNOG00000002314 ENSRNOT00000075870,ENSRNOT00000077828,ENSRNOT00000087156 1 3 3 83 10 58798 63035 GTTGTAAAGGTTGCTGATATGG 58 63079 63097 CAACTGAACAGTGAGAGGC 59 NA Rattus norvegicus 81 Phka1 ENSRNOG00000003063 ENSRNOT00000076235 2 1 3 60 X 72509922 72509940 GAAGGCTCGGAACTCTGAG 60 72509880 72509898 CTACTTGTAGCAGGGTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911147 ENSRNOG00000042719 ENSRNOT00000045085 1 1 1 80 1 71629613 71629892 GGTCATGGCTTTCAAGATCAG 59 71629933 71629952 GGAATGACCAAGTTAGGTGC 59 NA Rattus norvegicus 81 Mcat ENSRNOG00000010539 ENSRNOT00000013994 3 1 1 99 7 124420273 124420292 TCATCGAGAACTGTGTTGCT 60 124416636 124420211 ACTGCATACAGACCTTCCG 60 NA Rattus norvegicus 81 LOC100910670 ENSRNOG00000047359 ENSRNOT00000073194 3 1 1 60 1 169669835 169669855 GCTTTGCTCAGATGTATACCA 58 169669874 169669895 CAGACAAAGATACCTGACTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042039.1 ENSRNOG00000032088 ENSRNOT00000047160 2 1 1 85 X 146403236 146403254 GAAGGGCTCCTGGATTCAG 60 146401564 146403191 GGTGCTTAGAGTTTCCATTAGTC 59 NA Rattus norvegicus 81 Abcf1 ENSRNOG00000000799 ENSRNOT00000001049,ENSRNOT00000081403 1 2 3 80 20 3316004 3316188 GAATCGCATCAATAAGGCCG 60 3316229 3316249 TTCCCTTTCGATTTCTCCTCC 60 NA Rattus norvegicus 81 Xpnpep1 ENSRNOG00000012084 ENSRNOT00000088016,ENSRNOT00000033148 1 2 2 80 1 273717501 273717519 TCCCTGAGACGAATAGGAC 58 273716183 273717460 CTGTAGTTCCATCCTTGTACTG 58 NA Rattus norvegicus 81 Mmp13 ENSRNOG00000008478 ENSRNOT00000011507 2 1 1 82 8 5524483 5524501 TTTCCTCCTGGACCAAACC 60 5524546 5526516 AAGTTGTAGCCTTTGGAGCT 60 NA Rattus norvegicus 81 RGD1560831 ENSRNOG00000007605 ENSRNOT00000009988 1 1 1 60 3 52998547 52998565 TGGCTGAAGATGGCTACTC 59 52998505 52998524 ATGATTTCTGTTCTGGTCGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serac1 ENSRNOG00000017889 ENSRNOT00000060527 1 1 1 80 1 46959174 46960490 GCACTCAGAGATACCTTCAC 58 46959113 46959132 TGAAGCTGGTAGAGTCTCTG 59 NA Rattus norvegicus 81 Ap1s1 ENSRNOG00000001415 ENSRNOT00000001918 1 1 1 90 12 22668218 22669234 TGTCTATAAGAGATATGCCAGTCTC 60 22669282 22669300 GTATCGGTGGATCAGCTCC 60 NA Rattus norvegicus 81 Wdr76 ENSRNOG00000022491 ENSRNOT00000036209 2 1 1 80 3 113468686 113471568 CTGTGTTTGAAGAGGTGTACAG 59 113471608 113471627 CTAGCAGAGTAGAGGCATCG 60 NA Rattus norvegicus 81 Wdr76 ENSRNOG00000022491 ENSRNOT00000036209 3 1 1 80 3 113457417 113463234 CCTGAATCAAAGAGAAAGAGGC 59 113463274 113463293 GTCTACTTTCAACAACCGCA 59 NA Rattus norvegicus 81 Kifc2 ENSRNOG00000060123 ENSRNOT00000085152 1 1 1 80 7 117724239 117724365 CCTCCACTCTAGATGGCTC 59 117724409 117724427 TCTCATCCCTTGGTACCTC 58 NA Rattus norvegicus 81 Atp6v0e2 ENSRNOG00000008218 ENSRNOT00000010853 2 1 1 80 4 78169680 78170243 GCTGTTACCTCTTCTGGCT 59 78170285 78170305 AGATGGTCTCATTCTTCAGCT 59 NA Rattus norvegicus 81 Smad2 ENSRNOG00000018140 ENSRNOT00000046847,ENSRNOT00000092173,ENSRNOT00000089468 3 3 3 80 18 72595257 72597867 CAGAGTAATTACATCCCAGAAACAC 60 72597904 72597923 TTGGTTCAACTGTTGGTCAC 59 NA Rattus norvegicus 81 Krtcap2 ENSRNOG00000020542 ENSRNOT00000076458,ENSRNOT00000027867 2 2 2 80 2 188562603 188564538 AAATCTTCCCTGAGATTCTCCT 59 188564579 188564597 AAGTGGTGACACAGACTCG 60 NA Rattus norvegicus 81 Rn60_10_0631.1 ENSRNOG00000043259 ENSRNOT00000065209 3 1 1 60 10 63320435 63320453 GACCTTCAACCAAGTGGAG 58 63320474 63320495 GGAGAACTTACCTAGGTAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pzp ENSRNOG00000006709 ENSRNOT00000009467 1 1 1 80 4 161848518 161849536 GCTCTTTCACGATCTCAAGG 59 161848457 161848475 TTATGAAGTGGTGCGTTGG 59 NA Rattus norvegicus 81 AABR07004891.1 ENSRNOG00000033196 ENSRNOT00000025728 2 1 1 87 1 166187030 166189686 GTAAACAGGAGAAGGAGAAAGAG 59 166186965 166186983 TCTTCCTCCTCTTCCTCCT 59 NA Rattus norvegicus 81 AABR07049408.1 ENSRNOG00000023286 ENSRNOT00000057697 1 1 1 80 5 120960248 120960267 CTAGACGGAGACCATATCCA 58 120960309 120960341 CAGTTGTCCAAGGTATCCTG 58 NA Rattus norvegicus 81 AABR07049408.1 ENSRNOG00000023286 ENSRNOT00000057697 3 1 1 80 5 120952048 120957749 ACACAGCAATTCAGTGTCC 58 120960218 120960241 CAGGATCTGTATGACAGTATAGAC 58 NA Rattus norvegicus 81 Lrp10 ENSRNOG00000011592 ENSRNOT00000015468 3 1 1 80 15 33113707 33113726 TATGGACAGCTTATTGCCCA 59 33113768 33113878 CAGCACAGAGTTGTCATTGG 60 NA Rattus norvegicus 81 Haus4 ENSRNOG00000039284 ENSRNOT00000016401 3 1 1 80 15 33182795 33183105 TGATCCTCAAGATGAGGATGG 59 33182735 33182753 TGAGGCGATGTACTTCCAC 60 NA Rattus norvegicus 81 Olr744 ENSRNOG00000028267 ENSRNOT00000032617 3 1 1 60 3 79165508 79165526 TCTTCCTCAGCTCCTTGTC 59 79165466 79165486 AACTTAGGGACGACAGTAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akap14 ENSRNOG00000006899 ENSRNOT00000009123 1 1 1 80 X 123783572 123783592 GAGGATGAATGAGATAGCTCG 58 123783421 123783530 GGATTTCTGGCTTCTTCCA 57 NA Rattus norvegicus 81 LOC690435 ENSRNOG00000029253 ENSRNOT00000046749 3 1 1 80 6 128114783 128117532 CTTGGCAACTAGACAGGGA 59 128114721 128114741 AAAGGCTTGTGTTTACTGAGC 60 NA Rattus norvegicus 81 Fubp1 ENSRNOG00000043370 ENSRNOT00000066199 3 1 1 80 2 257435379 257435398 CGATCAAGGTGGTTTCAGAG 59 257435439 257435682 GGAATTGGGACATCTATCCCT 59 NA Rattus norvegicus 81 Gabra4 ENSRNOG00000002336 ENSRNOT00000003191 1 1 1 80 14 39169684 39172224 TGGGAGTTATGCATATCCCA 58 39172267 39172285 TCCTTTGGTACCTCCACTG 59 NA Rattus norvegicus 81 Aqp11 ENSRNOG00000013358 ENSRNOT00000018091 1 1 1 80 1 162703711 162705923 CTCCTTCTCTAGGCGTACTG 59 162703650 162703671 TGTTACTCAGTTGGTTGTTGTG 59 NA Rattus norvegicus 81 Fetub ENSRNOG00000001806 ENSRNOT00000048739 2 1 1 90 11 81655077 81656661 ATGAGACTGTTCATGGACAG 57 81655006 81655027 CGAAGTGTACAGTTATAAGCAG 57 NA Rattus norvegicus 81 Upk3bl ENSRNOG00000038896 ENSRNOT00000059451 3 1 1 80 12 23658263 23658282 AATGACAACAATTGCTCCGT 59 23657540 23658222 CAGGAATTTCACTCTGTAGGG 58 NA Rattus norvegicus 81 RT1-T24-4 ENSRNOG00000042905 ENSRNOT00000047439 2 1 1 81 20 3196335 3196353 GCTGTGGCCATTATTGGAG 59 3196397 3196593 CTTTCCCACCTGTGTTTCTC 59 NA Rattus norvegicus 81 AABR07072262.1 ENSRNOG00000060328 ENSRNOT00000075455 3 1 1 80 11 85561517 85561661 TTCTTCATCACTTAACAGGGTC 58 85561702 85561720 CTGTGCTTCCTAGAGACGT 59 NA Rattus norvegicus 81 Rnf114 ENSRNOG00000060821 ENSRNOT00000086459 2 1 1 80 3 164256356 164256378 TACCAGAGTTACATCATGGAAGG 60 164256415 164256641 GTATCGGTTTGGGACATTTCTC 60 NA Rattus norvegicus 81 LOC100125364 ENSRNOG00000015597 ENSRNOT00000020889 2 1 1 255 1 56949712 56949730 GACTACACTACTTCCGGGC 60 56950130 56950149 GATGCCAGGATCATCAACAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 AABR07051533.1 ENSRNOG00000038274 ENSRNOT00000045492 2 1 1 60 3 16495785 16495805 GTCTTCATATTCCTGCTGCTC 59 16496011 16496029 ACTGGGTCATCACAGTGTC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07016863.2 ENSRNOG00000060401 ENSRNOT00000048713 3 1 1 123 15 2528904 2528922 CTGTAATCTCCGTGAGCGA 59 2529009 2531764 TTGATGCTGTTTCTGGCTC 59 NA InUTR Rattus norvegicus 81 Ip6k1 ENSRNOG00000019932 ENSRNOT00000041402 3 1 1 80 8 116804931 116811279 ATACAAAGGTGTGGTTTCTGTC 59 116811319 116811338 CTCTCCACATAAGGGTAGGC 59 NA Rattus norvegicus 81 Arhgap44 ENSRNOG00000003603 ENSRNOT00000004829,ENSRNOT00000071595 1 2 2 80 10 51532478 51532497 CTTATCTCCGAGAGTTGCCA 59 51527176 51532437 GCTCCTGGATATTAGAAGCCT 59 NA Rattus norvegicus 81 Nod1 ENSRNOG00000010629 ENSRNOT00000088085,ENSRNOT00000014324 1 2 2 80 4 85137764 85141234 CTCACGGTTATCAGACTCAG 58 85137703 85137723 TTTGTACTTGGTCAGTTCCTC 58 NA Rattus norvegicus 81 Rnase13 ENSRNOG00000039500 ENSRNOT00000060539 3 1 1 60 15 28323228 28323246 TACAGCGAGAGCTTCTGTG 60 28323186 28323205 GGAAGGAGTTCTGAGTGAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspan9 ENSRNOG00000051620 ENSRNOT00000089199,ENSRNOT00000090725 2 2 2 80 4 160536060 160536078 ATCGTCCTGTTGATCATCC 57 160535755 160536016 ATTCTCGTTCACCTTGTCC 58 NA Rattus norvegicus 81 Adrb2 ENSRNOG00000019217 ENSRNOT00000026098 3 1 1 60 18 57514965 57514984 GTCTATTCCAGGGTCTTCCA 59 57514924 57514945 CCTCGGATTTGTCTATCTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362909 ENSRNOG00000028279 ENSRNOT00000055889 2 1 1 88 4 161700822 161705401 ACCAAACTTCAAGAAGTCCCA 60 161705451 161705469 TATTGGGAAGTGGGTTGGG 59 NA Rattus norvegicus 81 Spred1 ENSRNOG00000005209 ENSRNOT00000007028 1 1 1 82 3 108846986 108850932 GATTTACAAACAACTGAGGAGG 57 108850974 108850993 TCACAGGTAACAACTGTCTC 57 NA Rattus norvegicus 81 Srd5a3 ENSRNOG00000002216 ENSRNOT00000090595 1 1 3 80 14 34557028 34557979 GAGAAATAAGAAAGGTGTGGTC 57 34556969 34556989 TTAGCAGAAGACACATACTCG 58 NA Rattus norvegicus 81 RGD1564552 ENSRNOG00000045917 ENSRNOT00000050803 1 1 1 60 17 84704944 84704965 CACATGCGAATCTACAAGAAGG 60 84704905 84704923 TTTGAACAGTGCCCATTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1291 ENSRNOG00000052671 ENSRNOT00000083163 2 1 1 60 15 35629953 35629974 GACAGAGAAGAACATCATCTCC 58 35629993 35630013 AGTGATGAAGAAGTAGAGCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 St5 ENSRNOG00000013934 ENSRNOT00000064902 2 1 1 80 1 174151689 174152303 TCAGAATACAGCAGTGAAACCT 60 174151630 174151648 TAAGCGCCTACAATAGCCA 59 NA Rattus norvegicus 81 Rnf146 ENSRNOG00000011588 ENSRNOT00000015421 3 1 1 80 1 30866699 30872095 GGATCTGTGATGGAAATGATGG 59 30872134 30872154 ACTCGCCTTCTTATTGGTAGG 60 NA InUTR Rattus norvegicus 81 Kcnh3 ENSRNOG00000057315 ENSRNOT00000086611 1 1 1 81 7 140896965 140897077 AAGGTCAATGTGTACGTTGG 59 140897120 140897139 GGTCCAGTCTTGGTAGTAGG 59 NA Rattus norvegicus 81 Col17a1 ENSRNOG00000012110 ENSRNOT00000016645,ENSRNOT00000084851 1 2 2 80 1 267420025 267420265 CCTTACAAGTCCTGATGTCC 58 267419964 267419982 TTGTAGTCTCCAGGTGGTC 58 NA Rattus norvegicus 81 Arhgap35 ENSRNOG00000015852 ENSRNOT00000090519,ENSRNOT00000021223 1 2 2 80 1 78518363 78518384 CCTTATGAAACAGATGAGGACC 59 78505955 78518323 TTTGGGCTTTGGTTTCTTGG 60 NA Rattus norvegicus 81 Katnbl1 ENSRNOG00000005814 ENSRNOT00000007688 2 1 1 80 3 103902964 103902984 TGAATGGATTATGGGAACAGG 58 103903026 103905863 AAGCATCTACGTCCTTAGC 57 NA Rattus norvegicus 81 Fgf6 ENSRNOG00000053662 ENSRNOT00000081426 1 1 1 100 4 159564056 159564074 AGACTCTACTGCAACGTGG 60 159564138 159565198 ATTTCCAGCAGGCTGTAGG 60 NA Rattus norvegicus 81 AABR07055446.1 ENSRNOG00000050691 ENSRNOT00000074535 1 1 1 190 7 3631079 3631097 AATCGTGTGGAAACAACCG 59 3631448 3631470 GTATTAGATTCTTCTGGGACCTC 58 NA DesignNoJunction Rattus norvegicus 81 Myl1 ENSRNOG00000013262 ENSRNOT00000017838,ENSRNOT00000018097 1 2 2 100 9 73940551 73943411 CTAGCAATGAAGAGATGAATGC 58 73940472 73940490 ATCTTCATAGCCTCCCTGG 58 NA Rattus norvegicus 81 Myl1 ENSRNOG00000013262 ENSRNOT00000017838,ENSRNOT00000018097 2 2 2 102 9 73940551 73943411 CTAGCAATGAAGAGATGAATGC 58 73940470 73940489 AAATCTTCATAGCCTCCCTG 57 NA Rattus norvegicus 81 Rn60_X_0707.2 ENSRNOG00000051133 ENSRNOT00000076093 1 1 1 126 X 69786780 69786801 TGTCTTCTCACAAGACTTTCAG 58 69786675 69786697 GTCTTCTCTTAGAGTTGTACCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrtm3 ENSRNOG00000026466 ENSRNOT00000033980,ENSRNOT00000081254 2 2 2 100 20 25990832 25990853 CGACCTTTGAACAATACAAAGG 58 25991237 25991257 GCATAGTCAGTAAGACAGTGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mir541 ENSRNOG00000036486 ENSRNOT00000054594 2 1 1 60 6 133892667 133892687 GAAGGGATTCTGATGTTGGTC 59 133892709 133892727 GATTCTGTGTTCGCCACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Alg12 ENSRNOG00000004591 ENSRNOT00000065848 2 1 1 80 7 129799601 129799701 CACCTCAGACAGATGTCCT 58 129799539 129799559 CATCGTTGACCTGTAGAAACC 59 NA Rattus norvegicus 81 LOC100909605 ENSRNOG00000029949 ENSRNOT00000044152 2 1 1 85 6 129056980 129057000 CATTAGGGAAGTCTTCTCCCA 59 129057046 129057967 CCTTGTGGACTACCTGAGAG 59 NA Rattus norvegicus 81 Dab1 ENSRNOG00000007410 ENSRNOT00000082021,ENSRNOT00000009977 1 2 2 80 5 124021425 124143314 GAAGAAAGGTCAGGATCGC 58 124143358 124143376 ATCAGCTTGGCTTTGTACC 58 NA Rattus norvegicus 81 Chrm3 ENSRNOG00000049410 ENSRNOT00000075651 1 1 1 60 17 63993610 63993628 TAGACCACTCACCTACCGA 59 63993568 63993586 CAGACCAATCATCACACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aard ENSRNOG00000004708 ENSRNOT00000006257 1 1 1 60 7 91592475 91592493 GAAGAGACAGGACCAGGAG 59 91592517 91592535 ATTCATCTCCTCGTCTTGC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Txk ENSRNOG00000025925 ENSRNOT00000035623 2 1 1 80 14 38045599 38046238 AAAGTCAATCCAGCAGAGGT 59 38046279 38046299 TCTCTTCTGTAAACTCCTGCG 60 NA Rattus norvegicus 81 Aprt ENSRNOG00000014405 ENSRNOT00000064180 3 1 1 80 19 55387614 55387826 TAGAGTATGGGAAGGCTGAG 58 55387553 55387572 GGAGATCATCCACAATGACC 58 NA Rattus norvegicus 81 Adgrl4 ENSRNOG00000033940 ENSRNOT00000047564,ENSRNOT00000088437 2 2 2 80 2 256680123 256680142 GTGGAAGGTTATCAGACCTC 57 256680185 256682939 GCACTCGTCTACATCTTGG 58 NA Rattus norvegicus 81 Olr10 ENSRNOG00000046729 ENSRNOT00000047255 2 1 1 60 X 95344847 95344866 CAGTGACTCAGTTCATCCTC 58 95344889 95344907 AAGAGTGGATAGCGTACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sphk1 ENSRNOG00000010626 ENSRNOT00000032163,ENSRNOT00000088457,ENSRNOT00000079080,ENSRNOT00000083593 2 4 4 95 10 105503087 105503354 GAACTACTATGCTGGGCAC 58 105503413 105503431 AGATTCATGGGTGACAGCT 59 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000020656 ENSRNOT00000028039,ENSRNOT00000090164,ENSRNOT00000091573 2 3 3 80 8 117773123 117773146 GTTGTAAAGTGGAGTCCATATTCC 60 117773180 117774814 TGGATATGTCTACATTCTGAGGTC 60 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076598,ENSRNOT00000076089,ENSRNOT00000010015 3 5 5 82 10 70163838 70163856 GAGAAGTGGGAGCTGATGG 60 70162262 70163794 TCTTCATTACCAGACACCAGG 60 NA Rattus norvegicus 81 Mir3548 ENSRNOG00000035650 ENSRNOT00000053773 1 1 1 60 5 173489411 173489430 CAAGAAATCCAGCACTGTCC 59 173489452 173489471 TTCCTACCAAAGCATACCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spg7 ENSRNOG00000015150 ENSRNOT00000047754,ENSRNOT00000091712 2 2 2 80 19 55907910 55907929 GTGGTTGCTTTCCATGAGTC 60 55907970 55909739 TATGGAGACCTTCATCACAGC 60 NA Rattus norvegicus 81 Rn60_X_0773.3 ENSRNOG00000027972 ENSRNOT00000033532 2 1 1 60 X 77259203 77259222 ATCTAAGAAGATTGACCGCC 58 77259162 77259182 CACATTCCCTTTGACCTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc148 ENSRNOG00000057740 ENSRNOT00000091777,ENSRNOT00000086371 1 2 2 80 3 45111143 45111164 CCTTTGAAAGACTTCATCAGGA 58 45111007 45111104 AAGAGTGACCTAGTAACTCCA 58 NA Rattus norvegicus 81 Terf2 ENSRNOG00000020435 ENSRNOT00000027695 1 1 1 80 19 39281130 39281149 CCTTATCAGCATCACCATCC 58 39276959 39281087 TGTCTTTCGATGCTTTGGG 59 NA Rattus norvegicus 81 Tekt5 ENSRNOG00000002571 ENSRNOT00000003465 2 1 1 80 10 5362545 5365656 TCCAGATTAGAGATAATCGGGA 58 5365694 5365715 CATCAATATACTGTGAGGAGCT 58 NA Rattus norvegicus 81 Olr155 ENSRNOG00000017234 ENSRNOT00000023147 3 1 1 60 1 169590362 169590381 GGGATGGAAGACAAACACAG 59 169590402 169590422 CGGTGATTAAGTACATGGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910597 ENSRNOG00000050668 ENSRNOT00000074466 1 1 1 60 1 169637226 169637246 GCTCAGATGTATGCCATTCAC 60 169637267 169637286 CCATGCAGAGGAAGATACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrpl47 ENSRNOG00000011639 ENSRNOT00000015864 1 1 1 84 2 119136787 119136806 CACGTTGTCAAGGAAAGGAC 60 119136251 119136742 CCATGAAGCTCCAGATTTGAC 59 NA Rattus norvegicus 81 Mylk ENSRNOG00000002215 ENSRNOT00000085618,ENSRNOT00000067060 1 2 2 80 11 69018517 69019951 CTAGAGTCTGAAGAAGATGTCTCC 60 69018460 69018481 AGAGAAGTAGGGCTTTACATGG 60 NA Rattus norvegicus 81 Sgms1 ENSRNOG00000012536 ENSRNOT00000087588,ENSRNOT00000079227,ENSRNOT00000054761,ENSRNOT00000079942 1 4 4 80 1 250692825 250693531 AATCAGCAAGTGCTGAAGG 59 250692763 250692784 TTCAAAGTACTGAAATGGCCTG 59 NA Rattus norvegicus 81 Ankrd9 ENSRNOG00000008056 ENSRNOT00000010610 1 1 1 80 6 135412210 135412230 CACCTCTGTAACCCAATTACC 58 135411813 135412168 ATCAGGAATGAGCTCCTGG 59 NA InUTR Rattus norvegicus 81 Dach1 ENSRNOG00000008834 ENSRNOT00000011926 1 1 1 80 15 82139511 82143225 AAGAACAGAGCCATAGTCCA 59 82139450 82139471 CTCAAATTCTAGTGCTTCTTGC 58 NA Rattus norvegicus 81 Vom1r24 ENSRNOG00000048370 ENSRNOT00000043828 1 1 1 60 1 68670721 68670741 TCCAGTACATCCATGATTGTC 58 68670763 68670781 TGTGAATGTGTTGAACCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050637.1 ENSRNOG00000048616 ENSRNOT00000075354 3 1 1 60 5 171825999 171826018 CTACGAGAAAGACCCAGTCC 60 171826036 171826059 GTTACCTTCTGTGTAATCATCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pot1 ENSRNOG00000019986 ENSRNOT00000060459,ENSRNOT00000079130,ENSRNOT00000080575 2 3 3 80 4 51914437 51917440 CTTCCATAGGCTGAAGATCC 58 51914376 51914394 TCAAATGTCAAAGACGCGA 58 NA Rattus norvegicus 81 AABR07049524.1 ENSRNOG00000022150 ENSRNOT00000030319 1 1 1 94 5 125862756 125862774 CTGCAAACTCAGCCTTCTG 59 125862664 125862682 TTTGAACCTTGGGCTTTGG 59 NA DesignNoJunction Rattus norvegicus 81 Zfp422 ENSRNOG00000013379 ENSRNOT00000018050 3 1 1 230 4 148761417 148761435 TCTCCGCCTCTTCCTAGAG 60 148759398 148759418 CTTGCACTTCGAGAAATACCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cdrt4 ENSRNOG00000003294 ENSRNOT00000004392 2 1 1 85 10 49368351 49399759 ACTACTCAGTAAGACTCACGG 59 49399806 49399824 AAATGTGACATAGGCTGGC 58 NA Rattus norvegicus 81 LOC100912339 ENSRNOG00000050082 ENSRNOT00000072310 3 1 1 60 3 72974597 72974615 GGCAACTGAATGCTTTCTC 57 72974638 72974657 CTTACAGATGGCTGCATACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r32 ENSRNOG00000048505 ENSRNOT00000044754 1 1 1 60 1 71844709 71844728 GTTTGTCACTCTTGTTCCTG 57 71844751 71844769 ATCTGGGACACTTCCTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sult5a1 ENSRNOG00000015695 ENSRNOT00000051452 2 1 1 88 19 55966970 55966988 ACCCTAGAGTCCCTGAAGG 60 55957801 55966919 CAGGTGGTACCTGACTTAGG 59 NA Rattus norvegicus 81 Txndc8 ENSRNOG00000029073 ENSRNOT00000042788 3 1 1 86 5 75114554 75114572 GGAAATAGGCTTGTGGTGG 59 75106921 75114506 TAAAGACATTGCCTGGAAAGC 59 NA Rattus norvegicus 81 Cryba1 ENSRNOG00000008700 ENSRNOT00000011608 2 1 1 82 10 65166729 65167231 AGATACAGTGTGGAGCTTGG 60 65167276 65167294 TCCGTGATGGTCACATTCC 60 NA Rattus norvegicus 81 Riok3 ENSRNOG00000023376 ENSRNOT00000039377 1 1 1 80 18 3587192 3587211 GTTGTACAAGGAATGCACCC 60 3587254 3587363 ATCAACCAGACCTTCCCAG 59 NA Rattus norvegicus 81 Tmem8c ENSRNOG00000006142 ENSRNOT00000008327 3 1 1 95 3 5608938 5609328 CTTCTTTGAGGAATGGGATTACAC 60 5608866 5608884 TTCTTGTTGACCTTGGGCA 60 NA InUTR Rattus norvegicus 81 Rhox11 ENSRNOG00000028044 ENSRNOT00000035449 3 1 1 65 X 124232901 124236293 GTGGATGAACAGAAAGTAAAGG 57 124236314 124236337 CCTCTGAATCTTCCTAAGTTTAGC 59 NA DesignNoJunction Rattus norvegicus 81 Nckipsd ENSRNOG00000031816 ENSRNOT00000047482 2 1 1 81 8 117608119 117608137 CTGTTATTCCGCCCTTGTC 59 117608180 117608384 TGTACCCAGGTGTTCATAGTG 60 NA Rattus norvegicus 81 Strbp ENSRNOG00000010150 ENSRNOT00000087611,ENSRNOT00000066377,ENSRNOT00000090576 1 3 3 80 3 21850537 21850560 GTCTCAAGTATGAACTCATCTCAG 59 21844841 21850501 TCTGTCCATCTACTTCTACCTC 58 NA Rattus norvegicus 81 Olr224 ENSRNOG00000029766 ENSRNOT00000047239 2 1 1 60 1 171044559 171044577 CACACCCATGCTTAATCCC 59 171044517 171044537 GATTGCATCCTTGACTTCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chpt1 ENSRNOG00000058271 ENSRNOT00000080939 1 1 1 80 7 29053559 29053580 CCAGGTAGCTTTAGTGATTGTC 59 29052269 29053524 TCTAGAATAGGTATCGTATAGTCCC 58 NA Rattus norvegicus 81 Olr1662 ENSRNOG00000061218 ENSRNOT00000086807 1 1 1 60 17 45687455 45687476 GTTGAAATGTCTGTCTTTGCTC 59 45687416 45687438 GAATAAGGATGAGAGGTGTAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpxm2 ENSRNOG00000015902 ENSRNOT00000051853 3 1 1 80 1 204060769 204060790 ACACAGAGGAATTTCAGAAGGA 60 204055079 204060731 TGAAGTCATTTAGACTTCCAGC 59 NA Rattus norvegicus 81 Rprd1b ENSRNOG00000012923 ENSRNOT00000017265 3 1 1 81 3 154526181 154526202 GAGGAGGAAGATGATGACTACC 60 154526240 154527845 TGATTAACTCCTCAGTCAAGAGG 60 NA Rattus norvegicus 81 Npc1 ENSRNOG00000012016 ENSRNOT00000016167 2 1 1 80 18 3620234 3620964 CAACTTGGTGATGACCTGTG 59 3620173 3620191 CTTCCTTTGGTGCTCATGG 59 NA Rattus norvegicus 81 Efhc2 ENSRNOG00000002986 ENSRNOT00000037360 1 1 1 80 X 5896110 5896130 TCTACCTTGAAGATGACACCA 59 5896170 5907732 GCCTGATAGAAGTACCTTGAG 58 NA Rattus norvegicus 81 Gabrg1 ENSRNOG00000002360 ENSRNOT00000003240 2 1 1 80 14 40015352 40025913 GATCCCATAAACATGGAGTACAC 59 40025951 40025971 GGTGCTGTTGAACTTTAAACG 59 NA Rattus norvegicus 81 Arid4a ENSRNOG00000026239 ENSRNOT00000031595,ENSRNOT00000089473 1 2 2 80 6 93513238 93513257 AAGATCAAACAGCAGGAGGA 59 93513298 93515541 GCTTTCAGTTTCTTCCCTCTC 59 NA Rattus norvegicus 81 Slc44a5 ENSRNOG00000042332 ENSRNOT00000089358,ENSRNOT00000064249 3 2 2 80 2 260504832 260504851 AGGATGCACTTTGAAGATGG 58 260504894 260505177 CACGTCACTAATGCCACTC 59 NA Rattus norvegicus 81 AABR07041481.1 ENSRNOG00000005665 ENSRNOT00000007474 3 1 1 89 X 131381800 131381818 CTACTAGCACCATTGCCTG 58 131381919 131381937 TGATGGACCAGCTCATGTG 60 NA DesignNoJunction Rattus norvegicus 81 Angptl2 ENSRNOG00000016678 ENSRNOT00000022585 3 1 1 80 3 12290127 12292211 ATGATGTCTACACAGGAAACTG 58 12292252 12292270 CATTGAGGTTGGAGTGAGC 59 NA Rattus norvegicus 81 Acly ENSRNOG00000016924 ENSRNOT00000023447,ENSRNOT00000043172,ENSRNOT00000077579 3 3 3 80 10 88410810 88413057 TGAACTATGCACAGATCCG 57 88410748 88410766 CCTTCTTGATGAGCTTCCG 58 NA Rattus norvegicus 81 AC115670.1 ENSRNOG00000059342 ENSRNOT00000083706 2 1 1 60 17 45726543 45726564 GTTGAAATGTCTGTCTTTGCTC 59 45726504 45726527 GAATAAGGATGAGAGGTGTAAGGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mab21l2 ENSRNOG00000031398 ENSRNOT00000049461 1 1 1 60 2 185851607 185851625 GGGAGTCTTCAACTTCGTG 58 185851565 185851583 GCTTAGTTTGAGCACTGCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ednrb ENSRNOG00000010997 ENSRNOT00000014747 3 1 1 80 15 88014130 88035045 TAATGCCTACAAGCTGCTG 58 88014068 88014087 GAAGCCTTCTGTATGAAGGG 58 NA Rattus norvegicus 81 Mir22 ENSRNOG00000035620 ENSRNOT00000053743 2 1 1 60 10 62299603 62299621 CCGCAGTAGTTCTTCAGTG 58 62299644 62299663 CTTCAACTGGCAGCTTTAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500594 ENSRNOG00000023112 ENSRNOT00000031564 2 1 1 80 5 169635102 169635188 ACTTCAACAAGGTAGGGCT 59 169635232 169635250 TGACTTTCTGTCGAGAGGG 59 NA Rattus norvegicus 81 Coq10a ENSRNOG00000029571 ENSRNOT00000047530,ENSRNOT00000086939 2 2 2 80 7 2781933 2781953 CACTTAGAGACTATTTGGCGA 58 2781644 2781893 AAAGGAAATCGAGAAGTCCAC 58 NA Rattus norvegicus 81 Coq10a ENSRNOG00000029571 ENSRNOT00000047530,ENSRNOT00000086939 3 2 2 81 7 2781933 2781953 CACTTAGAGACTATTTGGCGA 58 2781643 2781892 CAAAGGAAATCGAGAAGTCCA 58 NA Rattus norvegicus 81 Ttc22 ENSRNOG00000007189 ENSRNOT00000009582 2 1 1 80 5 126241534 126241552 CTGACCTTGAGGAAGTGGT 59 126241593 126241922 CGCCCATGTAATAGTAAACCTG 59 NA Rattus norvegicus 81 RT1-Bb ENSRNOG00000032708 ENSRNOT00000084246 1 1 5 60 20 4047187 4047205 CCATCCCTCCAATGTTACC 58 4047229 4047247 CTCAGTAGTGGAAGCAGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562644 ENSRNOG00000037381 ENSRNOT00000044666 1 1 1 60 X 152108567 152109992 TCCAGAGTAAGCCTGATGG 59 152108525 152108543 TGTTGCTAAATGCCTGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Plxnb2 ENSRNOG00000007133 ENSRNOT00000088623,ENSRNOT00000010467 2 2 2 80 7 130143807 130143829 GACCTGTTGAAGTTTGAAGAGAC 60 130143431 130143767 ATCGTGGGATAGCTTTGGG 60 NA Rattus norvegicus 81 Fgf7 ENSRNOG00000009425 ENSRNOT00000012700 1 1 1 80 3 118318090 118318108 GTGGTACCTGAGGATTGAC 57 118318149 118365600 CTGATTTCCATGATGTTGTAGC 58 NA Rattus norvegicus 81 LOC100912182 ENSRNOG00000031022 ENSRNOT00000048198 2 1 1 60 18 1505185 1505203 AAACCCGAAGGACTTTCTG 58 1505226 1505245 TACTGGGTCACTTTGTGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxo15 ENSRNOG00000038225 ENSRNOT00000058199 2 1 1 80 18 81826247 81831648 CCTGATCCAAACAGTCCAC 58 81831691 81831710 GCCCATCATAGTAGACTCAC 57 NA Rattus norvegicus 81 AABR07068221.2 ENSRNOG00000049962 ENSRNOT00000064642 1 1 1 80 9 91092513 91092531 TCGTCTATACCATGGCACC 59 91090092 91092470 AAGAAGTCTTCCTGCCTCTC 59 NA Rattus norvegicus 81 Dync1h1 ENSRNOG00000006178 ENSRNOT00000073950,ENSRNOT00000009377 2 2 2 80 6 134991204 134991222 GAGGGAGAAAGAAGAGCGA 59 134991265 134991484 TGGATCAGAATCTCCTGCTC 59 NA Rattus norvegicus 81 LOC100910138 ENSRNOG00000031710 ENSRNOT00000051031 2 1 1 83 14 33908890 33911134 CAATTCAGAACACCAGACTGTC 60 33911178 33911196 GTTCATATCCGTTCCGCAC 59 NA Rattus norvegicus 81 LOC100361595 ENSRNOG00000042570 ENSRNOT00000068166,ENSRNOT00000082791 2 2 2 87 4 109474246 109474265 TATCTTTGTGTCCTCCCTGG 59 109473598 109474197 CATTGTGCCATGTGAAAGAC 58 NA Rattus norvegicus 81 Nudt12 ENSRNOG00000022576 ENSRNOT00000066968 1 1 1 80 9 105691030 105691050 TGGACTGCTTTAATGTATGCC 59 105690362 105690990 CGATCTGTCACATCCTTTCTC 59 NA Rattus norvegicus 81 Palb2 ENSRNOG00000025126 ENSRNOT00000047420 3 1 1 80 1 192075921 192075940 AGTTTCTCTTTGGAAACCGT 58 192073420 192075880 TGTAATACTGGAACCTCTGTG 57 NA Rattus norvegicus 81 Anxa10 ENSRNOG00000014339 ENSRNOT00000059724 2 1 1 80 16 29720532 29722162 GCCTACTGTTTACAATACAGCA 59 29722199 29722221 CATAAGAGTATCTCGGAAGTGTC 58 NA Rattus norvegicus 81 RGD1305184 ENSRNOG00000038957 ENSRNOT00000045950 1 1 1 60 18 55667025 55667046 AATTACAGAAGCAGCCATTGAC 60 55667066 55667085 TTCTAGCCAGACAAACTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102554393 ENSRNOG00000005780 ENSRNOT00000007640,ENSRNOT00000070873 1 2 2 80 3 5548539 5551328 TGGGAAAGGTCTGAAGGAG 59 5551372 5551390 AAGCCACATAGCTCTTCCT 58 NA Rattus norvegicus 81 Ago2 ENSRNOG00000008533 ENSRNOT00000011898 1 1 1 80 7 114368412 114377089 AGTGAACAGGGAAATAGTGGAG 60 114368353 114368371 CCATCAAACACTGGCTTCC 59 NA Rattus norvegicus 81 Msmb ENSRNOG00000039786 ENSRNOT00000026772 2 1 1 83 16 8285705 8285723 GTGACAGCATCCAATGCAG 60 8285764 8288033 GTCTACATCTGTACATTCATCAGAC 59 NA Rattus norvegicus 81 Abhd3 ENSRNOG00000029370 ENSRNOT00000041878 3 1 1 81 18 1903742 1903760 TTATCCACCACGTTCACAG 58 1898839 1903697 TTCAGAAGCAGCATTCCTC 58 NA Rattus norvegicus 81 Fitm1 ENSRNOG00000019019 ENSRNOT00000025725 1 1 1 60 15 34252029 34252048 GCAGTTTCACGTTAACTCTC 57 34252068 34252439 CTTTATGTTGAAGAAGTTGCCG 59 NA DesignNoJunction Rattus norvegicus 81 Foxe1 ENSRNOG00000023497 ENSRNOT00000012637 2 1 1 60 5 61955426 61955444 CAAGAAGTGGCAGAACAGC 60 61955468 61955486 GATCTTGAGGAAGCAGTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pla2g5 ENSRNOG00000016838 ENSRNOT00000022716 3 1 1 81 5 157248940 157249724 TTAGTCATCTGCGAACACG 58 157248877 157248895 TTCTCCTCAGGCAGTAGAC 58 NA Rattus norvegicus 81 Dsg4 ENSRNOG00000022364 ENSRNOT00000038450 3 1 1 80 18 12086646 12087825 GATTCCTCTGAAATCTACACCA 58 12087866 12087884 TGTATTGAGCTCCACTCCT 58 NA Rattus norvegicus 81 Cd81 ENSRNOG00000020451 ENSRNOT00000027760 1 1 1 80 1 216250808 216250828 ATGATGTTTGTAGGCTTCCTG 58 216250870 216251557 AAGGCAAGTGAAGAACGTC 58 NA Rattus norvegicus 81 Rabggtb ENSRNOG00000009992 ENSRNOT00000065997 2 1 1 80 2 260111400 260112366 AGACCCGAGAAGTTACCAG 58 260111338 260111357 AATCCAATGAAGTCTCCCGA 59 NA Rattus norvegicus 81 Ydjc ENSRNOG00000001861 ENSRNOT00000002542,ENSRNOT00000078394 1 2 2 67 11 88092356 88092374 GATTTCGAGAGGCCTTAGC 58 88092102 88092120 TTGAGCTTCTAGCTCCTCC 59 NA DesignNoJunction Rattus norvegicus 81 Tacr1 ENSRNOG00000005853 ENSRNOT00000007984 1 1 1 80 4 113248174 113340314 CCTTCGACAGATACATGGC 58 113340356 113340376 TGACAAAGATGACCACTTTGG 59 NA Rattus norvegicus 81 Sumf2 ENSRNOG00000000922 ENSRNOT00000001224 3 1 1 81 12 30483381 30486515 TAAAGACTTCAGGGAGTTTGTC 58 30483321 30483339 ATCCTCAAAGACGAAGCTC 57 NA Rattus norvegicus 81 Krtap16-5 ENSRNOG00000040064 ENSRNOT00000061606 1 1 1 60 11 28900092 28900110 TTGGAGGCTACGGATATGG 59 28900050 28900068 CTGGAGAACCCGTATCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dolpp1 ENSRNOG00000017663 ENSRNOT00000086789,ENSRNOT00000064557 2 2 2 98 3 8958395 8961468 AATACCCTGCAGGTGATCTG 60 8961526 8961547 GCTTGAATATGATGAGGGTCAC 59 NA Rattus norvegicus 81 Sgcd ENSRNOG00000002372 ENSRNOT00000003224 3 1 1 80 10 32280012 32442103 CTTCACAATTGATGGAATGGG 58 32279952 32279973 GGTTGTAAGAACTCTGAGTCTC 58 NA Rattus norvegicus 81 Gbas ENSRNOG00000023919 ENSRNOT00000035621 3 1 1 82 12 30546862 30546880 TCTGGAGGTATGAGGGAGG 60 30545530 30546819 ACGGAAACTTACAAATTCCTGG 59 NA Rattus norvegicus 81 Uts2b ENSRNOG00000038512 ENSRNOT00000042650 1 1 1 80 11 76839963 76842200 CTTAGACAGCTAAAGAAGCTGAG 59 76842236 76842258 GGATAGCTTGTCTAAAGCATTGG 60 NA Rattus norvegicus 81 RGD1308601 ENSRNOG00000017215 ENSRNOT00000038767 2 1 1 80 18 74037509 74058703 CAGAGATACCAGATGGACCTC 59 74037449 74037470 CCACATTTATCACTTCTGGGTC 59 NA Rattus norvegicus 81 Aqp6 ENSRNOG00000053181 ENSRNOT00000083570 1 1 1 80 7 141259931 141260207 ATCTCATTGGGATCTACTTCAC 58 141260247 141260266 CAAACTTCCCAACAATGACC 58 NA Rattus norvegicus 81 Csf3 ENSRNOG00000008525 ENSRNOT00000011509 2 1 1 80 10 86618429 86618447 CATACCTGCAGAGCTTCCT 59 86618491 86618511 TTTCTGGAAAGTGCTTCTGC 59 NA Rattus norvegicus 81 D2hgdh ENSRNOG00000019012 ENSRNOT00000078222,ENSRNOT00000025711 2 2 2 80 9 100961270 100961291 TTTGATGAAGTCATCCTGTCCA 60 100961331 100963320 CTGGCAAACCAGAATTCCAG 60 NA Rattus norvegicus 81 Cwc15 ENSRNOG00000008490 ENSRNOT00000011855 3 1 1 81 8 12996849 12998016 GATCCTCTCACAGATGAGGA 58 12998060 12998078 CTAGCTCTGCAAGAAGAGC 58 NA Rattus norvegicus 81 Slc6a3 ENSRNOG00000017302 ENSRNOT00000079987,ENSRNOT00000040291 2 2 2 84 1 32338072 32339429 CCAATAACTGCTATAGAGACGC 59 32338009 32338027 AAGGAGAAGACGACGAAGC 60 NA Rattus norvegicus 81 Arpc5l ENSRNOG00000014317 ENSRNOT00000019405 2 1 1 99 3 23306161 23306708 TCAAGCTGTGAAGGAACGA 59 23306771 23306789 ATTCCTGTCCAGTGACTGC 60 NA Rattus norvegicus 81 Itih1 ENSRNOG00000033386 ENSRNOT00000051751 3 1 1 80 16 7017032 7017053 CACATGCTAGAGAATCATGTGG 59 7016423 7016994 TTCTGTCTTCATCCTCTTAGCC 60 NA Rattus norvegicus 81 Olr1627 ENSRNOG00000012510 ENSRNOT00000016674 2 1 1 60 15 26888586 26888606 TTCTACACCATCTTCACACCC 60 26888628 26888646 CCTCTTTGTTTCTCAGCGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102552474 ENSRNOG00000039615 ENSRNOT00000060737 3 1 1 60 X 14755322 14755342 ACTTACAGAGATTCCATGCAG 58 14755282 14755301 CTTCATAGCTTGATTGGCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plxna1 ENSRNOG00000017003 ENSRNOT00000022951 1 1 1 80 4 121225966 121226096 CTACAAGACCCTGACCCTG 59 121225904 121225923 TCACAGTTCAGTCCCTTCAC 60 NA Rattus norvegicus 81 Eln ENSRNOG00000001469 ENSRNOT00000040069,ENSRNOT00000032780 2 2 2 87 12 25016401 25016419 GTTCCTGGTGGAGTAGCAG 60 25016559 25016731 CTCCACCAAGACCGTACTG 60 NA Rattus norvegicus 81 RGD1311345 ENSRNOG00000019232 ENSRNOT00000089138 2 1 2 97 17 6684639 6689005 CGTGGTTTGAGGAGAAATGC 60 6689065 6689083 CAAGACAGTCCCGGATCAG 60 NA InUTR Rattus norvegicus 81 Dph3 ENSRNOG00000019727 ENSRNOT00000026742 3 1 1 81 16 8207315 8207337 CTTTCAATATGACGAGGACACAG 60 8206849 8207277 CAAATCTTCCTTGGTGATGGAG 59 NA Rattus norvegicus 81 Gsc ENSRNOG00000010605 ENSRNOT00000014204 2 1 1 83 6 128148026 128148044 ACAAAGTACCCAGACGTGG 60 128147600 128147980 CTTAAACCAGACCTCCACCT 59 NA Rattus norvegicus 81 Qprt ENSRNOG00000016980 ENSRNOT00000023080 2 1 1 131 1 198544938 198545191 TATGGAGAAGGCAGTGCTG 60 198544825 198544843 AAGTTGTCCAGCATGACCA 60 NA Rattus norvegicus 81 Ntpcr ENSRNOG00000019922 ENSRNOT00000026965 3 1 1 81 19 58568424 58576003 TCCTAAGGAATGCTGTCCC 59 58576048 58576066 CTGAACAGCTCCATCTTCC 58 NA Rattus norvegicus 81 Defb25 ENSRNOG00000036895 ENSRNOT00000055406 1 1 1 60 3 148104451 148104469 TCTGCTCATTGTGGCTCTC 60 148103784 148104428 TTTGAATTCAGTGCTCCCTG 59 NA DesignRelaxed Rattus norvegicus 81 Gabrb1 ENSRNOG00000002327 ENSRNOT00000003170 2 1 1 80 14 38758740 38758758 GCTTGCATGATGGATCTCC 59 38664162 38758699 GGTGGTATAGCCATAACTTTCG 59 NA Rattus norvegicus 81 Mmp15 ENSRNOG00000012622 ENSRNOT00000017629 1 1 1 81 19 10082709 10084085 CTTCAAAGGTAACCGCTACTG 59 10082648 10082667 TGTACCATAGCTGCTCAGTG 60 NA Rattus norvegicus 81 Ky ENSRNOG00000008210 ENSRNOT00000010992 3 1 1 80 8 110998748 110998766 CAGCTGACTGTGGAAATCC 59 110998809 111001008 ACCTTGTAAACGTTTAGCCA 58 NA Rattus norvegicus 81 AABR07002900.1 ENSRNOG00000047364 ENSRNOT00000075116 2 1 1 60 1 88621375 88621395 GACAACATCCTGTACAGACTG 59 88621417 88621830 ATAAACAGTAGGCAGTGCC 58 NA DesignNoJunction Rattus norvegicus 81 Atp8a1 ENSRNOG00000034200 ENSRNOT00000044017 1 1 1 80 14 42180017 42180786 CTCCTATTGGACATGGTTCAG 58 42180823 42180846 GATGAGTAGATCCCAAAGAATACC 59 NA Rattus norvegicus 81 Svs4 ENSRNOG00000013796 ENSRNOT00000018456 2 1 1 61 3 160660792 160660810 TAGTGACAGGAGCCATTGG 59 160661294 160661313 GACAACTTCTTCCGACTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Svs4 ENSRNOG00000013796 ENSRNOT00000018456 3 1 1 62 3 160660788 160660806 CTTCTAGTGACAGGAGCCA 58 160661292 160661310 AACTTCTTCCGACTGTGAG 57 NA DesignNoJunction Rattus norvegicus 81 Cryl1 ENSRNOG00000008989 ENSRNOT00000012093 3 1 1 80 15 37647907 37647926 GAGGCTTCAAGGTGAAACTC 59 37625449 37647867 ATTTCATCTCCTTCCTGATGCT 60 NA Rattus norvegicus 81 Serpind1 ENSRNOG00000001865 ENSRNOT00000084973,ENSRNOT00000031819 1 2 2 80 11 87916345 87916365 GGAATGAAGACTCTTGAAGCA 58 87915050 87916303 CTCTCGGGTTCTGTTTGTC 58 NA Rattus norvegicus 81 Elf3 ENSRNOG00000006330 ENSRNOT00000008754 3 1 1 82 13 52086658 52086676 GTTCCCACTCCTCTGACTC 59 52086440 52086613 AGGAAAGCCATCTCTAGGGA 60 NA Rattus norvegicus 81 Zfp866 ENSRNOG00000042580 ENSRNOT00000034415 3 1 1 80 16 21422367 21422787 TGGGAGAAATATGAGAGGTTCC 59 21422826 21422846 CGTGTCAGAGTTTCTTCAACC 60 NA Rattus norvegicus 81 Sp7 ENSRNOG00000014082 ENSRNOT00000018828 2 1 2 131 7 143960115 143966754 TCTGCTTGAGGAAGAAGCT 59 143960002 143960020 TATGGCTTCTTTGTGCCTC 58 NA Rattus norvegicus 81 Caap1 ENSRNOG00000007299 ENSRNOT00000010173 3 1 1 110 5 113500780 113522522 AATCAGTCAGCAAGATACCTG 58 113481469 113481490 CTGAGTACATCACTATCTTCCC 58 NA Rattus norvegicus 81 Rbm8a ENSRNOG00000021215 ENSRNOT00000028807 3 1 1 109 2 198755368 198755686 ATGGTGACGAAAGCATCCA 60 198755874 198755893 ACTGTCATAATCTTCCCGCA 59 NA Rattus norvegicus 81 Grm6 ENSRNOG00000000233 ENSRNOT00000000249 1 1 1 80 10 36357454 36357473 ACCACCTGTATTATCTGGCT 58 36357512 36358838 GGTTTGGATGTAGATCTTCTCAG 59 NA Rattus norvegicus 81 RGD1562758 ENSRNOG00000048704 ENSRNOT00000043709 3 1 1 60 18 63825010 63825028 CATGTTTGTGATGGGTGTG 57 63824968 63824987 ATTGCTGACAATCTTGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1646 ENSRNOG00000053618 ENSRNOT00000081045 2 1 1 60 15 32925442 32925461 GTTCACCTCTGTCATCTTCC 58 32925401 32925419 GATGGTCTTATGTCCCGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rem2 ENSRNOG00000011646 ENSRNOT00000016020 1 1 1 100 15 33123171 33124246 CATCTGGGAACAGGGAGAC 60 33124310 33124328 AGCTTCGTCGATCTGTGAC 60 NA Rattus norvegicus 81 Hsd17b3 ENSRNOG00000019096 ENSRNOT00000025850 3 1 1 80 17 1595075 1597079 TCTCAGAAGAGATTGAGAGGAC 59 1595016 1595037 GGTCATAGATGTCTTCTCTGGT 59 NA Rattus norvegicus 81 AABR07068455.1 ENSRNOG00000046623 ENSRNOT00000046409 2 1 2 173 9 105944390 105944527 ATGATGATTGGGACCACAGG 60 105945337 105946149 TGATGCTGAACTCATTGTTCAG 59 NA Rattus norvegicus 81 LOC498826 ENSRNOG00000031060 ENSRNOT00000046326 1 1 1 80 18 15276734 15283747 ATACAAGAGATGGACTGGAGC 59 15276674 15276692 CATGACCATTGCAACTCCG 60 NA Rattus norvegicus 81 Abhd14a ENSRNOG00000011936 ENSRNOT00000077514,ENSRNOT00000016056 3 2 3 91 8 115146162 115147177 AAGAGTTCCACAGAGGCTG 59 115146089 115146108 CAGTAGGAACATGAGGAGCA 59 NA InUTR Rattus norvegicus 81 Cdcp2 ENSRNOG00000009221 ENSRNOT00000012427 3 1 1 81 5 126698651 126703610 GCTATGGAAGGTGTCAAGTG 59 126703651 126703672 GATACAGACTTGGGAAGTTTGG 59 NA Rattus norvegicus 81 Chst13 ENSRNOG00000025930 ENSRNOT00000029915 1 1 1 230 4 122231141 122231159 AAACAAAGTTCTGGGCTCC 58 122225220 122225238 ACGTAGCAGTACAGAAGCC 60 NA DesignNoJunction Rattus norvegicus 81 Frs2 ENSRNOG00000005642 ENSRNOT00000007472,ENSRNOT00000080983 2 2 2 87 7 60135865 60135883 CATCCTTCTGTGGGAAGTG 58 60134033 60135817 AAGTATGTACTTGTTCCTCAGC 58 NA Rattus norvegicus 81 Ang2 ENSRNOG00000025562 ENSRNOT00000032536 1 1 1 60 15 28103939 28103957 AATGGAAGCCCTTACGGAG 60 28103897 28103915 AAGTGGTGATCTGGAAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myog ENSRNOG00000030743 ENSRNOT00000042046,ENSRNOT00000087240 1 2 2 84 13 51127558 51127576 GTGAATGCAACTCCCACAG 59 51127624 51128196 AGCAAATGATCTCCTGGGT 59 NA Rattus norvegicus 81 LOC100912159 ENSRNOG00000046583 ENSRNOT00000074072 2 1 1 60 10 12433244 12433264 GAACCCTTTCATCTACAGCCT 60 12433204 12433224 GAGCACTTTCTTTAGAGCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trappc12 ENSRNOG00000009039 ENSRNOT00000029859 3 1 1 80 6 48008225 48016564 ACAACATTCAGGGAGATGC 58 48008163 48008182 TTAAGACTTGCCTCTTTGCT 58 NA Rattus norvegicus 81 Hcrtr1 ENSRNOG00000013838 ENSRNOT00000018674 1 1 1 81 5 148349182 148349200 CTTCACCTTCTCCCACTGG 60 148346821 148349137 CCGAAATTTGCCACTGAGG 60 NA Rattus norvegicus 81 Dusp2 ENSRNOG00000013862 ENSRNOT00000018549 1 1 1 80 3 119777596 119777957 GTTCCTATCTATGACCAGGGTG 60 119777997 119778016 AAGATCTGAGGAGTGGTTGC 60 NA Rattus norvegicus 81 Yeats4 ENSRNOG00000005689 ENSRNOT00000007580 1 1 1 80 7 60289561 60289579 ATGCAGCAACTGTTAACCA 58 60288106 60289519 CACTTCAAGTTCTGCAAACTC 58 NA Rattus norvegicus 81 Ttc4 ENSRNOG00000042467 ENSRNOT00000010229 2 1 1 80 5 126280037 126280055 AGAAGAAGTGTGCAGACCC 60 126278336 126279996 GGAAATTGCCGAGATAGTACTG 59 NA Rattus norvegicus 81 Ttc4 ENSRNOG00000042467 ENSRNOT00000010229 3 1 1 80 5 126281620 126281638 TCCCAAGGAGTTTCCTGAC 59 126280133 126281576 GTCTTGGCTTGCTCTTCTG 59 NA Rattus norvegicus 81 Rn60_X_0752.1 ENSRNOG00000051243 ENSRNOT00000075937 2 1 1 60 X 74295777 74295796 TTCTTGCAGAGAAAGTGGAG 58 74295819 74295837 GTGTAGTCTATTTCCGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC686074 ENSRNOG00000030364 ENSRNOT00000051911 1 1 1 60 18 24312808 24312826 CCAAGCTCTCCAAGATACG 58 24312766 24312785 TTAATGACAGTGAGGACACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0748.3 ENSRNOG00000051053 ENSRNOT00000077001 3 1 1 86 X 73903976 73903994 TAGCAAGTGTTCTCCCTCC 59 73904042 73918963 CATGCTAAGGTGTTACTGTGC 60 NA Rattus norvegicus 81 Dnajc15 ENSRNOG00000009063 ENSRNOT00000087569 3 1 2 119 15 60011061 60014585 TTAGGAGTAAGCCCATCTGC 59 60009947 60009965 TTAACGTGACTGCAGTCCA 59 NA Rattus norvegicus 81 Sqstm1 ENSRNOG00000003147 ENSRNOT00000059255,ENSRNOT00000004308 2 2 2 92 10 35713753 35714015 CATTAAAGAGAAGAAGGAGTGC 57 35713682 35713700 CCATCACAAATCACGTTGG 57 NA Rattus norvegicus 81 Rn60_X_0748.2 ENSRNOG00000051293 ENSRNOT00000076241 3 1 1 60 X 73977378 73977396 CCTTGTAACACAAGGAGGC 59 73977418 73977438 AGGATTGTTGGTAACTTGAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itsn2 ENSRNOG00000046741 ENSRNOT00000074150 1 1 1 80 6 30163613 30164762 AACTGAAGTGTGGGAATATGGA 60 30163554 30163574 AGAGGAAGAGGTTGTTGAGAC 60 NA Rattus norvegicus 81 Map2k4 ENSRNOG00000003834 ENSRNOT00000005293 1 1 1 80 10 52198952 52201588 TCACATTGTACGAGTTGGC 58 52198890 52198908 TCACCACTTGTGTTAGCTG 58 NA Rattus norvegicus 81 Hmgb2 ENSRNOG00000013167 ENSRNOT00000017635 3 1 1 81 16 36079017 36079384 AGATGGAAGACCATGTCTGC 60 36078955 36078973 TCTCCCTGTCATAACGAGC 59 NA Rattus norvegicus 81 Gnptg ENSRNOG00000024455 ENSRNOT00000029674 2 1 1 80 10 14593523 14593541 TCACGGGAGGTACAAAGAC 59 14593373 14593479 AGAGTGGGTGGTTTCTGTG 60 NA Rattus norvegicus 81 Zbtb42 ENSRNOG00000037562 ENSRNOT00000030879 1 1 1 208 6 137243241 137243259 GGAAAGCTTGCAGAACGAG 60 137243858 137243876 TGGAAGTAGACACTGCACG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Cpa2 ENSRNOG00000028092 ENSRNOT00000029608 1 1 1 80 4 57868420 57871390 TAATGAGCTGGATGAAGTGG 57 57871431 57871451 ATGGGTCCCACTTTATAACTG 58 NA Rattus norvegicus 81 Rn60_X_0719.3 ENSRNOG00000051165 ENSRNOT00000075990 2 1 1 60 X 70946039 70946060 CTACCACTTTCAGAAGTTGGTC 59 70946080 70946099 CTTTCTCTTGAGCTTGGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nol4 ENSRNOG00000014775 ENSRNOT00000041125 1 1 1 80 18 13881347 13881367 TCTGACCTTAGCTCCAATCTG 59 13787500 13881305 TGCAGCAGAGTCATCATCC 60 NA Rattus norvegicus 81 Ighg ENSRNOG00000030332 ENSRNOT00000006975 3 1 1 81 6 139141166 139141184 TTCAGATGCAAGGTCACCA 59 139140987 139141122 GAACTTGTGTTCTGCCTTCG 60 NA Rattus norvegicus 81 Col11a2 ENSRNOG00000000463 ENSRNOT00000085547 3 1 1 81 20 3857133 3857153 GGGTGTTCTGCAACTTTACAG 60 3857195 3857351 GAGTCCACGTAGGAGAACTG 60 NA Rattus norvegicus 81 Arhgap15 ENSRNOG00000031168 ENSRNOT00000049884 2 1 1 80 3 29010749 29010768 TGAACGAGAACATTCCACAG 58 29010811 29039193 CCATCAACTTCTAGGCCTC 57 NA Rattus norvegicus 81 Krtap15-1 ENSRNOG00000049399 ENSRNOT00000072546 2 1 1 60 11 28780555 28780576 CTACCTACAACTCTTTCTACCC 57 28780597 28780615 TGCTGGAAGTTCTTTGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tuba8 ENSRNOG00000048169 ENSRNOT00000074096 3 1 1 84 4 153784944 153785589 CAGTAGTAGACGAGGTGCG 60 153785637 153785655 TTAGCTGCATCCTCCTTCC 59 NA Rattus norvegicus 81 Coa4 ENSRNOG00000025385 ENSRNOT00000038764 3 1 1 78 1 165549350 165549368 TTACTGCCTACAGACCCTG 58 165549410 165551294 TGACATCTTGAGGAACCCG 59 NA DesignRelaxed, InUTR Rattus norvegicus 81 AABR07061614.1 ENSRNOG00000032820 ENSRNOT00000048672 3 1 1 80 4 136078837 136078857 TGAGGAAGAAGTAGAGGAACC 59 136078898 136078955 GCTCCTCTAAATGTTCCGGA 60 NA Rattus norvegicus 81 AABR07065651.3 ENSRNOG00000050912 ENSRNOT00000073304 3 1 1 85 6 138631745 138631764 CACCCTATACCTGCAAATGG 58 138631636 138631698 GCTGGTCACTAGTATCTGTG 58 NA Rattus norvegicus 81 Irgc ENSRNOG00000024257 ENSRNOT00000030900 1 1 1 116 1 81293284 81295274 CATCTGAGCCACTGAGGAG 60 81293186 81293204 ATGAGGATGGTGGTCTCCT 60 NA InUTR Rattus norvegicus 81 LOC691952 ENSRNOG00000037178 ENSRNOT00000056119 3 1 1 81 3 114129853 114131240 GACACCCTGAGAATCTATCAG 57 114131281 114131301 CTACTGCAGCAAGATAGTAGG 58 NA Rattus norvegicus 81 LOC100912537 ENSRNOG00000047112 ENSRNOT00000074429 2 1 1 80 1 259100050 259100480 TGACCTAAGTCACTCTATGACC 59 259099991 259100009 CCAAACTGTACTTCGTGCC 59 NA Rattus norvegicus 81 Pcdhga9 ENSRNOG00000030352 ENSRNOT00000044434 2 1 1 60 18 30885872 30885890 CAGGCAGATCCACTATTCC 57 30885912 30885932 GATGTTTCCCACTGTATAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fgf14 ENSRNOG00000009288 ENSRNOT00000041551 2 1 1 80 15 110546687 110550250 CCAATTCCACTCTGTTCAACC 60 110546627 110546648 CTATGTACAACCCTGTCTTCAC 59 NA Rattus norvegicus 81 Cbr1 ENSRNOG00000047848 ENSRNOT00000042283 1 1 1 88 11 33813364 33813867 TCGCCTTCAAAGTTGTTGAC 59 33813918 33813936 GCAGACATCTTGGGTACCA 59 NA Rattus norvegicus 81 Smg8 ENSRNOG00000005769 ENSRNOT00000008107 1 1 1 61 10 74386514 74386532 GAGAGGAGTTTGACCGACC 60 74384409 74386493 TCTCCTGATTTAGGTAAGGAGTG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1561118 ENSRNOG00000034060 ENSRNOT00000040561 2 1 1 60 10 76274688 76274706 CTGTTCAAGGATGACCAGC 59 76274646 76274664 TAGTGAAGCCACAGTCACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sf3b5 ENSRNOG00000014908 ENSRNOT00000019994 3 1 1 60 1 7102010 7102028 AACTACTTCGCCATTGCTG 59 7102052 7102070 TCTCCATCAGGTTGAAACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf11l1 ENSRNOG00000057589 ENSRNOT00000080048 2 1 1 82 5 129095004 129112782 CCATATCAGGAACAAGTTCCTG 59 129094943 129094961 TCCTCTTCAGTCAGCTGAG 58 NA Rattus norvegicus 81 Gphn ENSRNOG00000028366 ENSRNOT00000075054,ENSRNOT00000030470 3 2 2 80 6 101856945 101856965 GAATACCACCGGTGTATACTG 58 101857006 101858186 GCTGCTCATCTGATTACCTG 59 NA Rattus norvegicus 81 Pcgf1 ENSRNOG00000008360 ENSRNOT00000011173 1 1 1 80 4 113912372 113912390 TTGACCACTCTAAAGCCCA 59 113912434 113912670 TGTCTTTGCCAGAACTCAG 58 NA Rattus norvegicus 81 Duox1 ENSRNOG00000033348 ENSRNOT00000046843 1 1 1 80 3 114272031 114272225 GGTCTTCATGAAAGGCTCC 58 114272269 114272287 GAGATGAGACCATTCCCGT 59 NA Rattus norvegicus 81 Tob1 ENSRNOG00000002828 ENSRNOT00000003780 1 1 1 60 10 81914764 81914782 GAATGTTCCCAGGTGACAG 58 81914804 81914824 TCAAAGGCATTACTGTACTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Exosc3 ENSRNOG00000012409 ENSRNOT00000016582 1 1 1 80 5 60870664 60870683 CAGCTTCTTTGTCCTACCTG 58 60868836 60870624 CATAGATGAGATCTCCAACCTG 58 NA Rattus norvegicus 81 Rabac1 ENSRNOG00000020233 ENSRNOT00000027435 1 1 1 73 1 81844129 81845855 TAAGCTTGTGCTCTTTGGC 59 81844074 81844092 AAGGGAAAGAGACACCACC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100362216 ENSRNOG00000017557 ENSRNOT00000023592 1 1 1 84 9 93064619 93068001 AGTTCAAGAGCACCTCCAG 59 93068049 93068067 ATTCCCACGGTCTTCACAG 60 NA Rattus norvegicus 81 Rpl39l ENSRNOG00000032300 ENSRNOT00000051564 2 1 1 76 10 5533467 5533485 TCCACTGGCTTAGACTCAC 59 5529908 5529926 AAGGTCTTGTGAGAAGCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Col6a3 ENSRNOG00000019648 ENSRNOT00000077924,ENSRNOT00000026719,ENSRNOT00000087595,ENSRNOT00000081301,ENSRNOT00000026707 3 5 5 80 9 97937021 97938196 TTGGTCACAGACAGATAAACAC 59 97936962 97936980 TCACTGGCTTCATTGTGGT 60 NA Rattus norvegicus 81 Ankrd32 ENSRNOG00000040279 ENSRNOT00000018457 3 1 1 81 2 4101304 4101999 CAGAGTTCCTTGAGTTAAACCA 58 4101244 4101264 CATGACGATTCTCCTTCTGAC 59 NA Rattus norvegicus 81 Cd3e ENSRNOG00000016069 ENSRNOT00000047291,ENSRNOT00000091190 3 2 2 99 8 49299517 49299535 GAGGAACTGGTACTGGTGG 59 49298212 49298960 TTTCGGATGGGCTCATAGTC 60 NA Rattus norvegicus 81 Zbtb43 ENSRNOG00000017017 ENSRNOT00000022814 3 1 1 80 3 12502824 12502843 ATTCATCCCAGATAGGGCAC 59 12494594 12502783 TCTTGTTTAGTGTGGTTCGAC 59 NA Rattus norvegicus 81 LOC100912889 ENSRNOG00000048117 ENSRNOT00000045104,ENSRNOT00000050676,ENSRNOT00000049917 3 3 3 81 14 763273 763293 CATCAGAAACAAACAGCAGAC 58 762048 763233 CCATATGTACTGTCTCATTGGA 58 NA Rattus norvegicus 81 Slc15a4 ENSRNOG00000000962 ENSRNOT00000001277 3 1 1 80 12 32754388 32761728 CGGATCAGGTCAAAGATCGA 60 32761769 32761789 TTGCTCCCAAATTAATGCTCC 59 NA Rattus norvegicus 81 Samd11 ENSRNOG00000020342 ENSRNOT00000027564 2 1 1 80 5 173675489 173676991 CATCCCTAGCCACGATCTG 60 173675427 173675448 TGTACTTCCAAACTACTGGGAC 60 NA Rattus norvegicus 81 Hpca ENSRNOG00000006979 ENSRNOT00000009153 2 1 1 80 5 147302998 147303016 CTTCAGCATGTACGACCTG 58 147296328 147302954 ATCTTGTAAATGGCCTGCA 57 NA Rattus norvegicus 81 Cnn2 ENSRNOG00000043044 ENSRNOT00000065093 3 1 1 86 7 12785640 12785658 TGGATAGAAGGACTCACGG 58 12785707 12786585 GTTCATGAGTGTGCATAGGA 58 NA Rattus norvegicus 81 Pck2 ENSRNOG00000018536 ENSRNOT00000025260 2 1 1 80 15 34221723 34221742 AAACTGAACAAGGAGTCCTC 58 34221783 34221881 GATGGCTTCTTGTCTATTGTG 57 NA Rattus norvegicus 81 Rhot2 ENSRNOG00000019930 ENSRNOT00000027083 3 1 1 80 10 15207651 15207750 AGGCTATCACAGTTACCCG 59 15207589 15207608 ACACCTTACACATGAGGACG 60 NA Rattus norvegicus 81 Laptm4a ENSRNOG00000006865 ENSRNOT00000085797,ENSRNOT00000091651,ENSRNOT00000009665 3 3 3 80 6 34056246 34056352 GAGCCATTTCTTATCAAGTGG 57 34056393 34056412 CTACCAGACAACTGAGAACG 58 NA Rattus norvegicus 81 LOC103692716 ENSRNOG00000059714 ENSRNOT00000086310 2 1 1 80 6 135110208 135110229 ACATCAAGTTGTATGTTCGCAG 60 135110001 135110172 CTCTGATGAAATTCAGATACTCGG 59 NA Rattus norvegicus 81 Muc13 ENSRNOG00000001794 ENSRNOT00000002444 2 1 1 80 11 70195819 70198893 CTATTCCCAACAAGATCGGT 57 70195758 70195777 GTGCATTGTAAACCATTCCG 58 NA Rattus norvegicus 81 Notch2 ENSRNOG00000018835 ENSRNOT00000025718 3 1 1 80 2 200308795 200308930 TGTTGTCAGTGAATCGGAG 58 200308973 200308992 AGGAACAGGATAATGACCAC 57 NA Rattus norvegicus 81 Smlr1 ENSRNOG00000047821 ENSRNOT00000071726 3 1 1 121 1 20856272 20856292 GCGATCTTCTTACAGGAACTC 59 20856374 20877360 TGTTCTTCAACTGCCATCAG 59 NA Rattus norvegicus 81 Ttc19 ENSRNOG00000002977 ENSRNOT00000057777 3 1 1 81 10 48609446 48609466 CTGCATTTCAACTCTAGAGGG 59 48609506 48623688 AGTATTGGCTCTTTCTTCTGAC 58 NA Rattus norvegicus 81 Kcnv2 ENSRNOG00000012566 ENSRNOT00000016757 3 1 1 128 1 245398388 245398408 GATGCTCTTCATCACTATGGG 58 245398498 245412858 GTAGAGATGCTTACCGCAG 58 NA Rattus norvegicus 81 Slc7a8 ENSRNOG00000014311 ENSRNOT00000092160,ENSRNOT00000019618 3 2 2 80 15 33371818 33371838 GGGTGTTCCTGTATACTTCCT 59 33371290 33371780 AGAGTTAGGGACTCAATGAAGTC 60 NA Rattus norvegicus 81 Gpx4 ENSRNOG00000013604 ENSRNOT00000077681,ENSRNOT00000018691 3 2 2 97 7 12517651 12517671 AGCAAGATCTGTGTAAATGGG 58 12516847 12517593 CATTTGATGGCATTTCCCAG 58 NA Rattus norvegicus 81 Nat2 ENSRNOG00000049498 ENSRNOT00000044198 2 1 1 80 16 23962125 23984534 AATTGACTGGAAACCATGGAC 59 23962065 23962085 TTCCAAGTCCAGTTTGTTCCT 60 NA InUTR Rattus norvegicus 81 Nsd1 ENSRNOG00000016680 ENSRNOT00000060928 2 1 1 80 17 9895311 9897590 TGCATAAGGTAAGTTCCCGA 59 9895250 9895268 CATCCACCTGCTTGTTCTG 59 NA Rattus norvegicus 81 Tssk3 ENSRNOG00000008693 ENSRNOT00000011887 1 1 1 95 5 147690995 147691662 GCCAGAAGAGTTTATCCAGAG 58 147690920 147690938 TCCAGCATCTCATACACCC 59 NA Rattus norvegicus 81 AABR07025743.1 ENSRNOG00000033638 ENSRNOT00000041833 3 1 1 60 16 47756696 47756716 AATGAATCCTCAGAAGATGGG 58 47756654 47756672 AAGTCTCTGATGAGGCAGC 60 NA DesignNoJunction Rattus norvegicus 81 Rcbtb1 ENSRNOG00000021712 ENSRNOT00000037800,ENSRNOT00000081373 1 2 2 80 15 39645005 39645025 TTGGTCAAACAAGTGGTTGAG 59 39645063 39648854 CCAAGCAAATAACTCTCCATCAG 60 NA Rattus norvegicus 81 Cramp1l ENSRNOG00000024635 ENSRNOT00000022050 3 1 1 80 10 14345782 14345801 ATTACAACCACGGAACAACC 59 14344792 14345740 AGCTCCACAATCATCCTGAG 60 NA Rattus norvegicus 81 Timp1 ENSRNOG00000010208 ENSRNOT00000013745 2 1 1 80 X 1368541 1368561 TGATAGCTTCCAGTAAAGCCT 59 1366692 1368500 CCCTTATAACCAGGTCCGAG 59 NA Rattus norvegicus 81 Gpam ENSRNOG00000015124 ENSRNOT00000083215,ENSRNOT00000047903,ENSRNOT00000092170 2 3 3 80 1 275866081 275866099 TGCCACAACATCAAAGCTC 59 275862946 275866040 AAGCTTGTGAATCAAGGTACTG 59 NA Rattus norvegicus 81 Polrmt ENSRNOG00000024879 ENSRNOT00000039232 3 1 1 82 7 12850547 12850665 CATGATGAACGAGGTATGCC 59 12850710 12850728 TCTCCAGGAACTTAGCCAG 58 NA Rattus norvegicus 81 RGD1564308 ENSRNOG00000038819 ENSRNOT00000059317 2 1 1 80 16 49492744 49492763 CAGGGACAAATATCAGCCAC 59 49492805 49492915 ACATTGGCATAACCGTATCC 58 NA Rattus norvegicus 81 Csrp1 ENSRNOG00000008937 ENSRNOT00000011991 1 1 1 80 13 52563741 52563761 AGACAGTCTACTTTGCTGAGG 60 52563803 52568523 TCTTGCAAACCATGCACAG 59 NA Rattus norvegicus 81 Dtx4 ENSRNOG00000021086 ENSRNOT00000083283,ENSRNOT00000028626 3 2 2 81 1 228745423 228745441 GGAAAGCTGTCGAAGTGTG 59 228741582 228745379 AACTTCCATCCTTGTTCCCA 59 NA Rattus norvegicus 81 Celf4 ENSRNOG00000014503 ENSRNOT00000061151 2 1 1 82 18 17702197 17702216 CTGTAACCTGCTCATCTACC 58 17698990 17702152 CCACAAACTCGAAAGGGAG 59 NA Rattus norvegicus 81 Smyd4 ENSRNOG00000026783 ENSRNOT00000029866 1 1 1 80 10 62221043 62221063 ACTGAGGACATTTCATTGTGC 59 62221102 62223782 GTCTTTAAGACATGCTTCATGC 58 NA Rattus norvegicus 81 Reg3b ENSRNOG00000006151 ENSRNOT00000008212 1 1 1 81 4 109468557 109468577 CATCCATGGTCAAGAACACTG 59 109468620 109469212 TTGGGTTCTCCACCAAGAG 59 NA Rattus norvegicus 81 Olr1204 ENSRNOG00000051111 ENSRNOT00000076868 2 1 1 60 8 40489419 40489437 AATGTAACAATGCCCACCC 58 40489457 40489479 GGATATTGGAAAGGATCAAGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910109 ENSRNOG00000031244 ENSRNOT00000051207 3 1 1 60 18 4371262 4371280 ACAGGTGAACTCGGAAGAC 59 4371220 4371240 ATTGGTCCTAATAGCTTCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bean1 ENSRNOG00000013301 ENSRNOT00000064781,ENSRNOT00000017774 3 2 2 88 19 949940 951687 TTCTCCACCAGGCTATGAG 59 949870 949888 CTGTCATCGAGTAGGGTGG 59 NA Rattus norvegicus 81 Reep1 ENSRNOG00000008481 ENSRNOT00000064772 1 1 1 85 4 99681305 99681326 GTCAAATGGATGATGTACTGGA 58 99681372 99696931 AATGGAAACCAGCAAAGGA 58 NA Rattus norvegicus 81 Glt1d1 ENSRNOG00000000961 ENSRNOT00000064526 1 1 1 80 12 32698466 32709794 CAGCAATCAGAGATCGACC 58 32698404 32698422 AGGATCCTTCACTGGTCTG 58 NA Rattus norvegicus 81 AC094516.1 ENSRNOG00000057064 ENSRNOT00000082938 1 1 1 60 15 28128238 28128259 GTAACGAGATGATGAAGAGCAG 59 28128280 28128298 AAGGTGTTCATGGACTTGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680656 ENSRNOG00000042062 ENSRNOT00000065877 3 1 1 61 5 173140122 173140140 CAGCTATGCAGGAGATCGT 59 173140165 173140183 CAGCATGACACAGATGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir676 ENSRNOG00000061112 ENSRNOT00000090243 1 1 1 60 X 70207031 70207049 GACTCTGCAACCTTAGGAC 58 70207073 70207091 ATAGCTCGACAAGCTCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mt3 ENSRNOG00000018958 ENSRNOT00000025669 2 1 1 81 19 11324920 11325779 CGAACTGCAAGAAGAGCTG 59 11324857 11324875 TCTTCGCCTTTGCAAACAC 60 NA Rattus norvegicus 81 AABR07058968.1 ENSRNOG00000047477 ENSRNOT00000074622 1 1 1 80 7 145574296 145574315 TCTGATGGAACTAGTGATGC 57 145573192 145574254 AGCCAATTCAATCAATGCTG 57 NA Rattus norvegicus 81 Rxrb ENSRNOG00000000464 ENSRNOT00000084638,ENSRNOT00000087895 1 2 4 80 20 3827670 3827864 CATACTGTTTAACCCAGACGC 59 3827905 3827924 AGTGAGGCATACACCTTCTC 59 NA Rattus norvegicus 81 Olr1610 ENSRNOG00000047419 ENSRNOT00000016721 2 1 1 60 15 27076763 27076782 TGCAGGCCTTTACATTACTC 58 27076722 27076742 CCAACAACATCACATAGCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564688 ENSRNOG00000038610 ENSRNOT00000058917 2 1 1 60 11 72109566 72109584 CATGTTTGTGGTGGGTGTG 60 72109524 72109543 ATTGCTGACAATCTTGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dusp1 ENSRNOG00000003977 ENSRNOT00000005383 2 1 1 90 10 16972104 16972387 CTTTATAGACTCCATCAAGGATGC 59 16972436 16972454 GTAAGCAAGGCAGATGGTG 59 NA Rattus norvegicus 81 Rpe65 ENSRNOG00000009582 ENSRNOT00000078187,ENSRNOT00000051951 2 2 2 80 2 266146429 266146447 TGTTTGATGGACAAGCCCT 60 266146491 266153478 CAGTGCGGATGAATCTCCT 60 NA Rattus norvegicus 81 Ecd ENSRNOG00000042253 ENSRNOT00000008553 3 1 1 80 15 4414610 4417897 GGAATGACTACTTTAAGGGACTG 59 4417935 4417955 GCTGGAAATAGTTCTTTGCCA 59 NA Rattus norvegicus 81 Rn60_10_0701.5 ENSRNOG00000032135 ENSRNOT00000043306,ENSRNOT00000077017 3 2 2 60 10 70424381 70424399 AAGAAGTTCCTGCAACCTG 58 70424339 70424359 TGTCATCATAGTGACCATCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1414 ENSRNOG00000026714 ENSRNOT00000029524 2 1 1 60 10 43912083 43912101 CTGACTCTTTCCACACTCC 58 43912041 43912062 GTGAAGATGGTGTTAATCATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Map3k2 ENSRNOG00000014089 ENSRNOT00000060996 2 1 1 80 18 25019119 25023475 AGAGACATCAAAGGAGCGA 58 25023519 25023537 AAGTCGTTTGCTAGCTCCA 59 NA Rattus norvegicus 81 Sap130 ENSRNOG00000016773 ENSRNOT00000022761 1 1 1 80 18 24449137 24458708 CAAATATCCCAGTTGCTAAGGT 59 24458749 24458767 TCTCGGAAGGGTAATCAGG 58 NA Rattus norvegicus 81 Itgb4 ENSRNOG00000005580 ENSRNOT00000065339,ENSRNOT00000086747 3 2 2 80 10 104533424 104533444 TGCCAAACACAACATTATCCC 60 104533481 104533789 GGGAAATATTTATGGAGCTTCTCG 60 NA Rattus norvegicus 81 Smim22 ENSRNOG00000042344 ENSRNOT00000066754 1 1 1 112 10 10767363 10767381 AGGAAGCAGTGTGAGTTCC 60 10766970 10767288 CATCTCAGCTACCTCCTCTC 59 NA InUTR Rattus norvegicus 81 Gp1bb ENSRNOG00000046981 ENSRNOT00000040954 3 1 1 201 11 86521035 86521053 AGTAGGCCTCCATCCTCTC 60 86521448 86521467 CAATTCTGTAGTGTCGGGAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Lin28a ENSRNOG00000060320 ENSRNOT00000077165 2 1 1 80 5 152235374 152235393 TTCTGTATTGGGAGTGAGCG 60 152233362 152235332 ACAGTTGTAGCACCTGTCTC 60 NA Rattus norvegicus 81 Olr1565 ENSRNOG00000048434 ENSRNOT00000044043 1 1 1 60 11 85159328 85159346 ACCATCCTGACACCTACAC 59 85159369 85159388 TGAGGACATCCTTATTCCGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1569 ENSRNOG00000050293 ENSRNOT00000057990 1 1 1 60 11 85313526 85313547 ATGCCCTTCATATTCCTTACTG 58 85313487 85313507 GGAACATCACAGAAGAAATGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103690024 ENSRNOG00000049203 ENSRNOT00000071625,ENSRNOT00000073341 3 2 2 80 4 156993829 156993850 GGAGTATCTGGAACAGTCTGAG 60 156993353 156993788 TCATCGTACCATCGGTCAG 59 NA Rattus norvegicus 81 LOC100360654 ENSRNOG00000045963 ENSRNOT00000047422 1 1 1 60 17 42168420 42168439 CTAAGAGGCGAAACACTACC 58 42168458 42168480 CTTCGGTAGACAATCTTTAGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prom2 ENSRNOG00000014710 ENSRNOT00000020354 3 1 1 80 3 120100240 120100259 TCTGGAAGGTTCTACAGCTC 59 120098370 120100200 GCTGAAGCTTATGGGTATACTG 59 NA Rattus norvegicus 81 Crtap ENSRNOG00000009878 ENSRNOT00000074238 2 1 1 80 8 122398416 122401659 TACTTCAAGGCCAATGACC 57 122398354 122398372 CATCATCTCGTCCTCAGGA 58 NA Rattus norvegicus 81 Xpot ENSRNOG00000007088 ENSRNOT00000009645 2 1 1 80 7 63708723 63708743 GTTCTTTGAAACTGTCGTTCG 59 63708217 63708684 AAGAAAGCCATTAGTACACAGG 59 NA Rattus norvegicus 81 Rev3l ENSRNOG00000000593 ENSRNOT00000057227,ENSRNOT00000077936 3 2 2 80 20 44879986 44880007 GAGTACCTGTGAGTTAGAAGTG 58 44880048 44881293 TTTCCACCAATTTGAGCCT 58 NA Rattus norvegicus 81 LOC100912481 ENSRNOG00000046950 ENSRNOT00000057382,ENSRNOT00000086607 3 2 2 80 4 24628277 24628295 TCAGACTGGATCCTACAGC 58 24628339 24629459 TGTCGGAATGAACTCTGCT 59 NA Rattus norvegicus 81 Usp36 ENSRNOG00000028255 ENSRNOT00000064450,ENSRNOT00000084055 1 2 2 80 10 107307919 107310249 GATCACCAAGGATGTTGGC 59 107307857 107307875 TACATGACAGGGTCTCCAC 58 NA Rattus norvegicus 81 Trpm4 ENSRNOG00000020714 ENSRNOT00000041513 3 1 1 81 1 101298703 101298721 TCCTCATCGTCTTCTTGCT 58 101295618 101298660 ACTTTGTTGAAGGTGTAGCTG 59 NA Rattus norvegicus 81 Ost4 ENSRNOG00000008605 ENSRNOT00000077903 2 1 2 86 6 26836276 26836422 GCTAGTCAGGATGATCACG 58 26836472 26836490 TGATAGAGGACCACAAGCA 58 NA InUTR Rattus norvegicus 81 Ost4 ENSRNOG00000008605 ENSRNOT00000077903,ENSRNOT00000011373 1 2 2 83 6 26836482 26836500 CCTCTATCACTACGTGGCA 59 26836547 26837210 CTATGTCCTGGAAGCCTGG 60 NA InUTR Rattus norvegicus 81 RGD1565317 ENSRNOG00000023182 ENSRNOT00000017230 2 1 1 60 10 66509171 66509190 CCCAGATCAAAGCTCATGTG 59 66509213 66509231 AGCACGACTTGATCTTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtf3c6 ENSRNOG00000000586 ENSRNOT00000000716 1 1 1 95 20 45353034 45353156 ATATGAAGATACTCTTGGGACCTG 60 45350428 45350447 CATTTGTACTTCAGCACCGT 59 NA Rattus norvegicus 81 Lbx2 ENSRNOG00000008466 ENSRNOT00000011189 3 1 1 171 4 114784621 114784639 ACTTTCCAGGGCCATTCTC 60 114785842 114785862 CCAAGTACTTCTGGAAGACGA 60 NA DesignNoJunction Rattus norvegicus 81 Zfp280c ENSRNOG00000006797 ENSRNOT00000044435 1 1 1 80 X 135372273 135372292 TAGACCGTATGGCTAAACAC 57 135372069 135372233 CGGTTCTTTCAGTAACATTCTC 58 NA Rattus norvegicus 81 Hsd3b1 ENSRNOG00000019441 ENSRNOT00000026306 3 1 1 89 2 202343837 202343855 CTGTTGTCATCCACACTGC 59 202342548 202343787 TCTGGGTACCTTTCAGATTGAC 60 NA Rattus norvegicus 81 Mettl25 ENSRNOG00000027451 ENSRNOT00000038144 3 1 1 80 7 47865621 47885054 TATGGCATCAGCAAATGTGAG 59 47865561 47865581 AGACACTCTGACATACTCCAG 59 NA Rattus norvegicus 81 LOC690045 ENSRNOG00000061895 ENSRNOT00000081854 1 1 4 80 4 163757492 163757512 GATCCAATGTAAACAAGCCTG 58 163754531 163757452 TGAAGGAACTTCAGTTCATCG 58 NA Rattus norvegicus 81 Dact3 ENSRNOG00000052256 ENSRNOT00000084601 3 1 1 85 1 78808911 78810283 GAGACCCAAGTCCTTAGGC 60 78810332 78810350 GAGCTGAGAAGGATCGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Acadm ENSRNOG00000009845 ENSRNOT00000013238 3 1 1 80 2 260143120 260145819 TTAGCTTCGAGTTGACGGA 59 260143058 260143076 CGACCGGGATTATTTCCTC 58 NA Rattus norvegicus 81 AC229945.1 ENSRNOG00000056748 ENSRNOT00000074379 2 1 1 80 5 79894287 79894310 GAGATTTCACCTCACATGCG 59 79894226 79894245 TCCTCTTTCTCCACATCCTC 59 NA Rattus norvegicus 81 Camk4 ENSRNOG00000020478 ENSRNOT00000078822 3 1 2 109 18 25962966 25963096 TCCCTGAGGTCAAGAAACTC 59 25963168 25963186 CATGTGGACAAAGTTGGCT 59 NA InUTR Rattus norvegicus 81 Ampd3 ENSRNOG00000018262 ENSRNOT00000024933 3 1 1 80 1 175622014 175622854 ACCTCTTCCTTAAATACGTGAC 58 175622894 175622913 TCTTGTCTGAGAACATGTGG 58 NA Rattus norvegicus 81 Mir101a ENSRNOG00000035599 ENSRNOT00000053722 1 1 1 60 5 120168486 120168504 GCTCAGTTATCACAGTGCT 58 120168444 120168467 CTTCAGTTATCACAGTACTGTACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir101a ENSRNOG00000035599 ENSRNOT00000053722 3 1 1 60 5 120168488 120168506 TGGCTCAGTTATCACAGTG 57 120168446 120168467 TCAGTTATCACAGTACTGTACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem191c ENSRNOG00000001864 ENSRNOT00000002546 3 1 1 115 11 87977020 87977039 AACATCCCGAGCTATTCGAG 60 87976845 87976942 GATTGTGTTGCTCCAGGTC 59 NA Rattus norvegicus 81 Cd163l1 ENSRNOG00000018978 ENSRNOT00000049269 1 1 1 80 1 212701027 212701173 TCTGTTCAGGACTCCAAGAC 59 212701214 212701234 CATTCAGGGAAATCTCTACGC 59 NA Rattus norvegicus 81 Hic2 ENSRNOG00000051458 ENSRNOT00000079595 2 1 1 93 11 87994883 88016685 CACATGAGGTAACCAGGCT 59 87994808 87994826 CAGAAACCATGTGAGCAGC 60 NA InUTR Rattus norvegicus 81 Shank2 ENSRNOG00000050206 ENSRNOT00000071484,ENSRNOT00000075078,ENSRNOT00000071741 1 3 3 81 1 217428399 217459834 CTTTGATGCTGCCAGTGAC 60 217459879 217459897 CACAAATCCAAAGCCCTCG 60 NA Rattus norvegicus 81 Pigh ENSRNOG00000010914 ENSRNOT00000014775 3 1 1 80 6 102268136 102268154 GGCAAAGAAAGTACCACCT 58 102266271 102268094 GACCTTCTGCATGTAAATAGC 57 NA Rattus norvegicus 81 LOC100360611 ENSRNOG00000033115 ENSRNOT00000051772 2 1 1 60 11 82416229 82416250 CAAGTTAAAGGCAAGATTCTGG 58 82416269 82416289 AGTGCTTGATGTACTCAATCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560687 ENSRNOG00000004662 ENSRNOT00000042108 2 1 1 60 7 15386241 15386259 ACCTCTGTGACTTCTTGGA 58 15386282 15386301 ATCTTCTTGCTGAGCTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1461 ENSRNOG00000047410 ENSRNOT00000040081 1 1 1 60 10 45160052 45160070 TACTTGCTCCTCTCACCTG 58 45160092 45160112 GTACACAAAGCTTCCAGTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd2 ENSRNOG00000013840 ENSRNOT00000018890 1 1 1 80 1 261286525 261288169 CACCTGTGATGAGTTCCGT 60 261288209 261288231 TCCAGAAGTTTCTCCAGTATCTC 59 NA Rattus norvegicus 81 Themis ENSRNOG00000014979 ENSRNOT00000020102 1 1 1 80 1 17337440 17337460 TTTGTGAGGGTGATATTGGAG 58 17299907 17337399 TGACCTTAAAGAGACCTGGA 58 NA Rattus norvegicus 81 Brd8 ENSRNOG00000020340 ENSRNOT00000087968,ENSRNOT00000048752 3 2 2 80 18 27403387 27403405 TATGCCAATGTGTTCCTGC 59 27402832 27403343 CAAATCCATAGGCCTCTGC 58 NA Rattus norvegicus 81 Unc13d ENSRNOG00000007439 ENSRNOT00000087759,ENSRNOT00000010466 3 2 2 83 10 104618317 104618337 CTGATGAAATTCCTGGAGGTG 59 104617291 104618272 CAGTAGAGTCAGGAGGCTG 59 NA Rattus norvegicus 81 Dbn1 ENSRNOG00000014170 ENSRNOT00000019569,ENSRNOT00000019393 1 2 2 80 17 9692833 9693020 CAAGCCTCCAGAAATCGAC 59 9693064 9693082 TAATCACCACCCTCGAAGC 60 NA Rattus norvegicus 81 Adi1 ENSRNOG00000008950 ENSRNOT00000011951 3 1 1 82 6 47940338 47942971 ATTGGAAGCTAGATGCGGA 59 47943015 47943035 ATCCATCCATGAGTAGTTCCT 58 NA Rattus norvegicus 81 Ak5 ENSRNOG00000046947 ENSRNOT00000072048 2 1 1 80 2 257850807 257850829 CAGAGCTGATAGAAGAGTATGAG 58 257849391 257850767 TTCCTGGACCACCTATGAC 58 NA Rattus norvegicus 81 Cpsf6 ENSRNOG00000005927 ENSRNOT00000008193 2 1 1 80 7 60401828 60401847 TCATGAATAGAAATCGGGCA 57 60400670 60401785 CACTCCCATAATCACCAGC 58 NA Rattus norvegicus 81 Ogfod2 ENSRNOG00000001081 ENSRNOT00000001433 1 1 1 89 12 37909548 37909936 ACTCTTGGAGGAGCTTGAG 59 37909477 37909495 TAAGAGCTGGCGATGACAG 60 NA Rattus norvegicus 81 Cyp4f37 ENSRNOG00000050888 ENSRNOT00000065282 2 1 1 80 7 13883717 13883738 TCTTGGAGTCCAAGACTAAGTC 59 13883777 13884457 TTCCATGTTCATCCTTAGCCA 60 NA Rattus norvegicus 81 Cct6a ENSRNOG00000000923 ENSRNOT00000001227 1 1 1 80 12 30495241 30495261 CTCTGAACTCCTTTGATGACC 59 30494925 30495202 TCTCCTCACCCAATGTATACTC 59 NA Rattus norvegicus 81 Rn60_X_0719.1 ENSRNOG00000051060 ENSRNOT00000076595 3 1 1 60 X 71042867 71042885 AGACCTACAGCTACCTGAC 58 71042825 71042846 TAAGGAGACTTGATGAACACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065217.2 ENSRNOG00000042542 ENSRNOT00000039910 3 1 1 60 6 115769724 115769742 GTATCCACTAGTGCTGCCA 59 115769682 115769703 GGAAGACCATGTTAGTAAGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Set ENSRNOG00000034241 ENSRNOT00000051397 2 1 1 196 19 58419986 58420638 CTAAGTCTGGAAGCCATGG 58 58420797 58420816 GCTTGTTCATTAAGCCTGTC 58 NA InUTR Rattus norvegicus 81 Zcchc8 ENSRNOG00000001243 ENSRNOT00000001668 3 1 1 80 12 38323505 38323525 CTAACAGTCCAAAGAAGCAGC 60 38323563 38324501 TCTCTATATCTGAGTCAAGCTCC 59 NA Rattus norvegicus 81 Sct ENSRNOG00000017873 ENSRNOT00000024094 1 1 1 90 1 214265052 214265174 TACAGGATTGGCTTCTGCC 60 214264980 214264998 TCTGAATGGTCGACAGCAG 60 NA Rattus norvegicus 81 Gnpat ENSRNOG00000019205 ENSRNOT00000026617 3 1 1 80 19 57636399 57637135 ACACTCAGGGACTTTGAGG 59 57637179 57637197 GAGGATGATGTCCTTCCCA 59 NA Rattus norvegicus 81 LOC102550456 ENSRNOG00000024616 ENSRNOT00000001869 3 1 3 82 12 21745298 21745319 CGTAGTCAATTCAGTTTCTACG 57 21740526 21745258 TACTCATAGAAGACTTCCACCT 58 NA Rattus norvegicus 81 Cenpv ENSRNOG00000003086 ENSRNOT00000004127 2 1 1 80 10 48848910 48855750 CTTCAAACTCCTGAAGGGTG 59 48848849 48848868 CTCTTACAGAAGGTGTGCTG 58 NA Rattus norvegicus 81 B3gnt5 ENSRNOG00000046258 ENSRNOT00000071848 3 1 1 82 11 84930939 84931095 AGTTTGTTGTACTCGGCTC 58 84930875 84930893 TCACAGCCAATCTTAAGGG 57 NA InUTR Rattus norvegicus 81 Rabgap1 ENSRNOG00000009402 ENSRNOT00000013378 3 1 1 80 3 21812442 21813687 AGATCCAGGACTTGGAACAC 60 21813729 21813748 GTGTTCGGTTAAACCAGGTC 59 NA Rattus norvegicus 81 Mrps28 ENSRNOG00000032630 ENSRNOT00000046368 3 1 2 60 2 95079026 95079046 ACATGAACGCCATAGAAATCG 59 95080570 95080590 TGAAGACTTTCAGGAAGAACC 58 NA DesignNoJunction Rattus norvegicus 81 Mtnr1b ENSRNOG00000008972 ENSRNOT00000011883 1 1 1 91 8 14373621 14373639 CATTGTCACCACAGCTGTG 60 14363109 14373567 ATAAATTACCTGCGTTCCGC 59 NA Rattus norvegicus 81 Igsf3 ENSRNOG00000023851 ENSRNOT00000080176,ENSRNOT00000018895 3 2 2 81 2 203828156 203832078 CATCACAGCCCTTGAAACG 60 203832123 203832141 CAAGTCAAAGGAGTCGCTG 59 NA Rattus norvegicus 81 Cdc25c ENSRNOG00000024008 ENSRNOT00000037368 1 1 1 80 18 27540260 27540278 GCTAGAAGACCAAGAAGGG 57 27536343 27540216 TTCAGACTTAAGCCCTTGG 57 NA Rattus norvegicus 81 Hyou1 ENSRNOG00000010944 ENSRNOT00000044613 1 1 1 80 8 48704632 48704811 CACATGGCACAGATTGAAGG 60 48704854 48704872 ACACAGCTCCTCAAACTCC 60 NA Rattus norvegicus 81 Nme5 ENSRNOG00000020118 ENSRNOT00000027244 1 1 1 80 18 27363710 27363729 ATTTGTACGTAGCACCAACC 59 27357954 27363669 CAAGCCAGATGTAAGGATCTG 59 NA Rattus norvegicus 81 Cldn17 ENSRNOG00000027691 ENSRNOT00000032663 3 1 1 60 11 28477808 28477826 CGTTCTGATTCCAGTGTCC 58 28477766 28477785 GGTTGGGTCGTAGAAATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim34 ENSRNOG00000042686 ENSRNOT00000055210 3 1 1 80 1 169437533 169438074 AATGTCAGGAGAATCTCCAGG 59 169438113 169438134 TGATGTCAGCTTCAAATGTCTC 59 NA Rattus norvegicus 81 Vom2r15 ENSRNOG00000029458 ENSRNOT00000042466 2 1 1 80 1 62668492 62676245 AGGTTCACAGATGCTGACC 60 62668430 62668448 GCTGGCATTCCATTCTTCC 59 NA Rattus norvegicus 81 Ebf4 ENSRNOG00000007408 ENSRNOT00000028816 1 1 1 80 3 122881154 122881173 TAGTAGAAGTGACCCTCTCC 57 122881216 122882621 CATTCAGGGCTGTGTAGAC 58 NA Rattus norvegicus 81 Uchl1 ENSRNOG00000002343 ENSRNOT00000003248 2 1 1 80 14 43137886 43140369 GCTGGAATTTGAGGATGGA 58 43137824 43137842 CACTTGGCTCTGTCTTCAG 58 NA Rattus norvegicus 81 Fam13b ENSRNOG00000020384 ENSRNOT00000027663 3 1 1 80 18 27238144 27238729 AAAGAAATAGCAAGCCCTCCT 60 27238084 27238107 GTAACTTTGTAAGCTCTGTCATCC 60 NA Rattus norvegicus 81 Giot1 ENSRNOG00000051563 ENSRNOT00000080491 2 1 1 82 7 13108643 13108664 GAATCCTTCCCAGAAGAATCTC 58 13108376 13108603 TGTTCCATTTGTAGCCTATAGC 58 NA Rattus norvegicus 81 Tsga13 ENSRNOG00000011108 ENSRNOT00000015134 1 1 1 80 4 58206919 58208113 GTCCATCCAAATATGGCCC 58 58206857 58206877 GGTCTTCTTCCTTTGAGTCAG 58 NA Rattus norvegicus 81 Pcdh7 ENSRNOG00000012367 ENSRNOT00000049245 3 1 1 85 14 55078425 55078446 CAGGAGACAACATTTCAATTGG 58 55072609 55078379 TACACGCATCTGTTTGCTG 59 NA Rattus norvegicus 81 Prkcz ENSRNOG00000015480 ENSRNOT00000021285 2 1 1 80 5 172693299 172694562 AGGAGGCATATGGATTCTGTC 60 172693239 172693259 TTCTGAAGGAAGGTCTACACC 59 NA Rattus norvegicus 81 Olr1558 ENSRNOG00000047976 ENSRNOT00000048343 3 1 1 60 11 43687511 43687529 CAAGAAGCTCTCCCTTCAG 58 43687552 43687571 CAAGGAATGCAGGTTACTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lpar3 ENSRNOG00000015260 ENSRNOT00000020656 1 1 1 80 2 252115080 252157452 CTGTCTTAGGAGCCTTCGT 59 252157496 252157514 TACACTGCTTGCAGTTCAG 58 NA Rattus norvegicus 81 Dll3 ENSRNOG00000019338 ENSRNOT00000026182 1 1 2 167 1 85489179 85489197 GTTGCACTTCTCATACCGC 59 85489327 85489478 CGACATACGGTTAGGGACTC 60 NA Rattus norvegicus 81 Psma6 ENSRNOG00000007114 ENSRNOT00000084062,ENSRNOT00000009666 1 2 2 80 6 76200475 76200493 CAGAGTCAACCAGCTTCCT 59 76200536 76202311 TGATTGCAGTTTCCACTGTC 59 NA Rattus norvegicus 81 Slfn5 ENSRNOG00000021719 ENSRNOT00000035730 1 1 1 61 10 70303562 70303580 GTGTTATGAAGCCGCTGAC 59 70303605 70304886 CTCTGGGTTGGTTTCTGTC 58 NA DesignNoJunction Rattus norvegicus 81 Pde6b ENSRNOG00000000065 ENSRNOT00000000077 3 1 1 80 14 2333124 2333344 ACCAGATGAAATCTCAGAATCC 58 2333065 2333083 ACTTCCCAAACTCCAAGTG 58 NA Rattus norvegicus 81 Ybx3 ENSRNOG00000005480 ENSRNOT00000007427,ENSRNOT00000068185 3 2 2 80 4 165622665 165625304 TGTTTGTACACCAGACTGC 58 165622603 165622623 ACTCTACAGTTTCTCCATCCC 59 NA Rattus norvegicus 81 Chrna10 ENSRNOG00000020293 ENSRNOT00000027507 3 1 1 80 1 167209741 167210109 GATCATTGATATGGATGAACGG 57 167209682 167209700 TGTAGGTAGGCATCTGTCC 58 NA Rattus norvegicus 81 Ccdc39 ENSRNOG00000011440 ENSRNOT00000065469,ENSRNOT00000084521 3 2 2 80 2 120281288 120281310 CCTCTCATTTCAACTTCGTAAGG 60 120281105 120281248 CTGAGTCTTCCACACTGCT 59 NA Rattus norvegicus 81 Ispd ENSRNOG00000006199 ENSRNOT00000078548,ENSRNOT00000008312 3 2 2 84 6 56011015 56011486 GTGTGAATGTTGTGTCCTCTG 60 56011531 56011550 GGATACAGAAGAGGAAGGCT 59 NA Rattus norvegicus 81 Kynu ENSRNOG00000029993 ENSRNOT00000043533 1 1 1 80 3 28558072 28564918 TGCCAGTTTAGAGATCTTTCAG 58 28564957 28564977 TATTCCAGATAACCTGTCAGC 57 NA Rattus norvegicus 81 LOC100911456 ENSRNOG00000047911 ENSRNOT00000075212 2 1 1 80 5 164553558 164553835 CAGCATCAGAGTCAAACCTG 59 164553497 164553516 AGGAAGCAGAAGTCTCTTGG 60 NA Rattus norvegicus 81 Lum ENSRNOG00000004610 ENSRNOT00000006109 2 1 1 87 7 38820074 38822444 AGAGTAAGGGCACAGAGGA 60 38822494 38822513 TATTGGCCACTGACACTACC 60 NA InUTR Rattus norvegicus 81 AABR07065877.1 ENSRNOG00000053487 ENSRNOT00000071876 3 1 1 60 6 143536845 143536864 GAGGTACAGGCTACAATGAG 58 143536804 143536823 GAGGATTTGCCTTCAGTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cecr6 ENSRNOG00000046851 ENSRNOT00000074558 3 1 1 63 4 153027165 153027185 CATCTACTCCATCGCTTTCAC 59 153027122 153027140 GAGGTCCAGGATGGATGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhl22 ENSRNOG00000001878 ENSRNOT00000068711,ENSRNOT00000091675 1 2 2 80 11 87699133 87699153 TTCGTGTACTTAATTGGAGGG 58 87699195 87706346 GTGTCTTGGGTCATACCTC 57 NA Rattus norvegicus 81 AABR07062206.1 ENSRNOG00000051489 ENSRNOT00000071421 1 1 1 80 4 165024550 165024568 CTTCAGGCTTACAGAACCA 57 165022987 165024507 AGAGGACTGAACACTTTCTG 57 NA Rattus norvegicus 81 LOC100359993 ENSRNOG00000048458 ENSRNOT00000089454 1 1 2 60 6 139636923 139636941 ATGGACAGTCTGAGGTCTG 58 139636617 139636900 ACAATGATGTGTCTGTTGCA 58 NA DesignNoJunction Rattus norvegicus 81 Kif3c ENSRNOG00000011394 ENSRNOT00000015820 2 1 1 80 6 27794581 27813450 CCAGCTGGAGTGAATAACAG 58 27813493 27813511 AGCATACTGGCTGATAGGT 58 NA Rattus norvegicus 81 Tns2 ENSRNOG00000010588 ENSRNOT00000074212 3 1 1 80 7 143720199 143720219 GCATCACTTTCTCTAGCACTG 59 143720359 143720470 CGAAACCAAAGATCTTGGAGG 59 NA Rattus norvegicus 81 P2rx7 ENSRNOG00000001296 ENSRNOT00000001746,ENSRNOT00000079201 2 2 2 80 12 39374346 39375609 GACCCACAAAGTAAAGGAATCC 59 39374287 39374306 CCAGGCAAAGATTTCACAGG 60 NA Rattus norvegicus 81 Gnb5 ENSRNOG00000047799 ENSRNOT00000011963,ENSRNOT00000075708 3 2 2 82 8 82272010 82272935 CACTACTAACAAGGAGCACG 58 82272980 82272998 CAATGGCACATCCTGATGG 59 NA Rattus norvegicus 81 Elfn2 ENSRNOG00000007934 ENSRNOT00000010609 2 1 1 60 7 119894502 119894520 CTCTAAGCGAGACTCCACC 59 119894460 119894484 GGAATACCCTGAGTAATAATGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdcd2 ENSRNOG00000001490 ENSRNOT00000002040 3 1 1 80 1 57514239 57514258 ATGAATCCAAGGAGGATCAC 57 57513378 57514197 TTCCATACCTGAGAATCTGC 57 NA Rattus norvegicus 81 Spry1 ENSRNOG00000025371 ENSRNOT00000067034 2 1 2 87 2 124403437 124403455 CGATTCTGTCCCTAGACCA 58 124403506 124404688 AACTGTGTTGGTCTTCTCG 58 NA Rattus norvegicus 81 Zbtb3 ENSRNOG00000019461 ENSRNOT00000026321 2 1 1 86 1 224998304 224998613 GTTGGAGGACTCACTGGAG 59 224998663 224998681 ACTGTGTTCTGGGAACTCC 59 NA InUTR Rattus norvegicus 81 Tgfbr1 ENSRNOG00000007036 ENSRNOT00000009452,ENSRNOT00000081090 2 2 2 80 5 63110340 63110358 ACGTGCTGACATCTATGCA 60 63110402 63111627 TAGTCTTCGTGGATTCCGC 60 NA Rattus norvegicus 81 Fdx1l ENSRNOG00000023020 ENSRNOT00000028127 3 1 1 68 8 22087018 22087036 TACCACCTCCTGAGGAGAG 59 22086870 22086888 GTCTCGAGTTCTCCTGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Rpl8 ENSRNOG00000048456 ENSRNOT00000075451 2 1 1 80 7 118508934 118509101 GGTGTTGCCATGAATCCTG 59 118509145 118509163 TCTTCGGATAGTGGAAGGC 59 NA Rattus norvegicus 81 Cdc14b ENSRNOG00000018999 ENSRNOT00000079742,ENSRNOT00000033017 1 2 2 80 17 1730158 1730179 TTCAACTGGATAATACCAGAGC 58 1729624 1730117 TTGGTGGTAACCACTTTCC 58 NA Rattus norvegicus 81 Il17re ENSRNOG00000009204 ENSRNOT00000056508 2 1 1 80 4 145424834 145424932 CTTGTGTCCTGATGTCTCC 58 145424976 145424994 ACTACACCCAGTAGAGTGG 58 NA Rattus norvegicus 81 Wdr3 ENSRNOG00000019670 ENSRNOT00000026726 2 1 1 80 2 202459553 202459573 CCATGCCTTGTGAATATGCTC 60 202457791 202459513 TATTTCCTGTCTTTGTCCCGA 59 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000078507,ENSRNOT00000086298,ENSRNOT00000060327 2 3 7 60 20 4096841 4096859 TGCTTGGCCTACATTCCTC 60 4096883 4096901 GAGAATCAGGAGGAGCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp4a2 ENSRNOG00000030154 ENSRNOT00000051252,ENSRNOT00000088209,ENSRNOT00000083686 3 3 3 80 5 134202423 134202441 ACCTTCTGTGAGTCGAGAG 59 134200373 134202382 ATTGTGACTCTGATACCTTTGG 58 NA Rattus norvegicus 81 AABR07004112.1 ENSRNOG00000016498 ENSRNOT00000022127 1 1 1 80 1 125878138 125878157 CTTCCATGGACTCTTACCGA 59 125878194 125878219 CTCCACTCCTTATTAGAATGAACTG 59 NA Rattus norvegicus 81 Pafah2 ENSRNOG00000022288 ENSRNOT00000089070,ENSRNOT00000037097 1 2 2 84 5 152621220 152626006 TGATGACCTTGAAGGGCAG 60 152626053 152626072 AAAGCAAGAATAGCCGTAGC 59 NA Rattus norvegicus 81 Pafah2 ENSRNOG00000022288 ENSRNOT00000089070,ENSRNOT00000037097 3 2 2 87 5 152621220 152626006 TGATGACCTTGAAGGGCAG 60 152626056 152626075 GTCAAAGCAAGAATAGCCGT 59 NA Rattus norvegicus 81 Vom1r105 ENSRNOG00000049645 ENSRNOT00000088379 1 1 2 80 4 122131494 122131513 TCCATCCTGATGCTCATGAG 59 122131552 122178610 CAGATACATAGTTCTTGAGCTGC 59 NA Rattus norvegicus 81 Nr5a2 ENSRNOG00000000653 ENSRNOT00000000812 1 1 1 80 13 53799948 53850874 GGGAACTGAAGGTTGATGAC 59 53799887 53799905 GCCGGTAAATGTGATCCAG 59 NA Rattus norvegicus 81 Ano1 ENSRNOG00000020865 ENSRNOT00000090653,ENSRNOT00000028329 1 2 2 80 1 217782979 217786725 AGAAACAAAGAGACTGACAAGG 59 217782920 217782941 GATGATGGAGACAAGATTGGTG 59 NA Rattus norvegicus 81 Ano1 ENSRNOG00000020865 ENSRNOT00000090653,ENSRNOT00000028329 3 2 2 80 1 217782977 217786723 AAACAAAGAGACTGACAAGGTG 59 217782918 217782939 AAGATGATGGAGACAAGATTGG 58 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000092034,ENSRNOT00000024682 2 2 18 81 1 43637403 43697828 TACAGGGACAGACCTAGACC 60 43697872 43697890 CACAATGGAAGTGCTCCAC 59 NA Rattus norvegicus 81 Thap11 ENSRNOG00000019109 ENSRNOT00000025815 3 1 1 60 19 37826455 37826473 CTCAGCTGGTGGTAGTAGG 59 37826497 37826515 GAGTATGAGTGGTCGGAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Col25a1 ENSRNOG00000050706 ENSRNOT00000074816,ENSRNOT00000071463,ENSRNOT00000075728 3 3 3 86 2 235678555 235680983 TTGATGGAGAACAGGGACTC 59 235681032 235681050 CAGGAAGTCCGATTCCTCC 60 NA Rattus norvegicus 81 Mettl4 ENSRNOG00000026280 ENSRNOT00000037587 3 1 1 80 9 119891073 119891092 CAGATCAGAGGTTGATCGTC 58 119891133 119895353 TGTAGTCTTTCAGAACTTCGG 58 NA Rattus norvegicus 81 Arel1 ENSRNOG00000004382 ENSRNOT00000006240,ENSRNOT00000086545 3 2 2 80 6 108657267 108657285 TTACTGTGAAGCTCGGTGG 60 108652566 108657225 TGGAAGGAACTACCATTCCAG 60 NA Rattus norvegicus 81 LOC100911286 ENSRNOG00000046021 ENSRNOT00000075774 2 1 1 95 X 15425396 15425820 GCTGAGGTACTTGCTAGGG 60 15425319 15425337 AAATCCTGGTCCACAGCTC 60 NA DesignNoJunction Rattus norvegicus 81 Olr813 ENSRNOG00000005412 ENSRNOT00000007168 2 1 1 60 4 72503613 72503631 ATCAAGTCACAGCAAGGTC 58 72503654 72503673 CGACACAGAGATGAGAGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 1190003K10Rik ENSRNOG00000050209 ENSRNOT00000072220 3 1 1 82 17 1999507 1999525 AAAGGAGATCCGCAAACAG 58 1994255 1999463 CTTCTCTGAGCTTTCTCAGAG 58 NA Rattus norvegicus 81 Psat1 ENSRNOG00000013971 ENSRNOT00000082442,ENSRNOT00000083372,ENSRNOT00000018763 2 3 3 80 1 233135110 233138183 TGGACGTTTCCAAGTTTGG 59 233135048 233135066 GGACAATCACTACCGTCAC 58 NA Rattus norvegicus 81 Plac9 ENSRNOG00000011263 ENSRNOT00000014964 1 1 1 80 16 3862585 3862603 GATCTAGCTTGGAGCCCAG 60 3862647 3865019 CTTCTCCACCGTCTCTTCC 60 NA Rattus norvegicus 81 Cep170b ENSRNOG00000033688 ENSRNOT00000030246 2 1 1 80 6 137308146 137308428 GAAGATGAAGATCCTCTTCCAG 58 137308469 137308487 GGTACTTCATTCTCAGCGT 57 NA Rattus norvegicus 81 Rgs21 ENSRNOG00000056369 ENSRNOT00000086610 2 1 1 93 13 61303253 61306761 AGCTAACCAAGCTGGACTG 60 61303178 61303196 GAAGTCTTCACAGGCAAGC 59 NA Rattus norvegicus 81 Thumpd3 ENSRNOG00000006941 ENSRNOT00000009464 2 1 1 80 4 144987173 144987191 GTCATCCTGCAGAATCAGC 59 144987235 144988819 AGACAATGAACCTGAGCCA 59 NA Rattus norvegicus 81 Shc2 ENSRNOG00000008030 ENSRNOT00000010714 1 1 1 86 7 12964718 12964736 CTTTGGAGCTTGAGGACAC 59 12964786 12966460 CTTCAAAGGGTCGCATGTC 59 NA Rattus norvegicus 81 Gbe1 ENSRNOG00000051232 ENSRNOT00000076695,ENSRNOT00000084765 1 2 2 80 11 7265931 7265949 CCGATGGTGGCATATACTG 58 7265991 7300232 GATTCCAACCACTGAATTCTC 57 NA Rattus norvegicus 81 Phf20l1 ENSRNOG00000046527 ENSRNOT00000007564 3 1 1 80 7 108744800 108749037 GAAGTGAGGACTGGATTGC 58 108749081 108749099 TGGTTCGAGGTTTAGACCC 59 NA Rattus norvegicus 81 Ctsr ENSRNOG00000017888 ENSRNOT00000024115 2 1 1 80 17 3886909 3886929 ATTTGATCCCAGTTTGGATGC 59 3886969 3887258 TGTCCTTCTTCCTCCATAGTG 59 NA Rattus norvegicus 81 Anapc1 ENSRNOG00000016965 ENSRNOT00000055875 1 1 1 80 3 121177720 121177864 CAAGTTACCAGATCAAAGAAGGAG 60 121177663 121177681 AGATCATAGCCAGAGCCAG 59 NA Rattus norvegicus 81 Nphp3 ENSRNOG00000048978 ENSRNOT00000014636 3 1 1 80 8 112553881 112555542 AGAATGGATGACACAGATTCTC 58 112555582 112555601 GGATACAGTTCCATCAGCTC 58 NA Rattus norvegicus 81 AABR07060165.1 ENSRNOG00000048544 ENSRNOT00000065546 1 1 1 84 4 60547684 60547789 ACATCCCACAAAGCAAAGG 59 60547618 60547637 GCAGTGTTGTTCCACATCTC 60 NA Rattus norvegicus 81 LOC691113 ENSRNOG00000011713 ENSRNOT00000015807 2 1 1 112 4 100211483 100211814 TATATCAGGACGATGATCCCG 59 100211888 100211906 CTTTGCAAGTTCCTCCTGG 59 NA Rattus norvegicus 81 Olr1406 ENSRNOG00000029930 ENSRNOT00000048759 2 1 1 60 10 36485614 36485632 CCCAATCAGACAGCTACAG 58 36485656 36485674 AGACAACCTCTTCCTGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1536 ENSRNOG00000053715 ENSRNOT00000081508 3 1 1 60 11 45687776 45687798 CTTCTCTTCATGTATCTGCTTCC 59 45687738 45687758 AGTCCATCATGTCTTCATCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf225 ENSRNOG00000038445 ENSRNOT00000058574 3 1 1 84 1 65659508 65659911 AGGTCTACAGGTCCATTCTG 59 65659443 65659461 AACCAGGACTAGAACCCTG 58 NA InUTR Rattus norvegicus 81 Rilpl2 ENSRNOG00000001061 ENSRNOT00000001403 1 1 1 81 12 37551794 37552567 CAGTGCTACAGGAGTGGTC 60 37552612 37552630 TGCCCATGGTAACCATAGC 60 NA Rattus norvegicus 81 Nr1h4 ENSRNOG00000007197 ENSRNOT00000009910,ENSRNOT00000091227 3 2 2 85 7 30078751 30095286 CTGCAAAGGTTTCTTCCGA 58 30078684 30078703 TGTACATATCCATCACGCAG 58 NA Rattus norvegicus 81 Mtcl1 ENSRNOG00000025527 ENSRNOT00000050012 3 1 1 80 9 114606361 114606379 GCAGCACATGATCGAAGTG 60 114550939 114606318 CTCTTCAGAGAACTCTCCCG 59 NA Rattus norvegicus 81 Pik3r5 ENSRNOG00000023428 ENSRNOT00000032785 2 1 1 80 10 55074096 55074114 GGAAACTCCACACGATTCC 59 55074157 55074508 CCTGTAGGATGTCAAAGCTG 58 NA Rattus norvegicus 81 Rn60_1_0436.2 ENSRNOG00000060991 ENSRNOT00000078186 2 1 1 60 1 43533234 43533252 CCGAACTGAACCTATGGAG 57 43533192 43533210 AAGTCACAAACTCAGTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp4 ENSRNOG00000054863 ENSRNOT00000083046,ENSRNOT00000085609 2 2 2 80 8 117140435 117140454 AACACCTATGAGCAGTTGAG 58 117140495 117140645 CTCAATTACTAGCACCTGACC 58 NA Rattus norvegicus 81 Rax ENSRNOG00000016944 ENSRNOT00000022784 3 1 1 76 18 61641265 61641283 TTAACCTACCCGAGGTTCG 59 61638784 61638802 TTCTAGTTTCTCCTGGCGT 58 NA DesignNoJunction Rattus norvegicus 81 Cpa1 ENSRNOG00000010725 ENSRNOT00000014465 1 1 1 80 4 57955378 57955568 GCAAAGAAGATCACCAAAGAC 58 57955609 57955628 AATCTCCAGGAAGATGTCCA 58 NA Rattus norvegicus 81 Spats1 ENSRNOG00000019963 ENSRNOT00000080940,ENSRNOT00000045763 2 2 2 80 9 17930133 17930154 GTTCCCAGAACAGAGTAAAGAG 59 17930193 17931420 TTCTCATAAGGTCCCAGTGAG 59 NA Rattus norvegicus 81 Tspan2 ENSRNOG00000023338 ENSRNOT00000035605 3 1 1 81 2 205184904 205184923 CTGTCTGCTGGTGATATTCG 59 205184964 205186039 TACGTGTCGTATAGCTACATCC 59 NA Rattus norvegicus 81 LOC100910472 ENSRNOG00000004484 ENSRNOT00000005925 3 1 1 94 7 118502749 118503109 ATGCAACTGTGGTTAGGAC 58 118503167 118503185 GATGGTGCAAGTATGGAGC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Myrfl ENSRNOG00000021833 ENSRNOT00000068774 1 1 1 80 7 59800056 59800077 TATATGTTTCCACAGTCAACGG 59 59799673 59800016 CAAATGTGCTGGTATCCCTG 59 NA Rattus norvegicus 81 Slc7a4 ENSRNOG00000001874 ENSRNOT00000002560 2 1 1 80 11 87447296 87447314 GTGCTGTCTTTCTGTCCAG 59 87446954 87447253 CCAAAGGGATCTGGAAAGTG 59 NA Rattus norvegicus 81 Rn60_1_0777.1 ENSRNOG00000031005 ENSRNOT00000046600 2 1 1 80 1 76345676 76345697 ATAACATTGTTGCCAACTCCTG 60 76338597 76345641 CTTGGTATCCTTACCATTCATTCTC 60 NA Rattus norvegicus 81 Baiap3 ENSRNOG00000017893 ENSRNOT00000024072 1 1 1 80 10 14607055 14607073 CGATGATGACGTTTCCCTG 59 14606867 14607014 TTGAAGTATCTGGTCATTCCCT 59 NA Rattus norvegicus 81 Sertad3 ENSRNOG00000037690 ENSRNOT00000057190 3 1 1 60 1 84280978 84280996 TTTGTCGAAGGTAGTCGTG 58 84283424 84283443 TTTCCTCTTTAAGCCTCCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Nasp ENSRNOG00000016454 ENSRNOT00000022170 3 1 1 80 5 135449383 135449406 GTTACAACTCTCAGTATGATGAGG 59 135449222 135449347 GTAGTACAGCCATTCTCTTCTC 58 NA Rattus norvegicus 81 Slc28a3 ENSRNOG00000018853 ENSRNOT00000025745 1 1 1 80 17 6501614 6501634 TTGCTTTCCTTTGTGAACTCC 59 6501674 6502455 ACAAATGAGCTCGAAACTCAG 59 NA Rattus norvegicus 81 Selv ENSRNOG00000051208 ENSRNOT00000087175 3 1 2 86 1 85499565 85499701 GCCTTCGGTACATTCTACTG 58 85499847 85499866 TAACCTGGGTAGCTCTTTCC 59 NA Rattus norvegicus 81 Naa50 ENSRNOG00000039017 ENSRNOT00000068345 2 1 1 80 11 61512198 61513916 AACATCTATCTGCATGTCCAG 58 61512138 61512158 AGTCTCGATAATCTCAAAGCC 58 NA Rattus norvegicus 81 Rn60_1_0913.2 ENSRNOG00000051284 ENSRNOT00000076885 3 1 1 60 1 90131201 90131221 TAAGAACGGCAAGAAGATCAC 59 90131161 90131181 CTCAATGAAGTTCAAGCAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065740.1 ENSRNOG00000061324 ENSRNOT00000073207 1 1 1 60 6 139997266 139997287 TGTACTACTGTACCAGAGACAC 59 139997227 139997248 GGAGAATTCTTTCCAAGTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nup210 ENSRNOG00000005390 ENSRNOT00000008888 1 1 1 80 4 122692805 122692823 TCTCATGCCTGTCTATGCC 59 122687334 122692761 GATACTGGAACCACCTGCT 59 NA Rattus norvegicus 81 Pds5a ENSRNOG00000002541 ENSRNOT00000003437 3 1 1 80 14 44259893 44259911 CTCAGGAACCTTGCTACCA 59 44259951 44260223 GGTAGCACTCATCGTTAATAACC 59 NA Rattus norvegicus 81 Ferd3l ENSRNOG00000011091 ENSRNOT00000014731 1 1 1 60 6 53372157 53372176 TTATGAGAAGAGGCTGTCCA 58 53372197 53372217 GAAAGAAATGTAGACGATGGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_1361.3 ENSRNOG00000012384 ENSRNOT00000016597 3 1 1 60 1 135042312 135042330 GCCTTAAAGGTAAAGGCCA 58 135042270 135042291 CTTCATCTCCATGTGTATCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Foxred2 ENSRNOG00000005749 ENSRNOT00000007598 3 1 1 80 7 119173028 119175516 TTTATGCAGAGTCCTGTTTCCT 60 119172969 119172989 GCATTCTTAGGTATCCCTGCT 60 NA Rattus norvegicus 81 Olr1546 ENSRNOG00000057507 ENSRNOT00000080384 1 1 1 60 11 43455059 43455080 TCATCATGACAAATAGGCTCTG 58 43455100 43455119 ATAAACCCACCTACCAAGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910787 ENSRNOG00000051167 ENSRNOT00000076562 2 1 1 60 8 41285808 41285828 TGGCTTATGATCGTTATGTGG 58 41285850 41285868 GGAGACATAAGAATGGCGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC110981.1 ENSRNOG00000026991 ENSRNOT00000037432 1 1 1 60 11 70688189 70688207 CTTCAACAGCAACTCCCAC 59 70688231 70688249 GTTATTGAGAGCAACGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhoh ENSRNOG00000002540 ENSRNOT00000003425 2 1 1 81 14 43992389 43992408 AGCTACTTAGACTTCCGGAG 58 43963416 43992346 CTCAGTCACTTTGGGAACTG 59 NA InUTR Rattus norvegicus 81 Dlat ENSRNOG00000009994 ENSRNOT00000032152 1 1 1 80 8 55087618 55087636 CGCATACTGCAACAACTCC 60 55087141 55087576 TGAAGGTAGTGGAACCTTCTG 60 NA Rattus norvegicus 81 Dlat ENSRNOG00000009994 ENSRNOT00000032152 3 1 1 82 8 55086667 55087065 CTAATTGCAGAGGTTGAAACTG 58 55086606 55086624 GGAACAAGGATCTTTGCCA 58 NA Rattus norvegicus 81 Insm2 ENSRNOG00000007754 ENSRNOT00000010188 1 1 1 60 6 76384394 76384412 CTACAGGCTCTAGTGCACC 60 76384436 76384454 GAATCACCTCGGAGTAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008293.2 ENSRNOG00000048493 ENSRNOT00000072691 2 1 1 60 2 52152985 52153003 ACACATGGAAACAACCCTG 58 52153024 52153045 TGTATCTACAGCTCCTTGTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps2 ENSRNOG00000014179 ENSRNOT00000019508 2 1 1 80 10 14089635 14089654 TCCAAGACCTACAGCTACCT 60 14089693 14089910 GTCAGTGAATTCCTGATAAGGAG 59 NA Rattus norvegicus 81 Olr1541 ENSRNOG00000029104 ENSRNOT00000043299 1 1 1 60 11 43340635 43340654 GTCTGATCACTCTCATCTGG 57 43340674 43340695 GCAAGGAATAAGTACATAGGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdxp ENSRNOG00000009570 ENSRNOT00000040513,ENSRNOT00000073905 2 2 2 199 7 120140940 120140958 TTTCCTTCGCCAAGTTGAC 59 120144582 120144600 CTGGAACATGTAAGGGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Olr1349 ENSRNOG00000016546 ENSRNOT00000022152 1 1 1 60 9 99745810 99745828 CTGCTCTTTGCTGTCTTCC 59 99745852 99745870 TCATAGTGAGGTTGCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Evc2 ENSRNOG00000007025 ENSRNOT00000009914 3 1 1 80 14 78186790 78186808 TCCCTCAATGACCAACTGG 59 78179934 78186748 GATCTCCAACTCTTCTAGGGC 60 NA Rattus norvegicus 81 Magi2 ENSRNOG00000013962 ENSRNOT00000066643,ENSRNOT00000078799 2 2 2 80 4 11308644 11308665 GAGTTTCTACAGGTGAAGAGTG 59 11227278 11308605 GACAATGACATCACCTGTCTC 59 NA Rattus norvegicus 81 Jagn1 ENSRNOG00000009175 ENSRNOT00000012177 1 1 1 80 4 145400097 145403644 ATGCACTACCAAATGAGTGTG 59 145403686 145403704 CAACAGCAGCCATATGACG 59 NA Rattus norvegicus 81 Tbc1d25 ENSRNOG00000005303 ENSRNOT00000007130 1 1 1 92 X 15064901 15066483 CGAGTCAAGAAATGTGAGAGC 59 15066537 15066555 GATATGCTGCAACACGTCC 59 NA Rattus norvegicus 81 Nup98 ENSRNOG00000020347 ENSRNOT00000027575,ENSRNOT00000027590 2 2 2 80 1 167286530 167286548 TAGCACTAACATCAGCACC 57 167285861 167286488 AAACGAAGCTCCTCTAATGAC 58 NA Rattus norvegicus 81 Mphosph9 ENSRNOG00000001074 ENSRNOT00000049985,ENSRNOT00000086244 2 2 2 80 12 37727870 37728817 TGTGATGTTGTCTAAGATCAGG 58 37728854 37728876 GACTCATAATAAGCTCGAAGGTC 59 NA Rattus norvegicus 81 Tbx4 ENSRNOG00000003544 ENSRNOT00000004736 3 1 1 80 10 73345535 73345558 ACCAAGTACATACTACTCATCGAC 60 73345595 73346677 AGCAACCATCCATTTGTTGTC 60 NA Rattus norvegicus 81 Serpinb9d ENSRNOG00000022139 ENSRNOT00000032707 3 1 1 81 17 32516781 32517904 GTCCAGATATCTCAGGCAC 57 32517949 32517967 GGTTGTGAAGAAGCAACTG 57 NA Rattus norvegicus 81 AABR07065750.1 ENSRNOG00000045984 ENSRNOT00000072365 1 1 1 105 6 140215935 140216037 ATTTCCAAGCTGTGTCCTG 58 140215848 140215866 TGAGAACCCAGAGACAGTG 59 NA Rattus norvegicus 81 Vom2r1 ENSRNOG00000048575 ENSRNOT00000075323 1 1 1 80 10 111552462 111561235 GGAGAAACATTGGTTCCCT 57 111552400 111552419 GGCTGTTTGTTTCTGATGAC 58 NA Rattus norvegicus 81 Tmem161b ENSRNOG00000032414 ENSRNOT00000050072 1 1 1 80 2 12541209 12541227 TGGGTGAAACCAATCACCA 60 12541269 12546959 TGTGGCTTCTGTCATTAAAGG 59 NA Rattus norvegicus 81 Ly49i5 ENSRNOG00000051661 ENSRNOT00000078114 2 1 3 80 4 164352078 164352097 GGCATGAATGTAAACAGACC 57 164345868 164352037 GAAGGAACTTCAGTTCATCCT 58 NA Rattus norvegicus 81 AC106292.2 ENSRNOG00000059017 ENSRNOT00000085226 3 1 1 60 11 65744159 65744179 ATTCCTGCAAATAGACAGCCT 60 65744201 65744219 CAGACGCTGAGATACTGGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tfe3 ENSRNOG00000009605 ENSRNOT00000012829 2 1 1 80 X 15583039 15583585 GTACTCAAGGTTCAAACCCAC 59 15582979 15582998 GTACTGTTTCACCTGTTGCC 60 NA Rattus norvegicus 81 LOC100361105 ENSRNOG00000030812 ENSRNOT00000042900 3 1 1 86 6 141147080 141147185 CCTTCCTGGTATCCTGTCTG 59 141147013 141147031 GAACAGGTGAGGGAGAGTG 59 NA Rattus norvegicus 81 Setd8 ENSRNOG00000001062 ENSRNOT00000066253 1 1 1 81 12 37569821 37569839 ATTCTACCAGTGTAGCGGT 58 37569394 37569776 CCTTGAGACTTCTTCCGAG 57 NA Rattus norvegicus 81 Rsrp1 ENSRNOG00000017309 ENSRNOT00000023289,ENSRNOT00000082184 1 2 2 80 5 153261796 153262441 CTGAGTGAGAAAGATCGAATGG 59 153262482 153262500 GTCAAAGTTGGCTGTTCCT 58 NA Rattus norvegicus 81 Adam6 ENSRNOG00000037524 ENSRNOT00000056829 1 1 1 60 6 138434459 138434479 TTGCTCCCAAACTAACTTCTG 59 138434499 138434519 ATCCAACCGAGATAAACTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krt27 ENSRNOG00000011628 ENSRNOT00000015740 1 1 1 81 10 87259361 87259379 CAGGAACGAACTCACTGAG 58 87257740 87259318 AGAGTGTTTCATGGCTAAGAG 58 NA Rattus norvegicus 81 Fam174b ENSRNOG00000012369 ENSRNOT00000016481 1 1 1 80 1 135084404 135126215 AGTCTTCAGGTTGGGAAAGAG 60 135126257 135126275 GCCATTTCCACACGTTCAG 60 NA Rattus norvegicus 81 Fam174b ENSRNOG00000012369 ENSRNOT00000016481 3 1 1 90 1 135126256 135126274 GCTGAACGTGTGGAAATGG 60 135126322 135162482 GTTCATGTTCTCTGTATCTGATGTC 60 NA Rattus norvegicus 81 Ncam2 ENSRNOG00000002126 ENSRNOT00000078127,ENSRNOT00000002895,ENSRNOT00000082417 1 3 3 80 11 20495218 20495239 GAGAAGAGATGACCTTAACCTG 58 20495279 20501682 CAATGAGTTTGCCATTCCTG 58 NA Rattus norvegicus 81 Opn1mw ENSRNOG00000051529 ENSRNOT00000083147 1 1 1 80 X 156581370 156581388 GTGGGAATCGTCTTCTCCT 59 156580112 156581326 ATAAGGCCAGTACCTGCTC 59 NA Rattus norvegicus 81 Tspan5 ENSRNOG00000015913 ENSRNOT00000021381 3 1 1 85 2 244213857 244216063 CAGGAATACTGGCAGTGCT 60 244216112 244216130 CTTGCATTGGAGTCTGTGC 60 NA Rattus norvegicus 81 LOC100911130 ENSRNOG00000048613 ENSRNOT00000066373 2 1 1 101 X 15446957 15446975 ATTGTGGATGATTGTGGCG 59 15444357 15446892 GTGTCGAATTCCAACAGGG 59 NA Rattus norvegicus 81 Olr1455 ENSRNOG00000045676 ENSRNOT00000070882 1 1 1 60 11 55498062 55498081 TTCTACACCATCTTCACACC 57 55498103 55498122 CCTCCTTGTTTCTCACACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rcan2 ENSRNOG00000010350 ENSRNOT00000029593,ENSRNOT00000013956 2 2 2 84 9 19538017 19540703 TCTACTTTGCACAGGTCCA 59 19537951 19537969 ATGAGGAACTGTTTGGCAG 58 NA Rattus norvegicus 81 Ctc1 ENSRNOG00000005357 ENSRNOT00000007447 1 1 1 80 10 55608479 55608499 GGTGTGGAAATGTCAGTTAGG 59 55608541 55608688 GGACAGAGCTTGTAGACCA 59 NA Rattus norvegicus 81 Dpagt1 ENSRNOG00000009799 ENSRNOT00000013134 1 1 1 80 8 48662951 48662970 AATTTCCTCTACTCACTGCC 57 48663012 48663536 TGTCTTCGTATTGAGTCTGG 57 NA Rattus norvegicus 81 Rassf9 ENSRNOG00000038574 ENSRNOT00000058842 1 1 1 84 7 44146727 44176796 CGGCATAAGAACAGATCTCC 58 44176843 44176861 CAATCTTCTCCTCCTGGCA 59 NA Rattus norvegicus 81 Dusp22 ENSRNOG00000056376 ENSRNOT00000090946 3 1 1 80 17 35025621 35025640 ACAATTGAGCAGGAACAAGG 59 35002991 35025580 AGGTATTTAACTCCCTCCAGC 59 NA Rattus norvegicus 81 Sh3gl1 ENSRNOG00000049683 ENSRNOT00000074695 1 1 1 80 9 11053090 11053109 AGGCCCTAGAGAAGTTTGAG 59 11053150 11053306 CCTGCTCAATATCAGTCTCCA 59 NA Rattus norvegicus 81 Tpr ENSRNOG00000002394 ENSRNOT00000063833 3 1 1 80 13 67667179 67667197 CTGAAGACATGCCACAGAC 59 67667238 67668444 TTTCATACATTCCCAAACCTCC 59 NA Rattus norvegicus 81 Snrpb ENSRNOG00000006961 ENSRNOT00000079923,ENSRNOT00000049857 3 2 2 94 3 122699740 122699758 GAGAAGAGAAGCGAGTCCT 59 122698205 122699683 AATGCCAGTATCTTTGGGAG 58 NA Rattus norvegicus 81 Sept2 ENSRNOG00000017952 ENSRNOT00000024261 2 1 1 80 9 100648272 100649046 GACTAGACTCCTCAAAGCCA 59 100649089 100649107 CTAACCTTCTTGCCCTTGG 58 NA Rattus norvegicus 81 Fez2 ENSRNOG00000004577 ENSRNOT00000082071,ENSRNOT00000042735 3 2 2 80 6 998903 998922 ATGCCTGTAGACTGGAAGTC 59 990823 998863 ATCACTCATCCCTTTCTCTGAG 59 NA Rattus norvegicus 81 Trmt1l ENSRNOG00000002580 ENSRNOT00000003517 1 1 1 80 13 68797863 68797881 CAGGATGTGCATCTGTCAC 59 68797921 68800488 GCTCCCAATTTACTGGATATCTG 59 NA Rattus norvegicus 81 Lppr3 ENSRNOG00000027940 ENSRNOT00000031315 2 1 1 90 7 12661716 12661735 TACTCATGCCATCCTGTCAG 59 12661918 12662022 GAAGTACATCGAAACGTAGACAG 59 NA Rattus norvegicus 81 Vom2r35 ENSRNOG00000050831 ENSRNOT00000068611 2 1 3 83 1 65906616 66133495 CCAGATCAGTTATTCATCTTCCC 59 66133538 66133556 AGATCACTAGGCAGTGTCC 59 NA Rattus norvegicus 81 Srrm1 ENSRNOG00000018194 ENSRNOT00000056105,ENSRNOT00000082037 3 2 2 80 5 153685131 153688001 GTCTTCATCTGACTCTGGC 58 153685069 153685088 CCTACCTCACCATTCTTCAC 58 NA Rattus norvegicus 81 Adamts1 ENSRNOG00000001607 ENSRNOT00000002187 1 1 1 80 11 25346044 25346285 ATGAAGCACTTTGCTACTCC 58 25345983 25346001 TCCACCACAGGTTCTTGAG 59 NA Rattus norvegicus 81 Eef1g ENSRNOG00000020075 ENSRNOT00000027305 3 1 1 80 1 225173291 225173404 CTCATCACTGGGATGTTTCAG 59 225173445 225173464 GTTGTTGGTTCCAAACAGGA 59 NA Rattus norvegicus 81 LOC100911625 ENSRNOG00000048365 ENSRNOT00000005535 3 1 1 81 9 20257117 20257617 CCGGAACTATCCTGTGGTC 60 20257661 20257680 GACATTGGCTGTGAACTTGG 60 NA Rattus norvegicus 81 Rn60_8_0402.2 ENSRNOG00000051359 ENSRNOT00000077043 3 1 1 60 8 40198945 40198965 CTAAAGTCTTCCCAGTGTCCT 59 40198905 40198923 CTCCATAGAAACCCTGCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sv2b ENSRNOG00000011160 ENSRNOT00000076780,ENSRNOT00000015084 3 2 3 80 1 136673094 136675744 TACCTTCTACAACACAGACCTC 59 136673035 136673053 TCCTTCTGCTCCAGAAAGG 59 NA Rattus norvegicus 81 Kcnh4 ENSRNOG00000018790 ENSRNOT00000025518 2 1 1 82 10 88649553 88651622 GCTGAACCAAGAGATTTCCAG 59 88649491 88649509 CCTGTAAGAGGCCCATCAC 60 NA Rattus norvegicus 81 Ly49i4 ENSRNOG00000051600 ENSRNOT00000091932,ENSRNOT00000078219,ENSRNOT00000087796 3 3 5 80 4 164530393 164530413 GGCATGAATGTAAACAGACCT 59 164520729 164530353 GAAGGAACTTCAGTTCATCCT 58 NA Rattus norvegicus 81 Mgat3 ENSRNOG00000017434 ENSRNOT00000023434 2 1 1 83 7 121408869 121432403 CTTCACCTTGGATGAAGATGAG 59 121432447 121432465 AGTGCAGGAAGGAGATGAG 59 NA InUTR Rattus norvegicus 81 Rn60_16_0001.1 ENSRNOG00000046720 ENSRNOT00000075622 2 1 1 100 16 141126 141146 GGTGTCTGGTATATGAGTCAG 57 141015 141066 TTTGGTAAGATCTTCTCCCAC 57 NA Rattus norvegicus 81 Hspb9 ENSRNOG00000036819 ENSRNOT00000055248 2 1 1 60 10 88620880 88620898 CTGCTCAAGGATGATCTGG 58 88620922 88620940 TCTGGAAACTTGGTTCCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnppd1 ENSRNOG00000018325 ENSRNOT00000024975 1 1 1 80 9 82343917 82343937 GGAGACTCTATTATGGCTGGG 60 82343058 82343875 CCACAGTAATGTCTGCCAC 59 NA Rattus norvegicus 81 LOC100359687 ENSRNOG00000045785 ENSRNOT00000039083,ENSRNOT00000085278 3 2 2 80 8 56499840 56499858 CAAGTGACCAGTTAGCTGC 59 56499900 56501882 CAAATGGACCCAGATTCAGTG 59 NA Rattus norvegicus 81 Tmem254 ENSRNOG00000011276 ENSRNOT00000015011 3 1 1 82 16 3817686 3819587 TTCAGCTACTACACGTGGG 59 3819632 3819651 TACTTTGTGAAGGGACCCAG 59 NA Rattus norvegicus 81 LOC100364523 ENSRNOG00000056519 ENSRNOT00000084780 2 1 1 80 17 4048865 4048885 ATAACAGGGAGAATTCCTTGG 58 4048716 4048826 TGAATTCTTCATCAGTCAGGTC 58 NA Rattus norvegicus 81 Rn60_20_0064.7 ENSRNOG00000052710 ENSRNOT00000089737 1 1 1 60 20 4245528 4245546 ATGAGTGTGGAGAACATGG 57 4245486 4245506 ATACTGCTTGTGAGAATCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362583 ENSRNOG00000030442 ENSRNOT00000045933 1 1 1 80 17 24610657 24610679 CTCATGAGGTATGGACGTACC 60 24610597 24610615 TCCGGTAGTGGATCTTTGC 60 NA Rattus norvegicus 81 Sqle ENSRNOG00000009550 ENSRNOT00000012883 2 1 1 80 7 99623134 99624350 GGTTGCTTTCTATATTGTCTCC 57 99624389 99624409 AGAAATACGTGGCATAGACTG 58 NA Rattus norvegicus 81 Usp25 ENSRNOG00000001573 ENSRNOT00000002150,ENSRNOT00000084928 3 2 2 80 11 15472603 15472622 AGTTTGGCGGAATCAAACAG 60 15472665 15474676 GGCTTCAAGAACTCTGCTG 59 NA Rattus norvegicus 81 Tmem196 ENSRNOG00000037435 ENSRNOT00000056649,ENSRNOT00000080090 3 2 2 118 6 147930250 147933708 AGTCAGGACTTGTCATGATCC 60 147933788 147933806 CAGTGGGTACAGGGATGAG 59 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000083500,ENSRNOT00000020775,ENSRNOT00000085762 1 3 7 80 19 15172597 15172617 CCAACTTCTGGAATTGATTGG 58 15172659 15188703 GCTCCAGCATCTCTATGTC 58 NA Rattus norvegicus 81 Skiv2l ENSRNOG00000000421 ENSRNOT00000000481 3 1 1 80 20 4526457 4526825 GAAACACATGACCCGTACC 59 4526395 4526413 AATGTGTTTCGGAAGTCCC 58 NA Rattus norvegicus 81 Ogdhl ENSRNOG00000019955 ENSRNOT00000027054 3 1 1 80 16 8513269 8513429 AGGGTAGGAAGGTCATGTC 58 8513472 8513491 GATGGAAGGTCTCATAGACG 57 NA Rattus norvegicus 81 Slc25a21 ENSRNOG00000008931 ENSRNOT00000034342 3 1 1 81 6 77630183 77650869 CATCCAGTAAGGATCCAACC 58 77630121 77630139 TTAAAGACTGAGCCCACTG 57 NA Rattus norvegicus 81 LOC100910735 ENSRNOG00000037744 ENSRNOT00000043279 1 1 1 80 12 42345131 42349220 GATGTCCTAGGTCATGTAAGC 58 42349262 42349280 CAGGTACATGCACTTCCTG 58 NA Rattus norvegicus 81 Map3k9 ENSRNOG00000007271 ENSRNOT00000083488,ENSRNOT00000009693 2 2 2 80 6 105462780 105463704 GGAGATAGAGGATGAGGATAGTG 59 105462722 105462740 CAGAGGTAGGACTGGTTGG 59 NA Rattus norvegicus 81 Fam20b ENSRNOG00000004337 ENSRNOT00000006018 3 1 1 80 13 74298640 74302394 ATTTGGACAGGATTCTGGGT 59 74298579 74298598 CAGGCTTAACTTCTGTTCGC 60 NA Rattus norvegicus 81 AABR07002044.1 ENSRNOG00000048100 ENSRNOT00000029893 1 1 1 80 1 65294749 65294770 ACTAAGTTTGGTCACAACTGTG 59 65294807 65295168 CCGTAAGTAAGATGACAGAACTG 59 NA Rattus norvegicus 81 AABR07051670.1 ENSRNOG00000047535 ENSRNOT00000070878 2 1 1 116 3 19045255 19045445 TATCACAGTCACAGTGTCCAG 60 19045523 19045541 TAGCTTACACTGGAGCTGG 59 NA Rattus norvegicus 81 Spin2a ENSRNOG00000031286 ENSRNOT00000052281 3 1 1 122 X 17963952 17964614 CAGTGAGCAGGTATGAAGAC 58 17963849 17963867 TTGCCTCTTCTGAGAAGCT 59 NA InUTR Rattus norvegicus 81 Rgsl2h ENSRNOG00000026940 ENSRNOT00000025544 1 1 1 90 13 71282574 71282592 AAGACCAGAACGGAAACCA 59 71282296 71282520 GTTGCATATCAGAGCCCTG 58 NA Rattus norvegicus 81 Hbb-b1 ENSRNOG00000047098 ENSRNOT00000087661,ENSRNOT00000019913,ENSRNOT00000089102 2 3 3 139 1 168964654 168965311 GAGAACTTCAGGCTCCTGG 60 168965413 168965432 TAGTGGTACTTGTGAGCCAG 59 NA Rattus norvegicus 81 Hbb-b1 ENSRNOG00000047098 ENSRNOT00000087661,ENSRNOT00000019913,ENSRNOT00000089102 3 3 3 139 1 168964653 168965310 TGAGAACTTCAGGCTCCTG 59 168965413 168965431 AGTGGTACTTGTGAGCCAG 59 NA Rattus norvegicus 81 Syne1 ENSRNOG00000018960 ENSRNOT00000081637,ENSRNOT00000084712,ENSRNOT00000025795 1 3 6 80 1 41917419 41917440 TCATGGTTGAAGAACATCAAGG 59 41916021 41917379 TCTCATCTCATCTGCCACAC 60 NA Rattus norvegicus 81 Scyl3 ENSRNOG00000025318 ENSRNOT00000003551 2 1 1 80 13 82241602 82242548 CCTGAGGAGATGTCTCCAG 59 82242591 82242610 CAAAGCTCCAAAGGCATAGG 59 NA Rattus norvegicus 81 Capn11 ENSRNOG00000026025 ENSRNOT00000065754,ENSRNOT00000067104 1 2 2 80 9 17741230 17741345 GCCTACAAGATGTTTACTACAGAG 59 17741384 17741402 CATTCCACTCAATCCTGCC 59 NA Rattus norvegicus 81 Pacrgl ENSRNOG00000004140 ENSRNOT00000005587 2 1 1 80 14 66765759 66767474 GCATTCCTTGCAGATTGGT 59 66765697 66765718 GGTCAAATGGAAGAGTTTCAGG 60 NA Rattus norvegicus 81 Gfpt2 ENSRNOG00000002810 ENSRNOT00000003770 2 1 1 80 10 35309868 35309991 TTGAGACCAACACAGTGCT 60 35310034 35310053 CTATCACAATGAGCCTTCGG 59 NA Rattus norvegicus 81 Olr576 ENSRNOG00000047926 ENSRNOT00000071529 1 1 1 60 3 75719773 75719793 CAGGTCTAATGAGATCAACCA 57 75719733 75719756 GCAAGATATTAACAGAAGAGGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC681380 ENSRNOG00000048796 ENSRNOT00000043416 3 1 1 80 1 24924843 24924861 AGAGTGAAGGAATCTGGCC 59 24923747 24924801 TCTCCCAGGGTTAAACATTCC 60 NA Rattus norvegicus 81 Oxsr1 ENSRNOG00000013136 ENSRNOT00000018056 2 1 1 80 8 127991791 127991809 GAGAGTGGCAATCAAACGG 59 127981020 127991752 CTCATAGCTTGGATTTCTTTCAGG 60 NA Rattus norvegicus 81 C1r ENSRNOG00000011796 ENSRNOT00000078349,ENSRNOT00000056051 3 2 2 80 4 157128799 157128817 CTCCAACGAGGAGAATGGG 60 157128858 157129718 GTACATTCATCAAGGTCCACAG 59 NA Rattus norvegicus 81 Mcm3 ENSRNOG00000012543 ENSRNOT00000017081 1 1 1 80 9 26916772 26916790 GGATGAATCAGACCTGGAG 57 26916267 26916728 TGAGTCTTCCTCCTCTTCC 58 NA Rattus norvegicus 81 Sh2d4b ENSRNOG00000042623 ENSRNOT00000032309 2 1 1 80 16 17642154 17642172 AGTGGAAAGTGGAGATGGA 58 17642214 17657997 CCTCTTTCCTCTTGAATTCCT 57 NA Rattus norvegicus 81 Pdzrn4 ENSRNOG00000022844 ENSRNOT00000038686 3 1 1 81 7 133935710 133935730 GAAGACCATGAGTACGTTTCC 59 133935773 133977283 GACACAACTCGACTTCCTC 58 NA Rattus norvegicus 81 Elf2 ENSRNOG00000010815 ENSRNOT00000047635,ENSRNOT00000015067 3 2 2 85 2 140316009 140322475 AAAGAAGAAAGTTGGCCGT 58 140315942 140315960 TGGCTTTCTTCTTGACTCC 57 NA Rattus norvegicus 81 Sfrp5 ENSRNOG00000014940 ENSRNOT00000020182 1 1 1 80 1 261445858 261445876 TTTCCTCTGGACAACGACC 60 261444076 261445815 ACAGATCTTGGTCACTGGAG 59 NA Rattus norvegicus 81 Bco2 ENSRNOG00000038746 ENSRNOT00000059192,ENSRNOT00000059191 1 2 2 80 8 54973649 54973669 GATGATGGGAGAAGCCTAGAC 60 54969926 54973609 TGCCTTATAGACCTGATCGAG 59 NA Rattus norvegicus 81 AABR07029591.1 ENSRNOG00000057510 ENSRNOT00000086358 3 1 1 80 10 36580188 36580210 CCTTCGATGACTGCTTCAC 59 36580126 36580146 AAGAGATGATCTCCGTTCCAG 59 NA Rattus norvegicus 81 Tmem255b ENSRNOG00000026336 ENSRNOT00000076516,ENSRNOT00000042465 1 2 2 83 16 81204829 81204847 CAGTGCTGAACGTATTGGG 59 81204894 81205787 GAGACAGAGGGACCATGTC 59 NA Rattus norvegicus 81 Mr1 ENSRNOG00000003522 ENSRNOT00000004694 1 1 1 85 13 72775690 72779719 CCTAGAAAGAACAGAACATCCA 58 72775626 72775644 CATGAGCTCTGCAGAAGAG 58 NA Rattus norvegicus 81 Vom1r50 ENSRNOG00000031734 ENSRNOT00000049387 1 1 1 60 9 52400964 52400985 CTACAGTACATTCACAGTACCC 58 52400925 52400943 TTGTGGCTCTGTCTTCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prpsap1 ENSRNOG00000010083 ENSRNOT00000013573 1 1 1 80 10 105432530 105436105 GAGCTACCCTTGATGATGG 57 105432468 105432487 CACTATGATTGCAATGCGTC 58 NA Rattus norvegicus 81 Acvr2b ENSRNOG00000014477 ENSRNOT00000019777 1 1 1 80 8 128112982 128113306 CAATTGCTACGACAGGCAG 59 128113349 128113368 CAGAAATTGCCTTCACAGCA 60 NA Rattus norvegicus 81 RGD1564469 ENSRNOG00000031358 ENSRNOT00000040909 2 1 1 60 2 206903681 206903700 CACTCCATCATCAATGGGTC 59 206903721 206903741 AAGTGTAGTCAGTCTCCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csnk1g2 ENSRNOG00000018529 ENSRNOT00000080342,ENSRNOT00000025266 1 2 2 100 7 11947792 11950749 TCGCCTAGGAAAGAACCTG 59 11947629 11947647 TGTAGAAGCGGTACTCCAG 59 NA Rattus norvegicus 81 LOC100362054 ENSRNOG00000031178 ENSRNOT00000045266 3 1 1 87 1 67341084 67341102 GAAGTGGAAATCCTGTGGC 59 67341152 67350520 AACATGGACCATAGCAGGAG 60 NA Rattus norvegicus 81 RGD1564378 ENSRNOG00000029291 ENSRNOT00000040470 3 1 1 60 2 125257490 125257513 CGACTATGCTATCATCAAATTCCC 60 125257530 125257550 GTCCTCTACTTTCTTCATGGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd6 ENSRNOG00000020884 ENSRNOT00000054809,ENSRNOT00000028347 2 2 2 80 1 226853529 226853854 AAAGGACAATATGCCCTCC 57 226853467 226853486 ATGGTAGTTGTTGATCCCTG 57 NA Rattus norvegicus 81 Fam25a ENSRNOG00000055025 ENSRNOT00000089114 3 1 1 115 16 10706015 10706033 CTACCTGTCACTGTCTGCT 59 10704139 10705936 TCCTCCACTGCATGAACTG 60 NA InUTR Rattus norvegicus 81 Angptl6 ENSRNOG00000020603 ENSRNOT00000027963 1 1 1 80 8 21895783 21896957 ACTCATATTCTGGCAACTGTG 58 21895723 21895741 CACCATTGAGGTTGGAGTG 59 NA Rattus norvegicus 81 Angptl6 ENSRNOG00000020603 ENSRNOT00000027963 3 1 1 80 8 21895783 21896958 GACTCATATTCTGGCAACTGTG 60 21895724 21895742 ACCATTGAGGTTGGAGTGG 60 NA Rattus norvegicus 81 LOC100125362 ENSRNOG00000025463 ENSRNOT00000028972 1 1 1 62 8 57255143 57255161 TTCTTCTCTGCAACTGGCT 59 57254054 57254075 CTTTGATCTTGTTTCCTTTCCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tmem212 ENSRNOG00000012608 ENSRNOT00000016858,ENSRNOT00000074723 3 2 2 104 2 113606044 113606953 AGAGACACTTGTGGGAAGC 60 113605958 113605976 AATATGGACCAAGGAGGGC 59 NA Rattus norvegicus 81 Pld2 ENSRNOG00000019604 ENSRNOT00000056998 3 1 1 80 10 57163212 57163230 CTACCTGAACTCCAGCCAG 60 57163273 57163387 ATTCGATCAGCTGGATCCTC 60 NA Rattus norvegicus 81 Lrrc28 ENSRNOG00000023274 ENSRNOT00000033858 3 1 1 80 1 128501733 128501754 TACCTTTGTCTACCCTAAGCTC 59 128487855 128501694 AAGCCAATACTTGTCCTCCTC 60 NA Rattus norvegicus 81 Setd7 ENSRNOG00000013045 ENSRNOT00000017736 1 1 1 80 2 140588899 140588920 TTGATAAATCGACTTCCTCCTG 58 140586235 140588858 CGGCAACATAAACCCTCTC 59 NA Rattus norvegicus 81 Hebp1 ENSRNOG00000000024 ENSRNOT00000000025 2 1 1 80 4 168932954 168932973 GATCAGGAACTCACTGTTCG 58 168922832 168932911 TAGGAGACGTCTTCCTTGC 59 NA Rattus norvegicus 81 Spon1 ENSRNOG00000058003 ENSRNOT00000092099,ENSRNOT00000087612 3 2 2 80 1 178759842 178767267 TGTGAACAGGATCCCACAC 60 178767311 178767329 TCTGTACTTGGCAGTTCCG 60 NA Rattus norvegicus 81 Pphln1 ENSRNOG00000022778 ENSRNOT00000090908,ENSRNOT00000055688 3 2 2 80 7 134664499 134667680 AAATTTCTGAGTTTGAGGCGG 60 134667722 134667740 CGTCCGTTGTGTTTGACTC 60 NA Rattus norvegicus 81 Mut ENSRNOG00000050843 ENSRNOT00000075279 3 1 1 80 9 23330213 23330233 TCATCAAAGAACTTAGTGCCC 58 23325372 23330172 ATTCATAATCCTGTGGTGGG 57 NA Rattus norvegicus 81 Usp16 ENSRNOG00000001598 ENSRNOT00000002173 1 1 1 80 11 27110307 27110326 CTGAAGCACTACACAACACC 59 27110369 27111962 CTTGTAACACCAGACGCTC 59 NA Rattus norvegicus 81 Wnt3 ENSRNOG00000003845 ENSRNOT00000005176 2 1 1 125 10 91830820 91864994 TACCCAATTTGGTGGTCCC 60 91865083 91865101 CTCGATGTAATTGCGGCAG 60 NA Rattus norvegicus 81 F2r ENSRNOG00000048043 ENSRNOT00000074626 2 1 1 83 2 26122019 26135190 ACAGCCAGAATCTGAGAGG 59 26121954 26121973 TCTTCACTGGGATTCCTGAG 59 NA Rattus norvegicus 81 Ftsj1 ENSRNOG00000004776 ENSRNOT00000006365 3 1 1 80 X 14999303 14999321 CAGGGTTATGACCCTCCTG 59 14999362 14999904 CAGCTGGTTGAAATCGTATGAG 60 NA Rattus norvegicus 81 Mael ENSRNOG00000003790 ENSRNOT00000005060 2 1 1 80 13 84448881 84448902 ATTGGCTGTGTCAAATATTCCC 59 84447325 84448840 TCGTGGAATTTCACCTGGA 59 NA Rattus norvegicus 81 LOC689031 ENSRNOG00000047990 ENSRNOT00000070960 1 1 1 60 2 45620406 45620425 TGGCACCGAGAATTATATCC 57 45620448 45620466 TGTAAGGGTCTTCCTGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ralgps2 ENSRNOG00000004736 ENSRNOT00000077169,ENSRNOT00000036200 2 2 2 81 13 74513361 74513379 TTACGCCAGAAGAATACGC 58 74492351 74512354 CTTGAAAGTTCATCTGGCTG 57 NA Rattus norvegicus 81 Pgap2 ENSRNOG00000020371 ENSRNOT00000076208,ENSRNOT00000055235 1 2 3 115 1 167321103 167321121 CTGCTCAAGATCCCTCCAG 60 167321199 167323703 CTTGTCAGACTCAAAGCCAC 59 NA Rattus norvegicus 81 Adm2 ENSRNOG00000029830 ENSRNOT00000044854 3 1 1 144 7 130297297 130297897 GACTGAGACCCAGAGAACC 59 130298005 130298023 AGATGAACCGTAGCAAGGG 60 NA Rattus norvegicus 81 Akap13 ENSRNOG00000010964 ENSRNOT00000014802 3 1 1 80 1 137280370 137284258 GAGAAACAAGTCTTCACAGCC 60 137284300 137284318 AACATTGGTGCAGCAATGG 60 NA Rattus norvegicus 81 AABR07036505.1 ENSRNOG00000052647 ENSRNOT00000041732 3 1 1 80 12 45319943 45320516 GTCTACATACAGAAGCCTGTG 58 45320650 45320668 GGGCTGAAGTATGTGTACC 58 NA Rattus norvegicus 81 Slco5a1 ENSRNOG00000008966 ENSRNOT00000011940 2 1 1 80 5 5920968 5935706 GAATGTCAGAGACCTACCGA 59 5935748 5935767 GCTGTGTATGACAGACTCAC 58 NA Rattus norvegicus 81 Sv2c ENSRNOG00000018094 ENSRNOT00000024459 3 1 1 80 2 26536341 26536360 GAGATTGAGAGTGACACAGG 58 26535036 26536300 AGTCAACCAAATTCCGTACAG 59 NA Rattus norvegicus 81 Ldoc1l ENSRNOG00000021671 ENSRNOT00000039588 2 1 1 60 7 125465648 125465666 GGCCGAGCTAACTCTACTG 60 125465606 125465624 TGGAGTAATCTGCAGAGCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam169b ENSRNOG00000022822 ENSRNOT00000040147 3 1 1 80 1 129278835 129278854 ACTGTACCGTGATGAACCTC 60 129278895 129297204 AAGTAAACAGCCACAACTGTC 59 NA Rattus norvegicus 81 Sycp2l ENSRNOG00000023831 ENSRNOT00000038180 2 1 1 80 17 21447802 21450030 CTGAGAAAGATGAAGCCGAG 59 21447741 21447762 CAGAAATGTTTAGAGGAGTGGA 58 NA Rattus norvegicus 81 Fam24a ENSRNOG00000026035 ENSRNOT00000036128 2 1 1 93 1 201914119 201914138 GCTAGCACTTTGCTGATAGC 60 201914194 201915022 CTTCCCTTGCGCATTTCAG 60 NA Rattus norvegicus 81 AABR07009890.1 ENSRNOG00000050470 ENSRNOT00000075039 2 1 1 79 2 115159310 115160088 TATGTGGTGACAGCAGTGG 60 115159249 115159268 TAGTACATGGGAGTGTGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Slc9a1 ENSRNOG00000007982 ENSRNOT00000011049 2 1 1 80 5 151614212 151614232 GAGATCCACATCAATGAGCTG 59 151614274 151617620 GTAGAGGACCACAGTGACG 60 NA Rattus norvegicus 81 Theg ENSRNOG00000007960 ENSRNOT00000042792,ENSRNOT00000010549 3 2 2 104 7 13014383 13014401 GGCAGTGTCTGAAAGACAG 59 13014723 13015359 AGTATACAGAAGGCCAATACAG 58 NA Rattus norvegicus 81 Casp7 ENSRNOG00000056216 ENSRNOT00000080511 3 1 1 80 1 277234016 277236513 TTAGACGAGCCTCTGAAGAG 59 277236555 277236574 TCAGATTCTCTTCTCCGTGG 59 NA Rattus norvegicus 81 Slco1c1 ENSRNOG00000009740 ENSRNOT00000013230 3 1 1 80 4 175745749 175747630 GATAAACGATGAGTGTGAAGTG 58 175747671 175747689 CCTAATCCTCGGAGAAGGT 58 NA Rattus norvegicus 81 Wdr24 ENSRNOG00000019713 ENSRNOT00000026697 1 1 1 80 10 15194511 15194608 TCATCACCAATGAGGATAACGA 59 15194649 15194667 CCTCTCCTTCTACGTCACC 59 NA Rattus norvegicus 81 Sgsm3 ENSRNOG00000018745 ENSRNOT00000025382 3 1 1 80 7 122231571 122231682 ACCTACAGGTTGGATGAAGAC 60 122231798 122231816 GGTCACATTCACAGACTGC 59 NA Rattus norvegicus 81 Zc2hc1a ENSRNOG00000022356 ENSRNOT00000066966,ENSRNOT00000090866 1 2 2 80 2 96497889 96497907 TCCTTTGGGAAACAAACCT 57 96488699 96497845 GACTTGGTGTTAGCTCCTG 58 NA Rattus norvegicus 81 Zscan22 ENSRNOG00000031113 ENSRNOT00000026305 3 1 1 60 1 65681052 65681072 GGAGGATATGACTCAACTGCT 59 65678680 65678698 CTCTTCACGGTCCATTCCT 59 NA DesignNoJunction Rattus norvegicus 81 Phf8 ENSRNOG00000002708 ENSRNOT00000045708 3 1 1 80 X 21088742 21088762 GTAAACCATTGAAGACTGGGA 58 21088803 21091689 GAATCACTTCGTCTGAGCTG 59 NA Rattus norvegicus 81 AC106438.1 ENSRNOG00000059517 ENSRNOT00000084409 1 1 1 122 7 13466502 13466523 GTCATGTACACTGTAGTTACCC 58 13466398 13466417 AAGTAGGGAAGGTGGACTC 58 NA Rattus norvegicus 81 LOC360933 ENSRNOG00000029734 ENSRNOT00000048329 1 1 1 80 14 41430610 41430628 GAAGCAGAACTACAGGGAC 58 41430672 41433861 ATACCGCTCCAGAATTCCT 58 NA Rattus norvegicus 81 Abat ENSRNOG00000002636 ENSRNOT00000003633 1 1 1 80 10 7097344 7097362 CACCTTCTGTTCCTTCGAC 58 7094491 7097300 AGTACCACACCTTTGTTCC 57 NA Rattus norvegicus 81 Grk4 ENSRNOG00000011847 ENSRNOT00000015894 3 1 1 80 14 81273482 81273502 AGTGAAGACTGAAACTGAGGA 59 81270725 81273442 TCCTTGGTAAGTAACATGCTG 58 NA Rattus norvegicus 81 Hmg1l1 ENSRNOG00000051482 ENSRNOT00000086591 2 1 1 60 19 59984848 59984866 TGGTCAAGGCTGAGAAGAG 59 59984806 59984825 TCTTCATCCTCCTCGTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Idh3g ENSRNOG00000055572 ENSRNOT00000081819 1 1 1 80 X 157008023 157008044 CCAATAAGAACATTGCTAACCC 58 157008084 157008190 CATAGGAATGGAGCTTGAGG 58 NA Rattus norvegicus 81 Csad ENSRNOG00000011573 ENSRNOT00000079678,ENSRNOT00000016205 3 2 2 80 7 143792699 143792717 GGAGGTGCTGAAGAAACTC 58 143792232 143792656 TTAGAGATGGAACCACCAGG 59 NA Rattus norvegicus 81 Prkab1 ENSRNOG00000001142 ENSRNOT00000001508 1 1 1 82 12 46325450 46325675 CTATCAAGGATGGAGTGATGG 58 46325719 46325737 TATGGGCTTGTAGAGGAGG 58 NA Rattus norvegicus 81 Prkab1 ENSRNOG00000001142 ENSRNOT00000001508 3 1 1 84 12 46325450 46325675 CTATCAAGGATGGAGTGATGG 58 46325720 46325739 CATATGGGCTTGTAGAGGAG 57 NA Rattus norvegicus 81 Hes7 ENSRNOG00000007391 ENSRNOT00000009757 1 1 1 80 10 55708172 55708190 CCTAGAAGAGCTGAGGCTG 59 55708783 55708801 ATCTCTGCTTTCTCCAGCT 58 NA DesignNoJunction Rattus norvegicus 81 Il36rn ENSRNOG00000005751 ENSRNOT00000091805,ENSRNOT00000007593 2 2 2 80 3 1389540 1389558 ATCCTGGGTGTTCAAGGAG 59 1389600 1389825 GTTCACTGGCTCAAGTTTCAG 60 NA Rattus norvegicus 81 Sat2 ENSRNOG00000011714 ENSRNOT00000079617,ENSRNOT00000015769 3 2 2 80 10 56228461 56228666 GATCAGTGAAGAAGCCCTG 58 56228709 56228728 GCTGGAATAATCTCTGCCAC 59 NA Rattus norvegicus 81 LOC683849 ENSRNOG00000050493 ENSRNOT00000043527 1 1 1 80 4 70758556 70758933 TAGCTTTGGTGTCAATGAACC 59 70758975 70758993 TAGGAGGCTTCACAGTCAG 58 NA Rattus norvegicus 81 LOC683849 ENSRNOG00000050493 ENSRNOT00000043527 2 1 1 80 4 70758557 70758933 AGCTTTGGTGTCAATGAACC 59 70758975 70758994 GTAGGAGGCTTCACAGTCAG 60 NA Rattus norvegicus 81 Rybp ENSRNOG00000005353 ENSRNOT00000007185 2 1 1 88 4 132740747 132740765 CTGCACCTTTAGGAACAGC 59 132694063 132740696 AATTGATGCGAGGTTTCCTG 59 NA Rattus norvegicus 81 Gapdhs ENSRNOG00000021009 ENSRNOT00000028518,ENSRNOT00000067813 2 2 2 80 1 89182310 89182330 CAGAACATCATCCCATCTTCC 59 89182120 89182270 TCCTGTTAACTTCCCATTGAG 58 NA Rattus norvegicus 81 Fam168b ENSRNOG00000023467 ENSRNOT00000039480 1 1 1 86 9 41321591 41331510 ATATCCAGCTGGTTTCCCT 58 41321523 41321541 GTTTGGAAGGTAGGGTTCG 58 NA Rattus norvegicus 81 Rhoc ENSRNOG00000012630 ENSRNOT00000085355 3 1 2 84 2 207277445 207277463 CATGGCAAACAGGATCAGC 60 207277510 207279006 CAGATTCCTGGAGTTCTCCC 60 NA Rattus norvegicus 81 Olr1108 ENSRNOG00000010804 ENSRNOT00000014337 3 1 1 60 7 140055062 140055080 AGTCATTGTGCTCTTGGCT 60 140055103 140055122 GTAGTGGTGAATGGTGTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc12 ENSRNOG00000008595 ENSRNOT00000011454 3 1 1 80 8 53786269 53788682 GTGCATTGACAACGAGGAG 59 53786207 53786225 GAGTCCATGAAGGAAGGCA 59 NA Rattus norvegicus 81 AABR07033579.2 ENSRNOG00000061897 ENSRNOT00000061600 1 1 1 89 11 28945593 28945611 AACTACTATGGCGGCAGAG 59 28960840 28960858 GTAGGAGCCATAGCCACAG 60 NA DesignNoJunction Rattus norvegicus 81 Smad9 ENSRNOG00000000091 ENSRNOT00000000102 3 1 1 80 2 144197398 144202224 CACATTGGAAAGGGTGTGC 60 144202268 144202286 GACAAAGATGCTGCTGTCG 60 NA Rattus norvegicus 81 Tpcn1 ENSRNOG00000059344 ENSRNOT00000083890 3 1 1 80 12 41560169 41560188 GCAATAAGACCAAGGTGGAG 59 41560230 41560809 CAAACAAGGTCACAAAGCTG 58 NA Rattus norvegicus 81 LOC100364265 ENSRNOG00000012088 ENSRNOT00000072844 3 1 1 80 5 16781929 16781948 TACAACACATGCATGCAGTG 60 16780117 16781888 TACTGCAGCCTTCTGTAACTC 60 NA Rattus norvegicus 81 AABR07066949.1 ENSRNOG00000046783 ENSRNOT00000064279 2 1 1 97 9 23597021 23600993 ACTGAAGGAAGGGTACTGC 59 23601054 23601072 TGAGAGTCAGTCTTGTGCA 59 NA Rattus norvegicus 81 LOC691135 ENSRNOG00000015271 ENSRNOT00000020751,ENSRNOT00000084806 1 2 2 80 1 69618885 69626051 CCTTATATCCTCACTGGTTTATCG 59 69626088 69626108 GCTTCAGTTTGTGAAAGACTC 58 NA Rattus norvegicus 81 LOC691135 ENSRNOG00000015271 ENSRNOT00000020751,ENSRNOT00000084806 2 2 2 80 1 69618886 69626052 CTTATATCCTCACTGGTTTATCGG 59 69626088 69626109 TGCTTCAGTTTGTGAAAGACTC 60 NA Rattus norvegicus 81 Cep44 ENSRNOG00000010566 ENSRNOT00000014083 1 1 1 80 16 37182471 37182494 CTGATGGAATCCAATATAGAGCTC 59 37182528 37183662 CTGATCACGAAGAAGCTTATAGAC 59 NA Rattus norvegicus 81 Cep44 ENSRNOG00000010566 ENSRNOT00000014083 3 1 1 83 16 37186680 37186699 GATGAGTTGGAAGAGCAGAG 58 37186744 37187678 ACACATATCTTGCAGCTCAG 58 NA Rattus norvegicus 81 Rras2 ENSRNOG00000012258 ENSRNOT00000017199,ENSRNOT00000087771 1 2 2 80 1 178953442 178953464 GTAAAGGATCGTGATGAGTTTCC 60 178944644 178953402 TTCCTGCGTTACCTGTCTC 59 NA Rattus norvegicus 81 Rras2 ENSRNOG00000012258 ENSRNOT00000017199,ENSRNOT00000087771 2 2 2 80 1 178953442 178953462 AAAGGATCGTGATGAGTTTCC 59 178944642 178953400 TCTTCCTGCGTTACCTGTC 59 NA Rattus norvegicus 81 LOC687707 ENSRNOG00000042847 ENSRNOT00000067919 1 1 1 81 10 57240304 57240322 GACAGCCTCCTTAGGACTG 59 57240365 57240478 GGCTGAGATCTCTAACAAGGT 59 NA Rattus norvegicus 81 LOC100911119 ENSRNOG00000032769 ENSRNOT00000046355,ENSRNOT00000081843 2 2 2 136 3 143807136 143807154 CTGTCCAAGGGATCACTGG 60 143804040 143804059 GCATTGGTCATCTTGTAGCT 58 NA DesignNoJunction Rattus norvegicus 81 L1cam ENSRNOG00000061230 ENSRNOT00000084390,ENSRNOT00000080945 1 2 2 80 X 156925670 156925688 TCTCTTGCTCCTCATCCTG 59 156925732 156926064 TCCTCCTTGTCCTTCACTG 59 NA Rattus norvegicus 81 Rgs20 ENSRNOG00000008100 ENSRNOT00000089273,ENSRNOT00000010682 1 2 2 80 5 14490478 14493064 CTCTCCGAAAGAGGTCAGC 60 14493105 14493126 AAGATGTGTTGAGATGGATCCA 60 NA Rattus norvegicus 81 Rnf4 ENSRNOG00000013930 ENSRNOT00000077799,ENSRNOT00000019555 1 2 2 80 14 81670404 81670422 TCGGGAAACAACTTCAACC 58 81667710 81670360 ACGATTTCATCTCCAACGG 58 NA Rattus norvegicus 81 Nuf2 ENSRNOG00000002711 ENSRNOT00000003650 2 1 1 80 13 87825477 87826240 TTAAAGGAGAGCCTGAACCT 58 87825416 87825436 GGAGTTCTCTTCAGTCTTCAG 58 NA Rattus norvegicus 81 Otos ENSRNOG00000016567 ENSRNOT00000090382,ENSRNOT00000022220 2 2 2 104 9 99821633 99821651 GCACTTGGTAAGGATGCAG 59 99820730 99821415 TTGGGATCTGCTTCCTCTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Sprr4 ENSRNOG00000042266 ENSRNOT00000066614 3 1 1 61 2 192697632 192697650 CAATGTCCAGCAAAGAGCA 59 192697589 192697607 TCTTGCTGTGCAGTAGGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olfml2a ENSRNOG00000014034 ENSRNOT00000018853 2 1 1 80 3 23242080 23242099 AGGCTTCACCTACTACAAGG 59 23242142 23243359 CCTTTGAGGGTGTTGTCAG 58 NA Rattus norvegicus 81 Phf19 ENSRNOG00000018874 ENSRNOT00000025528 1 1 1 80 3 13960669 13960687 TCAGACGTGGATTCTACCG 59 13959470 13960626 TACTGTCCATCTGGAGTCCT 59 NA Rattus norvegicus 81 Zfp398 ENSRNOG00000006703 ENSRNOT00000008743 1 1 1 80 4 77535726 77536084 TCTCATCTCCATGGATTATGC 58 77536124 77536144 TCATCTGTACTGTGTTCTCCT 58 NA Rattus norvegicus 81 Lmbrd1 ENSRNOG00000012178 ENSRNOT00000016887 1 1 1 80 9 31037017 31037036 ATTCCTCCACAAGTTCTGGT 59 31037078 31037436 AATCCGATCAAGAACACCAC 58 NA Rattus norvegicus 81 Lrig2 ENSRNOG00000019957 ENSRNOT00000027042 1 1 1 80 2 206937933 206938962 AGTATCACAAACACAGAGGAG 58 206937873 206937891 CGGTTCAGACAATGTTCCT 58 NA Rattus norvegicus 81 Cpeb2 ENSRNOG00000005043 ENSRNOT00000082653,ENSRNOT00000081878,ENSRNOT00000006727 3 3 3 80 14 72338054 72339039 TTGATGAAGATGAGATCACTGC 59 72337995 72338015 ACTTGCTTTCTGCTTTATGGG 59 NA Rattus norvegicus 81 Srsf7 ENSRNOG00000027360 ENSRNOT00000038448 1 1 1 80 6 2883612 2883631 CTAGATCACATTCCCGATCC 57 2883470 2883569 ATGCTGATCTTGACCTCCT 58 NA Rattus norvegicus 81 Ctnnd2 ENSRNOG00000010649 ENSRNOT00000044871 1 1 1 80 2 83543795 83683506 ATGAGCAGCATCAGTTCAG 58 83684123 83684143 TGTGAGTTCATCTTCGATGTC 58 NA Rattus norvegicus 81 Crim1 ENSRNOG00000004208 ENSRNOT00000005983 2 1 1 80 6 956478 958965 ACCTCCCTAGAGATATGGGTC 60 959004 959025 CCAATGATGAGTCTTCACTTGG 59 NA Rattus norvegicus 81 Sox10 ENSRNOG00000011305 ENSRNOT00000015283 1 1 1 83 7 120401467 120401485 AAGTTAGCCGACCAGTACC 59 120397380 120401420 ACTCTCGTTCAGCAACCTC 60 NA Rattus norvegicus 81 Fto ENSRNOG00000011728 ENSRNOT00000086829,ENSRNOT00000015718 1 2 2 80 19 16914728 16955431 GGAGAGTGTGACAAATGCC 59 16914666 16914685 GCAGACAGAATTTCACTCCT 58 NA Rattus norvegicus 81 Rbx1 ENSRNOG00000058914 ENSRNOT00000086603 3 1 1 88 7 122703499 122705871 ATGGATCTTTGTATCGAGTGTC 58 122705920 122708668 AAAGCGTGGTTACAGACTC 58 NA Rattus norvegicus 81 Msh2 ENSRNOG00000015796 ENSRNOT00000021538 1 1 1 80 6 11230001 11249055 CTTTAGATATGGATCAGGTGGAG 58 11229943 11229962 CTTCTCTTAGCTCACTCAGG 57 NA Rattus norvegicus 81 Trim33 ENSRNOG00000018946 ENSRNOT00000025633,ENSRNOT00000025600 2 2 2 80 2 205848586 205850291 CCTGTATGTTGAGCAGTCC 58 205850335 205850353 AGGTATCCAGCTCACTCTC 58 NA Rattus norvegicus 81 Ubn2 ENSRNOG00000005564 ENSRNOT00000064175 2 1 1 80 4 66200629 66207503 TCTTCTAGACATCGAGTTACAGC 60 66207541 66207561 ACAAATGCTTCAAGATGGGAG 59 NA Rattus norvegicus 81 Fcrla ENSRNOG00000003136 ENSRNOT00000004183,ENSRNOT00000079247 3 2 2 94 13 89300246 89300761 CTGTCCAAGAGTTGTTCGC 59 89300170 89300188 CTTTGTCTCACAGCTCAGG 58 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000082605,ENSRNOT00000085389,ENSRNOT00000014230,ENSRNOT00000083233 3 6 10 88 10 87122196 87126967 GACCCAGACGATTATGATGAC 58 87122128 87122146 AGGATCTCACTGATGAGGC 59 NA Rattus norvegicus 81 Spag1 ENSRNOG00000010078 ENSRNOT00000013801 1 1 1 80 7 75046287 75048370 CCATCTATACAAACAGGGCTC 58 75048412 75048430 GAAGTGCCTTGTCACAGTC 59 NA Rattus norvegicus 81 Nsmce4a ENSRNOG00000020452 ENSRNOT00000027721 3 1 1 80 1 201099862 201099882 CATGTTTCCTTCATCATACGG 57 201097288 201098600 AATCACGGGCTCTATTATTGG 58 NA Rattus norvegicus 81 AABR07051565.1 ENSRNOG00000053188 ENSRNOT00000058260 1 1 1 76 3 17180427 17180448 CTTTAGAGATGGAGACAGACAC 58 17180725 17180743 CACAATGTCACCAGTGGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1563231 ENSRNOG00000047571 ENSRNOT00000074382 1 1 1 60 3 16999685 16999703 CAGACTCCTGCTATGGGTG 60 16999402 16999420 CAGTACAGTGTCACCAGTG 58 NA DesignNoJunction Rattus norvegicus 81 Clec2l ENSRNOG00000029644 ENSRNOT00000077486,ENSRNOT00000067097 1 2 2 80 4 66418796 66420754 TTGACCCAGACACATTCAC 58 66420798 66420816 GACACTCTGTTGACACCAG 58 NA Rattus norvegicus 81 Foxi1 ENSRNOG00000006293 ENSRNOT00000009058 2 1 1 109 10 19163958 19163977 TACAACAAGAGCAAAGCTGG 59 19162247 19163886 TAATTCCCTTTGCCTGGGT 59 NA Rattus norvegicus 81 Hprt1 ENSRNOG00000048561 ENSRNOT00000065935 1 1 1 80 X 158216382 158216405 GCGCTGAATAGAAATAGTGATAGG 60 158210289 158216346 TGACTGGTCATTACAGTAGCTC 60 NA Rattus norvegicus 81 Hprt1 ENSRNOG00000048561 ENSRNOT00000065935 2 1 1 80 X 158216379 158216403 GCTGAATAGAAATAGTGATAGGTCC 59 158210287 158216344 GTTGACTGGTCATTACAGTAGC 59 NA Rattus norvegicus 81 Neu4 ENSRNOG00000019031 ENSRNOT00000065533 2 1 1 106 9 101285029 101286507 GCTATTGCTTTACGCTCCC 59 101286577 101286595 GTCAGACCAGTCCTTTCCC 60 NA InUTR Rattus norvegicus 81 Cyb5r4 ENSRNOG00000010024 ENSRNOT00000013908 2 1 1 80 8 94745234 94745555 ATGTCCAGTCTCAGGAAGG 58 94745598 94745617 TTTCTCTAGCTGGCATCTCC 59 NA Rattus norvegicus 81 Zfp341 ENSRNOG00000017086 ENSRNOT00000047286 2 1 1 88 3 150148897 150148916 GCTACCAACAGCATCTACAC 59 150148966 150150274 ATGTATGTGGAGATCTGGCG 60 NA Rattus norvegicus 81 Lin54 ENSRNOG00000002203 ENSRNOT00000003006 3 1 1 80 14 10794845 10811040 GAAGTCACCAAATAAGACAGTG 57 10811081 10811099 ATGGTCTTAAACTGCGACG 58 NA Rattus norvegicus 81 Dbx2 ENSRNOG00000006885 ENSRNOT00000009143 1 1 1 80 7 136974582 136974603 CAGAAGCAGAAATACATCAGCA 59 136967518 136974542 AATCTTCACCTGTGACTCCT 58 NA Rattus norvegicus 81 Tmem50b ENSRNOG00000002028 ENSRNOT00000002775 2 1 1 81 11 31730169 31730187 TGTATCCTAAGCCTGAGCA 58 31727437 31730126 GCATTTATCATGAAGAAGGCC 58 NA Rattus norvegicus 81 LOC102550668 ENSRNOG00000033487 ENSRNOT00000048673 2 1 1 60 19 33130418 33130438 TTGTAGACATCAAGGGAATGG 58 33130460 33130478 CCATGGTAACACTTGTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Coq2 ENSRNOG00000002194 ENSRNOT00000002987 3 1 1 85 14 10597129 10599757 CTCACCAGATTTACACCGTG 59 10599805 10599823 CAGGAGTAGGCCTACTGTG 59 NA Rattus norvegicus 81 Lppr2 ENSRNOG00000012164 ENSRNOT00000016790 3 1 1 106 8 22949707 22951083 TGTCTTCGTGGAGTCTGTG 59 22951153 22951171 TGTCGTAGCAGAAGAAGCC 60 NA Rattus norvegicus 81 LOC500876 ENSRNOG00000004914 ENSRNOT00000006510 1 1 1 60 7 100382184 100382202 CACTCCAATGTCCAGACCA 59 100382142 100382160 TAGTAGTCAGCAGGGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aurkc ENSRNOG00000015825 ENSRNOT00000021245 2 1 1 80 1 69962333 69963166 CAGTCGCACTTACAACACC 59 69962271 69962292 TTCCAGAATTAAGTACACCCGA 59 NA Rattus norvegicus 81 Cnep1r1 ENSRNOG00000015534 ENSRNOT00000020816 3 1 1 80 19 19904119 19904142 GATTAGCTGTATAACGCTGATAGG 59 19903455 19904083 CGAGCAGCTATAATTGATGGTG 60 NA Rattus norvegicus 81 Adamts4 ENSRNOG00000003538 ENSRNOT00000004713 3 1 1 82 13 89626147 89628791 CAATGGCTATGGACACTGC 59 89628836 89628855 CATCATAGTCCTTGCCAGGA 59 NA Rattus norvegicus 81 Utp15 ENSRNOG00000016591 ENSRNOT00000022259 2 1 1 80 2 28364191 28364212 CATTCTGACTATGTGAGGTGTG 59 28363544 28364154 CACGGTATGATCATATGATCCTG 59 NA Rattus norvegicus 81 Apoa1 ENSRNOG00000045679 ENSRNOT00000074357 1 1 1 84 8 50525606 50525624 TGGATGCAGTCAAGGACAG 60 50525671 50526239 AGGAGATTCAGGTTCAGCTG 60 NA Rattus norvegicus 81 Adamts17 ENSRNOG00000037080 ENSRNOT00000055877 3 1 1 80 1 127882791 127882809 ATGCTGCTGTGTTTGTGAC 59 127887907 127939773 CTAAGTAAGCAATTCCAACGGT 59 NA Rattus norvegicus 81 AC112531.1 ENSRNOG00000031588 ENSRNOT00000047649 3 1 1 80 2 148800802 148801575 AGCATGCAGAGTCTTTCAG 58 148800740 148800759 ACCCATACAATATTGCTGGT 57 NA Rattus norvegicus 81 Gls2 ENSRNOG00000031612 ENSRNOT00000018737 2 1 1 80 7 2619651 2619670 TTCCACAACTACGACAACCT 59 2619713 2619904 GGTCTTGTTCCGAACTTCC 59 NA Rattus norvegicus 81 Slc44a2 ENSRNOG00000031824 ENSRNOT00000049973 2 1 1 80 8 22383299 22384535 CTGTTTCTTGGAGGATCTGG 58 22384577 22384596 AGGAGTTTCTTGAGAGTGGA 58 NA Rattus norvegicus 81 Snx25 ENSRNOG00000011116 ENSRNOT00000014828 3 1 1 80 16 49369433 49369453 CTTACGAGGAGTTCATCAAGC 59 49369491 49383813 CCACTACAATTTGATACCTGAGC 60 NA Rattus norvegicus 81 Cept1 ENSRNOG00000017723 ENSRNOT00000036551 1 1 1 80 2 209121640 209121661 TCCTGTACAAATTACTTCCGTG 59 209121196 209121599 AAGGACACTTGTTCCTGCT 59 NA Rattus norvegicus 81 Tbk1 ENSRNOG00000005528 ENSRNOT00000009260 3 1 1 80 7 63659111 63659129 CAGTGGAATCAAGCACACC 59 63658794 63659069 AGCTTCTTCATACCGAGAGTC 59 NA Rattus norvegicus 81 Ampd2 ENSRNOG00000019240 ENSRNOT00000088657,ENSRNOT00000026051 2 2 2 80 2 210866782 210866803 CTGACCTACAGGAATTTGTAGC 59 210866509 210866744 GGTAGCAGAATGACTTTATGGG 59 NA Rattus norvegicus 81 Vom2r27 ENSRNOG00000048635 ENSRNOT00000036807 2 1 1 80 1 64681128 64681146 AAGTGCTCCAAAGGAACAG 58 64680023 64681084 GACTGTGGAATCTCTGTCG 58 NA Rattus norvegicus 81 Nrsn2 ENSRNOG00000023935 ENSRNOT00000032881,ENSRNOT00000081153 2 2 2 107 3 147844223 147849279 GTTGTGTTGGAAGGTCACC 59 147844134 147844155 TCGTTAACAAGCTCTAGTTTGG 59 NA Rattus norvegicus 81 AABR07037412.2 ENSRNOG00000047165 ENSRNOT00000073114 1 1 1 80 X 20223163 20223182 CCCTGGAGACTTTCAAACTG 59 20223224 20223581 CAAGATCCACGTTTGGAGAG 59 NA Rattus norvegicus 81 Gp1ba ENSRNOG00000025959 ENSRNOT00000035445 2 1 1 89 10 57260752 57260960 TTTCTGCCTGACTGTTCAC 58 57261013 57261031 TTGGAGACATCACAAGTGG 57 NA InUTR Rattus norvegicus 81 Spon2 ENSRNOG00000006033 ENSRNOT00000008262 2 1 1 91 14 82820545 82821148 GTGACTGAGATAACCGCCT 59 82821203 82821221 GTCACTTTGGCAATGGGTG 60 NA Rattus norvegicus 81 Sdc3 ENSRNOG00000011927 ENSRNOT00000048781 1 1 1 189 5 148951970 148951988 CACAGCCAATGAAGTGGTG 60 148952141 148952782 TACGATCACAGCTACGAGC 59 NA Rattus norvegicus 81 Sdc3 ENSRNOG00000011927 ENSRNOT00000048781 3 1 1 191 5 148951970 148951988 CACAGCCAATGAAGTGGTG 60 148952143 148952784 CCTACGATCACAGCTACGA 59 NA Rattus norvegicus 81 XAF1 ENSRNOG00000037371 ENSRNOT00000056551 1 1 2 80 10 58866750 58868883 CCCACATGAAACAGTGTTCG 60 58868926 58868944 GAAGGGTTGAGGGAAGGAC 60 NA Rattus norvegicus 81 Zfhx4 ENSRNOG00000008765 ENSRNOT00000011641 3 1 1 80 2 98448688 98456248 CAGCCTCAGAAGAACTCAG 58 98448626 98448646 GTGTCTCTTTCTCATCATCCT 57 NA Rattus norvegicus 81 Fbxo39 ENSRNOG00000014953 ENSRNOT00000020071 3 1 1 80 10 58877485 58877504 GGACGTTAAGTTTGTGGAGC 60 58877544 58878136 TAAATTCTCACCTTCAGTGTGC 59 NA Rattus norvegicus 81 Wiz ENSRNOG00000006217 ENSRNOT00000008303 1 1 1 80 7 14400948 14400966 ATCTTCACACTACCTGCCC 59 14388442 14400905 AAGTTAGCCACAGAAATGCC 59 NA Rattus norvegicus 81 LOC499746 ENSRNOG00000010002 ENSRNOT00000013278 1 1 1 80 3 2434195 2434216 TTACATCAATGGAGGCAAACAC 60 2434037 2434154 ACAGTAGCATTGGACTGGG 59 NA Rattus norvegicus 81 Tmprss2 ENSRNOG00000001976 ENSRNOT00000066413,ENSRNOT00000002713 3 2 2 80 11 38082811 38083311 TGCTTTGGAAGTTCTGGGA 59 38082749 38082768 GGGAGGAGCTGATACATGTC 60 NA Rattus norvegicus 81 Vangl2 ENSRNOG00000004889 ENSRNOT00000006849 2 1 2 86 13 90401210 90401228 CATCTTCCTGCTTTGCCTC 59 90391586 90401160 TTCAATCGACAGCTCCCTG 60 NA InUTR Rattus norvegicus 81 Adprhl2 ENSRNOG00000010849 ENSRNOT00000014586 1 1 1 80 5 144337594 144337612 CTGAAGAAGGTGGGAGAGC 60 144337111 144337550 AGCGATTCCATTCCCTAGC 60 NA Rattus norvegicus 81 Dfnb59 ENSRNOG00000038165 ENSRNOT00000058093 1 1 1 80 3 63510439 63510458 CAAATTCACATCCACACCCT 59 63510498 63511326 TGATAAGATGAAATACCGGCTG 58 NA Rattus norvegicus 81 Serpinb10 ENSRNOG00000002417 ENSRNOT00000003314 2 1 1 159 13 27469107 27469125 ATCCATCAACCAGTTCGCT 59 27469246 27471410 ATGAAGTACCTGGGACATCTG 59 NA Rattus norvegicus 81 LOC680236 ENSRNOG00000048486 ENSRNOT00000071886 2 1 1 80 X 22791132 22791150 GAGGCAAAGAGGTTCTGTG 59 22791192 22791760 CTCAAATGAGACAGGATGCTG 59 NA Rattus norvegicus 81 LOC100366054 ENSRNOG00000033515 ENSRNOT00000046076 1 1 1 84 13 88299522 88300018 TGTGACTGCTACATTCAGGAG 60 88300064 88300082 TCTTGAGGACATCCAGCAC 59 NA Rattus norvegicus 81 Gfap ENSRNOG00000002919 ENSRNOT00000034401 1 1 1 80 10 90992755 90992774 AAATCTGTGTCAGAAGGCCA 60 90992186 90992712 CTCCTTAATGACCTCGCCA 59 NA Rattus norvegicus 81 Srsf4 ENSRNOG00000010007 ENSRNOT00000013301 2 1 1 80 5 150050599 150050618 TGAACGAGTCATTGTTGAGC 59 150050660 150051439 CGATAACCATATCCACTGCG 59 NA Rattus norvegicus 81 Atp1a2 ENSRNOG00000007290 ENSRNOT00000058143 2 1 1 80 13 90659018 90659487 AGTCAATCCCAGAGAAGCC 59 90658956 90658974 ATCTCATCCAGCTGCTCTG 59 NA Rattus norvegicus 81 Capza1 ENSRNOG00000013538 ENSRNOT00000056015 3 1 1 81 2 207322417 207322438 CATTTGCCCAGTATAACATGGA 59 207321634 207322379 CCATGCTCTGTAATTAAGACCTG 59 NA Rattus norvegicus 81 Hoxc4 ENSRNOG00000016613 ENSRNOT00000022398 1 1 1 90 7 144648436 144648929 AATTCACGTTAGCACGGTG 59 144648983 144649001 TAATTCCAGGACCTGCTGC 60 NA DesignNoJunction Rattus norvegicus 81 Mecom ENSRNOG00000012645 ENSRNOT00000068381 1 1 1 80 2 117401490 117402338 CCCGTGAGGTATAAAGAGGA 58 117401429 117401449 TTTGAGGCTATCTGTGAAGTG 58 NA Rattus norvegicus 81 Polk ENSRNOG00000060626 ENSRNOT00000078639,ENSRNOT00000091418 2 2 2 80 2 27317833 27319362 TTGCCTATTCGAAAGGTTTCTG 59 27317774 27317794 TTCTGTGCAAGTAACAATCCC 59 NA Rattus norvegicus 81 Ly9 ENSRNOG00000025069 ENSRNOT00000035498 3 1 1 80 13 90020102 90020122 CCTACCAGGCTCAAATAATCC 58 90016695 90020061 GTAGCTGCTCATAGATGTGC 59 NA Rattus norvegicus 81 Krt17 ENSRNOG00000026371 ENSRNOT00000005382,ENSRNOT00000084493 1 2 2 80 10 88162498 88162516 ACTGTGGATAATGCCAGCA 59 88162059 88162454 CGTCTCAAACTTGGTACGG 59 NA Rattus norvegicus 81 Elmod2 ENSRNOG00000028176 ENSRNOT00000031614 3 1 1 80 19 24478700 24484279 GACATATTCCAAGAGTAAGGTCC 59 24478642 24478661 ATGATGTCCACTATGCACCT 59 NA Rattus norvegicus 81 Ces1a ENSRNOG00000039725 ENSRNOT00000060929 3 1 1 80 19 15358965 15358984 AAGAACTTCAACACTGTCCC 58 15359027 15360744 ATAGCCCATCATCGTTGGA 59 NA Rattus norvegicus 81 LOC103693683 ENSRNOG00000046663 ENSRNOT00000071897,ENSRNOT00000073643 3 2 4 80 13 91222602 91227124 GAAGTGATTTCTGACTGGCT 58 91222541 91222560 ATGGCACCTTAATGTGATGG 58 NA Rattus norvegicus 81 Map7d3 ENSRNOG00000027831 ENSRNOT00000030445,ENSRNOT00000071516 1 2 2 80 X 159183001 159183743 AAAGAACAGCTACAGAAAGGG 58 159182941 159182962 TCTTTCCTGTTCCTTCTTTCTC 58 NA Rattus norvegicus 81 LOC684444 ENSRNOG00000045818 ENSRNOT00000071167 3 1 1 60 2 29247845 29247863 GCTGGCTAAACTTGCTGTG 60 29247803 29247824 TTAGGAATGGATGAATCTGTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Brs3 ENSRNOG00000000873 ENSRNOT00000001164 1 1 1 80 X 159505724 159505742 TTCATCCGGCTCACTTCTG 60 159505783 159507348 CTTCACGACTGCTTTGTATCTG 60 NA Rattus norvegicus 81 Kif7 ENSRNOG00000026857 ENSRNOT00000033491 1 1 1 80 1 141443937 141443957 TACATCAGAGGAGGAAGAGGA 59 141443476 141443897 CAGTTGCTGATTCCATTCCTG 60 NA Rattus norvegicus 81 Erich6 ENSRNOG00000013662 ENSRNOT00000018294 1 1 1 80 2 148831549 148837199 GTGACTGTAGATAGACTTATGTACC 58 148831493 148831512 AAGCCAACTTTGGTCTTCTG 59 NA Rattus norvegicus 81 Pnrc1 ENSRNOG00000007793 ENSRNOT00000010271 2 1 1 104 5 48503990 48504008 CCTGCTATACAGACAGCCC 60 48502477 48502496 TGTATACCATGCACAAGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Sh2d7 ENSRNOG00000023870 ENSRNOT00000029413 1 1 1 80 8 59117390 59119094 TGAGGAGAGTACAGAGGTACC 60 59119136 59119154 CCTGCAGAAGAGTCATCCA 59 NA Rattus norvegicus 81 Eif1b ENSRNOG00000018848 ENSRNOT00000025615 1 1 1 80 8 129158303 129159538 ACCTCCAATCTTTCGACCC 59 129159579 129159600 TATGAATGTAGTCCTCAGTCCC 59 NA Rattus norvegicus 81 Casq1 ENSRNOG00000006930 ENSRNOT00000009344 3 1 1 80 13 90598613 90599262 GAGTTTCTGCTCGATGTCCT 60 90598552 90598572 CTCGATGTTCTCAAATGCCTG 60 NA Rattus norvegicus 81 Pcsk7 ENSRNOG00000017478 ENSRNOT00000023677 3 1 1 80 8 50204234 50204253 CAGGAGAAATTGCAGCTGTG 60 50204296 50206197 CCCGGATACCTGCTATTCG 60 NA Rattus norvegicus 81 Btbd8 ENSRNOG00000047302 ENSRNOT00000061556 3 1 1 80 14 3332065 3339617 TTTCCAAGGATGATTGTGACC 59 3332005 3332027 GATAATCCTGACTCAGGTAAAGC 59 NA Rattus norvegicus 81 Cst3 ENSRNOG00000005195 ENSRNOT00000007175 1 1 1 80 3 143220857 143220877 GAACTACATGTACCAAGTCCC 58 143219982 143220815 AGAGTGCCTTCCTCATCAG 59 NA Rattus norvegicus 81 Plac1 ENSRNOG00000002379 ENSRNOT00000003235 3 1 1 95 X 158094072 158132623 CCAGAAGGAGAATCCCTTCC 60 158132679 158132699 ACCTCCTAGGAACTTGATGAG 59 NA InUTR Rattus norvegicus 81 Foxo3 ENSRNOG00000000299 ENSRNOT00000000327,ENSRNOT00000076818 2 2 2 104 20 46429963 46429982 TTCAAGGATAAGGGCGACAG 60 46505776 46505794 AGTCCCTTCGTTCTGAACC 59 NA DesignNoJunction Rattus norvegicus 81 Cfap97 ENSRNOG00000032192 ENSRNOT00000045721 2 1 1 80 16 49298216 49309702 TCATCTGTTGAAAGCTTTCCTG 59 49298157 49298179 CTAGGTATTATTGAAGGCTGCTC 59 NA Rattus norvegicus 81 Lace1 ENSRNOG00000043033 ENSRNOT00000076211 1 1 3 60 20 47159155 47159175 GATACACCGCCTTAAACAGAG 59 47159115 47159135 GTACGACTTAGCCATGAATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr655 ENSRNOG00000057654 ENSRNOT00000082255,ENSRNOT00000092045 1 2 2 60 3 77152830 77152849 CGACAACTCTGTAACATCCT 57 77152872 77152890 TACCTGCATGAAGAAAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lce1c ENSRNOG00000009383 ENSRNOT00000012420 1 1 1 167 2 192960173 192960191 CAAAGTGTCCTCCCAAGTG 58 192960024 192960042 TACAGCATCCAGAGCTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lce1c ENSRNOG00000009383 ENSRNOT00000012420 2 1 1 172 2 192960173 192960191 CAAAGTGTCCTCCCAAGTG 58 192960019 192960037 ACTGCTACAGCATCCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Actl9 ENSRNOG00000049571 ENSRNOT00000075258 1 1 1 60 7 18311369 18311388 AACCATCTTACTGCCTTCCT 59 18311411 18311429 CCTGTTGCAATGAGAAGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910143 ENSRNOG00000050374 ENSRNOT00000075415 1 1 1 80 14 1570120 1573690 AAGGAAACAATGGTTCAGCAC 60 1570060 1570078 CAATGTACGTGGCAACTGG 60 NA Rattus norvegicus 81 Becn1 ENSRNOG00000020513 ENSRNOT00000027868,ENSRNOT00000075886,ENSRNOT00000082010 2 3 6 80 10 89221805 89221824 TCCATTACTTACCACAGCCC 60 89218042 89221764 TCAATAAATGGCTCCTCTCCT 59 NA Rattus norvegicus 81 Mme ENSRNOG00000009514 ENSRNOT00000088565,ENSRNOT00000042576 2 2 2 80 2 153862098 153865396 AGAAATCAGATCGTCTTCCC 57 153865437 153865457 CCCATAGTTCAATGAGTTGGA 58 NA Rattus norvegicus 81 Zfp217 ENSRNOG00000021787 ENSRNOT00000034669,ENSRNOT00000081593 2 2 2 99 3 166987073 166987091 GTGTTGACTGTGCAGAAGC 60 166985501 166987010 GCCTCTTTCCTTCAAGGGA 59 NA Rattus norvegicus 81 Rad9a ENSRNOG00000018729 ENSRNOT00000025317 1 1 1 80 1 219449331 219449716 TAAGATCCTGATGAAGTCCTTCC 60 219449273 219449291 GAGATGCAGCACTTCTCCA 60 NA Rattus norvegicus 81 Ccdc93 ENSRNOG00000002514 ENSRNOT00000003435 1 1 1 80 13 37404004 37407323 TTTCGACAAGGTAGTAGGAGG 59 37407364 37407383 TCCTGAAAGAGCAAATCCAC 58 NA Rattus norvegicus 81 Stk3 ENSRNOG00000011278 ENSRNOT00000065722 3 1 1 80 7 73848834 73848856 GAGTGAAGACAGTTTGACTAAGC 60 73846756 73848797 ACACTTCCATAAGACCCTTCTC 60 NA Rattus norvegicus 81 Olr78 ENSRNOG00000015760 ENSRNOT00000021098 2 1 1 60 1 168238491 168238512 GCTTACACCAAGATGTTCTGAG 59 168238531 168238551 CCATAGACACTGTTGATCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dlx1 ENSRNOG00000001520 ENSRNOT00000002078 3 1 1 80 3 58166578 58166598 CAAACTCAGTACCTAGCTCTG 58 58166638 58167838 CCATATCTTGACCTGAGTCTG 58 NA Rattus norvegicus 81 LOC681006 ENSRNOG00000025953 ENSRNOT00000039453 3 1 1 81 1 279938156 279938178 ACCCTTCTCCTAAAGTCTTACAG 59 279938012 279938115 CTTGGGAGTGTTTGACCTG 58 NA Rattus norvegicus 81 Tceal3 ENSRNOG00000049020 ENSRNOT00000071874 2 1 1 60 X 107323592 107323610 CTTACAGGACAGGCATGTG 58 107323632 107323652 CCTTGTCATATCTGCACACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100364989 ENSRNOG00000037452 ENSRNOT00000056688 1 1 1 81 X 159097014 159097032 TCAGGCCATCTTCGATCAG 59 159097075 159099627 GGACTTAAGCTCAATGAGACC 59 NA Rattus norvegicus 81 Mobp ENSRNOG00000018700 ENSRNOT00000025279 2 1 2 265 8 128842058 128842076 GAGGACTGGATCTGCTGTG 60 128842514 128842533 GGCTGTTTAGACTTCTGAGG 58 NA DesignNoJunction Rattus norvegicus 81 Ddah2 ENSRNOG00000000842 ENSRNOT00000001118,ENSRNOT00000083353,ENSRNOT00000088251 2 3 3 120 20 5050802 5050820 CCTCCTGAGGAATCACTGC 60 5050904 5051058 GGACTCCATCAACCTCAGG 60 NA Rattus norvegicus 81 Ahcyl1 ENSRNOG00000018569 ENSRNOT00000066501,ENSRNOT00000079993 2 2 2 80 2 210443538 210444065 GCTACAACACAGGCTTTGG 60 210443476 210443495 AGGAAGCAAGTACACATCCT 59 NA Rattus norvegicus 81 Ppwd1 ENSRNOG00000012505 ENSRNOT00000016863 3 1 1 81 2 34295009 34295028 GAAACGAGTTTCCGACAGTG 60 34293100 34294965 CTTGGGACACTCAACAGGA 59 NA Rattus norvegicus 81 Ankrd37 ENSRNOG00000031335 ENSRNOT00000039909 1 1 1 101 16 49463462 49464338 CAACCAACAGGATGTGTTGG 60 49464402 49464420 TCAATCCGGACATCACTGG 60 NA Rattus norvegicus 81 Gpatch8 ENSRNOG00000021044 ENSRNOT00000050474 1 1 1 80 10 90452609 90452630 GAACAGATCCTATTCCAATCGT 58 90451886 90452568 CTTCGGCATAATCCAGCTC 59 NA Rattus norvegicus 81 B3galnt1 ENSRNOG00000012019 ENSRNOT00000016012 1 1 1 80 2 166228471 166231375 CTGTGGTTAAGGACCTGTG 58 166228409 166228427 CCTATTGGGAATGGCAGTC 58 NA InUTR Rattus norvegicus 81 Nelfa ENSRNOG00000015474 ENSRNOT00000021593 3 1 1 81 14 82114293 82114317 CTGGATATTTCTGAGCTGAATACAG 60 82114352 82114811 CTACCACTTCTGTGTCTAAAGTC 59 NA Rattus norvegicus 81 Nktr ENSRNOG00000049128 ENSRNOT00000071152 1 1 1 80 8 130385530 130385548 GGAAGGAGGAGATGCAGAG 59 130385591 130386737 GGTCACTTAGCTTGTCTCCT 59 NA Rattus norvegicus 81 LOC365791 ENSRNOG00000038242 ENSRNOT00000090907,ENSRNOT00000048546 1 2 2 80 2 137325786 137325806 CAAATTATACGACCAGTGGCT 59 137325339 137325746 TCTAGAAGACTCTTCACTGCT 58 NA Rattus norvegicus 81 LOC501033 ENSRNOG00000013399 ENSRNOT00000018553 2 1 1 92 8 96977748 96982847 ATCAAAGGAGGCAGACAGG 59 96977674 96977692 CTGAACACCTGTTCCACCA 60 NA Rattus norvegicus 81 Chchd4 ENSRNOG00000033038 ENSRNOT00000043517 3 1 1 60 1 248403080 248403099 ATGATCCCTATGAGGAGCAC 59 248403119 248403140 GGGCAATTCCAGTTAATGTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tiparp ENSRNOG00000011238 ENSRNOT00000015387 3 1 1 83 2 157335647 157340394 CATATTTACAGACACTTGGTGG 57 157340436 157340456 CATCTGGACAGATGATTTGTG 57 NA Rattus norvegicus 81 Pdcl3 ENSRNOG00000013286 ENSRNOT00000017882 3 1 1 80 9 45678362 45679257 CCTGTACAAACAAGGGATTCC 59 45679298 45679317 TTCACATCGGGAAACTTCCT 59 NA Rattus norvegicus 81 Ube2s ENSRNOG00000016930 ENSRNOT00000022977 3 1 1 82 1 72580546 72581164 TGTTGAAGTCATGAACTCCA 57 72581209 72581227 CTGTCAGTGTTGTCACCTC 58 NA InUTR Rattus norvegicus 81 Nkd1 ENSRNOG00000014293 ENSRNOT00000019301 1 1 1 80 19 19443853 19445639 CAGCTCAAGTTTGAAGAACTG 58 19443793 19443813 GTCATACAGAGTGAAAGTCCA 58 NA Rattus norvegicus 81 Tatdn1 ENSRNOG00000047198 ENSRNOT00000070909 1 1 1 84 7 98792757 98792779 GAGAAGAAATAGAGATCGGTGTG 59 98790590 98790612 AAGGTCCAAGTCCAAAGCA 60 NA Rattus norvegicus 81 LOC100910447 ENSRNOG00000003863 ENSRNOT00000005270 1 1 1 128 19 26143080 26143098 AATCAGAAGAGGAAGGGCG 60 26145458 26145736 TGTTAATACCTCATCCTCCGTC 60 NA Rattus norvegicus 81 Mfsd9 ENSRNOG00000023129 ENSRNOT00000038915 1 1 1 80 9 47499446 47506974 TCAATGCTGGTCTAGTCTGG 59 47499385 47499403 TCTGATCCAAGCTCCAACC 59 NA Rattus norvegicus 81 Ndufv1 ENSRNOG00000018117 ENSRNOT00000024517 1 1 1 80 1 219255268 219255373 TGAGAAACATGCTGGTGGT 60 219255206 219255224 ATCAGTGGAGTGGATGAGC 59 NA Rattus norvegicus 81 Rhog ENSRNOG00000020393 ENSRNOT00000027641,ENSRNOT00000076592 2 2 3 138 1 167337327 167347639 AGGTCACTACTTCCAGTGG 58 167337207 167337225 TAGCAGATGAGAAGGCACG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Grb14 ENSRNOG00000052498 ENSRNOT00000089243 2 1 1 80 3 50937812 50939051 CACTTTCAAATTATACCCGTGG 58 50937753 50937774 GAGATCTGTGAACTTCGTATGG 59 NA Rattus norvegicus 81 Rplp2 ENSRNOG00000002116 ENSRNOT00000038691 2 1 1 123 1 213991629 213991647 GTTGCCTCTTATCTGCTGG 58 213991732 213992429 CACTGATGACCTTGTTGAGTC 59 NA Rattus norvegicus 81 Ptx3 ENSRNOG00000012280 ENSRNOT00000016541 1 1 1 77 2 158098108 158098126 AATGGACTTCATCCCACCG 60 158098593 158098611 GATGAACAGCTTGTCCCAC 59 NA DesignNoJunction Rattus norvegicus 81 Tsks ENSRNOG00000020443 ENSRNOT00000049584 2 1 1 80 1 100947076 100948054 AGTCAATTGAAGGAGAACTGC 59 100948095 100948114 GTTCTGCTTCAGGACATTGG 59 NA Rattus norvegicus 81 LOC100909517 ENSRNOG00000046230 ENSRNOT00000068228 2 1 1 60 X 24629618 24629639 AGGGTCAGCATAATCAAATCCT 60 24629654 24629678 CTGAGCACTTGTAACATACTATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Timm50 ENSRNOG00000037638 ENSRNOT00000057096 1 1 1 80 1 85475363 85475471 TTACAGACAGATGATCATCGAG 58 85475512 85475530 TAAGGTGGCTGGTAGTAGG 58 NA Rattus norvegicus 81 Olr98 ENSRNOG00000033060 ENSRNOT00000045286 1 1 1 60 1 168519888 168519906 GCACTACTCAACCATCCTC 58 168519930 168519948 GCTCAAGCCAATTACACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1471 ENSRNOG00000061453 ENSRNOT00000072328 3 1 1 80 10 60020293 60020312 CTATGATGTGCACAGTGGTG 59 60020229 60020252 GTAGTGCCTCTTTCATGTCTC 59 NA Rattus norvegicus 81 Psma5 ENSRNOG00000019868 ENSRNOT00000026928 1 1 1 80 2 211062533 211067207 GAAGTTTACCACAAGTCTATGACTC 60 211067244 211067263 CTTCTCCTCCATGACTTGCT 60 NA Rattus norvegicus 81 Cpq ENSRNOG00000005931 ENSRNOT00000008211 1 1 1 80 7 71880403 71880427 AAAGACCTATCCAGATACAGATTCC 60 71880465 71975573 ACCAGGACAACTTCCTCTG 59 NA Rattus norvegicus 81 Bbs12 ENSRNOG00000007510 ENSRNOT00000009898 1 1 1 60 2 124054768 124054787 GGCTGTTGAAGATTGTCTCC 59 124054808 124054828 TGACATCACTGACACTATCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055506.1 ENSRNOG00000046725 ENSRNOT00000073906 2 1 1 80 7 4519006 4519025 CCCTCTGCTAAGCAAAGGA 59 4519067 4519087 ACAACTTCCATAGGTGATGGA 59 NA Rattus norvegicus 81 Osbp2 ENSRNOG00000019645 ENSRNOT00000065501 2 1 1 80 14 83957712 83967151 ATGATCAACGCCTGTAAGGA 59 83957651 83957670 CTGCTCATAATTCAGAGCCC 59 NA Rattus norvegicus 81 Pc ENSRNOG00000019372 ENSRNOT00000026316,ENSRNOT00000082388,ENSRNOT00000087432 2 3 3 80 1 219856718 219857179 TGGTCTTCAAGTTCTGTGAG 58 219857222 219857240 TTGGCAGGTAGTTAAGGGA 58 NA Rattus norvegicus 81 Sept7 ENSRNOG00000006545 ENSRNOT00000063967,ENSRNOT00000008838,ENSRNOT00000081574 3 3 3 80 8 26434150 26447688 GGTAGTAGGTGAATCTGGACTG 60 26447723 26447747 GGATACTCTGGAGAATACAAATCTG 59 NA Rattus norvegicus 81 Olr378 ENSRNOG00000031224 ENSRNOT00000044719 3 1 1 60 1 230664589 230664611 AGTATCTGTCTTCTACACTGTGG 59 230664551 230664573 TCTCAGGGTATAGATAAGAGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cnnm4 ENSRNOG00000015886 ENSRNOT00000021434,ENSRNOT00000079234 1 2 2 80 9 43077782 43078065 CACGTACACTGACAATCGA 58 43078109 43078127 TTGTCAGCATCCTTGAAGG 58 NA Rattus norvegicus 81 LOC679811 ENSRNOG00000009837 ENSRNOT00000013260 2 1 1 80 2 182920564 182922866 GGAAACATGGAAATAACCAGC 58 182920504 182920525 GCTTTGTATCAACTGCTTTCAC 59 NA Rattus norvegicus 81 Itga7 ENSRNOG00000007905 ENSRNOT00000030453,ENSRNOT00000061657 2 2 2 80 7 3378809 3378827 CCACTCTACAGCTTTGACC 58 3378870 3379099 CATGTACTCCTCCAGAAAGG 57 NA Rattus norvegicus 81 LOC100361231 ENSRNOG00000029588 ENSRNOT00000042579 3 1 1 80 1 217725407 217725426 AGCTCCTTGTCTATAGAGCA 58 217725469 217728104 CGATGTCGACTCTTCTTGG 58 NA Rattus norvegicus 81 Cd63 ENSRNOG00000007650 ENSRNOT00000090381,ENSRNOT00000010180 3 2 2 80 7 3334504 3334526 CATCTTCCTGTCTCTTATCATGC 59 3334566 3334675 TCTGACTTCACCTGGTCTC 58 NA Rattus norvegicus 81 Akap1 ENSRNOG00000002373 ENSRNOT00000003251 1 1 2 60 10 76164135 76164700 GCAGATCATTCAGGAGTTGC 59 76164094 76164112 ACCCTCCGTTACCAAAGTG 60 NA DesignRelaxed Rattus norvegicus 81 Hmg1l1 ENSRNOG00000034130 ENSRNOT00000047553 1 1 1 60 X 115351210 115351231 GATGCTTCTGTCAACTTCTCAG 59 115351252 115351270 ACATGGTCTTCCACCTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmsb4x ENSRNOG00000047931 ENSRNOT00000071708 2 1 1 86 X 28594521 28594542 GAAGAAGACAGAAACACAAGAG 57 28594985 28595003 CCTCATTACGATTCGCCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gstm7 ENSRNOG00000018937 ENSRNOT00000081501,ENSRNOT00000025939 1 2 3 113 2 210782716 210782734 CTGGGTTACTGGGACATCC 60 210782033 210782371 GTCATAGTCGGGAGCATCC 60 NA Rattus norvegicus 81 AABR07012054.1 ENSRNOG00000049530 ENSRNOT00000074187 3 1 1 76 2 184230682 184230701 GTTCATCCATTCACCACAGC 60 184230740 184230758 ACATTCCTTGGGACAGAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr61 ENSRNOG00000061614 ENSRNOT00000091372 1 1 1 60 1 167884167 167884187 GCTGAAACGACTGAACTACTG 59 167884127 167884148 ATGGAAACAGAATGAGTGAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr61 ENSRNOG00000061614 ENSRNOT00000091372 2 1 1 60 1 167884395 167884415 GTTTGACTATCGCTTCATCGG 60 167884355 167884375 GGAGTGTAGGAAGAACATCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029943.1 ENSRNOG00000031597 ENSRNOT00000047762 1 1 1 86 10 60684721 60684739 GTACACAGTGGTGACTCCC 60 60684652 60684676 CAGATAACTCTTAGGCTTAAAGGG 59 NA Rattus norvegicus 81 AABR07029943.1 ENSRNOG00000031597 ENSRNOT00000047762 3 1 1 87 10 60684722 60684740 TGTACACAGTGGTGACTCC 59 60684652 60684676 CAGATAACTCTTAGGCTTAAAGGG 59 NA Rattus norvegicus 81 Ywhah ENSRNOG00000055471 ENSRNOT00000086769 3 1 2 80 14 83054458 83061087 GAATTTCCCAGGTGACAGAG 58 83054397 83054417 CTACATTCTTGTAGGCCACAG 59 NA Rattus norvegicus 81 Olr698 ENSRNOG00000006445 ENSRNOT00000008435 3 1 1 60 3 78235671 78235692 TCTGTTTGTCACATTCTTGCTC 60 78235632 78235650 CATGATGAGCAGATTGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gdf11 ENSRNOG00000007610 ENSRNOT00000010035 1 1 1 74 7 3315394 3315412 GAGACGGTCATAAGCATGG 58 3310967 3310985 GAAATGGCAACACAGAGGG 59 NA DesignNoJunction Rattus norvegicus 81 Cyp2e1 ENSRNOG00000012458 ENSRNOT00000078080,ENSRNOT00000016883 1 2 2 80 1 213516907 213516925 GACAAGAAGTGTCTGAGGC 58 213516968 213517313 ATTGTAAAGCTGGATCCAGG 58 NA Rattus norvegicus 81 Erich3 ENSRNOG00000009533 ENSRNOT00000012638 2 1 1 80 2 261004126 261010972 CTGCTTGAGAAAGACACCT 57 261011014 261011034 CCCATTCAGATAGAAGGTGAG 58 NA Rattus norvegicus 81 Rasal1 ENSRNOG00000001374 ENSRNOT00000001856 1 1 1 80 12 41431397 41431664 ACAGTTCATGAAACTCGTGG 59 41431336 41431354 TTCTTCTCCTCGAAGACGC 60 NA Rattus norvegicus 81 RT1-CE4 ENSRNOG00000039744 ENSRNOT00000047779 1 1 3 86 20 4772559 4772671 CAGAGATGGGAGCCTTCTC 59 4772491 4772509 TACAAAGACAGCCACAGCT 59 NA Rattus norvegicus 81 Gulp1 ENSRNOG00000003242 ENSRNOT00000004463,ENSRNOT00000065212,ENSRNOT00000085908 2 3 3 80 9 51469350 51469368 CTTGGCAGTACTGAAGTGG 58 51469412 51479677 GTGTCTTGCAAACTTCAGC 58 NA Rattus norvegicus 81 Fgfr3 ENSRNOG00000016818 ENSRNOT00000023144,ENSRNOT00000080695 1 2 2 80 14 82275648 82275666 AGAAGCTATTGGCATCGAC 58 82275505 82275605 TCAGTGGCATCATCTTTCAG 58 NA Rattus norvegicus 81 Nlrp5 ENSRNOG00000022994 ENSRNOT00000041542 1 1 1 80 1 71476978 71476996 GGGTGGATATCAGTGACCT 58 71474094 71476934 GCTTGCATTGTGTCTTCTG 58 NA Rattus norvegicus 81 Olr1105 ENSRNOG00000032839 ENSRNOT00000051304 3 1 1 60 7 139953516 139953536 TCCTCAACATACTTCTGGCTG 60 139953476 139953494 AAGTGAGGGATGGTTTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mnt ENSRNOG00000002894 ENSRNOT00000003933 1 1 1 98 10 61692130 61692148 TTTGAGACTCTGAAGCGCA 60 61692209 61696950 CTTCAGGGACTGGATGTACC 60 NA Rattus norvegicus 81 Mnt ENSRNOG00000002894 ENSRNOT00000003933 3 1 1 104 10 61692130 61692148 TTTGAGACTCTGAAGCGCA 60 61692216 61696956 CTTCCTCTTCAGGGACTGG 59 NA Rattus norvegicus 81 LOC100360049 ENSRNOG00000046322 ENSRNOT00000030776 3 1 1 65 8 37349671 37349690 GAAAGGACATCTTGCTGCTC 59 37348786 37349644 ATGTCAAAGCTTGCATGGAG 59 NA DesignRelaxed Rattus norvegicus 81 Dcaf7 ENSRNOG00000042245 ENSRNOT00000063858 3 1 1 81 10 94242920 94243384 CCTTCTAGGAACCTCAAGCA 59 94243428 94243446 AAGGTTCACTCGTCCTAGC 59 NA Rattus norvegicus 81 Erlin2 ENSRNOG00000013763 ENSRNOT00000018973 2 1 1 80 16 69191699 69193733 TATTACAGAGGTGGTGCCC 59 69191637 69191657 CTTGTAGGATGTGATGAACGG 59 NA Rattus norvegicus 81 Pkd1l1 ENSRNOG00000004865 ENSRNOT00000006498 2 1 1 80 14 89144747 89144765 CCTCAACCTCCATCATCCT 59 89141839 89144705 AAGTCCAGTGATACCTGAGAG 59 NA Rattus norvegicus 81 Txndc9 ENSRNOG00000018593 ENSRNOT00000025098 1 1 1 80 9 44654524 44656404 AGCAGAAACAAGAATGGCT 58 44654462 44654482 TGACCTCTTGAAAGAAGTCTC 57 NA Rattus norvegicus 81 Taok1 ENSRNOG00000015692 ENSRNOT00000021368 1 1 1 80 10 62570797 62570819 GAGATGTGCGTACTAATGAAGTG 60 62570855 62574803 TATCCTGCCATTTCTCAGTAGAC 60 NA Rattus norvegicus 81 Taok1 ENSRNOG00000015692 ENSRNOT00000021368 2 1 1 80 10 62577492 62579365 GATCCATAGAGATATCAAAGCAGG 59 62579403 62579422 GAAGCAGATCCAAAGTCAGC 59 NA Rattus norvegicus 81 Ankrd13a ENSRNOG00000001204 ENSRNOT00000001595 1 1 1 80 12 47567513 47567533 AACAATGTGAGCGTGATAACC 59 47566369 47567474 ATTCCGGTCCTCTTTGTATCTC 60 NA Rattus norvegicus 81 Xcr1 ENSRNOG00000006620 ENSRNOT00000008747 2 1 1 132 8 132915612 132919028 TCAGACTCAGATGCTCTCAG 59 132915499 132915519 GGACAATGGTGAAGATGATGG 59 NA Rattus norvegicus 81 Zbtb47 ENSRNOG00000019382 ENSRNOT00000043346 1 1 1 80 8 130405492 130405510 CCTTCAAGCGCAGTATGTC 59 130405554 130406451 CATTGCAGTTCTCACAGCG 60 NA Rattus norvegicus 81 Lppr5 ENSRNOG00000016878 ENSRNOT00000022905 1 1 1 80 2 219920087 219920108 GCAGAATATCGGAATCATTGGT 59 219910771 219920049 GCATACAACCAGAAATACTGCT 59 NA Rattus norvegicus 81 Lppr5 ENSRNOG00000016878 ENSRNOT00000022905 2 1 1 80 2 219920081 219920099 CGGAATCATTGGTCAGACG 59 219910762 219920039 ATTTACCACGCATACAACCAG 59 NA Rattus norvegicus 81 LOC684170 ENSRNOG00000048866 ENSRNOT00000067344 3 1 1 60 1 167992373 167992394 CATGAACCGATGTACTATTTCC 57 167992334 167992352 AAACAGTCAAACCCAGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Erbb2ip ENSRNOG00000047137 ENSRNOT00000075196 2 1 1 80 2 33918516 33918536 AACAACTGAGTGGATTGAGAG 58 33917925 33918477 GTCTCAAACTACCAATAAACCC 57 NA Rattus norvegicus 81 Ubxn8 ENSRNOG00000015109 ENSRNOT00000020347 1 1 1 80 16 62252736 62256592 CGAGTCTCGGAATTAAAGATCTC 59 62256631 62256650 CGGAAATGACGATCGTAAGC 60 NA Rattus norvegicus 81 RGD1563217 ENSRNOG00000036713 ENSRNOT00000047477 2 1 1 80 1 198266635 198267037 GACTGTAGAAACAGCACCC 58 198266573 198266592 GGCTTGTCTATGAAGAGCTG 59 NA Rattus norvegicus 81 Hirip3 ENSRNOG00000029061 ENSRNOT00000039964 3 1 1 80 1 198299041 198299060 AAGTTAAGAGGTCTCCTGCT 58 198299101 198299377 TAGAGCTGGATTCTGACTCTG 59 NA Rattus norvegicus 81 LOC691491 ENSRNOG00000045737 ENSRNOT00000048862 1 1 1 85 16 66381094 66381112 AGTGTCAATTCGAGAGGGA 58 66381161 66382521 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 Azi2 ENSRNOG00000010096 ENSRNOT00000013450,ENSRNOT00000092142 3 2 2 82 8 126421644 126422251 CAGACTGGAGAAGATAAGTAAAGAC 59 126422288 126422309 GGAGCTCTACTTCTTTACACTG 58 NA Rattus norvegicus 81 LOC100361828 ENSRNOG00000039445 ENSRNOT00000060446 1 1 1 90 8 37025858 37026103 TTTGAAACAGGCTTCCCTG 58 37025786 37025804 CTCTTGTAGTGCACGTCTG 58 NA Rattus norvegicus 81 Nr2f2 ENSRNOG00000010308 ENSRNOT00000084336,ENSRNOT00000014152 3 2 2 83 1 131449145 131451942 TTCACCTCAGATGCCTGTG 60 131449080 131449100 GTACTCTTCCAAAGCACACTG 59 NA Rattus norvegicus 81 Ano10 ENSRNOG00000000219 ENSRNOT00000035371 2 1 1 80 8 130908249 130909426 TTTCCACGGTAACAATGATGAC 59 130908190 130908212 GCTCTAAGATTCTCAAGTTCGTG 60 NA Rattus norvegicus 81 LOC100360143 ENSRNOG00000048341 ENSRNOT00000071278 3 1 1 85 8 38396581 38397230 GCTTCCTACAAGCTCTGAC 58 38397276 38397297 AGCTTTACAGGTAGAGTATCCT 58 NA Rattus norvegicus 81 Semg1 ENSRNOG00000013776 ENSRNOT00000018420 3 1 1 81 3 160630129 160630387 TTGGACAGTATGGTGGGAC 59 160630066 160630085 AAATTGAGGTGGCCTTTCTG 59 NA Rattus norvegicus 81 Dnaaf3 ENSRNOG00000038600 ENSRNOT00000058900,ENSRNOT00000077719 1 2 2 80 1 72880833 72881004 TCTCCTGTGGGATGATCCA 60 72881046 72881066 CTAATTCCACAACCAGGTTCC 59 NA Rattus norvegicus 81 Map3k6 ENSRNOG00000008936 ENSRNOT00000012463 2 1 1 80 5 151446185 151446313 ATCAGGAACAGGATTCTCGAC 60 151446353 151446373 TAGGAGTATGGATTTGTGCCC 60 NA Rattus norvegicus 81 Dph7 ENSRNOG00000008102 ENSRNOT00000046898 3 1 1 80 3 2171590 2173322 GATGGAATGTGAGAAGAACAGC 60 2173359 2173381 AGTGATAAGGATAGACAGCTCTC 59 NA Rattus norvegicus 81 Zfp26 ENSRNOG00000025937 ENSRNOT00000078192,ENSRNOT00000038084 2 2 2 82 8 21452364 21453110 TCTCCAAGAATGGGAAATGC 58 21452301 21452321 TCCCATTTGACATATCTGACC 58 NA Rattus norvegicus 81 LOC100911807 ENSRNOG00000050492 ENSRNOT00000073395 1 1 1 80 8 118436696 118436715 CCTAGAGGAACTGGACATCC 59 118435422 118436653 TTATGAGCACAGGACAGGT 58 NA Rattus norvegicus 81 Cenpk ENSRNOG00000039740 ENSRNOT00000060962 3 1 1 80 2 34333968 34335211 GAATGAAATGTTAGAGGTCCCAC 60 34335249 34335269 TTCAAGAAAGTCTCACTGGGA 59 NA Rattus norvegicus 81 Ackr2 ENSRNOG00000019472 ENSRNOT00000026343 3 1 1 91 8 130538763 130541013 CAAGCATCAGAACTCGAGAC 59 130541066 130541085 ATAGTCGTAGATGGAGCTGC 59 NA InUTR Rattus norvegicus 81 Bsx ENSRNOG00000024438 ENSRNOT00000028909 2 1 1 153 8 45063979 45063997 AAAGGTTCGAAATCCAGCG 59 45065121 45065139 GCTTTGGGTTCGTCTTGAC 60 NA DesignNoJunction Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000077635 1 1 8 81 20 4443811 4443829 GACTACCAGGTCACTGTCC 59 4443872 4444024 CATCGATCATGGTAGTGATGG 59 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000082951 3 1 8 80 20 4458296 4458316 TACAGATTCCTCCTCTATGGG 58 4458356 4458515 ATTCATCGACTCTGTGTTACC 58 NA Rattus norvegicus 81 RGD1309821 ENSRNOG00000023208 ENSRNOT00000033235 3 1 1 94 5 57878700 57878859 GAAACAAGGACATCAGCACG 60 57878625 57878644 CTTCTCCTGAAGGTTCTGGG 60 NA InUTR Rattus norvegicus 81 Rpl38 ENSRNOG00000029377 ENSRNOT00000046518 3 1 1 60 8 63119488 63119507 GTAAAGTTCAAGGTCCGCTG 59 63119528 63119548 TCTCCTTGTCTGTGATAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lingo1 ENSRNOG00000017193 ENSRNOT00000023084 2 1 1 155 8 61290096 61290114 GTTGTAGGAGGAGACGGAG 59 61276194 61276212 TGGGCATGCTTCTCATACC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Zfp445 ENSRNOG00000025554 ENSRNOT00000034690 2 1 1 80 8 131892193 131892489 AGAACACCAGGAAACTTTGAC 59 131892133 131892152 TGAGCTGAGTTCAAACATCC 58 NA Rattus norvegicus 81 Ndor1 ENSRNOG00000010616 ENSRNOT00000014445 1 1 1 83 3 2474438 2474729 TTACTCCGTGGCGAATCTC 60 2474373 2474391 ATGTTGTCAGGAGGGTCTC 59 NA Rattus norvegicus 81 Ndor1 ENSRNOG00000010616 ENSRNOT00000014445 2 1 1 84 3 2474426 2474444 GAATCTCATTAGGGAGCCC 57 2471356 2474380 CCAGAAGTTCTTCATGTTGTC 57 NA Rattus norvegicus 81 Adgra2 ENSRNOG00000012991 ENSRNOT00000017776 3 1 1 80 16 69106990 69107184 GACTTCTCAGACTAAACATATCTGG 59 69106934 69106952 TCTTAAGGTCTGGCAGCTC 59 NA Rattus norvegicus 81 Ostm1 ENSRNOG00000037647 ENSRNOT00000057116 2 1 1 82 20 47427654 47427672 TCTCTTTCTGCCTGTCGTC 60 47427717 47429844 GACGTTTGGGTAGAATGAGC 59 NA Rattus norvegicus 81 Ppp1r3b ENSRNOG00000011474 ENSRNOT00000051720 1 1 2 106 16 60419348 60427279 TGTACCGGACTTCTAGCCT 60 60419260 60419278 ATCTTGAAGGTGAAGCGCT 60 NA InUTR Rattus norvegicus 81 LOC688390 ENSRNOG00000026080 ENSRNOT00000038842 1 1 1 60 20 47911382 47911400 GAATGTCCCTTAGCCAGGT 59 47911424 47911442 AAAGCTTCCTGGCAAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdfy4 ENSRNOG00000029662 ENSRNOT00000043811 3 1 1 80 16 9273759 9273779 GTTTGTGAGAACTTCACTCTG 57 9268272 9273719 GAAAGGATCGCTGATATTGGA 58 NA Rattus norvegicus 81 Crocc ENSRNOG00000008334 ENSRNOT00000011114,ENSRNOT00000055839 2 2 2 80 5 159566215 159566600 TGATCTCAGTGCCAGAGTG 59 159566153 159566171 TTGACCTGGTCCTTCTCTG 59 NA Rattus norvegicus 81 Cd99 ENSRNOG00000050735 ENSRNOT00000073028 1 1 1 88 20 56196903 56196921 GATAACCTTGGCGCTACTC 58 56195759 56196141 TCTTGTCAGTGTCCTCCAG 59 NA Rattus norvegicus 81 Snrpd2l ENSRNOG00000048758 ENSRNOT00000071064 3 1 1 62 20 28873328 28873346 ACCCAAGAGTGAGATGACC 59 28873284 28873302 CCTGTGTTGAATTCCTCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC367195 ENSRNOG00000031912 ENSRNOT00000050963 2 1 1 60 8 132026811 132026830 GAAGCTCATCTGTGAGAAGG 58 132026770 132026788 AGTCCGGTACATCTGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Helt ENSRNOG00000010785 ENSRNOT00000014360 3 1 1 71 16 49186079 49186322 ACAGAGTTCCGGGAAACTG 60 49186357 49186375 GAATGCAGAGCTCTGAGGT 60 NA DesignNoJunction Rattus norvegicus 81 LOC690386 ENSRNOG00000042383 ENSRNOT00000068374 2 1 1 89 20 11545901 11545919 CTGTGTTCCTTGCTGTGTC 59 11545830 11545848 CAGATGAGAGTCAGGCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910382 ENSRNOG00000046733 ENSRNOT00000074181 2 1 1 60 20 915294 915314 ATCCTTCTCTGTCACAATTCC 58 915336 915354 TATGTAGCCACTTTGAGCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910382 ENSRNOG00000046733 ENSRNOT00000074181 3 1 1 60 20 915294 915314 ATCCTTCTCTGTCACAATTCC 58 915335 915354 TATGTAGCCACTTTGAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccr3 ENSRNOG00000006736 ENSRNOT00000008809 1 1 1 80 8 133038387 133038442 GGTCTTGCAGTATTGGCAG 59 133038486 133038504 ACTGCAGGAAAGATCTCCA 58 NA Rattus norvegicus 81 Defb10 ENSRNOG00000038148 ENSRNOT00000058059 2 1 1 80 16 75198326 75208181 ATGACACTCCAGTTGTTGG 58 75198264 75198282 AGAACCCTTCAAAGAGTCG 57 NA Rattus norvegicus 81 Fut10 ENSRNOG00000050857 ENSRNOT00000071166 2 1 1 84 16 64698047 64703839 GTGACAGTCCAGGTAGTGG 59 64697981 64698001 CATCTTTCTGTCCATCTTGCA 59 NA Rattus norvegicus 81 Sobp ENSRNOG00000000316 ENSRNOT00000000348 2 1 1 81 20 47893698 47893716 AAAGGACCATGGCAATGTG 59 47860758 47893653 TGACACCTCATCTTCTGCT 58 NA Rattus norvegicus 81 Gad1 ENSRNOG00000000007 ENSRNOT00000000008,ENSRNOT00000084375,ENSRNOT00000087712,ENSRNOT00000087134 3 4 4 80 3 56871799 56872980 CTGTTTGCTCAAGATCTGCT 59 56873022 56873041 GAGTATGTCAACCACCTCCA 59 NA Rattus norvegicus 81 Msr1 ENSRNOG00000012779 ENSRNOT00000017339 3 1 1 80 16 56875151 56883394 TGTTGGAATAGTAACAGCTCAG 58 56875092 56875113 GATGTATCACTTGTGTTAGCTG 57 NA Rattus norvegicus 81 Olr1697 ENSRNOG00000046355 ENSRNOT00000051315 3 1 2 81 20 979579 1108981 GGAAATGCTTAGAGATGAGTGTC 59 979520 979538 AACTTGGCAAATGCAAAGC 58 NA Rattus norvegicus 81 Olr1682 ENSRNOG00000050389 ENSRNOT00000075114 3 1 1 81 20 528608 528628 ACCCTCATAATGAATCAGCGT 60 438096 528565 CCACTGTGACACCATAGGT 59 NA Rattus norvegicus 81 RGD1309730 ENSRNOG00000037567 ENSRNOT00000056935 2 1 1 80 3 91100382 91122611 CAGATGAACAAGGATTGGATGG 60 91100323 91100342 AGCAGGAACATAAGCAGGAG 60 NA Rattus norvegicus 81 Tmem50a ENSRNOG00000017279 ENSRNOT00000023221 1 1 1 80 5 153246933 153246954 ATATGGAGCAATTCAACCACTC 59 153244091 153246895 TCGATACTGCGTTAATCATGAG 59 NA Rattus norvegicus 81 Defb40 ENSRNOG00000033538 ENSRNOT00000048827 1 1 1 103 16 75702396 75705335 AGATGAACTCAGGTGCTGG 59 75705401 75705420 ACAGGTGCTGATTAGAACGA 59 NA Rattus norvegicus 81 Defb40 ENSRNOG00000033538 ENSRNOT00000048827 2 1 1 103 16 75702395 75705334 CAGATGAACTCAGGTGCTG 58 75705401 75705419 CAGGTGCTGATTAGAACGA 57 NA Rattus norvegicus 81 Defal1 ENSRNOG00000029462 ENSRNOT00000049394 1 1 1 80 16 75367198 75367791 AAGATTTACGCGTAAGAAGGAC 59 75367832 75367850 TTGATAGCCGAATGCAGCT 60 NA Rattus norvegicus 81 AC111257.2 ENSRNOG00000052837 ENSRNOT00000091296 3 1 1 82 16 81011191 81013411 ATTTCTGCTGGAGCATCAC 58 81011127 81011145 CGTCTGCAATCATGTTTCC 57 NA Rattus norvegicus 81 Eya2 ENSRNOG00000019203 ENSRNOT00000087530,ENSRNOT00000030119 1 2 2 84 3 162368309 162371014 GCTCTTTGCGAAGTCTCAC 59 162371062 162371080 TGTGCTGTACTGTGTCTGG 60 NA Rattus norvegicus 81 Ube2l6 ENSRNOG00000030467 ENSRNOT00000044319 1 1 1 80 3 72202122 72205563 AGGCCTATCAAGTCTTGGAG 59 72205606 72205624 CAGCTAGTTCCAAACGCAC 60 NA Rattus norvegicus 81 Pigu ENSRNOG00000025181 ENSRNOT00000038809 2 1 3 80 3 150877551 150877680 CTTAACAAGGTCGTCACTCC 58 150877490 150877509 ATCCAACACCTCAGATTCCT 59 NA Rattus norvegicus 81 Pla2g2f ENSRNOG00000016798 ENSRNOT00000022559 1 1 1 86 5 157194942 157195757 ATGAGATGGACTGGTGCTG 60 157194874 157194892 CATAGTGGTCCACGTAGGG 59 NA Rattus norvegicus 81 Rbm39 ENSRNOG00000049814 ENSRNOT00000065729 3 1 1 80 3 152242768 152245567 TTCTCTACAGTAGGAAAGGTTCG 60 152242710 152242729 CACATAGGCGATTCCTTTGG 59 NA Rattus norvegicus 81 Tgif2 ENSRNOG00000042374 ENSRNOT00000066341 3 1 1 82 3 152913433 152921917 GTGCTGCAGATATGTAACTGG 59 152921961 152921979 TTAGGGTCTTTGCCATCCT 58 NA Rattus norvegicus 81 Adprhl1 ENSRNOG00000019504 ENSRNOT00000026392,ENSRNOT00000057740 1 2 4 80 16 81627234 81627256 ATCAGAGAAGACTCAGAAGTCAC 60 81627292 81627458 CCATTTCTTGTAGGTCTTGTCTC 59 NA Rattus norvegicus 81 Nipsnap3b ENSRNOG00000010332 ENSRNOT00000013759 1 1 1 80 5 69844214 69844233 TGGATGAACAAGAGGTTGAG 58 69844274 69847015 GTTCATAGACTCCTTCCTTGG 58 NA Rattus norvegicus 81 AC127963.1 ENSRNOG00000048080 ENSRNOT00000075547 1 1 1 75 3 173838962 173838980 AAGAAACTCCTGGCTGACC 60 173838758 173838776 TGATGTCTTCCTTCTCGGC 60 NA DesignNoJunction Rattus norvegicus 81 Lig4 ENSRNOG00000014605 ENSRNOT00000019615 2 1 1 113 16 85332096 85332115 ACTGGGATTTACAGGTTGCT 59 85334903 85334921 GAGCACAAGTCTGCAAAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Lig4 ENSRNOG00000014605 ENSRNOT00000019615 3 1 1 114 16 85332095 85332114 GACTGGGATTTACAGGTTGC 59 85334903 85334921 GAGCACAAGTCTGCAAAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Hoxd10 ENSRNOG00000001581 ENSRNOT00000002148 1 1 1 80 3 61614962 61616343 GAGAAGGAAAGCAAAGAGGA 58 61616386 61616404 CCTCTTCTTTCTGCCACTC 58 NA Rattus norvegicus 81 Atp4b ENSRNOG00000018543 ENSRNOT00000025958 3 1 1 96 16 81139507 81139525 CTACAGAATTGCTCAGGCC 58 81138524 81139447 GCAGGAACTTGACAATCCT 58 NA Rattus norvegicus 81 Sp5 ENSRNOG00000054086 ENSRNOT00000078819 3 1 1 130 3 56767854 56767872 TACCCTTACGAGTTCTCGC 59 56767966 56767984 GGTAGCAGGTTGGAGTAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phf21a ENSRNOG00000006063 ENSRNOT00000067664 1 1 1 80 3 81262693 81262712 GAGACCACATTCACTTTCCC 59 81262754 81268003 CTCATGGATATCACCGTCTG 58 NA Rattus norvegicus 81 Erich1 ENSRNOG00000042114 ENSRNOT00000064468 3 1 1 94 16 80616338 80616356 AGACTCCAGCTTTGGACAC 60 80616411 80631365 GATCTTAATGTCACCAGCTGTC 59 NA Rattus norvegicus 81 Fam83c ENSRNOG00000046772 ENSRNOT00000073178 2 1 1 81 3 151367232 151367589 CAGTTACAGCTTCACTTGGC 60 151367170 151367189 AAAGTCTTCCACAATGTGGC 59 NA Rattus norvegicus 81 Defa24 ENSRNOG00000030524 ENSRNOT00000018529 1 1 1 88 16 75345276 75345912 AGATGCAGTCTTAAGAGATCTG 58 75345209 75345227 ATCTCTTGTTGCAGATCCC 57 NA Rattus norvegicus 81 Mybl2 ENSRNOG00000007805 ENSRNOT00000010343 1 1 1 80 3 159428234 159429633 GTCACTTTCCTAACCGCAC 59 159429677 159429695 ACGGTCCCTTAACAAGGTC 59 NA Rattus norvegicus 81 RGD1564899 ENSRNOG00000049942 ENSRNOT00000073370 3 1 1 60 16 8884108 8884129 TAGTTACAAATCCAAAGCACCC 59 8884069 8884087 GACACGTTTCCGAACATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcid2 ENSRNOG00000025222 ENSRNOT00000044085 1 1 1 80 16 81763124 81763143 CTCTCCAGAAGAGAAATGCC 58 81763183 81764061 GCGTAGGTACACCTTAAATGAG 59 NA Rattus norvegicus 81 LOC685135 ENSRNOG00000030778 ENSRNOT00000044934 3 1 1 66 16 48513577 48513595 CTGGTGTGATTAGCAAGGC 59 48513625 48513643 GGCACGTTCCCATTATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam198b ENSRNOG00000010183 ENSRNOT00000013524,ENSRNOT00000088686 1 2 2 80 2 178681570 178699066 ATTAGAGTTCATCCAAGATGGC 58 178699106 178699125 TGGCTAACATTGCTTGAAGG 59 NA Rattus norvegicus 81 Ppih ENSRNOG00000008489 ENSRNOT00000067943 3 1 2 82 5 138354326 138354344 GATTGGCTGGATGGAAAGC 59 138352974 138353583 GTGGGAACATTCTCAATCTTCC 59 NA Rattus norvegicus 81 Cbln3 ENSRNOG00000020503 ENSRNOT00000090228,ENSRNOT00000027794 3 2 2 104 15 34550060 34550389 ATCTACTTCGACCAGGTGC 59 34549974 34549992 CACATGGAATCGGAAGCTG 59 NA Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000052176,ENSRNOT00000078843 1 2 5 80 X 26442579 26443954 AGCTATGAGGTGCTTACCC 59 26444266 26444286 CATGGGTTCGTAACCATAGGA 60 NA Rattus norvegicus 81 Runx1 ENSRNOG00000001704 ENSRNOT00000002313,ENSRNOT00000084134 3 2 2 94 11 32777409 32807362 CAAAGTCAGATGCAGGATGC 60 32777334 32777352 ACAGAAGAGGTGATGGACC 59 NA Rattus norvegicus 81 Arhgef12 ENSRNOG00000008924 ENSRNOT00000081007 1 1 2 122 8 47260904 47261433 AGAGCTGTGAACATTGTAGG 58 47259966 47259984 AACTTTCCTCCACCTTCTG 57 NA Rattus norvegicus 81 Clu ENSRNOG00000016460 ENSRNOT00000078861,ENSRNOT00000022095 1 2 3 85 15 42656261 42657862 AGCTCCAAGAACTGTCCAC 60 42657910 42657929 GGTCTTTATGTGCTTCACCC 59 NA Rattus norvegicus 81 Si ENSRNOG00000031067 ENSRNOT00000046681 1 1 2 80 2 170238090 170238197 TTTGGGATACCATACATTGGAG 58 170238031 170238049 TTGCATCCAACGAGTACAG 58 NA Rattus norvegicus 81 Nfkbiz ENSRNOG00000031163 ENSRNOT00000041116 3 1 2 88 11 47263035 47263053 AGAACTCGGTGAAAGAGCT 59 47263103 47266325 AAAGGCACTCTTAAACTCGTC 59 NA Rattus norvegicus 81 Cfap46 ENSRNOG00000027374 ENSRNOT00000029027 3 1 2 84 1 211989026 211989044 AGTCCTAGTTGCCCTTGAG 59 211988386 211988978 TTTCACCACCTGACCTAGG 59 NA Rattus norvegicus 81 Tpm3 ENSRNOG00000017441 ENSRNOT00000023567 3 1 3 89 2 189440270 189450009 CTTGGAAGATAAGCTGAAGTGC 60 189450058 189450077 TACATCTCGTTCAGGTCCAG 59 NA Rattus norvegicus 81 Col5a1 ENSRNOG00000008749 ENSRNOT00000012334 2 1 2 80 3 6568400 6568420 AGTCTACTGCAATTTCACAGC 59 6568461 6570772 CAAGAAGTGATTCTGGCTCC 59 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000047817,ENSRNOT00000002220 3 2 7 108 11 46253393 46288169 CAAGAGTCAAACCTGCTCC 59 46248784 46248803 GTATGCAGGGATCCCTTAGG 60 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000049859 1 1 7 80 11 46281535 46283465 CACAGTCAACAAAGGCTCC 59 46281473 46281492 GTACTTCTGGACTACGGGTG 60 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000049859 3 1 7 80 11 46244235 46245638 AAGTGAAACTGTGCCTTTAGAG 59 46244176 46244197 TGTAGTTCCTCTTCACTAGGTC 59 NA Rattus norvegicus 81 Asph ENSRNOG00000007445 ENSRNOT00000079432 1 1 3 167 5 22764942 22765421 GAACACAGAGGCAAAGCAC 60 22761630 22764814 CCTAGCTTTCCTAGAACTTCCT 59 NA Rattus norvegicus 81 Sirt2 ENSRNOG00000020102 ENSRNOT00000084839 3 1 2 100 1 86971001 86971021 TGACTCCAAGAAGGCTTACAG 60 86971191 86971289 CTTCCAGCTCCTTCTTCCA 59 NA Rattus norvegicus 81 Il4r ENSRNOG00000015441 ENSRNOT00000020994 2 1 2 80 1 196960492 196961778 GTGGTACAACCACTTCCAG 58 196961821 196961840 AACAATAGGATGCAGATGCA 58 NA Rattus norvegicus 81 Gckr ENSRNOG00000048874 ENSRNOT00000073228 2 1 2 80 6 26376040 26376060 GATTCTACTGGAAACCCTGCT 60 26375542 26376000 TCCAGAAGGCATCTTTGAGAG 60 NA Rattus norvegicus 81 Edrf1 ENSRNOG00000017728 ENSRNOT00000089957 2 1 2 133 1 205712704 205712722 AAGATCCCAGTGCTTCCAG 59 205715295 205715563 TTTAAGACCCTGACTGTTCTCC 60 NA Rattus norvegicus 81 Kank1 ENSRNOG00000016023 ENSRNOT00000021496 3 1 2 81 1 243387009 243388119 TTAACGGCGGGTATGAGAC 60 243388163 243388182 TCACACTCGTCATCTGACTC 59 NA Rattus norvegicus 81 Stim1 ENSRNOG00000020425 ENSRNOT00000088370,ENSRNOT00000027685 2 2 2 80 1 167461706 167461725 AACATCCACAAGCTGATGGA 60 167461766 167489720 GAGGTCTTCCCTTAGGAACTC 59 NA Rattus norvegicus 81 Gimap5 ENSRNOG00000008416 ENSRNOT00000083891,ENSRNOT00000084927 3 2 3 70 4 78382326 78383799 AGTTGAAGGACAAGAAACCT 57 78383832 78383850 CAGATTTACCCACCAGGAG 57 NA DesignRelaxed Rattus norvegicus 81 Cep162 ENSRNOG00000010608 ENSRNOT00000014165,ENSRNOT00000083934 3 2 2 80 8 94900403 94904679 CAGAAACAGGTGTTTCTTATGG 58 94900344 94900363 GAGAATGAGCTACGTGATGG 58 NA Rattus norvegicus 81 Birc6 ENSRNOG00000027191 ENSRNOT00000083128,ENSRNOT00000006830 1 2 2 80 6 21988212 21989624 ACAGAAGGACAGAAGGAGTC 59 21988151 21988170 CCACGTAATCCAGTAACCTG 58 NA Rattus norvegicus 81 Birc6 ENSRNOG00000027191 ENSRNOT00000083128,ENSRNOT00000006830 2 2 2 80 6 21988515 21989623 CAGAAGGACAGAAGGAGTCC 60 21988454 21988473 GCCACGTAATCCAGTAACCT 60 NA Rattus norvegicus 81 Nptn ENSRNOG00000009029 ENSRNOT00000012295 1 1 2 84 8 63379309 63419557 TCAGAACGAACCAAGAATTGTC 59 63419602 63419620 AGTGAGGTTACACTGCAGG 59 NA Rattus norvegicus 81 Wdfy1 ENSRNOG00000015080 ENSRNOT00000088963,ENSRNOT00000063834 1 2 2 82 9 85488990 85491057 CCATGAAGGTAGTATCGCCT 59 85488927 85488945 TGATGATGCTGTTGTCGGA 59 NA Rattus norvegicus 81 Selt ENSRNOG00000013507 ENSRNOT00000018248 3 1 2 82 2 148765593 148774433 TTTCAGATTTGTGTATCCGGG 58 148774477 148774495 ATGCGGATGTCTGGATACC 59 NA Rattus norvegicus 81 Fam8a1 ENSRNOG00000026120 ENSRNOT00000060500,ENSRNOT00000036560 3 2 2 80 17 18418143 18420134 CAGTGGGATAAAGGACATCTC 58 18418083 18418102 AGGTCTTCCATTGATGTGTC 58 NA Rattus norvegicus 81 LOC361635 ENSRNOG00000016063 ENSRNOT00000050393 2 1 2 83 1 188503092 188503111 CCATTTCTGGACATGTTCCA 58 188503156 188510283 AGTGAGAGCGTTGATAAAGG 58 NA Rattus norvegicus 81 Myh14 ENSRNOG00000020014 ENSRNOT00000091760,ENSRNOT00000027132 2 2 2 80 1 100653094 100654313 CGAGACCTATCTGCTGGAG 59 100653032 100653052 AGCAGCTGGTAGAAGATATGG 60 NA Rattus norvegicus 81 Cdadc1 ENSRNOG00000012209 ENSRNOT00000089963,ENSRNOT00000068353 1 2 2 80 15 39883053 39886438 TAGTGAATGCTGGAGTTAACC 58 39882993 39883012 CAGAACTAGAAGCCTCAGTG 58 NA Rattus norvegicus 81 Esrp1 ENSRNOG00000008184 ENSRNOT00000067129 3 1 2 118 5 24589418 24589437 CTAATCTTAGCAGTGTCCCG 58 24578513 24589339 GTCTTTCAAACACTGGTAACC 58 NA Rattus norvegicus 81 Atxn7l4 ENSRNOG00000010415 ENSRNOT00000076183 1 1 4 81 6 52608437 52631087 GTCGTTCTAGAGAAGACACAG 58 52631130 52631148 TGATGTCCGGAGATTGGAG 59 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000037255 3 1 10 80 2 231316679 231316697 CCAAGTATGGAAGCCTGGA 59 231314513 231316637 TATAGCCATTCTTCCCTGCTG 60 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000076734,ENSRNOT00000087781,ENSRNOT00000078903,ENSRNOT00000027487 3 6 7 103 1 215610836 215610854 AACTCTGCAAACAACTGCA 59 215610921 215611167 GTTCATGTCTTCCAGCTCC 58 NA Rattus norvegicus 81 Efna4 ENSRNOG00000020588 ENSRNOT00000086916,ENSRNOT00000027935 2 2 2 118 2 188657365 188657383 CTTCGAGTTCTTGCCTGGA 60 188656576 188656936 CTGACTCGGATCTGTCCTC 59 NA Rattus norvegicus 81 Fsd2 ENSRNOG00000019278 ENSRNOT00000026089,ENSRNOT00000078916 3 2 2 80 1 143379383 143381539 AGGACCAAGCAGAGTTCAC 60 143379321 143379341 ACTCATACTGGGTATTTGGCT 59 NA Rattus norvegicus 81 Epb41l3 ENSRNOG00000016724 ENSRNOT00000022849,ENSRNOT00000088647 3 2 4 92 9 117651351 117659910 CTGAGGAGACTAAACAATCTTCTG 59 117659960 117659979 TGAACTCTGTGGGTTTCCTC 60 NA Rattus norvegicus 81 RGD1309870 ENSRNOG00000037621 ENSRNOT00000038733,ENSRNOT00000057067 2 2 2 84 14 91606972 91606990 TTCATTTCACAGCCACCCA 60 91607037 91613274 AGTAAGAGGCGGTTCATCTC 59 NA Rattus norvegicus 81 Micalcl ENSRNOG00000016210 ENSRNOT00000085326,ENSRNOT00000043017 3 2 2 80 1 177214071 177225636 AGAGGAGAAACAGATTCAGGG 59 177225675 177225696 TTTATTCTTCTCCAGAACCAGC 59 NA Rattus norvegicus 81 Micalcl ENSRNOG00000016210 ENSRNOT00000085326 1 1 2 88 1 177183923 177183941 ACTTCAGTAAGGATCGGCC 59 177183993 177187237 GTATCAGAGCTGCTGTCCT 59 NA Rattus norvegicus 81 Slc22a5 ENSRNOG00000008432 ENSRNOT00000086644 3 1 4 99 10 39220333 39220352 GTAAGGATGACTGGAAAGCC 58 39211328 39220272 CTCCAGTCTCTGTCTGAGAG 59 NA Rattus norvegicus 81 Zfp384 ENSRNOG00000017066 ENSRNOT00000081640,ENSRNOT00000023192,ENSRNOT00000055985,ENSRNOT00000023240,ENSRNOT00000036654 2 5 6 82 4 157547895 157550323 CTCTCCAACCTGCAGTCTC 60 157550369 157550387 TCTGTGTATGCTCGGTGAC 60 NA Rattus norvegicus 81 Extl3 ENSRNOG00000013581 ENSRNOT00000018583,ENSRNOT00000077197 1 2 2 80 15 48424775 48427702 TTCACAAGTATTACGCCTACC 58 48424715 48424737 CACAGTTGATATACTCATCCACC 59 NA Rattus norvegicus 81 Btla ENSRNOG00000030246 ENSRNOT00000083124 2 1 2 80 11 60532611 60536075 CCATGTGACAGAAAGGACTC 58 60528906 60528925 CTTCCTGCTAAGTCAGAAGG 58 NA Rattus norvegicus 81 Eif6 ENSRNOG00000049497 ENSRNOT00000078688 3 1 2 84 3 151359872 151359890 TGGAGAGTGTCTTCAAGCT 58 151359483 151359826 GTCAGTGATCTGTCAATGAGG 59 NA Rattus norvegicus 81 Slc17a4 ENSRNOG00000022505 ENSRNOT00000059494 2 1 2 84 17 43464378 43464509 CTCAAGAGGTACACTCGCT 59 43464557 43464575 TATGAAACCACAATGGCCC 58 NA Rattus norvegicus 81 Desi2 ENSRNOG00000004524 ENSRNOT00000005967 3 1 2 85 13 96112231 96141612 CGTCTACGACATGTACTGGA 59 96141655 96141678 CTCTGCCATATACTTCAATTCCAG 60 NA Rattus norvegicus 81 Adcy6 ENSRNOG00000054757 ENSRNOT00000088323,ENSRNOT00000082699 1 2 2 81 7 140281260 140281374 AATGTCAGCATCCTGTTTGC 60 140281198 140281216 AGGTCATGACCAGTTCCTG 59 NA Rattus norvegicus 81 Ppp3cc ENSRNOG00000009745 ENSRNOT00000082505,ENSRNOT00000012993,ENSRNOT00000084166 1 3 4 80 15 51925735 51925753 GGTAGTGAGAAGACCCTGG 59 51920812 51925691 ACAAACTGCAGGGTAACTG 58 NA Rattus norvegicus 81 Mfge8 ENSRNOG00000017510 ENSRNOT00000079100,ENSRNOT00000067889 2 2 3 168 1 140855509 140857385 GTGAACTCGAGACCACCTC 60 140855359 140855377 AGGTGGTTGGAAAGATCGG 60 NA Rattus norvegicus 81 Plekha5 ENSRNOG00000008747 ENSRNOT00000011770 2 1 2 81 4 174755802 174755822 AAAGAGGCTCTTCAGAAACAG 58 174757877 174760302 CTATAATCTGGACCCTCGCT 59 NA Rattus norvegicus 81 Dlg4 ENSRNOG00000018526 ENSRNOT00000089108 1 1 2 80 10 56640027 56640047 AGATCAAACTCATCAAAGGGC 59 56640194 56640214 TGTTATCTCCAGGGATGCT 58 NA Rattus norvegicus 81 Wnk2 ENSRNOG00000016684 ENSRNOT00000084304 3 1 2 84 17 16015793 16015811 AAGAGCAAATTGAAGGCGG 59 16015858 16016876 CAGACAAATGACCTGTGCTG 60 NA Rattus norvegicus 81 LOC316124 ENSRNOG00000047549 ENSRNOT00000074894 1 1 2 81 9 10164921 10164940 TGTGCTTTGGTATACAACCA 58 10164662 10164880 CCCAAACATCCAAGATATTGTC 58 NA Rattus norvegicus 81 Nvl ENSRNOG00000003629 ENSRNOT00000004927,ENSRNOT00000086888 2 2 2 80 13 99428760 99428778 AGCTGCTGACAGAAATGGA 59 99418833 99428722 CAATGATATCTGGTCTATTAGTGGC 59 NA Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000079722 1 1 6 80 1 282643685 282643704 AACATCTATACACCAGCCCA 59 282672490 282681785 TATAACCAGTGCACCACCA 59 NA Rattus norvegicus 81 AC127605.1 ENSRNOG00000033156 ENSRNOT00000043970 1 1 2 69 X 53234810 53234828 GTACCTTGAGGAGCAGGAC 60 53234621 53234639 TTCTCTGAAAGCCAGCCTC 60 NA DesignNoJunction Rattus norvegicus 81 Zfp330 ENSRNOG00000003461 ENSRNOT00000080337,ENSRNOT00000004614 2 2 2 80 19 23937398 23937796 GATCTTAGCATGTCAACACG 57 23937337 23937355 ATCATACCCAGAAGCTCCA 58 NA Rattus norvegicus 81 Zfp330 ENSRNOG00000003461 ENSRNOT00000004614 2 1 2 81 19 23945416 23945435 TCAAGAAGTACCGTTGACCT 59 23944322 23944807 TATTCTTCTGCCGCCTCTG 60 NA Rattus norvegicus 81 Zfp330 ENSRNOG00000003461 ENSRNOT00000004614 3 1 2 81 19 23945413 23945433 AAGAAGTACCGTTGACCTAGC 60 23944320 23944805 TCTATTCTTCTGCCGCCTC 59 NA Rattus norvegicus 81 Camk2d ENSRNOG00000011589 ENSRNOT00000016026,ENSRNOT00000068198 3 2 3 164 2 231063299 231074199 GATAAACAACAAAGCCAACGTG 59 231078942 231114673 TCTTGCTTTCGTGCTTTCAC 60 NA Rattus norvegicus 81 Sept8 ENSRNOG00000007462 ENSRNOT00000083162 1 1 3 92 10 38894546 38905203 AGGACAAGAAGAACAGATCAG 58 38905256 38905275 GTTCCACATTTGCTTTGGTC 58 NA Rattus norvegicus 81 Abcb1a ENSRNOG00000008012 ENSRNOT00000082359 2 1 5 108 4 22375497 22375515 GATGACGACGTACCTCCAG 60 22375406 22375428 TGCAAGCCTCATTTATTATGGC 60 NA Rattus norvegicus 81 Myo9b ENSRNOG00000016256 ENSRNOT00000087576,ENSRNOT00000086105 2 2 5 85 16 19728868 19728886 GAGGAGCTGGATGTTAACG 58 19729170 19730710 TGGTTATGCAAATCGCTCC 59 NA Rattus norvegicus 81 Cyp11b2 ENSRNOG00000030111 ENSRNOT00000091401 1 1 3 80 7 116158778 116198846 GTATCAAGAAATGTGTATCGCG 58 116158719 116158737 ACTCTGTGCTACCATCTCG 59 NA Rattus norvegicus 81 Kif3b ENSRNOG00000010361 ENSRNOT00000013804,ENSRNOT00000085757 3 2 2 80 3 148797644 148800671 AAATCAAGGCCATGGAGAG 58 148800715 148800733 CCAAGATCTTCTGCTGCTC 58 NA Rattus norvegicus 81 Ccdc89 ENSRNOG00000022766 ENSRNOT00000024095 2 1 1 60 1 154606757 154606775 CTAGAACTGCTCAACTCGG 58 154606798 154606817 CCTTCATCTTCTCCATCTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptrh2 ENSRNOG00000004288 ENSRNOT00000005661 1 1 1 128 10 74002174 74009361 AAGCTTCAGATGCTTTCCA 57 74009453 74009471 GAAGATTCCAAGGTGGCTC 58 NA InUTR Rattus norvegicus 81 Mettl8 ENSRNOG00000009382 ENSRNOT00000058524 3 1 4 86 3 57572037 57572058 GACTTGGAAGAATACAGCAGAG 59 57570344 57571992 ACAGCCAACCTCTAGTATTCG 60 NA Rattus norvegicus 81 Sncaip ENSRNOG00000018254 ENSRNOT00000082760,ENSRNOT00000025119 1 2 2 80 18 47842789 47850109 GGCCATCAAGAATGGTCAG 59 47850153 47850171 TTGGAACAACTCAGTTCCG 58 NA Rattus norvegicus 81 Zbtb10 ENSRNOG00000061862 ENSRNOT00000087598,ENSRNOT00000081553 1 2 2 80 2 94720854 94720872 ATGTGTCACTGTCGATGGA 59 94709547 94720812 ATTTCTGACTCATTTCCCACC 58 NA Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000077623,ENSRNOT00000021278 1 2 6 80 1 262013548 262013567 CGGATGAGGAATTTGAGGAG 58 262012002 262013505 TCAGACAAGCCACAATCTC 58 NA Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000077623 3 1 6 80 1 262013610 262013928 TTTGCCAAGATGAGGTGTG 58 262013548 262013567 CTCCTCAAATTCCTCATCCG 58 NA Rattus norvegicus 81 Rad23a ENSRNOG00000003026 ENSRNOT00000004042,ENSRNOT00000084123 3 2 2 84 19 25953642 25955249 CTGATGAGACGGTGAAGGT 59 25953576 25953594 ATGAGTTTCTGTCCAGCCA 59 NA Rattus norvegicus 81 Zkscan3 ENSRNOG00000055000 ENSRNOT00000081063 2 1 2 83 17 45255678 45255697 AAAGTAGCCAGATGGAGTCC 59 45255741 45256028 CCTGGGTGACTCTAACTTCTG 60 NA Rattus norvegicus 81 LOC100365902 ENSRNOG00000025383 ENSRNOT00000088802 2 1 2 118 X 37336867 37337312 GTATCGTTGGACCTCACGT 60 37337393 37338283 TATCTGACCCTGGTTAGCAG 59 NA Rattus norvegicus 81 Gsto2 ENSRNOG00000012801 ENSRNOT00000087894 1 1 4 80 1 267607688 267607707 CTACAGCATGAGGTTCTGTC 58 267607750 267627772 TTGATGATTTCATGCCGGA 58 NA Rattus norvegicus 81 Ly6i ENSRNOG00000007137 ENSRNOT00000076694,ENSRNOT00000009395 3 2 2 81 7 116421169 116422136 GTGTGCAGAAAGAGCTCAG 59 116421106 116421124 GGTAGCAGTTGATGAGCAG 58 NA Rattus norvegicus 81 Nae1 ENSRNOG00000033133 ENSRNOT00000076948,ENSRNOT00000048221 1 2 2 80 19 674656 674676 TAGTCCTGTACCTAATGTTGC 57 674714 678094 CTTGATAGTTAGATACTCCTGGG 58 NA Rattus norvegicus 81 Nae1 ENSRNOG00000033133 ENSRNOT00000076948,ENSRNOT00000048221 2 2 2 80 19 674658 674677 GTCCTGTACCTAATGTTGCG 59 674714 678096 AACTTGATAGTTAGATACTCCTGGG 60 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 2 10 10 74 18 30188421 30188439 AGTATCCAGTGCAACACCA 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 3 10 10 75 18 30188420 30188438 CAGTATCCAGTGCAACACC 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Dixdc1 ENSRNOG00000010260 ENSRNOT00000083102 2 1 2 81 8 55110323 55110341 GTGGATCTAGAACGGGAGC 60 55109474 55110281 AATTTGTCACCTCATCTGTGTC 59 NA Rattus norvegicus 81 Hr ENSRNOG00000011427 ENSRNOT00000082639,ENSRNOT00000015716 2 2 2 80 15 52257010 52259310 CTTTCTCCAGATGGTGTGC 59 52259353 52259372 AACCCTGAATCCAAGTAGCA 59 NA Rattus norvegicus 81 Gk ENSRNOG00000034116 ENSRNOT00000064340,ENSRNOT00000051249,ENSRNOT00000087919 1 3 4 84 X 54259441 54262384 ATGGCCTAATGAAAGCTGG 58 54258975 54258993 ATTTGTCCCACCAAAGCAG 59 NA Rattus norvegicus 81 Gk ENSRNOG00000034116 ENSRNOT00000064340,ENSRNOT00000051249 3 2 4 83 X 54235604 54235623 AAATCCGTTACTCCACCTGG 60 54229835 54235560 ATGGGATACCACTTTCAGGAG 59 NA Rattus norvegicus 81 Mta1 ENSRNOG00000004711 ENSRNOT00000006521 2 1 2 80 6 137946272 137946290 CCTGTCATCAACAATGGCT 58 137946333 137946555 CTTCATGTTGCCATCTACCC 59 NA Rattus norvegicus 81 Slc12a7 ENSRNOG00000016372 ENSRNOT00000022635,ENSRNOT00000081339,ENSRNOT00000078039 3 3 3 81 1 32113642 32114892 GCACCTGTACAATGCTGAC 59 32112924 32112942 ATGTAGTATGAGCCTCCCG 58 NA Rattus norvegicus 81 Olr671 ENSRNOG00000053731 ENSRNOT00000091085 2 1 2 114 3 77709984 77791837 TTCTTCTTGGCATTCCTGTC 58 77709889 77709907 TCATACACCAGCCAAAGGA 59 NA Rattus norvegicus 81 Cpd ENSRNOG00000003873 ENSRNOT00000005262 2 1 2 95 10 63326545 63332247 GCAGGAACAAGTTTGTGCT 59 63332305 63332324 TTCCAGTGGTCTTATGCTCG 60 NA Rattus norvegicus 81 Cyp2j10 ENSRNOG00000042224 ENSRNOT00000079786 2 1 4 81 5 115167945 115167963 GCTCTTAGCTGGCTACCTC 60 115167880 115167901 GAACAAGTTCCCAAATGGCA 59 NA Rattus norvegicus 81 Tpm4 ENSRNOG00000015496 ENSRNOT00000021073 3 1 2 81 16 19389609 19389705 TGACAAACTGAAAGAGGCTG 59 19389547 19389567 CAGGTCATCGATTGTCTTCTC 59 NA Rattus norvegicus 81 Rnf44 ENSRNOG00000017641 ENSRNOT00000089885,ENSRNOT00000060822 2 2 2 80 17 10469490 10469588 GAGAACTATGAGGCTCTCCTG 60 10469628 10469648 CTCTATGTCTGCTTTGGTGAG 59 NA Rattus norvegicus 81 Ruvbl1 ENSRNOG00000013195 ENSRNOT00000090875,ENSRNOT00000018339 3 2 2 148 4 120412028 120412046 TTGAGGAGGTGAAGAGCAC 59 120412157 120415007 TATGACACCACATGCCTCTC 60 NA Rattus norvegicus 81 Eml4 ENSRNOG00000030294 ENSRNOT00000042307 3 1 2 89 6 6637352 6637372 TTCATTCCTTCGGATGTTGAC 59 6637418 6638645 CTTTCCTCGATAACCATATTCCAG 59 NA Rattus norvegicus 81 Chst1 ENSRNOG00000007989 ENSRNOT00000010510 2 1 1 162 3 81509454 81509472 TTCTCTACCTGAAGGCCTG 58 81510787 81510805 GTACTGGATGGCAATGGAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Meis2 ENSRNOG00000004730 ENSRNOT00000077091,ENSRNOT00000051638 1 2 2 97 3 107754150 107754170 TGACCTCGTGATTGATGAGAG 60 107745382 107754091 AGGATGAAGGGTTGTGGTC 59 NA Rattus norvegicus 81 Rab13 ENSRNOG00000016733 ENSRNOT00000092112 3 1 2 108 2 189581753 189581771 TTCAAGTTGCTGCTGATCG 59 189581842 189583006 AATCAATTCCGATGGTGGAG 58 NA Rattus norvegicus 81 Fchsd2 ENSRNOG00000019319 ENSRNOT00000091822 2 1 2 80 1 166344238 166351177 GAATGACGATAGCTGAGAGTC 58 166351217 166351237 TTCGAGCCTCCTTATTTAGAC 57 NA Rattus norvegicus 81 Fchsd2 ENSRNOG00000019319 ENSRNOT00000091822 3 1 2 81 1 166344238 166351177 GAATGACGATAGCTGAGAGTC 58 166351217 166351238 TTTCGAGCCTCCTTATTTAGAC 58 NA Rattus norvegicus 81 Zfp709 ENSRNOG00000016186 ENSRNOT00000021742,ENSRNOT00000087597 1 2 2 66 16 19637556 19637576 CCAGAACATAGATGATGACCA 57 19636633 19636651 CAGTCTTTCCACAACTCCA 57 NA DesignNoJunction Rattus norvegicus 81 Sde2 ENSRNOG00000003247 ENSRNOT00000004350 3 1 2 152 13 99142407 99143763 AATCATGAGAAAGCGATGGC 59 99143878 99143896 CATTTCATGGCACTGCCTC 60 NA Rattus norvegicus 81 Sde2 ENSRNOG00000003247 ENSRNOT00000078263 3 1 2 81 13 99142351 99142369 AGACAACCAATCGAGAAGC 58 99142413 99142986 TGACCAGGAATTGCTTTCTC 58 NA Rattus norvegicus 81 Haus8 ENSRNOG00000052038 ENSRNOT00000090775,ENSRNOT00000078714 2 2 2 84 16 19663400 19667056 AAGTACAAGGAGGAAGAGTGG 59 19661145 19661163 TCTCCTTTGGCTGCTACAG 59 NA Rattus norvegicus 81 Peli3 ENSRNOG00000019950 ENSRNOT00000079984,ENSRNOT00000027038 2 2 2 106 1 220199678 220202709 GTTCTGGGCTACAATGGGT 60 220199590 220199609 ATGACATCTGGCTTCACTCC 60 NA Rattus norvegicus 81 Cxcr4 ENSRNOG00000003866 ENSRNOT00000005143,ENSRNOT00000091514 2 2 2 129 13 45316565 45318783 CCATGGAAATATACACTTCGGA 58 45316457 45316475 AAATAGATGGTGGGCAGGA 58 NA InUTR Rattus norvegicus 81 Wdfy2 ENSRNOG00000010042 ENSRNOT00000080537 3 1 2 81 15 46008926 46008944 CAGGAGGTGGTCAATATGG 57 46008989 46059109 AAACACGAACTGTCCTGTC 58 NA Rattus norvegicus 81 Ptbp3 ENSRNOG00000016334 ENSRNOT00000022107,ENSRNOT00000089251 3 2 2 80 5 76678301 76678319 CTGGCTCAAAGAACTTCCA 58 76675409 76678258 CCATTGTAACAGAAGGAGGA 57 NA Rattus norvegicus 81 Hecw1 ENSRNOG00000016046 ENSRNOT00000021703 1 1 2 80 17 53563933 53563953 CTGCAAATGACACTTACACAG 58 53563994 53747698 CGCTGAATCTAAACCATTCG 57 NA Rattus norvegicus 81 Arhgap12 ENSRNOG00000017791 ENSRNOT00000024022,ENSRNOT00000084919 3 2 2 80 17 54375304 54380670 AGTACAAGCTGGTTTGGGA 59 54380714 54380732 TGATGCCATTTCAATCGCT 58 NA Rattus norvegicus 81 Pla2g12a ENSRNOG00000057470 ENSRNOT00000087287 3 1 2 96 2 235321269 235322661 TTGGTGTTCATCTGAACATTGG 60 235322718 235322736 CAGTCGTTCTTGCCTTTCC 59 NA Rattus norvegicus 81 Phyhipl ENSRNOG00000000274 ENSRNOT00000000299 3 1 2 105 20 19318344 19346719 ACCGTGATGGTAACAAATCAC 59 19346784 19346804 ATCTTGAAGGAGTCACATGTG 58 NA Rattus norvegicus 81 LOC688963 ENSRNOG00000002721 ENSRNOT00000003674 2 1 1 60 11 65960427 65960446 ATCTGCTTCAGTACAACGAC 58 65965161 65965179 CGAATCAAGGCAGGATCCT 60 NA DesignNoJunction Rattus norvegicus 81 Dmtn ENSRNOG00000012273 ENSRNOT00000067776 2 1 2 90 15 52295061 52295079 CTTCCTATGGCAGGACCAC 60 52294171 52294852 CATAGGGATAGATCTGGGCTC 59 NA Rattus norvegicus 81 Pklr ENSRNOG00000020420 ENSRNOT00000027700,ENSRNOT00000065791 3 2 2 81 2 188452441 188452461 TCAAGGAGATGATCAAAGCAG 58 188452503 188452663 ATGGATTCTGCATGGTACTC 58 NA Rattus norvegicus 81 Pik3r4 ENSRNOG00000013669 ENSRNOT00000090707,ENSRNOT00000018654 2 2 2 80 8 114333009 114333027 AACGTGCTCAAATGATGGT 58 114333069 114337505 AGAATAGACCTCGTCGTAGTG 59 NA Rattus norvegicus 81 Svil ENSRNOG00000018110 ENSRNOT00000025037 2 1 2 87 17 55290236 55292266 GCCTTCCAGAGTTAAAGTTAGAG 59 55290171 55290190 CTGAGTTAGGGACTCTGAGG 59 NA Rattus norvegicus 81 Folr1 ENSRNOG00000019902 ENSRNOT00000079675,ENSRNOT00000026962 1 2 2 81 1 166935456 166939255 AAGTTACACGACCAGTGCA 60 166935393 166935414 AAATGTCCTTATGTGCTTCCTG 59 NA Rattus norvegicus 81 Astn1 ENSRNOG00000005667 ENSRNOT00000075976,ENSRNOT00000076644,ENSRNOT00000007660 1 3 4 87 13 76336016 76342907 GACCCAGAGGCTCTTACAG 59 76342958 76342976 ATCACATCGACACCAGTCC 60 NA Rattus norvegicus 81 Fam49b ENSRNOG00000061246 ENSRNOT00000090784,ENSRNOT00000078116 3 2 2 115 7 104525176 104527566 AATTAATAACGTCCCGGCAG 59 104525080 104525098 TTGTTGCGTCACTTAAGGT 58 NA Rattus norvegicus 81 Vom2r3 ENSRNOG00000046319 ENSRNOT00000044187,ENSRNOT00000072186 3 2 2 80 1 402125 407511 GGAGAAACATTGGTTCCCTC 59 407553 407572 GGCTGTTTGTTTCTGATGAC 58 NA Rattus norvegicus 81 Rnf8 ENSRNOG00000047171 ENSRNOT00000081715 2 1 2 81 20 8304487 8304505 GTAAGATGGTGGAACGCCT 60 8304548 8304732 AATTCCCTTCTTCCTCTTCGT 59 NA Rattus norvegicus 81 Pcdh19 ENSRNOG00000003929 ENSRNOT00000064458 1 1 2 80 X 104491615 104491634 TCACTATGATCTTCGTGGCA 59 104487781 104491572 AGTACTCAGCGATTCTGCA 59 NA Rattus norvegicus 81 Pcdh19 ENSRNOG00000003929 ENSRNOT00000064458 3 1 2 81 X 104491615 104491633 CACTATGATCTTCGTGGCA 57 104487779 104491570 GGAGTACTCAGCGATTCTG 58 NA Rattus norvegicus 81 Nfia ENSRNOG00000006966 ENSRNOT00000087089,ENSRNOT00000086628,ENSRNOT00000004017 1 3 4 80 5 116702980 116703001 GAAGGAGTTTGTCCAACTTGTC 60 116703041 116705149 CTGCTTCCATTGGGATTGAG 59 NA Rattus norvegicus 81 Impad1 ENSRNOG00000027079 ENSRNOT00000034495 2 1 2 80 5 17650896 17663137 AACGTGCAGATAAATACTGAGG 59 17650837 17650856 GTCCTCAGGAATCTTACGGT 59 NA Rattus norvegicus 81 Tia1 ENSRNOG00000016813 ENSRNOT00000085787 1 1 2 80 4 118223860 118224047 AAAGATACAAGCAGTAGTACCG 58 118224630 118224651 CAGTTTATGAGAATCCATGTGC 58 NA Rattus norvegicus 81 Tia1 ENSRNOG00000016813 ENSRNOT00000023103 3 1 2 80 4 118230303 118230437 GACTGACAGAACAACTAATGC 57 118230477 118230497 ACCCTTTATCTGGAAAGACTC 57 NA Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000083622,ENSRNOT00000081695,ENSRNOT00000091967,ENSRNOT00000085221 2 4 7 81 20 2517189 2517356 ATCAGGCGGATTTCAAACC 59 2517400 2517419 TTTAAAGCCTGAGTCTGCAC 59 NA Rattus norvegicus 81 Ccdc171 ENSRNOG00000033445 ENSRNOT00000075971 2 1 5 80 5 101697776 101697794 AAAGAGGTTGAGAGTGCGT 59 101697836 101738243 GGTGCTTCTTAGCAAGTTCAG 60 NA Rattus norvegicus 81 Tle1 ENSRNOG00000005882 ENSRNOT00000089560 2 1 2 133 5 88601663 88612315 ATCTTGCTACCGAAATCGC 58 88600079 88600097 ATTCAACTCTGCCATGGTC 58 NA Rattus norvegicus 81 Scyl2 ENSRNOG00000024955 ENSRNOT00000002638,ENSRNOT00000082016 2 2 2 80 7 30293413 30294239 TCAAACAGACTAAGGACTTGAC 58 30293354 30293372 TCTTAGGAGTGCTAACGGA 57 NA Rattus norvegicus 81 Ube4a ENSRNOG00000026833 ENSRNOT00000085022 2 1 2 102 8 49258271 49264831 ACAGCAGTCTGGTAGTGTG 59 49258187 49258207 ATTATCTGAGTCATCTGGGCT 59 NA Rattus norvegicus 81 AABR07067812.1 ENSRNOG00000021002 ENSRNOT00000028506 3 1 1 64 9 65789123 65789141 CTTCACTGGACTGCAAGGA 60 65784799 65784817 GGTGCGTGTAAATCATCGA 58 NA DesignNoJunction Rattus norvegicus 81 Dtymk ENSRNOG00000018904 ENSRNOT00000025644,ENSRNOT00000085029 3 2 2 92 9 100923719 100923738 CTATGAGACTGGGACGTTCC 60 100922032 100923664 GAAGCATCAACCACCTTCC 59 NA Rattus norvegicus 81 Snrnp70 ENSRNOG00000020763 ENSRNOT00000028176,ENSRNOT00000049957 3 2 2 94 1 101379422 101379564 GGCTAGAGTGAACTATGACAC 58 101375213 101375233 GTTTACTGTAGACCATGTGGA 58 NA Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000068545,ENSRNOT00000092187 1 2 7 80 17 57067671 57079369 TTGTTCAAGATGAGGAGACTG 58 57082587 57082605 CTCGGATCTGGTAAGTTGG 57 NA Rattus norvegicus 81 Maged1 ENSRNOG00000006756 ENSRNOT00000084632 3 1 5 118 X 63803924 63803942 GATGAAGCCTTGGATGCTC 59 63803818 63803842 AACTCAATGTCATCCCAAGG 58 NA Rattus norvegicus 81 Krt86 ENSRNOG00000008367 ENSRNOT00000082542,ENSRNOT00000081386 3 2 4 82 7 143124231 143124984 GCTCTGAAGAAGGATGTGG 58 143125030 143125048 TCGATCTCTTGGGTCAGTG 59 NA Rattus norvegicus 81 Zcchc24 ENSRNOG00000040205 ENSRNOT00000061883 1 1 1 66 16 2048045 2048063 TTAACAGCGTCTTCCAGCT 59 2036440 2036459 GGTGAAGCGTTCCTATACAC 59 NA DesignNoJunction Rattus norvegicus 81 Wdr62 ENSRNOG00000020807 ENSRNOT00000082555 2 1 2 83 1 88698768 88699774 CTAAGTGAGTCAGGGAGCC 59 88698703 88698721 TCTTGTCTCAGTGCCTTCC 59 NA Rattus norvegicus 81 Fyttd1 ENSRNOG00000034233 ENSRNOT00000080568,ENSRNOT00000042240 1 2 3 92 11 71128128 71128146 TCGTCCACCTCTAAGTGAC 59 71117930 71120909 TTCTGAGTTTGACGTGTTCTC 59 NA Rattus norvegicus 81 Fyttd1 ENSRNOG00000034233 ENSRNOT00000080568,ENSRNOT00000042240 2 2 3 93 11 71120949 71128132 GTGACAAGGTTCAGACCCA 60 71117915 71117936 CGAGTTAATCGTGGTTTCTGAG 60 NA Rattus norvegicus 81 Igsf10 ENSRNOG00000013917 ENSRNOT00000086186,ENSRNOT00000018628 3 2 2 80 2 149547638 149547657 TCTTTCTTCCTTGTGAGGCT 59 149545978 149547599 GGGATATTTCAAGTCCTGATGAG 59 NA Rattus norvegicus 81 Tmbim6 ENSRNOG00000055579 ENSRNOT00000091050 3 1 3 84 7 141067353 141067371 TGCATTGACCTCTTCTTGG 58 141067419 141069669 GGTCAATGGGCTTCTTCTC 58 NA Rattus norvegicus 81 Htr4 ENSRNOG00000019134 ENSRNOT00000025892 3 1 3 80 18 57654318 57727192 ACTTGATGCTAATGTGAGTTCC 59 57727231 57727251 ATAACCATTGCGAAGAACGTG 60 NA Rattus norvegicus 81 E2f1 ENSRNOG00000016708 ENSRNOT00000022115,ENSRNOT00000086933 3 2 3 80 3 150050879 150050898 ATCAGCTACAAGCCCTACAG 59 150050552 150050836 TTTCTTCATCCAACCGCTG 59 NA Rattus norvegicus 81 Cdk1 ENSRNOG00000000632 ENSRNOT00000000783,ENSRNOT00000086806,ENSRNOT00000081113 2 3 3 80 20 20583971 20583992 CCATGGATCTCAAGAAGTACCT 59 20584029 20586518 GGTACAAGTAACTCTTAACGAGC 59 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000076913 3 1 6 95 15 36976284 36978356 GAGTACATGCCATTATGTTCAGAG 60 36972820 36976230 GCTGGGCTAAATGCATCTC 59 NA Rattus norvegicus 81 Magi1 ENSRNOG00000022060 ENSRNOT00000083271,ENSRNOT00000037848,ENSRNOT00000071315 2 3 3 86 4 125704030 125704048 ACTGCTGACTAATGCGGAG 60 125694034 125703980 GTGGTGGTCCTTGTTTCCT 60 NA Rattus norvegicus 81 Aldh18a1 ENSRNOG00000015267 ENSRNOT00000091297,ENSRNOT00000020940 2 2 2 80 1 259065527 259065545 GCATTCTTCACCTCCTGAC 58 259063837 259065484 CTTCTCTGGTGTTTACCAGC 59 NA Rattus norvegicus 81 Dock7 ENSRNOG00000008298 ENSRNOT00000081971 2 1 3 80 5 117746932 117746953 TCCAGATGACATTGAAGTTGTG 59 117746628 117746893 TCCATTTCACTTTCTTCAGGC 59 NA Rattus norvegicus 81 Fam13c ENSRNOG00000000275 ENSRNOT00000051491 3 1 2 80 20 19364564 19366030 TTATCCCAACGATTCAGGAG 57 19364503 19364521 CTGGGTCTGGTAAAGAAGG 57 NA Rattus norvegicus 81 Fam71e2 ENSRNOG00000033173 ENSRNOT00000065051 1 1 2 80 1 72656428 72656447 GTTGTTTACCTGTCGTGGAC 59 72656488 72657601 GTCATCTGTCCATGAGATGGT 60 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245 3 2 6 86 14 44526913 44527306 TTCAAATTCAGCGGCTCTG 59 44527353 44527374 TCAGAAACATAGATGCCATCCA 60 NA Rattus norvegicus 81 Tm9sf4 ENSRNOG00000009406 ENSRNOT00000067261,ENSRNOT00000081370 1 2 2 80 3 148672476 148672497 ATCCTCAGCATGATTATCATCC 58 148672535 148674752 CATAGTGTCTTCAATGTCATCC 57 NA Rattus norvegicus 81 Synj2 ENSRNOG00000017114 ENSRNOT00000068476 1 1 3 80 1 46929504 46930366 GAGGAGAACAGGAAAGATCG 58 46930408 46930427 ACAAACTCATGTCTTTGCAG 57 NA Rattus norvegicus 81 Fam134b ENSRNOG00000010589 ENSRNOT00000063951,ENSRNOT00000089805 2 2 4 89 2 78249580 78251288 CTACCTACTGTTACTGTTTGCT 58 78251337 78251356 AGAATGGACTTGACTTTGCT 58 NA Rattus norvegicus 81 Cdc42bpa ENSRNOG00000002841 ENSRNOT00000003837 2 1 2 80 13 98274776 98274796 AGCAAATGCGCTTACATAGAG 59 98274837 98311838 TAACTACAGCAACCTCACCA 59 NA Rattus norvegicus 81 Galr2 ENSRNOG00000061733 ENSRNOT00000012523,ENSRNOT00000075548 3 2 2 89 10 105235580 105235598 TGCAAGGCTGTTCATTTCC 59 105235651 105236676 GATGGCCAGATACCTGTCC 60 NA Rattus norvegicus 81 Tmem231 ENSRNOG00000021517 ENSRNOT00000088297 2 1 2 81 19 44139466 44139805 GGAAGTCATTTCTTATCAGCCA 59 44139406 44139424 GAAGATGAGCAGGATGCTG 58 NA Rattus norvegicus 81 Tbce ENSRNOG00000029667 ENSRNOT00000040743,ENSRNOT00000079433 1 2 2 80 17 54022254 54022273 CCAAAGGAGACAAAGCAGAG 59 54022315 54023733 CTGGAAGAATCTGACACCTG 58 NA Rattus norvegicus 81 Mrfap1 ENSRNOG00000055319 ENSRNOT00000089759 3 1 1 60 14 78973861 78973880 TAGAGAAGAGCGAGTCTTCG 59 78974151 78974170 ACTCAACCAGAATCCATTGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Insr ENSRNOG00000029986 ENSRNOT00000041155,ENSRNOT00000067448 2 2 2 80 12 1693578 1695548 TCTATTCTTGAGGAAGAGGCAG 59 1693519 1693537 CTGGCACTGAGGTACTCTG 60 NA Rattus norvegicus 81 Krt84 ENSRNOG00000008819 ENSRNOT00000083466 2 1 2 80 7 143182494 143182512 TGTCACCTACAGGAAGCTG 59 143180874 143182031 CTGCTCACAGATATGTTTACTGG 59 NA Rattus norvegicus 81 Ankdd1a ENSRNOG00000015554 ENSRNOT00000073571,ENSRNOT00000033512 2 2 3 81 8 71048928 71050412 GTGGACTCGTTTGGAATGAC 59 71048866 71048884 CAGCATTGACCAGGATCTG 58 NA Rattus norvegicus 81 Hnrnpdl ENSRNOG00000002270 ENSRNOT00000079767,ENSRNOT00000003106 1 2 2 80 14 11201127 11201145 ATACACAGACGAAGAGCCA 58 11201186 11201312 ACTTTGATTTCACACTTCCCAG 59 NA Rattus norvegicus 81 Stk38l ENSRNOG00000001828 ENSRNOT00000002502,ENSRNOT00000086813 1 2 2 80 4 181084177 181084195 AATTGGGAATGGTGGTGTG 58 181084239 181086349 GGTCTTTCCCTTATGTGCC 58 NA Rattus norvegicus 81 RGD1306186 ENSRNOG00000037039 ENSRNOT00000091144 1 1 2 80 5 99177125 99177144 TAACCTGGACACTTTGAAGG 58 99177189 99177728 CTGAGTTTGCACCTACTGG 58 NA Rattus norvegicus 81 Ppp1r14d ENSRNOG00000012648 ENSRNOT00000017070,ENSRNOT00000085628 2 2 2 91 3 111023759 111036880 CAGGAACTCTTCCAGGGTC 59 111023686 111023704 TGAGTCCTTTGCTCGTCTG 60 NA Rattus norvegicus 81 Lmo2 ENSRNOG00000009401 ENSRNOT00000090365,ENSRNOT00000083527,ENSRNOT00000012625 2 3 3 81 3 93926471 93926489 GCAGGCGAGACTATCTCAG 60 93930958 93930976 GTCATCTCATAGGCACGGA 59 NA DesignNoJunction Rattus norvegicus 81 Bnc2 ENSRNOG00000006553 ENSRNOT00000067389 1 1 2 80 5 102432562 102432580 GAAATGCATGTCTGCACAG 58 102417196 102432518 TATGTTGGCACTGTGTCTG 58 NA Rattus norvegicus 81 Rapgef2 ENSRNOG00000021581 ENSRNOT00000091135 3 1 3 80 2 177950395 177950415 ACAATTATCGACACAGTGGAC 59 177947851 177950355 AGATTTAGTGCATTCCGTGTG 59 NA Rattus norvegicus 81 Piezo2 ENSRNOG00000038784 ENSRNOT00000065693 1 1 2 80 18 58400208 58400228 TGAAGAGGAGGAAGAAGAGGA 60 58395164 58400166 GCTTGGTAGACGAACTGGA 59 NA Rattus norvegicus 81 Abtb2 ENSRNOG00000008510 ENSRNOT00000085760,ENSRNOT00000029922 3 2 2 81 3 93642685 93642706 CAATAAGTCAGAGCAAGATGGG 59 93642745 93645856 CATCAGCATCTGAAAGATGTGG 60 NA Rattus norvegicus 81 Fbxl18 ENSRNOG00000001117 ENSRNOT00000001479 1 1 1 60 12 13734616 13734635 TACTGCAGAAGGACTACCAG 59 13736180 13736198 CCAATCTCCTTCACCAGCT 59 NA DesignNoJunction Rattus norvegicus 81 Fbxl18 ENSRNOG00000001117 ENSRNOT00000001479 3 1 1 60 12 13734615 13734635 CTACTGCAGAAGGACTACCAG 60 13736179 13736197 CAATCTCCTTCACCAGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Dtnb ENSRNOG00000011914 ENSRNOT00000060810 3 1 2 142 6 28144216 28168874 ATGAAGCTGCTAAAGGCTC 58 28168980 28168998 ACTCCACTCAGTGAATCCT 58 NA Rattus norvegicus 81 Esr2 ENSRNOG00000005343 ENSRNOT00000043602,ENSRNOT00000041872 1 2 4 85 6 99180255 99180273 AATGGTGGGACTGATGTGG 60 99179347 99180206 CTTCTGAGGACCTGTCCAG 59 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000042743 1 1 7 80 15 5467009 5467028 AGCTAGTTCAGAAGGAGAGG 58 5466200 5466968 GAATAAACCAAGACAGAAGGC 57 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000061525,ENSRNOT00000081979,ENSRNOT00000049746 1 4 7 80 15 5415189 5508850 TTTGAACTACAGGCTGAGTG 58 5415128 5415149 GTCATCTTATGCATATCCATCG 57 NA Rattus norvegicus 81 Spetex-2F ENSRNOG00000029659 ENSRNOT00000080252,ENSRNOT00000061525,ENSRNOT00000085883,ENSRNOT00000081979,ENSRNOT00000085137,ENSRNOT00000042743,ENSRNOT00000049746 3 7 7 86 15 5464664 5508849 TTGAACTACAGGCTGAGTG 57 5464596 5464615 CCAGTTGGTCATCTTATGCA 58 NA Rattus norvegicus 81 Slc25a3 ENSRNOG00000008289 ENSRNOT00000080824 2 1 2 80 7 31822356 31823608 CGTGGAAGAGCAGTATAGCT 59 31822295 31822315 CCACAGCTAATAATTCCTCCG 59 NA Rattus norvegicus 81 Napg ENSRNOG00000018914 ENSRNOT00000077726 3 1 2 87 18 58330804 58331390 ATGCTGCCAAAGCTTATGAG 59 58333460 58333478 CTGGCTTTCTCGATCAGCT 60 NA Rattus norvegicus 81 Phc3 ENSRNOG00000009491 ENSRNOT00000089477 1 1 2 80 2 116053577 116053596 TGCTGTACAGTCTGACATCC 60 116053638 116059662 AAATTCTGAACCTGAGCAGC 59 NA Rattus norvegicus 81 B3galnt2 ENSRNOG00000016855 ENSRNOT00000022924,ENSRNOT00000085150 2 2 2 80 17 54035548 54036080 TATCTACACTGTTCAGGAAGGC 60 54035489 54035510 TCCCGTATGTGATCTACAAGTC 60 NA Rattus norvegicus 81 Fkbp11 ENSRNOG00000054775 ENSRNOT00000087181,ENSRNOT00000077884,ENSRNOT00000087176 3 3 4 81 7 140417356 140417374 AGGAAAGACCACCATCCTC 59 140416247 140417312 TGTCTCCACATTAAACCCGA 59 NA Rattus norvegicus 81 Vsig1 ENSRNOG00000054219 ENSRNOT00000082652 1 1 2 87 X 112281116 112281134 TACCACCACTGTGACATCC 59 112281181 112290819 GTAGTAGATGGATATTGGCTCCA 59 NA Rattus norvegicus 81 LOC100909867 ENSRNOG00000048417 ENSRNOT00000071907,ENSRNOT00000080402 2 2 4 97 3 3168421 3178672 CAGTATCTGACAGAAACCACAC 59 3178729 3178748 CATCTGGACCTCTAAGTCCC 59 NA Rattus norvegicus 81 Ptcd3 ENSRNOG00000009484 ENSRNOT00000012622 2 1 3 106 4 99808013 99808033 CAGCCTTACAGATACTACGTG 58 99804388 99807263 TATAGAGCTACCTGCTCGTG 59 NA Rattus norvegicus 81 Mtr ENSRNOG00000017593 ENSRNOT00000023974,ENSRNOT00000083172 1 2 2 80 17 66245102 66245121 TCTGTGAAGACCTCATCTGG 59 66243005 66245059 CTCCTTTGCCATGAGTCTG 58 NA Rattus norvegicus 81 Mtr ENSRNOG00000017593 ENSRNOT00000023974,ENSRNOT00000083172 3 2 2 80 17 66243017 66245072 CTTACGATATGCCCAGACTC 58 66242956 66242974 TCTTCAATCGAGCCATTCC 58 NA Rattus norvegicus 81 Ufl1 ENSRNOG00000007831 ENSRNOT00000089522 2 1 2 98 5 39618414 39618433 TTTCAGTTCTCAACCCACAG 58 39617045 39618353 GAGGCCTTCTATCTCTGGG 59 NA Rattus norvegicus 81 LOC100912163 ENSRNOG00000016391 ENSRNOT00000078643 3 1 2 81 17 53666210 53673637 CACGATCTGGAGATGAAACC 59 53666148 53666168 TCTTCCTCATCTTCTTCCTCC 59 NA Rattus norvegicus 81 Atxn2l ENSRNOG00000018686 ENSRNOT00000080605 1 1 2 193 1 197909346 197909364 CAAACTGGAGTCACAGCAG 59 197908968 197909189 CCCACCCTACATACTTGGG 59 NA Rattus norvegicus 81 Lsm10 ENSRNOG00000025716 ENSRNOT00000079779 3 1 2 83 5 144106929 144106947 GACTCTTCTTCCCAAACCC 58 144107979 144107997 TTCGCTCCTTCACAGAGTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Riok1 ENSRNOG00000014049 ENSRNOT00000018936 3 1 2 81 17 27452109 27452128 CTGCAGTCTGGATAGGATGG 60 27449385 27452069 CACTTCTTTGTCTTCACTGTCTG 60 NA Rattus norvegicus 81 Samsn1 ENSRNOG00000030930 ENSRNOT00000082143,ENSRNOT00000040202 1 2 2 80 11 14254241 14265430 CTGGATGAAGAAACTGCCG 59 14254179 14254201 CTGTGATTCACTCAAGATGTCTG 60 NA Rattus norvegicus 81 Arhgef3 ENSRNOG00000014363 ENSRNOT00000019511 2 1 2 81 16 2958428 2958446 TACCTCACTGTCAAGAGGG 58 2958490 2984461 TGTTACTAGGTTCCTCGTCC 59 NA Rattus norvegicus 81 Nr2c1 ENSRNOG00000006983 ENSRNOT00000089228,ENSRNOT00000009578 3 2 2 80 7 35091077 35094603 CTAATGACACCAGATAAGGCTG 59 35094642 35094662 GAGATTCGCTAATGACGTGAC 59 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000067610 1 1 6 90 5 48012082 48012235 GCAAGAAGAGGATGGAGGA 59 48012287 48012307 CCAGAAGTCGTCCTCTAAGAG 59 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000051634,ENSRNOT00000085050,ENSRNOT00000087524,ENSRNOT00000090936,ENSRNOT00000082545 3 5 8 84 20 1963410 1966090 ACAAGTGGATTGGAGGGTC 59 1963344 1963367 GAGATAAAGAGTTTCTGAGACAGG 59 NA Rattus norvegicus 81 Uhrf1 ENSRNOG00000048411 ENSRNOT00000083848,ENSRNOT00000075265 2 2 2 81 9 10742951 10742969 GGATGACACTGAACCTGAG 58 10741400 10742908 TTCAGGATACTGCATAGTGAG 57 NA Rattus norvegicus 81 Zfp382 ENSRNOG00000020777 ENSRNOT00000087931,ENSRNOT00000028187 2 2 3 85 1 88586426 88587090 TCATCTCGGTGGGATTTCAC 60 88587138 88587156 GAACATTCGCTCTGTCCAC 59 NA Rattus norvegicus 81 Pgm2 ENSRNOG00000002185 ENSRNOT00000002977,ENSRNOT00000086994 1 2 2 80 14 45849657 45849675 GTAAGCTTTCTAGCCACCA 57 45848298 45849616 GGTAATATGATAGCCGTACTCC 58 NA Rattus norvegicus 81 Pgm2 ENSRNOG00000002185 ENSRNOT00000002977,ENSRNOT00000086994 2 2 2 80 14 45848168 45848188 AAATCTCTGCTGTCAGAGACC 60 45844260 45848129 TCTTACTGGTAGGAAGAACAGC 60 NA Rattus norvegicus 81 Gbf1 ENSRNOG00000026048 ENSRNOT00000086041 2 1 2 80 1 266027631 266027650 CTGGACACAGTGATGAAGAG 58 266027693 266029850 GCATCAGGTCTAGCAACTG 58 NA Rattus norvegicus 81 Wnt10a ENSRNOG00000052510 ENSRNOT00000086375 1 1 1 115 9 82054305 82054323 TGTTCTTCCTACTGCTGCT 59 82055392 82055410 CAATGTCAGGCACACTGTG 60 NA DesignNoJunction Rattus norvegicus 81 Zdhhc12 ENSRNOG00000015791 ENSRNOT00000050908 3 1 1 100 3 8657495 8657513 CTCAGGCTATCCCACTTCG 60 8657234 8657252 ATCATAGCGACGAACACAG 58 NA DesignNoJunction Rattus norvegicus 81 Rc3h1 ENSRNOG00000002750 ENSRNOT00000076355,ENSRNOT00000003689 2 2 5 80 13 78782830 78782850 CAATTACGGCTAGAATTGCAG 58 78782890 78784483 GTTACTAACAGCCTCTAGTCC 57 NA Rattus norvegicus 81 Krt73 ENSRNOG00000025087 ENSRNOT00000091540,ENSRNOT00000013122 2 2 2 80 7 143402864 143404911 TACCAGACCAAGTTCCAAGAG 60 143402804 143402822 AGAGATCTCGTTCCTGGTG 59 NA Rattus norvegicus 81 LOC100911881 ENSRNOG00000050181 ENSRNOT00000026390 3 1 2 80 1 214485922 214485941 TGGGATTGAACTTCTATGGC 58 214477324 214485879 TCTGTATGTACCTGGCTCC 58 NA Rattus norvegicus 81 AABR07011031.1 ENSRNOG00000059120 ENSRNOT00000080578 2 1 1 60 2 156807073 156807091 AGTTCAGCAACCTCTACGT 59 156792534 156792552 TGGAGATGATCCCATTGGT 58 NA DesignNoJunction Rattus norvegicus 81 Ptgr2 ENSRNOG00000038166 ENSRNOT00000058095 2 1 2 80 6 108021914 108026763 CGGTGATAAGTCAGATCAAGGA 60 108029789 108029809 CTCCTGTCATCATGGATTGGA 60 NA Rattus norvegicus 81 Acsm1 ENSRNOG00000042084 ENSRNOT00000084260 1 1 4 142 1 189328417 189359838 ATTCTCTGCTCAACATTCCC 58 189359942 189364282 GGTAGTCCACTGATACTGTG 57 NA Rattus norvegicus 81 Slc4a7 ENSRNOG00000005957 ENSRNOT00000008759,ENSRNOT00000049771 3 2 3 142 15 11874676 11878822 ATACTGACTTCACTCCAGGG 59 11872508 11874573 CATGTCAACCTTGCTAAAGTC 58 NA Rattus norvegicus 81 Anpep ENSRNOG00000014610 ENSRNOT00000092125,ENSRNOT00000020002 1 2 2 80 1 141565983 141566142 TGATAATAACCCGATCCACCC 60 141565923 141565941 TTCCACTCTTCCTCACCAC 59 NA Rattus norvegicus 81 Anpep ENSRNOG00000014610 ENSRNOT00000092125,ENSRNOT00000020002 2 2 2 80 1 141566233 141566832 TGATGGAGCAGTACAACGA 59 141566171 141566190 CAACAACGAGATCCCTACAC 58 NA Rattus norvegicus 81 RGD1309170 ENSRNOG00000024623 ENSRNOT00000045169,ENSRNOT00000089222 3 2 2 81 2 243453784 243453804 ATGAACACCAGAATCAACAGG 59 243452655 243453745 GCTTCAACAGGATCTTTATCTCC 59 NA Rattus norvegicus 81 RGD1304704 ENSRNOG00000000340 ENSRNOT00000092002 1 1 2 80 15 4883229 4883968 GCAGCAGGATGAAACAGAG 59 4884007 4884030 CTGTCTTCAATCTTGTAGTGTCTG 60 NA Rattus norvegicus 81 Krt75 ENSRNOG00000043203 ENSRNOT00000012640 1 1 2 120 7 143222710 143222728 CTACAGGAAGCTGCTGGAG 60 143219707 143220769 AGAAGTGACCACAGCTGAC 60 NA Rattus norvegicus 81 Mpp4 ENSRNOG00000010486 ENSRNOT00000014094 3 1 2 80 9 65939826 65939846 TGAAGATTGACGAGAAGTGTG 58 65931120 65934323 CAAATTCCTCTTTAGCTTCTGC 58 NA Rattus norvegicus 81 Asb3 ENSRNOG00000032471 ENSRNOT00000067393 1 1 2 96 14 115443076 115443096 ATTGGAAGAGACCTCCAGC 59 115445936 115445955 GTTAGACTTGGAACAGAGGC 58 NA Rattus norvegicus 81 Dnah8 ENSRNOG00000000542 ENSRNOT00000071939 3 1 2 80 20 9327894 9327962 CTATCAGGAGGGATCAGTTAAGAG 60 9328450 9328472 CCACTACCTGATGGGATATACTG 60 NA Rattus norvegicus 81 Tnrc6a ENSRNOG00000024737 ENSRNOT00000086492 3 1 2 83 1 193132483 193132503 ATAATGCACTACCTAACCAGG 57 193132546 193132724 GATTGCCATTCTGTCTAACAG 57 NA Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000076004 1 1 5 98 X 71299989 71300008 TTATGAGGAACTTGGTCGTC 57 71299893 71299928 CATTGGTTCCAGGACAGAC 58 NA Rattus norvegicus 81 LOC100910710 ENSRNOG00000007407 ENSRNOT00000085978,ENSRNOT00000010117 2 2 2 110 7 35125532 35125550 TTCAGAATGGAGCAACTGC 59 35125621 35126479 GAGCCTTATATCATTTGCCCTG 59 NA InUTR Rattus norvegicus 81 AABR07000261.1 ENSRNOG00000043188 ENSRNOT00000056227 2 1 1 97 1 7305885 7305903 ACAGCAACAACAGCAACAG 60 7313099 7313117 TCCTCTTCCTCTTCCTCCT 59 NA DesignNoJunction Rattus norvegicus 81 LOC100911750 ENSRNOG00000020110 ENSRNOT00000027233 1 1 1 60 1 220417130 220417149 CGGCAGTATGGTTTCAATCG 60 220417414 220417433 AATTAAACCCTGCCATGTGC 60 NA DesignNoJunction Rattus norvegicus 81 Atp6v0c ENSRNOG00000006542 ENSRNOT00000008736 1 1 1 157 10 13541901 13541920 GCTGACATCAAGAACAACCC 60 13537962 13537980 TTCATGATCAGCTCTGGCC 60 NA DesignNoJunction Rattus norvegicus 81 Hrg ENSRNOG00000001809 ENSRNOT00000081864,ENSRNOT00000090031,ENSRNOT00000047595 2 3 3 81 11 81635521 81635539 CGACAAGTACAAAGCGGAG 59 81625154 81635480 CCCTCCTCTCATTCTTATAACCC 60 NA Rattus norvegicus 81 Ogdh ENSRNOG00000005130 ENSRNOT00000083394,ENSRNOT00000057199 2 2 2 124 14 86479834 86613015 TAAGCCTGTCTGGTATGCT 58 86613103 86613121 ATTTCTTGAAGGCGTCCAG 58 NA Rattus norvegicus 81 Flcn ENSRNOG00000003302 ENSRNOT00000004412 3 1 2 81 10 46155486 46155504 CTCTGACCAACCAGAACCT 59 46154186 46155443 TTCACTTTGTTCATCCACTCC 59 NA Rattus norvegicus 81 Ccnl2 ENSRNOG00000018691 ENSRNOT00000025531 1 1 3 80 5 173264690 173264708 GATGTCTTTGTGCGGTTCC 60 173264751 173265127 TAAAGGGATCTCCAGTGTCC 59 NA Rattus norvegicus 81 Trmt11 ENSRNOG00000014240 ENSRNOT00000083276 2 1 2 125 1 29432191 29432210 CTTGAATCGCTATCTGCTGC 60 29436642 29440768 GGAGATTTATTCTTTGTCTCCTGAC 60 NA Rattus norvegicus 81 Tnfrsf8 ENSRNOG00000016782 ENSRNOT00000085929 2 1 2 80 5 163214865 163214888 TGACTACTACAAACGAAGACAG 58 163212954 163212972 CAGAACATGGAGCCTTCTC 58 NA Rattus norvegicus 81 Camsap3 ENSRNOG00000000986 ENSRNOT00000084906 1 1 2 84 12 2145515 2145533 AGAACAAGAAGCAACCCAG 58 2145581 2148311 CTTGCGGTATCGAATCGAG 59 NA Rattus norvegicus 81 RGD1310852 ENSRNOG00000006370 ENSRNOT00000090270 3 1 2 106 7 97900334 97937639 AAGAAGCTATGGCAGTGGT 59 97900246 97900265 TATTCCTGTCGTCTGTACGC 60 NA Rattus norvegicus 81 Mefv ENSRNOG00000008134 ENSRNOT00000011073 1 1 3 91 10 12048740 12048761 CAAGGACTACAGCAATGTCC 59 12048815 12048833 TTTCAAGACTCCTGGGTCG 59 NA Rattus norvegicus 81 Ebna1bp2 ENSRNOG00000045760 ENSRNOT00000072245 1 1 2 80 5 137670292 137670387 CTCAGATCAAGAGTTGCAGGA 60 137670428 137670447 TTCTTCGGCTTCTCTAGCAC 60 NA Rattus norvegicus 81 Klk1c9 ENSRNOG00000032857 ENSRNOT00000091964,ENSRNOT00000071416 2 2 5 82 1 100133539 100133557 TTCAGCAAATACCTCTGCG 58 100133602 100134529 TGGTAATTGTTGCTAGAGCA 57 NA Rattus norvegicus 81 Zbbx ENSRNOG00000009792 ENSRNOT00000081423 3 1 2 80 2 173472329 173472349 GATGTCTTGAAGGATCAGCAG 59 173463490 173472288 TCTCTGTGATTTCTGGCCTG 60 NA Rattus norvegicus 81 Kcnk2 ENSRNOG00000002653 ENSRNOT00000003684,ENSRNOT00000077282 2 2 2 80 13 107692270 107733316 AAGACGAAGGAAGAGGTGG 59 107692208 107692226 TGTTTCCTTGAACTCGGCT 60 NA Rattus norvegicus 81 Zfp90 ENSRNOG00000020087 ENSRNOT00000027209,ENSRNOT00000087655 3 2 2 80 19 38601994 38602014 ATCTTCAAACTGGAGCAAGGA 60 38602056 38607144 GGTCTTCCAGTCTGGACAG 59 NA Rattus norvegicus 81 Nrxn2 ENSRNOG00000021103 ENSRNOT00000031227,ENSRNOT00000028651 2 2 3 86 1 221893512 221893530 CACAGATGACCTTCTGGTG 58 221893579 221906120 AACTCTCCTCCAGTACTAGG 57 NA Rattus norvegicus 81 Erc2 ENSRNOG00000015148 ENSRNOT00000020427 1 1 3 84 16 3674867 3674886 ATGCAACAAACTAGAAGCAC 57 3679148 3679174 GGGAATGTTATGACTTACTGGA 58 NA Rattus norvegicus 81 Tmem51 ENSRNOG00000014197 ENSRNOT00000089981,ENSRNOT00000019171 1 2 2 119 5 160575351 160575369 CTATCCATCTGCCTGAGCA 59 160571605 160575268 CTCTTCCTGGCTGTCTTCC 60 NA Rattus norvegicus 81 Lims1 ENSRNOG00000037765 ENSRNOT00000064288 3 1 2 89 20 27954722 27979742 GAAGAGCTGAGCAACATGG 59 27979794 27979813 GTTCACGATCTTCTCAGCAG 59 NA Rattus norvegicus 81 Dlg1 ENSRNOG00000038597 ENSRNOT00000078737,ENSRNOT00000058885 3 2 2 80 11 72164734 72167900 TGAGCATTTCACAGCTATTGTC 59 72164675 72164696 GACTGCTCTTCTATGATCTGCT 60 NA Rattus norvegicus 81 Oaz3 ENSRNOG00000020863 ENSRNOT00000028303 3 1 2 80 2 195677634 195678263 AAGAACTCTATTCAGCTGGG 57 195677573 195677592 GGAAGTCTAACTGAACTGGG 58 NA Rattus norvegicus 81 Csnk1a1 ENSRNOG00000017106 ENSRNOT00000044346,ENSRNOT00000066133,ENSRNOT00000078783 2 3 3 80 18 56899339 56899359 CGAAGACCTCTTCAATTTCTG 57 56899398 56900108 ATTCTACTGATCATCTGGTCAG 57 NA Rattus norvegicus 81 Csnk1a1 ENSRNOG00000017106 ENSRNOT00000044346,ENSRNOT00000066133,ENSRNOT00000078783 1 3 3 80 18 56899337 56899359 CTCGAAGACCTCTTCAATTTCTG 60 56899397 56900106 TCTACTGATCATCTGGTCAGC 59 NA Rattus norvegicus 81 Asic1 ENSRNOG00000059765 ENSRNOT00000084075 2 1 3 83 7 141347003 141348665 TCTCAGTGGTCTTCACTCG 59 141348712 141348730 CTTTCATGGTCTTCAGCCG 59 NA Rattus norvegicus 81 Zc3h7a ENSRNOG00000002420 ENSRNOT00000003309 3 1 2 83 10 4553630 4553648 TCACTGAAAGCAGTTCCTG 58 4555663 4556067 TCCATTTGCAAACACTGGT 58 NA Rattus norvegicus 81 LOC691286 ENSRNOG00000002845 ENSRNOT00000003801 3 1 2 85 10 43885483 43892083 CTTCTCTACAGACTTCTGGGA 58 43885418 43885436 GACACTTGAGACCACTGGA 59 NA Rattus norvegicus 81 Tax1bp1 ENSRNOG00000008393 ENSRNOT00000041988 3 1 2 84 4 82816412 82816432 TGAGCTAGAGGACAGTTACAG 59 82816475 82820399 TGTAAGTTCACTGTAACTGTCC 58 NA Rattus norvegicus 81 Col1a2 ENSRNOG00000011292 ENSRNOT00000089292 2 1 2 83 4 31534227 31534245 GCTCAGCTTTGTGGATACG 59 31534289 31537261 GATCCCATTTGTAAAGATTGGC 58 NA Rattus norvegicus 81 Rfx3 ENSRNOG00000014486 ENSRNOT00000077544 3 1 2 80 1 246010579 246031850 CCAAAGTGAGACCATCATGC 59 246010518 246010539 CTAGCCACAGATGTTTGTAGAG 59 NA Rattus norvegicus 81 Ttbk2 ENSRNOG00000011059 ENSRNOT00000066181 3 1 2 83 3 112713639 112716596 GGAACAGGGAGCAAGTAGG 60 112713574 112713592 AGGTGCTGAATTCTGGAGG 59 NA Rattus norvegicus 81 Atp5c1 ENSRNOG00000019223 ENSRNOT00000064802 3 1 4 181 17 72209468 72218772 GGATCCAAGTTCGAAACATGG 60 72219622 72225934 CTTCTCATACAGAGCCAAGGA 59 NA Rattus norvegicus 81 Ap1ar ENSRNOG00000024492 ENSRNOT00000055607,ENSRNOT00000082173 2 2 2 80 2 232151663 232151682 CCAGAAGACGACTTTGAAGC 59 232151415 232151625 ATCAGATGAGAGTCTACTACTTCG 59 NA Rattus norvegicus 81 Ppp2r3c ENSRNOG00000023591 ENSRNOT00000082198,ENSRNOT00000033533 1 2 2 80 6 76063468 76063487 CACCATGACCAATGTCTTCC 59 76059981 76063429 AGGTAGGTCTTATAGTCCATCTC 58 NA Rattus norvegicus 81 Krt85 ENSRNOG00000008436 ENSRNOT00000011374,ENSRNOT00000088017 2 2 2 80 7 143163543 143163562 TCAAGGCTCAGTATGATGAC 57 143163284 143163500 TCATCTCCTCACACTTGGT 58 NA Rattus norvegicus 81 Dach2 ENSRNOG00000004869 ENSRNOT00000074811 3 1 2 101 X 85462659 85462802 TTGACCAACATTCAGGGTC 58 85462864 85462885 GTAGAGCTCTATTCGTAGTTCC 58 NA Rattus norvegicus 81 Rspo2 ENSRNOG00000037687 ENSRNOT00000087177,ENSRNOT00000082741 3 2 3 80 7 81976519 81976539 AATACCATGTCCAACCATTGC 59 81925878 81976478 TTTGGTGTTCTCTTCCCTCC 60 NA Rattus norvegicus 81 AC130139.1 ENSRNOG00000058058 ENSRNOT00000083075,ENSRNOT00000089902 3 2 3 92 10 13306215 13306344 GAGCCCAGAATATTCTGGG 57 13306400 13306418 TTAAGAATATCCGCAGGCC 57 NA Rattus norvegicus 81 Tspy1 ENSRNOG00000054648 ENSRNOT00000077988,ENSRNOT00000083382 3 2 2 80 Y 152647 153828 GGCTAAAGCTATGATGAACCA 58 153866 153888 CTCAACATGTAGCTCAGTAAGTC 59 NA Rattus norvegicus 81 Zbtb25 ENSRNOG00000006441 ENSRNOT00000008424,ENSRNOT00000089594 2 2 2 86 6 99388226 99388244 CGTTTACTTCAAAGCCCAC 57 99382695 99388177 ATGCATTCACTTGTTTGGTG 58 NA Rattus norvegicus 81 LOC100364190 ENSRNOG00000006617 ENSRNOT00000008688,ENSRNOT00000067874 1 2 2 82 4 76995628 77019825 CACTTGGATTCAGCCAGTG 59 77019870 77019889 GCTGAGTTTCTGTTGACTCC 59 NA Rattus norvegicus 81 Smim8 ENSRNOG00000023035 ENSRNOT00000035840,ENSRNOT00000089172 2 2 4 61 5 50232939 50232957 ACAACCTTGTTTCGAGCTG 59 50231069 50232915 GCCATCACAGGTTTGTTAGG 59 NA DesignRelaxed Rattus norvegicus 81 Cdkl2 ENSRNOG00000002506 ENSRNOT00000079304,ENSRNOT00000046771 1 2 3 89 14 17555403 17555421 ATATCCCAAAGTCGACGTG 57 17555472 17555618 CTAGAATTTCGAGCTATGCCT 58 NA Rattus norvegicus 81 Rexo2 ENSRNOG00000018939 ENSRNOT00000087265,ENSRNOT00000047633 1 2 2 80 8 52813071 52813095 GAGAAGGATCAGATTATTGAGATGG 59 52808684 52813034 AATCAGGTTGGGACCTTCAG 60 NA Rattus norvegicus 81 Eif4g1 ENSRNOG00000001738 ENSRNOT00000041777 1 1 2 123 11 83925085 83925627 TCTCTGCAGCACTTCTACC 59 83924980 83924998 TTACTTGGGATCCAGCAGG 59 NA Rattus norvegicus 81 Stmn1 ENSRNOG00000016810 ENSRNOT00000076864,ENSRNOT00000076052,ENSRNOT00000076736,ENSRNOT00000022574 3 4 4 81 5 152682825 152682843 GCCAGTGGATTGTGTAGAG 58 152682885 152683368 AGCTCTTTCACCTGAATATCAG 58 NA Rattus norvegicus 81 Rce1 ENSRNOG00000019468 ENSRNOT00000026454 2 1 2 81 1 219862124 219862144 TTCACCACATTATTGAGCAGC 59 219861799 219862081 TAGGAGAACTGGAACGCTG 59 NA Rattus norvegicus 81 Ciita ENSRNOG00000002659 ENSRNOT00000085310 1 1 3 80 10 5240097 5253200 TACCTGCAAGGCCATACTC 59 5240035 5240054 ATCACTGTTAAGGAGCTCCA 59 NA Rattus norvegicus 81 Gria2 ENSRNOG00000054204 ENSRNOT00000083361 2 1 2 103 2 179589764 179591409 AAAGGATCCTCATTAAGAACCC 58 179589682 179589701 TCACCTTTATCGTACCACCA 59 NA Rattus norvegicus 81 Top3a ENSRNOG00000005099 ENSRNOT00000080083 2 1 2 80 10 46993386 46993462 GCTCTATACACAAGGATTAGTAGC 59 46992938 46992959 GTGCTGGGAATTGAATTTAGGT 59 NA Rattus norvegicus 81 Hipk3 ENSRNOG00000011358 ENSRNOT00000089554 2 1 2 94 3 94358121 94358139 CCATAAGGGTGGACAACAC 58 94357827 94358063 CCATGTCTGCTGTGAAAGG 59 NA Rattus norvegicus 81 Wbp1l ENSRNOG00000020020 ENSRNOT00000027118,ENSRNOT00000080509 2 2 2 119 1 266401976 266409952 ATGAACTCTGGTGGTTCTGG 60 266410034 266410052 TGATTTCATGTTGCCGCTG 60 NA Rattus norvegicus 81 Yif1a ENSRNOG00000020201 ENSRNOT00000027406,ENSRNOT00000078657 3 2 2 80 1 220471088 220471245 CATAGTGCACAAAGAGCTACAC 60 220471286 220471304 GCTACATAGGCTGTGTCCA 59 NA Rattus norvegicus 81 LOC362863 ENSRNOG00000026807 ENSRNOT00000091725 3 1 3 80 7 27250456 27250482 GAGCTGTATCCAATGATCATGG 59 27262804 27262824 GTTCTCCACAAACTCTTCGTG 60 NA Rattus norvegicus 81 LOC100912525 ENSRNOG00000027365 ENSRNOT00000038775,ENSRNOT00000058985 3 2 2 79 4 82159737 82159756 GGATGAAGAAGATCCACGTG 59 82159186 82159204 GGTATAGGCGGTTCGAGAG 60 NA DesignNoJunction Rattus norvegicus 81 Sspn ENSRNOG00000001807 ENSRNOT00000002465 3 1 1 62 4 180291582 180291600 TCAGAGACACTCCGTTCTG 59 180315486 180315504 TGAACAGTCCAAGGTAGGC 59 NA DesignNoJunction Rattus norvegicus 81 Pla2g16 ENSRNOG00000021206 ENSRNOT00000032879 2 1 2 120 1 222844720 222862239 CATACCAGAACCCAAGCCT 59 222862323 222869435 TCCTGGGATTTCACTTGGG 59 NA Rattus norvegicus 81 Kmt2e ENSRNOG00000021614 ENSRNOT00000075902,ENSRNOT00000076000,ENSRNOT00000084050 2 3 8 80 4 8194327 8194475 AATCAAGAGGGATATGACCGAC 60 8194268 8194287 CAGGCCTAGCTCATTTAGGT 59 NA Rattus norvegicus 81 Relt ENSRNOG00000025075 ENSRNOT00000038408,ENSRNOT00000077661 3 2 2 130 1 165886104 165886123 GAGAGCGATCTTCCTGAGTC 60 165885856 165886011 ACATAGCGGTTCTCCTCAG 59 NA Rattus norvegicus 81 Stac2 ENSRNOG00000004805 ENSRNOT00000091978 2 1 2 82 10 85994739 85994757 TAAGACATGCAAGGTCAGC 58 85994526 85994693 AAGATGTGGATGTCTTGCC 58 NA Rattus norvegicus 81 Kcnk6 ENSRNOG00000020598 ENSRNOT00000027974,ENSRNOT00000089578 3 2 2 83 1 87167611 87167852 GCTTGTCACAGCATACCTC 59 87167546 87167564 CCATGGAGGTCAGAAACAC 58 NA Rattus norvegicus 81 Apoe ENSRNOG00000018454 ENSRNOT00000080453,ENSRNOT00000041891,ENSRNOT00000091574 2 3 3 101 1 80614202 80614220 AACCGCTTCTGGGATTACC 60 80613721 80614138 CATCAGTACCGTCAGTTCCT 59 NA Rattus norvegicus 81 Shprh ENSRNOG00000014450 ENSRNOT00000088292 3 1 2 83 1 5248351 5250567 TGCTGGTGATAACTCCCTG 59 5250609 5250632 CCTGTGTACGGATTATAGTAGAGG 60 NA Rattus norvegicus 81 Gstz1 ENSRNOG00000047708 ENSRNOT00000082027 3 1 2 142 6 111180311 111180589 GCAAGCCTGTTCTCTATTCC 59 111181826 111182327 CTGAAATTCCTCGGAGAACTG 59 NA Rattus norvegicus 81 Capn5 ENSRNOG00000014251 ENSRNOT00000019370 3 1 2 142 1 163114614 163114633 AATTACTCAGCTCTGAAGCG 58 163103732 163114509 TCGCAGATATCCTTAGGCC 59 NA Rattus norvegicus 81 Pmpca ENSRNOG00000026775 ENSRNOT00000031622 1 1 2 87 3 3837890 3837908 TGTCAAATGTCAGCCTTGG 58 3837960 3838057 AATCCTCCTCAGGAAGGAG 58 NA Rattus norvegicus 81 Ercc5 ENSRNOG00000022812 ENSRNOT00000076636,ENSRNOT00000059349 2 2 3 60 9 50968846 50968866 CCCTGTATCCAGTACTAAAGC 58 50970312 50970331 AAGGAATCAATCCGTAGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Ercc5 ENSRNOG00000022812 ENSRNOT00000076636,ENSRNOT00000059349 3 2 3 60 9 50968846 50968867 CCCTGTATCCAGTACTAAAGCA 59 50970312 50970331 AAGGAATCAATCCGTAGCTG 58 NA DesignNoJunction Rattus norvegicus 81 Ercc5 ENSRNOG00000022812 ENSRNOT00000059349 1 1 3 84 9 50960156 50960174 GCTTATCTACTGGGCAGTG 58 50960221 50960244 ACCAGGAATTTGGAGAATCTC 58 NA Rattus norvegicus 81 Ercc5 ENSRNOG00000022812 ENSRNOT00000059349 2 1 3 87 9 50955869 50960135 CAACCAATTGGGACTGGAC 59 50960185 50960204 AACAGTTGGAATCCCTTCAG 58 NA Rattus norvegicus 81 Hmg20b ENSRNOG00000020601 ENSRNOT00000028002,ENSRNOT00000086194 2 2 2 84 7 11239681 11239700 CTTTGTAGTGGCTGTCAAGC 60 11239747 11240163 CTTCTTCACTGGCTCCTCC 60 NA Rattus norvegicus 81 Crispld2 ENSRNOG00000016752 ENSRNOT00000087857 3 1 3 132 19 52671144 52671162 AAACTGGATTGGTGAGGCT 59 52675786 52675807 TCTCATCCACTCTGGTTTCTG 60 NA Rattus norvegicus 81 Sfmbt1 ENSRNOG00000016645 ENSRNOT00000022865,ENSRNOT00000084713 2 2 2 80 16 6877765 6877784 TGAAGAAGTGAGCATAGCCA 59 6877825 6878778 ACAGGCTTCTTAGAACCTTCC 60 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000042642 3 1 10 95 7 117253868 117289764 CATTGCAGATGAACGAGACC 59 117253483 117253501 TACAGGTCACTGATGTGCC 59 NA Rattus norvegicus 81 Slc11a2 ENSRNOG00000019550 ENSRNOT00000081327,ENSRNOT00000026531 1 2 4 80 7 142036960 142036978 TTGCCCTCATCCCTATCCT 60 142035033 142036916 CGATCCTCCAGCCTATTCC 59 NA Rattus norvegicus 81 Ugp2 ENSRNOG00000008079 ENSRNOT00000067668,ENSRNOT00000081245 2 2 2 82 14 106220072 106232404 GGAAGATTCGATTCAACCCT 58 106220009 106220027 CCACCAGTTTGTTCAACAC 57 NA Rattus norvegicus 81 Capn8 ENSRNOG00000003468 ENSRNOT00000067005 3 1 2 80 13 101039211 101039763 GAAAGCAGGTTTCACCCTC 59 101039805 101039825 AAGTCAACACCAAGCTTACTG 59 NA Rattus norvegicus 81 Tln2 ENSRNOG00000018373 ENSRNOT00000031988 3 1 5 145 8 73164586 73164613 GTCAACTATGTAGAGTCAGTTTCC 59 73161438 73161456 AACATTGAAAGTCTCGGGC 59 NA Rattus norvegicus 81 Tln2 ENSRNOG00000018373 ENSRNOT00000064613 3 1 5 80 8 73065640 73073875 CACAGCTCAGGAAATGATTGG 60 73065580 73065600 TTCTGCACCAGGAAGATACAG 60 NA Rattus norvegicus 81 Trak2 ENSRNOG00000010881 ENSRNOT00000087458 1 1 3 96 9 65706111 65706129 CTTCAACTGGAGCAGAAGC 59 65702282 65706051 AAACCAGAGCTGAGACTGG 59 NA Rattus norvegicus 81 Dgat2 ENSRNOG00000016573 ENSRNOT00000081669 2 1 2 82 1 164129062 164141362 GAAGCTCTGTAATGGGCAC 59 164128998 164129016 CTTGGATCTGTTGAGCCAG 58 NA Rattus norvegicus 81 Grsf1 ENSRNOG00000003392 ENSRNOT00000086571 2 1 2 83 14 21041841 21042205 TTCAGTGAAACGGAGTCCA 59 21042252 21042270 TCCTAACTTGGATGGGCTC 59 NA Rattus norvegicus 81 Zbp1 ENSRNOG00000006314 ENSRNOT00000008365,ENSRNOT00000081036 2 2 2 81 3 171278617 171278635 ATCCACCGTAGGTCAAAGG 59 171277526 171278573 CTTCAGAACTTGCACCTGTG 60 NA Rattus norvegicus 81 Gtf2h1 ENSRNOG00000012360 ENSRNOT00000087920 3 1 2 92 1 102874792 102874813 AAGAGTAATTTGGAACGGTTCC 59 102874866 102876983 GTGAGTCACCAGGTTTGTG 59 NA Rattus norvegicus 81 Trrap ENSRNOG00000025244 ENSRNOT00000076323,ENSRNOT00000030545,ENSRNOT00000091346 1 3 3 80 12 11544132 11544151 CCATCTCCCGCTACTATGAC 60 11540848 11544089 GAATGTCTCGGAGGACCTG 60 NA Rattus norvegicus 81 Stxbp5 ENSRNOG00000013351 ENSRNOT00000040559 2 1 3 89 1 3879193 3890876 CGACTTCCGCAAAGATGTC 59 3872201 3872222 GAGATCTGCTGAAGGAATTGTC 59 NA Rattus norvegicus 81 Stxbp5 ENSRNOG00000013351 ENSRNOT00000049699 1 1 3 81 1 3879189 3886251 TGATCTAGCAAAGATGTCAAGG 58 3872208 3872228 GCTGAAGGAATTGTCTTTCAC 58 NA Rattus norvegicus 81 Rnase4 ENSRNOG00000025625 ENSRNOT00000090272 1 1 2 79 15 28023026 28023044 CTAGACTGGTCCCAGTCAG 59 28034121 28034139 TGGGTCCTCTGTATGTCCA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Polr3gl ENSRNOG00000021209 ENSRNOT00000085006,ENSRNOT00000028801 1 2 2 80 2 198704291 198704311 CACCATTATCCTTCCCAAGAG 58 198704125 198704254 TTCTCTAGAGTCTCTAGTTTCTGG 59 NA Rattus norvegicus 81 Lpar2 ENSRNOG00000010758 ENSRNOT00000083537 1 1 2 85 16 21347236 21347256 AGACAGTTGTCATCATTCTGG 58 21345288 21345306 TTTACAGTCCAGACCGTCC 59 NA DesignNoJunction Rattus norvegicus 81 Zc3h18 ENSRNOG00000028501 ENSRNOT00000039273 1 1 2 82 19 55210274 55221874 CATGAAAGGAAACTGCACG 58 55221920 55221938 TGATGAGGGAGTAGTTCCC 58 NA Rattus norvegicus 81 Phf14 ENSRNOG00000005775 ENSRNOT00000089897 3 1 3 80 4 38338325 38338345 AGGCTGAAGACTTAAGAACTG 58 38338386 38378653 CAGACAATCTCATCCTGACG 58 NA Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000078658 3 1 6 151 20 3301107 3305334 CTGGTGATCCCAAGTCAGG 60 3305449 3306026 GCGGTCAGATTTGTCTTCC 59 NA InUTR Rattus norvegicus 81 Acp1 ENSRNOG00000005260 ENSRNOT00000007287 3 1 2 82 6 49844352 49844457 AACGTTTCAGATAACTGGAGG 58 49844290 49844308 TTCTGCCCTCGATAGTCAG 59 NA Rattus norvegicus 81 Clec18a ENSRNOG00000022721 ENSRNOT00000073721 3 1 2 101 19 43163608 43163626 TTGGTCTCTTGCTTCTGCT 59 43163688 43164044 AGATGATATCTTGCACAATGGG 59 NA Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000087739,ENSRNOT00000089099 3 2 7 96 5 166072413 166075276 GGAAGTGGAGGCAAATATCTG 59 166072337 166072355 ATGCTGTGGAGAAATTGCC 59 NA Rattus norvegicus 81 Rbfa ENSRNOG00000055647 ENSRNOT00000090319,ENSRNOT00000080478 2 2 2 80 18 76707445 76707465 AAACCCTGAGAAATGTTCCAC 59 76705400 76707405 CCAGTAACCGATCTACCTCAG 60 NA Rattus norvegicus 81 Gbgt1 ENSRNOG00000039906 ENSRNOT00000006553,ENSRNOT00000074271 2 2 2 81 3 5121017 5121038 GATGTCCAGAAAGTTGTAAGTG 57 5122313 5123381 CAAGAACATCATTCCTAATGGG 57 NA Rattus norvegicus 81 Tmem59l ENSRNOG00000022432 ENSRNOT00000038139,ENSRNOT00000082319 2 2 2 81 16 20694964 20694982 CTCCGTCCTGATCATCCTG 59 20695025 20695163 AGTTAGAGGCTGGAACTTGAG 60 NA Rattus norvegicus 81 Slc12a1 ENSRNOG00000005367 ENSRNOT00000008857 2 1 3 81 3 117430241 117430259 GGTGCATGCTGAACATCTG 60 117430304 117435554 ACTCCAAGACCAATTCCCG 60 NA Rattus norvegicus 81 Acss3 ENSRNOG00000004448 ENSRNOT00000082141 2 1 2 80 7 49063873 49074131 GAAATATCGTGGTAAAGTTGCC 58 49063814 49063833 ATAAATGCTTGAACGCTTCC 57 NA Rattus norvegicus 81 Gpha2 ENSRNOG00000021020 ENSRNOT00000028536 1 1 1 84 1 221596909 221596927 AGTGCTGTACCATCAGCAG 60 221597061 221597079 GTGAAGATCTCGAGCTCCC 60 NA DesignNoJunction Rattus norvegicus 81 Gpha2 ENSRNOG00000021020 ENSRNOT00000028536 3 1 1 88 1 221596905 221596924 TCTCAGTGCTGTACCATCAG 59 221597061 221597079 GTGAAGATCTCGAGCTCCC 60 NA DesignNoJunction Rattus norvegicus 81 Rnf103 ENSRNOG00000007272 ENSRNOT00000064374 2 1 2 84 4 99414430 99414453 GTGCCAATAAATGTGTCACCA 60 99414499 99414517 TCCGGCTCCATATCTTCCT 60 NA Rattus norvegicus 81 Mfap4 ENSRNOG00000002382 ENSRNOT00000078231,ENSRNOT00000003268 1 2 2 103 10 47767081 47767099 GTTGACTTCTCCATCTCCC 57 47767166 47767553 TAGGACAGTGAGTCACCTG 58 NA Rattus norvegicus 81 Suco ENSRNOG00000026542 ENSRNOT00000075936,ENSRNOT00000036483 2 2 4 121 13 79740183 79744863 TTTACTGGCAAAGAAGACCC 58 79738395 79738414 TCTGCAGGCTTTATTGTCTC 58 NA Rattus norvegicus 81 Suco ENSRNOG00000026542 ENSRNOT00000087323,ENSRNOT00000084058 1 2 4 119 13 79740181 79744857 GGCAAAGAAGTAGACCCGA 59 79738394 79738414 ATCTGCAGGCTTTATTGTCTC 59 NA Rattus norvegicus 81 Map7 ENSRNOG00000012701 ENSRNOT00000017401,ENSRNOT00000079845 1 2 2 80 1 15731790 15736439 CATTCACGGGATATCGAGCT 60 15736482 15736500 GACAGAGTCCTTCGGACAC 60 NA Rattus norvegicus 81 Mbp ENSRNOG00000016516 ENSRNOT00000022303,ENSRNOT00000058295,ENSRNOT00000022280 1 3 5 80 18 79424925 79426825 TCTTCAAGAACATTGTGACACC 59 79427267 79427286 AGCTAAATCTGCTGAGGGAC 60 NA Rattus norvegicus 81 Pa2g4 ENSRNOG00000004904 ENSRNOT00000081125 2 1 2 80 7 2984830 2984850 CAGGGAAGATCTTCAAGAAGG 58 2984511 2984562 AGTCCTGGTCATTTACGGA 58 NA Rattus norvegicus 81 Pa2g4 ENSRNOG00000004904 ENSRNOT00000006578 2 1 2 80 7 2980224 2980242 AACCAGTGGTCCCTTTGAG 60 2980045 2980181 CTCTGGAGAAGAGCCTTCAG 60 NA Rattus norvegicus 81 Card6 ENSRNOG00000001271 ENSRNOT00000079333,ENSRNOT00000039057 1 2 2 106 2 54819098 54823566 TAAAGCAGGAAGTTCCACG 58 54819010 54819028 GAGCTCTGCTATTTCTGGG 58 NA Rattus norvegicus 81 Slc27a2 ENSRNOG00000010128 ENSRNOT00000067700 2 1 2 82 3 119024872 119024891 GAAGTCACGTTCACCACAC 59 119028046 119028065 TGGTGATTAATGGTTGCAGC 59 NA Rattus norvegicus 81 Rps6ka5 ENSRNOG00000004362 ENSRNOT00000091693 3 1 2 80 6 124596591 124596611 TATGAGCTACTAACTGGAGCA 58 124583673 124596555 TAAGATTCTCCTAGATATCTCAGCC 59 NA Rattus norvegicus 81 Ttll2 ENSRNOG00000033901 ENSRNOT00000044831 2 1 1 85 1 53562976 53562994 CTTTGGGTGATGTGACTGC 59 53562753 53562771 ATCCTCCATCCTCAAACGC 60 NA DesignNoJunction Rattus norvegicus 81 Cd5 ENSRNOG00000020872 ENSRNOT00000082482 1 1 4 88 1 226791118 226791730 GAACACTGGGTGACTTGTG 59 226779523 226779541 CTGACACTTGGAGTTGGAG 58 NA Rattus norvegicus 81 Wnt16 ENSRNOG00000005781 ENSRNOT00000007822 2 1 1 60 4 49372182 49372203 CCATGAATCTACACAACAACGA 59 49378959 49378978 TCCACAGACATTAACTTGGC 58 NA DesignNoJunction Rattus norvegicus 81 Wdr62 ENSRNOG00000049708 ENSRNOT00000047120 1 1 2 80 1 91004421 91004441 AATATGAAGCACATCGTGTCC 59 91004481 91005274 CACCACAATGTCTTTCTTCCA 59 NA Rattus norvegicus 81 Igf1 ENSRNOG00000004517 ENSRNOT00000081822,ENSRNOT00000005995,ENSRNOT00000085680 1 3 4 82 7 28468859 28468877 TGACATGCCCAAGACTCAG 60 28470322 28485473 GTGTACTTCCTTTCCTTCTCCT 60 NA Rattus norvegicus 81 Cpne7 ENSRNOG00000015397 ENSRNOT00000068231 2 1 2 81 19 55939426 55939447 TGTGAATGCCAAGTACAAACAG 60 55939489 55940696 GATGGCTACCTTCAGGTCC 60 NA Rattus norvegicus 81 Rnf128 ENSRNOG00000055721 ENSRNOT00000086014,ENSRNOT00000086308 1 2 2 80 X 110846463 110862325 AAAGTAGGAAGCAGAGGCA 59 110862369 110862387 CTCCTTGTTTCAAGGTGCG 60 NA Rattus norvegicus 81 Specc1 ENSRNOG00000002903 ENSRNOT00000080682 1 1 2 80 10 48465463 48470643 AAGCTCAGTGTTGAAAGAAGAG 59 48470684 48470702 TTTCAGGAGTGCATTACGC 59 NA Rattus norvegicus 81 Ctdspl2 ENSRNOG00000022141 ENSRNOT00000037168 1 1 2 80 3 113933536 113933987 ACCACCCATAATAGCACCAG 60 113934029 113934048 TCCCAGTCTTCCTCATAGGT 59 NA Rattus norvegicus 81 Fam120b ENSRNOG00000058790 ENSRNOT00000082790 1 1 2 80 1 57370770 57370788 AGAGAAGAGCTGCAATCCG 60 57370830 57382149 GTAATCCAGCTGGACAAACAG 59 NA Rattus norvegicus 81 Dock9 ENSRNOG00000011969 ENSRNOT00000064705 3 1 2 81 15 107972668 107972686 AGTGACAGAGGTCATGCAC 60 107971210 107972623 TTCGAAGAATCCCTGTCCG 60 NA Rattus norvegicus 81 Me2 ENSRNOG00000015582 ENSRNOT00000049759,ENSRNOT00000079093 3 2 2 80 18 69742171 69742993 TTAGAAGCTGCAAAGGCAC 59 69742109 69742130 ATTAGCAAGTGATGGGTAAAGC 59 NA Rattus norvegicus 81 Rara ENSRNOG00000009972 ENSRNOT00000084644,ENSRNOT00000008659 1 2 2 80 10 86880072 86880232 TACACTACGAACAACAGCTC 58 86880275 86880293 CTTGGTGGAGAGTTCACTG 58 NA Rattus norvegicus 81 Prtfdc1 ENSRNOG00000024874 ENSRNOT00000034907,ENSRNOT00000080193 3 2 2 84 17 87933920 87956852 CTGGCTGGAAAGAATGTTCTC 59 87932529 87932548 ATTTCTCAATGCTGCTGAGC 59 NA Rattus norvegicus 81 Gldc ENSRNOG00000011599 ENSRNOT00000067612 2 1 2 80 1 248308192 248308213 CAGAAATCGCCATTCTAAATGC 59 248301705 248308151 CCACGTACCCTCTGAAGAG 59 NA Rattus norvegicus 81 Aamp ENSRNOG00000014399 ENSRNOT00000089354 3 1 3 60 9 81562813 81562833 TCCTTTGTCCTCTGGTTATCC 59 81562773 81562792 CATACCCTACCACAGCTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kctd14 ENSRNOG00000012494 ENSRNOT00000016654 2 1 1 122 1 162419508 162419526 AAACCTACTCAAGGAGCCC 59 162423283 162423301 GGATGTTTCATCAGGGTGC 59 NA DesignNoJunction Rattus norvegicus 81 Ralgapb ENSRNOG00000014836 ENSRNOT00000020556 2 1 3 80 3 154905166 154905189 GTCACTACATTTGGTGATTCAG 58 154905230 154905248 TCTCGTCCAACACTTTCTG 57 NA Rattus norvegicus 81 Mat2a ENSRNOG00000013520 ENSRNOT00000084782,ENSRNOT00000018170 1 2 2 80 4 100299539 100299557 ACAGTCACCAGATATCGCC 59 100299402 100299497 AACATCAAACCCTGATCTCCT 59 NA Rattus norvegicus 81 Car8 ENSRNOG00000005669 ENSRNOT00000007802,ENSRNOT00000081296 1 2 2 80 5 21344901 21345643 GTTACGAGGAAGGTGTTGAG 58 21344840 21344859 TGGAGTTCAGGTTGATAGGT 58 NA Rattus norvegicus 81 LOC683410 ENSRNOG00000049733 ENSRNOT00000071298,ENSRNOT00000072693 3 2 2 85 7 142759248 142759266 CTTAGACCTCCAGGGAAGC 59 142759315 142759338 CGTGGTTCACTTTCCTCCT 60 NA Rattus norvegicus 81 Dnajc6 ENSRNOG00000052887 ENSRNOT00000086539 3 1 2 99 5 120459326 120459344 AGCACTACTGCACAAAGGA 59 120459404 120461032 GACTTCTCTGATTTCTGATCCC 58 NA Rattus norvegicus 81 LOC100361584 ENSRNOG00000023561 ENSRNOT00000084240,ENSRNOT00000032112 1 2 3 88 4 158244479 158316613 GAGAAGGACTTGGAGAGCA 59 158316665 158316683 AAGAACTCTGCTTCCCTGG 59 NA Rattus norvegicus 81 Actl6b ENSRNOG00000001408 ENSRNOT00000087817,ENSRNOT00000001910 1 2 2 80 12 22209636 22209973 CTCAAGAACGGCATGATTGAG 60 22209576 22209595 TTCGGACTTGACATGTTTGC 60 NA Rattus norvegicus 81 Nudt5 ENSRNOG00000017741 ENSRNOT00000023892 2 1 2 80 17 76391275 76391294 GTGACAGTGACCATCAATGG 59 76389531 76391232 CACTTCCACAAACTCACCC 59 NA Rattus norvegicus 81 Kif16b ENSRNOG00000004951 ENSRNOT00000036273 2 1 2 81 3 136767453 136767471 AGCTTGTCTATGACCGACC 59 136745765 136767410 TCTCAAATTCAAGTCCAGGGT 59 NA Rattus norvegicus 81 Camk2g ENSRNOG00000009783 ENSRNOT00000065644 2 1 2 80 15 3974339 3974360 AGCCTATTGAACAAGAAGTCAG 59 3981771 3983831 GTTGCTCTGTGGCATTAGG 59 NA Rattus norvegicus 81 Fgfr2 ENSRNOG00000016374 ENSRNOT00000065448 3 1 4 81 1 200671086 200692399 CACTTTAGAACCAGAAGATGCC 59 200671026 200671047 GTTCTCACTGACAAAGTCTTCG 60 NA Rattus norvegicus 81 Itgb3bp ENSRNOG00000009116 ENSRNOT00000090393 3 1 2 122 5 118491160 118491178 TCCCTAGTACCATGCTCCT 59 118487302 118489834 CATCCATGATGCTTTGGGAG 59 NA Rattus norvegicus 81 Nek1 ENSRNOG00000010418 ENSRNOT00000082712 2 1 2 80 16 32371753 32371771 TCTCTATATGGAGGCAGGC 58 32371268 32371711 CAGTCTTGCCAGATAAACCTC 59 NA Rattus norvegicus 81 Ppil6 ENSRNOG00000043186 ENSRNOT00000066634 1 1 2 80 20 46236742 46236765 AGTTCTTGGAATGGTCAAGG 58 46236806 46236826 TTTATCCAGATAGGGAGTTGC 57 NA Rattus norvegicus 81 Noa1 ENSRNOG00000002055 ENSRNOT00000090350 1 1 3 80 14 33117693 33121123 TACTGCTGGTTCCAATGGG 60 33121162 33121185 CTCCCTTTAACGTAATGTCTTCAG 60 NA Rattus norvegicus 81 Iars2 ENSRNOG00000002368 ENSRNOT00000057395 2 1 3 103 13 103253007 103253026 CGTACTGGTGCATATCAAGG 59 103249815 103251434 AGCAGGTAATAAGTTGTGCC 58 NA Rattus norvegicus 81 Tango6 ENSRNOG00000022524 ENSRNOT00000030768 1 1 2 80 19 39001123 39001141 GCCAGCAGTTTATCCAACC 59 39001183 39014550 GATTGTCACCTCATGAACCAC 59 NA Rattus norvegicus 81 Sun1 ENSRNOG00000001299 ENSRNOT00000089418,ENSRNOT00000047287 3 2 2 80 12 17500921 17501927 ACCACCTGATGCTAAGACTG 60 17500860 17500883 CTAAGAACATCTTCCAAACTGGAG 60 NA Rattus norvegicus 81 Fbln5 ENSRNOG00000050539 ENSRNOT00000007004,ENSRNOT00000084815 3 2 2 90 6 125656674 125656692 TTGCTACAATCTGCAAGGG 58 125652926 125656620 GCACATACAGCGGTTATCC 59 NA Rattus norvegicus 81 Slc11a1 ENSRNOG00000014956 ENSRNOT00000057472,ENSRNOT00000088679 3 2 5 81 9 81662728 81664256 AGGAAGCGTTCAACATCTG 58 81664299 81664319 ACTGACACTGTGTTATTGTCC 58 NA Rattus norvegicus 81 Tbata ENSRNOG00000000564 ENSRNOT00000000683 1 1 2 83 20 30791682 30794217 GACTCATATCCAAGATATCGCTG 59 30794260 30794278 AATGAGGGCTGAGTCAAGG 59 NA Rattus norvegicus 81 Htr2c ENSRNOG00000030877 ENSRNOT00000090922 1 1 2 80 X 118200506 118200526 CTAGCCATTGCTGATATGCTG 59 118265406 118289362 TAAAGGCCAGACATAATCTCCC 60 NA Rattus norvegicus 81 Cep290 ENSRNOG00000056458 ENSRNOT00000085684 3 1 2 82 7 40245831 40245850 GAGCATCTCTGGTACATCCC 60 40245890 40246140 GGTTTCATTCTGAGATCTAAGGAG 59 NA Rattus norvegicus 81 Abcc5 ENSRNOG00000029178 ENSRNOT00000048306 2 1 3 85 11 84399464 84399482 ATACAGAAGCGTCAGGGAC 59 84399532 84425170 ATTCCAACTGTGCTGTTCTC 59 NA Rattus norvegicus 81 Epha5 ENSRNOG00000002024 ENSRNOT00000043938,ENSRNOT00000067439 1 2 3 81 14 25791727 25791745 TCCACCTCTTGTGTCTGTG 59 25791790 25859219 CTGGAGAAGGAGTTGTGCA 60 NA Rattus norvegicus 81 AC127920.1 ENSRNOG00000057755 ENSRNOT00000078653,ENSRNOT00000088252 2 2 2 80 15 4002823 4002841 TTCTCGTGAACTGGATCGA 59 4002883 4003030 GTCATAAAGACACTGATCGGA 58 NA Rattus norvegicus 81 Epyc ENSRNOG00000004717 ENSRNOT00000006450,ENSRNOT00000072166 3 2 2 80 7 38919688 38924101 CCAATGAAGACTTTCCAACCT 59 38924143 38924161 TGGCATCAAGTTCATGGTC 58 NA Rattus norvegicus 81 Slc34a3 ENSRNOG00000010451 ENSRNOT00000014060 2 1 2 91 3 2452768 2453043 GTCTGAGAAATGCAGGGAC 58 2452695 2452716 GTCAGTATTCTTCAGCTGAGAG 58 NA Rattus norvegicus 81 Slc34a3 ENSRNOG00000010451 ENSRNOT00000014060 3 1 2 91 3 2452763 2453038 AGAAATGCAGGGACCTCTG 59 2452690 2452711 AGTTGGTCAGTATTCTTCAGCT 60 NA Rattus norvegicus 81 Foxn3 ENSRNOG00000004709 ENSRNOT00000083665 3 1 2 95 6 123290817 123290836 AGAGAAATGGAGCCCTTCTG 60 123211233 123221568 CTGGAGAAACTGCTTGTATCTC 59 NA Rattus norvegicus 81 Eprs ENSRNOG00000002393 ENSRNOT00000085214 2 1 2 81 13 103323475 103324763 GATGGATGGGATGACCCTC 59 103324808 103324826 TGAACTGCTTCAGTCCCTC 59 NA Rattus norvegicus 81 Pja2 ENSRNOG00000015528 ENSRNOT00000021258 2 1 2 82 9 112008510 112023485 CAAAGACGAAGACAGAGAACAG 59 112008449 112008467 TGCTGCTCTCATTGACCTC 60 NA Rattus norvegicus 81 Tmprss5 ENSRNOG00000008058 ENSRNOT00000086957 3 1 2 146 8 53417367 53420422 GCAGCAACCCATATCTTTCAG 60 53420527 53420548 CTGAAATATCCAAGACTCTGGC 59 NA Rattus norvegicus 81 Col13a1 ENSRNOG00000000552 ENSRNOT00000046537 1 1 2 112 20 31502140 31502158 GGATCCAGGGCTATCATGG 59 31488663 31492082 CTTCTCACCCTTCATCCCA 59 NA Rattus norvegicus 81 Snd1 ENSRNOG00000031173 ENSRNOT00000047698,ENSRNOT00000048252 1 2 2 80 4 55821822 55832683 TGTTGCCAAGGTAATGCAG 59 55832726 55832745 AGGTGGATGGTCTTGTAGTC 59 NA Rattus norvegicus 81 Snd1 ENSRNOG00000031173 ENSRNOT00000048252 1 1 2 81 4 55816087 55816105 CAGAATGCGAGGAACAAGC 60 55816151 55816171 TACTTGAGGTCCGGATGTG 59 NA Rattus norvegicus 81 Hm13 ENSRNOG00000007738 ENSRNOT00000087075 1 1 2 80 3 148181343 148185610 AGAGATGTTCAGTTATGAGGAGTC 60 148185649 148185667 GACGCCTCTGTTGATTCCT 60 NA Rattus norvegicus 81 Rp2 ENSRNOG00000025428 ENSRNOT00000081913 2 1 2 104 X 2116453 2116471 TTCTCTAAGAGGCGGAAGC 59 2105543 2116385 TTTGGATCAACGTTCTGCC 59 NA Rattus norvegicus 81 Dus1l ENSRNOG00000047905 ENSRNOT00000073956,ENSRNOT00000086042 3 2 2 80 10 109973988 109974007 GGCTTGTCCAAGAATAAGCT 58 109972709 109973946 TGCATATTTGGGTTTCAGGG 59 NA Rattus norvegicus 81 LOC299282 ENSRNOG00000010478 ENSRNOT00000082680,ENSRNOT00000084685,ENSRNOT00000077517,ENSRNOT00000014073 3 4 8 86 6 128078983 128079003 GGCATCAAAGAAGTCTTCTCC 59 128079051 128079994 CTTGTGGACCACCTGAGAG 60 NA Rattus norvegicus 81 Agap1 ENSRNOG00000019476 ENSRNOT00000065720 3 1 2 81 9 96905259 96905277 TCCTACTCAGTCTCCAGTG 57 96905322 96970468 TTTCTTCTTGCTCACTGCT 57 NA Rattus norvegicus 81 Acpt ENSRNOG00000021659 ENSRNOT00000079199,ENSRNOT00000032200 3 2 2 82 1 100229678 100229696 CCCTCGATACCATGAGCTG 60 100229538 100229632 TCAAGAAGTCTGTCCAGCC 59 NA Rattus norvegicus 81 Cdk5rap2 ENSRNOG00000005788 ENSRNOT00000007710 1 1 2 80 5 86406717 86406736 CTTCAGTCCCTCCAAATGGA 60 86403571 86406677 TTTGTTGACATCTTGCTGTAGC 60 NA Rattus norvegicus 81 Tinagl1 ENSRNOG00000013179 ENSRNOT00000080166,ENSRNOT00000018464 2 2 2 80 5 148384602 148384623 CCCAATAGTCATGTTGATTCCA 59 148384458 148384563 CATGATCTCCTTCTCATCGGA 59 NA Rattus norvegicus 81 Pi4kb ENSRNOG00000021024 ENSRNOT00000080966 2 1 2 88 2 196145615 196148411 GTTTCTCGAACAGCTTGGA 58 196148463 196148481 CTCAGAAGTTGGCTTCAGG 58 NA Rattus norvegicus 81 Acaca ENSRNOG00000034013 ENSRNOT00000088138 1 1 2 80 10 71557130 71557151 AAGATTGCATCGTCTATTGTGG 59 71557189 71558309 CCAACCCATTCTTAACTCACTG 59 NA Rattus norvegicus 81 Acaca ENSRNOG00000034013 ENSRNOT00000088138 3 1 2 80 10 71536648 71536666 CACCCGAAGACCTTAAAGC 59 71539042 71545961 TATTATTACTTGGCCCTGGGT 59 NA Rattus norvegicus 81 Arhgap44 ENSRNOG00000003603 ENSRNOT00000004829 2 1 2 81 10 51507919 51507937 TCAAGTCCACAGTCCACAG 59 51503019 51507878 CAAAGTGGACAAGATCTGTAGAC 59 NA Rattus norvegicus 81 Tspan9 ENSRNOG00000051620 ENSRNOT00000089199,ENSRNOT00000090725 2 2 2 80 4 160536060 160536078 ATCGTCCTGTTGATCATCC 57 160535755 160536016 ATTCTCGTTCACCTTGTCC 58 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000019265 2 3 9 80 9 81545177 81545196 AACACCATCAACCTGATCCA 59 81545233 81545747 TCGTGTATGAATATAGGCCTTAGAG 60 NA Rattus norvegicus 81 Ppm1h ENSRNOG00000004314 ENSRNOT00000005798 3 1 2 82 7 67017916 67017935 CGAACAGAAATTCCAAGCGA 59 66982507 67017871 GATGCCCTCAGACTCAGAG 59 NA Rattus norvegicus 81 Slc24a4 ENSRNOG00000006729 ENSRNOT00000089840,ENSRNOT00000008886 1 2 3 80 6 126103290 126103308 CCTACAGACCTGTTCTCCA 58 126103349 126105892 GTAGAACATATAGAGTGCACCA 58 NA Rattus norvegicus 81 C1qtnf7 ENSRNOG00000005094 ENSRNOT00000064495 1 1 2 80 14 72121698 72121716 TCATGGGAGAACCAAAGCA 59 72018129 72121654 ATCTTGGGCTCTTTCCTGG 59 NA InUTR Rattus norvegicus 81 Ilf2 ENSRNOG00000014154 ENSRNOT00000048214 1 1 2 80 2 189859734 189859752 GACCAACAGGCATCAAACC 60 189859793 189860277 CTATGCCAAGAAGACTTTGAGC 60 NA Rattus norvegicus 81 Dusp15 ENSRNOG00000008534 ENSRNOT00000072663 2 1 2 80 3 148422347 148422368 CTTTATCCACTCTTGTCGTCTC 59 148421248 148421875 CCTGCAAAGAAAGATCCCG 59 NA Rattus norvegicus 81 Mynn ENSRNOG00000027923 ENSRNOT00000010344 3 1 2 128 2 116403732 116403750 CTGACCTATCATGTCCGCA 59 116401752 116403643 GATAAATGGTCGTTCTCCTGTG 59 NA Rattus norvegicus 81 Kcnip1 ENSRNOG00000005365 ENSRNOT00000040737,ENSRNOT00000079031,ENSRNOT00000083090,ENSRNOT00000007187 1 4 4 80 10 18571857 18571875 GCACATACGCACATTACCT 58 18571042 18571813 GAGCAGTCACAAAGTCCTC 58 NA Rattus norvegicus 81 Kcnip1 ENSRNOG00000005365 ENSRNOT00000040737,ENSRNOT00000079031,ENSRNOT00000083090,ENSRNOT00000007187 3 4 4 80 10 18562620 18570962 CATAAACAAAGAGGAGATGATGGAC 60 18562564 18562584 TCTTTGAGCACAGGATAGGTG 60 NA Rattus norvegicus 81 Cngb1 ENSRNOG00000031773 ENSRNOT00000060351,ENSRNOT00000088645 2 2 3 81 19 10149365 10149667 GCCCTAGCCTTCAAGAGAC 60 10149711 10149730 CTGTTCACCTTGACAACAGC 60 NA Rattus norvegicus 81 Myl1 ENSRNOG00000013262 ENSRNOT00000018097 1 1 2 112 9 73943532 73947759 GATTGCCGAATTCAAGGAGG 59 73943439 73943457 CATTTGTGGGATTGGTGCC 60 NA Rattus norvegicus 81 Sema6d ENSRNOG00000004812 ENSRNOT00000090802 1 1 2 80 3 116952611 116954358 TACTGATACTATATCAGGTGTACGG 59 116954394 116954414 GTGATGAGGACATTCATGTGG 59 NA Rattus norvegicus 81 Rtkn2 ENSRNOG00000000636 ENSRNOT00000086250 2 1 2 80 20 21937102 21941626 TTTGATCTCAGCCACTGGA 59 21937040 21937058 GAACAAAGGTGGTTTCCGT 59 NA Rattus norvegicus 81 Rtkn2 ENSRNOG00000000636 ENSRNOT00000086250 3 1 2 80 20 21937050 21937070 GATTATGTCACCACGGAAACC 59 21935558 21937011 GGTGAATCAATGCTCATATCGT 59 NA Rattus norvegicus 81 Prpf3 ENSRNOG00000025629 ENSRNOT00000063866,ENSRNOT00000085971 2 2 2 80 2 197963040 197963058 AGCAACGAGACAAATCGAG 58 197962818 197962997 GAAGAAGGTGTCTTTGGCTG 59 NA Rattus norvegicus 81 Depdc5 ENSRNOG00000018144 ENSRNOT00000085788 1 1 2 80 14 83208896 83208915 ACTGTGACACAAGTATTCCG 58 83207388 83208854 GTCAAGAGTCACATCCTTGG 58 NA Rattus norvegicus 81 Slc35a1 ENSRNOG00000008908 ENSRNOT00000011969,ENSRNOT00000081150 1 2 2 80 5 50125103 50125543 CTGGTTTGTTATCTTCCTTGC 58 50125043 50125063 CCTTTCATGATGTTGTCTGTG 58 NA Rattus norvegicus 81 Plcd4 ENSRNOG00000016361 ENSRNOT00000041407,ENSRNOT00000022234 1 2 2 80 9 81834195 81835246 ACAATATGCCTTCCAGTCGT 60 81835289 81835307 ATGGTCTTCTGCTGTTCCC 60 NA Rattus norvegicus 81 Sphk1 ENSRNOG00000010626 ENSRNOT00000032163,ENSRNOT00000088457,ENSRNOT00000079080,ENSRNOT00000083593 3 4 4 96 10 105503087 105503354 GAACTACTATGCTGGGCAC 58 105503414 105503432 CAGATTCATGGGTGACAGC 59 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000020656 ENSRNOT00000091573 2 1 3 92 8 117769894 117769912 AAATCCAGGACCACTACCC 59 117769967 117773138 GACTCCACTTTACAACCTCG 58 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076089,ENSRNOT00000010015 2 4 5 97 10 70164875 70164893 CATTGGCCATGTGTCTCAG 59 70163985 70164814 CCTCTGAGTCAACGGACTG 60 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076089,ENSRNOT00000010015 3 4 5 118 10 70167431 70167450 AGGATCAGGAAACTCAGCAG 60 70163986 70164815 CTCTGAGTCAACGGACTGG 60 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076089,ENSRNOT00000010015 3 4 5 118 10 70167431 70167450 AGGATCAGGAAACTCAGCAG 60 70163986 70164815 CTCTGAGTCAACGGACTGG 60 NA Rattus norvegicus 81 Tmed4 ENSRNOG00000005016 ENSRNOT00000006802 1 1 2 82 14 86394989 86395007 CTATTTCCACATCGGCGAG 59 86394750 86394943 TTCGATAGTTGCCGATGAC 58 NA Rattus norvegicus 81 Adcy4 ENSRNOG00000020401 ENSRNOT00000067536 2 1 2 82 15 34456420 34456439 AGTATTACTGTCGCCTGGAC 59 34456333 34456379 GAGTACATTCTCCATTGTCTCAG 59 NA Rattus norvegicus 81 Gnas ENSRNOG00000047374 ENSRNOT00000071215 2 1 2 80 3 172433390 172433414 TTATGAACGTGCCATTTGAC 57 172433565 172433586 CTGAGGTTCTATGACTAGATGG 57 NA Rattus norvegicus 81 Man2a2 ENSRNOG00000012055 ENSRNOT00000078982 2 1 2 81 1 142145930 142148386 TCAGGAACTCAAAGGTCCA 58 142145867 142145887 GTGTTGAGGTACATGGAAGTC 59 NA Rattus norvegicus 81 Marveld3 ENSRNOG00000016291 ENSRNOT00000021866 1 1 2 80 19 41712690 41712711 TATTACCAGTCAGAAGCTGAGG 59 41712752 41724180 TATCTGCACCACACCTCTC 59 NA Rattus norvegicus 81 Tet1 ENSRNOG00000000277 ENSRNOT00000000302,ENSRNOT00000057939 1 2 2 80 20 27433394 27436551 ACAAGAAATCAGGTTCGCAC 59 27436590 27436612 CTGTAGATTCATCTTTCACTGGG 59 NA Rattus norvegicus 81 Dnmt3a ENSRNOG00000026649 ENSRNOT00000047210 1 1 2 99 6 28272614 28272632 CCAAGACTCACCTTCCAGG 60 28272695 28327934 TGGCTTTCTTCTCAGCCTC 60 NA Rattus norvegicus 81 Masp2 ENSRNOG00000011258 ENSRNOT00000016317 1 1 2 80 5 165427130 165427149 GAAGTGACCACCTACAAAGC 59 165427189 165427896 CACATATTTACCATTGCTGCTC 58 NA Rattus norvegicus 81 Atp9b ENSRNOG00000032039 ENSRNOT00000090265 3 1 2 81 18 77384143 77394662 GTATTCTCCTGCGAGAACG 58 77384080 77384099 GTCTGTCCCATAGGAGACAG 59 NA Rattus norvegicus 81 Ntn4 ENSRNOG00000005573 ENSRNOT00000007412,ENSRNOT00000084185 3 2 2 80 7 34636064 34636083 TGCACAATAAGAGTGAGCCA 60 34636123 34641550 ATTCACATTTACCTGAGTGTCG 59 NA Rattus norvegicus 81 LOC100909776 ENSRNOG00000026594 ENSRNOT00000036793 3 1 1 61 5 126092297 126092315 CAGAGAAGGAGGGCTACAG 59 126087257 126087276 CATGGTCTCCTCATAAGTGG 58 NA DesignNoJunction Rattus norvegicus 81 Nfatc3 ENSRNOG00000054264 ENSRNOT00000089783 3 1 2 84 19 38091350 38100646 GGATATCACTTTAGATGATGACCAG 59 38100686 38100706 ACTGTGATTAGGCCATTTCTC 58 NA Rattus norvegicus 81 Hoxc6 ENSRNOG00000016442 ENSRNOT00000022217 1 1 1 70 7 144624135 144624153 CGAATGAATTCGCACAGTG 58 144624912 144624930 TACCGAGAGTAGATCTGGC 58 NA DesignNoJunction Rattus norvegicus 81 Supv3l1 ENSRNOG00000000392 ENSRNOT00000000441,ENSRNOT00000080773 3 2 2 80 20 32059002 32060483 GCTCTTACAGTTTGCCAGG 59 32058940 32058958 AGAGGCCACTTGATGTACC 59 NA Rattus norvegicus 81 Exoc1 ENSRNOG00000002144 ENSRNOT00000090470 1 1 3 80 14 34135880 34142733 GGCGTGTTCATTAATGTGGA 59 34135819 34135840 GTGAAAGTTCTCCATCATGACC 59 NA Rattus norvegicus 81 Strbp ENSRNOG00000010150 ENSRNOT00000090576 3 1 3 110 3 21850597 21850617 CTATCCTCACAGCATGGCA 60 21850504 21850523 TTACAAAGCGCTTGTCATGG 60 NA Rattus norvegicus 81 Fabp4 ENSRNOG00000010805 ENSRNOT00000014701,ENSRNOT00000077311 3 2 2 80 2 93795276 93795888 AAAGTGAAGAGCATCATAACCC 59 93795927 93795947 CTTTATGGTGGTCGACTTTCC 59 NA Rattus norvegicus 81 Lepr ENSRNOG00000023664 ENSRNOT00000044131,ENSRNOT00000050597 1 2 2 80 5 120639706 120642143 ATGAGTAAAGTGAATGCTGTGC 60 120642184 120642202 TGACAGTGTCCAGGAAAGG 59 NA Rattus norvegicus 81 Vcl ENSRNOG00000010765 ENSRNOT00000085126 1 1 2 82 15 3459800 3461665 CAAGTGGTCTAGTAAGGGCA 59 3459737 3459755 TTACCAGCCGAGACATCTC 59 NA Rattus norvegicus 81 Arid4a ENSRNOG00000026239 ENSRNOT00000031595 1 1 2 117 6 93519022 93519042 TTCGTCAAACATGCCATACAG 59 93519121 93521142 AGATGAGCACGAGTTGGAC 60 NA Rattus norvegicus 81 Ppip5k2 ENSRNOG00000011613 ENSRNOT00000076107,ENSRNOT00000056439 2 2 3 120 9 111244241 111244259 CTTTGATTTGTTACGCGCC 58 111244342 111244704 CATCACGATATTGCCAAGGA 58 NA Rattus norvegicus 81 Fip1l1 ENSRNOG00000002275 ENSRNOT00000045050 2 1 2 90 14 36188572 36188590 GAAAGAAGCAGCACTTCCA 58 36174391 36188518 AGGTAATCTCCTGCTTGGT 58 NA Rattus norvegicus 81 Ube2d3 ENSRNOG00000013741 ENSRNOT00000066204 2 1 3 81 2 240627731 240642900 AGGAACTTAGTGATTTGGCC 58 240642943 240643058 GCTTGCCAATGAAACATGTC 59 NA Rattus norvegicus 81 Mcpt8 ENSRNOG00000049991 ENSRNOT00000080221,ENSRNOT00000027950,ENSRNOT00000072426 3 3 7 119 15 34646202 34647381 TCAACACTGAAGGAGGAGAG 59 34646102 34646121 GGAAACCACCACAGTAATGG 59 NA Rattus norvegicus 81 Pnpla8 ENSRNOG00000039091 ENSRNOT00000047296 2 1 2 80 6 64274498 64281428 GAATGATCTTCATCAGGATGGA 58 64281467 64281487 GGCCAGATACATTTACATTCG 57 NA Rattus norvegicus 81 Man1a1 ENSRNOG00000000800 ENSRNOT00000085465 1 1 3 81 20 35334402 35334421 ACTCATCTTCAAGGGAGCTG 60 35324720 35334364 CATTAGTATTTCCTTCAGTCACCAG 60 NA Rattus norvegicus 81 Hdhd2 ENSRNOG00000043171 ENSRNOT00000051857,ENSRNOT00000080784,ENSRNOT00000080660 3 3 3 81 18 73260153 73260176 CTTAATAGAGCAGAGACAAGTCAG 59 73260216 73263202 GTGGGTTTGAACTCCTGTG 59 NA Rattus norvegicus 81 Hdhd2 ENSRNOG00000043171 ENSRNOT00000051857 3 1 3 89 18 73226640 73226658 CGTTGTACTCCCTGATGCA 60 73226711 73235085 CCCAGCCAATGTTCTTGAG 59 NA Rattus norvegicus 81 Cep295 ENSRNOG00000010999 ENSRNOT00000029634 2 1 3 80 8 13871595 13871707 GAGAAGCTATCTACAAGTTCATCC 59 13871424 13871442 GCTCCTGTTTCTCTTTGCT 58 NA Rattus norvegicus 81 LOC102554393 ENSRNOG00000005780 ENSRNOT00000007640 2 1 2 80 3 5544084 5544954 GAGATCCAGGTGTACAGACG 60 5544995 5545015 CCGTTGGAAGTAGGTAAAGGT 60 NA Rattus norvegicus 81 Usp40 ENSRNOG00000018395 ENSRNOT00000070819 3 1 3 86 9 95105337 95105356 TTAGTGACCCATAGGTTCCC 59 95103978 95105288 GACTCCACCAACTTTCAGC 59 NA Rattus norvegicus 81 Usp40 ENSRNOG00000018395 ENSRNOT00000064171,ENSRNOT00000085325 3 2 3 80 9 95091554 95092575 ACTTCCTCTCAGCTGTTCC 59 95091492 95091515 TTCTTCTACTATGACTTCCAGCTC 60 NA Rattus norvegicus 81 Arhgef1 ENSRNOG00000020130 ENSRNOT00000065865,ENSRNOT00000080143 3 2 4 85 1 81796497 81796515 AAGACCCTTCCTGTCTCAG 58 81796564 81796901 TTCATGAAAGGCCTGTCTG 58 NA Rattus norvegicus 81 Arhgef1 ENSRNOG00000020130 ENSRNOT00000080840 1 1 4 154 1 81779929 81780025 CCATTTAGAGGTGAACCCAG 58 81783700 81783718 TTAGCATGTCAGCATGCAG 59 NA Rattus norvegicus 81 Arhgef1 ENSRNOG00000020130 ENSRNOT00000065865,ENSRNOT00000080143,ENSRNOT00000089592,ENSRNOT00000080840 3 4 4 80 1 81793822 81794026 CTGAGCGAGTTCAAGAACC 59 81794070 81794088 GTCTTTGGTTAGTCGCCAC 59 NA Rattus norvegicus 81 Dsc2 ENSRNOG00000039969 ENSRNOT00000082891 1 1 2 80 18 11829157 11829178 GTGGACAATTACAGATACACCT 58 11828592 11829118 GTGTCCTCTAATGGTTTCCTC 58 NA Rattus norvegicus 81 Dsc2 ENSRNOG00000039969 ENSRNOT00000082891 3 1 2 80 18 11829159 11829181 GAGGTGGACAATTACAGATACAC 59 11828595 11829121 TCCTCTAATGGTTTCCTCACC 59 NA Rattus norvegicus 81 Nav1 ENSRNOG00000008425 ENSRNOT00000011801 3 1 3 82 13 52291785 52294636 ACCAACATAGTTCATGGCTC 58 52290978 52290996 GATTGCATCCTCTCCTCAG 57 NA Rattus norvegicus 81 Clca5 ENSRNOG00000013334 ENSRNOT00000017824,ENSRNOT00000083535 1 2 3 80 2 250763783 250765227 TTGTCGGATATGACAGGAGG 59 250763722 250763740 GGAAATCCCACTGAAAGCG 59 NA Rattus norvegicus 81 Tmem248 ENSRNOG00000000893 ENSRNOT00000058725,ENSRNOT00000086175 3 2 2 85 12 29935041 29936720 ATTGTCCCAGATGACGACC 60 29934974 29934994 AACATCGTTATCACCATCACG 59 NA Rattus norvegicus 81 Wnt11 ENSRNOG00000015982 ENSRNOT00000021674 2 1 1 60 1 163807147 163807165 TACACAACAGTGAAGTGGG 57 163809700 163809720 CACTTACACTTCGTTTCCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Syt1 ENSRNOG00000006426 ENSRNOT00000088950,ENSRNOT00000048880 2 2 2 80 7 50173798 50218847 AAAGAAGAGCAAGAGAAACTGG 59 50173739 50173759 AATGACAACAGTCAGTTTGCC 60 NA Rattus norvegicus 81 Serpind1 ENSRNOG00000001865 ENSRNOT00000084973,ENSRNOT00000031819 1 2 2 80 11 87916345 87916365 GGAATGAAGACTCTTGAAGCA 58 87915050 87916303 CTCTCGGGTTCTGTTTGTC 58 NA Rattus norvegicus 81 Reck ENSRNOG00000014863 ENSRNOT00000084031 2 1 2 83 5 59412868 59412886 CTTGAGCATCGAGTCAGAG 58 59412932 59413643 TTATTGCAGGCCTCAATCTG 58 NA Rattus norvegicus 81 Rims2 ENSRNOG00000004201 ENSRNOT00000043079 3 1 4 80 7 78462382 78482264 TTCGAAGAAATATCGCTCAGG 58 78482306 78482324 CTTACATCACTGTCCGAGG 57 NA Rattus norvegicus 81 Gng7 ENSRNOG00000019857 ENSRNOT00000026893 1 1 1 100 7 11625403 11625421 TACTAACAACGTCGCCCAG 60 11626365 11626383 TCATCAGTTCTGACGAGGC 60 NA DesignNoJunction Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000004295 3 1 6 80 10 53743006 53743141 GGATGATCTACACCTACTCGG 59 53743181 53743201 CCACCTCTGCATTATACACTG 59 NA Rattus norvegicus 81 Klrb1b ENSRNOG00000007310 ENSRNOT00000009594,ENSRNOT00000085887,ENSRNOT00000009904 1 3 3 80 4 162017578 162017596 GTCTAGCTGACTGTGGTGG 60 161953931 162017537 TCAAGTTCCGTAGGAATCTCAG 60 NA Rattus norvegicus 81 Adgrd1 ENSRNOG00000023536 ENSRNOT00000073105 3 1 2 80 12 31233301 31238043 AACTGGAGATATCATGGAAGG 57 31233241 31233260 CCGTAGTAGAGAAACGTCAC 58 NA Rattus norvegicus 81 Slco6c1 ENSRNOG00000013792 ENSRNOT00000081815 2 1 4 80 9 104692944 104694147 TCTGGGCAAATCTCTTGGA 59 104692882 104692904 GGACTCAAATTCTTCATTCCTCC 60 NA Rattus norvegicus 81 Cacna1e ENSRNOG00000002863 ENSRNOT00000090544,ENSRNOT00000003869 1 2 3 80 13 71983309 71983327 CCAGAAACATGCACTGCAG 60 71979088 71983269 CTTCTGTCTCTTTCAATGGAAGG 60 NA Rattus norvegicus 81 Carm1 ENSRNOG00000031129 ENSRNOT00000041577 3 1 2 80 8 22620637 22621131 TGATTCCCTTAGGCTCCTC 58 22621175 22621193 TGGTGAACTGGTTGTTGAC 58 NA Rattus norvegicus 81 Spink14 ENSRNOG00000046686 ENSRNOT00000075498 2 1 1 61 1 229349181 229349199 CTTCATTCGATGCTCCTGG 58 229349871 229349889 ATCAGTCCATGTGTAGGCC 59 NA DesignNoJunction Rattus norvegicus 81 Smg8 ENSRNOG00000005769 ENSRNOT00000008107 1 1 1 60 10 74386488 74386509 CTGTGTACACAAATTTCACTCC 58 74384387 74384405 GTTCCTATCTGCCTCTGGT 59 NA DesignNoJunction Rattus norvegicus 81 Ncoa4 ENSRNOG00000019768 ENSRNOT00000066062,ENSRNOT00000026803 1 2 2 80 16 8316601 8316619 GCTCTTTGAAGCAGATGCA 59 8316661 8317146 TGCTCAGGAATTTGAATGGTC 59 NA Rattus norvegicus 81 Ddx59 ENSRNOG00000042451 ENSRNOT00000042846 2 1 2 80 13 53304201 53304219 TGAAGACAGTGCTTCTCGT 59 53304260 53309106 CTATGACAACCTTCACATGCTG 60 NA Rattus norvegicus 81 Ccdc51 ENSRNOG00000020688 ENSRNOT00000077228 1 1 2 84 8 117812407 117827472 AGTTTCAACTCTTGCGATGAC 59 117827516 117827536 TCTCCATACCAGTCTATGGGA 59 NA Rattus norvegicus 81 Abca14 ENSRNOG00000043296 ENSRNOT00000073255 1 1 3 156 1 189985053 189986398 AGCATCCTGAATACCAGCT 59 189986819 189986839 TCACTGTGTTGAAAGACTCTC 58 NA Rattus norvegicus 81 Abca14 ENSRNOG00000043296 ENSRNOT00000073255 3 1 3 157 1 189985052 189986397 GAGCATCCTGAATACCAGC 58 189986819 189986839 TCACTGTGTTGAAAGACTCTC 58 NA Rattus norvegicus 81 Col6a3 ENSRNOG00000019648 ENSRNOT00000026719,ENSRNOT00000087595 3 2 5 80 9 97981807 97987414 AAAGACATCACAGCACAAGAC 59 97981747 97981765 ATCGAAATTGGCCTTTCCG 59 NA Rattus norvegicus 81 Cd3e ENSRNOG00000016069 ENSRNOT00000047291 1 1 2 81 8 49300849 49306235 CCAGGAAGAGTATGAAGTCTCC 60 49300789 49300812 CCACTTTAAGTTGTCCTCATTCTC 60 NA Rattus norvegicus 81 LOC100912889 ENSRNOG00000048117 ENSRNOT00000049917 3 1 3 86 14 773161 773183 GAATAGTGAAGAGACTGATGGAG 58 768107 773120 GAGTAAGAGTGTTCAATAGGTTCC 59 NA Rattus norvegicus 81 Sfswap ENSRNOG00000000931 ENSRNOT00000077977 1 1 2 107 12 30808173 30808191 CAGCTGTCTGAAGAGGAGG 60 30807472 30808104 GTATTCTTCCTCTTGCCTTGC 59 NA Rattus norvegicus 81 Ccdc129 ENSRNOG00000012165 ENSRNOT00000045930 2 1 2 80 4 86127132 86127514 CTGGACTCTGAATTCTTTGTCTC 59 86139210 86139229 TCCTTGTTCATGCAAAGGAG 59 NA Rattus norvegicus 81 Zfp831 ENSRNOG00000024693 ENSRNOT00000033863 3 1 2 116 3 172722992 172734964 TGAGAGCAGGAGTTTCTGG 59 172800974 172800994 AGAGGGAATGTGTTTGTTACC 58 NA Rattus norvegicus 81 Tp63 ENSRNOG00000001924 ENSRNOT00000068116,ENSRNOT00000002636 2 2 5 82 11 78309227 78327256 GACTCAATTTAGTGAGCCACAG 59 78309166 78309184 TAGATGAGGAGCCGTTCTG 59 NA Rattus norvegicus 81 Bean1 ENSRNOG00000013301 ENSRNOT00000064781,ENSRNOT00000017774 3 2 2 88 19 949940 951687 TTCTCCACCAGGCTATGAG 59 949870 949888 CTGTCATCGAGTAGGGTGG 59 NA Rattus norvegicus 81 Wars ENSRNOG00000004359 ENSRNOT00000006128,ENSRNOT00000050350 2 2 3 84 6 132773943 132773961 CTGTGAAGTAGACGTGTCC 58 132772510 132773898 AGTGTAATCCTTTCTGATCTGC 58 NA Rattus norvegicus 81 Pusl1 ENSRNOG00000022354 ENSRNOT00000067704 1 1 2 85 5 173337574 173337592 TCCCTTGGGCAAGTATCAG 59 173336876 173337525 TTTCCCAGCCAAAGTTGTC 59 NA Rattus norvegicus 81 Robo2 ENSRNOG00000029598 ENSRNOT00000090497 3 1 3 81 11 11516607 11516626 GGAACTTACGTTTGTGTTGC 58 11213809 11516565 CTCGCAATAATGCTACTTCCA 59 NA Rattus norvegicus 81 AABR07065684.1 ENSRNOG00000056043 ENSRNOT00000071714 1 1 2 101 6 139293144 139293162 CAGCTTGGGTTTCCTTGTC 59 139293337 139293355 AGTTTCAGGGACCTTCCAG 59 NA DesignNoJunction Rattus norvegicus 81 Itgb4 ENSRNOG00000005580 ENSRNOT00000065339 1 1 2 96 10 104540029 104540132 AGAAGAAAGACTGCCTCCC 59 104540194 104540212 TATTTCCAGCAGAGCAGCA 59 NA Rattus norvegicus 81 Wdr86 ENSRNOG00000025735 ENSRNOT00000079770 2 1 2 84 4 6938816 6942261 GTGAACAGGATCCTAGTTGC 58 6942307 6942326 GTCCTTTATCCACAGTCCAC 58 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000082775,ENSRNOT00000087711,ENSRNOT00000068238,ENSRNOT00000064344,ENSRNOT00000044638,ENSRNOT00000007218 3 6 7 86 3 48276297 48278998 GGACACTACAGAGACGACC 59 48279047 48279066 AGCAGTGACTAGAAGGTTCC 59 NA Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000026350,ENSRNOT00000081017 3 2 6 81 1 41532721 41561428 CTCTTGGACAGGAATCAAGG 58 41561472 41561490 GGAATCGACTTGACGTAGC 58 NA Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000026350,ENSRNOT00000081017 2 2 6 80 1 41532722 41561429 TCTTGGACAGGAATCAAGGT 59 41561472 41561490 GGAATCGACTTGACGTAGC 58 NA Rattus norvegicus 81 Exoc2 ENSRNOG00000060266 ENSRNOT00000092101,ENSRNOT00000090706,ENSRNOT00000077110 3 3 4 82 17 34831306 34831324 GTCTCTGAAGAGCTGAGCC 60 34831369 34835976 CAGATTTCAAGTCTGGCCTG 59 NA Rattus norvegicus 81 Exoc2 ENSRNOG00000060266 ENSRNOT00000092101,ENSRNOT00000090706,ENSRNOT00000077110 1 3 4 80 17 34832492 34832510 GTCTCTGAAGAGCTGAGCC 60 34832554 34835974 GATTTCAAGTCTGGCCTGC 59 NA Rattus norvegicus 81 Eif2b1 ENSRNOG00000001039 ENSRNOT00000001373 3 1 2 109 12 37451443 37451727 AGTTTAAGTACAAGGCAGACAC 59 37451797 37451815 AAACAGCAGTGTGATGAGG 58 NA Rattus norvegicus 81 Ctnna3 ENSRNOG00000000373 ENSRNOT00000057950,ENSRNOT00000084660 1 2 2 80 20 25064982 25113502 TCATCGTGTCAGCTTTGGA 59 25064920 25064938 TCACTGTTTGCACTACAGC 58 NA Rattus norvegicus 81 Cyp4a2 ENSRNOG00000009741 ENSRNOT00000045571 1 1 2 81 5 134484618 134484636 AAGGGAGAGCATGGAAGAG 59 134477694 134477730 TAAGACAAACCTGCCTGGT 59 NA Rattus norvegicus 81 Tmem209 ENSRNOG00000028219 ENSRNOT00000032772,ENSRNOT00000091255 2 2 2 80 4 57805012 57805034 GTTTATCAGAGTGCTATCAACCC 59 57803191 57804973 ATTTCTGCCCTTTGGAAGAC 59 NA Rattus norvegicus 81 LOC500331 ENSRNOG00000030522 ENSRNOT00000090431,ENSRNOT00000049620,ENSRNOT00000043078 2 3 3 81 4 162166197 162166785 AGGAGGAGCTGAATTTCCT 58 162166830 162166848 GGGTCTGCTGATGATTCTC 58 NA Rattus norvegicus 81 Ehmt2 ENSRNOG00000030630 ENSRNOT00000081456,ENSRNOT00000047370 2 2 4 94 20 4583889 4583907 GAAATGGCGGAAAGACAGC 60 4583965 4584133 CACCATTCACTCCTCTGGG 60 NA Rattus norvegicus 81 Galk2 ENSRNOG00000009289 ENSRNOT00000083356,ENSRNOT00000012447,ENSRNOT00000079023 3 3 3 80 3 118152233 118175176 GAGTGAACATAATAGGTGAGCA 58 118175216 118175235 CTATTAGCATGTCCTGCTCC 58 NA Rattus norvegicus 81 LOC308990 ENSRNOG00000016978 ENSRNOT00000022765 1 1 1 60 1 198528661 198528680 CAAGATTGACCCAAGGTGAC 59 198529118 198529138 CAATTCGGCTCTTCTAATTGG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Tceb2 ENSRNOG00000004814 ENSRNOT00000087768,ENSRNOT00000006892 3 2 2 80 10 13166184 13166202 GAATGTGGCTTCACCAGTC 59 13163195 13166140 AAAGGTGTCATCTGCTCGA 59 NA Rattus norvegicus 81 Trerf1 ENSRNOG00000022598 ENSRNOT00000088713 1 1 2 102 9 15695793 15695811 CTCCATCTGCCTGAAGGAG 60 15694254 15695727 TCCTTCCTCCTGTTTGAGG 59 NA Rattus norvegicus 81 Ankmy2 ENSRNOG00000005623 ENSRNOT00000091488 2 1 2 80 6 55677883 55685479 GTTGAAATCGGTTCTGATCCC 59 55685521 55685539 TTCAACATCCACAAAGCCC 59 NA Rattus norvegicus 81 Adam33 ENSRNOG00000021242 ENSRNOT00000028854 2 1 2 80 3 123597649 123597669 CTCCCTGATACTCATCTGGAC 59 123597350 123597609 ATTGCAAACCATTCTAGGTCC 59 NA Rattus norvegicus 81 Ubr2 ENSRNOG00000015813 ENSRNOT00000081621 1 1 2 97 9 16071510 16071530 ACAGTGACATCATGAACTCTC 58 16072967 16072988 TCCTCTAACCCTTATCGCT 57 NA Rattus norvegicus 81 Usp28 ENSRNOG00000007325 ENSRNOT00000067420 3 1 2 90 8 53313870 53313890 CAATAACTGGAGGAGAGTGGA 59 53313940 53319674 TTCAGGCAACTGAATAACAGC 59 NA Rattus norvegicus 81 Usp28 ENSRNOG00000007325 ENSRNOT00000009724 2 1 2 83 8 53313934 53319657 TTCAGTGCTGTTATTCAGTCTC 59 53319701 53319719 AAGAATGTTCTGTGGCAGG 58 NA Rattus norvegicus 81 Decr2 ENSRNOG00000050424 ENSRNOT00000027593 1 1 3 80 10 15461981 15463368 TCACATCAGCAGGAATGTC 58 15461919 15461938 CTGCTCTGAAACCATAGCTC 59 NA Rattus norvegicus 81 Dennd1b ENSRNOG00000011063 ENSRNOT00000043907 1 1 3 80 13 56077120 56096843 GGAGATCAGGAAGTTCTGC 58 56098743 56098763 TCCAACTTGATTCTGAGACAC 58 NA Rattus norvegicus 81 LOC102550456 ENSRNOG00000024616 ENSRNOT00000059592 1 1 3 86 12 21756463 21756481 TCACCTGGACAGTGATGAC 59 21749285 21749641 GACTTCACCAAGTCCATGG 58 NA Rattus norvegicus 81 LOC102550456 ENSRNOG00000024616 ENSRNOT00000059592 3 1 3 165 12 21756542 21756560 TTCACAAGTCTCCAGACCC 59 21749285 21749641 GACTTCACCAAGTCCATGG 58 NA Rattus norvegicus 81 Nrp1 ENSRNOG00000010744 ENSRNOT00000014492,ENSRNOT00000080465 3 2 2 80 19 61441962 61449955 GCTGCAAGATAACAGATTACCC 60 61449994 61450014 ATGCTGTAATCTGGGAGTCTG 60 NA Rattus norvegicus 81 Ttbk1 ENSRNOG00000018416 ENSRNOT00000080104,ENSRNOT00000024824 2 2 2 80 9 16869174 16869193 TTCCGAGTTCCATCTCTTCC 59 16869236 16871955 ACCGACATGATCAACTGGT 59 NA Rattus norvegicus 81 Ybx3 ENSRNOG00000005480 ENSRNOT00000007427,ENSRNOT00000068185 3 2 2 80 4 165622665 165625304 TGTTTGTACACCAGACTGC 58 165622603 165622623 ACTCTACAGTTTCTCCATCCC 59 NA Rattus norvegicus 81 Kiss1r ENSRNOG00000011954 ENSRNOT00000016396,ENSRNOT00000079485 1 2 2 82 7 12607671 12608825 ACTACATCCAGCAGGTCTC 59 12607607 12607625 GAACACAGTCACGTACCAG 58 NA Rattus norvegicus 81 Cetn3 ENSRNOG00000048563 ENSRNOT00000089209 3 1 2 81 2 12111949 12111969 TGAGAATATGAGCGATGAGGA 59 12112011 12112798 CAGTGTAGCTTCATTCTCCC 58 NA Rattus norvegicus 81 P2rx7 ENSRNOG00000001296 ENSRNOT00000001746 1 1 2 80 12 39395844 39395863 GATCCAGAGCGTGAATTACG 59 39380521 39395803 CTCATCAAAGCAAAGCTAACG 58 NA Rattus norvegicus 81 Polr1c ENSRNOG00000019079 ENSRNOT00000025787 3 1 2 81 9 17120979 17120997 TCCACACCACTGACTTTCC 60 17121042 17122771 ACACGGAAGTTCTTCTCGA 59 NA Rattus norvegicus 81 Cdc14b ENSRNOG00000018999 ENSRNOT00000079742 3 1 2 81 17 1723453 1723471 ACAAGGAGACAGACTTCGG 59 1705042 1723408 GTCAAAGCCATGCAGAGTG 60 NA Rattus norvegicus 81 Reln ENSRNOG00000021441 ENSRNOT00000010521,ENSRNOT00000061858 2 2 2 80 4 9471610 9471628 CACCTGCCTACAACAAACC 59 9471670 9525407 TGCAGTAGCCATGAAATTCAC 59 NA Rattus norvegicus 81 Med12 ENSRNOG00000003848 ENSRNOT00000076226,ENSRNOT00000090192,ENSRNOT00000040334 1 3 3 80 X 71184405 71184423 CAACCGCTACAGCTTTGTC 60 71184464 71184658 GCGATGTCATTTACCCTATCAG 59 NA Rattus norvegicus 81 Med12 ENSRNOG00000003848 ENSRNOT00000040334 2 1 3 87 X 71193904 71193924 TATAAGACCTCTGTGTACCGG 59 71193973 71194161 ACATTCCCTGACTCTGCTG 59 NA Rattus norvegicus 81 Piwil4 ENSRNOG00000009043 ENSRNOT00000078117 1 1 2 92 8 13248031 13250741 ATTTCACAGCCACATGAGC 59 13247957 13247975 ATCGACGAAGTCCTGTCTG 59 NA Rattus norvegicus 81 F13b ENSRNOG00000012613 ENSRNOT00000080335 2 1 3 81 13 56607263 56607281 ATCCAGGGTTCAGATGCAC 60 56610493 56612913 CTACCTTCTCCTTCTCTTCCAC 60 NA Rattus norvegicus 81 Akr1d1 ENSRNOG00000013004 ENSRNOT00000017675 2 1 2 89 4 65132767 65132787 CATGACATCGATTGTCGCA 59 65134267 65134287 TCATCCTTTAACAAGGGTGGA 59 NA Rattus norvegicus 81 Adgrg1 ENSRNOG00000014963 ENSRNOT00000088048,ENSRNOT00000081223,ENSRNOT00000020921 3 3 3 80 19 10432512 10434234 TCTTCTCCTTCCATAATGCC 57 10432451 10432469 ACTGCAGTTCCTTCTTGAG 57 NA Rattus norvegicus 81 Cdc37 ENSRNOG00000033426 ENSRNOT00000079949 1 1 2 80 8 22161434 22161453 ATGCCAAGTATCACATGCAG 59 22155432 22161393 ATAATCCTTCCTCCACTCCAG 59 NA Rattus norvegicus 81 Reep2 ENSRNOG00000049629 ENSRNOT00000073564 3 1 2 86 18 27635008 27635029 GATGTACTGGCTAGTCTTCG 58 27639506 27639525 TTGAGCTCAAAGTAGAAGGG 57 NA Rattus norvegicus 81 Scarb1 ENSRNOG00000000981 ENSRNOT00000064276,ENSRNOT00000001299 2 2 3 81 12 36695272 36734421 GCAGGTGCTCAAGAATGTC 59 36734465 36734484 CAAGTAGAAGGGAACAGGGA 59 NA Rattus norvegicus 81 Txnrd2 ENSRNOG00000001890 ENSRNOT00000002593,ENSRNOT00000081972 3 2 2 80 11 86672526 86674249 CAGGAGCATATAGAGGTTTACC 58 86672467 86672485 GTAGCACTGTGATGCATCC 59 NA Rattus norvegicus 81 Anln ENSRNOG00000014343 ENSRNOT00000019601 2 1 2 80 8 23366867 23367994 GCAGAAGACTGAAGCAGTG 59 23366805 23366825 ATGTCGTTAATGACCTTGGAG 58 NA Rattus norvegicus 81 Zfp318 ENSRNOG00000018741 ENSRNOT00000073191,ENSRNOT00000025335 3 2 2 91 9 16975247 16975265 CTGTGTTAGCACAGCAGAG 59 16965478 16975192 CAGTCAGGTCATCCCTGTC 60 NA Rattus norvegicus 81 AABR07062219.2 ENSRNOG00000058775 ENSRNOT00000079429,ENSRNOT00000080017,ENSRNOT00000086461,ENSRNOT00000087529 3 4 4 80 4 165185215 165185235 GAATGTAAACAGACCTGCCAG 59 165176321 165185173 TTGCTGAAGGAACTTCCGT 60 NA Rattus norvegicus 81 Smco1 ENSRNOG00000024960 ENSRNOT00000029572 1 1 1 60 11 71757640 71757658 ACCACAACCCTGATATCCT 58 71756189 71756207 GAGCTTGGAGCTTGTTGTC 59 NA DesignNoJunction Rattus norvegicus 81 Sh3glb1 ENSRNOG00000012957 ENSRNOT00000084337,ENSRNOT00000017770 1 2 2 80 2 250733891 250736669 AGCCAAATCCAAATGCCAG 59 250733829 250733850 CTGGGTTGTTTATACGACTTGG 59 NA Rattus norvegicus 81 Hsp90ab1 ENSRNOG00000019834 ENSRNOT00000086986,ENSRNOT00000026920 1 2 2 80 9 17821055 17821074 TCAAATTGTATGTCCGTCGT 58 17821117 17821274 CACCACGGATGAAGTTGAG 59 NA Rattus norvegicus 81 Fam193b ENSRNOG00000039807 ENSRNOT00000089990,ENSRNOT00000017349 3 2 2 80 17 9625118 9626020 CTTCAAGAGGTTCTGTTTGGA 58 9626062 9626080 TTCTTGAGGCTGAAGTTGG 58 NA Rattus norvegicus 81 Dopey2 ENSRNOG00000051204 ENSRNOT00000076259 1 1 2 103 11 33978743 33978761 TGTAGAGCTGTTCTACCGC 59 33978828 33980187 TCCACCTTGTTCCCTTGTC 60 NA Rattus norvegicus 81 Spats1 ENSRNOG00000019963 ENSRNOT00000045763 1 1 2 145 9 17931449 17931467 CCACTTCCACAAATTCCCA 58 17934690 17946769 GTTCGATTAGCAGTGGAGAG 58 NA Rattus norvegicus 81 Spats1 ENSRNOG00000019963 ENSRNOT00000045763 2 1 2 146 9 17931449 17931467 CCACTTCCACAAATTCCCA 58 17934692 17946770 TGTTCGATTAGCAGTGGAG 57 NA Rattus norvegicus 81 Unc13b ENSRNOG00000008237 ENSRNOT00000043216 1 1 4 80 5 58554267 58557715 GATTTCATGTTTGAGATCAGCC 58 58557755 58557774 CATTGTGTCCCATATCAGCC 59 NA Rattus norvegicus 81 RGD1311558 ENSRNOG00000018350 ENSRNOT00000085778,ENSRNOT00000064463 3 2 2 80 1 280146534 280150070 AGATAGCAGTAGTCCTACCG 58 280146473 280146493 GTTACACTGGATACAGAACCC 58 NA Rattus norvegicus 81 Ptprm ENSRNOG00000011700 ENSRNOT00000091316 3 1 2 82 9 114990103 114994606 CTTAGTGCCAATCAATGATGAG 58 114990042 114990061 CCCGCTTCTTGTAAGTATGG 59 NA Rattus norvegicus 81 Ldlrad4 ENSRNOG00000016879 ENSRNOT00000022717,ENSRNOT00000083414 2 2 2 121 18 64015931 64015949 CACGTTCCTTCATCAACCG 59 64033404 64040276 ACACATGATCTCTGAAGCCC 60 NA Rattus norvegicus 81 Fbxo41 ENSRNOG00000033202 ENSRNOT00000043201 2 1 2 114 4 117264330 117267243 GTATCTCAGTGTGGGAGGG 59 117264234 117264252 CTGAAATGTGCAGAAGGGC 60 NA Rattus norvegicus 81 Ccdc159 ENSRNOG00000011799 ENSRNOT00000088255,ENSRNOT00000049993 3 2 2 80 8 22944405 22944425 CGAGATCTCAGAGAATCTCCT 58 22944464 22944829 TTCATCTTGGTAAGAACCTTGC 59 NA Rattus norvegicus 81 Ccdc159 ENSRNOG00000011799 ENSRNOT00000088255 2 1 2 80 8 22940202 22941927 CAGCATAGTCAAGAAATCCCTG 59 22942333 22942353 TTCTGAGAGTCAGGAATCAGC 60 NA Rattus norvegicus 81 Agr3 ENSRNOG00000004994 ENSRNOT00000006652,ENSRNOT00000091682 1 2 2 80 6 55423176 55423199 GGCTGATATAACTGGAAGATACTC 59 55423235 55423761 TTCATGTTGTCTATCAGCATGG 59 NA Rattus norvegicus 81 Pdlim3 ENSRNOG00000012658 ENSRNOT00000017054 2 1 3 94 16 49562101 49562119 GAAACTCGCTTATGGTCCC 58 49553510 49562043 AAGTAGTTCACATCCTGCG 58 NA Rattus norvegicus 81 Taf15 ENSRNOG00000058393 ENSRNOT00000091122 1 1 2 80 10 70719634 70719655 AGGAATTCCTGTAATCAGTGCA 60 70719690 70721587 GATCATTTCTGTAGTCATTTCTCCC 60 NA Rattus norvegicus 81 Acnat2 ENSRNOG00000051912 ENSRNOT00000089232,ENSRNOT00000078547 1 2 2 127 5 64673615 64673633 GTCAGAATTCCACCCAAGG 58 64672343 64673524 AAAGGACCTTTCCCTGGAG 59 NA Rattus norvegicus 81 Gsta4 ENSRNOG00000030449 ENSRNOT00000090146,ENSRNOT00000012348 3 2 2 87 8 85513344 85513365 AGACATACAGCTACTAGAAGCC 59 85513412 85518614 CTTAAATGCCTGCAGCAGAG 60 NA Rattus norvegicus 81 Morc3 ENSRNOG00000026236 ENSRNOT00000076473,ENSRNOT00000076354 2 2 3 80 11 34067853 34070690 ATTCCTTAAGGGCTTACTGC 58 34070732 34070751 GTGTCTTCACTTTCTGTCCA 58 NA InUTR Rattus norvegicus 81 Ttc13 ENSRNOG00000018884 ENSRNOT00000079783 2 1 2 80 19 57455886 57458322 AGCGAGCTGAAATTCTGTC 58 57455824 57455843 AGGGCTGAAGTTGAATAGCT 59 NA Rattus norvegicus 81 Prkd1 ENSRNOG00000004165 ENSRNOT00000068077 1 1 2 83 6 71349048 71349066 CTCCTTCAGGACTCCTCTG 59 71180531 71349001 TTCAGGGAACTTCTGGTCC 59 NA Rattus norvegicus 81 Cyp27b1 ENSRNOG00000046214 ENSRNOT00000072176,ENSRNOT00000084933 3 2 2 80 7 70335243 70335864 CTACATGAACTGCAGGTGC 59 70335907 70335926 ATAAACTGTGCGAAGTGTCC 59 NA Rattus norvegicus 81 Ly49i5 ENSRNOG00000051661 ENSRNOT00000089484,ENSRNOT00000080133 2 2 3 80 4 164300936 164300956 CATGGATGTAAACAGACCTGC 59 164146103 164300897 CTGTAGGAACTTCAGTTCATCC 59 NA Rattus norvegicus 81 Eci3 ENSRNOG00000029549 ENSRNOT00000080929,ENSRNOT00000048923 3 2 3 83 17 30623119 30625418 TTTCACAGGAGTTGGTGAC 58 30625464 30625483 ACCTTGTCCTGTATTTCACC 58 NA Rattus norvegicus 81 Lnp ENSRNOG00000001593 ENSRNOT00000068018,ENSRNOT00000083045 2 2 2 80 3 61441745 61441763 GCTCAAGTTCAACTGGTCC 59 61440229 61441703 GAGGTATTGTTCCTCCTTCAG 58 NA Rattus norvegicus 81 LOC100911515 ENSRNOG00000050669 ENSRNOT00000071439 1 1 2 95 9 20216285 20216303 AAGTACACGAGAAGCTCCG 60 20216362 20216504 CTCCAGTCACAGAACCTCC 59 NA Rattus norvegicus 81 Alox5 ENSRNOG00000012972 ENSRNOT00000082907 3 1 2 105 4 148399418 148399436 ATTCGATTCCGCAAGAACC 59 148399330 148399349 CTGTTTGGAACCTGTCTGG 58 NA Rattus norvegicus 81 Dennd2c ENSRNOG00000018716 ENSRNOT00000081050,ENSRNOT00000025365 1 2 2 80 2 205648805 205652617 CTTCCCATTGAAGAGGTGC 59 205653515 205653534 CATGATCTCATCCTCGTCAG 58 NA Rattus norvegicus 81 Crot ENSRNOG00000006779 ENSRNOT00000067462,ENSRNOT00000091799 1 2 3 81 4 22111748 22111766 ACGAATTCAGGGAGTCGTG 60 22111810 22115360 CACCACAAACCTGTCATCTC 59 NA Rattus norvegicus 81 Ppp2r2c ENSRNOG00000058202 ENSRNOT00000091927 3 1 2 80 14 78682838 78684860 AAGAACAAAGGTCTCAGGTC 58 78682777 78682795 ACTTGTCGAAGATGCAGTC 58 NA Rattus norvegicus 81 Cadm2 ENSRNOG00000030840 ENSRNOT00000046370 2 1 2 80 11 4261693 4261711 ATGGCACTTATCGATGCGA 60 4177350 4261652 AATTGGGATCGTGTACAATGAG 59 NA Rattus norvegicus 81 Adgrl2 ENSRNOG00000032660 ENSRNOT00000040566 3 1 5 108 2 258803598 258805537 AACATTAAGTCTTGGGTGCTC 59 258803510 258803528 GATAAGCCATGACAACGGT 58 NA Rattus norvegicus 81 Caps2 ENSRNOG00000026600 ENSRNOT00000087341,ENSRNOT00000039141 3 2 2 84 7 54912820 54916061 GATTTCAGGGCATTCAACAG 58 54916108 54916126 AACTTCATCAGGCTTGCTG 59 NA Rattus norvegicus 81 Usp25 ENSRNOG00000001573 ENSRNOT00000002150,ENSRNOT00000084928 2 2 2 80 11 15487936 15487957 AATATGTTGATCCATCCAGAGC 58 15487998 15491089 CACTCACATCTTGCTGCTG 59 NA Rattus norvegicus 81 Tbc1d14 ENSRNOG00000006400 ENSRNOT00000085534,ENSRNOT00000058414,ENSRNOT00000077846,ENSRNOT00000082704 3 4 4 80 14 79421772 79421794 CCAGTCTGGAGCTTATTAAACTG 59 79421833 79425701 CATGATATGGACCACCTTGC 59 NA Rattus norvegicus 81 Hbb-b1 ENSRNOG00000047098 ENSRNOT00000087661,ENSRNOT00000019913,ENSRNOT00000089102 2 3 3 139 1 168946041 168965311 GAGAACTTCAGGCTCCTGG 60 168965413 168965432 TAGTGGTACTTGTGAGCCAG 59 NA Rattus norvegicus 81 Kcnip4 ENSRNOG00000032350 ENSRNOT00000049743,ENSRNOT00000079658 2 2 2 80 14 66742820 66744688 ACTAAAGAGGAAATGCTGGAC 58 66744730 66744748 ATCTTCCTTGAGGACAGGG 58 NA Rattus norvegicus 81 Fbxo30 ENSRNOG00000014852 ENSRNOT00000019918 1 1 1 60 1 5381536 5381557 ATCCAGAAGGAAATTCATCCTG 58 5387064 5387082 AATGCAGTACTGAATCGCC 58 NA DesignNoJunction Rattus norvegicus 81 Vcan ENSRNOG00000029212 ENSRNOT00000067456 3 1 4 81 2 18522665 18544072 AACAAGACAGGACCTGATCTC 60 18522604 18522625 ACACATAGGAAGTCTCAGTAGG 59 NA Rattus norvegicus 81 Atp6v0a2 ENSRNOG00000052704 ENSRNOT00000087698 3 1 3 80 12 37398463 37402401 TCTGTATGTTAGAATCCTGCCT 59 37398404 37398422 CAATGAACGGCAGGAATCG 60 NA Rattus norvegicus 81 Pcdh10 ENSRNOG00000031974 ENSRNOT00000066542 2 1 2 80 2 136994062 136994267 CTCCCTTCTACCTTCACCC 59 136994310 136994329 ACATACACCTGGTACACTGG 59 NA Rattus norvegicus 81 Adamts20 ENSRNOG00000033397 ENSRNOT00000088223 1 1 3 83 7 135515979 135522965 GAGTCTGACTGGGAATGGG 60 135515914 135515933 CAGTTGGTGGTAGTTCACAC 59 NA Rattus norvegicus 81 Bckdk ENSRNOG00000019485 ENSRNOT00000026466 2 1 2 80 1 199352976 199353001 GTAGTCTTCCTTTCATCATTGC 58 199353284 199353303 GAAGTCTGTCAACTTCTGGA 57 NA Rattus norvegicus 81 Gne ENSRNOG00000014365 ENSRNOT00000019532,ENSRNOT00000090490 1 2 2 80 5 59533404 59533423 CCCTTCCTATGACAAACTGC 59 59528969 59533363 TTTACATCATCACCTAGCCAC 58 NA Rattus norvegicus 81 Plekha1 ENSRNOG00000020497 ENSRNOT00000078244 3 1 2 126 1 201477179 201478413 ATACAGAGGAGCATTCCAGC 60 201478499 201478520 ATGGTATAGCTTGAGACCAGAG 59 NA Rattus norvegicus 81 Prpg1 ENSRNOG00000010449 ENSRNOT00000079259,ENSRNOT00000077496,ENSRNOT00000013887 2 3 3 80 4 165986751 165988390 ATGGCTCAGATGAAGAGGTC 59 165985857 165985876 GACCATGTTTCTGGTTCTGC 60 NA Rattus norvegicus 81 Il2rb ENSRNOG00000048636 ENSRNOT00000075678 3 1 2 93 7 119702377 119702397 ATGTCTACCAATAGCTCTGGG 59 119702301 119702321 TTAGAGTCAGGACAGGCCT 60 NA Rattus norvegicus 81 Nploc4 ENSRNOG00000036698 ENSRNOT00000054973 1 1 2 81 10 109604598 109609943 CCGAGAGGATCATAATCCGT 59 109604536 109604554 AATGTTGCGGCTGTTTCTC 60 NA Rattus norvegicus 81 Sox6 ENSRNOG00000020514 ENSRNOT00000079072 3 1 2 80 1 185863256 185863274 TGAAGTTCTGGCTGATGTG 58 185863316 185878840 TGCTTGGAAGACATTCTTACG 59 NA Rattus norvegicus 81 Gsta3 ENSRNOG00000056847 ENSRNOT00000077372,ENSRNOT00000088416 3 2 2 80 9 27409666 27412165 TATGAGAAGGTGTTGAAGAGC 58 27412206 27412225 TTCAACCAGGGAAACATCAG 58 NA Rattus norvegicus 81 Ikzf2 ENSRNOG00000027430 ENSRNOT00000057849,ENSRNOT00000087779 2 2 2 80 9 76766287 76767143 ATGGCTACATAACGTGTGAC 58 76766226 76766244 GTGTGCTTGAAGTGAGGTC 59 NA Rattus norvegicus 81 Kif5c ENSRNOG00000004680 ENSRNOT00000006341 2 1 2 81 3 35173750 35175386 AAACAGAAGTCCCTTTCTTGC 59 35175429 35175447 CCCTCATCGATCACATCCA 59 NA Rattus norvegicus 81 Mta3 ENSRNOG00000004685 ENSRNOT00000061921 1 1 2 80 6 7017279 7031683 TCTAGATGCCTCCAAGATTCG 60 7031724 7031743 TCTAGTTGCAGGCTTCTGAG 60 NA Rattus norvegicus 81 AABR07067267.1 ENSRNOG00000011124 ENSRNOT00000014788 3 1 1 64 9 37057153 37057171 GTGCTTCTCGTTTCAGTGC 60 37057201 37057219 CTTGGGATAGTGCTGAGGT 59 NA DesignNoJunction Rattus norvegicus 81 Dydc2 ENSRNOG00000039591 ENSRNOT00000079241 1 1 2 115 16 18640873 18645733 TGGTTATTCTAAGAAAGGTCCC 58 18640779 18640797 TATTGGGTCATTTGGCTGC 59 NA InUTR Rattus norvegicus 81 Adck2 ENSRNOG00000010005 ENSRNOT00000013277,ENSRNOT00000082241 3 2 2 88 4 67370719 67370737 AAGAACACCCTCACACTGG 60 67371888 67372037 TCCAGCTTCACCTTATGGG 59 NA Rattus norvegicus 81 Naca ENSRNOG00000002632 ENSRNOT00000003550,ENSRNOT00000085092,ENSRNOT00000075681 3 3 3 80 7 2470143 2470293 GAAGAGGAGGTTGATGAAACG 59 2470333 2470353 CTTTGCTCTTGACACATTTGC 59 NA Rattus norvegicus 81 Wbp11 ENSRNOG00000005505 ENSRNOT00000082235,ENSRNOT00000007402 3 2 2 88 4 170157953 170160918 AAGAAGTCAGGTCTGAGCG 59 170157883 170157901 TGAAGAGGAGTCAGCTCCT 60 NA Rattus norvegicus 81 Ap3b1 ENSRNOG00000010624 ENSRNOT00000066302 2 1 2 80 2 24224273 24224804 GTTCTTCAAGAAAGGTTTGCAG 59 24224844 24224863 GGAACCTTCCTTCAGTTCCA 60 NA Rattus norvegicus 81 Rbms1 ENSRNOG00000008482 ENSRNOT00000011682 1 1 2 190 3 46809632 46812792 TGTATCTGCCTACCAGGTG 59 46806050 46807144 TTGCAGGCATGTATGTTCC 59 NA Rattus norvegicus 81 Slc21a4 ENSRNOG00000010388 ENSRNOT00000000026 3 1 5 81 4 176279634 176279654 AAAGGCCAAGGAAGAAACG 59 176271189 176271208 TGAACAGCATGTAAATCGGG 59 NA Rattus norvegicus 81 Synj1 ENSRNOG00000002051 ENSRNOT00000052033 1 1 3 85 11 31147286 31147304 CATGTGGTCTGTGAATGGC 59 31144992 31147237 TTAACTTTCCAGCCTTGGC 58 NA Rattus norvegicus 81 Gsn ENSRNOG00000018991 ENSRNOT00000078939,ENSRNOT00000025857 3 2 2 80 3 14505745 14505764 AGGACAAGAAGATGGATGCT 59 14505805 14506021 GAACCTCTTCGATCACAAAGC 60 NA Rattus norvegicus 81 Postn ENSRNOG00000012660 ENSRNOT00000084527 1 1 2 80 2 143674640 143680505 CCCATGACTGTCTATAGACCT 58 143680544 143680565 TTCACCTTCTTTAATCAGCCTG 59 NA Rattus norvegicus 81 Postn ENSRNOG00000012660 ENSRNOT00000017453 3 1 2 83 2 143677506 143677526 TATAACCAAACTCGTGGAACC 58 143677571 143680513 GTCATTGCAGGTCCTTCTG 59 NA Rattus norvegicus 81 LOC100911993 ENSRNOG00000013602 ENSRNOT00000031855 1 1 2 80 5 155966638 155968391 CAATGAAGGGCAGTGATGG 59 155968434 155968453 CATCTAGTTGCTCAAGAGCC 59 NA Rattus norvegicus 81 Oplah ENSRNOG00000011781 ENSRNOT00000080724,ENSRNOT00000077314,ENSRNOT00000016424 1 3 3 80 7 117362795 117362813 TACCTTACTCCCACCATCC 58 117362652 117362754 GAGAACTTGCACATTCTTTAGC 58 NA Rattus norvegicus 81 Cand2 ENSRNOG00000010473 ENSRNOT00000014217 3 1 3 190 4 147686602 147692069 AAAGACTTCAGGTTCATGGC 59 147692772 147692790 TGGTACTCCTTCACCTTGC 59 NA Rattus norvegicus 81 Chd2 ENSRNOG00000012716 ENSRNOT00000090149 2 1 2 82 1 134832408 134833698 AAAGAAAGGAGCCACTGGA 59 134832344 134832362 TCTCCGTGTCAAAGTCACC 60 NA Rattus norvegicus 81 Dtx3 ENSRNOG00000005129 ENSRNOT00000090057,ENSRNOT00000006815 1 2 2 102 7 70479897 70480270 GGATCAAATGTCGTTCGTCC 59 70479814 70479832 CTCCTTGCTCAGGAAGTCC 60 NA InUTR Rattus norvegicus 81 LOC100911119 ENSRNOG00000032769 ENSRNOT00000046355,ENSRNOT00000081843 1 2 2 136 3 143807136 143807154 CTGTCCAAGGGATCACTGG 60 143804040 143804060 GCATTGGTCATCTTGTAGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Ackr3 ENSRNOG00000019622 ENSRNOT00000026558 2 1 1 80 9 97355952 97355970 CAGGAAGGCAAATCACAGC 60 97365599 97365618 GTCAAACAGATGCACATCCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rab23 ENSRNOG00000012629 ENSRNOT00000090385,ENSRNOT00000016933 2 2 2 81 9 38480069 38490828 CTACTATCGAGGAGCCCAG 59 38480006 38480024 TCTCCAGCTGGAAATTGCT 59 NA Rattus norvegicus 81 Lonp2 ENSRNOG00000015162 ENSRNOT00000048345 3 1 3 80 19 21489621 21491425 GGAATGCATGTACTGTTGAGAG 60 21489562 21489581 CAGTTGAGTCTTTGCTCTCC 59 NA Rattus norvegicus 81 Tnfsf13 ENSRNOG00000014171 ENSRNOT00000090762,ENSRNOT00000056903 3 2 2 80 10 56289069 56289087 AGTACTCACCCAGAAGCAC 59 56288722 56288890 ATGTCAGAGTCCTTGGAGG 58 NA Rattus norvegicus 81 Ehmt1 ENSRNOG00000007242 ENSRNOT00000086843 3 1 2 80 3 2032370 2032388 CAGAGGAGGAACAGGAGTC 59 2030849 2032331 TACTAGATTCAGAACTCAGGTCAG 59 NA Rattus norvegicus 81 Pbx1 ENSRNOG00000004693 ENSRNOT00000043004,ENSRNOT00000027996 3 2 2 82 13 86450801 86450822 GATTACAGAGCCAAACTCTCAC 59 86444914 86450759 GTGAATTCATTGCATGCCTG 59 NA Rattus norvegicus 81 Slc16a7 ENSRNOG00000007839 ENSRNOT00000058036,ENSRNOT00000078014,ENSRNOT00000077670 2 3 3 80 7 68512166 68512184 TTCAAGACCACCTCCAGTC 59 68453071 68512122 ACTACTGATGGGACCTCCT 59 NA Rattus norvegicus 81 Poln ENSRNOG00000027929 ENSRNOT00000058068 3 1 3 80 14 81948657 81951872 TCTGGAATATAGACAGGGCTC 59 81951914 81951932 GGATGCTTGGCTGAAAGTC 59 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000082605,ENSRNOT00000080617,ENSRNOT00000082494,ENSRNOT00000087775,ENSRNOT00000014230,ENSRNOT00000083233 2 8 10 80 10 87127518 87128305 TACAGCAGAAAGGTCTGGG 59 87127456 87127474 GCCACCAATAATCTTGCCA 59 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000014230,ENSRNOT00000083233 2 4 10 81 10 87118088 87120489 CGATGGAGACAGAGGAGAC 59 87118025 87118043 TCCTCAGGAGTAGATGTGC 58 NA Rattus norvegicus 81 Cacna1c ENSRNOG00000007090 ENSRNOT00000041571 1 1 3 80 4 150719816 150719837 TTCTTCATTCTGCTCAGTAGCA 60 150718429 150719775 GCCTAGGATGTGGTTCCTG 60 NA Rattus norvegicus 81 Thumpd2 ENSRNOG00000008291 ENSRNOT00000084499 1 1 3 137 6 3767585 3782240 CAGACTTAGAGGCAGGAGC 60 3767064 3767082 CACATGCGCCAAGTAACTG 60 NA Rattus norvegicus 81 Acsbg1 ENSRNOG00000011381 ENSRNOT00000088208 1 1 2 82 8 59223430 59226091 AGGACCGTGTTCTTAAGCA 59 59223366 59223384 CCTTGCTGGTACTTCAGGT 59 NA Rattus norvegicus 81 Prim2 ENSRNOG00000012486 ENSRNOT00000016828 2 1 2 81 9 38734430 38744492 GAGATGACGCACAATGTGG 59 38744537 38744555 TTAGGATTCGCTGGCTCTC 59 NA Rattus norvegicus 81 RGD1563692 ENSRNOG00000023557 ENSRNOT00000087584,ENSRNOT00000038563 1 2 2 80 9 100298056 100298972 TTTCTGCTAGATAAGTTCCAGG 58 100297997 100298017 GGTCTTCTGGAAGATGTTCTG 59 NA Rattus norvegicus 81 Arid5a ENSRNOG00000015382 ENSRNOT00000089673,ENSRNOT00000067688 1 2 2 60 9 42882403 42882421 GAGAAGCTGAAGAAGGCCA 60 42882444 42882807 TTTCTGATGTGGTCTGGTCC 60 NA DesignRelaxed Rattus norvegicus 81 Ube3d ENSRNOG00000010802 ENSRNOT00000014600 3 1 2 85 8 94007927 94007947 GCTGCTGTTGATACTATCGAG 59 93950379 94007880 AATGAGAGCACCAAAGCTG 59 NA Rattus norvegicus 81 Xpr1 ENSRNOG00000000042 ENSRNOT00000000049 1 1 2 80 13 73027913 73056641 AGCAGTACATCCAGTATGAGG 59 72984028 73027874 CATCTGTAACTTCCACAGAAGG 59 NA Rattus norvegicus 81 Tmco1 ENSRNOG00000003928 ENSRNOT00000082991,ENSRNOT00000005277 1 2 2 80 13 85476280 85476299 GGATGAAATCCATGTTTGCG 58 85476339 85481540 CCACTCTACCATCAAATATGGA 58 NA Rattus norvegicus 81 Adgra3 ENSRNOG00000004279 ENSRNOT00000005894 2 1 2 80 14 64739602 64739623 GTCATATTCAGACCAAACGTGG 60 64739663 64739683 GGTGGACAGTATTGGGAGAG 60 NA Rattus norvegicus 81 Ctbp1 ENSRNOG00000005428 ENSRNOT00000057929 2 1 2 157 14 82787877 82787895 AACAAGGACCACCTGACAG 60 82788439 82788537 CAGGCTTGACAGTCTTCCA 60 NA Rattus norvegicus 81 Eci1 ENSRNOG00000008843 ENSRNOT00000011784 3 1 2 81 10 13808329 13809265 GATATCTGCCATCAATGGCG 59 13809309 13809327 GTTGTCCGCCATTATCCTG 59 NA Rattus norvegicus 81 Igsf5 ENSRNOG00000028216 ENSRNOT00000085014 1 1 3 80 11 36770795 36770815 TACAAATCGGATGAAGCAAGG 59 36775507 36778519 TAACACGCATCTCTTCTTTCC 59 NA Rattus norvegicus 81 Fhl1 ENSRNOG00000000875 ENSRNOT00000084594,ENSRNOT00000043820,ENSRNOT00000087274 1 3 5 80 X 159169770 159169789 AGTATTACTGCGTGGATTGC 59 159169832 159171037 TACCAAACCCAGTGATGGG 59 NA Rattus norvegicus 81 Tacc2 ENSRNOG00000020457 ENSRNOT00000077908 2 1 4 82 1 201155668 201164782 CTCCACAGAGGACTTCTTCAG 60 201164826 201164844 GTCTCCTTGCTTCTGTGGA 59 NA Rattus norvegicus 81 LOC498435 ENSRNOG00000002134 ENSRNOT00000074889 3 1 3 81 14 5938302 5941745 GAAATTGATCCCAGGACTGG 58 5941788 5941807 ATCATCCAGACAAGGTACCG 59 NA Rattus norvegicus 81 Map7d3 ENSRNOG00000027831 ENSRNOT00000030445 2 1 2 80 X 159190140 159190159 TCTAGAAGCACCTCTTCAGG 59 159189325 159190098 TCCATTTCTGGGTTCTGAGG 60 NA Rattus norvegicus 81 Papd5 ENSRNOG00000024212 ENSRNOT00000084657 2 1 2 80 19 19779358 19779376 AACAGCACCAACAAGTCAC 59 19771886 19777395 CACTGAAGGCAATGCTTGG 60 NA Rattus norvegicus 81 Ireb2 ENSRNOG00000013271 ENSRNOT00000017900 3 1 2 124 8 59457133 59458555 CCAAGTGCAGGATACACCT 59 59474049 59474068 ACCCGTATTGAGTAAGGCAG 60 NA Rattus norvegicus 81 Ireb2 ENSRNOG00000013271 ENSRNOT00000077922 3 1 2 94 8 59420197 59458554 CAGAGCCCAAGGATACACC 60 59458612 59458630 TGGTGCCTCCAAGTTTAGG 60 NA Rattus norvegicus 81 Gpt2 ENSRNOG00000059579 ENSRNOT00000078348 3 1 2 80 19 22603080 22603099 GGAAGAAACTGGCATCTGTG 59 22594181 22603038 TCTGCTTCCTGTCTGAAGTG 60 NA Rattus norvegicus 81 Ern1 ENSRNOG00000012864 ENSRNOT00000085736,ENSRNOT00000017371 1 2 2 80 10 94620140 94622450 CTACATGGGTAAGAAGCAAGAC 59 94620081 94620100 AAGGCTGATGACAAAGTCTG 58 NA Rattus norvegicus 81 LOC100909868 ENSRNOG00000048794 ENSRNOT00000071970 2 1 1 80 9 37753781 37755288 GGACTTTAAAGTGAGTGGACTG 59 37755328 37755347 TGCAACTCATCTGATTGCAC 59 NA Rattus norvegicus 81 Sema3b ENSRNOG00000016512 ENSRNOT00000066296 2 1 1 80 8 116358930 116358949 CATCTTTCGAAGCTTGGGTC 59 116357653 116358889 ACAAACTTGGGTTCATTGAGC 60 NA Rattus norvegicus 81 Ddx39a ENSRNOG00000004373 ENSRNOT00000045974,ENSRNOT00000090312 3 2 2 80 19 24853471 24853865 TGCAGGATCCTATGGAGGT 60 24853906 24853927 TGAGTTTGACGTAATACTGCTG 59 NA Rattus norvegicus 81 LOC685431 ENSRNOG00000024763 ENSRNOT00000034026 3 1 1 60 X 21313762 21313782 AGCTTTCAATGTGATCAACGG 60 21313720 21313738 CATGAACTCTTGCATGGCC 60 NA DesignNoJunction Rattus norvegicus 81 Mospd1 ENSRNOG00000002332 ENSRNOT00000003192 1 1 1 82 X 157759933 157761597 GTGGATATTGTCATTCGTCATAGAG 60 157761637 157761655 TGTTCCGAAACCTGGAGAC 60 NA Rattus norvegicus 81 Tax1bp3 ENSRNOG00000019357 ENSRNOT00000056460 1 1 1 147 10 59746509 59747128 AAACAGACAAGGTGAACGG 58 59747239 59747257 TATGACAGCATGGACTGCT 59 NA Rattus norvegicus 81 Nxt1 ENSRNOG00000004700 ENSRNOT00000006205 3 1 1 100 3 142993680 142993698 AGAGAAACTCTTCTGGCCC 59 142993761 142995849 CCTTAGGGATCCAGTGACTG 59 NA InUTR Rattus norvegicus 81 Lalba ENSRNOG00000010811 ENSRNOT00000014456 1 1 1 80 7 140089822 140090269 CATCTCCTGTGACAAGTTCC 58 140089761 140089779 ATCCCTTTGATAGCCACGA 59 NA Rattus norvegicus 81 Ankfy1 ENSRNOG00000016212 ENSRNOT00000021816 1 1 1 80 10 59281703 59287316 AGTTAGACTTGTCAGATGCGA 59 59287355 59287376 CTCTGAACTCTAACTCATCCGT 59 NA Rattus norvegicus 81 Coro2a ENSRNOG00000008901 ENSRNOT00000089789,ENSRNOT00000011787 2 2 2 80 5 62164778 62165734 TGATTACAAGGTGATGGTGTG 58 62164718 62164737 TGGTGACAGTTGATTGTCCT 59 NA Rattus norvegicus 81 Fkbp10 ENSRNOG00000015941 ENSRNOT00000022029 3 1 2 88 10 88336904 88336922 GTGTGGTACCAGGATCCTC 59 88336973 88337265 AAGGAGGAGAACTCTTCTGG 59 NA Rattus norvegicus 81 AABR07002177.1 ENSRNOG00000055229 ENSRNOT00000080325 1 1 2 82 1 68436600 68436939 CCACCAACAATCGACTTCAG 59 68436982 68437002 GGCTAAATCTACCACATCTGG 58 NA Rattus norvegicus 81 Atp2a3 ENSRNOG00000017912 ENSRNOT00000065181 1 1 3 80 10 59556440 59556458 ATGTCTCTGCCTGTCATCC 59 59556499 59556909 AAATGTCTCAAGAACACCATCC 59 NA Rattus norvegicus 81 Mme ENSRNOG00000009514 ENSRNOT00000088565,ENSRNOT00000042576 2 2 2 80 2 153862098 153865396 AGAAATCAGATCGTCTTCCC 57 153865437 153865457 CCCATAGTTCAATGAGTTGGA 58 NA Rattus norvegicus 81 Svop ENSRNOG00000000693 ENSRNOT00000000874,ENSRNOT00000084511 2 2 2 80 12 48345338 48346499 CATTGGAAGAAATGTGCTAACC 58 48346540 48346558 TAAACGTAGGCTGCTTGGA 59 NA Rattus norvegicus 81 Ahcyl1 ENSRNOG00000018569 ENSRNOT00000066501,ENSRNOT00000079993 2 2 2 80 2 210443538 210444065 GCTACAACACAGGCTTTGG 60 210443476 210443495 AGGAAGCAAGTACACATCCT 59 NA Rattus norvegicus 81 Sec31a ENSRNOG00000002251 ENSRNOT00000003072 3 1 3 87 14 10897136 10897154 TTCAGCTTATGCACTGCCT 60 10897203 10902046 ATTCTGAGGACCTGTTCTCTG 59 NA Rattus norvegicus 81 Wnk4 ENSRNOG00000020441 ENSRNOT00000076366 1 1 3 93 10 89183380 89183398 AAGTTGAGATGCTCAAGGG 57 89183455 89184385 ATCTCCTCAGGTACCTGAC 58 NA Rattus norvegicus 81 Ctns ENSRNOG00000028688 ENSRNOT00000030343,ENSRNOT00000083390 3 2 2 80 10 59753210 59753320 ACATCCAGGAGGAGTTTCTC 59 59753149 59753168 CATGTAAGCTGAAGAAGGCG 59 NA Rattus norvegicus 81 P2rx1 ENSRNOG00000017606 ENSRNOT00000024068,ENSRNOT00000088245 1 2 2 80 10 59574637 59574658 CAGCTCCTTTGTAGTTATGACC 59 59574699 59575110 CCACCTTCTGGGTTCTCTG 60 NA Rattus norvegicus 81 Hnf4a ENSRNOG00000008895 ENSRNOT00000011978 3 1 3 152 3 159902589 159941151 GAGTCCTTATGACACATCCC 58 159941266 159941284 CTCCTGAAGAATCCCTTGC 58 NA Rattus norvegicus 81 Aif1 ENSRNOG00000000853 ENSRNOT00000001138 1 1 3 97 20 5162966 5163746 GCCTGAGGAAATTTCAAGAGG 59 5162783 5162801 TGGGATCATCGAGGAAGTG 59 NA Rattus norvegicus 81 Aif1 ENSRNOG00000000853 ENSRNOT00000001138 2 1 3 98 20 5162966 5163746 GCCTGAGGAAATTTCAAGAGG 59 5162782 5162801 TTGGGATCATCGAGGAAGTG 60 NA Rattus norvegicus 81 Foxi2 ENSRNOG00000018917 ENSRNOT00000025569 1 1 1 60 1 207655045 207655063 CCCAGAGATGAGAACGACC 60 207655725 207655743 TCTCACAGTTTGGGTCCAG 59 NA DesignNoJunction Rattus norvegicus 81 Trpv1 ENSRNOG00000019486 ENSRNOT00000026493 1 1 2 80 10 59804377 59805017 CTACTACAAGGGCCAGACAG 60 59805060 59805078 CCATTCTCCACCAAGAGGG 60 NA Rattus norvegicus 81 Prep ENSRNOG00000051061 ENSRNOT00000076640,ENSRNOT00000091456 2 2 2 80 20 50177663 50194468 TGAACAGACAAAGGCTTTCG 59 50194507 50194529 TATAGACCTCTGATTGGACACTG 59 NA Rattus norvegicus 81 Arhgap6 ENSRNOG00000003956 ENSRNOT00000051655 2 1 2 80 X 26354249 26357944 AGTAAGACAATTGCGTGAGGA 60 26354189 26354207 GCTGCCACATCATGAACAC 60 NA Rattus norvegicus 81 Arfgap1 ENSRNOG00000043150 ENSRNOT00000082267 2 1 3 92 3 176486526 176486545 GTTACAAGCAGCAGTCAGAG 59 176487425 176488637 TACTGCCAACTCCCTTCTC 59 NA Rattus norvegicus 81 Rbck1 ENSRNOG00000006695 ENSRNOT00000085995,ENSRNOT00000045314,ENSRNOT00000085849 1 3 3 80 3 147803981 147808257 ACAAGACATCAGGCTTTGTG 59 147803920 147803939 ATATCAGGGCGTACTGTGAG 59 NA Rattus norvegicus 81 Rbck1 ENSRNOG00000006695 ENSRNOT00000085995,ENSRNOT00000085849 2 2 3 199 3 147799983 147800915 GTATGAGCAGCGGAAACAG 59 147798793 147798811 TGTTTCGGATGGTACCCTG 59 NA Rattus norvegicus 81 G6pc ENSRNOG00000051171 ENSRNOT00000028033,ENSRNOT00000085831 3 2 3 83 10 89292787 89292805 AGCTGAACGTCTGTCTGTC 60 89292852 89294581 CAGCAATGCCTGACAAGAC 60 NA Rattus norvegicus 81 Mitd1 ENSRNOG00000018467 ENSRNOT00000024959,ENSRNOT00000090870 1 2 2 154 9 44483604 44483622 TAAATCCAGCCTGGGACAG 59 44478576 44483487 CTTTGGTGCCTTTCAGAACC 60 NA Rattus norvegicus 81 Sept7 ENSRNOG00000006545 ENSRNOT00000081574 1 1 3 112 8 26432873 26434072 TCAACCGAAGAACCTTGAG 57 26434143 26447683 CAGATTCACCTACTACCATAAGAG 58 NA Rattus norvegicus 81 Arid1b ENSRNOG00000017030 ENSRNOT00000084454 2 1 2 82 1 46169894 46169917 CAGTAACTTTCAGCAGAGTAACTC 60 46169957 46182857 TTCTGGAGTAGTTGCCTTGG 60 NA Rattus norvegicus 81 Zfp787 ENSRNOG00000015456 ENSRNOT00000084899,ENSRNOT00000059069 3 2 2 81 1 71434848 71434866 GAAGAAGCTTGGTCTCCAG 58 71434911 71445500 TGATGAGGATGTCCACTGG 59 NA Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000001115,ENSRNOT00000087615,ENSRNOT00000080174 3 3 5 69 20 4806965 4806983 TTCCCAGCCATTGCTATCC 60 4806812 4806831 CCTTGAACTGCTGATACCGA 60 NA DesignNoJunction Rattus norvegicus 81 Satb1 ENSRNOG00000012942 ENSRNOT00000077417,ENSRNOT00000017556 2 2 2 80 9 2205346 2205364 CACAGGTGGAAAGATGCAG 59 2205405 2209049 AACATGGTTCCTTTCCTAAGGT 60 NA Rattus norvegicus 81 Tmem171 ENSRNOG00000015449 ENSRNOT00000089293,ENSRNOT00000020726 2 2 2 80 2 28798503 28798524 GAGATACCTCTGAAATCGAAGG 58 28794472 28798465 ATATTATCACTGAGTCACCCAC 58 NA Rattus norvegicus 81 Dlc1 ENSRNOG00000010780 ENSRNOT00000090477 1 1 2 80 16 59077973 59077991 ACCACATCAGGGATTCCAC 59 59078035 59219555 CTTCAATTTCTGCCAGCCT 58 NA Rattus norvegicus 81 Arpp21 ENSRNOG00000008919 ENSRNOT00000085161,ENSRNOT00000042854 3 2 3 80 8 120417622 120417640 AGTGAAGAATCCCAGAAGC 57 120415397 120417580 GTGCATTCTGTTCTGATTGTC 58 NA Rattus norvegicus 81 Gulp1 ENSRNOG00000003242 ENSRNOT00000004463,ENSRNOT00000065212,ENSRNOT00000085908 1 3 3 80 9 51469351 51469370 TTGGCAGTACTGAAGTGGAG 60 51469412 51479678 TGTGTCTTGCAAACTTCAGC 60 NA Rattus norvegicus 81 Zswim6 ENSRNOG00000014528 ENSRNOT00000078884,ENSRNOT00000064292 1 2 2 80 2 39001979 39001998 AGATGGAAATCATGGTGGTG 58 38997842 39001936 TTCGATGAATCTGGGTTGG 58 NA Rattus norvegicus 81 Ubr4 ENSRNOG00000018183 ENSRNOT00000039663 3 1 2 95 5 157899479 157899498 CTCCTAACCTGAACCAGAGC 60 157899556 157901426 AACTCACAACCAGCCTCTC 60 NA Rattus norvegicus 81 Tmco4 ENSRNOG00000017401 ENSRNOT00000023431,ENSRNOT00000088556 2 2 2 80 5 157475742 157475761 CTTGATTGGATTCAGCCTGG 59 157475804 157494440 ATCCCTTGGCAATCTTGCT 60 NA Rattus norvegicus 81 Mon2 ENSRNOG00000004185 ENSRNOT00000045130 3 1 3 80 7 66777513 66777534 CTGTAAACCTCCACAGTATGGA 60 66777573 66778161 GGTGCAAATAGTTGGATCTGG 59 NA Rattus norvegicus 81 Utrn ENSRNOG00000011058 ENSRNOT00000016273 2 1 2 91 1 6853891 6961861 CAGATCTGATGAACACAACGA 59 6842114 6842132 CATTGATGGGTGGTTTCCC 59 NA Rattus norvegicus 81 Atf6b ENSRNOG00000000431 ENSRNOT00000080649 1 1 5 108 20 4420369 4420387 CTTGCTGATGAGCTGAGTG 59 4420459 4420661 TCCGTAGCTGAGACTTCTG 59 NA Rattus norvegicus 81 Tpp2 ENSRNOG00000011194 ENSRNOT00000078220,ENSRNOT00000085267,ENSRNOT00000015393 1 3 3 80 9 50705165 50705184 GGACTCAGCTAATGAATGGG 58 50705225 50706519 CTTTCAGTCCTGAAAGTACCA 58 NA Rattus norvegicus 81 Tmem30a ENSRNOG00000010895 ENSRNOT00000085725 3 1 2 80 8 87245464 87245483 CTCATCTTCATTCCCATCGG 58 87233008 87245424 TGTTCCAGTGTAATCAATCTCG 59 NA Rattus norvegicus 81 Leng8 ENSRNOG00000018642 ENSRNOT00000025338,ENSRNOT00000077964 3 2 2 80 1 73730944 73731240 CAGTGCACAATACGTTTCTC 58 73730883 73730901 TACTGTTGGTACCACTGGT 58 NA Rattus norvegicus 81 Adam3a ENSRNOG00000017554 ENSRNOT00000078085 3 1 2 80 16 72133047 72133068 CAGATGTTCATAGGCTACACTG 59 72133106 72133223 TTCTGATATGGATCTGTGGGTC 60 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468,ENSRNOT00000087055,ENSRNOT00000077655,ENSRNOT00000090518,ENSRNOT00000083489,ENSRNOT00000080476 3 7 8 103 20 4389611 4389833 TGGACTACATCAATGAGACAC 58 4389528 4389546 GAACCCTTGAACCTGTTCC 58 NA Rattus norvegicus 81 B3gnt1 ENSRNOG00000046904 ENSRNOT00000074972 2 1 1 60 1 220323967 220323986 GGCAGTATGGTTTCAATCGA 58 220324251 220324270 AAATTAAACCCTGCCATGTG 57 NA DesignNoJunction Rattus norvegicus 81 B4galt5 ENSRNOG00000008283 ENSRNOT00000079414 2 1 2 81 3 164046840 164046859 ACTACTATGGCTGTGGACAG 59 164046252 164046799 AACTCTGTGTAAGGAAGTAGGT 59 NA Rattus norvegicus 81 RGD1561520 ENSRNOG00000022407 ENSRNOT00000037130 2 1 1 60 2 52171450 52171468 CTTCCTCCACAAATTGGCG 60 52171286 52171305 CTTGAGGAAATGCTCTGTGC 60 NA DesignNoJunction Rattus norvegicus 81 Adam5 ENSRNOG00000017518 ENSRNOT00000058330,ENSRNOT00000092198 2 2 2 80 16 72018786 72019643 TCATACTTACTGGCATTTGTGG 59 72019684 72019702 ACCATAGATCGGTTTGCAC 58 NA Rattus norvegicus 81 Adam5 ENSRNOG00000017518 ENSRNOT00000058330 3 1 2 90 16 72065763 72065781 CAGAGAAAGAAGCGAAGGC 59 72067770 72077726 TTAGTGAAGGGTGCTTCCT 58 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000079084,ENSRNOT00000078243,ENSRNOT00000048985 3 3 8 81 20 4482894 4482915 CAAATTCTTCCTCTATGGCCTC 59 4482957 4483254 AGCAGGAACTGGATCTGTG 59 NA Rattus norvegicus 81 Ghr ENSRNOG00000015654 ENSRNOT00000046951,ENSRNOT00000088876 2 2 4 103 2 53157872 53179739 AGATTTCCGGTTTCCATGGT 60 53152536 53157808 GCATCTTAATCCTTTGCTGCT 59 NA Rattus norvegicus 81 Slc35c2 ENSRNOG00000018649 ENSRNOT00000087646,ENSRNOT00000025238 3 2 2 80 3 161806205 161806889 ATCACTGTGTCTCTGTACAC 57 161806144 161806163 CTCCAGCTTGAAGATCAGAG 58 NA Rattus norvegicus 81 Atg5 ENSRNOG00000000322 ENSRNOT00000080283 3 1 2 198 20 49325108 49330220 TGGAACATCACATTTCAAGC 57 49332437 49352988 GGTCAAATCTGTCATTCTGC 57 NA Rattus norvegicus 81 Crocc ENSRNOG00000008334 ENSRNOT00000055839 2 1 2 110 5 159569695 159574309 TCAATGAGAGGGACACAGAG 59 159569519 159569537 CTCTCAGCATGTCGTTCAC 59 NA Rattus norvegicus 81 RT1-CE10 ENSRNOG00000050210 ENSRNOT00000079494 3 1 3 132 20 155176 155194 TTTCTTGGACCTTTGGCTG 58 154540 154905 CATAAACCATCACTGGAGCAG 59 NA Rattus norvegicus 81 Rnf38 ENSRNOG00000013956 ENSRNOT00000077367,ENSRNOT00000060203,ENSRNOT00000091944 1 3 3 80 5 59621207 59621225 ACATTACCTCCGTCAGCTC 59 59620030 59621166 TGGATAAGGTACTCCAAAGGAC 59 NA Rattus norvegicus 81 Ambra1 ENSRNOG00000017422 ENSRNOT00000045644,ENSRNOT00000085614 3 2 3 80 3 80718516 80718535 CCTCCTCTTCTTCCTCAGAC 59 80718577 80732041 CACCATTGTCCTCAAAGTCC 59 NA Rattus norvegicus 81 Capzb ENSRNOG00000007330 ENSRNOT00000083577 1 1 2 80 5 157665474 157690581 GGTCTGAAATGAACTCTAGCG 59 157690623 157690641 TCTCAATCTGCTGTGGAGG 59 NA Rattus norvegicus 81 Adprhl1 ENSRNOG00000019504 ENSRNOT00000073240 3 1 4 81 16 81666026 81666045 CTAAGAGGGCGATCAAATGG 59 81666089 81676860 AATGTCCGGTTCAAGTCTG 58 NA Rattus norvegicus 81 Birc7 ENSRNOG00000043311 ENSRNOT00000068252 1 1 1 60 3 176441410 176441428 AAGAATCCAGGCCTACACC 59 176441535 176441553 ATCTTCCTGTTCTTCCCGT 58 NA DesignNoJunction Rattus norvegicus 81 Pde1a ENSRNOG00000054212 ENSRNOT00000090547 2 1 2 80 3 66827913 66827938 ATTCTGGCATCTTTCTTTCCC 59 66827853 66827872 TGACTTCCGATCACAAAGTG 58 NA Rattus norvegicus 81 Dgkz ENSRNOG00000017737 ENSRNOT00000091265 1 1 2 108 3 80855393 80875680 CAGACACAGAAAGCCATCAC 59 80855304 80855322 CCACAGTACTCCGGATCTG 59 NA Rattus norvegicus 81 Atp7b ENSRNOG00000012878 ENSRNOT00000089265 3 1 2 88 16 74887643 74887661 AGACGAGAAAGATCCTCCC 58 74887711 74906123 TAGATAAGATCTGGGACCTCC 58 NA Rattus norvegicus 81 AY172581.10 ENSRNOG00000031333 ENSRNOT00000045310 1 1 1 60 MT 5229 5251 GCCTTAAGGTGATTATCATGTCG 60 5191 5213 TAGTAGAGGAGATTCTCTACACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041777 ENSRNOT00000063530 2 1 1 60 5 99616213 99616232 TCAAGCTAAACAGAGTCAGG 57 99616172 99616190 CAAGTATTCCCAGGCAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA40 ENSRNOG00000053278 ENSRNOT00000079766 3 1 1 60 5 5464376 5464395 GTAAATGGTCTTCTGCAACC 57 5464414 5464436 CTCCTGTATGTGTTAGTACTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Gpkow ENSRNOG00000022939 ENSRNOT00000039000 2 1 1 80 X 15640725 15640746 TGACAATTGAAGATGTCCTGAG 59 15639340 15640689 CTTCTTTCACACCTTCTAGAACTC 59 Novel Rattus norvegicus 81 AABR07038269.1 ENSRNOG00000050081 ENSRNOT00000074439 1 1 1 60 X 44158122 44158140 AGTTGAGCCTTATGTGACC 57 44158163 44158182 CAAGATGAGTTCTCGGACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009891.1 ENSRNOG00000059664 ENSRNOT00000088891 2 1 1 60 2 115231944 115231965 TTCTGTTCCTGAGCATCGT 59 115231902 115231920 GAGATGAGCAGGATCATGC 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000052662 ENSRNOT00000080827 3 1 1 60 2 252246381 252246405 ATAGAGAAGATTAGTATGGTCCCTG 59 252246345 252246366 ATGGAATCCTTCATGAGTTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054911 ENSRNOT00000077732 2 1 1 61 8 25522798 25522817 CTTGTCGGTAGGTGGTAGAG 59 25522839 25522859 ATACAGCAGTTCATAGGTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058108 ENSRNOT00000077472 3 1 1 60 2 80610652 80610671 TTCGGTCAAGGGTATACGAG 59 80610611 80610630 TTGAGAGCTTGTTTGGAGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044629 ENSRNOT00000069896 1 1 1 60 11 53453848 53453866 TCGGAAGCTAATAAGCAGG 57 53453806 53453824 GTCCTTTACAACCCTCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056936 ENSRNOT00000082328 2 1 1 60 2 221706031 221706049 GCTCTCAAGATTAGCACCC 58 221705989 221706007 GTTGGCCTTGAACTCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057260 ENSRNOT00000088640 3 1 1 61 8 122644845 122644863 AGAGATTAGCATGGCTCCT 58 122644802 122644820 ATGGATACTGCCTTCCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055419 ENSRNOT00000091343 1 1 1 60 11 75965159 75965178 CTTAAGCTGACTGGTCAAGG 58 75965198 75965219 GAGATAGTTTGGAGGTTCTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053246 ENSRNOT00000089032 1 1 1 60 11 26461983 26462002 GAGGCTATGTCTACCCTCAG 59 26462022 26462043 TGTTAGGCTAGTAGTCATTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060465 ENSRNOT00000079120 3 1 1 60 5 152997490 152997511 ACAGAGAAGATGATAGTCTTGG 57 152997530 152997550 TACAGCAAGCTTCACTAACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060433 ENSRNOT00000082094 3 1 1 62 11 72398330 72398348 CAACTTTCCCTTCCCTCAG 58 72398286 72398305 CTCAGACACTGTGTCATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD69 ENSRNOG00000055658 ENSRNOT00000077419 3 1 1 60 16 7099154 7099175 TGAAGCAATGATGACAGATTGG 59 7099115 7099135 GTTGGATTGAACAAACTCAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056877 ENSRNOT00000084423 1 1 1 60 8 9365288 9365306 GATCTGGCTGTGACATCTG 58 9365330 9365348 TAACCAGATCACCCGAAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070060.1 ENSRNOG00000052582 ENSRNOT00000080059 1 1 1 91 8 47036267 47036575 AAAGCAAAGACCAAGCTGC 60 47036630 47036648 ATGTAGATCTTCTGGCGGC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000056215 ENSRNOT00000089069 3 1 1 60 11 44762578 44762596 AAGTCAGAAGGTGGCAGAG 59 44762618 44762638 TCCATAAGTCAGAATGCTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058634 ENSRNOT00000087436 2 1 1 60 8 61160885 61160905 GAACAATTCAGTGAGAGCAGG 59 61160845 61160866 GGATGATTTACAGATTCGTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051587 ENSRNOT00000080212 3 1 1 66 16 10439145 10439163 ACATCTGCGTCAGTAGGTG 60 10439192 10439211 TTCACAGGTTAGAACACCGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045755 ENSRNOT00000071647 3 1 1 62 11 89141688 89141707 TACTACCCTGAAGAAGCCTG 59 89141645 89141663 GTAACTAGGCTGACCCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048075.1 ENSRNOG00000046591 ENSRNOT00000072391 3 1 1 60 5 60516481 60516499 TCTGTGAGTTCAAGGCCAG 60 60516522 60516541 CTTATACTCCTGGCTGTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA41 ENSRNOG00000055453 ENSRNOT00000087703 3 1 1 62 5 59494918 59494936 GTAGCATTCCTCTGTGGGA 59 59494959 59494980 CTTTCTATGTAGCTAAGAGGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049764.1 ENSRNOG00000041600 ENSRNOT00000063353 1 1 1 60 5 136907960 136907979 GACATTGGAAGAAGGAAGGT 58 136908002 136908020 TTACTCAGTCCCACAAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058307 ENSRNOT00000087587 3 1 1 61 2 223128686 223128708 CAGTACAGAGAATTATCATGGCC 59 223128726 223128747 ATGGAAGCTTCATGAATCAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061086 ENSRNOT00000081889 2 1 1 66 2 243846077 243846097 CTCATGTGGGATCACATACAC 59 243846125 243846143 ATCCTTCCACAAGGACCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057730 ENSRNOT00000086533 2 1 1 70 2 237613098 237613116 GCTTCAGCAGCACATACAC 60 237613046 237613064 GTAATCCTAGTGCAGGTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055120 ENSRNOT00000084067 1 1 1 60 2 150482270 150482291 GATAGGAGAAGATTAGCATGGC 59 150482231 150482250 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059958 ENSRNOT00000090650 1 1 1 60 5 127092241 127092262 CTGAGTAGAAGACTGTCAAGAG 58 127092283 127092301 CCTTTGGAGGTTCTCCCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000060942 ENSRNOT00000083562 3 1 1 60 16 34695232 34695256 GTGTTGTTCTTATATCAGTCAGAGG 59 34695196 34695216 CAAGCTAGGATGAACCAAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056250 ENSRNOT00000078902 2 1 1 60 16 51239307 51239329 GGAACGATACAGAGAAGATTAGC 59 51239349 51239367 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA8 ENSRNOG00000053500 ENSRNOT00000091501 3 1 1 69 5 13087032 13087050 TGTATGGGCATCTGTGCTC 60 13086981 13087002 TTGAATTTCTATAGGGCTGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061140 ENSRNOT00000077299 3 1 1 60 16 37035382 37035401 GCTGGAACATCTATCACCTC 58 37035341 37035360 CCTAGCCAGACAAATCAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000055926 ENSRNOT00000090491 3 1 1 60 X 29175801 29175819 TGGCTGCAAACAGTATCCT 59 29175841 29175861 CCAAGTTCTCCTAGAGAAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000051984 ENSRNOT00000088567 3 1 1 86 16 35199257 35199275 TTGACAAGGACGGAAGAGG 59 35199324 35199343 CAAACAGTGGTGAGATGCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061435 ENSRNOT00000085580 1 1 1 60 2 176276198 176276219 GACTATCTTCCCAGAATACAGG 58 176276159 176276178 GACGCAGCAACTCATATACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000053793 ENSRNOT00000088146 3 1 1 62 16 49874170 49874188 GTGTCAGTAGGTGGCAGAG 60 49874210 49874232 TATTCAGAGGTCAGAACACTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061353 ENSRNOT00000089730 2 1 1 62 8 21823124 21823144 GTGATCAGGATGTGACATCTG 59 21823168 21823186 AAGCTAGACCAGCCAAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059888 ENSRNOT00000079145 3 1 1 60 8 91715737 91715755 ATTCAGGGAACTTGACTGC 58 91715777 91715797 AGGGAGAACTCTAACTCAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025481.1 ENSRNOG00000050139 ENSRNOT00000073719 2 1 1 78 16 39029720 39029738 CAGCAATGAATGCTTCAGG 57 39029660 39029680 ATGATCATCTGAGGATGACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054717 ENSRNOT00000082640 2 1 1 60 16 23437271 23437291 GTCAATAAGTGGCAAAGAGGA 58 23437231 23437251 GATGTTCAAAGGTCCAAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000057320 ENSRNOT00000092062 1 1 1 60 1 55623887 55623909 CAGATTGAACTCCTGTTCTACAC 59 55623849 55623868 TTTAGGCCAATCAAGTGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045798 ENSRNOT00000073711 3 1 1 67 16 5069306 5069329 CCTGAACATATCCAATCTCATCTG 59 5069262 5069280 CATCCAAATGCTAGCCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057503 ENSRNOT00000078702 1 1 1 61 16 9448626 9448644 ACAGGCTCTGTCTACACTC 59 9448666 9448687 TGTTAGGCTACTAATCCTTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060581 ENSRNOT00000084808 2 1 1 60 17 21251937 21251958 CTACCATTAGAAGGGTACAGAG 57 21251898 21251916 ATTTGCAGGTCATCCTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061206 ENSRNOT00000082810 3 1 1 60 6 87210124 87210142 AGTAGGTGGCAGAAAGGAG 59 87210082 87210103 CAGATGTTCATTGTCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA24 ENSRNOG00000061126 ENSRNOT00000090845 1 1 1 60 X 62641893 62641914 AATGTCCTGTAGTAGCTTTCTG 58 62641854 62641872 TAGAGGTACCATCCACCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072362.1 ENSRNOG00000052980 ENSRNOT00000071557 2 1 1 82 14 2533726 2534553 CGGGACCACAGAAATAGCA 60 2534599 2534617 TTCTGTTGCTTGGGTTCCT 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000057374 ENSRNOT00000089691 2 1 1 60 X 3465654 3465674 TTGATTTGGAGGCACATACAC 59 3465614 3465635 TTCTAGAGGCCATGCTAATCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067198.2 ENSRNOG00000051967 ENSRNOT00000082154 1 1 1 75 9 34389365 34389383 AAATGTGATCGCTTCTCGG 58 34389308 34389332 CCAGTGATGTATTACTCTACTACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD20 ENSRNOG00000060216 ENSRNOT00000081260 3 1 1 76 9 93370654 93370677 GGATATGATGACTGATTACCTGAG 59 93370601 93370624 GGATCAGAACTTGACTATCTAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021704.1 ENSRNOG00000058096 ENSRNOT00000082869 1 1 1 60 13 86670889 86670907 TCACAGACCAGAGTTTGGA 58 86667406 86667425 ATTCTGTGGCAGTTTAAAGC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07003935.2 ENSRNOG00000046102 ENSRNOT00000075611 2 1 1 60 1 121202909 121202927 TGATCAGTCAGGCTACTGG 59 121202867 121202885 GGCTTTGGTTATACCCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061462.2 ENSRNOG00000058338 ENSRNOT00000091689 3 1 1 60 4 126592902 126592922 AATACAGTTAGAGGCCTTTGC 58 126592943 126592962 CACACCATCAGACTTCAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056965 ENSRNOT00000090251 1 1 1 60 9 17079509 17079529 GGTACTGAGAAGATTAGCTGG 58 17079549 17079569 CCACTGAGTTATGAATTTGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059638 ENSRNOT00000090904 1 1 1 60 3 139671390 139671410 GATAGGCTTGATTCTGCTGAC 59 139671350 139671368 ATGAATGCAGAGTGACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057402 ENSRNOT00000077720 3 1 1 61 3 58127168 58127187 CTCACTTCAGCTGCAAACAG 60 58127205 58127229 CTTGTACAAAGGTCATACTAACCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053837 ENSRNOT00000083607 2 1 1 60 4 128865873 128865896 GAATGATACAGAGATTAGCATGGC 60 128865836 128865855 AACACTTCACAGATTTGGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054171 ENSRNOT00000080225 3 1 1 77 9 3389412 3389432 ATACCATGATCACTAAGGTGG 57 3389355 3389373 GAAATTCCAGGGTCAGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000059854 ENSRNOT00000086430 2 1 1 60 2 188074580 188074598 ATGGTGTGGTCCTTCTGTG 60 188074619 188074640 CTACAGTTTATTCTGGCATGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044968 ENSRNOT00000070235 1 1 1 60 X 11124409 11124433 TACTAACCTGAATATCCCTGATCTC 59 11124373 11124391 CTCACTAGGCTCAACCCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060759 ENSRNOT00000081187 1 1 1 60 X 40583960 40583979 TGTGTCAATAGGTGACAGAG 57 40584001 40584020 GCATAGGTCAGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031674.2 ENSRNOG00000046154 ENSRNOT00000072209 3 1 1 67 18 25364163 25364186 AAGGGAAATCCTTTCAAGGAG 58 25364116 25364137 CTGGTGCATCAGAAGATAAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07031734.2 ENSRNOG00000042376 ENSRNOT00000065447 3 1 1 60 18 30838422 30838443 ATATCAGTACTCTTCCTCCTGG 58 30838464 30838483 CTGATCTGGAGGAGTGTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000054241 ENSRNOT00000079402 3 1 1 60 X 133363713 133363732 TATACGAGTAGCTGCACTCC 59 133363672 133363691 CTACAATGGACCTTGAGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053976 ENSRNOT00000091887 3 1 1 60 15 11045037 11045059 CATCAATAGGTGACAGAAAGGAG 59 11045078 11045097 GTTCATGGGTTGGAACACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126701.1 ENSRNOG00000013739 ENSRNOT00000071448 1 1 1 60 1 149718193 149718212 TTCAGATGACACTGACTTCC 57 149718234 149718254 TTGAAAGTATGCACACTTGC 57 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000056682 ENSRNOT00000080329 2 1 1 61 16 41951320 41951343 GAAGAATACAGAGATTAGCACAGC 60 41951282 41951301 GAACGCTTCATGAATTTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061287 ENSRNOT00000080889 2 1 1 60 15 88787236 88787254 ACTGATGTGTCACATGAGC 58 88787194 88787213 CTGAGCATAGACATAGCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000061340 ENSRNOT00000078726 1 1 1 60 16 9730863 9730884 TAAAGCATTACTACCTCTGCCT 59 9730824 9730842 GTTTGAAGCCAAGCATCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC119111.1 ENSRNOG00000055667 ENSRNOT00000086031 1 1 1 80 1 254513151 254513175 CTCCCAGAAGGAGAAATGGT 59 254512204 254512225 AAGAGGGAAGAATTGTCTTCGT 60 Novel Rattus norvegicus 81 SNORD43 ENSRNOG00000052611 ENSRNOT00000077507 2 1 1 61 7 121302276 121302297 CAAATGATGAATCCTTTGACGG 58 121302236 121302257 CAGATCAGAACATGACAATCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058875 ENSRNOT00000090435 3 1 1 64 6 100454194 100454212 CAGGCATACTGAAACTGGA 57 100454240 100454258 TGTTCATGTCACCCTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044385 ENSRNOT00000069652 1 1 1 60 6 29932874 29932895 CTTAACAACTAAGCAGGGTCAG 59 29932915 29932934 CTGTTTGATGTGGATCTCCT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000060560 ENSRNOT00000080705 3 1 1 60 16 49592771 49592792 TGACTGTTCCTTAGCATTTCCT 60 49592811 49592831 TTTATTGTAAGGCCCAAGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051820 ENSRNOT00000081404 2 1 1 60 X 43276854 43276876 CCTTCAAGTATAGCTTCTCTGTC 59 43276816 43276835 CATAGCCTCTTTCCTCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041705 ENSRNOT00000063458 2 1 1 60 7 67029070 67029091 ACACATTTGATCCTATCTGAGC 58 67029031 67029049 TCCAAGAACCAATCAGACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053293 ENSRNOT00000078095 1 1 1 62 1 239939936 239939954 ATGTTTGTCAGTTGGCAGC 59 239939892 239939910 CATGGGTCAGAATGCTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000056049 ENSRNOT00000077522 2 1 1 60 6 133824895 133824913 ATGATGAGATCTGGTGGCG 60 133824934 133824955 TCAGATGTCTGGATACTTGGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066871.3 ENSRNOG00000061718 ENSRNOT00000085293 2 1 1 113 9 20528638 20528659 ACATACGCACATACATTCACAC 60 20528546 20528566 GTGAATGTATGTGCGTATGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026984.2 ENSRNOG00000055099 ENSRNOT00000085437 2 1 1 81 17 8435406 8435426 TGATCAGTTGGAGCAAAGC 59 8435343 8435362 AATAAGAAGTGACGTGTGGC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000050589 ENSRNOT00000073815 3 1 1 61 12 1512877 1512895 CCCGATCTCGTCTGATCTC 59 1512834 1512853 CTCCCATCCACGTACTAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000056091 ENSRNOT00000085064 1 1 1 60 X 74936893 74936912 AGGCTATGTCTGTCTATGCT 58 74936852 74936875 TAGGCTACTAACCATTCAGATGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000059000 ENSRNOT00000091939 1 1 1 60 X 15590847 15590865 CAAATGCAGTGTCCTTGGG 59 15590884 15590907 GTCCCTTAGGGTAACTCATATAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA68 ENSRNOG00000051428 ENSRNOT00000088706 2 1 1 83 17 71306470 71306489 AATTTAACAGTGGTGTGCAC 57 71306535 71306553 AACCTCCCAGTCTACTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059533 ENSRNOT00000078169 1 1 1 60 8 117815368 117815388 GACCTAGGAGTTGGAATAGGA 58 117815328 117815348 CTGCAATACCAGGTTGATGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000060666 ENSRNOT00000091580 2 1 1 60 10 88545049 88545067 GAGTTGAACACCAACTGCA 59 88545091 88545109 TGTGATAACCTGGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000053593 ENSRNOT00000080809 1 1 1 60 1 189345546 189345566 CTAGATGACTGGACAGGAGAG 59 189345506 189345524 TTCTAAGCTCTGGTGAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000053594 ENSRNOT00000089558 1 1 1 60 9 41046445 41046465 AGAGGCAGAATAAACCTACAG 57 41046405 41046424 TCTCCCTATTCACCCTACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000053594 ENSRNOT00000089558 3 1 1 60 9 41046445 41046466 AAGAGGCAGAATAAACCTACAG 58 41046406 41046426 CTCCCTATTCACCCTACAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061534 ENSRNOT00000086394 2 1 1 60 2 217707297 217707317 TGGCTTCCATGTAACATATGC 59 217707257 217707279 TCAGAACAGTGATCCTACTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059264 ENSRNOT00000087292 2 1 1 60 8 32413547 32413568 ATACAGAGAAGATTAGCATGGC 58 32413508 32413527 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050574 ENSRNOT00000072609 1 1 1 60 10 105278130 105278149 CTTCCATCTCTGAATGCTCC 58 105278089 105278107 CTAACCCTGCCTAGCTTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000050574 ENSRNOT00000072609 2 1 1 60 10 105278088 105278106 GAAGCTAGGCAGGGTTAGG 60 105278046 105278066 CCCAGTAGTCTCAGACAATCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052012 ENSRNOT00000079858 2 1 1 60 9 71697709 71697727 CTGATTCCTGCTCCTTCTC 57 71697667 71697686 CCCACTGGTACAGATATGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053630 ENSRNOT00000091097 1 1 1 60 8 21492553 21492577 ATATCGAGAAGATTAGCATAGTCCC 60 21492593 21492613 GGAATGTGTCAAGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016418.1 ENSRNOG00000051014 ENSRNOT00000071355 3 1 1 115 14 99787858 99787876 TTCTGACTGGTGTGAGGTG 59 99787759 99787779 ATTCTCAGCTGAGGGATCG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000056743 ENSRNOT00000087879 3 1 1 69 2 207073722 207073743 GCAGCACATATGGTTAAATTCG 59 207073674 207073692 TTTGTGTCATCCTTGTGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070816.1 ENSRNOG00000054182 ENSRNOT00000086145 1 1 2 89 8 85605739 85605759 CACATTTACGGATTGGAAGCT 59 85605809 85620059 GGCTCGATTTCGTTTGATCC 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000057090 ENSRNOT00000078811 2 1 1 60 4 157485708 157485726 GTGTTTCCTTCAGCAGCAC 60 157485748 157485768 GACCATGCTAATCTTCTCTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008293.3 ENSRNOG00000057463 ENSRNOT00000071415 3 1 1 80 2 52156635 52156655 AAGAATGCAGATCCCATGC 58 52156699 52156717 GTGTCTGCTTTGATGTGGA 58 Novel Rattus norvegicus 81 SNORD113 ENSRNOG00000057088 ENSRNOT00000079443 1 1 1 60 6 133825651 133825670 CCAATGATGAGATCTGGTGG 58 133825690 133825711 GATATCTGTTCACAAGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035064.1 ENSRNOG00000051390 ENSRNOT00000074496 1 1 1 93 12 3783726 3783745 CCTAAAGAAAGAGATGCCCA 57 3783798 3783823 TTTGACTATTATGTGGGAGGAG 57 Novel Rattus norvegicus 81 AABR07036974.1 ENSRNOG00000030819 ENSRNOT00000047059 2 1 1 60 X 8646278 8646296 TGGGAGCTATGATCCACAG 59 8646318 8646338 AGAGTCATTGCCATAATAGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027753.2 ENSRNOG00000047776 ENSRNOT00000049785 1 1 1 60 17 43808867 43808886 GTTCGTGAACGACATCTTCG 60 43808912 43808930 CTTGTTGTAATGCGCCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000060113 ENSRNOT00000084556 3 1 1 60 2 96279771 96279792 GTCAAGGGTATATGAGTAGCTG 58 96279811 96279831 TGGAGTTAGAGCTTGTTTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000052327 ENSRNOT00000081092 2 1 1 61 3 150800257 150800280 GGCTAAGATCAAGTGTAGTATCTG 59 150800299 150800318 TGCATGTGTAAATGTTTCCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063314.1 ENSRNOG00000061354 ENSRNOT00000087575 3 1 1 95 6 28236835 28236854 GCTGTCACATTCACACTCAG 59 28236912 28236931 CAAGACAACGGAGCAATGG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058095 ENSRNOT00000086319 3 1 1 67 4 116894071 116894089 TGTAGGTGTGGTGCTATCC 59 116894022 116894042 ACACTGTAGACATAGCTTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061125 ENSRNOT00000088230 2 1 1 60 4 177070708 177070726 TCGGTCAAGGGTATACGAG 58 177070666 177070685 CTTGAGAGCTTGTTTGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052849 ENSRNOT00000086526 2 1 1 61 4 102979220 102979241 TATCAGTGGTGTATCACATGTG 58 102979180 102979199 GGGCAGACATAGTGTTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000051400 ENSRNOT00000081216 2 1 1 60 1 31443476 31443496 AATTCTAAGAGTGGTGCCTCC 60 31443518 31443536 AACTCACCTCTCCACTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035561.2 ENSRNOG00000051906 ENSRNOT00000081310 1 1 1 81 12 19680889 19680985 CATAGCTCAGATCCAGGACTC 60 19681028 19681046 CTGAGGTTCCCAAGATCCC 60 Novel Rattus norvegicus 81 U1 ENSRNOG00000060441 ENSRNOT00000085071 3 1 1 67 2 198623817 198623835 TTATCCATTGCACTCCGGA 59 198623866 198623884 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058504 ENSRNOT00000091658 3 1 1 61 10 57329904 57329925 AACAATGCAGAGATTAGCATGG 60 57329945 57329965 TGGAAGCTGCATGAATTTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053414 ENSRNOT00000089256 2 1 1 60 4 168916192 168916212 GTTGTCATTTGCACCAGTAGG 60 168916230 168916252 AGAACACTGAGGATAGACATAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052355 ENSRNOT00000089150 1 1 1 60 7 18641155 18641174 TTCGGTCAAGGGTATACGAG 59 18641114 18641132 TTGAGAGCTTGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013147.1 ENSRNOG00000053852 ENSRNOT00000077434 2 1 1 62 2 224712888 224712906 GATGTTGCTTCTGTCTCCT 57 224712931 224712950 GGAAGACTGATGTTCATGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030777.1 ENSRNOG00000059694 ENSRNOT00000091877 2 1 1 60 10 104000525 104000543 TCTGTCGGTGTTGTTATGC 58 104000483 104000502 TATTCGTGGTGTCTGGAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008298.2 ENSRNOG00000061553 ENSRNOT00000087865 1 1 2 84 2 52569789 52609297 TCCAATGGGTTGAGAGCTG 60 52569723 52569741 CTCTGGAAGACCTCAGTGC 60 Novel Rattus norvegicus 81 AABR07039210.1 ENSRNOG00000057427 ENSRNOT00000079834 1 1 1 73 X 71961312 71961332 CTAAGATTCTGGTTCCAGGG 57 71961365 71961386 TGTCTTCCTTTATGGACTACTG 57 Novel DesignRelaxed Rattus norvegicus 81 SNORA17 ENSRNOG00000052797 ENSRNOT00000089020 3 1 1 61 8 95543709 95543727 CACTGTGTCACATGTGCAC 60 95543666 95543686 CACTGAGCATAAACAAAGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060238 ENSRNOT00000078722 3 1 1 62 8 126487477 126487496 CATGCCAACCAGAAGTACAC 59 126487434 126487455 CAAATGGTTGAGTTATCCTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072773.1 ENSRNOG00000041322 ENSRNOT00000063075 3 1 1 60 2 207559730 207559748 GAGGCTTAAAGCCCTAAGC 58 207559688 207559706 CCAGCTTAGAAAGCAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053525 ENSRNOT00000080130 3 1 1 60 2 224903686 224903705 TGTTCCACTGCTAGAACCTC 60 224903728 224903746 AGAAACACCATGACCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA28 ENSRNOG00000053220 ENSRNOT00000083113 1 1 1 60 2 153754555 153754575 ACTGTCTGACACAATTTGAGC 59 153754515 153754534 AGAGAACACCGGAATAGGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016779.1 ENSRNOG00000052764 ENSRNOT00000083199 2 1 1 77 14 114047342 114047365 GAGTGCAAGATAGAGTATGAAGAC 59 114029243 114029261 CTTGATTTCATGCATCCGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07004756.1 ENSRNOG00000058731 ENSRNOT00000080976 3 1 1 62 1 154627182 154627203 AAGATCAAGTGTAGAAAGCGTG 59 154627226 154627244 GGAAAGCATGGAGTGTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027009.1 ENSRNOG00000041433 ENSRNOT00000063186 3 1 1 60 17 10572352 10572370 CTGCTCATTTCCCTATCCC 57 10572310 10572328 TACTGAGTGCTTACCAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057783 ENSRNOT00000078669 1 1 1 60 2 48263852 48263876 GGTGACAATCTAGCTGTAATATCTG 59 48263893 48263912 GATCATCTGGAGAAACCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057783 ENSRNOT00000078669 2 1 1 60 2 48263860 48263881 TCTAGCTGTAATATCTGTCACC 57 48263902 48263920 AATCGCCAGATCATCTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA51 ENSRNOG00000053757 ENSRNOT00000082756 1 1 1 60 3 122805523 122805543 ATAAACTACCCTGTGTACACC 57 122805564 122805583 CCCATTCACAATACAGACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500473 ENSRNOG00000046529 ENSRNOT00000075994 3 1 1 81 5 77341446 77341467 AGTGCAGGGAACTATATTTGGT 60 77340698 77341408 AATGTATTCCCTCCGTCATACTC 60 Novel Rattus norvegicus 81 Chd9 ENSRNOG00000049302 ENSRNOT00000075970,ENSRNOT00000078786 3 2 4 89 19 17397469 17399494 GATATAGAGGATGACGTTTCTTCC 59 17396114 17396132 AGGCCAGTACACTTTGTCC 60 Novel Rattus norvegicus 81 AABR07063601.1 ENSRNOG00000051657 ENSRNOT00000077176 2 1 1 83 6 36889042 36889064 ACAAGGACACTCATCGGTG 60 36888977 36888996 CTAGAAAGGAAGGTTTGCGG 59 Novel Rattus norvegicus 81 AC131024.1 ENSRNOG00000058001 ENSRNOT00000082630 3 1 1 80 3 170299189 170299279 ACAGCCTACACTACGTACAC 59 170299318 170299340 GTAGGCTGTAGTGTAGTATAGGC 60 Novel Rattus norvegicus 81 Rab37 ENSRNOG00000059793 ENSRNOT00000086469 3 1 1 80 10 103710037 103710055 CCCTTCATGGAGACCAGTG 60 103710098 103710240 GCGATATTTCAGCTCCTTGG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054556 ENSRNOT00000082827 3 1 1 60 3 27527426 27527445 CTATGTCACATGTGCGTCAG 59 27527466 27527486 AACACAAGCATAGACATAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041999 ENSRNOT00000063752 3 1 1 60 1 141753526 141753544 TTCCTCTAGTCTCGGAAGC 58 141753484 141753504 GTTTACTCCCATCTTTGGACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_15_0408.6 ENSRNOG00000061152 ENSRNOT00000078051,ENSRNOT00000090573 2 2 2 80 15 36878958 36879185 CATTGTACACAGGCATCCC 59 36879226 36879247 CTTCTGAAGCTCTGTAGTTGAC 59 Novel Rattus norvegicus 81 AABR07004960.1 ENSRNOG00000053648 ENSRNOT00000090018 1 1 1 60 1 172822808 172822829 GAAACATTTATCCTTGTGGCTG 58 172822849 172822868 ACCCAAATGTCACTACAGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07009397.1 ENSRNOG00000011827 ENSRNOT00000015746 3 1 1 60 2 96032193 96032212 ATGGCTATGTTGATGCTACC 58 96032152 96032172 GTGAATTGCAGACATTCATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055989 ENSRNOT00000083142 1 1 1 64 10 58429084 58429102 GTGTCAGTAGGTGGCAGAG 60 58429038 58429062 GATGTTTGTAGGTCAGAATAGTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056155 ENSRNOT00000081932 2 1 1 60 2 68252026 68252047 GATAGAACCTCCAAACAAGCTC 59 68252066 68252086 TCTCAAATCTAGAGCAACTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057603 ENSRNOT00000090692 3 1 1 60 1 82084760 82084778 AGAAGATTAGCATGGCCTC 57 82084801 82084820 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC136795.1 ENSRNOG00000061236 ENSRNOT00000084043,ENSRNOT00000092119 3 2 2 80 10 4491664 4491684 TATTGCTGATGAACGAATCCG 59 4491722 4491827 GATACTGGAACTTTCTTCCTCTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000059256 ENSRNOT00000083460 1 1 1 60 2 34483460 34483478 GAGAAGATTAGCATGGCCC 58 34483418 34483436 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000055743 ENSRNOT00000086670 2 1 1 60 10 74765418 74765441 CGTTACTAGAGAAGTTTCTCTGAC 59 74765460 74765478 CTATGTCTCGTCCTCGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC123251.1 ENSRNOG00000039721 ENSRNOT00000060915 3 1 1 64 4 15698003 15698021 ACATGGAAACAACCCTGGA 59 15697955 15697973 GGTGAAGCTTGCATCTACG 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_7_1407.2 ENSRNOG00000055573 ENSRNOT00000082729 3 1 1 83 7 142890324 142890806 TGCGACTAAAGGAAGGGAG 59 142890259 142890278 GTTTGACCTGAGCATTCTGG 59 Novel Rattus norvegicus 81 uc_338 ENSRNOG00000057577 ENSRNOT00000089803 2 1 1 72 3 25202935 25202954 TACAGTCCAGGTACATAGGG 58 25202882 25202900 TTTAGGTAGATGGGCGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058811 ENSRNOT00000080131 2 1 1 61 17 70657695 70657716 AACGATACAGAGATTAGCATGG 58 70657736 70657756 GGAATGCTTCACGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044645 ENSRNOT00000069912 3 1 1 61 2 253549413 253549431 GAATGTGCCAGATCTTGCC 59 253549370 253549389 TCCATTACAAACCATGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039471.1 ENSRNOG00000047231 ENSRNOT00000075097 1 1 1 83 X 77654997 77655015 TTCCTTTCTTCAGGTTGCC 58 77654930 77654953 ATTATCATCTCGTACATCCCAG 57 Novel Rattus norvegicus 81 AABR07057675.1 ENSRNOG00000054487 ENSRNOT00000088893 1 1 1 81 7 83701187 83701205 TCCAACACAAGCCTCTAGG 59 83682332 83701144 CAAATCCATCGTTTCCTTTGC 59 Novel Rattus norvegicus 81 AABR07069011.1 ENSRNOG00000055895 ENSRNOT00000089124 2 1 1 80 8 5201991 5202011 CACCACTAACATTCGAAAGGG 59 5201727 5201949 AAAGGTCACCATGGTCTCC 59 Novel Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000060346 ENSRNOT00000088659 2 1 1 60 14 112298875 112298895 TTACTCAGTAAATGGCTACCC 57 112298835 112298855 TACATCTGTTCAGACAGGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053573 ENSRNOT00000078335 3 1 1 65 17 51029034 51029057 GATTAACTAGGTAGATCTGACCCT 59 51029081 51029099 TTACAGCTTCGGGAAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA50 ENSRNOG00000052898 ENSRNOT00000083117 2 1 1 60 14 21268222 21268241 CTTTGCTGGAGCATAACTGG 59 21268181 21268201 TAGCTAGCAGTTAAAGGGACG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016975.1 ENSRNOG00000053595 ENSRNOT00000077659 2 1 1 80 15 5652368 5652386 TTGTGAACTGCAAGTTCCC 59 5652304 5652329 GATTTCTTGGGTCTTTCTGATAGG 59 Novel Rattus norvegicus 81 AABR07029696.1 ENSRNOG00000061797 ENSRNOT00000078935 1 1 1 80 10 44947130 44947148 CAACATCACACTGGTCCAC 59 44947067 44947088 ATCATGTCGATACTGAGGAGG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000053823 ENSRNOT00000078198 2 1 1 61 2 244937718 244937736 GAGAAGATTAGCATGGCCC 58 244937760 244937779 AAATATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030378.1 ENSRNOG00000060404 ENSRNOT00000080001 1 1 1 110 10 83313350 83313369 AATGTCCCAATCTCCCACC 59 83313441 83313462 CAACAGACAGGTTTAATCTCCA 58 Novel Rattus norvegicus 81 SNORA84 ENSRNOG00000053824 ENSRNOT00000087965 1 1 1 60 17 15400576 15400594 TGCCAGTACAGTTCTCCAG 59 15400534 15400554 CCCATGCATAAATCAAAGGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC117925.8 ENSRNOG00000061902 ENSRNOT00000079376,ENSRNOT00000084381 3 2 2 86 4 114818608 114818768 TATGAACTCTGGTGGTTCTG 57 114818541 114818559 GAGTTTAGCTCTTCGGTGG 58 Novel Rattus norvegicus 81 U3 ENSRNOG00000052744 ENSRNOT00000086241 1 1 1 60 2 146467031 146467052 TTTGCCATTGATGATCGTTCTC 60 146467073 146467091 ACTCAGACTGTGTTCCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017197.1 ENSRNOG00000048492 ENSRNOT00000070931 1 1 1 113 15 17096229 17096249 TGGACCAGAGAAACACCTC 59 17096134 17096158 GTCTCCCTTTATATGTTACTTGACC 59 Novel Rattus norvegicus 81 SNORA44 ENSRNOG00000057361 ENSRNOT00000085324 2 1 1 60 14 97920927 97920945 CATGGGATCTCCAACTGCA 60 97920969 97920987 TGTGATAACCTGGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098008.2 ENSRNOG00000059027 ENSRNOT00000082961 3 1 1 84 1 167673268 167673286 CCTCCACATCAAACCAGAC 58 167673334 167673354 CAGGAAATTTCCAGTGCCC 59 Novel Rattus norvegicus 81 SCARNA3 ENSRNOG00000052521 ENSRNOT00000086149 3 1 1 62 1 53236728 53236748 CCAGCCATGTAGACAAATGAG 59 53236686 53236704 TTTATGTGGGACTGTTGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA27 ENSRNOG00000058033 ENSRNOT00000081251 2 1 1 64 12 9997686 9997704 TCATTGGCCATTCAAGTGG 58 9997640 9997661 CAAACACTTAAGTTTGCCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061057.2 ENSRNOG00000056830 ENSRNOT00000086338 2 1 1 60 4 103331062 103331080 CAGTAGAGTGAGGGCTGAG 59 103331020 103331039 AGGATACTCTCGAACTTGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055396 ENSRNOT00000078801 2 1 1 60 14 43145702 43145722 ATACAGAGAAGGTTAGCATGG 57 43145743 43145762 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA26 ENSRNOG00000056287 ENSRNOT00000080374 1 1 1 60 14 36664777 36664796 AAGGGTAAAGGAAGTCTCCA 58 36664736 36664754 AGGATCCAAAGAGGAGGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060672 ENSRNOT00000081361 3 1 1 60 14 113503205 113503225 GTTACATGTACGTCAGTTGGT 58 113503165 113503183 CAGAACACTGAGCATAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115159.1 ENSRNOG00000040383 ENSRNOT00000062136 1 1 1 60 10 35858130 35858150 CGTATCCATCTTTGAGGTCAC 59 35858090 35858109 AACTTGCAAGGAATGTCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061336.3 ENSRNOG00000059023 ENSRNOT00000083216 2 1 1 61 4 116935985 116936003 CAGTTTCTGGGCTGAAGTC 59 116935942 116935962 GACTGCAGAAGTTGAATTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA57 ENSRNOG00000055902 ENSRNOT00000085824 3 1 1 60 14 17380809 17380828 GTATGAAGCACAAGGAGAGG 58 17380768 17380786 ACAGGTACCAAAGACATGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063516.1 ENSRNOG00000060052 ENSRNOT00000083144 2 1 1 99 6 33080627 33088533 GTACAGCAGTTGTTGTAAATGG 58 33080549 33080570 GAATGTCCTTAGGAAGACACTC 58 Novel InUTR Rattus norvegicus 81 SNORA61 ENSRNOG00000057591 ENSRNOT00000082778 1 1 1 65 2 165813967 165813985 ATCAGACCTTGCTGCTGAG 60 165814014 165814032 TACATCACTGTGAGGCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054619 ENSRNOT00000079500 1 1 1 60 10 33892523 33892541 ATAGATGTGGTTGCTCTGC 58 33892560 33892583 CACTGATCATAGACATAACCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0046.5 ENSRNOG00000059825 ENSRNOT00000086128 3 1 1 60 20 2489398 2489418 GTATTACCCATCACCTAGCAC 58 2489358 2489382 GACACTGAAGTAGATTAAATGTCCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000055517 ENSRNOT00000087941 1 1 1 60 1 56863003 56863025 GACTACAGAAAGTCTAGAACAGG 58 56862965 56862984 AAGCATGGATCAATTCAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060227 ENSRNOT00000087216 1 1 1 60 1 53435023 53435042 CTGGAGTGGATGATCCTGAG 59 53434982 53435000 AAATTTGCGTGTCATCCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0046.4 ENSRNOG00000057666 ENSRNOT00000086191 3 1 1 60 20 2492375 2492396 GATCTGGAGAACTTCTGAACAC 59 2492336 2492358 GAAGCTAGTACAAAGTTTCTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059438 ENSRNOT00000087823 3 1 1 60 1 84992331 84992352 AATTAAAGGGTTCAACCTCTCC 58 84992292 84992310 CTTTCCTCTTCCACGACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000036145 ENSRNOT00000054268 3 1 1 60 14 89011312 89011330 CCCGATCTCGTCTGATCTC 59 89011354 89011372 TCCCAGCCAAGTACTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061065 ENSRNOT00000086781 2 1 1 60 14 7685757 7685775 GGGTTCGTCTGTCTAGGTC 59 7685715 7685733 AGAAAGGCCAGAGTCTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC118802.1 ENSRNOG00000057672 ENSRNOT00000089658 1 1 1 80 13 113764013 113764032 TATTTGTCCTCTGCTTTGGT 57 113764075 113764095 GAGCCAAGAATTATTGCCG 57 Novel Rattus norvegicus 81 AABR07015814.1 ENSRNOG00000043857 ENSRNOT00000069124 3 1 1 79 14 78549354 78549372 CCTTGTTGGAGGAAGTGTG 58 78549415 78549433 AAGCGAGAGTGACACTAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096353.1 ENSRNOG00000050136 ENSRNOT00000073324 2 1 1 60 1 256453689 256453707 GCCAAAGCCTTAGACAAGC 60 256453731 256453749 CCTCATCACAGTTGGATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005838.2 ENSRNOG00000054087 ENSRNOT00000089033 2 1 1 61 1 202829580 202829598 TCCAAGGCTGTCTGTTCTC 59 202829623 202829641 TGCTGTTGGTAACAGAGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056124 ENSRNOT00000085789 1 1 1 74 14 35163207 35163228 CAGCATATACACTACGATTGGA 58 35163263 35163281 TAAATTTGCATGCCCTGCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056124 ENSRNOT00000085789 3 1 1 75 14 35163207 35163228 CAGCATATACACTACGATTGGA 58 35163263 35163282 ATAAATTTGCATGCCCTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017236.1 ENSRNOG00000057837 ENSRNOT00000092092 3 1 1 80 15 18950656 18963168 CCTCAGATGACTTTGCAGG 58 18963212 18963230 ATGTGCCATTCTTGCAGAG 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058905 ENSRNOT00000082661 3 1 1 60 4 177714456 177714476 AGGCTATGTCTACATTCAGTG 57 177714416 177714437 AATGTCGGGCTATTAACATTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053316 ENSRNOT00000091153 1 1 1 60 1 208831029 208831047 GTTGACTTGGGTCATCTGG 58 208830987 208831005 ACATGGAGTGGTGACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA4 ENSRNOG00000055118 ENSRNOT00000086485 1 1 1 60 2 188059523 188059542 GCAAGACTTTGCTGATACAC 58 188059565 188059583 TCCAATAAGGGCTGCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060415 ENSRNOT00000082959 1 1 1 60 4 176244870 176244891 TTGCAAGTATAGCTGCTATGTC 59 176244911 176244930 TAGACATGGCCTCTTAGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_1411.1 ENSRNOG00000053703 ENSRNOT00000089765 2 1 1 106 7 143291048 143291170 CAGTCAACATCTCCGTGGT 60 143290960 143290978 ACCATAGGAGAAGCTGCTG 59 Novel Rattus norvegicus 81 SNORA3 ENSRNOG00000053310 ENSRNOT00000077444 2 1 1 60 4 183450206 183450225 GAGTCTTGATTCACTGGTGG 58 183450248 183450266 TATGTTTCTGGTCTGGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000059280 ENSRNOT00000079657 3 1 1 62 5 136071242 136071263 CAGATCGTATAAATCTTTCGCC 58 136071284 136071304 AGACTCAGAGTTGTTCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047835.1 ENSRNOG00000023101 ENSRNOT00000038090 3 1 1 80 5 49821972 49821991 CAGACCTTATGGCATACAGG 58 49822031 49822054 TAATGTCAATCAGCTCCTTCAC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000061878 ENSRNOT00000084338 3 1 1 61 2 196541111 196541129 AGAGAAGATTAGCATGGCC 57 196541154 196541172 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056949 ENSRNOT00000090093 3 1 1 60 1 75450349 75450369 TGTACCTGACTAATCTTGGTG 57 75450388 75450409 TGTATAGAGGAGATAGGGAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014239.1 ENSRNOG00000057207 ENSRNOT00000050446 3 1 1 60 14 5837836 5837856 CTTAAGATAGAGTGTGGGCCT 59 5837875 5837896 TTGTTACAAATCTCACAGACGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054674 ENSRNOT00000091274 1 1 1 60 2 1587403 1587423 ATACGGAGAAGATTAGCATGG 58 1587444 1587463 GGAACACTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA15 ENSRNOG00000059209 ENSRNOT00000080079 3 1 1 60 10 104714041 104714059 AGACTCTGCCGATACACTC 59 104713999 104714018 TTTCTCAGTAAGGGCTGCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056864 ENSRNOT00000081238 1 1 1 69 1 261223205 261223224 AGTCTTTGAGTTCACTTGCT 57 261223256 261223274 ATGTCATCCTTGCATAGGG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC099150.1 ENSRNOG00000052397 ENSRNOT00000078137 3 1 1 87 1 102924067 102924087 TCTACTGCGTTGGAGTCTG 59 102924139 102924158 CTTGGCTCTATAAGCGTCTG 58 Novel Rattus norvegicus 81 AABR07072639.1 ENSRNOG00000054284 ENSRNOT00000084366 2 1 1 67 19 37021308 37021486 TTTCAGCTAGCAATGGCAC 59 37021259 37021281 CGAGTCTTTATAAGCCAAATGGG 60 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000053389 ENSRNOT00000082434 1 1 1 61 5 42557964 42557985 GCACTGAATATAGTAAACCAGC 57 42558005 42558025 GGGAACAGGAATATAGTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141172.1 ENSRNOG00000061735 ENSRNOT00000083818 3 1 1 80 17 70656040 70656059 TTTGATTCTGTTGGCTGCA 58 70655977 70655995 TTGGTTTGCATTGTGGTCC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000050757 ENSRNOT00000073405 1 1 1 60 12 25307577 25307597 TATCTCAGAAGCTAAGCAGGG 59 25307537 25307557 CTAATACTTCCTGGGTGTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073021.2 ENSRNOG00000057061 ENSRNOT00000089432 1 1 1 61 4 82228992 82229010 CACCTCTGGAAGTCCACTC 59 82228225 82228243 CTATAGGAGCTGGCGTCTG 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000059273 ENSRNOT00000079541 1 1 1 70 1 189735807 189735825 ACAGAACGGAGAAGATCGG 59 189735859 189735877 AATACTGGGAAGCACCCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061801.2 ENSRNOG00000060820 ENSRNOT00000083660 3 1 1 80 4 144917119 144917156 AGAAATCAGGAAACAACCCTG 59 144917196 144917216 CTTGTATTCTGTTGGTGATGC 58 Novel Rattus norvegicus 81 ENSRNOG00000056694 ENSRNOT00000081054 2 1 1 60 1 37988434 37989890 AACCTTGTGTTCCTGGGAC 60 37988392 37988410 TTTGCTCCAGAAACGTCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014739.1 ENSRNOG00000057494 ENSRNOT00000087499 1 1 1 60 14 29232339 29232362 GAGAAGAGGATGAGTCTAGAATGG 60 29232302 29232321 CCACATCTCATACCCACTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072371.1 ENSRNOG00000002200 ENSRNOT00000002990 2 1 1 60 14 10625026 10625045 GGACATTCCAATACCCAACC 59 10625067 10625086 CATCAGAGGGAGTTCTGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000057261 ENSRNOT00000080414 1 1 1 60 1 70101731 70101751 TCATCAATATGGTGATCTCCC 57 70101773 70101791 GTTCACCTCTCCTTAGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017564.1 ENSRNOG00000053129 ENSRNOT00000091011 2 1 1 80 15 27091011 27091031 CCACTGTCATGAGTAGAGC 57 27091074 27091093 CCCTGAATAATGGAGTGAGC 58 Novel Rattus norvegicus 81 SNORD113 ENSRNOG00000061433 ENSRNOT00000079463 1 1 1 63 6 133753221 133753240 CCAGTGATGAGAATTCTGGG 58 133753266 133753284 GACCTCAGAGTTACAGGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044505 ENSRNOT00000069772 1 1 1 60 14 34698463 34698484 CATCTCATCTGATCTTGGAAGC 59 34698503 34698523 CTCTCCCACTCAAGTACTGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000059449 ENSRNOT00000082659 2 1 1 60 10 59151747 59151765 TTGAGTCCAGGAGTTCTGG 59 59151789 59151807 AGAACTTAGTGCGGACACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0828.3 ENSRNOG00000051139 ENSRNOT00000076171 3 1 1 70 13 77850548 77850568 GTGAAGAGAAGACACCAAGAG 58 77850600 77875993 AAACCCAGCTTCCAAATGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07015078.1 ENSRNOG00000055956 ENSRNOT00000085875 3 1 1 61 14 46650295 46650313 AGAGGGTGTAAATCTCGCG 60 46650338 46650356 CTGTTCACCTTGGAGACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000058531 ENSRNOT00000083854 3 1 1 61 1 116751248 116751269 GACAACAGAAAGTCAAGAACAG 58 116751208 116751227 TCAGCGTAATCCTATTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059132 ENSRNOT00000088699 1 1 1 60 3 139747579 139747597 CAGAGGCATAATAGGTGGG 57 139747537 139747556 TAGATACAGCCTGTCTCCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060215 ENSRNOT00000090363 2 1 1 60 1 207364593 207364613 ACATGTGAGTCAGTAGTAGCA 59 207364553 207364573 AGGTCAGAGCACTGATTACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Txnl4a ENSRNOG00000052004 ENSRNOT00000089487 2 1 1 65 18 76737341 76737359 GAGCTCTATGACCCATGCA 59 76740331 76740351 GCCCAAATCAATCATGATGTG 58 Novel DesignNoJunction Rattus norvegicus 81 SNORD62 ENSRNOG00000060627 ENSRNOT00000086225 2 1 1 60 3 11243827 11243848 GTTCCAATAGATCCTTCTGACC 58 11243868 11243887 CTGTCCTCTTCATCTCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029956.1 ENSRNOG00000056777 ENSRNOT00000077529 3 1 1 80 10 61152830 61152852 TCATACATACACTCATGACCAG 58 61152771 61152790 GGAGGACGTACATTTCACAG 58 Novel Rattus norvegicus 81 AC131475.1 ENSRNOG00000049632 ENSRNOT00000074541 1 1 1 60 1 221360469 221360487 GCCTTGAACTCAGAGATCC 58 221360427 221360445 GTGCATGCCTTTAATCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA23 ENSRNOG00000056552 ENSRNOT00000080847 2 1 1 60 1 228378576 228378594 TCAGTCCTTCTCTTGTGGT 58 228378618 228378636 CCAACCAGTCCAGATTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0742.1 ENSRNOG00000051134 ENSRNOT00000076427 2 1 1 84 X 73370315 73370333 ATAGCCAAGAACTTGCCTG 58 73370379 73371454 GGCCAGTTAACAGTATCAAGG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000058230 ENSRNOT00000085268 3 1 1 60 2 205576876 205576894 CTGACTGGATGGGTGTCTC 60 205576917 205576936 CAACTCAGGGAATGACACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC106505.1 ENSRNOG00000042948 ENSRNOT00000067348 2 1 1 82 1 169160103 169160131 GTTCATACTGCTCTCCATGAG 58 169160041 169160059 AGTGTGGACACAGAGACTC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000059829 ENSRNOT00000088708 1 1 1 60 10 20434382 20434401 CTGGCAAAGGTGTAACATCC 59 20434422 20434442 CCACATCAGTAGAATCAACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC124926.2 ENSRNOG00000059506 ENSRNOT00000084156 2 1 1 80 X 128182886 128182909 GAGATTTCACCTCACATGCG 59 128182951 128182970 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 AABR07028795.1 ENSRNOG00000061514 ENSRNOT00000078827 1 1 1 60 17 86657387 86657408 AAAGATAAAGGTGGACAACCAC 59 86655452 86655470 AAACTTGAAATGGCTCGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035641.1 ENSRNOG00000057141 ENSRNOT00000091323 3 1 1 105 12 20599582 20659186 CATTCATGCTCTCATTACTACCC 59 20599499 20599517 CAGCAGTGAAGGAGTCCTC 60 Novel Rattus norvegicus 81 AC141028.3 ENSRNOG00000055364 ENSRNOT00000081389 3 1 1 80 X 5691106 5691129 AGATTTCACCTCACATGCGA 60 5691170 5691190 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000057431 ENSRNOT00000090249 2 1 1 67 2 186408837 186408855 GTGTCAGTAGGTGGCAGAG 60 186408884 186408904 ACTCAGATGTTCATTGGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055969 ENSRNOT00000078443 1 1 1 60 6 115712287 115712305 ACAAAGCCCTCAAAGTCCA 60 115712245 115712264 TTCGATCAACATTACTGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098750.1 ENSRNOG00000053928 ENSRNOT00000085305 2 1 1 88 2 188762104 188762122 TTTGTTCGCACCTGTTACC 59 188762174 188762194 GAGAAGAACAAGGATGGGC 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000052261 ENSRNOT00000086384 1 1 1 60 7 36004983 36005003 TCATTGATTGCCAGAGTTGAG 59 36005025 36005043 GGAGGAAGAACAGGACCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042792.1 ENSRNOG00000060310 ENSRNOT00000083521 3 1 1 147 19 9112634 9112652 CATCATCTCTGCTGAGGGT 59 9112763 9112784 CAGGGTGATGTTCCGAGAG 60 Novel DesignNoJunction Rattus norvegicus 81 LOC103690910 ENSRNOG00000052269 ENSRNOT00000086405 1 1 1 60 X 139329786 139329805 AAAGAAGTATGAAGCCCTGG 58 139329745 139329764 GTTTCTCATTTCACGTTGGT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060792 ENSRNOT00000089461 1 1 1 60 6 63954003 63954022 TTGACTTGACTGATCTGGCT 59 63953962 63953983 GGAGAACATACATGAGAAAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1340 ENSRNOG00000053238 ENSRNOT00000079362 1 1 1 60 8 43969730 43969751 TCATTTCATACGGGTTCATCCT 60 43969691 43969710 GACCTGCCCTCTTTAGAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363178 ENSRNOG00000043375 ENSRNOT00000085178,ENSRNOT00000021288 3 2 2 96 2 208550250 208550269 CGTTTGTGTACTGATTAGCG 57 208550328 208550854 TTTGCCAGTAACTCCTCTG 57 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000054036 ENSRNOT00000084215 3 1 1 83 5 138029498 138029516 TGTTCTTAGAGCCACTGCA 59 138029563 138029581 AGGGCAGACACAACTTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000051409 ENSRNOT00000083073 1 1 1 60 1 143065412 143065430 AGAGACTTTGACAGCCCAG 59 143065370 143065389 AACATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD116 ENSRNOG00000060200 ENSRNOT00000080019 2 1 1 65 1 194979942 194979962 CTCAGTCAAACATTCCTTGGA 58 194979897 194979915 GATGACAATAGCGGTGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000052215 ENSRNOT00000091709 2 1 1 62 6 87098939 87098957 AAGAGACTCCTTGGTGGTG 59 87098983 87099001 TGAACTGCCATCTTCTCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029198.1 ENSRNOG00000056896 ENSRNOT00000081217 2 1 1 81 10 12947539 12947834 CGAAAGGACCACAAACACG 60 12948113 12948132 TTAGAACTGTCACCACAGGG 59 Novel Rattus norvegicus 81 Y_RNA ENSRNOG00000060430 ENSRNOT00000086005 2 1 1 60 4 77463099 77463122 CACAGTCAGTTACAGATTGAACTC 60 77463062 77463081 AAGTGCAGTAGTGAGAAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025301.1 ENSRNOG00000060395 ENSRNOT00000082590 3 1 1 102 16 32509993 32510013 CAGAGCCTGAAGAATTTGTGG 60 32509748 32509929 CTTGTCAGCACTGTGAACC 59 Novel Rattus norvegicus 81 AC114460.1 ENSRNOG00000025003 ENSRNOT00000032429 2 1 1 61 1 142027779 142027799 TTCCTAAGGCTGCTACCTG 59 142027824 142027842 TGCTGGCTCAGTAGTACAG 59 Novel DesignNoJunction Rattus norvegicus 81 Adora3 ENSRNOG00000050743 ENSRNOT00000082943 2 1 1 80 2 208373761 208373780 CTTCCATCATGTCCTTGCTG 59 208373818 208375728 TGGTAACCGTTCTATATCTGACTG 60 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000057528 ENSRNOT00000090734 1 1 1 60 1 210082675 210082699 GTTTGAGACTACAGTGATTTAGAGG 59 210082717 210082735 TGGTGCTGAACTTAGTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000057528 ENSRNOT00000090734 2 1 1 60 1 210082732 210082751 ACCATGATAGTGACCTTCCA 58 210082773 210082792 CAGTTCACCACTCCTTACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057276 ENSRNOT00000087010 1 1 1 60 2 62094690 62094710 ATACAGGGAAGATTAGCATGG 57 62094730 62094750 GGAACCCTTCATGAATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA20 ENSRNOG00000060473 ENSRNOT00000087310 3 1 1 60 1 274674901 274674921 AGTGATAGGAGCGGTTATACG 59 274674942 274674961 CATCTCCGTGTACAATAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021584.1 ENSRNOG00000041572 ENSRNOT00000063325 1 1 1 60 13 79425268 79425288 AAGGACATTGGAAGAAAGCAG 59 79425228 79425246 TGCTCAATCTCACAAGGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061001.2 ENSRNOG00000055869 ENSRNOT00000082926 1 1 1 60 4 102514759 102514778 AGTTACTGTCTGCATCTCTG 57 102514801 102514819 ATACTCTCGCTTGTCCTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044576 ENSRNOT00000069843 1 1 1 60 1 129014456 129014474 TAAACATGCCCAGTCTCGT 59 129014414 129014432 ACATACTAACCAGGCCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055045 ENSRNOT00000080937 1 1 1 60 1 260993739 260993757 TGCACCTGAAGAGAATGAC 58 260993781 260993799 GCTCCAATAGAGGAACCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000054191 ENSRNOT00000089688 3 1 1 65 1 228362699 228362717 CATTTGCTGTGGACATGAC 57 228362744 228362764 GCTAGTCAAGTAGCATATGGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055296 ENSRNOT00000080947 3 1 1 60 4 93878945 93878963 ACCTACAGGTAAAGCAGGT 58 93878903 93878922 CTCTTCTATGCCACCTACTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052404 ENSRNOT00000086677 1 1 1 60 20 39121399 39121419 GCATTGTAAATGGAGTTGCTG 59 39121359 39121378 AACAGGTAAATGTCACCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115509.1 ENSRNOG00000049126 ENSRNOT00000071441 2 1 1 118 2 78633786 78633804 AAGACTCCCAGCTCAAAGG 59 78633883 78633907 GTCCAATCTATTTGGTCTGTAGG 59 Novel Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000054248 ENSRNOT00000089641 1 1 1 60 20 20175368 20175388 TCATAGCTTCAGCTATGACAG 57 20175328 20175346 CTGTATAACCCAGGAGCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051902 ENSRNOT00000088911 3 1 1 60 13 57583413 57583431 GATACCGTGATCACGAGGG 60 57583371 57583389 ACATCCAGAGTGCAATGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053475 ENSRNOT00000085627 3 1 1 63 3 61498751 61498772 GGAACGATAGAGAAGATTAGCA 58 61498709 61498727 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044089.1 ENSRNOG00000019773 ENSRNOT00000026767 2 1 1 80 19 57663761 57663780 GTACGCAATAACCGTTTGGT 59 57662321 57663719 ACACCTTTCTCACCTGTGAG 60 Novel Rattus norvegicus 81 AABR07072916.1 ENSRNOG00000061523 ENSRNOT00000085319 2 1 1 60 3 112916615 112916635 GGTGAATGTCGGATATCTGTC 58 112916575 112916596 CCTGACTCAGATAATGTGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060734 ENSRNOT00000085272 2 1 1 60 13 27326628 27326647 AGGTAATGAGGCTGTATCCT 58 27326587 27326606 TAGACATGCCATTTCTCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052663 ENSRNOT00000086940 1 1 1 64 2 97060876 97060894 CTAATTTGGAACCCGAGGG 58 97060830 97060848 AATTTGCGTGTTCATGCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD53_SNORD92 ENSRNOG00000060589 ENSRNOT00000086222 1 1 1 60 6 23448740 23448759 GCTGTGATGACTTTCATTGG 58 23448699 23448718 CAAGAGAAGAGGCATCATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC134009.1 ENSRNOG00000053038 ENSRNOT00000090744 2 1 1 74 19 55510476 55510496 GAAAGAACAGGAGGACGTG 58 55510534 55510554 CTGGCTGCAGTGACTAGAG 60 Novel DesignRelaxed Rattus norvegicus 81 pRNA ENSRNOG00000053483 ENSRNOT00000091120 1 1 1 61 20 56182822 56182840 TACCAGGCATGACTTCCAG 59 56182779 56182797 CAATAACGGGACAGGGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058188 ENSRNOT00000080426 2 1 1 60 13 65681961 65681982 ATGACACAGAGATTAGTGTAGC 58 65682000 65682021 TAGGACCCTTCCTAAATTTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000045206 ENSRNOT00000070473 3 1 1 60 6 121315990 121316009 TTCAGAAGCTAAGCCAGGTC 60 121315949 121315973 GATATTCCAAGACAGTATCCTATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000060385 ENSRNOT00000079851 1 1 1 60 7 140139265 140139283 CTGTTGGTTTCAAGCAGGT 59 140139223 140139241 TCTGAAATGGCCAACAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061840 ENSRNOT00000083001 3 1 1 64 14 49391769 49391787 ATAAGAGTAGCTCCCTGCT 57 49391813 49391833 ACCCTACATTCCTACAATGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000047655 ENSRNOT00000071216 2 1 1 116 3 18805261 18805436 TTTCACACTATTCACAGTGTCC 59 18805513 18805531 TTTACACTTGAGCTGGCAC 58 Novel Rattus norvegicus 81 AABR07017855.1 ENSRNOG00000053749 ENSRNOT00000092202 3 1 1 80 15 31895260 31895460 TCCAATTAAACTGGGTGAGC 58 31895503 31895521 AAGCTATGGATCCCTCTGG 58 Novel Rattus norvegicus 81 AABR07049554.1 ENSRNOG00000043738 ENSRNOT00000069005 2 1 1 63 5 128398354 128398372 ACTTTGTAGTCCAGGCTGG 59 128398309 128398327 CAGCACTTAGGAGGCAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054615 ENSRNOT00000077466 3 1 1 60 13 5099890 5099908 CCAGTCTTCACTCAAGGGT 59 5099930 5099950 GCTTGTTTGGAGATTCTAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041721 ENSRNOT00000063474 1 1 1 60 15 87221768 87221786 CTCAGAAGCTAAGCAGGGT 59 87221808 87221828 ATATTAAAGGGAGGTCTCCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051987 ENSRNOT00000087696 3 1 1 60 5 58591038 58591056 CCCAGAAGAAAGACAAGGT 57 58590996 58591017 GAACATGAACATAACCTTCTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000056985 ENSRNOT00000091798 2 1 1 73 5 129142755 129142773 AATGAGGTTTATCCGAGGC 57 129142700 129142718 ATTTCAAGTCGTCATGGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Catip ENSRNOG00000037835 ENSRNOT00000077820,ENSRNOT00000080528,ENSRNOT00000071700 2 3 4 134 9 81644546 81644564 CAAAGCCAAGGATCACCAC 59 81644662 81645113 ATATCCTCCAACCGGAAGG 59 Novel Rattus norvegicus 81 U12 ENSRNOG00000054820 ENSRNOT00000085854 2 1 1 60 3 10783695 10783714 AAAGGTTGCTATCTAAGGCG 58 10783736 10783755 GGCAGATCGCATTACTTAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055819 ENSRNOT00000087345 2 1 1 60 6 95402901 95402919 GACCGGTTTCAGTCAAAGG 59 95402943 95402961 CTTGTTCGGAGGTTCTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047576.1 ENSRNOG00000048750 ENSRNOT00000075765 1 1 1 80 5 38019016 38019038 AGATTTCACCTCACATGCG 58 38018954 38018973 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000061076 ENSRNOT00000084975 2 1 1 60 20 19411381 19411399 CAGCTATGACATCTGCCAC 58 19411423 19411441 GCCCTACCTAGATCTGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021022.2 ENSRNOG00000058197 ENSRNOT00000083282 2 1 1 60 13 53782491 53782510 ACTTCATTTGGAAGGGTGTC 58 53782532 53782551 AGCAGAAAGACATGATCCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056688.1 ENSRNOG00000043567 ENSRNOT00000068834 2 1 1 66 7 36917681 36917699 AGGGAAGTATGTCACTGGG 58 36917633 36917651 GAATGACACTAGGCCTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057150.1 ENSRNOG00000058424 ENSRNOT00000090748 1 1 1 80 7 57814160 57816503 GCACCTATTATGGTAACTTGCG 60 57814101 57814122 TACAGGAGATCACAACAGAGAC 59 Novel Rattus norvegicus 81 AABR07004894.1 ENSRNOG00000028974 ENSRNOT00000047494 3 1 1 90 1 166282439 166282458 ACTAAGAGACCACCTGTCCT 60 166282364 166282386 CATCATGGGCAATCACCAG 59 Novel Rattus norvegicus 81 SCARNA16 ENSRNOG00000055493 ENSRNOT00000083232 1 1 1 60 5 148502394 148502418 CTTGACCTAAAGTAAATTCCCAGAG 60 148502358 148502379 CTGTTACTGCAAATTCTAACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031184.1 ENSRNOG00000056808 ENSRNOT00000091534 2 1 1 80 18 3617481 3617500 AGACCCAACAAATGTTCCAC 59 3617416 3617439 CTTACATTGCGTGAGCTCTG 59 Novel Rattus norvegicus 81 AABR07052755.2 ENSRNOG00000032597 ENSRNOT00000043221 3 1 1 61 3 73438769 73438788 TGTAGGACTGACAGATGACC 59 73438725 73438746 AGTAGATGACTAGAAACACAGC 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000059873 ENSRNOT00000084428 2 1 1 60 19 21459617 21459638 GAGCAGTACAGACAAGATTAGC 59 21459578 21459597 ACTTCACAAATGTGCACGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028009.1 ENSRNOG00000061359 ENSRNOT00000089943 3 1 1 60 17 52756000 52756020 AACTCAACCTGGTTACTACCT 59 52756040 52756060 TTATTCCCATCCTCTATCCGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000057970 ENSRNOT00000079471 1 1 1 61 15 41941450 41941468 AAAGAGACCATTGTGGCAG 58 41941407 41941425 TTGCTATAGCACAGGACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD47 ENSRNOG00000057278 ENSRNOT00000078298 1 1 1 60 13 78855391 78855411 CAGTGATGTGATGATTCTGCC 60 78855431 78855451 AATGGAACGGTTGTAAAGGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047036.1 ENSRNOG00000061874 ENSRNOT00000091550 1 1 1 104 5 16464402 16464420 CACACTCAAGCACAAACAC 58 16464488 16464506 ATGTTTGCGTGAGTCTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000056434 ENSRNOT00000088952 1 1 1 60 13 60569737 60569758 TTGCATGTGGAAATACCTTCTC 59 60569776 60569797 AGCATGTTCTGGATACATTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052065 ENSRNOT00000086444 1 1 1 62 13 91465854 91465872 ATTGCTGCTGTGTCATGTG 59 91465810 91465831 AATGAATGAGACATAGCCTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054894 ENSRNOT00000088069 1 1 1 60 19 62201051 62201071 ACGATACAGAGAAGATAGCCT 58 62201092 62201111 AATTTGCGCTATGTCATCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061077 ENSRNOT00000084064 1 1 1 60 15 80581191 80581209 GAGAAGATTAGCATGGCCC 58 80581149 80581167 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056569 ENSRNOT00000090068 3 1 1 60 13 183428 183450 GATACAGAGAAGATTAGCATGGC 59 183469 183488 GAACGCTTCACAAATTTGCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000059077 ENSRNOT00000083530 3 1 1 60 7 137917811 137917830 TATCTTTGGTGTGCAATGGT 58 137917770 137917791 ACAATAGGCTACATACACTACC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055704 ENSRNOT00000085093 1 1 1 60 5 16731971 16731990 CTGCTGTGTCACATATTCCT 58 16731930 16731949 CACAGCATGGACATAGTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA21 ENSRNOG00000059686 ENSRNOT00000086923 2 1 1 74 5 165438645 165438664 TTTGCTAATGACCTGCTGAG 58 165438590 165438608 AACAAGTTGCCACTTCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000055815 ENSRNOT00000085244 1 1 1 60 20 20782653 20782674 AGGTATCTTTGTGACATGTCAG 58 20782614 20782632 GAACATGTTCTTCCGTGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061780 ENSRNOT00000091633 3 1 1 60 18 35102629 35102647 GGATATGAGGACAAGCCAG 57 35102668 35102689 CCAAATCAACTCTGATGATCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058868 ENSRNOT00000085157 1 1 1 60 18 38289411 38289434 GAAGCTGTCTGTTCTACTAAAGAG 59 38289451 38289471 CAACTAAAGTCTGGTCCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000036200 ENSRNOT00000054323 2 1 1 60 13 58460949 58460968 CCGATCTCATCTGATCTCGG 60 58460989 58461009 TCTCCATCCAAGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056999 ENSRNOT00000085163 3 1 1 60 5 145352643 145352661 AAACAGCACAGAGATCAGC 58 145352601 145352619 GAACGCCTCATGATTTGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056039 ENSRNOT00000086198 2 1 1 61 5 63650698 63650716 GTGTCAGTAGGTGGCAGAG 60 63650741 63650759 TGCTCATAGGTCAGGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031738.1 ENSRNOG00000055037 ENSRNOT00000090160 1 1 1 96 18 31114014 31114032 AGAAGGAAGAGGCTGAAGG 59 31113936 31113954 GATAGTGAGCTGTTGGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034730.1 ENSRNOG00000046027 ENSRNOT00000071362 1 1 1 80 11 85475144 85475166 AGATTTCACCTCACATGCG 58 85475209 85475228 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 SNORA65 ENSRNOG00000055379 ENSRNOT00000080333 1 1 1 60 4 34530327 34530347 AATACTGAACTGACAGTGAGC 58 34530287 34530308 CAACATTCATATGTAGGACAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056340 ENSRNOT00000084479 3 1 1 67 7 83264179 83264201 GGTAGGTGTGACTTCTATATCAC 58 83264226 83264246 CACTGGTAGACATAGCCTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051406 ENSRNOT00000089687 1 1 1 60 18 4314563 4314581 CTCCACTTCACATGAGCAC 59 4314603 4314623 CTGAAGAATGTTCCTCCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058914.1 ENSRNOG00000032026 ENSRNOT00000044982 3 1 1 79 7 142695729 142695747 CCACTCTACAACTACCCGG 59 142695666 142695684 AACTTGTCAAAGGGCTCCA 60 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000044937 ENSRNOT00000070204 1 1 1 60 18 27292893 27292911 ACAGATCGCATCCAATCTC 57 27292932 27292953 GCAGTCTCTAAGTACTAACCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000060256 ENSRNOT00000079484 2 1 1 60 1 61398199 61398221 GGAGCATAATAGAATGGACTCCT 60 61398161 61398182 TAGGAAGGGTAGCCATTTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060083 ENSRNOT00000091214 2 1 1 60 18 40063442 40063465 GTTATGTCTACACTCAGTGTTCTG 59 40063482 40063502 ATGTCAGGCTACTACATTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054456 ENSRNOT00000083716 1 1 1 60 15 101142884 101142905 GTCAAGGGTATAGGAGTAGCTG 60 101142923 101142944 TAGTGGATTACCTTGTTTGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063632.1 ENSRNOG00000029825 ENSRNOT00000044583 1 1 1 83 6 38006787 38006805 GAATCCCTCATTGTGAGGG 58 38006635 38006740 GTTCCAGACCAGAACACAG 58 Novel Rattus norvegicus 81 Rn60_X_0752.3 ENSRNOG00000051257 ENSRNOT00000076920,ENSRNOT00000076871 2 2 2 80 X 74334913 74334933 GATTGCCTGGATTTAGAGGAG 58 74334762 74334871 CAGGATTGTTCCCGTAAGG 58 Novel Rattus norvegicus 81 U6 ENSRNOG00000057105 ENSRNOT00000090607 2 1 1 60 3 176928440 176928461 CTAGAGTGCTTAGTTTAGCAGC 59 176928401 176928425 CTAGTACAGAGGCCATACTAATCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000385.1 ENSRNOG00000055421 ENSRNOT00000089608 1 1 1 60 1 11873244 11873265 TGGCATTGCAGTTGATATTCTG 60 11873286 11873304 AAACGAGGACCATGAAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059584 ENSRNOT00000082745 1 1 1 60 18 16136825 16136843 GAGAAGATTAGCATGGCCC 58 16136783 16136801 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA53 ENSRNOG00000056599 ENSRNOT00000080363 3 1 1 60 7 31818082 31818101 TTAGTCCTCAGGTTCTGACG 59 31818041 31818061 GTCCTGACAGTAACACATGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061875 ENSRNOT00000086457 1 1 1 60 5 48749448 48749467 TGCCTGAAGCTAAGTATGTG 58 48749407 48749426 GGTCTAAGAACCGTCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC127640.1 ENSRNOG00000056331 ENSRNOT00000088472 2 1 1 82 1 75461889 75462109 GGGACCACAGAAATAGCAG 58 75461825 75461843 TTTCTGTTGCTTGGGTTCC 59 Novel Rattus norvegicus 81 AC127640.1 ENSRNOG00000056331 ENSRNOT00000088472 3 1 1 83 1 75461891 75462111 TCGGGACCACAGAAATAGC 60 75461826 75461844 TTCTGTTGCTTGGGTTCCT 60 Novel Rattus norvegicus 81 SNORA69 ENSRNOG00000061195 ENSRNOT00000083166 3 1 1 60 X 123705907 123705926 AGCAGGTAGCAATTACAGTG 58 123705866 123705886 TCTTTCAGCAGGATTAATGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060289 ENSRNOT00000090777 2 1 1 60 X 23467627 23467645 AACCTCCAAACAAGCTCTC 58 23467585 23467603 CTTGGAAGCTTGACTACCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054693 ENSRNOT00000081609 1 1 1 60 7 92034040 92034059 TTACATGTGCATCAGTTGGT 58 92034081 92034100 TCAGAACACTGAGCATAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058303 ENSRNOT00000081219 2 1 1 61 7 125509686 125509707 GATACAGAGAAGGTTAGCATGG 59 125509727 125509747 GGAACGCTTCATGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052625 ENSRNOT00000091949 1 1 1 60 18 27553325 27553346 ATACAGAGAAGATTAGCATGGC 58 27553365 27553385 GGAATGCTTCACGAATTTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000052997 ENSRNOT00000081858 2 1 1 61 9 99150843 99150861 AGAGACTTTGACAGCCCAG 59 99150884 99150904 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058297 ENSRNOT00000082526 1 1 1 60 3 7177503 7177524 AATACAGAGGTTAGCATAGCCC 60 7177545 7177563 ATGGAATGCTTCACAGCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 NRON ENSRNOG00000058888 ENSRNOT00000084664 2 1 1 60 3 12870719 12870737 ATTCTTCTCATGCCACCAG 58 12870761 12870779 CACAGTAAAGGAGCAGTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC126148.1 ENSRNOG00000048337 ENSRNOT00000071413 3 1 1 82 1 222483989 222484008 GCAGTAAGAGGAAGAGGAGG 59 222483923 222483941 CTACCTCTTGGAGGTGGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042733.2 ENSRNOG00000060024 ENSRNOT00000092016 2 1 1 82 19 6026880 6028625 TTTAAGAAGGTACTGCCGTG 58 6026817 6026835 ATCTAAGAGGACTGGTGCC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058384 ENSRNOT00000084759 2 1 1 60 18 14119286 14119304 GTGCATTAGAAGGTGGCAG 59 14119326 14119346 ACAGGTCAGAACTCTTAAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC103024.1 ENSRNOG00000031313 ENSRNOT00000042660 3 1 1 60 10 34355980 34356002 GGAATAAGGAATGTTCCGTACTG 59 34356020 34356040 CATTCTCATTACGCTTTCTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053191 ENSRNOT00000080932 2 1 1 61 X 98935881 98935899 CCACATGTGCATCATAGGT 58 98935838 98935859 AGTCAGAACACTGAACTTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060935 ENSRNOT00000086606 2 1 1 60 15 86819399 86819421 GGCTGTTATGTTACCTATGTGTC 59 86819361 86819380 GAGCATAGGCATAGCCTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029111.1 ENSRNOG00000046888 ENSRNOT00000074560 2 1 1 60 10 7696253 7696272 ATGCAGCTCTGACTATCTCG 60 7696295 7696313 CTCTGTGAATTTGAGGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_8_0405.3 ENSRNOG00000051142 ENSRNOT00000076145 2 1 1 60 8 40505527 40505547 TCTTCTTGGGAATCTATGTGG 57 40505568 40505587 GCAATCAGAACAATCAAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054918 ENSRNOT00000080858 1 1 1 60 6 79057972 79057992 CGATACAGAGAAGAAGCATGG 59 79058013 79058032 GGAATGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053666 ENSRNOT00000077120 3 1 1 60 18 16511484 16511506 GATACAGAGAAGATTAGCATGGC 59 16511526 16511544 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054766 ENSRNOT00000088295 1 1 1 60 15 76116726 76116744 AGTATGTGGCTGGGAAGAG 59 76116684 76116704 ATTCAAGTGTCCATAGGTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058134 ENSRNOT00000080412 2 1 1 61 7 15377876 15377895 TTGAAACAATACAGAGGCCC 58 15377919 15377937 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061345.2 ENSRNOG00000057086 ENSRNOT00000087750 1 1 1 60 4 117758009 117758027 CTGACACTGCCTCATTCTC 58 117757967 117757987 ACACTAGGATTATGGTCACGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052447 ENSRNOT00000087273 2 1 1 60 15 32756615 32756634 AAGACAACCTTACCCGAGAG 59 32756657 32756675 AGCAGCTGCTCATATACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063638.1 ENSRNOG00000036511 ENSRNOT00000054618 3 1 1 61 6 38572551 38572569 CATGATCCAGCCATCTCTG 58 38572593 38572612 CCTAGTCATGCTTGAGAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055395 ENSRNOT00000081668 1 1 1 60 7 45856549 45856569 ACAGAGAAGATTAGCATAGCC 57 45856588 45856609 GTGGAACACTTTACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056567 ENSRNOT00000078132 3 1 1 60 1 197930691 197930709 AGGCAGATAGCCTCATCTC 58 197930649 197930667 ACTGAGTGAACAGCTTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562948 ENSRNOG00000013975 ENSRNOT00000018934 1 1 1 80 1 48023258 48024032 CTAATGCAACAGGAATGAACG 58 48024074 48024092 GTTTCAGCATCCGACTCTC 58 Novel Rattus norvegicus 81 Rn60_8_0646.1 ENSRNOG00000053753 ENSRNOT00000085526,ENSRNOT00000081697 1 2 2 80 8 64822305 64825762 CAGAATGGAGCATGTGTTCC 59 64822244 64822262 GGGTCATGTCGTCTGAGAG 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000056912 ENSRNOT00000091181 1 1 1 60 15 35396901 35396919 ACATCAGTAGGTGGCAGAG 59 35396941 35396961 TTCATAGGTCAGAACAGTGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052608 ENSRNOT00000077696 2 1 1 60 20 8024471 8024489 TAAGGGTTGACCTGCTGAG 59 8024511 8024531 GGAACTATGAGGGAAAGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052608 ENSRNOT00000077696 3 1 1 60 20 8024628 8024646 TGCAGATTTGCTTTGCTGG 60 8024670 8024688 CAGCAGGAAACAAATGCGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059196 ENSRNOT00000083107 3 1 1 60 4 174894022 174894040 TTCAGTCAAGGGTACACCA 58 174893980 174893998 TTGAGAGCTTGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052698 ENSRNOT00000091422 3 1 1 61 20 867054 867076 AGAGGGTATGTCTACACTTAGTG 59 867015 867036 TGCAAGGCTACTAATTACTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000053495 ENSRNOT00000089058 2 1 1 60 15 109415263 109415281 CATGGGATCTCCAACTGCA 60 109415305 109415323 TGTGATAACCTGGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060424 ENSRNOT00000091293 3 1 1 61 4 135568296 135568316 GCAACACAGAGAAGATTAGCA 59 135568338 135568357 AGAAGCATGAGTGTTGTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044303 ENSRNOT00000069570 1 1 1 60 20 50281022 50281040 TGAAGCTAAGCAGGGTCAG 59 50280980 50280999 CTGGTCTTGCTTGGTATTCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061239 ENSRNOT00000085239 1 1 1 61 4 115021738 115021756 AGAGATTTAGCTTGGCCCT 58 115021695 115021713 TAAGCTTGGCAGTAGTGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA36 ENSRNOG00000052458 ENSRNOT00000088240 3 1 1 64 11 72756789 72756807 TTGAGTTCAGTTCAGGGCA 59 72756743 72756762 CAGCCAATTTCAATGTCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052642 ENSRNOT00000092229 3 1 1 60 19 12375606 12375626 TTGTTGACTCCTGAGATTTCC 58 12375646 12375666 CTACCACCACAAAGTATGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA13 ENSRNOG00000058981 ENSRNOT00000078524 1 1 1 60 18 26569098 26569119 CATAAATTAATGCTTTGCGGCC 60 26569139 26569158 CTCCTGAAACCCAAGATACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031787.1 ENSRNOG00000048913 ENSRNOT00000073301 3 1 1 65 18 34788165 34788184 TCCTCTTCCTCTTCCTCCTC 60 34788212 34788230 CCAGAAATGGAGCTCTGCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060986 ENSRNOT00000084951 2 1 1 82 11 35841919 35841937 AATGAGGTTTATCCGAGGC 57 35841983 35842001 GGGCTGAGAGGATTTACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Vault ENSRNOG00000052373 ENSRNOT00000090410 1 1 1 60 18 29647887 29647905 GCTATGTAACGTGGTCGGT 60 29647929 29647947 AACCACTCACCAGATAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA8 ENSRNOG00000057112 ENSRNOT00000084213 2 1 1 63 11 68161327 68161347 CCAATTGTCACTAGATCTCCC 58 68161284 68161302 TTTCACTCAATTCGCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051701.1 ENSRNOG00000060562 ENSRNOT00000080646 1 1 1 80 3 19559665 19559686 ATGACTCTGAGACAATTTCACC 59 19557950 19559330 GTTGGAAATGTCATTGCCAG 58 Novel Rattus norvegicus 81 SNORA4 ENSRNOG00000056026 ENSRNOT00000077510 3 1 1 60 11 81375321 81375342 TTAACCAGTTCACGCTATTTGG 59 81375282 81375301 TGGTATAGTCCACTGTGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056622 ENSRNOT00000079147 2 1 1 60 7 15854188 15854208 CTTTGTTCCCTTACAGTTCCA 58 15854227 15854248 TCCTCTTTGACAAAGTACACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055195 ENSRNOT00000089711 3 1 1 60 19 21892775 21892794 GATAGAGGAGAGGCTGTGTC 59 21892734 21892754 TCTACTCATTCAGATGTCCGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000052242 ENSRNOT00000080776 2 1 1 60 18 60869545 60869564 TTTGGATTTATGGCAGGCTC 59 60869587 60869605 GTTTGCTCTAGCATGGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015112.1 ENSRNOG00000058903 ENSRNOT00000084585 1 1 1 86 14 47268304 47268323 ACAATCAAACAGGTGAAGGA 57 47268370 47268391 CCTTTGGTTTATATCCAGGGT 58 Novel Rattus norvegicus 81 AABR07043829.1 ENSRNOG00000049520 ENSRNOT00000070941 2 1 1 60 19 42778069 42778088 TCTGAAGCTAGACATTCCGA 58 42778028 42778047 TTCCTTGGGACTCTAGACCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC102976.1 ENSRNOG00000057798 ENSRNOT00000086690 3 1 1 60 19 24656230 24656248 AACACATGGAAACAACCCT 58 24656270 24656290 GTATCTACAGCTCCTTGTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA79 ENSRNOG00000055168 ENSRNOT00000077371 3 1 1 115 3 23279579 23279598 CTATAGGCATGGCACTAGGA 59 23279483 23279502 TGACCCTGCAAATTTCAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051981 ENSRNOT00000087149 3 1 1 60 5 80234146 80234167 GGAGACGGGTTATGTATATGCT 60 80234186 80234206 GGCTGATAATCATTCAGAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053277 ENSRNOT00000084468 2 1 1 60 3 124796083 124796101 ATGAGCGATTGTACTCGGA 59 124796124 124796143 ATTCCAGTTTCCCACATTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065699.4 ENSRNOG00000058352 ENSRNOT00000077771 3 1 2 73 6 139486817 139486945 AAAGGTGTCCAGTGTGAGG 60 139486982 139487000 AGTTTCAGGGACCTTCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07068360.1 ENSRNOG00000050471 ENSRNOT00000070987 3 1 1 84 9 101251575 101251593 TCTTCACATCATTGTGGCA 57 101251639 101251661 TCTGATCTGTTTGGTCTTTCC 58 Novel Rattus norvegicus 81 AC096370.2 ENSRNOG00000060047 ENSRNOT00000091116 2 1 1 80 1 259649792 259649810 GCATTCTTCACCTCCTGAC 58 259648103 259649749 CTTCTCTGGTGTTTACCAGC 59 Novel Rattus norvegicus 81 Cetn2 ENSRNOG00000059593 ENSRNOT00000078929 1 1 1 80 X 152928837 152928857 CGTTCAAGAATCTTAAGCGTG 58 152928418 152928798 CTTCATCAATCATTTCCTGGAG 57 Novel Rattus norvegicus 81 AABR07030823.1 ENSRNOG00000046001 ENSRNOT00000072687 3 1 1 179 10 105283579 105283598 TACTGCAGGAGTTTGAGGAG 59 105283417 105283437 AGTCAAAGTTACCTTTGAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07033524.1 ENSRNOG00000032213 ENSRNOT00000046693 1 1 1 60 11 25674469 25674488 CAGTGAGTAGATGCACAGAG 58 25674428 25674447 TTGGTCTTGATGGTCTGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC122630.1 ENSRNOG00000060740 ENSRNOT00000090086 2 1 1 60 4 41902709 41902727 GTAGATGCAGACTCAGTGG 57 41902750 41902769 ATAGAGTGACAGAGACCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056611.1 ENSRNOG00000055726 ENSRNOT00000079193 2 1 1 60 7 32193188 32193209 GTTTACGGCAAAGTCAATACCT 59 32193228 32193248 CAGCATACTGTGTCTTCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000053482 ENSRNOT00000078365 1 1 1 60 7 119122782 119122801 GTATCCAGAACATGCAACAC 57 119122823 119122842 CCTCTACTATAAGGCTGGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000053482 ENSRNOT00000078365 3 1 1 60 7 119122780 119122801 ATGTATCCAGAACATGCAACAC 59 119122821 119122840 TCTACTATAAGGCTGGCAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027212.1 ENSRNOG00000057683 ENSRNOT00000081494 3 1 1 80 17 19538237 19538259 CTTCAACTATACCGTACCTATGC 59 19538298 19538319 GGAACACAGAGTTCCATCCT 60 Novel Rattus norvegicus 81 AABR07042859.1 ENSRNOG00000057392 ENSRNOT00000071592 2 1 1 62 19 12402889 12402907 CAAGAAGTTAGACCGCAGG 58 12402843 12402863 TCTTTGTTTAGCTCTGAACCC 58 Novel DesignNoJunction Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000058725 ENSRNOT00000087159 3 1 1 60 5 91133002 91133020 ATGAAGAACGCAGCTAGCT 60 91133043 91133062 TGTCGATGATCAATGTGTCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059423 ENSRNOT00000082214 1 1 1 60 7 110500104 110500125 GTGGCTACTATGTCACTTTCTC 59 110500065 110500083 GCATTCACATTGCCTTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061864 ENSRNOT00000082834 3 1 1 73 4 123261572 123261591 AAAGTTCAAAGTTCGCAGAG 57 123261518 123261539 ATCATTGAGATGTTCCTAAGGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059109 ENSRNOT00000085274 3 1 1 67 6 75606889 75606907 TTATCCATTGCACTCCGGA 59 75606840 75606858 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052621 ENSRNOT00000086674 2 1 1 60 11 23071753 23071774 CCTATAAGTGTTGCAGATGTGG 59 23071714 23071732 TCTTCTCTGCCACCTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054114 ENSRNOT00000082977 1 1 1 60 11 16497657 16497675 GAGAAGATTAGCATGGCCC 58 16497699 16497717 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000052714 ENSRNOT00000077490 2 1 1 60 11 81377001 81377022 GAAGTGTTCTATTGTCGTTCCC 59 81376962 81376986 CTAGGCAGAGATAGTAATGTATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096473.2 ENSRNOG00000053543 ENSRNOT00000084369 1 1 1 60 7 120138213 120138234 GGGAAGATACTCTATCTGTCCC 59 120138172 120138195 CTCTCCTGGAGATACAGAATCC 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000058168 ENSRNOT00000082060 3 1 1 60 9 111065964 111065983 ATAGGAGGAGCAGTCTTTGG 59 111065923 111065943 GAAATTCTAGCAAGGGACCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135901.1 ENSRNOG00000054640 ENSRNOT00000086148 2 1 1 83 5 154103701 154103724 CTCTCCTGTTGGCCTTACC 60 154103771 154103789 CAAAGGCCCTGTGTTTGAG 59 Novel Rattus norvegicus 81 AABR07009377.1 ENSRNOG00000055011 ENSRNOT00000087889 3 1 1 66 2 94960470 94960490 GAAGTGATGGCGTTGATGG 59 94960520 94960538 CACCAACAATCCCAACTGG 59 Novel DesignRelaxed Rattus norvegicus 81 AC131848.1 ENSRNOG00000005898 ENSRNOT00000007732 2 1 1 80 3 76154753 76154775 TCTCCATCTACTCTGTTACTCTG 59 76154813 76154837 ACATGGGAATGTGTAAAGGAC 58 Novel Rattus norvegicus 81 AABR07008805.1 ENSRNOG00000046150 ENSRNOT00000071652 1 1 1 60 2 74714060 74714078 CCGTCCCTCAGTATACCTG 59 74714101 74714120 TTCTGTCATGGTGATCTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056755 ENSRNOT00000078225 3 1 1 60 17 79036238 79036257 TAGAACCTCCAAACAAGCTC 58 79036280 79036298 GCATTATCACCCGTGTACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066826.1 ENSRNOG00000039790 ENSRNOT00000061048 2 1 1 87 9 17946115 17946133 ATTCAAGTCCCAGCCTCAG 59 17944134 17944156 TATACTGCTGGCCCATCTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000058466 ENSRNOT00000090935 3 1 1 62 11 52753791 52753809 CAGAGAAGACTAGCATGGC 58 52753835 52753853 TTAATGGAACGCTTCACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044338 ENSRNOT00000069605 2 1 1 64 7 32471367 32471388 TGCACTGGTTACATCTAATCTC 58 32471324 32471342 TTTCTCCCAGTCAGGTACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054407 ENSRNOT00000085960 1 1 1 61 7 6637741 6637762 GTGTCACATGTAAATGACAGAG 58 6637781 6637802 TTCATAGATCAGACACTGAGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053195 ENSRNOT00000082013 2 1 1 61 7 102032216 102032234 ATGCTTACTTTGGCAGCAC 59 102032173 102032191 GGGCCATGCTAATCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056664.1 ENSRNOG00000041366 ENSRNOT00000063119 2 1 1 60 7 35249845 35249865 CAGAGGCTTATAGATCCAAGC 58 35249887 35249905 CAGCTTCTGAAGCCTTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057412.1 ENSRNOG00000050895 ENSRNOT00000074506 1 1 1 61 7 70020530 70020548 GTATTGGCCTTGGAGTCAG 58 70020487 70020505 CATGCATATTGGACGGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056776 ENSRNOT00000077641 1 1 1 60 7 53840683 53840704 GGAAACAATAGATTAGCTTGGC 58 53840644 53840663 GACATGCTCCTCAGATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000057675 ENSRNOT00000078911 2 1 1 60 9 23374410 23374429 CCTGGATGTAATGACCTCCA 59 23374449 23374470 CCATAAATCATGCAATCCAGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA72 ENSRNOG00000058556 ENSRNOT00000080287 2 1 1 60 10 23480842 23480863 GCTAAACATTCGCTATAGTACG 57 23480803 23480822 ACCCAGGTAAAGAACTAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000059018 ENSRNOT00000087304 3 1 1 60 7 18457 18475 TTAGCGGTGGATCACTTGG 60 18496 18517 ATTAATTCTTGCAGCTAGCTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_1360.1 ENSRNOG00000051226 ENSRNOT00000076150 1 1 1 60 1 134921748 134921768 AGCCATACAGGTAAGATTCAG 57 134921790 134921808 ATAGTCCAGAGCAAAGCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000053959 ENSRNOT00000087145 2 1 1 60 10 74757917 74757940 CGTTACTAGAGAAGTTTCTCTGAC 59 74757959 74757977 CTATGTCTCGTCCTCGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056239 ENSRNOT00000088700 1 1 1 60 4 33537182 33537201 TTGATTCAGACTGTCCACCT 59 33537141 33537161 ATGTATGGGATGTTGAAGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000058553 ENSRNOT00000088067 3 1 1 60 7 48027388 48027406 AGCACAGTGAAGTATGCCT 59 48027346 48027366 TGATTCAATCCCACATGTTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056885 ENSRNOT00000083789 3 1 1 60 7 38987880 38987899 GAGCCTATGTGTATGCTCAG 58 38987839 38987860 TGTTAGGCTACTAATCATCCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC113635.2 ENSRNOG00000056335 ENSRNOT00000081214 1 1 1 60 2 209834771 209834789 GGAAGACAAATTGGGCCAG 59 209834812 209834832 CAACTCTAGCTGCTTCTAAGG 58 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000055444 ENSRNOT00000081230 2 1 1 60 10 34184395 34184416 GAGAAGATTAGCATTGTCCCTG 59 34184356 34184374 AATATGGACCGCTTCACGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052844.1 ENSRNOG00000051607 ENSRNOT00000045225 1 1 1 80 3 78508607 78508628 TCTCTTAAGACTCAAAGTCAGG 57 78508547 78508566 AAAGAGGATGACAACCAGG 57 Novel Rattus norvegicus 81 SNORD86 ENSRNOG00000061010 ENSRNOT00000085750 3 1 1 60 4 10161531 10161552 AGAGCTCCCTAACTTACATAGG 59 10161573 10161591 TCCAGACACCATGACTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA61 ENSRNOG00000055698 ENSRNOT00000088463 2 1 1 60 4 119866366 119866384 GTGGTGCTACAGAAGGGAG 60 119866324 119866345 CAAGTTCTATAGCAGACACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002351.1 ENSRNOG00000060136 ENSRNOT00000091103 1 1 1 80 1 71766445 71766465 CAGTACCCAGACAAGAAACTG 59 71766505 71766961 CTTGAACCAGACCTTGATCTC 59 Novel Rattus norvegicus 81 AABR07012763.1 ENSRNOG00000057707 ENSRNOT00000086252 3 1 1 89 2 206842701 206842719 CTTGTTCCTTATGGCTGCC 59 206828478 206842648 GAACCCTGTAAGCATGGGT 60 Novel Rattus norvegicus 81 AABR07012587.1 ENSRNOG00000002223 ENSRNOT00000003022 3 1 1 61 2 198591468 198591486 CAATGGCTCTGACAGTTGG 59 198591425 198591445 GAATGCAGCCATAGCTAACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Cfb ENSRNOG00000000419 ENSRNOT00000075928,ENSRNOT00000065044 3 2 2 80 20 4540678 4540788 ATGATGGAGCGGGATACTG 59 4540616 4540635 TGTCTTCAAGACGGTACTGG 60 Novel Rattus norvegicus 81 AABR07058406.1 ENSRNOG00000059955 ENSRNOT00000078097 2 1 1 60 7 114690412 114690433 CAAGTTCATCAAGAGGATGGTG 59 114690373 114690391 CAGCTCCTCCCACTTTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0890.5 ENSRNOG00000051024 ENSRNOT00000075953 1 1 1 148 10 89174623 89174641 GAACCTTTCTGCTGTGCTG 60 89174752 89174993 GGCTGTAACGTAAAGAAGGG 59 Novel InUTR Rattus norvegicus 81 AABR07071223.1 ENSRNOG00000037129 ENSRNOT00000056005 2 1 1 60 8 105526689 105526710 TTTGAACTAAGAGATCCACCTG 58 105526731 105526749 TAGTGCACGCCTTTAATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054384 ENSRNOT00000082178 1 1 1 60 8 55307071 55307091 TTCCTAACACTGGAACAACAC 59 55307110 55307131 CTTGCATGGCATAATTATGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067491.1 ENSRNOG00000047654 ENSRNOT00000075738 1 1 1 135 9 49024277 49024295 AATCAACAAACGCTCCCTG 59 49024395 49024413 CATGTTGTGATGGAGGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 5S_rRNA ENSRNOG00000044601 ENSRNOT00000069868 1 1 1 60 8 111941328 111941346 CCTGAATGTGCCTGATCTC 58 111941286 111941304 TCCCATCCAAGTCCTAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07025900.1 ENSRNOG00000049606 ENSRNOT00000074244 3 1 1 80 16 54608583 54608604 CCAAAGCAAACACTGAATATCC 58 54608649 54608667 AGTCTTCCAGCATCATGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052755.1 ENSRNOG00000009648 ENSRNOT00000012787 2 1 1 60 3 73284359 73284379 ATTTCCTACATTGGGTGTCTG 58 73284317 73284337 AATATTCAGTCAAGAGCAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07030630.1 ENSRNOG00000052124 ENSRNOT00000077567 2 1 1 60 10 96661762 96661781 CAACTCAAAGTACCTCCTGC 59 96661803 96661822 TAGCTGTTTCACAGTCCAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA33 ENSRNOG00000054517 ENSRNOT00000084929 3 1 1 61 1 22759974 22759993 CTAGTCTGCTTAGCTCTGTG 58 22760016 22760035 CATGGCGTTACTATTGCCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055174.1 ENSRNOG00000058180 ENSRNOT00000091013 2 1 1 67 7 380960 381671 GTAAGTTCAGCTCCCAGAGG 60 381701 381719 AAGTCTCCCTGGGTAAGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AC113635.3 ENSRNOG00000061289 ENSRNOT00000086836 3 1 1 82 2 209849991 209850011 CAAGGATCAAAGGGAATTGAG 57 209850055 209850089 ATTAGGTTACGGCCAACAG 58 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000035686 ENSRNOT00000053809 3 1 1 60 1 71911859 71911880 AGAATGTGCTTGATCTTGTCTG 59 71911898 71911919 AAGTACTATCTAGCCTTGACCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC114017.2 ENSRNOG00000061210 ENSRNOT00000078747 2 1 1 80 10 38827093 38827113 TTTAGTCAACAAGGCTTGGG 58 38827032 38827052 TTCTGTCGGAAAGAAATTCGG 59 Novel Rattus norvegicus 81 LOC102549726 ENSRNOG00000054031 ENSRNOT00000081704 2 1 3 101 20 4873103 4873333 ACAATGAATGGGCTTTGCC 59 4873020 4873038 AGTAAGGGAGCAGAAACCC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000041053 ENSRNOT00000062806 1 1 1 60 8 39495990 39496011 CATCCTGGATATGTCTGATCTC 58 39496032 39496050 CATCCAAGCACTAACCAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000051651 ENSRNOT00000081581 2 1 1 60 8 109746316 109746337 ATCTCATCTCAGAAGCTAAGCA 59 109746358 109746376 TGTGGTGCTTTCTCCTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071431.1 ENSRNOG00000046630 ENSRNOT00000073748 1 1 1 60 8 114847383 114847401 CCTCACTGTTCTCTATGGC 57 114847425 114847443 ATCCCTATATGAGCGAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000059281 ENSRNOT00000079799 3 1 1 67 8 78579450 78579472 CCATACTACCCTGAACATATCTG 58 78579405 78579425 ATTAAGAAAGCCCAACCTTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07050354.1 ENSRNOG00000050976 ENSRNOT00000075541 1 1 1 88 5 162138730 162138748 CGGTCGAGATCAAGAAAGG 58 162138654 162138676 CTTGTTAAACCGTTCACCG 57 Novel Rattus norvegicus 81 AABR07070810.1 ENSRNOG00000061579 ENSRNOT00000082158 2 1 1 60 8 85489875 85489893 AGATTGTCAACATTGCCCG 59 85489916 85489935 GTTCCAGAAAGTTCTCTGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026300.1 ENSRNOG00000050771 ENSRNOT00000073351 1 1 1 97 16 71075401 71075419 CTTCTTGTCACAACAGGCA 58 71075321 71075341 AATAATTCGGAATGCACGGA 58 Novel Rattus norvegicus 81 AABR07045632.1 ENSRNOG00000031969 ENSRNOT00000041101 1 1 1 99 20 54072039 54072060 TTACCTTCAGAATTACAGGGAG 57 54072120 54072139 GGAACACAGGCTTTGTAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AC128114.1 ENSRNOG00000060230 ENSRNOT00000086101 1 1 1 81 16 61843358 61843376 AGCTTCCTGGAACTCAGTC 59 61843292 61843311 TTGCAGGTATTGTCCCTGG 60 Novel Rattus norvegicus 81 SNORA40 ENSRNOG00000058310 ENSRNOT00000082291 2 1 1 60 3 39210132 39210153 CAACTATCAGACAAAGACATGG 57 39210093 39210112 TTCTAGGTTTCAAGGGAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoU109 ENSRNOG00000051455 ENSRNOT00000084450 3 1 1 60 3 148345001 148345021 ACATGCTACAGTGATGAAGGA 59 148344961 148344983 ACTACTCAACCTCTTCTGTAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC095852.2 ENSRNOG00000051712 ENSRNOT00000087837 3 1 1 60 3 153521752 153521773 AGTACAGTGCAGTACCATACAG 60 153521791 153521812 TGTATTGTACTGCACTGTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031158.2 ENSRNOG00000059717 ENSRNOT00000088723 2 1 1 65 18 2189092 2195793 AGTAGGTGAAGAGGTTGAGTG 59 2195820 2195838 ACTCAGAGCAGTTCTGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07014745.1 ENSRNOG00000060277 ENSRNOT00000089286 3 1 1 82 14 29645518 29650842 CAAGAAACGACAAGGTGGG 59 29645454 29645472 TTGGGAAAGAGGATGTGCA 59 Novel Rattus norvegicus 81 AABR07046713.2 ENSRNOG00000061676 ENSRNOT00000080044 2 1 1 102 5 2739368 2741227 GCTCTTCAGGACGTCTGAG 60 2741293 2741311 CTGGACTATCTCCTTGCCG 60 Novel Rattus norvegicus 81 AABR07031251.1 ENSRNOG00000053296 ENSRNOT00000090524 3 1 1 67 18 5839157 5839175 GTAGAGACACTGTGGCTGG 60 5839003 5839126 GGGTTGTTCTGAAGACTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AC116236.2 ENSRNOG00000059729 ENSRNOT00000089937 2 1 1 84 14 34329142 34329516 GTCTCTGAATGGGTCCAGG 60 34329558 34329582 GTAGGAATTCAACATAGATCCACTG 60 Novel Rattus norvegicus 81 AABR07031278.1 ENSRNOG00000060302 ENSRNOT00000081877 3 1 1 84 18 7118600 7118784 AAGACAACACTGGGTCAGG 60 7118832 7118850 CTATGTTCTCCTGATCGCG 58 Novel DesignNoJunction Rattus norvegicus 81 AC127076.2 ENSRNOG00000059601 ENSRNOT00000077387 1 1 1 81 5 5056098 5056116 ATTCGTGCTGCAGAATCAC 59 5056158 5064254 TGCTGTTATCTCGAACATAAGC 59 Novel Rattus norvegicus 81 AC111831.1 ENSRNOG00000054592 ENSRNOT00000077392 1 1 1 80 6 8176333 8201775 TAGTCGTCAAGTATGTGCTG 58 8176272 8176290 GGAGTCAGGGAAACAAAGG 58 Novel Rattus norvegicus 81 AABR07015358.1 ENSRNOG00000058705 ENSRNOT00000089606 1 1 1 93 14 53046364 53046382 TGCCACGTGTTAATTAGCA 58 53046439 53049437 AAAGTCTCTGCCTTGAGGT 59 Novel Rattus norvegicus 81 AABR07000385.2 ENSRNOG00000058425 ENSRNOT00000082588 2 1 1 181 1 11840126 11840145 AAATACCATCCCAGCTAGCA 59 11837797 11837815 CCTGGACATCAGAGACGTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07029768.1 ENSRNOG00000052088 ENSRNOT00000081115 1 1 1 85 10 49359602 49361410 TCTCATAGTGAGAATGCACCA 59 49359537 49359555 CTTCCATGTCTTTGCTGGC 60 Novel Rattus norvegicus 81 AABR07015517.2 ENSRNOG00000058688 ENSRNOT00000078204 1 1 1 60 14 61116720 61116738 AAGCCTGCCAAATCCTAGG 60 61122446 61122464 ATTAGGCCTTCTCCACGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07015517.1 ENSRNOG00000058054 ENSRNOT00000088045 2 1 1 80 14 61298792 61298811 AAGAAACAGAGTCACTGCAG 58 61298854 61299416 AGAGTACCACCATGATGCA 58 Novel Rattus norvegicus 81 AABR07030034.1 ENSRNOG00000056642 ENSRNOT00000086672 3 1 1 80 10 63551055 63551074 CTATCTCCTGATCACCTGGG 59 63548720 63551015 CTATATGGGTCCTGGAAGTACG 60 Novel Rattus norvegicus 81 AABR07061155.1 ENSRNOG00000058418 ENSRNOT00000083209 1 1 1 80 4 107202352 107209826 GTAGTAGGAAGATCTTCAAAGCC 59 107209862 107209884 GTACCTTCCAAGGAAAGTTACAG 59 Novel Rattus norvegicus 81 AABR07047586.1 ENSRNOG00000060102 ENSRNOT00000082299 1 1 1 60 5 38572347 38572366 CATCAACATTGAAGTGTGCT 57 38567864 38572326 ATGACTTCCAGTAGTTCACTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07000493.1 ENSRNOG00000053291 ENSRNOT00000081876 1 1 2 83 1 14938547 14945677 CGCCCAGAATTCAAGACAC 59 14945724 14945742 CAGTCACAAACCAGCTTCC 59 Novel Rattus norvegicus 81 AC136053.1 ENSRNOG00000057719 ENSRNOT00000081461 3 1 1 90 1 15247453 15247472 CATTCCCAAGGTCTTTGGAC 59 15247525 15255751 CAGCAACAACCTGAAACCA 59 Novel Rattus norvegicus 81 AABR07030259.1 ENSRNOG00000059351 ENSRNOT00000081619 3 1 1 74 10 78339985 78340602 AACCAATAGCCCAATGGTG 58 78339929 78339947 AGAGTAATGCACTGTGGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07048040.1 ENSRNOG00000055171 ENSRNOT00000091069 1 1 1 76 5 58022472 58031710 AACCAGGCTTCTGGAAGTC 60 58022414 58022432 TCAAGTGCTCAAGACTCGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07072414.1 ENSRNOG00000054929 ENSRNOT00000084998 3 1 1 61 14 80905146 80905164 AGATGCTCAGCACTGATCC 60 80910809 80910827 TGCCTAGTCTCTTTCCACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07048321.1 ENSRNOG00000057406 ENSRNOT00000081275 1 1 1 80 5 72892383 72892401 CATTTCAGACTCCTGGGTG 58 72892445 72929271 ATAAGGTCCCAGGACATCG 59 Novel Rattus norvegicus 81 AABR07016056.2 ENSRNOG00000060971 ENSRNOT00000084512 3 1 1 62 14 92960999 92961017 ATGTCGCATGAATCGTCTG 58 92951739 92951758 TGCAGATAGAGCTGTTTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07061455.1 ENSRNOG00000051463 ENSRNOT00000085346 2 1 1 101 4 125646356 125655285 CATCTAGCACAAGCGATGG 59 125655350 125655368 AGTGACAGTGGTGAGTGTG 60 Novel Rattus norvegicus 81 AABR07061455.1 ENSRNOG00000051463 ENSRNOT00000085346 3 1 1 103 4 125646356 125655285 CATCTAGCACAAGCGATGG 59 125655352 125655370 ACAGTGACAGTGGTGAGTG 60 Novel Rattus norvegicus 81 AABR07016578.1 ENSRNOG00000054531 ENSRNOT00000089463 3 1 1 110 14 105141425 105141443 CCAGGAAGACACTAGGTGG 59 105138323 105138341 GCACAGAGCTTAAGAAGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07000725.1 ENSRNOG00000055637 ENSRNOT00000090824 2 1 1 82 1 24826734 24828001 GAACAAGAGCTCCTACTTCAG 58 24828042 24828063 TGTGCAGTAATGACATTACCTC 59 Novel Rattus norvegicus 81 AABR07030568.4 ENSRNOG00000055804 ENSRNOT00000085485 2 1 1 65 10 93238170 93238191 TGTCTTTGCAGATGAAATGGTC 60 93238217 93239917 TTTCCTGTGAGCAACTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07016621.1 ENSRNOG00000056139 ENSRNOT00000077722 3 1 1 82 14 107263332 107264530 GGATGCCTACTCAAGATCCC 60 107264574 107264593 CCATAGCTGGGTAGAGATGG 59 Novel Rattus norvegicus 81 AABR07061807.3 ENSRNOG00000054089 ENSRNOT00000080989 2 1 1 81 4 146300475 146306403 AACAAAGACAGTGCAGATTCG 60 146306446 146306464 GAGGGAGTATCCCAAGCAG 59 Novel Rattus norvegicus 81 AC142421.2 ENSRNOG00000061518 ENSRNOT00000081097 2 1 1 80 1 32240545 32240563 GAGATAAGATGCTGGCACC 58 32240607 32244063 GTTCCAGAGAAACCTAGGC 58 Novel Rattus norvegicus 81 AABR07001018.1 ENSRNOG00000053323 ENSRNOT00000089213 3 1 1 80 1 33794838 33794856 GTCAGGCATTGACTAAGCC 59 33794895 33796997 GTAGGCAATTCTTAGATTCGAGAC 60 Novel Rattus norvegicus 81 AABR07049292.1 ENSRNOG00000058472 ENSRNOT00000088984 2 1 1 80 5 114338446 114338465 CCTGTTAGAGAATGAGCCCA 59 114205283 114338406 GTAGATTTCCTTCTATCTGCGC 59 Novel Rattus norvegicus 81 AABR07001018.2 ENSRNOG00000054020 ENSRNOT00000088968 3 1 1 98 1 33967028 33979875 CCTCCAAGAAGTTGAAGGTC 58 33966949 33966970 GGATAGCTTTGAACTCATTCAG 57 Novel Rattus norvegicus 81 AABR07001025.1 ENSRNOG00000057928 ENSRNOT00000091983 1 1 1 80 1 34269672 34271213 CAGCCTACAATTGGTTCTCAC 59 34269612 34269630 GCAGACTCGGACATAACCT 59 Novel Rattus norvegicus 81 AABR07049389.1 ENSRNOG00000054826 ENSRNOT00000091586 2 1 1 61 5 120330034 120330052 TTAGATCGAAGCTCCCAGG 59 120325122 120325140 GGTGTTCTTCCTCTGTCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07017176.1 ENSRNOG00000057844 ENSRNOT00000084363 1 1 1 80 15 15159557 15185083 CGATGAAAGGAACCCAACTC 59 15159496 15159515 CCATTGTATGTCACAGGTGG 59 Novel Rattus norvegicus 81 AABR07030834.1 ENSRNOG00000052569 ENSRNOT00000080833 2 1 1 85 10 105452801 105456186 CTAATTACCGACATACACTCCTG 59 105452738 105452756 TCAGTTCTCCATCAGAGCG 59 Novel Rattus norvegicus 81 AABR07030854.2 ENSRNOG00000051943 ENSRNOT00000082347 2 1 1 85 10 106573962 106573981 TAAAGATGGGAGGTAGGGTC 58 106570847 106573914 AAGATCATGCCATTCCTGG 58 Novel Rattus norvegicus 81 AABR07049508.1 ENSRNOG00000058843 ENSRNOT00000087485 3 1 1 88 5 124924697 124928628 CAGAAACCCAAGTTTGATCCT 59 124924629 124924647 GAGCACAAGTCAGCAAAGG 60 Novel Rattus norvegicus 81 AABR07001068.1 ENSRNOG00000058077 ENSRNOT00000081636 1 1 1 80 1 37059741 37059759 TATGTCTGGTTGCCATGGG 60 37059802 37162360 AGAGGAAGAATGACACCTGG 59 Novel Rattus norvegicus 81 AABR07049520.1 ENSRNOG00000058765 ENSRNOT00000088258 1 1 1 89 5 125571208 125571226 GAAGTGAAGGGTCAGACTG 58 125567384 125571155 ATCTCATGTTCAGGGAGCT 58 Novel Rattus norvegicus 81 AABR07001210.1 ENSRNOG00000057057 ENSRNOT00000086932 3 1 3 84 1 38882295 38882314 ATTCAGGTCTGACAACACTG 58 38864918 38882248 TTCCATGGAACGAAAGGTG 58 Novel Rattus norvegicus 81 AABR07017268.1 ENSRNOG00000055328 ENSRNOT00000082259 2 1 2 72 15 20340997 20341997 AAATGTGGGTTTGGTGTGC 60 20342033 20342051 ATGGTAGGTCTGAGCAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07017270.1 ENSRNOG00000057155 ENSRNOT00000084051 2 1 1 80 15 20609661 20609681 GAATACCAAGACAATGGCTGG 59 20609722 20611503 GCGGACATCTTGAAGATTGG 59 Novel Rattus norvegicus 81 AABR07062430.1 ENSRNOG00000058544 ENSRNOT00000081729 3 1 1 60 4 176075843 176076536 AGCCAGAACCTCTACATCC 59 176076560 176076578 CACAGTTCTTGTAGTGCCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07017626.1 ENSRNOG00000058996 ENSRNOT00000084265 1 1 1 84 15 29388010 29388251 TTTGTCTGGATGTATTGTGGC 59 29387946 29387964 GTCCAGGGTGACTTCTTCC 60 Novel Rattus norvegicus 81 AABR07001464.1 ENSRNOG00000053052 ENSRNOT00000089275 2 1 1 80 1 45823385 45826148 TCCAGCATAAACAAGGCCT 59 45823323 45823342 GAGTCACTGCGTAATCAGGA 60 Novel Rattus norvegicus 81 AABR07001477.1 ENSRNOG00000058103 ENSRNOT00000086348 2 1 1 95 1 46741848 46744048 ATACAAAGGGTTAAAGGAAGGG 58 46741774 46741792 GACATTGTTGCATGCTAGC 58 Novel Rattus norvegicus 81 AABR07049799.1 ENSRNOG00000054301 ENSRNOT00000083974 2 1 1 83 5 138678470 138678488 GAGTGCAGTCCCATTTCAG 59 138678535 138684797 TGTGATCTGACACCAGGTG 59 Novel Rattus norvegicus 81 AABR07062823.1 ENSRNOG00000056860 ENSRNOT00000081006 1 1 1 101 6 10767023 10767041 CTTCTTCCTCATCAGGGCC 60 10765966 10766960 GAATACAGGAATTGCAAACCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07062823.1 ENSRNOG00000056860 ENSRNOT00000081006 3 1 1 102 6 10767023 10767041 CTTCTTCCTCATCAGGGCC 60 10765965 10766960 TGAATACAGGAATTGCAAACCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07001591.1 ENSRNOG00000051938 ENSRNOT00000082276 3 1 1 86 1 53842124 53842310 CTGTTCATCCAGGAAAGAAGAG 59 53842357 53842375 TAGCCTTGCTGTGCTAGTG 60 Novel Rattus norvegicus 81 AC097037.4 ENSRNOG00000059192 ENSRNOT00000090409 1 1 1 80 15 32963080 32963098 GGCTGTCAACAGTTGATGG 59 32963142 32966056 TTTCAAATCGCTGGACACC 59 Novel Rattus norvegicus 81 AABR07049892.1 ENSRNOG00000061538 ENSRNOT00000087580 1 1 2 60 5 143194237 143194257 GAAGCTAGTTGCTAGGAAGTC 58 143194662 143194681 CAAAGTGTTCTTCAGCAACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07001640.1 ENSRNOG00000055577 ENSRNOT00000082407 2 1 1 107 1 54500880 54500899 CAACATCTGCCCAAATTGGA 59 54499817 54499835 CTGATGGAGACTGTGAGCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07001640.1 ENSRNOG00000055577 ENSRNOT00000082407 3 1 1 108 1 54500880 54500899 CAACATCTGCCCAAATTGGA 59 54499816 54499834 TCTGATGGAGACTGTGAGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032123.2 ENSRNOG00000058146 ENSRNOT00000078631 1 1 1 105 18 47959241 47959259 AAAGTGTCTCAGGGAAGGA 58 47953514 47953534 CTTTCTTCCATTCTTGCTGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032123.2 ENSRNOG00000058146 ENSRNOT00000078631 2 1 1 106 18 47959242 47959260 CAAAGTGTCTCAGGGAAGG 58 47953514 47953534 CTTTCTTCCATTCTTGCTGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07050061.1 ENSRNOG00000058693 ENSRNOT00000077103 3 1 1 83 5 149666787 149707857 CCTGTAGAGGTGGAGAAAGG 59 149666723 149666741 CTGGTGTCAGTCTTCCCTG 60 Novel Rattus norvegicus 81 AABR07001700.2 ENSRNOG00000059261 ENSRNOT00000082731 1 1 1 82 1 55376026 55377018 TGGCTAAGGAATGGCTCTG 60 55375962 55375981 TTAAGTGAAAGTTGGCCGTC 59 Novel Rattus norvegicus 81 AC111687.1 ENSRNOG00000052926 ENSRNOT00000090395 2 1 1 80 15 41619170 41619189 CATGTTGTAAAGTGGGAGGT 58 41617403 41619128 TGTATTGTTCCTTCTGGGAG 57 Novel Rattus norvegicus 81 AABR07063581.1 ENSRNOG00000058114 ENSRNOT00000084534 1 1 1 80 6 36081901 36081919 GAGAAGCCTCTCATGTGGT 59 36079035 36081861 GGAGGCTCTATCCTCTAAATCAG 60 Novel Rattus norvegicus 81 AC118858.2 ENSRNOG00000060555 ENSRNOT00000088774 2 1 1 81 18 51713466 51716659 CCATGACAGAGAAGTCTTAAAGAG 59 51716697 51716717 GTACCTTGGTTGACTTTGGTG 60 Novel Rattus norvegicus 81 AABR07050283.1 ENSRNOG00000054390 ENSRNOT00000082800 2 1 1 80 5 159210093 159213915 TACATAAAGGGAGCAGCCA 58 159210031 159210054 TCTCCTGGGTATTATTTAGGTCAG 59 Novel Rattus norvegicus 81 AABR07063636.1 ENSRNOG00000052000 ENSRNOT00000078407 3 1 1 86 6 38339525 38339982 TTATCAGGTAGCCACAAGAGG 59 38339459 38339477 CAGACTGAGTTGGCTAGGA 58 Novel Rattus norvegicus 81 AABR07050484.1 ENSRNOG00000061404 ENSRNOT00000092120 3 1 1 100 5 166894647 166894667 TAACTCCTAGTCTGTGCTGTG 59 166894729 166896783 GGTAATGCCAAACCGTCTC 59 Novel Rattus norvegicus 81 AABR07063741.1 ENSRNOG00000053810 ENSRNOT00000089052 3 1 1 60 6 45023557 45024524 GGATTTGTGAGTCACTATCCA 58 45024544 45024564 GAGTAACTGCTCTCAATTGGT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07051218.1 ENSRNOG00000059773 ENSRNOT00000079427 1 1 1 80 3 1644002 1645308 GAGACCTCTAGTAAGGTTTCCA 59 1645346 1645367 ACTTACAGACTTGATTCCAGAC 58 Novel Rattus norvegicus 81 AABR07002848.2 ENSRNOG00000055681 ENSRNOT00000087482 2 1 1 64 1 86857682 86857700 AAGCTGCCATACTCCTTGG 60 86858398 86858416 TCTCAGGCATCTGTCTGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07002868.2 ENSRNOG00000057222 ENSRNOT00000080831 3 1 1 82 1 87560525 87562808 GAATCATGGCTCATAGTATGGTG 59 87562850 87562868 GTAGGAACTCAGGCACTCC 60 Novel Rattus norvegicus 81 AABR07051308.1 ENSRNOG00000058862 ENSRNOT00000079208,ENSRNOT00000083718 2 2 2 80 3 4734835 4735903 ATCATGAGGAAGGTGACCAC 60 4735946 4735964 GGTCCTCTTCCTTACTCGC 60 Novel Rattus norvegicus 81 AC114093.2 ENSRNOG00000054926 ENSRNOT00000079653 2 1 1 128 18 74862367 74862385 GTTTCACCGTCATTGTTGC 58 74862477 74863541 TCTCCTAACTTGCTGGTCG 59 Novel Rattus norvegicus 81 AABR07002902.1 ENSRNOG00000056429 ENSRNOT00000081905 2 1 1 86 1 88632221 88634886 CTACAGAGACCGAAGGACTC 59 88634935 88634953 CTACCTGAAGGACCATGGC 60 Novel Rattus norvegicus 81 AABR07032688.1 ENSRNOG00000061015 ENSRNOT00000081164 1 1 1 103 18 77177483 77177501 AAAGTACCAAGAGCGATCC 57 77174829 77177416 TTTCAGTTCCCTTCTGCAG 58 Novel Rattus norvegicus 81 AABR07002910.1 ENSRNOG00000061774 ENSRNOT00000079616 3 1 1 81 1 88974811 88974927 ATACCATCATGACCAACCTCC 60 88974970 88974988 ACATCAGGGCTGGATTCAG 60 Novel Rattus norvegicus 81 AABR07051370.1 ENSRNOG00000052882 ENSRNOT00000080029 3 1 1 61 3 6809815 6809836 GCTCTGATTTATAAAGTCAGCG 58 6809143 6809161 ACATGCCCTAGGTACATGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032724.1 ENSRNOG00000053886 ENSRNOT00000077887 3 1 1 103 18 78289059 78289078 AGAGATAGGAAGCAGTGGTG 59 78288535 78288553 TCCAAGGCCTGTGTTACAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07064584.1 ENSRNOG00000056792 ENSRNOT00000085837 2 1 1 63 6 86022848 86022866 CTGAGAGTAGACTGCCTGC 60 86020057 86020078 ATCAATATTCTCATCTCCGGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07064631.1 ENSRNOG00000052186 ENSRNOT00000083522 1 1 1 60 6 87874933 87874953 AGAAATGGCAACTTCATCTCC 59 87871434 87871453 AGAAGCTTGAGATCACAGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07064681.1 ENSRNOG00000056704 ENSRNOT00000079944 1 1 1 94 6 90259917 90259935 CTCCACTGTCAGTCAAGCA 60 90255951 90259861 AGGAGTTCTGCTTAGTACCAC 59 Novel Rattus norvegicus 81 AABR07064681.1 ENSRNOG00000056704 ENSRNOT00000079944 3 1 1 95 6 90259917 90259935 CTCCACTGTCAGTCAAGCA 60 90255950 90259860 CAGGAGTTCTGCTTAGTACCA 59 Novel Rattus norvegicus 81 AABR07051567.1 ENSRNOG00000054810 ENSRNOT00000082446 3 1 1 60 3 17198621 17198641 TCATCAGCTTGTGATTTCCTG 59 17198663 17208064 ACTTGTTGTGGATGCAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07051787.1 ENSRNOG00000059243 ENSRNOT00000084727 3 1 1 80 3 21379338 21379357 TCCCATCTGGATGAAGAGGA 60 21375980 21379297 CTCCTTCAGAGTCATCTTCCC 60 Novel Rattus norvegicus 81 AABR07003167.3 ENSRNOG00000060881 ENSRNOT00000079135 1 1 1 61 1 97131262 97133592 ACAGTGTTGAAACGAGCTG 59 97133617 97133635 TTCTGGAATCCACCAGCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AC120732.1 ENSRNOG00000056508 ENSRNOT00000087222 2 1 1 65 11 31269699 31269717 CATACTCAAAGGCCTGCCT 60 31270277 31270295 CAGTGCTTAACAGCAAGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07051957.1 ENSRNOG00000053695 ENSRNOT00000078384 2 1 1 80 3 30280791 30283066 GGAAAGAAGCCAGGTTTGG 59 30280729 30280748 CAGTTTGGTTGACAGTGAGC 60 Novel Rattus norvegicus 81 AABR07003310.3 ENSRNOG00000056597 ENSRNOT00000091414 1 1 1 80 1 105045464 105046162 GGAGTCAGGAATGAAGGCT 59 105046206 105046224 GGAGAGGACGATGACTCTG 59 Novel Rattus norvegicus 81 AABR07066020.1 ENSRNOG00000060878 ENSRNOT00000085492,ENSRNOT00000086332 1 2 2 85 9 604680 605041 TACTTGCTCTCCTGGACCT 60 604613 604631 CTTGCCATAGATGCGATGC 60 Novel Rattus norvegicus 81 AABR07003449.1 ENSRNOG00000051655 ENSRNOT00000089769 3 1 1 60 1 110026784 110028035 TCTCCATCAGTTGGAATGTCC 60 110028056 110028075 AAATCTGATTGGCAAGAGCT 58 Novel DesignRelaxed Rattus norvegicus 81 AC108574.2 ENSRNOG00000057903 ENSRNOT00000086178 3 1 1 80 11 60048985 60049501 CCTCAAGAATGCCAATAAGAGTC 60 60049537 60049559 GCCACCATGTAATAGATTCTGTC 59 Novel Rattus norvegicus 81 AABR07034310.1 ENSRNOG00000058720 ENSRNOT00000084711 1 1 1 60 11 64195356 64195377 TCTGTAAACTACTACCGAAGGA 58 64195397 64225617 CCTTTGGGTAGGAGAGTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065387.1 ENSRNOG00000061041 ENSRNOT00000088112,ENSRNOT00000078853,ENSRNOT00000083554 1 3 3 80 6 125287242 125287260 TGGATTGATGACAGCCCAG 60 125279171 125287201 TGAGTTGTATGAGCTGATACCC 60 Novel Rattus norvegicus 81 AABR07003841.1 ENSRNOG00000057034 ENSRNOT00000087187 3 1 1 94 1 118977813 118977831 CATGAAGACAAGCCCATCC 59 118976539 118976559 CCTCCGTATTGTCTAGAAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065406.2 ENSRNOG00000060830 ENSRNOT00000082112 3 1 1 99 6 125904609 125910924 AATCTACTTCAGGCAAAGTGG 58 125904530 125904548 AAAGAACTTGCTCTGAGGG 57 Novel Rattus norvegicus 81 AABR07004033.1 ENSRNOG00000058845 ENSRNOT00000077426 1 1 1 82 1 122881550 122889159 AGAACCCAGGAACCAAGAC 59 122889204 122889223 TGGACACAGATGAATGTGCT 60 Novel Rattus norvegicus 81 AABR07072876.1 ENSRNOG00000052074 ENSRNOT00000082826 2 1 1 82 3 62290081 62292723 AAGAAAGGACACCAGAGCT 59 62290017 62290037 TCTCTTCTGATAACTAGGCCC 59 Novel Rattus norvegicus 81 AABR07052573.1 ENSRNOG00000057884 ENSRNOT00000092210 3 1 1 180 3 62621911 62622707 TTCTTCATGAGACGGCTGG 60 62621749 62621768 CCATAAAGTGTTGGGTACGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021760.1 ENSRNOG00000059079 ENSRNOT00000079623 3 1 1 64 13 90160403 90160421 TACAGGATCTCTGCTCCTC 58 90167168 90167190 GATCAGATCACTAGTCGAATCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052643.1 ENSRNOG00000056573 ENSRNOT00000089225 2 1 1 99 3 67676391 67676411 AGAACCGATTTCCAGACAGAG 60 67676472 67683433 GTCCATGAAACCAAAGCCG 60 Novel Rattus norvegicus 81 AABR07034679.1 ENSRNOG00000052500 ENSRNOT00000090340 2 1 1 93 11 83801330 83814221 AAATCATGGCCTGAAGCTG 59 83814277 83814296 TATTATTGCCCTGCCATAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052686.1 ENSRNOG00000060480 ENSRNOT00000086000 1 1 1 104 3 69246656 69267730 GAGACTCCTGAGAGGTGGA 60 69246570 69246589 CCATAATCCATTTGTGGCCC 59 Novel Rattus norvegicus 81 AABR07034718.1 ENSRNOG00000057994 ENSRNOT00000087203 2 1 1 60 11 85053719 85053739 TTTATTGGGTTCTTGTGGCTC 59 85053872 85053890 ACTGGGTCATCTGGATGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021853.1 ENSRNOG00000053610 ENSRNOT00000079971 2 1 1 63 13 95698469 95702830 TAAAGGTCTCCGTTCACAGG 60 95698425 95698443 TTACTTCTTGAGACCGCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07034795.1 ENSRNOG00000052746 ENSRNOT00000091222 2 1 1 81 11 89832358 89834257 GGTAATAAAGCTGAAACACGG 58 89834297 89834318 TGATCATTGAGGTCTTCTACTC 57 Novel Rattus norvegicus 81 AABR07004228.1 ENSRNOG00000059662 ENSRNOT00000092225,ENSRNOT00000077086 3 2 2 70 1 131386721 131431805 GGTGATACTACAACCACTGAC 58 131386671 131386689 GAATCTCCCAGACCTTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021998.1 ENSRNOG00000059555 ENSRNOT00000089751 1 1 2 80 13 101998640 101999232 CCCTTCAGTGAGGTGTCAG 60 101999275 101999294 AGGAGTAGACAAGAAGCCAC 59 Novel Rattus norvegicus 81 AABR07052788.1 ENSRNOG00000058334 ENSRNOT00000078139 1 1 1 80 3 75235996 75239116 TGATTAAGACCCTTTATAGGTCCTG 60 75235940 75235959 TATTCTCACCCTTTGCCTGG 60 Novel Rattus norvegicus 81 AABR07022037.1 ENSRNOG00000056464 ENSRNOT00000079252 2 1 1 80 13 103719028 103719049 TTAGATGTTCCTTTGGGAAGTG 58 103716429 103718989 CTGTATTCTGGGATAACCTGG 58 Novel Rattus norvegicus 81 AABR07022039.1 ENSRNOG00000054076 ENSRNOT00000091867 3 1 1 73 13 103758525 103758543 CACTTGGCATTTGTTGCAC 59 103758578 103770787 GACTCCACATCAAACAAAGTC 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07004241.2 ENSRNOG00000055864 ENSRNOT00000077906 1 1 1 80 1 132497866 132503422 CCATGATTCTCTTAGACTCCAC 58 132503462 132503481 GCAGGGAAAGATAGTCACAG 58 Novel Rattus norvegicus 81 AABR07004241.2 ENSRNOG00000055864 ENSRNOT00000077906 3 1 1 80 1 132497868 132503424 ATGATTCTCTTAGACTCCACGA 59 132503464 132503483 TTGCAGGGAAAGATAGTCAC 58 Novel Rattus norvegicus 81 AABR07035008.2 ENSRNOG00000054841 ENSRNOT00000087032 3 1 1 80 12 3250086 3251119 GAAGAGGAGGACTTCCTCC 59 3251163 3251181 TTCGGATACAGCAATCCAC 58 Novel Rattus norvegicus 81 AABR07035065.1 ENSRNOG00000061479 ENSRNOT00000080405 3 1 2 106 12 3807801 3807928 GTCATGAAGGCATACTCCCT 59 3808637 3808655 CAGAAGGCCTCTTCCTCAG 60 Novel Rattus norvegicus 81 AABR07035193.1 ENSRNOG00000051857 ENSRNOT00000089628 2 1 1 61 12 6592747 6602710 CTCTATGGCGATGACCAGG 60 6592704 6592726 AGTAGTTCACCTACAGATGTCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053118.1 ENSRNOG00000058450 ENSRNOT00000084353 1 1 1 98 3 92139499 92139812 CATAATTGGCATCAAGCAACAG 59 92139871 92139889 AGTGATGGAAGGACTGTCG 59 Novel Rattus norvegicus 81 AABR07024444.1 ENSRNOG00000051437 ENSRNOT00000091395 2 1 1 82 16 328512 332793 CCTGGCCAGATTCAAAGGA 60 332838 332857 GACAAATGTAACCATGGCCC 60 Novel Rattus norvegicus 81 AABR07024457.1 ENSRNOG00000059374 ENSRNOT00000087456 3 1 2 82 16 450871 460659 TCCTACAGAGAAACAGAAAGG 57 450809 450828 ATTTCTTTCTTGGTGGTGCT 58 Novel Rattus norvegicus 81 AABR07024468.1 ENSRNOG00000060607 ENSRNOT00000089982 1 1 1 121 16 535766 569367 CCTATGAAGGCCTTATAGATTCAC 59 535668 535686 ACCCGAAAGAGATTTCCCA 59 Novel Rattus norvegicus 81 AABR07065933.1 ENSRNOG00000057960 ENSRNOT00000091437 1 1 1 80 6 146979395 146979413 AGAAACAATCAGCCAGACC 58 146978117 146979351 CTGATGAAATCACCTGCCT 58 Novel Rattus norvegicus 81 AABR07053437.1 ENSRNOG00000059542 ENSRNOT00000091667 2 1 1 88 3 107017235 107017254 AGAAACAAGAGCAAGCTGAG 59 107015467 107017186 TTCCTGTAACAAATGGAAGCC 59 Novel Rattus norvegicus 81 AC117065.1 ENSRNOG00000052121 ENSRNOT00000077316 2 1 1 86 12 16240738 16240756 GGCTTGGAAAGCAAGACTC 59 16240556 16240688 CTAGAGCACTCGGCTTCTC 60 Novel Rattus norvegicus 81 AABR07024669.1 ENSRNOG00000051588 ENSRNOT00000090991 3 1 1 84 16 11402198 11404155 AGATAAACAGGAAGGCAGTC 57 11404202 11404220 GTAACTCCTTCCTTCAGGC 58 Novel Rattus norvegicus 81 AABR07066735.1 ENSRNOG00000051921 ENSRNOT00000080300 3 1 1 82 9 13523099 13533210 AGGAGCAGTTATCTTTAGGGT 58 13533254 13533272 ACTGGACTGTCCTACAAGC 59 Novel Rattus norvegicus 81 AABR07024734.1 ENSRNOG00000055616 ENSRNOT00000085284 1 1 1 83 16 13013411 13014954 GCTGTTTGTGAGGTATGCA 59 13015000 13015019 GTTTCCAGGAAGCTACAGAG 58 Novel Rattus norvegicus 81 AABR07053577.1 ENSRNOG00000052651 ENSRNOT00000083380 2 1 1 60 3 114650700 114650719 CATCCTCATCCTCTTTGCCT 60 114651756 114651774 AAACACTGTCCTCCAGCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07004761.1 ENSRNOG00000054312 ENSRNOT00000088739 3 1 1 133 1 154822725 154829901 AACGAGTTTGCAGCTTACG 59 154829997 154830016 CGTATGTGCAAAGTACAGCA 59 Novel Rattus norvegicus 81 AABR07066829.1 ENSRNOG00000054111 ENSRNOT00000080385 1 1 1 90 9 18206901 18206920 CTGCATTGTATTAGGGTCGG 59 18206973 18209219 TTCTTCGGCATCTCCTGAC 60 Novel Rattus norvegicus 81 AABR07035778.2 ENSRNOG00000055080 ENSRNOT00000085667 2 1 1 81 12 22297384 22298017 GACCATGTCGGGTATTGCT 60 22298061 22298080 GGGACAGTAAGTACAGCAGG 60 Novel Rattus norvegicus 81 AABR07066832.1 ENSRNOG00000053221 ENSRNOT00000086049 3 1 1 81 9 18443302 18443323 AGACCATGAGACTAAATTCCCA 59 18443363 18445114 TGCTGAGTCTCCTTACATGAC 60 Novel Rattus norvegicus 81 AABR07024856.1 ENSRNOG00000054993 ENSRNOT00000089499 3 1 1 80 16 19400296 19409328 GCAAACAAGACCTCAAACTC 58 19400235 19400253 GAACGAGTCAGCCTAATGG 58 Novel Rattus norvegicus 81 AC109886.1 ENSRNOG00000055574 ENSRNOT00000077128 2 1 1 123 3 124615589 124615607 AAGGTGGACTGTTCAGTGG 60 124615694 124616584 ACCTGTCACCAGTGAAAGG 60 Novel Rattus norvegicus 81 AABR07024955.2 ENSRNOG00000061399 ENSRNOT00000083625 1 1 1 101 16 22562843 22562861 TCTTGCCAGCTTTCAAGGT 60 22562017 22562781 GATCTCCTTCTTCTCAACTTGC 59 Novel Rattus norvegicus 81 AABR07005031.2 ENSRNOG00000060840 ENSRNOT00000078119 2 1 1 100 1 176050352 176050370 GAACATGAACACAGGAGCA 58 176050434 176052780 AGTCTTCGATTCCTCTGGA 57 Novel Rattus norvegicus 81 AABR07053847.1 ENSRNOG00000055284 ENSRNOT00000086551 3 1 1 83 3 130435150 130455273 CATGGACAACAGATGGTGC 59 130455319 130455338 ACTGTCCTTGTAAGCGTCTC 60 Novel Rattus norvegicus 81 AABR07053849.3 ENSRNOG00000061932 ENSRNOT00000085102 1 1 1 74 3 130601387 130601408 CTAGGAATGTTTATCCATGGGA 58 130594905 130601352 TATTCTTTGACAACGGCCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07035802.1 ENSRNOG00000052918 ENSRNOT00000078493 3 1 1 98 12 22796247 22796265 TTGAGGAAGCTTCTGGGAC 59 22792788 22796186 ATTCAAATGTGGTCCAGGGT 60 Novel Rattus norvegicus 81 AABR07053849.2 ENSRNOG00000057184 ENSRNOT00000084508 2 1 1 70 3 130642116 130642134 CCATATTCCAGTGGTCAGC 58 130640521 130642082 TCATGAGGTTTGTTGTCGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035888.1 ENSRNOG00000059259 ENSRNOT00000088837 1 1 1 81 12 26703990 26704010 TCTGGACCTGAATGATACCTG 59 26704052 26709574 GGGAAGGACCTCAAGATCTG 60 Novel Rattus norvegicus 81 AABR07036024.2 ENSRNOG00000060352 ENSRNOT00000091954 3 1 1 69 12 30948086 30948105 TCCATGTCAAGGACATTCTC 57 30947665 30947684 GAAGAGAAGCTTTGCTGTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07036084.1 ENSRNOG00000060336 ENSRNOT00000081257 2 1 1 80 12 33922518 33924875 TGGTGAATGTCGAGGATGG 60 33922456 33922474 CAATCTGCAGGCAATCAGG 59 Novel Rattus norvegicus 81 AABR07036089.1 ENSRNOG00000055993 ENSRNOT00000086585 1 1 1 80 12 34225975 34231597 ATACCCAAGCTGTCTCCAG 59 34231638 34231659 TCCACTCAAACTGAAGTTTCTC 59 Novel Rattus norvegicus 81 AABR07026032.3 ENSRNOG00000059081 ENSRNOT00000081777 2 1 2 80 16 60002272 60004352 TGATGATGCTCAGATCACC 57 60002210 60002228 ATCTTCTGGTCCACTTGGA 58 Novel Rattus norvegicus 81 AC123083.1 ENSRNOG00000060182 ENSRNOT00000078386 1 1 1 80 1 201857593 201857617 CATTTCCTCTTCTCTGTTCATAGAC 59 201857654 201858886 GTCGAAGATGCATCACTTGG 59 Novel Rattus norvegicus 81 AABR07054482.1 ENSRNOG00000061183 ENSRNOT00000091823 3 1 1 114 3 155857430 155858957 CTTACCTGCTCAGATCAAGAG 58 155857336 155857356 TGGATATCTTCCCAGTGAGTC 59 Novel Rattus norvegicus 81 AABR07005955.1 ENSRNOG00000053950 ENSRNOT00000081722 3 1 1 81 1 208694325 208694343 TTGCAACTGTGAAGACCCA 60 208684240 208694281 TATGATGAGGCCTAAGCCAG 59 Novel Rattus norvegicus 81 AABR07036435.1 ENSRNOG00000057583 ENSRNOT00000083739 3 1 1 81 12 43221991 43222009 GGCTCTTCACAGAGGATGG 60 43219162 43221947 CTTTCGGAGACACTCTTCCT 59 Novel Rattus norvegicus 81 AABR07005977.1 ENSRNOG00000052216 ENSRNOT00000084257 3 1 1 97 1 210517470 210517488 CAGCAAAGCCATGGAAAGG 60 210516044 210517411 ACTTGATTTCAGGCAACTTCC 59 Novel Rattus norvegicus 81 AABR07026241.1 ENSRNOG00000059687 ENSRNOT00000083516 2 1 1 65 16 69319835 69319853 CTGTCCCTACCTGGAACAG 59 69320833 69320851 GATGAAGAGCTGTGTCGGT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07054609.1 ENSRNOG00000056512 ENSRNOT00000090601 2 1 1 81 3 163243216 163243236 AAGAAATGGGTCAGCATTCTG 59 163241706 163243173 TGCCATGAATGAGCATCCT 60 Novel Rattus norvegicus 81 AABR07006038.2 ENSRNOG00000061253 ENSRNOT00000088263 1 1 1 88 1 214974848 215004921 CTATCAAAGGAAACGCAAGGA 59 214974780 214974798 ACATGCTCTGGAGACAGTG 59 Novel Rattus norvegicus 81 AABR07036679.1 ENSRNOG00000054596 ENSRNOT00000081300 1 1 1 87 X 259516 259534 ATGCTTGGATCCCTGACAG 60 259585 260122 TCTTGTCCACTTGAGCAGG 60 Novel Rattus norvegicus 81 AABR07054801.1 ENSRNOG00000061502 ENSRNOT00000085438 2 1 1 80 3 169641760 169641779 TGAAGATGACAGGTCTCCAG 59 169641822 169657002 TGTTCCAACACCTTGACGT 60 Novel Rattus norvegicus 81 AABR07006197.1 ENSRNOG00000053356 ENSRNOT00000077519 3 1 1 80 1 224139612 224160928 AGCAAATGGGAACAATGGTG 60 224139551 224139574 GTATCTCCTCTGAACTAAGATGCA 60 Novel Rattus norvegicus 81 AABR07037477.1 ENSRNOG00000058312 ENSRNOT00000086941 1 1 1 60 X 21946881 21946899 GTCATCTGCCAAATGGGTC 59 21946380 21946860 CTGAGAAATCCTGATGAAACCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07037528.1 ENSRNOG00000061366 ENSRNOT00000082703 3 1 1 87 X 23218329 23218348 TGTGATCTGATCATGACAGC 58 23218398 23218989 CTTCCCAAACCTGGTTGAC 59 Novel Rattus norvegicus 81 AABR07054855.1 ENSRNOG00000058795 ENSRNOT00000086974 1 1 1 81 3 172371196 172373907 GGACTCAGACACTGTTCCT 59 172371133 172371151 GATTCGTGTTGCTCGATGG 59 Novel Rattus norvegicus 81 AABR07006311.1 ENSRNOG00000060420 ENSRNOT00000079478 3 1 1 80 1 228815493 228815513 GATCTTGTAGAAGAGCTGACC 58 228793686 228815451 ACAGTCTTCCTTACCTGCT 58 Novel Rattus norvegicus 81 AABR07026499.2 ENSRNOG00000060624 ENSRNOT00000086410 1 1 1 86 16 79207069 79207330 CTGAACACTAATGAAAGATGGG 57 79207004 79207023 AAAGACTATCCTGAAGGCAG 57 Novel Rattus norvegicus 81 AABR07037896.1 ENSRNOG00000058952 ENSRNOT00000081910 1 1 1 80 X 35154471 35154489 ATGGCAATATGCAGTGTGG 59 35151738 35154432 GGTAGTTGTCCTGAAGAAATTCTC 60 Novel Rattus norvegicus 81 AABR07054991.1 ENSRNOG00000060218 ENSRNOT00000086637 2 1 1 92 3 177457797 177457910 GGGATGTGAAGTTTATCTTTCTCC 60 177457728 177457746 TCCTGTGTAAGGAGCACTG 59 Novel Rattus norvegicus 81 AC111257.3 ENSRNOG00000056910 ENSRNOT00000092115 1 1 1 86 16 81082293 81087862 AAGAATAGGGAGTGTTCGC 57 81082225 81082243 CTTGTCCATAAGAACGGCT 58 Novel Rattus norvegicus 81 AABR07068203.2 ENSRNOG00000059293 ENSRNOT00000080391 3 1 1 102 9 90712091 90725540 AACAAACAGATTCTGAGGCA 58 90725605 90725623 AAAGCATTTCGGAACTGCA 59 Novel Rattus norvegicus 81 AABR07055333.1 ENSRNOG00000060440 ENSRNOT00000077500 2 1 1 97 7 1587158 1587176 AAGAATCCCGATTCTACGC 57 1587236 1591324 GTTCATTAATGGACCTGCCT 58 Novel Rattus norvegicus 81 AABR07068222.1 ENSRNOG00000055585 ENSRNOT00000080946 2 1 1 81 9 91414737 91414857 CTAAGATTACAGAAAGAAGAGGGC 59 91414679 91414698 AAACAAGAGCTTCACAACCA 58 Novel Rattus norvegicus 81 AABR07072528.2 ENSRNOG00000057520 ENSRNOT00000090119 2 1 1 70 16 82332004 82332023 CTTCATTGTGGACATGGCTG 60 82331610 82331971 GAAGACAAGCCTTGAGCAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006542.2 ENSRNOG00000058035 ENSRNOT00000086926 2 1 1 99 1 239313386 239318843 CTGAAATGTGAGGGCTGTC 59 239313305 239313324 GCTCTGATGACTCTTTGTCC 58 Novel Rattus norvegicus 81 AABR07038971.1 ENSRNOG00000053156 ENSRNOT00000080597 3 1 1 85 X 65111797 65111816 TTTAACTTTCTGCTGCCCTG 59 65111594 65111612 GTTCAGGTGCCAATTGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07026544.1 ENSRNOG00000053489 ENSRNOT00000078356 2 1 1 80 16 82576268 82576287 TCCTAGGTGACTCGAAATCC 59 82573103 82576226 TTCGACCCTTAGAAGGTGTC 59 Novel Rattus norvegicus 81 AABR07026544.1 ENSRNOG00000053489 ENSRNOT00000078356 3 1 1 80 16 82576273 82576291 AGTCTCCTAGGTGACTCGA 59 82573107 82576229 ACCCTTAGAAGGTGTCCAG 58 Novel Rattus norvegicus 81 AABR07039233.1 ENSRNOG00000060509 ENSRNOT00000079320 1 1 1 80 X 72707111 72707222 CCACAGCAGAACATGTCTC 59 72707261 72707284 CTGTTGCTTGGGATAGTAATACTC 59 Novel Rattus norvegicus 81 AABR07026612.1 ENSRNOG00000056384 ENSRNOT00000084414 3 1 1 82 16 86465679 86465697 TCGTGGTCACAGTATCACC 59 86470323 86470341 CCTCTCAGTGACAGGTTCG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07006656.1 ENSRNOG00000053506 ENSRNOT00000084842 2 1 1 80 1 244977994 244980809 TGGACCTCCTAGATAAGAGC 58 244980851 244980870 AGAACTATCGAGAGCTTCCT 58 Novel Rattus norvegicus 81 AABR07039483.2 ENSRNOG00000059959 ENSRNOT00000090812 3 1 1 73 X 77956553 77957195 GCCCTTCATCTCTGAATGTG 59 77956499 77956518 ATTACCAAGAGGTCACTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056183.1 ENSRNOG00000060952 ENSRNOT00000082368 1 1 2 80 7 20856799 20867869 GAATGTGAGCCAATGTGGA 58 20856737 20856755 TCTCAGCGTACTCCTTGTC 59 Novel Rattus norvegicus 81 AABR07056183.1 ENSRNOG00000060952 ENSRNOT00000083393 2 1 2 80 7 20856780 20856798 TGCTTCAGTCATGTTCAGG 58 20849920 20856740 GAGACCTGTTTCCTAATGATCTC 59 Novel Rattus norvegicus 81 AABR07056374.1 ENSRNOG00000061837 ENSRNOT00000083690 3 1 1 82 7 22986346 22986369 CAGAGATTCCTGTTAAATGTCCAC 60 22982413 22986308 ATCTCTAACTTCATCCAGCCTG 60 Novel Rattus norvegicus 81 AABR07068555.1 ENSRNOG00000055702 ENSRNOT00000091381 2 1 1 80 9 108353762 108405706 ACTATCAGCTCAATGTCTGTG 58 108353702 108353721 TCTGGATCCTTCTCTTGGTG 59 Novel Rattus norvegicus 81 AABR07026936.2 ENSRNOG00000053660 ENSRNOT00000084425 3 1 1 82 17 5811320 5812460 TCTTAGCAAGACCTATTGAAGC 58 5811259 5811279 TCCTCATAAGAGTTTCAGGGA 58 Novel Rattus norvegicus 81 AABR07068590.1 ENSRNOG00000057630 ENSRNOT00000077292 2 1 1 85 9 110399611 110401434 TGACATTGGAGTATTTCTAGGG 57 110399547 110399566 GAATTGAACTCTGGACCTCC 58 Novel Rattus norvegicus 81 AABR07026986.1 ENSRNOG00000057787 ENSRNOT00000085522 3 1 1 91 17 8524001 8524019 TGATTCTCCATCGCCTCAC 60 8523036 8523949 CCGCATATCTTCAGCTTTATGG 60 Novel Rattus norvegicus 81 AABR07042652.1 ENSRNOG00000061211 ENSRNOT00000081065 1 1 1 87 19 1445503 1445521 CCTCCTTCTTCACAAGGGA 59 1436615 1445458 CTTGGATCTCTTCTAGAAATGTTCC 59 Novel Rattus norvegicus 81 AABR07042654.3 ENSRNOG00000060758 ENSRNOT00000079060 1 1 1 80 19 1572649 1572668 CTGGGACAACTTAGCAAAGC 60 1572495 1572609 TTCAACAGCGTGATAACTTTGG 60 Novel Rattus norvegicus 81 AABR07042654.1 ENSRNOG00000057797 ENSRNOT00000085554 2 1 1 96 19 1714572 1714590 GGCTGGTATTCATCCAACC 58 1714647 1715265 CAATTCTGCTTATGGAAGTTGG 58 Novel Rattus norvegicus 81 AABR07027080.1 ENSRNOG00000060331 ENSRNOT00000081655 1 1 1 80 17 13413617 13413637 TTCCTTCATTGTGACCTTCCT 59 13413677 13426351 AGAGGCAGCCTATATTCATGG 60 Novel Rattus norvegicus 81 AABR07072058.1 ENSRNOG00000051500 ENSRNOT00000089252 1 1 1 87 1 262458904 262458922 TCCGGATTTACTCCAGAGC 59 262432275 262458854 TTCAGGAATCCATCCAGGAG 59 Novel Rattus norvegicus 81 AABR07042781.1 ENSRNOG00000055209 ENSRNOT00000079514 1 1 1 80 19 8354969 8354988 CAAGGGAAACTCCATGTGAG 59 8355031 8356715 AGTGTTTGCACCTTCTCTG 58 Novel Rattus norvegicus 81 AABR07027243.1 ENSRNOG00000061345 ENSRNOT00000089968 1 1 3 80 17 21002721 21005681 ATTGCAGTTTAGAGGACAGC 58 21005722 21005742 TGTGATGATCAAGAGATGGTG 58 Novel Rattus norvegicus 81 AABR07069205.1 ENSRNOG00000054346 ENSRNOT00000091933 3 1 1 82 8 11831661 11837943 TTGATCTCACCAGGGAAGG 59 11831597 11831615 CTCACGTGACTCAGTTCCA 59 Novel Rattus norvegicus 81 AABR07042989.1 ENSRNOG00000054003 ENSRNOT00000088811 3 1 1 109 19 15609288 15609306 GAGCTACAGAACAAAGGCA 58 15608590 15609215 GCTGACTTTCTATCCCTGC 58 Novel Rattus norvegicus 81 AABR07056802.1 ENSRNOG00000060920 ENSRNOT00000080263 1 1 1 81 7 41798840 41798858 GGTCGAAGCGTCATATCAG 58 41764201 41798796 GAGAAGTTACCTCCACAGAC 57 Novel Rattus norvegicus 81 AABR07069218.2 ENSRNOG00000053722 ENSRNOT00000085478 3 1 1 80 8 12818421 12821369 AGGTGATATGGTTAGAGGAATCTG 60 12818364 12818386 AGATAGCAGGAATCTAACAGCTC 60 Novel Rattus norvegicus 81 AABR07056858.1 ENSRNOG00000054216 ENSRNOT00000085795 3 1 1 91 7 44144931 44144950 TCAGACACCAAGACACAGAC 60 44142165 44144877 CTTGCCTTCCAATGTCCTG 59 Novel Rattus norvegicus 81 AABR07056984.1 ENSRNOG00000055599 ENSRNOT00000086764 2 1 1 85 7 50073543 50073562 CTTGGAAATGCCAGACTGTG 60 50072598 50073495 GACAGGGACATTCCCACTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07057079.1 ENSRNOG00000053059 ENSRNOT00000085889 2 1 1 132 7 53759563 53759941 TTTCGATCTTGGGCTTTGC 59 53760036 53760055 TTAACAAGGGTTCCACAGCA 60 Novel Rattus norvegicus 81 AABR07069454.1 ENSRNOG00000059163 ENSRNOT00000079540 2 1 1 81 8 23178282 23179276 GGGCAGAATCTTAAGCAACC 59 23179319 23179338 GTCGTGGTCAAGAATTTGGT 59 Novel Rattus norvegicus 81 AABR07043098.1 ENSRNOG00000054562 ENSRNOT00000087496 3 1 1 104 19 20567813 20567831 TGCTGTATCTCCTTTGGTG 57 20559740 20559758 GAATGTGGAGATTCCAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07057176.1 ENSRNOG00000061637 ENSRNOT00000083123 1 1 1 108 7 58882488 58882506 GAGGATTCTGGGACAGGTG 60 58873760 58882417 ATAATGTCCCTTCGGGTCAG 59 Novel Rattus norvegicus 81 AABR07069528.1 ENSRNOG00000057789 ENSRNOT00000084237 3 1 1 86 8 27376957 27408628 ACCACGTTCTTTCTTTGCAG 59 27376890 27376908 TCTCAAGCACTGACCTCTC 59 Novel Rattus norvegicus 81 AABR07057233.2 ENSRNOG00000057241 ENSRNOT00000089812 2 1 1 80 7 62202028 62202961 TAGATGAAGTCTCAACTTGTCC 58 62203002 62203020 GTGGATACTTCCTCAAGGC 58 Novel Rattus norvegicus 81 AABR07027407.1 ENSRNOG00000057161 ENSRNOT00000090633 1 1 1 80 17 28825191 28825211 TTTGACTAAACGTAGGATGGG 58 28825252 28829265 ACCAGGTAAGCTATTTGCAC 58 Novel Rattus norvegicus 81 AABR07043190.1 ENSRNOG00000055271 ENSRNOT00000084676 3 1 1 82 19 26352705 26353789 ACGAAACCTAAAGAGGCCT 59 26352641 26352659 CTCTCCTCTTCCTCGTTGG 59 Novel Rattus norvegicus 81 AC111781.1 ENSRNOG00000053126 ENSRNOT00000090710 1 1 1 60 8 36397064 36397085 CAACAGAAGTTACAGGAGTCAC 59 36397025 36397043 TGAGGACATGGAACAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC133739.1 ENSRNOG00000056082 ENSRNOT00000089585 1 1 1 80 8 39289069 39289089 TCGATTTCCTGGGATTAAAGG 58 39289129 39298572 GTTGAGAGGATCTGTAATCCG 58 Novel Rattus norvegicus 81 AABR07043510.1 ENSRNOG00000057214 ENSRNOT00000088827 3 1 1 69 19 28990489 28990507 TCCCTGATGACAAACATCC 57 28990315 28990333 CATAATGAAAGGCGGTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07027569.2 ENSRNOG00000059845 ENSRNOT00000087970 2 1 1 60 17 37332686 37337128 GCAGAAGTTGGACTCAGAG 58 37337152 37337170 CCTCAGTGGAAGACTTGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07057421.2 ENSRNOG00000054306 ENSRNOT00000085702 1 1 1 60 7 70271942 70271960 AGAAGCCAAATTGGGTTCG 59 70270166 70270186 CAGTTCATCTCTGGCTATGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07069791.3 ENSRNOG00000056347 ENSRNOT00000080549 2 1 1 60 8 40037648 40037667 TCTTCAGTCCTCAAGTTGTC 57 40037363 40037381 CAAGACAGGGTTGGAAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027581.1 ENSRNOG00000057433 ENSRNOT00000088664 2 1 2 91 17 37911576 37911597 CTTAATTACAAGCAGAAACGCC 59 37911643 37912744 CTTGATATTTCTAACCTCTCAGCAG 60 Novel Rattus norvegicus 81 AABR07007078.1 ENSRNOG00000056390 ENSRNOT00000085111 1 1 1 89 1 279688281 279688299 GCATCAAAGCAGTAGAGCA 58 279694933 279694951 TATCACACTGGTCACTGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069821.1 ENSRNOG00000061154 ENSRNOT00000081200 2 1 1 80 8 40902669 40903647 CAAGCAACATCTGGATAACAC 58 40902609 40902627 TTGCTGTTTCTCCTCTAGC 57 Novel Rattus norvegicus 81 AC098190.1 ENSRNOG00000057169 ENSRNOT00000087051 3 1 1 77 2 5881487 5881506 GGTTGAGCCAATGAGATCTG 59 5879348 5879366 ATTAGATGGCTGCTCTGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07043684.1 ENSRNOG00000054327 ENSRNOT00000079272 3 1 1 70 19 35909902 35909921 AGAAGAATGGATGGACAGGA 58 35904401 35904420 TAATCCTTGCCAGTCTTCTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07028908.2 ENSRNOG00000055317 ENSRNOT00000078959,ENSRNOT00000081689 3 2 2 82 10 109508 110531 GGTCAGAATTCAGGTTGGC 59 110577 110595 TCTGGGACACGGTAAACTC 59 Novel Rattus norvegicus 81 AC103227.1 ENSRNOG00000056707 ENSRNOT00000085541 3 1 1 85 2 11195419 11195438 ATAACCAAGCCAGAAGACTG 58 11194531 11195374 GTAAATAACCTCTGAAAGCAGC 58 Novel Rattus norvegicus 81 AABR07043748.2 ENSRNOG00000055745 ENSRNOT00000092177,ENSRNOT00000085034 3 2 2 80 19 38366013 38366032 AGTGAGACCAAGAAGACTGG 59 38365658 38365971 GGCTGTAACATTCAGAACGA 58 Novel Rattus norvegicus 81 AABR07029111.2 ENSRNOG00000056145 ENSRNOT00000077595 1 1 1 83 10 7871857 7871875 TGACATCGTGAAGGTTGTC 58 7871920 7880165 GAAGTCAAGAGTGTCTTCTCC 58 Novel Rattus norvegicus 81 AABR07057798.1 ENSRNOG00000056050 ENSRNOT00000087238 3 1 1 83 7 88071300 88071320 GCACTAGAAGAGGAATACGAC 58 88033197 88071257 GAATCCTGTTAACCTTGTCCT 58 Novel Rattus norvegicus 81 AC130139.2 ENSRNOG00000058236 ENSRNOT00000083807 1 1 1 69 10 13356860 13356878 CTACACAAACATCCTGGCC 59 13358060 13358078 GACCAGAGTTAGATCCCGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029217.3 ENSRNOG00000054877 ENSRNOT00000086196 1 1 1 60 10 15170444 15175418 GGGACTCACATCATTCCCA 59 15175440 15175460 GTCTTCAGATGAGACCAACTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029218.1 ENSRNOG00000054167 ENSRNOT00000082397 2 1 1 86 10 15837097 15837115 TTCCAGGAGCAGTTCAAGG 60 15837162 15838246 GTGAAAGAATCCTTCCAAAGCA 60 Novel Rattus norvegicus 81 AABR07041096.1 ENSRNOG00000054795 ENSRNOT00000082683 2 1 1 83 X 119200636 119200654 GTTATGGCTGCTTTGAGCT 59 119198968 119200592 GGAAATTTCTTTGTCCTTCTCC 58 Novel Rattus norvegicus 81 AABR07041096.1 ENSRNOG00000054795 ENSRNOT00000082683 3 1 1 84 X 119198968 119200592 GGAGAAGGACAAAGAAATTTCC 58 119198905 119198923 TTTGGTTAGCAGCTCTCCT 59 Novel Rattus norvegicus 81 AC111369.1 ENSRNOG00000053789 ENSRNOT00000086750 3 1 1 80 10 16948884 16949128 CTTCTCGAGAATCACCATCC 58 16948823 16948841 ATTCGGTGACACAGATGTC 58 Novel Rattus norvegicus 81 AABR07029452.1 ENSRNOG00000058208 ENSRNOT00000088987 2 1 1 80 10 29189640 29189658 TGGACAGACTCAGTTTCCC 59 29190399 29190417 ATTTCAGCTTGTCTGTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058240.1 ENSRNOG00000053987 ENSRNOT00000087433 1 1 1 60 7 106055589 106055608 CTCCAAACAGATGTTGACCC 59 106054607 106054626 GGATCTCTTCCAAGTCTCAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07070173.1 ENSRNOG00000053983 ENSRNOT00000079409 2 1 1 76 8 56024615 56024634 GGCTCTCCATATTTGGAAGC 59 56024043 56024576 TTTGTCCTTCGGAGTGACC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07007789.1 ENSRNOG00000053598 ENSRNOT00000083326 1 1 1 68 2 28264026 28264044 TTTCTGCAGGAGTGAGGAG 59 28282275 28282293 TTCCGGTCAAGTCTCACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07007799.1 ENSRNOG00000061406 ENSRNOT00000086415 3 1 2 82 2 28841478 28841499 GAGGAATGACAGTGAACAACTC 59 28836930 28841438 TTGCAATGAAGTCCTTCAAGAC 60 Novel Rattus norvegicus 81 AABR07072559.2 ENSRNOG00000056375 ENSRNOT00000087248 2 1 1 80 17 44800477 44801446 CCAATGACTCAATCCCAGG 58 44801487 44801508 GAGTTCCAACTACTTGTCTGTC 59 Novel Rattus norvegicus 81 AABR07058656.1 ENSRNOG00000053803 ENSRNOT00000080276 3 1 1 91 7 129842308 129842326 CTTCTTGTTCTGCAGCTCC 59 129855856 129855875 TCACTGATACTAGCCCTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07070505.3 ENSRNOG00000058432 ENSRNOT00000090432 2 1 1 80 8 72734663 72734682 ATCACAAACCAGACAGACCT 59 72734722 72736386 AGTTAATTCACTTCTGTGCTGG 59 Novel Rattus norvegicus 81 AABR07070518.1 ENSRNOG00000054131 ENSRNOT00000079964 1 1 1 86 8 73534038 73534056 GAGTTCTGTTGAGCCACAC 59 73533175 73533991 GACAATTCGGATCAGAGATCTC 59 Novel Rattus norvegicus 81 AABR07059009.2 ENSRNOG00000058122 ENSRNOT00000082708 2 1 1 80 4 1093179 1093198 CAGAGCTTTGAAAGTGAGCA 59 1093241 1109977 ACTAGAGGGAAGACCTGGG 60 Novel Rattus norvegicus 81 AC132760.1 ENSRNOG00000059372 ENSRNOT00000090074 2 1 1 90 20 7655028 7655047 TATAAGACCCACCACGAACC 59 7655096 7655789 TTCCGATGACTAGAATCAGTAGG 59 Novel Rattus norvegicus 81 AABR07044562.1 ENSRNOG00000052789 ENSRNOT00000082975 2 1 1 81 20 10613772 10613795 GGTTTGTAGAAAGAGAAGAACTCG 60 10613833 10614491 TCGTTGATCTTAAACGCTCTG 59 Novel Rattus norvegicus 81 AABR07028465.1 ENSRNOG00000055963 ENSRNOT00000087930 2 1 1 80 17 71158642 71158661 AATTGCAAGCGATTCAAAGC 59 71152107 71158602 CTTCTCTGCATATTTCCCAAGG 59 Novel Rattus norvegicus 81 AABR07044717.1 ENSRNOG00000055750 ENSRNOT00000082808 1 1 1 60 20 18248202 18258575 GGAGATTTCTCAACCGGGT 59 18248160 18248181 GCTTCGTTTACGAACTAAATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AC125620.1 ENSRNOG00000054749 ENSRNOT00000077893 3 1 1 81 4 28615215 28615234 CCTCAATCTGGTTGCTTCTC 59 28603280 28615174 TATGACGAAACTCAGTAACCCT 59 Novel Rattus norvegicus 81 AABR07028469.1 ENSRNOG00000051695 ENSRNOT00000090314 1 1 1 82 17 71459699 71459717 GGACCGGATGATACTTGGG 60 71457048 71459653 GATGTTTCACCTTGCAGGC 60 Novel Rattus norvegicus 81 AABR07044754.1 ENSRNOG00000052144 ENSRNOT00000077693 2 1 1 81 20 19605285 19605303 CTCAGCTTTCACAAGAGGG 58 19605345 19610260 TATTCTGACCTAAAGTTGTCCG 58 Novel Rattus norvegicus 81 AABR07028534.1 ENSRNOG00000059907 ENSRNOT00000081693 1 1 1 80 17 74003716 74004574 TTCAAGTTAGTAACCTCGGGA 59 74004614 74004634 CCGTATACTCACCTCATAGGA 58 Novel Rattus norvegicus 81 AABR07044804.1 ENSRNOG00000054048 ENSRNOT00000087778 2 1 1 82 20 21190409 21191022 AAGTGTGCAATTCAGGCTC 59 21190345 21190363 TTGGACAACCGGTGTATCC 60 Novel Rattus norvegicus 81 AABR07044837.2 ENSRNOG00000060235 ENSRNOT00000088740 2 1 1 85 20 23073705 23073723 TGAACAAGAGTGGGACCAG 59 23083563 23083585 TGTTATAGACAGATGAGACTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07071199.1 ENSRNOG00000056201 ENSRNOT00000082349 2 1 1 81 8 104376260 104377774 CAGTGCCATTTGTGAGCTG 60 104376197 104376217 TTCTGCTATTGGTCTGAGGAG 59 Novel Rattus norvegicus 81 AABR07028797.1 ENSRNOG00000061071 ENSRNOT00000080704 3 1 1 80 17 86744823 86744842 AGTTGCAAAGAATGCATCTG 57 86741673 86744780 TCCCAGGAGATAGCTTCTC 58 Novel Rattus norvegicus 81 AABR07044962.1 ENSRNOG00000056428 ENSRNOT00000089619 2 1 1 80 20 28371435 28372191 GGTTCAGAAATTGCCTGTCC 60 28372231 28372252 TCACTGTAGTCTTCAAGTTCCT 59 Novel Rattus norvegicus 81 AABR07071294.1 ENSRNOG00000057020 ENSRNOT00000080250 3 1 1 80 8 108080876 108084663 CAAAGCATGCACAGAAATGC 59 108080815 108080835 TCAGTAGCTACTTCCTTCCCT 60 Novel Rattus norvegicus 81 AABR07044980.1 ENSRNOG00000061835 ENSRNOT00000091080 1 1 1 81 20 30108187 30111690 CAATGCCACGGATCAAGAC 59 30108124 30108142 CATGTCTTGTACGTCCGTG 59 Novel Rattus norvegicus 81 AABR07045262.1 ENSRNOG00000059536 ENSRNOT00000086768 2 1 1 80 20 39771901 39778792 TCTACATTCTCTGAGAATGACTGG 60 39771844 39771865 GTATGTTCAAGGAAGGACTGTG 59 Novel Rattus norvegicus 81 AABR07060261.1 ENSRNOG00000059379 ENSRNOT00000086493 2 1 1 87 4 65074129 65074147 GGAGGAAATGCTGCAACAG 60 65073057 65074081 GTGTTGTGAGACCTTTATCTGG 59 Novel Rattus norvegicus 81 AABR07071512.1 ENSRNOG00000055306 ENSRNOT00000080248 2 1 1 80 8 119317432 119319362 TTCTTGACAAAGTTCACAGAGC 60 119319401 119319421 AAAGTCTGGTTCACAACAGAG 59 Novel Rattus norvegicus 81 AABR07060519.1 ENSRNOG00000059013 ENSRNOT00000086066 1 1 1 113 4 77415653 77446385 TGAGAAGGCAGACAATGAGG 60 77415559 77415577 TTCTTCCTCCATCCACAGC 59 Novel Rattus norvegicus 81 AABR07008655.1 ENSRNOG00000061232 ENSRNOT00000090414 2 1 1 60 2 68819536 68819556 GACTCGAATTTGGAACCTACC 59 68819578 68820154 TCTTCTCCCTGGTGAAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071589.1 ENSRNOG00000057234 ENSRNOT00000084169 2 1 1 95 8 123391448 123393398 CACGGATACATAAGATCATGCA 59 123393454 123393472 CATGTCACCAGTCCTTGTC 58 Novel Rattus norvegicus 81 AABR07043877.2 ENSRNOG00000054148 ENSRNOT00000083375 1 1 1 84 19 45537565 45537584 AAGTCTTTCCAGTTCTGGCT 59 45537631 45563406 TTCCCATTTGATTTGCCGC 60 Novel Rattus norvegicus 81 AABR07071619.1 ENSRNOG00000058565 ENSRNOT00000081690 2 1 1 81 8 124414751 124414769 CTTCCTGCAGCTAAGTTCC 58 124414814 124415729 CGAAGAGATGCAAACTGCT 59 Novel Rattus norvegicus 81 AABR07043940.1 ENSRNOG00000052678 ENSRNOT00000085197 3 1 1 80 19 48958329 48958350 GGGAGAAATTCCTAAGAAGAGG 58 48958390 48960136 CTAACATCCCAGTCAGTGTC 58 Novel Rattus norvegicus 81 AABR07071662.1 ENSRNOG00000059072 ENSRNOT00000081801 3 1 1 154 8 126542738 126567989 TTTGTTCGCCTAGAACACC 58 126568107 126568125 AAGCAAGAACTGGATGGAG 57 Novel Rattus norvegicus 81 AABR07044036.1 ENSRNOG00000059054 ENSRNOT00000080991 2 1 1 61 19 53395381 53396305 CCATCATTTGAAGAAGATCTGC 58 53395341 53395362 TAGGTGATTACTCTTCCTCACG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07008970.1 ENSRNOG00000058721 ENSRNOT00000077499 1 1 1 117 2 81722588 81722608 TGTCCTCATTTGTTCTTCCTG 58 81729495 81729513 AAGGGTCCACGTAAGATGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07058773.1 ENSRNOG00000055355 ENSRNOT00000082261 3 1 1 93 7 136953005 136953024 TTCTCAGACAGGAAGCAGTG 60 136953076 136955293 CTGAAATTACCAGTGTTCTGACC 60 Novel Rattus norvegicus 81 AABR07071765.2 ENSRNOG00000051645 ENSRNOT00000080648 2 1 1 101 8 130243160 130243178 AATATGCAGGTGTCCAGCT 59 130246377 130246395 GCCTGAATCCAAAGTTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058788.2 ENSRNOG00000056137 ENSRNOT00000078882 3 1 1 81 7 137535121 137535645 GATGTGTCATTCACTTGAACGA 59 137535687 137535705 TCCTGGACTAAGGTTGCAG 59 Novel Rattus norvegicus 81 AABR07009031.1 ENSRNOG00000061466 ENSRNOT00000081329 2 1 1 82 2 84239630 84239648 GTGGCTACCAACAAGTGAC 59 84230196 84239586 AGAGTTATCACAACACTCCCA 59 Novel Rattus norvegicus 81 AABR07071817.1 ENSRNOG00000051893 ENSRNOT00000089025 2 1 1 61 8 132405848 132405866 ATGGATGAAGCCCTGAGTC 59 132402863 132402882 TGCGTTAGTCTAGAATGGCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07058838.1 ENSRNOG00000056773 ENSRNOT00000081717 1 1 1 102 7 138983467 138988986 CCTCTGTCTGATCTTGAATAAGAG 59 138983388 138983409 TCTCTGAAGCACAAATCTTCTC 59 Novel Rattus norvegicus 81 AABR07009247.1 ENSRNOG00000051687 ENSRNOT00000080050 1 1 1 80 2 90246029 90251029 GTCCTACAGAGAAATATGAAGGC 59 90245971 90245992 ATTTCTTTGCAGGTCGTAATGG 60 Novel Rattus norvegicus 81 AABR07009638.2 ENSRNOG00000051963 ENSRNOT00000084802 1 1 1 95 2 106739331 106739351 CACATTTATGGCAGAAGAGGT 58 106741767 106741788 GCATTGTGTCAGTTTAATTGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07009639.1 ENSRNOG00000053422 ENSRNOT00000088480 1 1 1 80 2 106849289 106849310 ATTGACTGGAATCCATCATGAC 59 106849345 106850662 CCTTTATGTAGGGTTCATTGTAGTC 59 Novel Rattus norvegicus 81 AABR07009824.1 ENSRNOG00000056392 ENSRNOT00000083360 2 1 1 87 2 113907592 113907612 GAGAACCAGAATTACTCCAGG 58 113907660 113956749 AAACAAGACTCTGTGTAGCC 58 Novel Rattus norvegicus 81 AABR07010031.1 ENSRNOG00000055532 ENSRNOT00000089323 2 1 1 80 2 121240871 121240889 AGAAGATGGTCCAGGACCT 60 121240930 121243494 GAAGGAATCCTTTGTCTTCAGC 60 Novel Rattus norvegicus 81 AABR07010385.1 ENSRNOG00000052107 ENSRNOT00000085550 2 1 1 80 2 133881672 133881695 CCTCACTAAAGCAGACTTTAAGAC 60 133881733 133881880 CTAGTTTCTCTGTAGCCGCT 59 Novel Rattus norvegicus 81 AABR07010592.2 ENSRNOG00000059218 ENSRNOT00000078727 1 1 1 115 2 142079488 142084821 GTTCTTAGGAATTCCTGGTGG 58 142079393 142079412 CTTAACCTCTGAGCTGTCTC 58 Novel Rattus norvegicus 81 AABR07011084.2 ENSRNOG00000060521 ENSRNOT00000078172 2 1 1 131 2 157392332 157392350 GATCTGAGCCAGTGATCGT 59 157392445 157402613 GTCTCCAGCTTCTCCTCTG 59 Novel Rattus norvegicus 81 AABR07011434.1 ENSRNOG00000058603 ENSRNOT00000083999 2 1 1 64 2 162021747 162022789 TTTCCTTCTTACAGCAGCA 57 162022816 162022835 AATCAGGCTTCATACTTGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07011746.1 ENSRNOG00000053955 ENSRNOT00000080573 2 1 1 80 2 167987438 167996086 AGAAAGAAACCCAAAGGAACAG 59 167996126 167996145 TCTGTCTGTGATGTTCTGCA 59 Novel Rattus norvegicus 81 AABR07011908.1 ENSRNOG00000057062 ENSRNOT00000083621 1 1 1 80 2 175661879 175661898 ACTGTGTCCAGATAGCAGAG 59 175661260 175661836 AGTTCCAGACTGCTTCCAG 59 Novel Rattus norvegicus 81 AABR07014317.1 ENSRNOG00000053286 ENSRNOT00000080564 1 1 1 125 14 9101543 9101561 TTAAGCACTCGCTTCTGTC 58 9100314 9101455 TAATCTGTCGTTCTTGGCAG 58 Novel Rattus norvegicus 81 AABR07012774.2 ENSRNOG00000055255 ENSRNOT00000079542 1 1 1 80 2 207870618 207870636 AAGAACAGCAACAGCAGTG 59 207870679 207871614 CTGGGATGACATATCAGGGA 58 Novel Rattus norvegicus 81 AABR07013157.2 ENSRNOG00000052653 ENSRNOT00000088658 1 1 1 76 2 225143154 225143172 TCTCTTTCTGAAGGGCGTG 60 225143212 225143953 TTAGGTGAGGAAAGGGCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013365.1 ENSRNOG00000058246 ENSRNOT00000085046 1 1 1 111 2 234491504 234493137 TATGACTGCAGGTTTGACG 58 234491411 234491430 TTTATCCATGCCTGGAAGTC 58 Novel Rattus norvegicus 81 AABR07013410.1 ENSRNOG00000052248 ENSRNOT00000080258 1 1 1 73 2 236007074 236007092 AAAGCTGACTTGCCAACAC 59 236011043 236011061 TGTCAGCTACCAACCATCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013477.2 ENSRNOG00000059314 ENSRNOT00000091629 1 1 1 80 2 239063759 239063777 AAAGATCTGGACGTGTCTG 57 239063821 239066595 CTGGCGTTATAGTAGGCTG 58 Novel Rattus norvegicus 81 AABR07013653.1 ENSRNOG00000059088 ENSRNOT00000090535 2 1 1 80 2 248544276 248545254 CTCTTATCCTTCAGGAGCG 57 248545296 248545316 TCTGAATCTCTTTCTCATGCC 58 Novel Rattus norvegicus 81 AABR07013701.1 ENSRNOG00000057834 ENSRNOT00000090803 1 1 1 80 2 251535215 251535233 CCTCTGCTGAGAGCTACAG 59 251535274 251606329 GTAGTGGAATTGTCTTCTCCAC 59 Novel Rattus norvegicus 81 AABR07013931.3 ENSRNOG00000061742 ENSRNOT00000080020 2 1 1 80 2 264213045 264215682 TCTGTCTTGCCTGAAAGGA 59 264215726 264215744 TTAGAGCTGGGTGTTAGGG 58 Novel Rattus norvegicus 81 Rn60_7_1158.3 ENSRNOG00000051088 ENSRNOT00000076749 1 1 2 104 7 115830351 115830370 CACTACGGACTCTCCTTCAG 59 115828725 115829948 CTGAGTCACCACTGTCCTC 59 Novel Rattus norvegicus 81 AABR07020994.1 ENSRNOG00000057663 ENSRNOT00000087794 2 1 1 61 13 51939271 51939291 CCTTACCAAGTCTCAACTTGC 59 51939315 51939333 GGTGGCATATGTCCTCCTC 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000059150 ENSRNOT00000077208 3 1 1 60 17 82845428 82845448 CGATACAGAGAAGATTAGCGT 58 82845470 82845488 AAAGCTTCACGAATTTGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063544.1 ENSRNOG00000005811 ENSRNOT00000007637 3 1 1 86 6 34554738 34554757 GGCTTAGATAAGAAGGTCGG 58 34554669 34554689 CTCGATAGTGAGGATTGACAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07038355.1 ENSRNOG00000053508 ENSRNOT00000087302 2 1 1 60 X 46934424 46934443 ATGTGATGACTCATCAGAGC 58 46934382 46934401 AGCAGGATACACAGTACTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC105624.1 ENSRNOG00000052106 ENSRNOT00000085615 3 1 1 74 3 76976093 76976112 ATGGGACTAACACAGAATCC 57 76976145 76976168 GACAGTAATGATGTAGGTGATGAG 59 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000052112 ENSRNOT00000085973 1 1 1 84 17 37178288 37178307 ATACCATGACCACAAAGGTG 58 37178354 37178372 CGAGTTTCCTGCATTTGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055267 ENSRNOT00000088460 2 1 1 60 4 62765763 62765781 GAGGGAACTGCATTCTGTG 59 62765802 62765823 ACAGGTAATTCCTACATCTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_6_0863.2 ENSRNOG00000051077 ENSRNOT00000082286 3 1 1 80 6 76685802 76700294 CGACAGCATTGTGAGAGTG 59 76700334 76700356 CTCAAGCCTTCTTATCTTCTCCT 60 Novel Rattus norvegicus 81 7SK ENSRNOG00000058274 ENSRNOT00000083845 1 1 1 60 4 121506861 121506879 CTGCACTCAGTTGAAGAGG 58 121506902 121506921 AGATACCTTGACCAAAGTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000053838 ENSRNOT00000081101 1 1 1 60 1 116710519 116710540 ACAACAGAAAGTCAAGAACAGG 59 116710480 116710500 TGAGCGTAATCCTATTGAGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008513.1 ENSRNOG00000056876 ENSRNOT00000078624 1 1 1 60 2 62904430 62904449 AAATACAGATTCTTGGGCCC 58 62904470 62904490 CCCACCCAGATTTACTTACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC259244 ENSRNOG00000009273 ENSRNOT00000046857,ENSRNOT00000012293 2 2 2 80 5 77432994 77433015 AGTGCAGGGAACTATATTTGGT 60 77246988 77432956 ATGTATTCCCTCCGTCATACTC 59 Novel Rattus norvegicus 81 LOC100909412 ENSRNOG00000050499 ENSRNOT00000043056 1 1 2 85 5 77433381 77433707 TGTGGACAAACTCAATGGG 58 77433314 77433332 CTCTCATGCTGCCATTCTC 58 Novel Rattus norvegicus 81 AABR07004881.1 ENSRNOG00000052319 ENSRNOT00000083641 2 1 1 76 1 165284442 165284463 TCCCACTGATATTTCTAAAGCC 58 165284501 165284519 GGTAGAGCAGGAAAGGTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07043861.1 ENSRNOG00000050382 ENSRNOT00000072715 2 1 1 138 19 44601340 44601359 ACCAAAGCAAATGCTAATCC 57 44600138 44600159 CTTGTTTACTTGTGTTGTCCTG 58 Novel DesignNoJunction Rattus norvegicus 81 SCARNA6 ENSRNOG00000054636 ENSRNOT00000084592 2 1 1 60 14 65281442 65281462 CTGAGAGTGAACAGTTCACAG 59 65281483 65281502 CAAGACTGCTGCATTATGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059528 ENSRNOT00000078613 2 1 1 60 3 165570769 165570789 ACGATACAGAGATTAGCATGG 58 165570729 165570748 GAACACTTCAGGATTTCGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000053938 ENSRNOT00000091915 3 1 1 60 1 56864840 56864861 CTACAGAAAGTCAAGAACAGGA 58 56864801 56864821 CTCAGCGTAATCCTATTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059639.1 ENSRNOG00000052925 ENSRNOT00000089564,ENSRNOT00000087619 1 2 2 80 4 29561556 29561575 GAAGGCTCTAGAAAGAACCC 58 29561617 29562205 CCAGTAGTAATCGCTCTTCC 58 Novel Rattus norvegicus 81 AABR07001519.1 ENSRNOG00000055547 ENSRNOT00000089439 1 1 4 89 1 49618238 49681762 CAGAGGTCCAGCTAAACCC 60 49618167 49618185 TGAACTCGGAGTTTCCCAG 59 Novel Rattus norvegicus 81 AABR07006111.1 ENSRNOG00000020409 ENSRNOT00000027660 3 1 1 80 1 220610839 220610857 TCACCTTCTCATCCAGTGG 59 220610900 220610923 CCTTAGAGACCATGCAAGTG 58 Novel Rattus norvegicus 81 AABR07042565.1 ENSRNOG00000052151 ENSRNOT00000077592 1 1 1 80 19 31502 31520 GTTCTGGACCGAGACTCTG 60 30813 31003 GTGTCTAGAACAGAATCACAAGG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000059719 ENSRNOT00000083762 2 1 1 60 10 97019575 97019595 TTATTGATCCGTTTGCCTCCT 60 97019616 97019635 CCTATCAAGAAGGCATGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000058788 ENSRNOT00000086895 3 1 1 63 14 86964960 86964978 AATGAGGTTTATCCGAGGC 57 86964915 86964934 ATACTGACTGGATTCTGGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057636 ENSRNOT00000089047 1 1 1 60 2 94735136 94735155 AATGGCAGTATCACAGTCAG 58 94735095 94735116 GCCTTCCAATTAGCAATAATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000055132 ENSRNOT00000084843 1 1 1 60 6 83452074 83452095 TTTCCTTCAATGTCCATGTGAG 59 83452116 83452134 AGAAGGCCTCTTCTACCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059778.1 ENSRNOG00000061072 ENSRNOT00000086248 3 1 1 90 4 34962367 34962386 GTAAACAGGTGAAAGCCAGG 59 34962438 34962461 TGCATTCGGTCTTCTAGAGG 59 Novel Rattus norvegicus 81 AABR07002973.1 ENSRNOG00000050148 ENSRNOT00000074615 2 1 1 80 1 90949328 90949349 ACCTTTCTCTGTCTGTCACC 59 90949267 90949287 AGTGATGCCCTAAAGAATCCT 59 Novel Rattus norvegicus 81 AC080157.1 ENSRNOG00000058277 ENSRNOT00000091377 1 1 2 80 1 254560174 254560197 CTTGTTCTCCATGAGTATCTTCAG 59 254569901 254569996 ATGAGAGCTCCACAGATACAC 59 Novel Rattus norvegicus 81 Col4a4 ENSRNOG00000014851 ENSRNOT00000077036,ENSRNOT00000077503 2 2 4 100 9 88282556 88282574 GTAATGTAACCTACCCGGG 57 88280155 88280173 ACATCTCATACCAGGAGCC 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_2_2279.3 ENSRNOG00000048272 ENSRNOT00000076304 2 1 2 119 2 208383459 208383477 TGACAACAGAGAAGACCGG 59 208385092 208392611 GATCAGAATGGACATTCGGG 59 Novel Rattus norvegicus 81 AC120922.2 ENSRNOG00000060225 ENSRNOT00000079172 1 1 1 87 9 95346328 95346346 AAATTGGGTGAAGTCAGGC 58 95346446 95346464 TAGCAACACTGGTAGAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AC120922.2 ENSRNOG00000060225 ENSRNOT00000079172 2 1 1 88 9 95346328 95346346 AAATTGGGTGAAGTCAGGC 58 95346447 95346465 GTAGCAACACTGGTAGAGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07022168.1 ENSRNOG00000059863 ENSRNOT00000082906 3 1 1 197 13 110678178 110678196 AATGTGTTCTTCTGCGTGG 59 110673859 110673877 CATGACTGCAGAACTTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052848.1 ENSRNOG00000061249 ENSRNOT00000077487 3 1 1 64 3 79151578 79151596 TTATTCAAGCTTGCCTGCA 58 79151530 79151548 ATTAGACCACTGTTGGCCA 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000053320 ENSRNOT00000082311 3 1 1 60 13 536880 536902 GATACAGAGAAGATTAGCATGGC 59 536921 536940 GAACGCTTCACAAATTTGCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061627 ENSRNOT00000077801 3 1 1 60 18 18835613 18835632 GGTTACTGTGTCACATGTGG 59 18835650 18835673 GAACATATACATGGCCTATCTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067401.1 ENSRNOG00000052359 ENSRNOT00000078676 2 1 1 119 9 43086369 43086387 AACTTGTTGCTGCACAGAG 59 43086470 43086488 GCCTAATAGGCTCCCTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0752.3 ENSRNOG00000051257 ENSRNOT00000076871 2 1 2 80 X 74337639 74337657 ATCCAGTTCAGGATCCAGG 59 74334962 74337596 TCCAGATTCACCCTGTACTC 59 Novel Rattus norvegicus 81 AABR07060700.1 ENSRNOG00000060808 ENSRNOT00000083879 2 1 1 62 4 89960564 89960582 CTGCTGAGGATCCCTTACC 59 90089656 90089675 TGGATTTACCTGCTAGGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 LOC100912599 ENSRNOG00000023387 ENSRNOT00000076091 2 1 2 148 1 31264854 31264872 GGAGAAGATCACGCATACC 58 31265857 31267619 CGACAAATACTCTTTCTGACGA 59 Novel InUTR Rattus norvegicus 81 AABR07055174.1 ENSRNOG00000058180 ENSRNOT00000091013 2 1 1 60 7 380943 380961 AGTTCAGCAACCTCTACGT 59 381677 381695 TGGAGATGATGCCATTGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006025.1 ENSRNOG00000057858 ENSRNOT00000079582 2 1 1 64 1 214009830 214009848 AAGGAACTCAGGACACTGC 60 214009782 214009800 ATTTCAAAGCGTGGTTGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014823.1 ENSRNOG00000051616 ENSRNOT00000082644 2 1 1 60 14 32773478 32773497 TTGATACTCAACTGCCTGAG 57 32770339 32770360 AGGTGCTTTCCAGTATTATCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07046804.1 ENSRNOG00000057121 ENSRNOT00000086945 2 1 1 60 5 7577079 7577099 TGATCTCATCTTGGAAAGCAG 58 7577473 7577492 CTGTTCCTCAGAACATTGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07015468.1 ENSRNOG00000055970 ENSRNOT00000090766 2 1 1 61 14 58282725 58282743 TTCATTTCAGCGACATGGA 58 58289730 58289748 TAAATTCAGTGGCCATGCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07030086.2 ENSRNOG00000056575 ENSRNOT00000083338 3 1 1 73 10 66654459 66654477 GGAGTTGAGTCTAGCAGCC 60 66652844 66652862 TCTCTTCGGTCTCTTCCCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07000714.1 ENSRNOG00000051597 ENSRNOT00000081325 3 1 1 63 1 24073421 24073439 CACCTAGGCAGACTCAGAG 59 24072674 24072692 GTCCTCCAGATGTCAACAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07016573.1 ENSRNOG00000054236 ENSRNOT00000083161 2 1 1 96 14 104764454 104764472 CCTGTACTGGCAGGATCTC 59 104768582 104768600 GGAGATGCTTGCAGAACAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049491.1 ENSRNOG00000055591 ENSRNOT00000086229 1 1 1 60 5 123667092 123667111 TGCAGACGAGTTATTATGCC 58 123663580 123663598 TGTTCTCCACCATCAAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 LOC103692471 ENSRNOG00000058834 ENSRNOT00000089677 1 1 2 101 5 142405843 142405861 CAATGACACATACCGGGAC 58 142405338 142405779 GGCATGAACTTGTCATTGAC 58 Novel Rattus norvegicus 81 AABR07063613.1 ENSRNOG00000053708 ENSRNOT00000089368,ENSRNOT00000087093 3 2 2 81 6 37195835 37199500 GGGACAAGAACAGGATGGA 59 37199543 37199563 CTTCCCTGAGAAGTGAATTGC 59 Novel Rattus norvegicus 81 AABR07050487.1 ENSRNOG00000054768 ENSRNOT00000087028,ENSRNOT00000091421 3 2 2 95 5 167072664 167072682 CAGAATCTGGAAGCCAAGG 58 167081100 167081119 TCAAGTTGTTTGTCTGGACG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019086.1 ENSRNOG00000053968 ENSRNOT00000088122 3 1 2 86 15 87456926 87470768 AGATGGAAGAGATGCAAGC 58 87456858 87456876 CAGTCAAACCTCACAGAGC 59 Novel Rattus norvegicus 81 AABR07064172.1 ENSRNOG00000055802 ENSRNOT00000085009 3 1 1 66 6 67771838 67771856 ATTGGACCTCTGTGCTACC 59 67775161 67775182 CTTAAATTTCCATCCTGCTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07019442.3 ENSRNOG00000061422 ENSRNOT00000090589 1 1 1 70 15 105845853 105845877 GAATAGGGCTTACATAGACATAGAC 59 105849424 105849442 CATGGACGTTTGGTTCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07020809.1 ENSRNOG00000060765 ENSRNOT00000087036 2 1 1 77 13 41853473 41853495 TCAGAGTGGAGACTAATGTTCAG 60 41860734 41860753 TACTCCAAGTGAAGGCTGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07034669.2 ENSRNOG00000056957 ENSRNOT00000086326 3 1 1 61 11 83377005 83377023 CTCATGGAAGTTGGTCGGT 60 83375959 83375977 GTGTGGATGAGCAGAAGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065814.5 ENSRNOG00000055537 ENSRNOT00000084386 1 1 1 74 6 142405367 142405385 TGTTGGTCCTGAAGTTGGT 59 142405206 142405224 CAGACTCAACAAGCTGCAC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07035273.1 ENSRNOG00000055687 ENSRNOT00000083249 1 1 1 62 12 9332088 9332106 CCTCTTCGAGTCTCCTCCT 60 9332604 9332624 CACTTCGGTTCTTCAATTGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07072272.1 ENSRNOG00000053832 ENSRNOT00000080425 2 1 1 115 12 13450394 13450412 CTGTTTCTGCTGCTTCCTG 59 13450823 13450841 CTCCACATGCCTCTGTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07024799.1 ENSRNOG00000059678 ENSRNOT00000086383 1 1 1 65 16 17139384 17139402 TTGGAGACAGTTCTGGGTG 59 17138136 17138154 TTACAGTGTGCTACACGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07053681.3 ENSRNOG00000061882 ENSRNOT00000085809 2 1 1 60 3 120257559 120257579 GCATCTCATCATTGCTAGACG 59 120259534 120259557 GAATAACTCAGCTCTAGGAATGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07024833.1 ENSRNOG00000058158 ENSRNOT00000089685 3 1 1 64 16 18598121 18598139 ACACAGTCATCTGCAGAGG 59 18601927 18601945 ATGCCATCAAACTTTGCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07036301.1 ENSRNOG00000059211 ENSRNOT00000084584 3 1 1 84 12 36812689 36812708 TTTACTGGGCTGATGGATGG 60 36813653 36813672 GGTACAGGATAGAACGAGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07026002.2 ENSRNOG00000055187 ENSRNOT00000085171 2 1 1 61 16 58777739 58777759 CAGCCAGGATAGAAGAGTCTG 60 58774438 58774456 TCTTGCCATTCCCATTTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07036426.1 ENSRNOG00000057983 ENSRNOT00000080357 1 1 1 60 12 42902412 42902431 ACACGATGCTAACTAAGCAC 58 42899744 42899762 GACTCTTCCTCTGGGTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07037943.1 ENSRNOG00000051958 ENSRNOT00000083877 2 1 2 80 X 35983909 35984119 AGAAGACCATATCTACGCCT 58 35983848 35983866 CAATGCTGATGTCCTGTCC 59 Novel Rattus norvegicus 81 AABR07056517.1 ENSRNOG00000057959 ENSRNOT00000087144 1 1 1 111 7 28372076 28372094 TTAAGCTAACGGAAGTGGG 57 28372330 28372350 CAAGATCTGGAGGTATTTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07042690.1 ENSRNOG00000061663 ENSRNOT00000080904 2 1 1 60 19 3742504 3742522 TTGGCAATTTCGTTTGGTC 57 3734252 3734272 TACAAAGGTCTTCTGAAGCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07040736.1 ENSRNOG00000055206 ENSRNOT00000090863 2 1 1 65 X 108894043 108894061 GAGTGGCTGAATTTGCAGG 60 108894915 108894933 TCTCCAGAGATGAATGGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044418.3 ENSRNOG00000061105 ENSRNOT00000088736 2 1 1 114 20 5318625 5318644 TCTTGTGTTTCAGGGAGTCC 60 5317911 5317929 CACCTGAGTTCCAGGAGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07028262.1 ENSRNOG00000057362 ENSRNOT00000083057,ENSRNOT00000078651 2 2 2 81 17 62682428 62682446 ATTTAGCTCCCAGTCACGA 58 62673388 62682383 AAAGTCACGTTTCGAGCTC 59 Novel Rattus norvegicus 81 AABR07059380.1 ENSRNOG00000055278 ENSRNOT00000077174 3 1 1 66 4 16953184 16953202 ATTCAGCCTAAGTCCTGCG 60 16951450 16951471 CATAAACTTCCCTCCATTGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044717.1 ENSRNOG00000055750 ENSRNOT00000082808 3 1 1 62 20 18258561 18258581 CTCCAAGGAGATTTCTCAACC 58 18248164 18248185 CGTTTACGAACTAAATGGATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028499.1 ENSRNOG00000051375 ENSRNOT00000077379 2 1 1 70 17 72120205 72120225 CTGCAGTAAATACGCAAACAC 59 72121758 72121776 CTAATTAAGGCACGCCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044841.1 ENSRNOG00000061380 ENSRNOT00000078177 2 1 1 61 20 23359529 23359547 TTCAACCAACACCTGTCCA 59 23351284 23351302 TCTGGTCTTTGCTACACCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07045217.1 ENSRNOG00000054465 ENSRNOT00000083465 1 1 1 60 20 38137073 38137094 TTCTGACATCCATTCTATCCAG 58 38140137 38140155 TCAGAGGGCAGTATGAGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07060235.1 ENSRNOG00000052478 ENSRNOT00000089153 3 1 1 117 4 63698700 63698718 TTTAACACTGAGCCACACC 58 63631492 63631510 GTAGAAGGGAGGTAGGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07060341.3 ENSRNOG00000061613 ENSRNOT00000078712 1 1 2 80 4 68437730 68440073 AATTCAAACCTGAAGGTTGC 57 68440115 68440134 GTAGATGTCCCACTCAACTG 58 Novel Rattus norvegicus 81 AABR07008568.1 ENSRNOG00000058937 ENSRNOT00000081901 1 1 1 91 2 65011788 65011806 AATCAGCACTCACTGACGT 59 65010645 65010665 GTTCTCCATAGAAAGTGTGCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058722.1 ENSRNOG00000058598 ENSRNOT00000090880 3 1 2 60 7 134985957 134985975 CGAACAAAGACCATCCGAG 59 134988452 134988471 GCCACGATTCTATCACAACG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07071779.1 ENSRNOG00000053916 ENSRNOT00000089287 3 1 1 60 8 130967903 130967922 CACTTTCTGCACTTGAACTG 58 130967654 130967673 CTAAAGTACCTGACAGCAGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07058788.3 ENSRNOG00000057179 ENSRNOT00000085055 2 1 1 83 7 137542324 137542344 AGGAGATGGTAATCCACACTG 59 137543424 137543442 GAAAGACGAGCCAACAGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044186.1 ENSRNOG00000056378 ENSRNOT00000085990 1 1 1 60 19 61789227 61789245 TGGCTCCAGTAAACAAGAG 57 61784876 61784896 ACCTTTCTTGGCTACATTTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010763.1 ENSRNOG00000055189 ENSRNOT00000081158 2 1 1 67 2 150686754 150686774 CAACCTCCATGGTCTAATCTG 58 150689275 150689293 GGAACGTCCCTATCATGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07010986.1 ENSRNOG00000051495 ENSRNOT00000082520,ENSRNOT00000089440 1 2 2 60 2 156405563 156405581 TAGGAGGACAGGAACAACC 58 156399635 156399653 GGTGATGTGGTCCCATCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07013324.1 ENSRNOG00000051979 ENSRNOT00000091184 3 1 1 135 2 233542058 233542076 CTTATCTGCATGTGCGGAG 59 233538781 233538799 TAACCGGACGTAAGCTGTG 60 Novel DesignNoJunction Rattus norvegicus 81 Dmbx1 ENSRNOG00000010835 ENSRNOT00000057055 2 1 1 84 5 134772748 134772766 TCATTACCCAGACGTGGTG 59 134772472 134772700 GTTCTTGAACCACACCTGC 59 NA Rattus norvegicus 81 Elovl7 ENSRNOG00000010450 ENSRNOT00000014074 3 1 1 80 2 40377562 40382726 CAAATTTGCTGCAGGTGGT 60 40377500 40377523 CCATAGTAGAAATACATGACCACG 59 NA Rattus norvegicus 81 Fnip2 ENSRNOG00000027833 ENSRNOT00000090152,ENSRNOT00000038543 3 2 2 80 2 178277264 178277384 AGATACACTACATACGATCTCCTC 59 178277207 178277225 TACTTCCACAGAAGCTGCC 60 NA Rattus norvegicus 81 Kif2a ENSRNOG00000014000 ENSRNOT00000019189 2 1 1 80 2 38169532 38171726 GATAATAGAGTGGTTGGTTCAGC 59 38169474 38169492 GCTACCATTCTGTTGTGCA 59 NA Rattus norvegicus 81 Anxa9 ENSRNOG00000021134 ENSRNOT00000028693 1 1 1 80 2 196477305 196477323 ATGTACTGACCAATCGCAG 58 196477036 196477263 TCAATAGATCCTGTTTGGTGC 58 NA Rattus norvegicus 81 MGC109340 ENSRNOG00000046858 ENSRNOT00000075521 1 1 1 60 X 106488425 106488443 CCTCTTGTGACTGGATCTG 57 106488464 106488485 TGGCTATTTCATAGGAATCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sec24b ENSRNOG00000023373 ENSRNOT00000038509 3 1 1 80 2 230295917 230298148 ACATCAAGCAAAGGTGAGC 59 230295855 230295874 TGCATAAACATCAGCCAGTG 59 NA Rattus norvegicus 81 Atp12a ENSRNOG00000020685 ENSRNOT00000028093,ENSRNOT00000091753 1 2 2 80 15 36581668 36582521 CGGGATCAAGGTTATCATGG 58 36582562 36582582 GCCGATATGATTCCTACACTC 58 NA Rattus norvegicus 81 Atp12a ENSRNOG00000020685 ENSRNOT00000028093,ENSRNOT00000091753 2 2 2 80 15 36579954 36579972 AGCTCTGCTGATAGCTTCC 59 36580015 36581518 GTAGAGGTGACAGAAACCCA 59 NA Rattus norvegicus 81 Cers2 ENSRNOG00000021138 ENSRNOT00000028699,ENSRNOT00000080324 2 2 2 80 2 196494258 196494276 TTGCCAATTATGTCCGAGC 59 196494320 196494491 ACATCTTGGCAGACTCCAG 59 NA Rattus norvegicus 81 Cysltr1 ENSRNOG00000037845 ENSRNOT00000042799 2 1 1 60 X 77675283 77675304 AATTCCGAAATCAGGTGTACTC 59 77675244 77675262 CCAAAGAAACCCACAACGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olfm3 ENSRNOG00000017969 ENSRNOT00000024243 2 1 1 80 2 218000424 218002199 ATAACAGAGTCTGGTACATGG 57 218002239 218002259 CACTAACAAAGTCTGCAATGG 58 NA Rattus norvegicus 81 Mir3597-2 ENSRNOG00000035628 ENSRNOT00000053751 3 1 1 67 2 11884716 11884739 CGGTTATCTAGCTTTATGAAGACC 59 11884672 11884693 GAAGCGAGTTGTTATCTTTGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC682408 ENSRNOG00000050215 ENSRNOT00000071981 1 1 1 118 20 3706725 3706743 GAAAGACTGGCTCCAACAG 59 3706598 3706616 TGAAGAACTTCCCTGGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Gzmbl3 ENSRNOG00000046301 ENSRNOT00000045209 1 1 1 80 15 36112996 36113154 CTATTAAAGCTGAAGAGTAAGGCC 59 36112939 36112960 CTTCACTTTGAAGTTGCTTCTG 59 NA Rattus norvegicus 81 Vom2r47 ENSRNOG00000028345 ENSRNOT00000057657 1 1 1 90 2 155381621 155381641 GCAGGAATTATTGGATCAGGG 59 155378937 155381570 AAGTATAGCCCACCTGACTC 59 NA Rattus norvegicus 81 LOC100359563 ENSRNOG00000029843 ENSRNOT00000043008 1 1 1 60 8 93439785 93439806 GAATCTGAAAGTGAAAGGACCA 59 93439824 93439845 TCTGGTAGTGATTCTCAATGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klf17 ENSRNOG00000019479 ENSRNOT00000026344 3 1 1 86 5 136604719 136604739 TGCTCATATGATGACTGTGGA 59 136603478 136604671 GTAGGGCTTCTCACCTGTG 60 NA Rattus norvegicus 81 Gmpr2 ENSRNOG00000020216 ENSRNOT00000067150,ENSRNOT00000084554 1 2 2 80 15 34356666 34356685 GCCATCCATAAGCACTACAG 59 34356727 34356898 GGCAGCTAGATACTCAAGAC 58 NA Rattus norvegicus 81 Arih1 ENSRNOG00000009887 ENSRNOT00000013581,ENSRNOT00000084758 3 2 2 80 8 64184030 64184049 ACCAGAACTGTAAAGCAGAG 58 64179762 64183987 GGTTACAGTTGTACCAGGC 58 NA Rattus norvegicus 81 Ybx1 ENSRNOG00000023786 ENSRNOT00000015875 1 1 1 80 5 138335748 138335768 CAATGTAAGGAACGGATACGG 59 138325080 138327199 TTCTTTATGGCCGTCTGGT 59 NA Rattus norvegicus 81 Gzmb ENSRNOG00000045973 ENSRNOT00000059660 1 1 2 80 15 36470545 36470691 TGTTAAAGCTGAAGAGTAAGGC 59 36470486 36470504 GTTTCACTTTGACGTTGCG 59 NA Rattus norvegicus 81 Lmna ENSRNOG00000019638 ENSRNOT00000026705,ENSRNOT00000082174,ENSRNOT00000084455 1 3 3 85 2 187848282 187848490 TACAGTGAGGAACTGCGTG 60 187848215 187848233 CTCTCAAACTCTCGCTGCT 60 NA Rattus norvegicus 81 Syap1 ENSRNOG00000004304 ENSRNOT00000006584 3 1 1 81 X 33559676 33560134 AAATCAAGAGGACGAAGAGGA 59 33560175 33560195 TAAGTTACAGGCATCAAAGGC 59 NA Rattus norvegicus 81 Ttc33 ENSRNOG00000013217 ENSRNOT00000017665 1 1 1 80 2 54903031 54921913 AAACAAACGGTATCAGGAGG 58 54921956 54921974 ATCTCATAAAGGGTGGCGT 59 NA Rattus norvegicus 81 Med8 ENSRNOG00000028477 ENSRNOT00000067237 1 1 1 60 5 137243340 137243598 TTCTAGAAGTCCATTCTAGGGA 58 137243619 137243637 AAGCTGACTTGATGTTGGT 57 NA DesignNoJunction Rattus norvegicus 81 Htr1b ENSRNOG00000013042 ENSRNOT00000017411 2 1 1 60 8 89130050 89130068 CGAGCCCAGTTGATAACAG 58 89130008 89130026 GGGAGTTAATGGAGGTGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ulk3 ENSRNOG00000038459 ENSRNOT00000025885 1 1 1 80 8 62373923 62374069 AAGGAGCAGATCAAGATCAGG 60 62374111 62374129 ACTTCGAACAGACTCCGAC 60 NA Rattus norvegicus 81 Olr1549 ENSRNOG00000057043 ENSRNOT00000083800 1 1 1 60 11 43487679 43487698 TCCCTCTATCTCAGGAAGCA 60 43487719 43487739 ATGACTGCATAAAGCACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1549 ENSRNOG00000057043 ENSRNOT00000083800 3 1 1 60 11 43487680 43487699 CCCTCTATCTCAGGAAGCAG 59 43487719 43487740 TATGACTGCATAAAGCACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1533 ENSRNOG00000054480 ENSRNOT00000046587 3 1 1 60 11 45616370 45616391 CAGAGGAATAACAGATCTTCCA 57 45616331 45616350 GATGAGGAAGAACACCAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_1340.1 ENSRNOG00000051108 ENSRNOT00000077007 1 1 1 60 1 132891870 132891888 CCAGAACCCATACCCTGAC 60 132891912 132891930 CGTGAGAAGACCTAGTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nup155 ENSRNOG00000013411 ENSRNOT00000082694,ENSRNOT00000046069 3 2 2 80 2 57249180 57249198 TTCCACTGCCATTTCATCC 58 57249242 57250111 TGGATCCTAGCAACTTCCA 58 NA Rattus norvegicus 81 Olr453 ENSRNOG00000055374 ENSRNOT00000084321 3 1 1 60 3 73089838 73089859 TGACATACGGATCAACAAACTG 59 73089878 73089898 ACTGACAACTAATACAGCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rhcg ENSRNOG00000015526 ENSRNOT00000021109 2 1 1 80 1 141336222 141336243 TGCTCATTATGACCTTCTTCCA 60 141334481 141336183 CATCCTTTGCCTCTATCAGGT 60 NA Rattus norvegicus 81 Srpr ENSRNOG00000010543 ENSRNOT00000015177 2 1 1 80 8 36411528 36411548 ACAACTCTTTCACTCATGAGG 58 36411590 36411880 GAAAGCCAACCACAAACAC 58 NA Rattus norvegicus 81 RGD1565536 ENSRNOG00000028910 ENSRNOT00000092158,ENSRNOT00000045362 1 2 2 80 3 110552673 110552692 TCTGTGACATCCACCATAGG 59 110552081 110552632 TTCTTTGACATCACACCTTCG 59 NA Rattus norvegicus 81 Cops5 ENSRNOG00000006499 ENSRNOT00000008877 1 1 1 80 5 8880400 8880894 TTTGTAGCAGTGGTGATTGAC 59 8880933 8880954 CTTTGGATATGTCCTAAAGGCG 59 NA Rattus norvegicus 81 Nop9 ENSRNOG00000020321 ENSRNOT00000027604 3 1 1 80 15 34438395 34438413 GCTTCCTTGTTGGCTTACG 60 34438455 34438636 CATTTCTACCTGATGCTCTGC 59 NA Rattus norvegicus 81 LOC684395 ENSRNOG00000048319 ENSRNOT00000072574 1 1 1 128 8 107107388 107129522 GCTTCCAGGAAAGTCTCTG 58 107129614 107129632 TTATGGAGGAAAGGCTCCC 59 NA Rattus norvegicus 81 Adam2 ENSRNOG00000017027 ENSRNOT00000066478 3 1 1 80 15 42741844 42746866 GCAGAAGTTTCAGAATATCTGC 58 42741785 42741805 GTACATGTGCTAACAATCACC 57 NA Rattus norvegicus 81 Atp11c ENSRNOG00000003472 ENSRNOT00000051319 3 1 1 80 X 143409315 143419775 CGAATCCAATTGCAAGACAC 58 143409254 143409273 GCTCGGAGATTATCAATGGA 57 NA Rattus norvegicus 81 AABR07012291.1 ENSRNOG00000029760 ENSRNOT00000064950 1 1 1 207 2 192381697 192381715 TGTCTTACCAACAGCAGCA 60 192305648 192305666 TCTGTGCACTTTGGAGGAG 60 NA DesignNoJunction Rattus norvegicus 81 Taar7b ENSRNOG00000046302 ENSRNOT00000021559 2 1 1 60 1 22519523 22519544 GAAACTGAACAGATCCTGTGTC 59 22519484 22519502 ATAAAGGATGAGGCGAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asb14 ENSRNOG00000013346 ENSRNOT00000017995 1 1 1 80 16 2546789 2549194 TCCTCTTCTTACAGCTGTTCTG 60 2549234 2549253 CGAAGATTGACATTCGCTCC 60 NA Rattus norvegicus 81 Scube3 ENSRNOG00000000500 ENSRNOT00000000593 3 1 1 80 20 7728043 7728674 ATTGCAAAGACGTGGATGAG 59 7728714 7728735 GGTAATTACCAGGGATGTTGAC 59 NA Rattus norvegicus 81 Fgg ENSRNOG00000025074 ENSRNOT00000034521 1 1 1 80 2 181993711 181993735 GAAGATAATTCCCTTCAACAGACTC 60 181993772 181994323 ATGTCTCCAACCTGTTTGGA 59 NA Rattus norvegicus 81 Ppp1r12c ENSRNOG00000053828 ENSRNOT00000086122 2 1 1 80 1 72923919 72923937 GAGGAGTCTGAGTCTCAGC 59 72923980 72924084 TGTCAAAGTTACACCCTGTG 58 NA Rattus norvegicus 81 Cyp2b12 ENSRNOG00000031529 ENSRNOT00000041580,ENSRNOT00000084936 1 2 2 80 1 83513153 83513172 GACCAAGCTGAAGCTTTCTC 59 83513213 83513375 GGCAAAGATCACACCATATCC 59 NA Rattus norvegicus 81 Mogat2 ENSRNOG00000027228 ENSRNOT00000035774 1 1 1 80 1 164196175 164196193 GGCCCATCCAATTCTTCAG 59 164186153 164196132 CAGCTGTCTTGACCAAAGAG 59 NA Rattus norvegicus 81 Ccdc32 ENSRNOG00000010472 ENSRNOT00000013963 3 1 1 81 3 110821158 110821176 GGATCGATTCCTCCAGGAG 59 110818207 110821115 GAAATGTTCCAAGGTGCTCTC 60 NA Rattus norvegicus 81 Sult2a1 ENSRNOG00000047986 ENSRNOT00000085775,ENSRNOT00000064593 1 2 6 80 1 76515642 76517007 CCAAGTCAGGAACGAACTG 59 76515580 76515600 GCATAGATTGGATCCACTTGG 59 NA Rattus norvegicus 81 Ccdc66 ENSRNOG00000028380 ENSRNOT00000039311 3 1 1 80 16 3116337 3117422 AGAACACCAGAAAGCAATCAC 59 3116277 3116297 TCCTTCCTTCTCTGTTCTTCC 59 NA Rattus norvegicus 81 Gkap1 ENSRNOG00000019272 ENSRNOT00000026070,ENSRNOT00000083408 1 2 2 80 17 6799338 6799357 TCTGAAATGTTTGAAGCCGA 58 6799398 6802162 TTCATAATCCTGTCTGTGCTC 58 NA Rattus norvegicus 81 Slc26a7 ENSRNOG00000006096 ENSRNOT00000088165,ENSRNOT00000067331 2 2 2 81 5 27994540 27994558 TCTTTGGTCCTGAATTGCA 57 27990844 27994495 TGCAATCAAGGTAGAGCTC 57 NA Rattus norvegicus 81 Irf4 ENSRNOG00000061070 ENSRNOT00000088931 1 1 1 80 17 34896615 34896635 GGCCCAACAAACTAGAAAGAG 59 34892431 34896575 GAGCAAACACTTGTAGCTCTG 60 NA Rattus norvegicus 81 Ppp1r14b ENSRNOG00000021151 ENSRNOT00000051749 2 1 1 80 1 222231216 222231237 CATGGAAAGTGATGATACTCGG 59 222231506 222231617 GAGATGAAGGCCTCAGTGG 60 NA Rattus norvegicus 81 Nfkbiz ENSRNOG00000031163 ENSRNOT00000041116,ENSRNOT00000078856 2 2 2 81 11 47268415 47268435 GAGGAAGCAAATCTGGAACTC 59 47268475 47268623 CATTGTAAGCCTTTGCATTCAC 59 NA Rattus norvegicus 81 Flad1 ENSRNOG00000020642 ENSRNOT00000028030 3 1 1 80 2 188728445 188728464 GGACCTACAGAAACATCTGG 58 188728297 188728402 GTGATGTGTACCCTCTGTC 57 NA Rattus norvegicus 81 AC127217.3 ENSRNOG00000051586 ENSRNOT00000088386 3 1 1 60 1 172464645 172464663 TATGTGATGCCCAAGTCCA 59 172464603 172464623 TGTAGAACACAGAAACCACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mocs2 ENSRNOG00000056325 ENSRNOT00000083668,ENSRNOT00000082990 3 2 2 80 2 46983765 46983784 CCAATCAGTGGAGGATAGTG 58 46983825 46987452 TCCACATCTTTCAAGGTATCC 58 NA Rattus norvegicus 81 Olr358 ENSRNOG00000059089 ENSRNOT00000091024 3 1 1 60 1 230079131 230079151 ATATACTTGCTGCCTAGCTCC 60 230079091 230079110 AGAACACAGATGCGATTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nt5e ENSRNOG00000011071 ENSRNOT00000015057 2 1 1 80 8 96007973 96008783 GAACAATGGTACCATCACCT 58 96008825 96008844 CCTTTCAATTGGACAAGGTC 57 NA Rattus norvegicus 81 Bmp3 ENSRNOG00000002381 ENSRNOT00000038872 1 1 1 80 14 12363240 12370206 TGCCAAAGTCTTTGAAGCC 59 12363178 12363196 CAGGAATCCCAGAGACGAC 60 NA Rattus norvegicus 81 Olr313 ENSRNOG00000029226 ENSRNOT00000043996 3 1 1 60 1 213426906 213426927 TCCAAGTCTAAGATTGTTCCTG 58 213426942 213426966 CATTAAAGCCATTGTATAGAGGGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000076558,ENSRNOT00000076986,ENSRNOT00000082549,ENSRNOT00000068553 2 4 6 80 17 84141186 84142924 AGCATTCAGCAAATCTAAGGAC 59 84141127 84141145 CATCTCGGAAGGAGACCTC 59 NA Rattus norvegicus 81 LOC102554591 ENSRNOG00000049452 ENSRNOT00000076558,ENSRNOT00000076986,ENSRNOT00000082549,ENSRNOT00000068553 3 4 6 80 17 84141181 84142919 TCAGCAAATCTAAGGACCTACC 60 84141122 84141140 GTCACCATCTCGGAAGGAG 60 NA Rattus norvegicus 81 Sh3bp2 ENSRNOG00000013747 ENSRNOT00000058111 1 1 1 80 14 81437913 81438235 GTGGAAAGGTTGTTCAAAGC 58 81437852 81437870 CTTGGTAGAGGAGTTCCGA 58 NA Rattus norvegicus 81 LOC685505 ENSRNOG00000032860 ENSRNOT00000047929 2 1 1 60 9 65933116 65933137 CAATGATTTCTATGAGGAGCAC 57 65933155 65933176 GCAATTCCAGTTAATGTCTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vsig10l ENSRNOG00000023411 ENSRNOT00000039446 1 1 1 83 1 98461416 98461434 ACCTCAGTGGAAACCTCAC 59 98459891 98461369 GCTGATGACTTGTTGAGCC 59 NA Rattus norvegicus 81 Cfap46 ENSRNOG00000027374 ENSRNOT00000029027,ENSRNOT00000074298 3 2 2 80 1 212003567 212003589 GAGTGTGAATTAGATGCTCTGAG 59 212002926 212003528 GATAATCAGCTGCTCCTCGA 60 NA Rattus norvegicus 81 Cyp7a1 ENSRNOG00000009488 ENSRNOT00000012819 2 1 1 80 5 19366461 19368333 TTGGAATAAGGAGAAGGAAAGC 59 19366402 19366420 CAAATTTCAGAGCACAGCC 58 NA Rattus norvegicus 81 AABR07014265.1 ENSRNOG00000042380 ENSRNOT00000065071 1 1 1 84 14 6299137 6299158 CATGTGACCAATGTTGTAAAGC 59 6299203 6299305 TCATAGGGCTTTCCTCCAG 59 NA Rattus norvegicus 81 Umod ENSRNOG00000015557 ENSRNOT00000021027 1 1 1 80 1 189194742 189194763 CTTTGAATGCTCTTACCCTCTG 59 189192883 189194703 CTGATGTTCAAGGCACTAACC 59 NA Rattus norvegicus 81 Msl3 ENSRNOG00000004016 ENSRNOT00000065814 2 1 1 80 X 27019899 27019922 ACTATAGAGATCCCTGAAGTTCTC 59 27019959 27020629 TTTCACTAACCGCTTTCTCCT 60 NA Rattus norvegicus 81 LOC102554121 ENSRNOG00000048837 ENSRNOT00000071358 1 1 1 80 9 105253133 105262328 CGTGCTCTTTGGTATCTGG 58 105253071 105253090 GATCAAAGCCAAGGACTCTG 59 NA Rattus norvegicus 81 AABR07072463.1 ENSRNOG00000021843 ENSRNOT00000032631 1 1 1 64 15 41800256 41800274 CAAAGCTACATGGCCAAGG 59 41800302 41800349 GCCTGGTTTAAACCTTGGG 59 NA DesignNoJunction Rattus norvegicus 81 Oosp2 ENSRNOG00000036624 ENSRNOT00000042091 3 1 1 80 1 227998713 228010780 GTTGTTCATCTCGGAAGTCAG 59 227998653 227998673 TCATAAAGTGACTCTCGGGTG 60 NA Rattus norvegicus 81 Zfp954 ENSRNOG00000022742 ENSRNOT00000042086 2 1 1 80 1 69856262 69856282 CTTGATGACTCTCAAAGGCTC 59 69856323 69857409 AAGTTCAAGTCTCAGGGAGG 59 NA Rattus norvegicus 81 Taar8a ENSRNOG00000030414 ENSRNOT00000044098 3 1 1 60 1 22403743 22403761 TGGTGGTGATTTCAGTCCT 59 22403701 22403719 GCGATGAGGAAATTGGCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lmcd1 ENSRNOG00000005690 ENSRNOT00000007523 3 1 1 81 4 144238934 144250818 AAGTGGAATATGTCTGTGAGCT 60 144250860 144250878 CTGTATCCAGCCCTGTCAG 60 NA Rattus norvegicus 81 Cyb561a3 ENSRNOG00000020702 ENSRNOT00000028094 1 1 1 80 1 226634144 226635814 TTCTGAAGGAGTTCTTGATCAG 58 226635855 226635873 ACATTGATCCCAGGGATCC 59 NA InUTR Rattus norvegicus 81 Kdelc1 ENSRNOG00000011740 ENSRNOT00000016285 2 1 1 80 9 50878148 50878166 AGAGTCCAGGGATATCGTG 58 50877966 50878105 ATATCCAGACTTACTCGGCC 59 NA Rattus norvegicus 81 Macrod1 ENSRNOG00000021174 ENSRNOT00000091465,ENSRNOT00000028749 1 2 2 88 1 222319577 222319595 GGACAAGCAGCTGAATGAG 59 222319647 222438073 AGTTGTTGGCAGCATTGAC 59 NA Rattus norvegicus 81 Abca13 ENSRNOG00000025645 ENSRNOT00000035612 1 1 1 80 14 89460256 89461034 GCAATTTGTTCAAGAAGTCCTC 59 89461075 89461093 AGTCTCCATCCTTCAGACC 58 NA Rattus norvegicus 81 Cts8 ENSRNOG00000040000 ENSRNOT00000061486 2 1 1 80 17 3389343 3389362 AACTATAGGGCCCATCTCTG 58 3389402 3396577 GGCTCATAATAAATGCCTCTCC 59 NA Rattus norvegicus 81 UST4r ENSRNOG00000049826 ENSRNOT00000077408,ENSRNOT00000050010 3 2 2 80 1 224368629 224378168 TTATACTCACAAGGTGGCTG 57 224368568 224368589 TTAGTTCCTTTAAGCCCTTCTG 58 NA Rattus norvegicus 81 AABR07016566.1 ENSRNOG00000051648 ENSRNOT00000088356 1 1 1 90 14 104396400 104396419 AATTTCAGCACCCACATGAC 59 104396472 104397893 TCTGTGTTGCTACAGAGGC 60 NA Rattus norvegicus 81 AABR07016566.1 ENSRNOG00000051648 ENSRNOT00000088356 2 1 1 91 14 104396401 104396419 ATTTCAGCACCCACATGAC 59 104396473 104397895 CATCTGTGTTGCTACAGAGG 58 NA Rattus norvegicus 81 Fam122a ENSRNOG00000051051 ENSRNOT00000076544 3 1 1 60 1 242373278 242373297 ATCGATTTCATTCCGGTGTC 59 242373237 242373255 AACACTGCTTCCCAATTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp777 ENSRNOG00000033639 ENSRNOT00000038517 3 1 1 93 4 77700175 77704263 CTGGTCTCTATGGACTATGCA 59 77700102 77700120 CAGAGTCCTCTTGCTCCTG 60 NA Rattus norvegicus 81 Gucy2e ENSRNOG00000015058 ENSRNOT00000020513 1 1 1 80 1 163414012 163414030 TGGCTGAAGAAGTTTGAGG 58 163414074 163416367 CATCTCCCGCATCTTTCTC 58 NA Rattus norvegicus 81 Ninj2 ENSRNOG00000010282 ENSRNOT00000013721 3 1 1 80 4 152631350 152731272 CATCCACCTTCAACACAGG 59 152731314 152731334 CTCTTCTTGGTGGCATAATGG 59 NA Rattus norvegicus 81 Gckr ENSRNOG00000048874 ENSRNOT00000073228,ENSRNOT00000076268 3 2 2 81 6 26356246 26357945 TGTTGCAGAGGTTCTCTGG 60 26356183 26356202 GACAGTGGTTGAGGAAAGTG 59 NA Rattus norvegicus 81 Zc2hc1b ENSRNOG00000042705 ENSRNOT00000066725,ENSRNOT00000081112 1 2 2 80 1 7314027 7316421 AGATGTTCTGGAAAGACATGGA 60 7313968 7313989 CTCTGCTTTAAGGAGTTGAAGG 59 NA Rattus norvegicus 81 Sema7a ENSRNOG00000007687 ENSRNOT00000010620 3 1 1 80 8 62741391 62743912 TTTACCTAACCACAGACAGGG 60 62743951 62743972 TGATGTTGAAGACAAAGCTGTG 60 NA Rattus norvegicus 81 Slc35e4 ENSRNOG00000004168 ENSRNOT00000080413 1 1 2 80 14 84164898 84165593 TCTCGGTCATAAACATGCTC 58 84164837 84164855 AAACTGGGCAAAGAAGTGG 59 NA Rattus norvegicus 81 Guca2b ENSRNOG00000008979 ENSRNOT00000012062 1 1 1 80 5 138696602 138697542 GTCTACATCAAGTACCATGGC 59 138696542 138696560 GGACATCTGCTTCTCTTCC 58 NA Rattus norvegicus 81 Sh2d1b ENSRNOG00000031599 ENSRNOT00000048692 3 1 1 95 13 88617068 88621061 CAGGATACAGACTGAGGCT 58 88621120 88621138 ACCACCAGTCCTTGATCTG 59 NA Rattus norvegicus 81 Pex5 ENSRNOG00000010407 ENSRNOT00000014028,ENSRNOT00000085675,ENSRNOT00000014030 1 3 3 80 4 156405134 156405459 TCTGTTGTCTGACTCCCTG 59 156405072 156405090 GGGTCAATGGATGTAGGGT 59 NA Rattus norvegicus 81 Olr1345 ENSRNOG00000047633 ENSRNOT00000049347 3 1 1 60 9 99680882 99680900 TCTTCCTCCTCTTCCTGCT 60 99680840 99680859 AGGATGATGGCTAGGTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr46 ENSRNOG00000031171 ENSRNOT00000000552 2 1 1 80 20 5454877 5454895 GAAGCACAGGAGGAAGAGG 60 5454688 5454833 TCCTACCAGAAACCCAGGT 60 NA Rattus norvegicus 81 Rn60_X_0609.1 ENSRNOG00000003115 ENSRNOT00000004152 1 1 1 60 X 60292191 60292210 GTGAGTTCAGGTGGTTATGG 58 60292150 60292169 TTGATGACGATCCCTTCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 F12 ENSRNOG00000015139 ENSRNOT00000066586,ENSRNOT00000081920 2 2 2 80 17 9737250 9739466 CTCTGTGGTTCTCACTGTG 58 9739509 9739528 TGGATGCATTTGTGGTACAG 59 NA Rattus norvegicus 81 Prl8a4 ENSRNOG00000016803 ENSRNOT00000022614 1 1 1 80 17 39601852 39603163 CCTCCCTTCTCTGGAACAC 59 39603206 39603225 ACATGCAGGAATTGATGCAG 59 NA Rattus norvegicus 81 Klk1c2 ENSRNOG00000029237 ENSRNOT00000025701 3 1 1 82 1 99983046 99983064 CAATGAATACCTCTGCGGG 58 99982110 99983003 CCTGGTAATTGTTGCTATAGCA 59 NA Rattus norvegicus 81 Saxo2 ENSRNOG00000026296 ENSRNOT00000029244 2 1 2 83 1 144601246 144601266 TTAAGCCCTAAGGAGAAGGAC 59 144596262 144601201 ATAATCTGACCCGCAGGTG 60 NA InUTR Rattus norvegicus 81 Dap3 ENSRNOG00000020373 ENSRNOT00000027608,ENSRNOT00000088327 2 2 2 81 2 188234193 188234211 CTCAGTCTCTGTCATGCTG 58 188232634 188234150 TTACCCAAAGATGAGCATCTG 58 NA Rattus norvegicus 81 AABR07016166.1 ENSRNOG00000050592 ENSRNOT00000070839 3 1 1 83 14 94776661 94776679 TGACAGCGACATCTTAACG 58 94776726 94776981 AGTACACGAAAGGCTTTGC 59 NA Rattus norvegicus 81 Prl7a3 ENSRNOG00000016616 ENSRNOT00000022381 2 1 1 80 17 39034652 39034672 TGTTTGATACTGCCACAAGAC 59 39034712 39035449 CTTCGTTGACTGCATACATCC 60 NA Rattus norvegicus 81 Dusp12 ENSRNOG00000003100 ENSRNOT00000004179 1 1 1 80 13 89263821 89263839 GACCCAACTACCGTTTCAC 59 89263493 89263780 ACGTCTAAATAAAGATCGCCTG 59 NA Rattus norvegicus 81 Cnksr2 ENSRNOG00000007014 ENSRNOT00000080512,ENSRNOT00000009802 2 2 2 80 X 39885420 39885439 GCAAATGGATGCATTGAGAC 58 39885480 39907538 GAGGACTGCTGAAATGTATGG 59 NA Rattus norvegicus 81 Adgrb1 ENSRNOG00000029450 ENSRNOT00000076800,ENSRNOT00000015578 2 2 5 80 7 115780730 115780899 CATCCAGATGATGACCCGA 59 115780942 115780961 GTCTGGATGACCTCTGAGAC 59 NA Rattus norvegicus 81 Ubqln3 ENSRNOG00000023833 ENSRNOT00000032587 3 1 1 110 1 169333743 169334041 CACAGCAGATTGCTGTGTC 60 169333651 169333669 AGCTGGGAATCCTGTACTG 59 NA InUTR Rattus norvegicus 81 Zfp28 ENSRNOG00000042777 ENSRNOT00000020523 3 1 1 80 1 71169037 71169651 CAACTTGTTCTCAGGCCAG 59 71168975 71168993 GTTACCCTTCCAGCATGTG 59 NA Rattus norvegicus 81 Olr465 ENSRNOG00000058567 ENSRNOT00000084229 2 1 1 60 3 73254811 73254831 AGAAGACCATCTCCTATGCTG 59 73254852 73254871 ATCACCAGAGCAATGAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Elavl3 ENSRNOG00000013752 ENSRNOT00000018416 1 1 1 80 8 23048207 23048434 GGATAAGATCACAGGACAGAG 57 23048147 23048165 GTGTTGATGGCTTTGTCTG 57 NA Rattus norvegicus 81 Atg3 ENSRNOG00000002094 ENSRNOT00000002906 1 1 1 80 11 60601487 60601507 TAGACACGTACCATAACACAG 57 60594464 60597653 TTATACTGTCCTTGCTTTCCAG 58 NA Rattus norvegicus 81 Olr1228 ENSRNOG00000048344 ENSRNOT00000072062 2 1 1 60 8 42018250 42018269 TCTTCTATGGATCTGGGCTC 58 42018292 42018310 TGACCTACAGTCTCAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir493 ENSRNOG00000036243 ENSRNOT00000054366 1 1 1 60 6 133699517 133699535 GGGCCTTGTACATGGTAGG 60 133699559 133699577 ACACAGTAGACCTTCACCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565415 ENSRNOG00000033274 ENSRNOT00000041621 2 1 1 60 4 80313209 80313228 CACTTGAAGAGGAACCAGAG 58 80313168 80313189 CCAACGTCCATAATTTATCCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563941 ENSRNOG00000005918 ENSRNOT00000007754 2 1 1 62 8 52829275 52829293 AAGGAGATCTCAACCCGTC 59 52829319 52829337 TAACCAGGAAGCTGTCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1323 ENSRNOG00000053357 ENSRNOT00000079430 3 1 1 60 8 43676165 43676186 CCAATCGACTGTCATTATTCCC 59 43676206 43676225 GATGATGTTCTTCACTGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddb1 ENSRNOG00000020715 ENSRNOT00000028188 2 1 1 80 1 226671568 226671587 GAATTGATGGGCTTTGTGGA 59 226671628 226673758 TGAGGTGATCTGGATAAGCTG 59 NA Rattus norvegicus 81 Nhlh1 ENSRNOG00000005166 ENSRNOT00000006862 2 1 1 195 13 90440088 90442856 GAGTCCTTCTAGGCTCCAG 59 90439911 90439929 GAGTTGAGCATCATGGTGG 59 NA InUTR Rattus norvegicus 81 Capn12 ENSRNOG00000020389 ENSRNOT00000027645 1 1 1 110 1 87067409 87067647 TTTCCACTTTCAGCTCTGG 58 87067721 87067739 TCGTTCCTTTGTTCTGAGC 58 NA Rattus norvegicus 81 Fam8a1 ENSRNOG00000026120 ENSRNOT00000060500,ENSRNOT00000036560 1 2 2 80 17 18415769 18417038 GTTAGCATCACAACGTCCA 58 18415707 18415726 CAATGTGATGAAAGCAGGGA 59 NA Rattus norvegicus 81 Mrpl17 ENSRNOG00000019497 ENSRNOT00000050562 3 1 1 80 1 170653439 170653458 CTCATCGACTATGGAAAGCT 57 170653130 170653396 CAAGTCCTTCTCAGTGAGC 58 NA Rattus norvegicus 81 Jade2 ENSRNOG00000004956 ENSRNOT00000082585,ENSRNOT00000043343 2 2 2 81 10 37285803 37286422 GGAGATGGAGAAACCCGAG 60 37285740 37285759 CATATTCTGGTGGCACAACG 60 NA Rattus norvegicus 81 Dydc1 ENSRNOG00000011165 ENSRNOT00000014862 1 1 1 80 16 18653708 18653731 CTGGATCCCATTGAATATTTAGCC 60 18653767 18654229 TTCTTTCTGTCTCAATTGCTCC 59 NA Rattus norvegicus 81 Tmem45al ENSRNOG00000042975 ENSRNOT00000002233 3 1 1 83 11 46080290 46080311 TTACTACTAATGCACTTCCGCT 60 46080349 46081309 GGTTGTAGAAGATAAATGTCTCCAC 60 NA Rattus norvegicus 81 Tmem100 ENSRNOG00000002434 ENSRNOT00000003297 1 1 1 80 10 77537347 77540251 GCTGAGAAAGAGGCAATCC 59 77540295 77540313 TCTCGTTCAACTTCTGGGA 58 NA InUTR Rattus norvegicus 81 Tff2 ENSRNOG00000001162 ENSRNOT00000001537 2 1 1 90 20 9875296 9875909 AGAAACCTTCTCCCTGTCG 59 9875224 9875243 TTAAAGCACTGGTCACTGGT 60 NA Rattus norvegicus 81 Spata24 ENSRNOG00000019976 ENSRNOT00000040091 3 1 1 80 18 28452832 28452941 TTTGAGAAAGCGCTCTCCA 60 28452770 28452788 ATTGCACTTGGTGATGAGC 59 NA Rattus norvegicus 81 Osbp ENSRNOG00000021057 ENSRNOT00000065411 1 1 1 80 1 228420543 228420562 CACAAGACAGGAGACAAGTG 59 228420605 228421792 ACCTGTCACCTTTCTTGCT 59 NA Rattus norvegicus 81 Zfp42l ENSRNOG00000033956 ENSRNOT00000040592 1 1 1 97 4 157057952 157057971 TTGGAGTACATGACAAAGGG 58 157058031 157058130 GTAAAGCCTGACAGCTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Rbks ENSRNOG00000004710 ENSRNOT00000006452 3 1 1 83 6 26096558 26098866 AGAGTGAGGCTGAGATCCT 59 26098913 26098931 CCCGTTCTAGGAGAACCAG 59 NA Rattus norvegicus 81 Yipf5 ENSRNOG00000014564 ENSRNOT00000020385,ENSRNOT00000040877 3 2 2 83 18 33413701 33413720 CCAGACAAGTTACAGCATCG 59 33407636 33413655 GCATACTGCTTGCTGTAGG 59 NA Rattus norvegicus 81 Ube2j1 ENSRNOG00000007434 ENSRNOT00000076508,ENSRNOT00000041271 2 2 3 60 5 48290119 48290137 AGAATACCTCCATGAGCCC 59 48290160 48290179 GACGACCTTCTCTGACTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076535 1 1 7 166 1 215609112 215609742 AGAATCTAGGCTCAGAGCT 57 215609871 215609890 AGTAGCCTTGAAACTTAGGG 57 NA Rattus norvegicus 81 Crb3 ENSRNOG00000047322 ENSRNOT00000080856,ENSRNOT00000071780 3 2 2 137 9 9984376 9985197 GCCAAGAAACACCAGACTC 59 9983267 9983285 CTGCTATGAGGAGGGTTCC 59 NA Rattus norvegicus 81 Ppp1r3e ENSRNOG00000014904 ENSRNOT00000019992 3 1 1 133 15 33536975 33536993 ATGATCGGACATAGAGCCG 59 33536860 33536879 CTATAAAGCTCAGGTTGCGG 59 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Ptk2b ENSRNOG00000027839 ENSRNOT00000030007,ENSRNOT00000030036 2 2 2 80 15 42860326 42860344 CTACATGCAACGCTATGCC 60 42851662 42860284 TTGAAGAATCTCCTGAGCTCC 60 NA Rattus norvegicus 81 Mir3068 ENSRNOG00000035409 ENSRNOT00000053532 1 1 1 60 6 111468776 111468797 GGAGTTCATGCAAGTTCTAACC 60 111468737 111468757 TGTTGGAGTACTGCAATTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307235 ENSRNOG00000015508 ENSRNOT00000020892 2 1 1 80 13 25687525 25689876 AGCCCAATAGGAAATTGTCAC 59 25689917 25689936 ATCCTAACCGACTATCTGCT 58 NA Rattus norvegicus 81 Prdm13 ENSRNOG00000007683 ENSRNOT00000010126 3 1 1 80 5 35829452 35829765 AGGAGGACAGATCTTCTATCG 58 35829392 35829412 GCCAAGGAGTTAGAATACCAC 59 NA Rattus norvegicus 81 Mtch1 ENSRNOG00000000527 ENSRNOT00000000635 1 1 1 80 20 6938344 6938529 TAAACAACTGTGGACTGCA 57 6938282 6938300 TCAAGTACTTCCAGCAGTG 57 NA Rattus norvegicus 81 Ccl1 ENSRNOG00000021851 ENSRNOT00000031360 3 1 1 80 10 69535231 69536627 ACTACCCAGCTGTAATATTCAG 58 69535172 69535190 GGTAATCTTGAACCCACGT 58 NA Rattus norvegicus 81 AABR07072539.2 ENSRNOG00000048350 ENSRNOT00000073070 1 1 1 80 17 15194472 15196201 CAATGGAGCACACTATTCCC 59 15196241 15196262 TTTCATAGGTTGTGATGGAGTC 58 NA Rattus norvegicus 81 St3gal6 ENSRNOG00000001653 ENSRNOT00000002255 1 1 1 80 11 44233011 44234197 ATTTCCCAAAGATCAGAAACCC 59 44234235 44234256 ACTTCACTGCATATGTGAAACG 60 NA Rattus norvegicus 81 Tchhl1 ENSRNOG00000009610 ENSRNOT00000038311 1 1 1 80 2 193807352 193807370 CAAGGAAGCAATGCTGACC 60 193807414 193807910 AAGACATGTGGCTGAAGGA 59 NA Rattus norvegicus 81 Tapbpl ENSRNOG00000027552 ENSRNOT00000038178 1 1 1 80 4 157736221 157737662 CAAACACAGAGCAAAGAGGAG 60 157736161 157736179 GAAGTCCCAGGAGCAAGAG 60 NA Rattus norvegicus 81 Fam3d ENSRNOG00000007320 ENSRNOT00000009650,ENSRNOT00000085822 1 2 2 83 15 18349560 18351255 ACATGTACTCTGGAGAACCC 59 18351301 18351319 CATAGGAGGCTACCAGCAC 60 NA Rattus norvegicus 81 Slc2a1 ENSRNOG00000007284 ENSRNOT00000064452,ENSRNOT00000083700 1 2 2 80 5 138181522 138181816 TTCCAATATGTGGAGCAACTG 59 138181855 138181876 GGTGAAGATGAAGAAGAGTACC 58 NA Rattus norvegicus 81 Sec13 ENSRNOG00000010628 ENSRNOT00000014377 3 1 1 81 4 145693411 145693826 ATGACTCCTCAGTGAACTCTG 59 145693350 145693368 ATGGCACCATCTGAACTCC 60 NA Rattus norvegicus 81 Zfp771 ENSRNOG00000043225 ENSRNOT00000023999 2 1 1 103 1 198690833 198690851 GAGATGCAGGAGGAGATGG 59 198690918 198700158 ACCTCCTTGTTGTCCACAG 60 NA DesignNoJunction Rattus norvegicus 81 Dpysl2 ENSRNOG00000009625 ENSRNOT00000012996 3 1 1 80 15 43537072 43539478 TGGGTTGATCAAGCAAATAGG 59 43537012 43537030 ATCACCATTCTGGAGTGGG 59 NA Rattus norvegicus 81 LOC363337 ENSRNOG00000042971 ENSRNOT00000041051 2 1 1 80 19 27861032 27861515 ATCCATGAAGAACAGGCCA 59 27860970 27860989 ATTGACATGACTGCCTCCTC 60 NA Rattus norvegicus 81 Agtr1a ENSRNOG00000018346 ENSRNOT00000038532 3 1 1 81 17 35909070 35948526 TGATCACCAGGTCAAGTGG 59 35909007 35909025 GCAGAAGAGTTAAGGGCCA 60 NA InUTR Rattus norvegicus 81 AABR07038349.1 ENSRNOG00000038383 ENSRNOT00000058456 3 1 1 80 X 46628503 46629812 TTCATTGTATTGCTCTGGAGAC 59 46628444 46628463 TCACATCCAAACAAACAGGT 58 NA Rattus norvegicus 81 Sucnr1 ENSRNOG00000014039 ENSRNOT00000018767 1 1 1 60 2 150212554 150212572 GCTATCGCTGAACAAACCT 58 150212594 150212614 GAGTACAGAGAAGATCACCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kctd9 ENSRNOG00000012951 ENSRNOT00000017566 3 1 1 80 15 44426497 44426703 TTCAAGGACAAAGGTGTCTG 58 44426744 44426764 TTCAAAGTACTCAGGACTTCG 58 NA Rattus norvegicus 81 Mllt1 ENSRNOG00000048736 ENSRNOT00000071211 2 1 1 81 9 10151251 10151270 GGGTCAGATGAGGATGACTC 59 10151314 10152804 TGAAGCTTAGCCTGGACTC 59 NA Rattus norvegicus 81 Farsa ENSRNOG00000003149 ENSRNOT00000004370 2 1 1 80 19 25976983 25977001 GCTCCCAATGGACTATGTC 58 25977042 25977153 CAGGTATACTTGTAGCCTTGTG 59 NA Rattus norvegicus 81 Brcc3 ENSRNOG00000048061 ENSRNOT00000071068 2 1 1 60 9 9865799 9865817 GAAAGAGGAGGTGATGGGT 59 9865757 9865775 GGACTCACTCCTTACGTCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1405 ENSRNOG00000047313 ENSRNOT00000044464 3 1 1 62 10 36478555 36478573 CTACAGCCTGAGGAACCAG 60 36478593 36479037 AGGTAGGATCTGAGAATTATCTTCC 60 NA DesignNoJunction Rattus norvegicus 81 Brd9 ENSRNOG00000015676 ENSRNOT00000021000 1 1 1 80 1 31967181 31967735 GTCGTACGAAGATTATACAGACAC 59 31967124 31967143 TCTGTCACTTCACTTCCTCC 59 NA Rattus norvegicus 81 Cdc42ep3 ENSRNOG00000032136 ENSRNOT00000048711 2 1 1 98 6 1924172 1942759 GAGACAGCTGGTTTCTCCT 59 1924092 1924110 AGGAGACAGGGTCTGAGAG 60 NA InUTR Rattus norvegicus 81 Primpol ENSRNOG00000022320 ENSRNOT00000029868 3 1 1 85 16 48875454 48880579 GCTTGTACAGCATGTCTGTG 60 48880627 48880645 TGCTGGAATCCAGGTTGAG 60 NA Rattus norvegicus 81 Mgmt ENSRNOG00000016038 ENSRNOT00000021537 1 1 1 80 1 209423625 209456920 CCAGCAAGATTCATTCACCA 59 209456960 209456981 TGCTGGTAAGAAACCATTTCTC 59 NA Rattus norvegicus 81 Mgmt ENSRNOG00000016038 ENSRNOT00000021537 3 1 1 80 1 209423622 209456918 GTTCCAGCAAGATTCATTCAC 58 209456958 209456978 TGGTAAGAAACCATTTCTCCG 58 NA Rattus norvegicus 81 Rfx7 ENSRNOG00000060367 ENSRNOT00000086841 2 1 1 84 8 79268286 79271510 CACCAGCAGGACTTAAAGG 58 79271555 79271576 GTCTTTACTTGAGGTTGAAAGG 57 NA Rattus norvegicus 81 Olr456 ENSRNOG00000061609 ENSRNOT00000092148 1 1 1 60 3 73138668 73138689 ATCTGGGTGGTTTCATTAACTC 59 73138708 73138728 CAGAAAGTCAAGGCAAATGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcnp ENSRNOG00000028411 ENSRNOT00000039997 3 1 1 80 11 47061734 47061754 TTGGATTTGCCATAGGTAGTC 58 47061794 47064059 TTTCCTTAGGCTTACTTGCTC 58 NA Rattus norvegicus 81 Nxpe3 ENSRNOG00000001608 ENSRNOT00000002188,ENSRNOT00000079598 3 2 2 80 11 47224713 47224733 ATCAAGATGCCAATCAACTCC 59 47224774 47232864 TTCTGGGTCATCAGTTTCCT 59 NA Rattus norvegicus 81 Tnip1 ENSRNOG00000010370 ENSRNOT00000013864,ENSRNOT00000086456 2 2 2 80 10 40259737 40259755 AAGGAGGAGCTGAAGAAGC 59 40259214 40259695 CTCTTTGAGTGTTCTGAGCTG 59 NA Rattus norvegicus 81 Dab2 ENSRNOG00000028930 ENSRNOT00000050655 3 1 1 80 2 55766231 55766728 AGATTAATGAACCACCAAAGCC 59 55766767 55766787 GGTTCTCGAGTGAATTGTCAG 59 NA Rattus norvegicus 81 AABR07035089.1 ENSRNOG00000047146 ENSRNOT00000042410 2 1 1 89 12 4267980 4267998 CCCTTATGGTCCACTTGGT 59 4268050 4297606 CATACAGACCTGGGAGTCTC 59 NA Rattus norvegicus 81 Tbl1x ENSRNOG00000003686 ENSRNOT00000079680,ENSRNOT00000004901 1 2 2 80 X 44976227 44979110 CTTCCAAGGACATACTAATGAGG 59 44979150 44979168 ATGTCATCAGAGCAGGAGG 59 NA Rattus norvegicus 81 Vwa5a ENSRNOG00000000195 ENSRNOT00000015986 2 1 1 80 8 42464875 42465362 ATCATGCAGGCTCTTCTATCC 60 42465402 42465422 CAAAGACAGCAGGATTCACAG 60 NA Rattus norvegicus 81 Vwa5a ENSRNOG00000000195 ENSRNOT00000015986 3 1 1 80 8 42461964 42462078 TTCCATATGGACATGAAAGCAC 59 42462119 42462137 AAGAATCTGCCACTCCCTG 59 NA Rattus norvegicus 81 Ewsr1 ENSRNOG00000009437 ENSRNOT00000083464,ENSRNOT00000012634 1 2 2 80 14 85325324 85329495 GGTTGTCAAGATGAACAAGAG 57 85325264 85325282 TCACCTTTAGGCTTTCCTG 57 NA Rattus norvegicus 81 Rhag ENSRNOG00000050121 ENSRNOT00000072144 2 1 1 80 9 23469447 23470731 GGGAAGTCTACAGTGTCCA 58 23469385 23469404 CAAACCTCCAACAATTGCTG 58 NA Rattus norvegicus 81 Spib ENSRNOG00000019660 ENSRNOT00000026599 2 1 1 81 1 100535263 100536576 CACACTTAAGCTGTTTGTACC 58 100535202 100535222 CCATCTGAATCTGGGTAACTG 58 NA Rattus norvegicus 81 S100a4 ENSRNOG00000011821 ENSRNOT00000015958 3 1 1 83 2 189998569 189998590 ACAAGTTCAAGCTGAACAAGAC 60 189998634 189999309 CTTCGTCTGTCCTTCTCCC 60 NA Rattus norvegicus 81 Ifit1 ENSRNOG00000019050 ENSRNOT00000025770 1 1 1 60 1 252944724 252944745 CACCTTAAAGTTCTCCTTGCTC 59 252944764 252944784 TTTCTGCTTCATCTTGTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 S100a5 ENSRNOG00000011748 ENSRNOT00000015712 1 1 1 80 2 190004031 190005613 CTTGCAGAGAAGATGAAGGA 57 190005656 190005674 GAAGTCAATCTCCTGGTCG 58 NA Rattus norvegicus 81 Wdr95 ENSRNOG00000000904 ENSRNOT00000061252,ENSRNOT00000001203 1 2 2 80 12 6292044 6292065 TAGTTTGGAATGTCATCTCAGG 58 6292103 6296532 CTTCTCTTTCTTCTCTAGGGTC 58 NA Rattus norvegicus 81 RGD1561333 ENSRNOG00000031381 ENSRNOT00000048691 1 1 1 60 1 273563858 273563877 AACCCAGAGACCAAGAAGAC 59 273563899 273563918 AGGAAATGACCTTCTTGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561333 ENSRNOG00000031381 ENSRNOT00000048691 2 1 1 60 1 273563859 273563877 ACCCAGAGACCAAGAAGAC 59 273563899 273563919 GAGGAAATGACCTTCTTGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pkm ENSRNOG00000011329 ENSRNOT00000015332,ENSRNOT00000083666 3 2 2 80 8 64490642 64493317 CATGGAACCCATGAGTACC 58 64493361 64493379 GAGAATGGGATCAGATGCA 57 NA Rattus norvegicus 81 Mxi1 ENSRNOG00000034078 ENSRNOT00000042822 3 1 1 81 1 274087213 274087231 AGCGGATACGAATGGACAG 60 274087273 274088382 ACATCCACTTCAATCTCCTCTC 60 NA Rattus norvegicus 81 LOC685160 ENSRNOG00000032131 ENSRNOT00000049860 2 1 1 80 19 29013792 29013813 AACTTAGAGATGGAGAACACTG 58 29013091 29013752 GTGCAGATTGCTAGAGAAGG 59 NA Rattus norvegicus 81 Emb ENSRNOG00000060329 ENSRNOT00000079907 1 1 1 80 2 49693369 49693390 GAGGAAATGATGGCTAAGTACG 59 49693427 49710776 TTCTGATACTCTGGTCTGTTCTG 60 NA Rattus norvegicus 81 LOC100910939 ENSRNOG00000047286 ENSRNOT00000072353 3 1 1 60 8 42046479 42046499 CTTGTTTGTCCTGTTCTTGGT 59 42046521 42046539 CATCAGAGTCAGGTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rapgef6 ENSRNOG00000009995 ENSRNOT00000013481 3 1 1 80 10 40027211 40027232 GATACTATTTCTGTAGCGTCCT 57 40027273 40033262 GAGTGTACAACCTTTGCGA 58 NA Rattus norvegicus 81 Ccnl1 ENSRNOG00000011586 ENSRNOT00000016016,ENSRNOT00000015763 1 2 2 96 2 157758562 157759156 AGTTTCGAGATTGTTGCCA 58 157758484 157758505 GGTGGTGGAATACATTAATCAC 57 NA Rattus norvegicus 81 Ccnl1 ENSRNOG00000011586 ENSRNOT00000016016,ENSRNOT00000015763 3 2 2 99 2 157758562 157759157 CAGTTTCGAGATTGTTGCCA 59 157758482 157758505 GAGGTGGTGGAATACATTAATCAC 60 NA Rattus norvegicus 81 Arhgef7 ENSRNOG00000012934 ENSRNOT00000043449,ENSRNOT00000017947 1 2 2 80 16 83032497 83032517 GGGATGACATAAAGACGTTGG 59 83030169 83032456 CATTCTTCTCCTCGCTTCCT 60 NA Rattus norvegicus 81 Map2k6 ENSRNOG00000004437 ENSRNOT00000006217 1 1 1 80 10 98797065 98801593 TATCCATCGAGATGTCAAGCC 60 98801635 98801653 CCGCTGATTCCAAAGTCAC 59 NA Rattus norvegicus 81 Tmtc2 ENSRNOG00000004585 ENSRNOT00000006086 1 1 1 80 7 47312911 47312931 AATCATTGAGATCCAAGACGG 58 47276289 47312870 CACTCTTACGACCTGTTAGC 58 NA Rattus norvegicus 81 Loxl4 ENSRNOG00000015727 ENSRNOT00000021144 1 1 1 86 1 261843192 261844031 GCTATCAAGGACACCTGGT 59 261843124 261843142 CATTTCTGTGCCTGAGCAG 59 NA Rattus norvegicus 81 Trub2 ENSRNOG00000043189 ENSRNOT00000064638 1 1 1 80 3 8348651 8348669 CGCTGTCTATAAACCTCCG 58 8347701 8348608 GCATTGAGACCTTTAAGCAG 57 NA Rattus norvegicus 81 Eef1a2 ENSRNOG00000012477 ENSRNOT00000016947 2 1 1 80 3 176659367 176660460 TACAAGATTGGTGGCATTGG 59 176659306 176659324 AAAGGTCACCACCATACCA 59 NA Rattus norvegicus 81 Rab3d ENSRNOG00000011582 ENSRNOT00000015609 3 1 1 153 8 22926884 22926902 GATCAAGCTGCAGATCTGG 58 22926201 22926310 TTTAATCTGCGTAGCCCAG 58 NA Rattus norvegicus 81 Lce1l ENSRNOG00000042105 ENSRNOT00000065884 2 1 1 101 2 193165028 193165697 GCTGAACAGATTTACAGACTTCC 60 193164949 193164967 TTAGGAGTCTGGCACTTGG 59 NA InUTR Rattus norvegicus 81 Sh3gl2 ENSRNOG00000006761 ENSRNOT00000008999 3 1 1 80 5 103615247 103615266 AAAGTGAGTGAGAAGGTGGG 60 103615308 103623351 AACATCCACTTTCCTCTCCA 59 NA Rattus norvegicus 81 Tryx5 ENSRNOG00000028989 ENSRNOT00000048779 2 1 1 84 4 69157250 69157682 CAACTAAGGAAGTCTCAGCTG 59 69157186 69157205 TTGGTTATACCTGCTTTCCC 58 NA Rattus norvegicus 81 Cntnap5c ENSRNOG00000043185 ENSRNOT00000067198 1 1 1 80 13 7531294 7534820 TGTGCATTCTTCATTAGATCCC 59 7534861 7534879 ACTGCTGAGTCACTTTGGA 59 NA Rattus norvegicus 81 Ctsb ENSRNOG00000010331 ENSRNOT00000014177 1 1 1 82 15 46330956 46331696 CTCTTGTTGGGCATTTGGG 59 46331742 46331760 ACACCTCCACATTGACTCG 60 NA Rattus norvegicus 81 Olr1743 ENSRNOG00000000765 ENSRNOT00000000992 1 1 1 60 20 1845323 1845341 CTCTCCAAGATCATTGCCC 58 1845281 1845301 AGATGACAGGGTTAAAGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Parp6 ENSRNOG00000011199 ENSRNOT00000058339 1 1 1 80 8 64454851 64454871 CGACGTTGAATGAGTACTGTG 59 64454913 64455540 TACAGACAGCTGGCTTGAG 59 NA Rattus norvegicus 81 Parp6 ENSRNOG00000011199 ENSRNOT00000058339 2 1 1 80 8 64447421 64447441 CTCCGAACAGAACCTATTGTG 59 64447482 64448059 AACCTCGATTGATGGTTCTG 58 NA Rattus norvegicus 81 Prodh2 ENSRNOG00000057578 ENSRNOT00000083550,ENSRNOT00000091101 3 2 2 90 1 88961383 88961486 TATCTGAAGGACACTCACGA 58 88961539 88961557 CACCTCTCACCAACTTCAC 58 NA Rattus norvegicus 81 Hist1h2bg ENSRNOG00000021198 ENSRNOT00000028779 3 1 1 154 17 43688960 43688978 CATTACAACAAGCGCTCGA 59 43680386 43688842 GTCTACTCCTCTTGGCACG 60 NA InUTR Rattus norvegicus 81 Phip ENSRNOG00000008652 ENSRNOT00000011864 3 1 1 80 8 90422432 90423962 GCAGTTCCAGTGACTACTC 58 90422370 90422388 GAACTTTCTTTGGTGGCTG 57 NA Rattus norvegicus 81 AABR07018556.1 ENSRNOG00000049650 ENSRNOT00000045865 3 1 1 60 15 64939917 64939935 AACACATGGAAACAACCCT 58 64939957 64939977 GTATCTACAGCTCCTTGTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ints4 ENSRNOG00000012552 ENSRNOT00000016770 1 1 1 80 1 162447798 162451872 ACTAAAGTGGTTCAGCAACAG 59 162451913 162451932 GAGAGCAGCAGATTTACTCG 59 NA Rattus norvegicus 81 Rasl11a ENSRNOG00000000956 ENSRNOT00000087449,ENSRNOT00000001264 1 2 2 91 12 9988107 9988424 CAAGAGCGCAATGATTGTG 58 9987917 9987938 CATAGACGAGTCTCGAATACAG 58 NA Rattus norvegicus 81 Snx18 ENSRNOG00000010971 ENSRNOT00000066764 1 1 1 80 2 45479088 45479106 CATGGACCTGTTAGCACTG 58 45457403 45479045 TTGGTAAGAGCTCCTTTCTG 57 NA Rattus norvegicus 81 Kctd11 ENSRNOG00000015669 ENSRNOT00000020970 3 1 1 60 10 56490830 56490849 CACATCCTCAATTTCCTGCG 60 56490789 56490807 CAGTTTCTCCATACCCACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr459 ENSRNOG00000030662 ENSRNOT00000043965 1 1 1 60 3 73177827 73177846 TGACCTTGTATTATGGCTCC 57 73177786 73177806 AAAGAATAACTGGTACGAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr459 ENSRNOG00000030662 ENSRNOT00000043965 3 1 1 60 3 73178533 73178553 CATTCTGTTGGGATTCACCTC 59 73178493 73178513 GAGAAACATCACAAACAGGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gab1 ENSRNOG00000017879 ENSRNOT00000083219,ENSRNOT00000024390 1 2 2 80 19 30894736 30897989 GTCCAACGAAGATCAGAATCTC 59 30898028 30898048 TTATCTCCTTTGGGTTTGGTC 58 NA Rattus norvegicus 81 LOC100910553 ENSRNOG00000049652 ENSRNOT00000074265 1 1 1 60 15 35534768 35534787 CCAAGGGAAAGTGTCATCTG 59 35534809 35534828 GATCAAAGGATTCAGCATGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC690806 ENSRNOG00000043288 ENSRNOT00000067898 2 1 1 60 17 21339198 21339217 AAATTCAAGTTTCTGCGGGA 58 21339157 21339176 GCTCATTATCTCCTTCCTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam173a ENSRNOG00000019684 ENSRNOT00000026641 2 1 1 196 10 15160507 15160900 AAGATCTCTGGAAGGTGAGC 59 15160176 15160194 ATAGGCCCAAACTCTGTCG 60 NA Rattus norvegicus 81 Bre ENSRNOG00000004364 ENSRNOT00000005855 1 1 1 80 6 25838388 25903946 ACCTTCTCAAGGATGTAAACGA 60 25838329 25838347 GGGTGGCTTCAGTATCCTC 60 NA Rattus norvegicus 81 Abcb1a ENSRNOG00000008012 ENSRNOT00000043822 2 1 5 80 4 22145953 22145973 GACTGTTGTATCCTTGACCCA 60 22144703 22145913 ACTGAATTCCTGTAAGGTCCG 60 NA Rattus norvegicus 81 Plac8l1 ENSRNOG00000018820 ENSRNOT00000025453 3 1 1 90 18 36502515 36513063 AATCTCCGACTTGAGGAGC 59 36502443 36502462 AATAGCTGTGACTGTGGTCC 60 NA Rattus norvegicus 81 Kcnj11 ENSRNOG00000021128 ENSRNOT00000028685 2 1 1 60 1 102105000 102105020 TAGAAACCACAGGCATTACCA 60 102104960 102104978 CACAGAATCTCGTCAGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cers6 ENSRNOG00000024595 ENSRNOT00000058763 2 1 1 80 3 55294527 55294547 CTCCTGTTTGTCATGTTTGCT 60 55294586 55334163 TAATGTGGTATTCAACACCCAG 59 NA Rattus norvegicus 81 LOC100911479 ENSRNOG00000046634 ENSRNOT00000072854 1 1 1 60 10 44934140 44934161 TGAAGACACATCCCAATATGAG 58 44934182 44934200 TATCAGCACAAGGACAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccnc ENSRNOG00000007719 ENSRNOT00000011442 1 1 1 80 5 35869439 35869642 GAGATTCTATGCCAGGTATTCTC 58 35869681 35869700 ACTTTGGATGCCAGAAACAC 59 NA Rattus norvegicus 81 Ccnc ENSRNOG00000007719 ENSRNOT00000011442 3 1 1 80 5 35876550 35879502 CATGATAGCTTTAGCTTGCCT 59 35879543 35879562 ACAGAAAGTTCTGCAAACCA 58 NA Rattus norvegicus 81 Rai14 ENSRNOG00000028872 ENSRNOT00000046215,ENSRNOT00000040348 1 2 2 80 2 60602335 60657647 TTTAGGAAGAGCGACACGA 59 60602273 60602293 CTTCTCAGCATCTCCATTCTC 58 NA Rattus norvegicus 81 Socs1 ENSRNOG00000002568 ENSRNOT00000003458 2 1 1 224 10 4957792 4957810 CATTCGTGTGCACTTCCAG 60 4957998 4958016 AGTACCGGGTTAAGAGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066440.1 ENSRNOG00000045945 ENSRNOT00000051043 3 1 1 60 9 8899040 8899058 CCACAGACTTAGGACCCAG 59 8898998 8899019 GACAGATATGACAAGATCCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nop58 ENSRNOG00000016486 ENSRNOT00000022676,ENSRNOT00000091283 2 2 2 80 9 66510826 66511915 TTACAGAAAGTTGGAGACAGG 58 66511955 66511975 CACTTCAGCTTCTACTTCCTC 58 NA Rattus norvegicus 81 LOC499276 ENSRNOG00000022900 ENSRNOT00000031258 2 1 1 92 1 201700927 201702530 GAAATTCTACAACTCGGTGGC 60 201700855 201700873 GAGTTCCCTCAGCATCCTC 60 NA Rattus norvegicus 81 Trpm2 ENSRNOG00000001216 ENSRNOT00000001631 3 1 1 80 20 11463302 11463320 GCCTCATGCACATCTTCAC 59 11463362 11463813 AGAAGACGTCCTTCATCATCC 60 NA Rattus norvegicus 81 Npr3 ENSRNOG00000019184 ENSRNOT00000025966 2 1 1 80 2 61924908 61936589 TTCTTCTTACGGAGATGGCT 59 61924847 61924866 GTTTGGAGGGATGAGTAAGC 58 NA Rattus norvegicus 81 AC093965.1 ENSRNOG00000032531 ENSRNOT00000019871 2 1 1 77 10 40323224 40323242 ACTTTAAGGCTTTCGCCAG 59 40323286 40323304 CTTCTTTCGCCCTCTTTGC 60 NA DesignNoJunction Rattus norvegicus 81 AC093965.1 ENSRNOG00000032531 ENSRNOT00000019871 3 1 1 78 10 40323223 40323241 AACTTTAAGGCTTTCGCCA 58 40323286 40323304 CTTCTTTCGCCCTCTTTGC 60 NA DesignNoJunction Rattus norvegicus 81 Zfp518b ENSRNOG00000028534 ENSRNOT00000037291 1 1 1 60 14 76869168 76869188 GTCATCGTGTTAAACCATCCT 59 76869207 76869228 TTACCTTCATCACATTGGTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem68 ENSRNOG00000008872 ENSRNOT00000012215 3 1 1 84 5 16407344 16407363 TACTCTCACAACTTGTGGGA 58 16395753 16407298 CTTCATAACCATGCCAAACC 58 NA Rattus norvegicus 81 Entpd1 ENSRNOG00000014574 ENSRNOT00000054719 2 1 1 80 1 259808488 259808506 CGACAGTGTCTCCTCTCAG 59 259808550 259811528 GATGCCTTTACCTCCTCCC 60 NA Rattus norvegicus 81 Olr1463 ENSRNOG00000003210 ENSRNOT00000004282 3 1 1 60 10 45939294 45939315 CTCTTGTCCTTCTTCTACTGTG 58 45939255 45939274 TCAGAGTGTAGATGAGTGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dhrs7l1 ENSRNOG00000025648 ENSRNOT00000074990 3 1 2 80 6 95392115 95392793 TTGGGAGAATTGACATTCTGG 58 95392055 95392073 TGAAGACATCCAGGTTGGT 59 NA Rattus norvegicus 81 Adamts12 ENSRNOG00000018865 ENSRNOT00000025693 3 1 1 80 2 61267398 61267417 TGACAGGAAAGGAGATCTGG 59 61267459 61268408 ACCTGGAATAGTAGCTGGAG 58 NA Rattus norvegicus 81 Elovl6 ENSRNOG00000010468 ENSRNOT00000014155 3 1 1 83 2 234194586 234219854 GTCTTCAGTATATTCGGTGCTC 59 234194524 234194542 ACAAACTGACTGCTTCAGG 58 NA Rattus norvegicus 81 Armc8 ENSRNOG00000014521 ENSRNOT00000019536 1 1 1 80 8 107751214 107751234 TATGATGGACCGAATTGTGAC 58 107750851 107751173 AAACTGTGCAAACATCTGAC 57 NA Rattus norvegicus 81 Sarnp ENSRNOG00000030520 ENSRNOT00000009155 3 1 1 80 7 3275170 3295351 CCATCTCTAGAAAGTCTGAGG 57 3295393 3295411 TTCCAGCTGAACTTGTCAC 58 NA Rattus norvegicus 81 Ush1g ENSRNOG00000028456 ENSRNOT00000039387 1 1 1 61 10 103870585 103873080 GAGGTGACCCGGATAAGTG 60 103870542 103870560 ATTGGAAGCTGCCAAATGC 60 NA DesignNoJunction Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000077623,ENSRNOT00000021278 3 2 6 80 1 262013551 262013570 GGACGGATGAGGAATTTGAG 59 262012005 262013508 GACAAGCCACAATCTCCTC 58 NA Rattus norvegicus 81 Hps1 ENSRNOG00000045838 ENSRNOT00000082119 2 1 6 81 1 261999070 261999090 TGTTCTCACTCGTCTATCAGG 59 261996994 261999027 GTCCTCAGCCATCTGAAGG 60 NA Rattus norvegicus 81 Klk1c8 ENSRNOG00000048901 ENSRNOT00000072124 3 1 1 82 1 100038809 100038827 TAATGAACCGCAATGTGGG 59 100038870 100039843 CCTGGTAATTGACACTATAGCA 58 NA Rattus norvegicus 81 Prss53 ENSRNOG00000026040 ENSRNOT00000035672 2 1 1 80 1 199334161 199334297 AGAACACCAGTGATGTTTCC 58 199334100 199334120 TGTAGAGACAGTTACAGGTGG 59 NA Rattus norvegicus 81 Abca15 ENSRNOG00000027505 ENSRNOT00000037026 1 1 1 80 1 190081882 190081900 TCTCTTTCCACCTTTGCGT 60 190081942 190094274 CCTTCAGTAATGTACCCAGGA 59 NA Rattus norvegicus 81 Hn1 ENSRNOG00000003661 ENSRNOT00000004862 2 1 1 145 10 104064365 104064384 TAACATCTTTGGGACACCTG 58 104062214 104063392 CACTTTCTCCCTTGAGGTC 58 NA Rattus norvegicus 81 Slc22a25 ENSRNOG00000017964 ENSRNOT00000024234 1 1 1 80 1 224668222 224668240 TGGGACTTGTTCCGTACAC 60 224613243 224668184 CACAGATAACCATACCACAAATCTC 60 NA Rattus norvegicus 81 Pycr2 ENSRNOG00000003267 ENSRNOT00000004379 3 1 1 81 13 99185015 99185035 GTCGGCTCACAAGATAATAGC 59 99185076 99186200 CAGATTCACACCCATCTTCCT 60 NA Rattus norvegicus 81 Milr1 ENSRNOG00000042524 ENSRNOT00000078968,ENSRNOT00000047657 3 2 2 112 10 94958202 94958222 GGAGCTGTATGCGAATATCTG 59 94959513 94960916 CAAGGCCTTCTTGTTCTGTG 60 NA Rattus norvegicus 81 Rn60_X_0554.1 ENSRNOG00000029005 ENSRNOT00000050742 1 1 1 60 X 55114133 55114152 TCAAGGCAATATCATCACCA 57 55114092 55114110 GTTCACCATGTTCTCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcpt4 ENSRNOG00000024785 ENSRNOT00000089559,ENSRNOT00000041631,ENSRNOT00000027918 2 3 4 81 15 34751609 34752124 CTGGAGCTGAGGAGATTATCG 60 34752165 34752185 TCAGTGACGATCTTCAGAAGG 60 NA Rattus norvegicus 81 Ulk2 ENSRNOG00000002763 ENSRNOT00000003792 1 1 1 80 10 48073682 48073700 CTCTCCACGGAGTTCTGAC 60 48073369 48073642 AAAGGAGCTGTAGTCTTAGTAGG 59 NA Rattus norvegicus 81 LOC498155 ENSRNOG00000032693 ENSRNOT00000042421 2 1 1 81 12 17824788 17830620 ATGGTCAGGATAGCAGTTCC 59 17824726 17824745 ATGAGGAAGTGAGGAGATGG 59 NA Rattus norvegicus 81 AC126897.1 ENSRNOG00000051957 ENSRNOT00000083600 3 1 1 61 1 221994018 221994037 ATGGTGAGGTATTTCCTGGG 59 221993973 221993991 AAGGCTGTGAACACTTGGT 60 NA DesignNoJunction Rattus norvegicus 81 Ccdc84 ENSRNOG00000012137 ENSRNOT00000016227 1 1 1 80 8 48732477 48732570 GGATGAGGTGATTAAAGAGATGG 59 48732419 48732438 TCTAAGACAGATCGGACCAC 59 NA Rattus norvegicus 81 Csf2 ENSRNOG00000026805 ENSRNOT00000032333 1 1 1 85 10 39603060 39603789 GAGTTCTCCATCCAGAGGC 60 39602993 39603011 TTGAGTTTGGTGAGGTTGC 59 NA Rattus norvegicus 81 Ceacam1 ENSRNOG00000020578 ENSRNOT00000051892,ENSRNOT00000090629,ENSRNOT00000029487,ENSRNOT00000027933 2 4 4 80 1 82330015 82331102 CCTAACAAGGTGGATGACG 58 82329953 82329971 TGAAGAGGCTGAAGTTGGT 59 NA Rattus norvegicus 81 Lhcgr ENSRNOG00000016712 ENSRNOT00000022481 3 1 1 80 6 12527079 12527464 CAGTGTAAAGGCAATTCTGGG 60 12519246 12519264 TCCACTGTGCATCTTCTCC 59 NA Rattus norvegicus 81 LOC100360575 ENSRNOG00000046941 ENSRNOT00000071638 2 1 1 80 13 27653530 27653549 CCAGAAAGGAACAGTAGAGC 58 27652379 27653488 ATATCTGCTCCTGCATACAC 57 NA Rattus norvegicus 81 Tm4sf1 ENSRNOG00000015812 ENSRNOT00000021535 1 1 1 80 2 147389863 147389882 CAGAAGGACCAAAGTGTAGC 59 147385944 147389821 AATCCAGAAGGTACTGTCCC 59 NA Rattus norvegicus 81 Bnip3 ENSRNOG00000017243 ENSRNOT00000023477 2 1 2 80 1 211255804 211255824 GACACCACAAGATACCAACAG 59 211251536 211255765 TAATCTTCCTCAGACAGAGTGC 60 NA Rattus norvegicus 81 Necab1 ENSRNOG00000007256 ENSRNOT00000009718 1 1 1 80 5 28737431 28737450 AACTCCTCAGAAGAGCTCAG 59 28729998 28737390 GTCTGCTCTCCTCAGTATGTC 60 NA Rattus norvegicus 81 Olr1366 ENSRNOG00000047259 ENSRNOT00000071158 3 1 1 60 10 12490193 12490214 GAACCCTTTCATCTATAGCCTG 58 12490154 12490173 GAGCACTTTCCTTAAAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012291.2 ENSRNOG00000059417 ENSRNOT00000067346 1 1 1 119 2 192283345 192288480 CAAAGTGCCCTGAACACTG 59 192283244 192283262 CTGGACACTTTGGAGGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Snx24 ENSRNOG00000017488 ENSRNOT00000023507 3 1 1 80 18 48300148 48300167 TCTAAACACGTCAGGAACTG 58 48300209 48346224 GATGACGGCCTGTAAATAGG 58 NA Rattus norvegicus 81 Trim35 ENSRNOG00000009449 ENSRNOT00000012528 3 1 1 82 15 42966519 42966537 GTACTTCGGGAGAAAGCCA 59 42966582 42969601 GTTGTCTGCACCTCATTGTG 60 NA Rattus norvegicus 81 Zc3h3 ENSRNOG00000007684 ENSRNOT00000010120 3 1 1 82 7 116840639 116868081 CAAGGAAGCTTCCAATGCG 60 116840575 116840593 GGGTCTTCTTGACAATGCG 59 NA Rattus norvegicus 81 Hmbs ENSRNOG00000010390 ENSRNOT00000014127,ENSRNOT00000079275 1 2 2 80 8 48668967 48670197 TGGAATTCAAGAGTATTCGGG 58 48668907 48668926 GGATAATGGCACTGAACTCC 59 NA Rattus norvegicus 81 Eif4enif1 ENSRNOG00000018475 ENSRNOT00000024993 1 1 1 80 14 83454198 83454216 CTCCTAAACCCTCGTCCTG 59 83454260 83454734 TGGAGGATGCAGAACTGAG 59 NA Rattus norvegicus 81 Olr163 ENSRNOG00000046945 ENSRNOT00000075652 2 1 1 60 1 169698852 169698870 ACCATACCTACTGTGACCA 57 169698894 169698912 TTCACCTTGACATTGCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r77 ENSRNOG00000049443 ENSRNOT00000072966 2 1 1 80 9 7749985 7772763 TCAAATGCCACAGATCTAGC 58 7749924 7749942 TGGGAAGCAGTGATTTCTC 58 NA Rattus norvegicus 81 Vom2r77 ENSRNOG00000049443 ENSRNOT00000072966 3 1 1 80 9 7749983 7772761 AAATGCCACAGATCTAGCAC 58 7749922 7749942 TTTGGGAAGCAGTGATTTCTC 59 NA Rattus norvegicus 81 RGD1565033 ENSRNOG00000043295 ENSRNOT00000065589 2 1 2 81 10 95243361 95243379 TCCGCGTGCATATACTAGC 60 95243423 95244269 ACAATATACCTGCTTCCGGG 60 NA Rattus norvegicus 81 RGD1565033 ENSRNOG00000043295 ENSRNOT00000080460 1 1 2 60 10 95243370 95243390 ATATACTAGCCCTGGACTCCT 59 95243409 95243430 ATACCGGGTTTAAATTCTGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565033 ENSRNOG00000043295 ENSRNOT00000080460 2 1 2 60 10 95243373 95243391 TACTAGCCCTGGACTCCTC 60 95243412 95243433 TCGATACCGGGTTTAAATTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0040.8 ENSRNOG00000056715 ENSRNOT00000086520 1 1 1 60 20 1931359 1931377 TCAGATACCTCCCACCCTC 60 1931398 1931419 AAGAAAGTCATCTATCTGCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Adarb1 ENSRNOG00000001227 ENSRNOT00000001642,ENSRNOT00000083851 2 2 2 83 20 12070370 12074051 AGTGATGACCACAGGTACAG 59 12074097 12074115 ATGTATTCGCCGTTGATGC 59 NA Rattus norvegicus 81 LOC691995 ENSRNOG00000059827 ENSRNOT00000082511 3 1 1 69 10 57670101 57670119 GATATGGCTGGATGCTGGA 59 57669972 57669990 TCCGTTCTGCTTACTCAGG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Hbq1b ENSRNOG00000028114 ENSRNOT00000035459 1 1 1 80 10 15600506 15600524 TCTCTGTCTGCTCTCAGTG 59 15600336 15600464 CAGACAGTGGCTAAAGAACTG 59 NA Rattus norvegicus 81 Ndufb3 ENSRNOG00000011825 ENSRNOT00000016060 3 1 1 81 9 65478750 65484011 CATTGCTGTCAGACATGGC 60 65484053 65484074 TGTCTGTAATCTGGAAGTTCCA 59 NA InUTR Rattus norvegicus 81 Slc12a7 ENSRNOG00000016372 ENSRNOT00000022635,ENSRNOT00000081339,ENSRNOT00000078039 2 3 3 80 1 32118935 32118956 TCATCAATAATGTGGAGGTGGA 59 32118456 32118894 TGCTGTCCATCTCTTCCTC 59 NA Rattus norvegicus 81 Lysmd1 ENSRNOG00000021099 ENSRNOT00000028640 2 1 1 111 2 196305051 196305069 GTACAATCATCCTGCTCCC 58 196305144 196308047 TAATCTGCTCCATCGTCAC 57 NA Rattus norvegicus 81 Lysmd1 ENSRNOG00000021099 ENSRNOT00000028640 3 1 1 112 2 196305050 196305068 GGTACAATCATCCTGCTCC 58 196305144 196308047 TAATCTGCTCCATCGTCAC 57 NA Rattus norvegicus 81 Arnt2 ENSRNOG00000013017 ENSRNOT00000017636 1 1 1 80 1 146456056 146456074 GTGAAAGAAGGAGAAGCCC 58 146440713 146456012 TATGCTCATTCCTGCTGGT 59 NA Rattus norvegicus 81 Vamp5 ENSRNOG00000012659 ENSRNOT00000016984 1 1 1 83 4 100232477 100232495 ATTTCGACAAGGTCCTGGA 59 100231719 100232430 AGGCAGAACTCATGTCCAG 59 NA Rattus norvegicus 81 Mog ENSRNOG00000000775 ENSRNOT00000001008 1 1 1 80 20 2009183 2009203 TCTCTGTAGGCCTTGTATTCC 59 2010101 2010407 TCCGATGGAGATTCTCGAC 59 NA Rattus norvegicus 81 Pfkfb2 ENSRNOG00000004162 ENSRNOT00000037679,ENSRNOT00000005729,ENSRNOT00000050354,ENSRNOT00000050859,ENSRNOT00000067445 1 5 5 80 13 47424739 47424759 GGTATCCAGAGGAATTTGCAC 59 47424016 47424697 CCAGGTCCTGGTATGACTC 59 NA Rattus norvegicus 81 Filip1l ENSRNOG00000001645 ENSRNOT00000046383 3 1 1 80 11 45117233 45123148 AAACCCATGAACGAGTTGG 58 45117171 45117192 TACCATTAAGAGTTGTTCCACG 59 NA Rattus norvegicus 81 Vom1r41 ENSRNOG00000029852 ENSRNOT00000049350 1 1 1 60 1 67743329 67743349 CTTCCAAGCAATCACAATCAC 58 67743367 67743389 GACTCTGTGTTTAAGCATCATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dbp ENSRNOG00000021027 ENSRNOT00000028546,ENSRNOT00000091597,ENSRNOT00000091606 3 3 3 64 1 101692628 101692646 CTTCCTCCTTGTCCCATGG 60 101692674 101692692 GTCTGCATCATGACGTTCC 59 NA DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 Olr1148 ENSRNOG00000006584 ENSRNOT00000008605 2 1 1 60 8 19548916 19548937 CCTAGTATTATTGTCCCTGCTC 58 19548954 19548976 CAACAGAAGAGTATGGAGTAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr63 ENSRNOG00000018551 ENSRNOT00000025027 2 1 1 60 1 167871292 167871310 TATCTGCTGGTTCCTCCTG 59 167871331 167871352 GGATCTCCTTTGTCTTTACTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1310335 ENSRNOG00000039183 ENSRNOT00000033837 3 1 1 80 11 54401637 54401657 TGAAGACCCAAACATAAGTGC 59 54399927 54401599 CGGGTTTCATTATCTATAGCCAG 59 NA Rattus norvegicus 81 Ssr2 ENSRNOG00000019940 ENSRNOT00000027123 3 1 1 83 2 187952596 187952614 TTCCTTCCCTCCAGAAGAC 58 187952661 187955601 GAGACATTGCTAGCAGGAG 58 NA Rattus norvegicus 81 Nradd ENSRNOG00000020936 ENSRNOT00000028416 3 1 1 98 8 118891401 118892279 GTGTATTCAGATACAGCCCTG 58 118891323 118891343 AAATAGGGAGGAGGTATTGGG 59 NA Rattus norvegicus 81 Prkce ENSRNOG00000015603 ENSRNOT00000020959 1 1 1 80 6 9880216 9938389 GATCTACAGGGATTTGAAACTGG 59 9938429 9938447 TTGCACATCCCAAAGTCAG 58 NA Rattus norvegicus 81 Cep85 ENSRNOG00000016249 ENSRNOT00000065983,ENSRNOT00000078063 3 2 2 80 5 152375722 152375740 CAGCTCATCAGGGAGTCTC 59 152371302 152375680 ACCTTTAACCCTTTCCTCCTG 60 NA Rattus norvegicus 81 AABR07035375.1 ENSRNOG00000046761 ENSRNOT00000071795 2 1 1 136 12 11808211 11808884 AATGACTGTTCAGATGGAGAG 58 11808095 11808113 CTGGTCTCAGGAACTTGAG 57 NA Rattus norvegicus 81 Foxn2 ENSRNOG00000040110 ENSRNOT00000061693 3 1 1 80 6 12179706 12179724 GGAAGAATTCTGTTCGGCA 58 12179768 12188463 TTCCATTAACCTTGCCGTG 59 NA Rattus norvegicus 81 Vom1r53 ENSRNOG00000049902 ENSRNOT00000038977 3 1 1 60 1 66397834 66397855 CATCATATCAAACCACCTGGTC 59 66397875 66397894 CAAAGAGGTCACTGTCTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070416.2 ENSRNOG00000050915 ENSRNOT00000074153 2 1 1 132 8 69530709 69530733 CTCTGACAACATACGTATATCTGTG 59 69489040 69489061 GAACAGTGCACAGATTATACAC 58 NA DesignNoJunction Rattus norvegicus 81 Arhgef9 ENSRNOG00000007733 ENSRNOT00000076965,ENSRNOT00000063861,ENSRNOT00000084678,ENSRNOT00000042654 2 4 5 80 X 64307683 64311422 CCAAGACCACAGTGATTACAG 59 64307623 64307642 TTGCGTTCATTGATCTGCTG 60 NA Rattus norvegicus 81 Eid2 ENSRNOG00000019310 ENSRNOT00000026114 3 1 1 60 1 85516717 85516738 CGTTTACTATAGCCCTAACTGC 59 85516678 85516700 CAACCCAGTTCTTCTATTAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc25a44 ENSRNOG00000025269 ENSRNOT00000068360 1 1 1 81 2 187782806 187786333 GAGCCAGACAGAAGGTCTC 60 187782743 187782761 TCTTCTTGTCCAGGTGCTC 59 NA Rattus norvegicus 81 Slc25a44 ENSRNOG00000025269 ENSRNOT00000068360 2 1 1 82 2 187782806 187786333 GAGCCAGACAGAAGGTCTC 60 187782742 187782760 TTCTTCTTGTCCAGGTGCT 59 NA Rattus norvegicus 81 Rn60_3_0430.2 ENSRNOG00000006829 ENSRNOT00000008925 1 1 1 60 3 37875826 37875845 ATGTGTTTGACAAGGAAGGG 58 37875785 37875806 GCTAGGACATGATGGATTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_20_0024.1 ENSRNOG00000026374 ENSRNOT00000030972 3 1 1 60 20 2332208 2332226 CTACAAGCCTGTGAAGCAC 59 2332248 2332268 GATAAATTGGGAGGAGTGGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lox ENSRNOG00000014426 ENSRNOT00000074226,ENSRNOT00000019844,ENSRNOT00000083881 1 3 3 82 18 47505055 47505425 TTCTAAAGGTCAGTGTAAACCC 58 47504994 47505012 GTAGCGAATTTCACAGCGT 59 NA Rattus norvegicus 81 Tnrc18 ENSRNOG00000024482 ENSRNOT00000084865,ENSRNOT00000038203 3 2 2 80 12 13897007 13897026 GGGTTCTCATTCCTATGGAC 58 13897069 13897755 CCACACGGTATATGTCAGG 57 NA Rattus norvegicus 81 Mageb5 ENSRNOG00000003110 ENSRNOT00000004145 1 1 1 80 X 60850237 60852486 CTACTGAAGACTATACTCCTACCT 58 60850180 60850198 ATTCTTCAAGCGTTTGCGA 59 NA InUTR Rattus norvegicus 81 Fbxw17 ENSRNOG00000030027 ENSRNOT00000044073 2 1 1 80 17 15085052 15085071 GAGTTCCGTGTGAAATCTGG 59 15084702 15085010 CAGCTGATCTATCGTTCCTG 58 NA Rattus norvegicus 81 Rnf39 ENSRNOG00000000781 ENSRNOT00000080122 1 1 3 61 20 2099718 2100541 ATTCCCAAGCTGACCTGAC 60 2099675 2099694 AGAGGAGATGAGCAGATCAC 59 NA DesignRelaxed Rattus norvegicus 81 Xbp1 ENSRNOG00000010298 ENSRNOT00000014044 1 1 1 80 14 85754791 85756265 GTGGATTTGGAAGAAGAGAACC 59 85756305 85756324 CTCAATCACAAGCCCATGAG 59 NA Rattus norvegicus 81 LOC100911963 ENSRNOG00000049277 ENSRNOT00000028265 3 1 1 113 1 88776033 88776681 AGCCTCAGGACAAGAAGAG 59 88776850 88776868 GGAGAAGGAGGAAGGTCAG 59 NA Rattus norvegicus 81 Tmem185a ENSRNOG00000011047 ENSRNOT00000066919 3 1 1 80 8 69586407 69593030 TCAACCCGAGTAAATTCCTC 57 69586346 69586364 GAATGATGCCATCCAAACG 58 NA Rattus norvegicus 81 Rbm4b ENSRNOG00000050741 ENSRNOT00000067093 3 1 2 82 1 220047525 220047543 GCCTTTGTACACATGGAGC 59 220040137 220047480 CACATCCCACCTTGAAACTC 59 NA Rattus norvegicus 81 Gmcl1 ENSRNOG00000017838 ENSRNOT00000081201,ENSRNOT00000024414 1 2 3 80 4 118500977 118503799 TAGCATTTAGATTGCGCTTGG 60 118500917 118500936 TCAGGATTTGGTAGCCAGTC 60 NA Rattus norvegicus 81 Gmcl1 ENSRNOG00000017838 ENSRNOT00000081201,ENSRNOT00000024414 3 2 3 80 4 118521721 118521742 AGATGACGTCTTAATAAAGCCC 58 118518704 118521682 TGTATCAAACCATCCAACTGC 59 NA Rattus norvegicus 81 Slamf1 ENSRNOG00000059073 ENSRNOT00000082393 1 1 1 80 13 90206149 90206169 GGGTCATCATATTCGTCATCC 59 90206209 90210495 GATTTGGTTTACCACTGGGAG 59 NA Rattus norvegicus 81 Slamf1 ENSRNOG00000059073 ENSRNOT00000082393 3 1 1 80 13 90206150 90206171 GGTCATCATATTCGTCATCCTG 59 90206210 90210496 TGATTTGGTTTACCACTGGGA 60 NA Rattus norvegicus 81 Tra2a ENSRNOG00000009156 ENSRNOT00000012325 2 1 1 80 4 78910088 78910106 TATGATCAGCGAACTGGGA 58 78908397 78910046 TTCCATAGCCTCCTTAGAGTC 59 NA Rattus norvegicus 81 LOC100360638 ENSRNOG00000018936 ENSRNOT00000051665,ENSRNOT00000037975 3 2 2 75 1 84893943 84894773 TGGTTCAGTGACATTTAGGG 58 84893887 84893905 CTTCTGAGTAGCATCCAGG 57 NA DesignNoJunction Rattus norvegicus 81 RGD1359290 ENSRNOG00000027271 ENSRNOT00000029782 3 1 1 80 10 95642771 95642792 CACCAAGTATCTGAAGGATGTC 59 95642833 95642944 GCATTACTCTCGACTCCAC 58 NA Rattus norvegicus 81 Icos ENSRNOG00000046196 ENSRNOT00000071226,ENSRNOT00000091060 3 2 2 90 9 67781907 67781925 TACAGATCCAGTGTGCACG 60 67781978 67784176 AGGTCATACCTGCAAGTCTG 60 NA Rattus norvegicus 81 Nde1 ENSRNOG00000058007 ENSRNOT00000086392 1 1 1 80 10 895953 895971 CAAGCTGAAACCAGAAACC 57 893866 895911 AAACTTCTCCTTCACAGACTC 58 NA Rattus norvegicus 81 Gda ENSRNOG00000018282 ENSRNOT00000024775 2 1 1 80 1 238983418 238984861 GTGATATTTCTGAGGCTGTTATCC 60 238982623 238982642 TTCCACCCACATAAACCTCC 60 NA Rattus norvegicus 81 Tmem95 ENSRNOG00000043507 ENSRNOT00000065524 3 1 1 80 10 56487742 56487760 CTGTACAACTGCTCCACCT 59 56487594 56487698 CAGATCGTGACTTCCTGGG 60 NA Rattus norvegicus 81 Tmtc1 ENSRNOG00000001854 ENSRNOT00000064320 3 1 1 80 4 182678307 182687884 GAGTCCTTATTCAGGTCTGG 57 182678246 182678264 GTCTTTGAGGAAATTGGCG 57 NA Rattus norvegicus 81 Olr621 ENSRNOG00000060243 ENSRNOT00000084665 1 1 1 80 3 76662522 76662545 CCTTAAGATTACCATTCGGCC 59 76662587 76662605 CCATGCAGGCAAGTTTCAG 60 NA Rattus norvegicus 81 Kdm4b ENSRNOG00000049221 ENSRNOT00000089374,ENSRNOT00000071199,ENSRNOT00000091450 2 3 3 80 9 10658953 10658973 GCTCAGACATTCTATGAGGTC 58 10658811 10658911 GTCTCTGCTTGTGATGCTC 59 NA Rattus norvegicus 81 Cxcr4 ENSRNOG00000003866 ENSRNOT00000005143,ENSRNOT00000091514 1 2 2 80 13 45316571 45318789 GCATTGCCATGGAAATATACAC 59 45316512 45316530 AGGGTTCCTTGTTGGAGTC 59 NA InUTR Rattus norvegicus 81 LOC688828 ENSRNOG00000037305 ENSRNOT00000056435 1 1 1 80 8 113688281 113689064 CCATGGACTAGAGGTCTTGG 59 113688220 113688238 AGAAATGCAGGTAGGCCTC 60 NA Rattus norvegicus 81 Nudt9 ENSRNOG00000002186 ENSRNOT00000002973 3 1 1 80 14 7044382 7045494 TCCTATTATAACCAGGTGGAAGAG 59 7044325 7044344 AACTGCAAGATGCATTTCCC 60 NA Rattus norvegicus 81 Arhgap9 ENSRNOG00000006946 ENSRNOT00000057833,ENSRNOT00000035382 2 2 2 82 7 70617610 70617710 AGAACTTCCAGTCGGTGTG 60 70617756 70617774 GGTCTCTTTGCGATTAGCC 59 NA Rattus norvegicus 81 Ggt1 ENSRNOG00000047697 ENSRNOT00000074533 3 1 1 80 20 14021540 14022545 ATGTGTCTCAGGTCATCCG 59 14021478 14021498 GAGTGGTTTCATCAGTGATGC 60 NA Rattus norvegicus 81 Gsap ENSRNOG00000028801 ENSRNOT00000083964,ENSRNOT00000039953 2 2 2 80 4 10456688 10457222 CAAGAATTCCTAATTGCGTCCT 59 10456629 10456648 AGAGGAGTAGGGTAAGAGCA 59 NA Rattus norvegicus 81 Olr310 ENSRNOG00000045726 ENSRNOT00000074710 2 1 1 60 1 213348736 213348755 GTGCTCAGTGCCTATATCAG 58 213348775 213348796 AGGTAAACTTGCTTCTTTCTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_6_0657.1 ENSRNOG00000023194 ENSRNOT00000046071 2 1 1 60 6 56069945 56069964 GTCTCGTGGACCTTACTCTC 59 56069904 56069922 ACTCTTGTTCTGAGCACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stfa2l3 ENSRNOG00000050586 ENSRNOT00000042777 1 1 1 80 11 67451719 67452326 GATTGCTGACAAGGTCAAGC 60 67452368 67452387 ACTTTATACTGGACGGCCTC 59 NA Rattus norvegicus 81 Stfa2l3 ENSRNOG00000050586 ENSRNOT00000042777 2 1 1 80 11 67451720 67452326 ATTGCTGACAAGGTCAAGC 59 67452369 67452388 AACTTTATACTGGACGGCCT 59 NA Rattus norvegicus 81 Mrpl48 ENSRNOG00000018042 ENSRNOT00000024290 3 1 1 80 1 165579054 165579074 GACTCTAGCAGAAAGTTACGC 59 165568449 165579013 ATCGCATAACTTTCCTCGAC 58 NA Rattus norvegicus 81 Upb1 ENSRNOG00000038258 ENSRNOT00000058237 2 1 1 80 20 14167688 14169304 GACTTTCAAGATGACGGGC 59 14167626 14167645 ATGTTGGGACTGTAGTTGGG 60 NA Rattus norvegicus 81 Rpl36al ENSRNOG00000011494 ENSRNOT00000057222 3 1 1 82 X 105404877 105404896 GCAGATCTAAGAGGATGCTG 58 105404941 105405273 GATCACTTGGCCCTTTCTC 58 NA Rattus norvegicus 81 Loxl2 ENSRNOG00000016758 ENSRNOT00000085237,ENSRNOT00000058663 1 2 2 80 15 51364424 51365053 CAATTGTCACGTAGGTGGAG 59 51365093 51365114 AGCTGATTATTTAGGAGTCCAC 58 NA Rattus norvegicus 81 Plvap ENSRNOG00000017676 ENSRNOT00000023926,ENSRNOT00000083345 2 2 2 81 16 19913525 19913645 ACCCATTGATCCAGCTAGC 60 19913462 19913481 GACAGCAGGGTTGACTAGAG 60 NA Rattus norvegicus 81 Plvap ENSRNOG00000017676 ENSRNOT00000023926,ENSRNOT00000083345 3 2 2 84 16 19913530 19913650 CCTCCACCCATTGATCCAG 60 19913464 19913482 CAGCAGGGTTGACTAGAGG 60 NA Rattus norvegicus 81 Adgrf3 ENSRNOG00000024766 ENSRNOT00000032829 1 1 1 80 6 27538120 27538138 GTTCCAGACGTCCAATGAG 58 27538180 27539835 ATGCTTTCATACTCACCTGTC 58 NA Rattus norvegicus 81 Ammecr1 ENSRNOG00000022166 ENSRNOT00000042639 1 1 1 80 X 114232511 114232529 TGTGCTCTACTGTCACCTG 59 114183311 114232468 GTTACAAACAGTGGGTAGGG 58 NA Rattus norvegicus 81 Hook1 ENSRNOG00000026226 ENSRNOT00000012396 1 1 1 80 5 114989759 114991258 GGAAACTGAGCAAAGGTTGAG 60 114991298 114991318 TCTTGTAACGACTTCTGGAGG 60 NA Rattus norvegicus 81 Chid1 ENSRNOG00000019351 ENSRNOT00000026215,ENSRNOT00000044390 3 2 2 80 1 214063743 214065007 ATGATGTGGACCAAGGGTG 60 214062890 214062908 CTTCAAACAGAAGCCGAGG 59 NA Rattus norvegicus 81 Fam92a1 ENSRNOG00000016338 ENSRNOT00000022249 3 1 1 80 5 25743978 25747339 GACATGTAATTTCGCAGGCA 59 25743917 25743936 TTTCCTCCAGATGACGAGTG 60 NA Rattus norvegicus 81 Dazl ENSRNOG00000023474 ENSRNOT00000066517,ENSRNOT00000077532 3 2 2 80 9 12640632 12640650 TGGAGTAGTCCAAATGCTG 57 12640692 12641905 AGGATATGCCTGAACATACTG 57 NA Rattus norvegicus 81 Aldh7a1 ENSRNOG00000014645 ENSRNOT00000020325 2 1 1 80 18 51643524 51648162 TCTGGGCAGATATTCCTGC 59 51643462 51643481 GTAATTGGATCTTCTCCCGC 59 NA Rattus norvegicus 81 Cycs ENSRNOG00000010452 ENSRNOT00000014058 2 1 1 125 4 80332171 80332295 GAACAAAGGTATCACCTGGG 58 80332065 80332084 ATTAGGTCTGCCCTTTCTCC 59 NA Rattus norvegicus 81 Dbil5 ENSRNOG00000007771 ENSRNOT00000010227 2 1 1 80 10 64376033 64376503 CGTCTACTCACAGTACCAGG 59 64376545 64376564 TTTCAAACTCCACTTGGCTC 59 NA InUTR Rattus norvegicus 81 Dbil5 ENSRNOG00000007771 ENSRNOT00000010227 3 1 1 80 10 64376034 64376504 GTCTACTCACAGTACCAGGT 58 64376546 64376565 ATTTCAAACTCCACTTGGCT 58 NA InUTR Rattus norvegicus 81 Ttyh1 ENSRNOG00000032699 ENSRNOT00000068459 1 1 1 80 1 73741506 73741524 CTAGCCAGCATCCACTCTC 60 73741025 73741462 TAACAAGGGCTTCTGTGCA 60 NA Rattus norvegicus 81 Mansc4 ENSRNOG00000036925 ENSRNOT00000055463 3 1 1 80 4 181477107 181477127 AGTTCCTCAAGTACTACTCGG 59 181472356 181477068 CATTACAGGAAACATCCTTCCG 60 NA Rattus norvegicus 81 Ddx31 ENSRNOG00000013040 ENSRNOT00000064323 2 1 1 80 3 7427777 7428587 TCCACCCACATCTAATTTCC 57 7430096 7430114 CTGGGATACTCTGCTTCTG 57 NA Rattus norvegicus 81 Smim20 ENSRNOG00000051190 ENSRNOT00000076276 2 1 3 80 14 60069712 60069731 GCTTCATCTCTATGGTCGGA 59 60060090 60069671 GCTCCTTCTGGTATTCTTCCA 60 NA Rattus norvegicus 81 Sema5b ENSRNOG00000002238 ENSRNOT00000030074 1 1 1 80 11 68307653 68307972 AGATTCCTGTCATCCTGCC 59 68307216 68307236 TGACTATCAGGTGGATGAGAC 59 NA Rattus norvegicus 81 Cysrt1 ENSRNOG00000010600 ENSRNOT00000014080 2 1 1 63 3 2459305 2459324 TAAGAAGACAGACTGCTGCT 59 2458931 2458949 TTGACAACCATCTCATGGG 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Wdr74 ENSRNOG00000042878 ENSRNOT00000088282,ENSRNOT00000066823 3 2 2 80 1 224934344 224934364 ATTCCAGAGCCAGAGATACTG 59 224934404 224935785 GTGATAAGAGTGCCATCATCG 59 NA Rattus norvegicus 81 Syn1 ENSRNOG00000010365 ENSRNOT00000014250 1 1 1 80 X 1333188 1334441 GTCAAAGTTGTGAGGTCTCTG 59 1334482 1334501 GTAGTCTCCATTACGTGCCA 60 NA Rattus norvegicus 81 C4bpb ENSRNOG00000004125 ENSRNOT00000005505 2 1 1 80 13 47387960 47387978 CCTACCTGTGAGTCCATCC 59 47387363 47387918 CTCCTGAAAGGCAAGAATAGC 59 NA Rattus norvegicus 81 Rn60_5_0815.7 ENSRNOG00000051118 ENSRNOT00000076023 1 1 1 80 5 77489989 77490354 GCTCTACGGTAGAACAAAGG 58 77489928 77489947 CTAGTGATTACATGCGCCTC 59 NA Rattus norvegicus 81 LOC100911002 ENSRNOG00000050177 ENSRNOT00000071895 1 1 1 80 1 146989344 146989457 TTATCGTGGAAACGCAAGAG 59 146989499 146989518 TTTCTTCAGAGCAGTCATGG 58 NA Rattus norvegicus 81 Sun3 ENSRNOG00000005105 ENSRNOT00000006818 1 1 1 80 14 89220955 89221995 CGGATATGATTCTTCAGCCAG 59 89220895 89220914 GCTTAATCAGGATGTGACCC 59 NA Rattus norvegicus 81 Mir361 ENSRNOG00000035544 ENSRNOT00000053667 2 1 1 61 X 84708958 84708978 AGCTTATCAGAATCTCCAGGG 59 84708917 84708935 AATCAGAATCACACCTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_5_0814.25 ENSRNOG00000051326 ENSRNOT00000077037 1 1 1 60 5 77474673 77474693 ATTCATCAGAGATTCCCACAC 58 77474633 77474652 GGCTTTACCACATTCAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Exoc3l1 ENSRNOG00000015641 ENSRNOT00000021015 1 1 1 80 19 37248647 37249752 CCAAGATTACAAGCAGTACCAG 59 37248588 37248608 CACATATGCCTCCAAGAATCG 59 NA Rattus norvegicus 81 Grb2 ENSRNOG00000003990 ENSRNOT00000005347 3 1 1 90 10 104196480 104201859 CCCTGTCAGTCAAGTTTGG 58 104196408 104196427 TTAAACTTCACCACCCACAG 58 NA Rattus norvegicus 81 Tspy26 ENSRNOG00000026770 ENSRNOT00000036956 3 1 1 60 3 148706276 148706296 CCTGATGAATTTGGAGGTGAG 59 148706236 148706255 GAACTTGAACTTGCAACCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir672 ENSRNOG00000040357 ENSRNOT00000062110 2 1 1 63 X 74982122 74982141 TTTGAGGTTGGTGTACTGTG 58 74982078 74982096 CTTTCGAAGATGGCGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sall4 ENSRNOG00000050035 ENSRNOT00000071119,ENSRNOT00000070964 1 2 2 80 3 165520822 165522726 ACCTGAAGGTACACTACATGAC 60 165520763 165520782 TGGTATTCTCTATGGCCAGC 59 NA Rattus norvegicus 81 Xylt2 ENSRNOG00000003728 ENSRNOT00000055582,ENSRNOT00000082972 2 2 2 80 10 82390998 82391018 TAGCGTTCTTATCCAAGAACC 58 82390747 82390957 CTTGCTTCTTGATGAACCTG 57 NA Rattus norvegicus 81 Vom2r25 ENSRNOG00000046431 ENSRNOT00000071085 2 1 1 80 8 3839942 3860960 GAGATTTCCAATGAGACAGATATGG 60 3839886 3839904 GCAGTGGATCTTGTCTGTG 59 NA Rattus norvegicus 81 Ap3s1 ENSRNOG00000003829 ENSRNOT00000064116 2 1 1 80 18 40732638 40755228 AGCCCTATAGTGAAGATACGC 59 40755268 40755288 TACAAACATTCTCGTCTCGCT 60 NA Rattus norvegicus 81 Cd86 ENSRNOG00000038835 ENSRNOT00000003129,ENSRNOT00000078936 2 2 2 80 11 67102107 67104169 CAGTGATCGCCAACTTCAG 59 67104211 67104231 AGCAGGTCAAATTTATGCCAG 59 NA Rattus norvegicus 81 Inha ENSRNOG00000020097 ENSRNOT00000027227 1 1 1 120 9 82700773 82700791 GACCTCTGAACCAGAGGAG 59 82702378 82702396 GAAGAGACCTTCCTCAGGC 60 NA DesignNoJunction Rattus norvegicus 81 Tomm34 ENSRNOG00000029799 ENSRNOT00000040156 3 1 1 80 3 160459452 160459474 CCTATGTCGACTATAAGACTGTG 58 160455536 160459414 CTCTGGTTATTCTGTTGATGC 57 NA Rattus norvegicus 81 Optc ENSRNOG00000003059 ENSRNOT00000064556 2 1 1 60 13 50744439 50746110 AAAGGATGTACGTCGAATGG 58 50744398 50744416 ATGAGGTTCTGAGGGAAGG 58 NA DesignNoJunction Rattus norvegicus 81 Folr1 ENSRNOG00000019902 ENSRNOT00000079675,ENSRNOT00000026962 1 2 2 81 1 166935456 166939255 AAGTTACACGACCAGTGCA 60 166935393 166935414 AAATGTCCTTATGTGCTTCCTG 59 NA Rattus norvegicus 81 RGD1304963 ENSRNOG00000008942 ENSRNOT00000011832 2 1 1 73 6 23341380 23341398 CAGCTCAGACTGGGAATCC 60 23345222 23345240 GTTCTTGCTTGGCGTTCTC 60 NA DesignNoJunction Rattus norvegicus 81 Gnl2 ENSRNOG00000009430 ENSRNOT00000012702 3 1 1 80 5 143051044 143051064 ATGAGAAGATTGCCAAGTACC 58 143051103 143051532 AGTCTTTGGATATTCTGATGGC 58 NA Rattus norvegicus 81 Atp6v1c2 ENSRNOG00000050553 ENSRNOT00000081433,ENSRNOT00000071977 1 2 2 80 6 42602743 42602762 CAAGCTATGTACAGTGGCAG 59 42592609 42602700 CCTCAGCGATCAATTTGGT 58 NA Rattus norvegicus 81 Astn1 ENSRNOG00000005667 ENSRNOT00000076284 1 1 4 80 13 76055844 76166867 TTCGTGCTGGAGATCTCAG 59 76166910 76166929 CAAAGTACCATTCTCCAGCC 59 NA Rattus norvegicus 81 Oard1 ENSRNOG00000012679 ENSRNOT00000067623,ENSRNOT00000078227 1 2 2 81 9 14550180 14550562 GAAGGAAGTCGAATCACTTATGTG 60 14550122 14550141 CCTCACTGATACAATGGGCT 60 NA Rattus norvegicus 81 Oard1 ENSRNOG00000012679 ENSRNOT00000067623,ENSRNOT00000078227 2 2 2 81 9 14550187 14550565 CCAGAAGGAAGTCGAATCAC 58 14550125 14550145 CACTGATACAATGGGCTAGAG 58 NA Rattus norvegicus 81 Mrps7 ENSRNOG00000003797 ENSRNOT00000005089 2 1 1 80 10 104155884 104156430 GGAACCTTCCAGGGATCAC 60 104156471 104156492 AATGTTCCTTGTCAATCAAGGG 59 NA Rattus norvegicus 81 Ccdc6 ENSRNOG00000024019 ENSRNOT00000032159 3 1 1 80 20 19752249 19752269 ATATCCGGTTCCTAAAGAACG 58 19746408 19752207 CCATCTTCTCCGAATGCTG 58 NA Rattus norvegicus 81 Slc27a6 ENSRNOG00000058193 ENSRNOT00000077443 2 1 1 80 18 53660228 53662711 CACTTTCAGGTGGAAAGGAG 59 53662751 53662772 GCTTCCTGTATAAAGTCCAACC 59 NA Rattus norvegicus 81 Olr1409 ENSRNOG00000047344 ENSRNOT00000046476 2 1 1 60 10 36531580 36531599 CCCTTCATTTACAGCCTGAG 58 36531622 36531640 TGTTGAAGAGCCTTGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbf1 ENSRNOG00000008577 ENSRNOT00000011560 2 1 1 80 10 104709811 104711743 CCTCAAAGGCAAAGTTCCTC 59 104708734 104708752 CATCCGAGTCACTGGAGAC 60 NA Rattus norvegicus 81 Vom1r26 ENSRNOG00000032657 ENSRNOT00000048309 2 1 1 60 14 62309472 62309493 TTTCTTTAGAGGAATCCCTCAG 57 62309511 62309532 ATCACCCATGAAATTCTTCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajb6 ENSRNOG00000010353 ENSRNOT00000035996 2 1 1 98 4 2724663 2724683 AGGCATATGAAGTGTTATCGG 58 2726083 2727197 AATGACTTCCACCTCCTCC 59 NA Rattus norvegicus 81 Esrrg ENSRNOG00000002593 ENSRNOT00000003489 3 1 1 80 13 106617938 106666803 CATATCCCAGGCTTCTCCA 59 106666844 106666865 CAGGATCAAGATTTCCATCCAC 59 NA Rattus norvegicus 81 Lgals9 ENSRNOG00000012681 ENSRNOT00000017071,ENSRNOT00000017042 2 2 2 80 10 64757310 64757477 GCTAAGAGGTTCCATATCAACC 59 64757516 64757536 CACAACCTTCTCATTGAAACG 58 NA Rattus norvegicus 81 Bcl2l13 ENSRNOG00000012394 ENSRNOT00000016561 1 1 1 80 4 153395977 153395998 TATGTTGTTCTCAGCTACTTGG 58 153396036 153409411 GACATCTAGTTGACTTCCTTGG 59 NA Rattus norvegicus 81 Slc25a31 ENSRNOG00000038398 ENSRNOT00000058476 1 1 1 80 2 127550408 127550426 GTTTGGTGTCTCCGTTCAG 59 127550468 127551378 GGCAATAAGCCCTTAACAGTG 60 NA Rattus norvegicus 81 Spsb2 ENSRNOG00000015125 ENSRNOT00000020493 3 1 1 102 4 157327783 157328047 AAAGAAGAGCGGAGGAACC 60 157328110 157328131 AATGGCAGACTGGATATTTGAC 59 NA Rattus norvegicus 81 Mcidas ENSRNOG00000039588 ENSRNOT00000076278 2 1 1 80 2 44866349 44866828 TCATTGCAGATTCGTCCTC 58 44866872 44866890 AAGACGGAACATCACAAGG 58 NA Rattus norvegicus 81 Lctl ENSRNOG00000009193 ENSRNOT00000087622,ENSRNOT00000012308 1 2 2 80 8 69079558 69079576 TCTGTCTTGGTTGGTTTGC 59 69079620 69084115 CGCTCTTTGTTCCAATGTG 58 NA Rattus norvegicus 81 Vom1r92 ENSRNOG00000057461 ENSRNOT00000087069 3 1 1 60 4 121761540 121761562 CTACTCAAGGATGAAGTTCAAGG 59 121761579 121761600 GGACACAATAATTTGGACACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360200 ENSRNOG00000025217 ENSRNOT00000038958 2 1 1 154 12 12188261 12188279 CATCAAGTTCGACTTGGCA 59 12188538 12188556 CACTAATGTGGCGGAATGG 59 NA DesignNoJunction Rattus norvegicus 81 Sphkap ENSRNOG00000016388 ENSRNOT00000090881,ENSRNOT00000022281 2 2 2 80 9 89076196 89082201 TTGATGTTTCACAGTGCCC 59 89076134 89076153 AGTTGGTACTGTTTGGTCTG 58 NA Rattus norvegicus 81 Adgrg6 ENSRNOG00000011411 ENSRNOT00000030511 2 1 1 80 1 8600410 8600429 ATGTTCAGAAACAGTGGAGG 58 8599715 8600369 TAGCTGTCTTACTCCAATCTG 57 NA Rattus norvegicus 81 Rn60_2_1417.1 ENSRNOG00000051125 ENSRNOT00000075973 2 1 1 60 2 122019746 122019764 CCTTCACCTAAACCCACCA 59 122019787 122019806 GATCCTTGGTCACATTCCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1115 ENSRNOG00000050583 ENSRNOT00000041855 3 1 1 60 8 17775949 17775970 GGTACACAATCATCATGAACCC 60 17775910 17775931 AAGAGTAGGGAGAGTAGAACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Irgm ENSRNOG00000031138 ENSRNOT00000045545 3 1 1 82 10 34218918 34221543 CTGGATCAGGGTTTGAGGA 59 34218854 34218872 AGCAAGAAGGTCCTGTGTC 60 NA InUTR Rattus norvegicus 81 Rpp21 ENSRNOG00000000786 ENSRNOT00000081091,ENSRNOT00000091967 1 2 7 64 20 2515742 2515760 ACACAGAGAAGACCATCGC 60 2515882 2515900 GAGCGTCCTCTTCACAGAG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07028012.1 ENSRNOG00000053439 ENSRNOT00000081052 3 1 1 80 17 52939805 52939823 ATTCCAACCAGTGGGATGG 60 52939983 52940001 TGTTTCTGAAGCGCTTCTC 59 NA DesignNoJunction Rattus norvegicus 81 Msn ENSRNOG00000030118 ENSRNOT00000076181,ENSRNOT00000076178 1 2 3 60 X 65291054 65291072 AAGATTGAACGGGAGAAGG 57 65291096 65291114 TGGTCTGCTCCTCAATCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072207.1 ENSRNOG00000011155 ENSRNOT00000014838 1 1 1 152 10 105564958 105564976 AAAGCTGCTGTTGCTAAGG 59 105565094 105565114 GGTTTGACCCTTCTGACCT 59 NA DesignNoJunction Rattus norvegicus 81 Ugt2b17 ENSRNOG00000001990 ENSRNOT00000002728 1 1 3 80 14 22823304 22823323 GGACTTTCTCACCATGTCCA 60 22823363 22825179 GCATTCTCCTTATAGGAAGGGT 60 NA Rattus norvegicus 81 Pde2a ENSRNOG00000019560 ENSRNOT00000026586,ENSRNOT00000090959 2 2 2 80 1 166623814 166623834 CTCCTTATGACCTCCTGTGAC 60 166623876 166624260 TTTGTAGATCAGCTCCGCA 59 NA Rattus norvegicus 81 Hjurp ENSRNOG00000022911 ENSRNOT00000051065 3 1 1 80 9 95361815 95361834 TACAACCAACCCTTTGAGGA 59 95359487 95361772 CCAGACTCTCAATCCCTGG 59 NA Rattus norvegicus 81 RGD1309748 ENSRNOG00000002545 ENSRNOT00000003439 1 1 1 80 10 6844087 6858315 CTCTGCATGGTCTTAGTGG 58 6844025 6844044 CACTGCTTACATGTGTAGGA 57 NA Rattus norvegicus 81 Clk4 ENSRNOG00000003714 ENSRNOT00000005048 1 1 1 80 10 36732181 36732199 GAACACCTGGCAATGATGG 59 36732240 36732834 GAAATACTTGCGTTTCCTTGTC 59 NA Rattus norvegicus 81 Polr2i ENSRNOG00000050560 ENSRNOT00000073107 1 1 1 85 1 91042083 91042181 GCCAGGAATGTAATAACATGCT 59 91041805 91041823 CTGGTAATCGCAATTCCGG 59 NA Rattus norvegicus 81 Heg1 ENSRNOG00000001793 ENSRNOT00000002443 2 1 1 80 11 70276274 70276295 ACAATACTCAGGGATCTTTCAC 58 70271529 70276233 AGGTTCTAACCAGACTGCA 58 NA Rattus norvegicus 81 Pla2r1 ENSRNOG00000008129 ENSRNOT00000079261,ENSRNOT00000011003 3 2 2 80 3 46513057 46513721 TCAAATTCACTGGAGTAATGGG 59 46512998 46513017 CTCTGGCTATCCATTCTTCC 58 NA Rattus norvegicus 81 Mast3 ENSRNOG00000022753 ENSRNOT00000078108,ENSRNOT00000037756 2 2 2 80 16 20408217 20408354 GTTGTCAGTGATGAGATCATGTG 60 20408390 20408412 CAGAAGCCTAGTAATGAGATCCT 59 NA Rattus norvegicus 81 Cul2 ENSRNOG00000015292 ENSRNOT00000066805,ENSRNOT00000079607 1 2 2 80 17 56963235 56963254 TTGAGGAGCTACAGAGACAC 59 56962264 56963195 ATAGTGTTGGCATATGTTCCTG 59 NA Rattus norvegicus 81 Acot7 ENSRNOG00000010580 ENSRNOT00000000079,ENSRNOT00000014213 1 2 2 80 5 169400328 169406759 GTGCCTCCTATTGTGTATTTACG 60 169406799 169406817 CATGCGTTCTAGCTTCTGG 59 NA Rattus norvegicus 81 Vom1r95 ENSRNOG00000048956 ENSRNOT00000072082 2 1 1 60 4 121821951 121821969 TGTGCAGATTCCTGTAGCC 60 121821909 121821930 ATTATTGAGAACCAGCAGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Actr3 ENSRNOG00000003206 ENSRNOT00000084552,ENSRNOT00000004520 3 2 2 81 13 41720268 41722196 ATCATCCCATCATGTATTGCC 58 41720207 41720225 CATCCACGCCTTTCATCAC 59 NA Rattus norvegicus 81 Rn60_X_0654.1 ENSRNOG00000051187 ENSRNOT00000076870 3 1 1 60 X 64487449 64487471 GGAGAAATTCAGGAACTTCATCG 60 64487411 64487430 ATCTGATTTCACCAAGTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phpt1 ENSRNOG00000016723 ENSRNOT00000022495 2 1 1 80 3 2797297 2797809 TATGGCTATTCTATGGGTTACG 57 2797238 2797259 CTCATAATCAGGATACTTGGCT 58 NA Rattus norvegicus 81 Nfkb2 ENSRNOG00000019311 ENSRNOT00000026235 3 1 1 80 1 266058873 266058891 CATGGGTCTTCATGAGGGA 59 266058934 266059032 TCTTCTTTCACCTCTGTGCT 59 NA Rattus norvegicus 81 LOC100911988 ENSRNOG00000045903 ENSRNOT00000045739 3 1 1 60 8 18062667 18062686 ATGCTAGTGAACATCCAGAG 57 18062626 18062645 TCTGTGTAAGGCAATCTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562011 ENSRNOG00000061525 ENSRNOT00000049057 2 1 1 60 1 216942442 216942461 ATGCTACCCTCATATTGCAG 58 216942401 216942420 GGCAGAGGACAAATGAAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562011 ENSRNOG00000061525 ENSRNOT00000049057 3 1 1 60 1 216942442 216942462 CATGCTACCCTCATATTGCAG 59 216942402 216942422 GCAGAGGACAAATGAAGTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clpp ENSRNOG00000047052 ENSRNOT00000072001 3 1 1 172 9 10051841 10053375 ACATCAATAGCCCAGGTGG 60 10051687 10051705 GATTCTGGAATTGGGCAGC 59 NA Rattus norvegicus 81 Rn60_6_0926.2 ENSRNOG00000051280 ENSRNOT00000072892 2 1 1 60 6 82908696 82908714 GCCACCAGTCGAATTTACC 59 82908738 82908756 AGTTGTGGTCTAGTCCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC500846 ENSRNOG00000031425 ENSRNOT00000049063 3 1 1 80 7 69074079 69074100 ACAATGATATCCACTCCATAGC 58 69070641 69074039 GTTCTGCAGTATTGATCCGT 58 NA Rattus norvegicus 81 Tpbgl ENSRNOG00000017922 ENSRNOT00000024157 3 1 1 61 1 164589623 164589641 GCCTCTTACGTCTTCTTCG 58 164589580 164589599 AGCACCATGAGGAAGATGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnaseh2c ENSRNOG00000020700 ENSRNOT00000028097 2 1 1 81 1 220967082 220967100 GGAAGCTGAACTTCTCAGG 58 220967145 220967238 ATAAAGCGGTCAAAGTCCC 58 NA Rattus norvegicus 81 Apaf1 ENSRNOG00000008022 ENSRNOT00000010869 2 1 1 80 7 31710802 31717457 CTCTGTGATTCAGGTGTGG 58 31710740 31710761 CTGAAGTCCTTTACTGTTTCCT 58 NA Rattus norvegicus 81 Bet1 ENSRNOG00000011008 ENSRNOT00000014810 3 1 1 105 4 29083477 29085097 CTGTTAGCTGAAATGGATTCAC 58 29083393 29083412 ATAGCAATTTCGTTTGGCTC 57 NA Rattus norvegicus 81 Hoxb1 ENSRNOG00000008506 ENSRNOT00000011416 1 1 1 88 10 84214843 84214861 ATCTTGCTCGTCAGAACCC 60 84214912 84215367 ACACCTTTGCTGTCTTAGGT 59 NA Rattus norvegicus 81 Kansl1l ENSRNOG00000028149 ENSRNOT00000067589 2 1 1 80 9 73718262 73720100 GTGAAACAGCATTAGCAGGAG 60 73718202 73718221 AATTGCAGTGAGATCCTGGT 59 NA Rattus norvegicus 81 Prkar1b ENSRNOG00000028733 ENSRNOT00000031896 2 1 1 80 12 17688274 17693747 GCAAAGTCTCCATCTTAGAGTC 59 17693788 17693806 CTTCAAACTGCACAGGCTC 60 NA Rattus norvegicus 81 Olr1145 ENSRNOG00000050124 ENSRNOT00000051572 3 1 1 60 8 19386211 19386229 CTCTCACCTCCACATTCCA 59 19386169 19386189 GCAGATATCAGTGAAGGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000068545,ENSRNOT00000020160,ENSRNOT00000020204,ENSRNOT00000074146 3 4 7 134 17 57082608 57082626 CCTACTACTGCTTTGCCAC 58 57082724 57088177 TTCTTTAGCAGCTTCCCTG 58 NA Rattus norvegicus 81 Icmt ENSRNOG00000010953 ENSRNOT00000014625 2 1 1 84 5 169477781 169477799 CAGTCTGGAGTACACAGTG 57 169477847 169478538 AATCTGCTTCAGTTCTGGC 58 NA Rattus norvegicus 81 Clpb ENSRNOG00000019693 ENSRNOT00000079846,ENSRNOT00000026665 2 2 2 80 1 166762698 166781279 CACAATGAGAGTGTGGTACAG 59 166781319 166781339 CTTGTAGACACTGCTGAAGTC 59 NA Rattus norvegicus 81 Clpb ENSRNOG00000019693 ENSRNOT00000079846,ENSRNOT00000026665 3 2 2 80 1 166740075 166743093 CTAACAAGGATGCAGCTCTG 59 166762622 166762641 CTGCACCTTCTGATAACAGC 59 NA Rattus norvegicus 81 Abi3 ENSRNOG00000005575 ENSRNOT00000007897 2 1 1 80 10 83649414 83649433 GAATGCTGGATCTACAGGGT 59 83647936 83649371 GGTGCATGTTCACCATCTG 59 NA Rattus norvegicus 81 Sectm1a ENSRNOG00000036672 ENSRNOT00000054931 3 1 1 81 10 110266579 110266597 GGATATACTTGTGGCAGCT 57 110265596 110266534 TCCTCATTTGAAGGCTCTG 57 NA Rattus norvegicus 81 Fam84a ENSRNOG00000004084 ENSRNOT00000065531 1 1 2 81 6 39362126 39362618 GGGATGGGATCTCAGTTCC 59 39362063 39362081 TAGTTGAGGTGGGTGATGC 59 NA Rattus norvegicus 81 LOC499235 ENSRNOG00000031368 ENSRNOT00000045415 2 1 1 83 1 171997319 171997340 CACCAGAAATATACAGTGACAC 57 171996572 171997276 TTTCTTTATCCCTGTTCCGG 58 NA Rattus norvegicus 81 LOC685157 ENSRNOG00000047079 ENSRNOT00000065873 3 1 1 80 12 20276079 20276099 CTGAACAGAATCTGGCTATGG 59 20275724 20276040 ATCCTAATGAATTCCCAGTGTG 58 NA Rattus norvegicus 81 Kmt2a ENSRNOG00000015133 ENSRNOT00000020573 3 1 1 80 8 49141419 49143081 TCTTTGCTAAAGGGAACTTCTG 59 49141360 49141379 CACACTGCATCATCTTGCTC 60 NA Rattus norvegicus 81 Gcsam ENSRNOG00000022110 ENSRNOT00000043020 2 1 1 95 11 60175541 60177431 GCCTTGCAGATATTTCAAGG 57 60174574 60174593 TGTCGAGCTTTAAATGTGCT 58 NA Rattus norvegicus 81 LOC102556447 ENSRNOG00000036958 ENSRNOT00000055537 2 1 1 80 2 238437010 238437028 GGAGAGGGATTACCTCACG 59 238407378 238436966 AGCCTGTCAATCTGTTTGC 59 NA Rattus norvegicus 81 Fcgrt ENSRNOG00000020583 ENSRNOT00000027944 1 1 1 80 1 101094506 101094737 GGAGAACCAAATAAATGGGAC 57 101094446 101094467 GTGGGCAATGAAGAATTATCAG 58 NA Rattus norvegicus 81 Fcgrt ENSRNOG00000020583 ENSRNOT00000027944 2 1 1 80 1 101094506 101094739 CTGGAGAACCAAATAAATGGGAC 60 101094448 101094469 GGGCAATGAAGAATTATCAGGG 60 NA Rattus norvegicus 81 Csta ENSRNOG00000023953 ENSRNOT00000039075 3 1 1 89 11 67563986 67566792 CTTCATTAAGATGGATGTGGGA 58 67566840 67566860 CCAGTCAGTTTCAAATCACTG 58 NA Rattus norvegicus 81 Add1 ENSRNOG00000013039 ENSRNOT00000018073,ENSRNOT00000018340 3 2 2 80 14 81389594 81394494 TACAATCACATCACAACCAGAG 59 81389535 81389555 CACTTCACTGTAGAGAAGTCC 58 NA Rattus norvegicus 81 Iah1 ENSRNOG00000060853 ENSRNOT00000087180 3 1 1 80 6 43394769 43396059 CTACACTCAAAGATGAGAACCC 59 43396100 43396118 GGTACTGTACCATGTCCCT 58 NA Rattus norvegicus 81 Ctxn1 ENSRNOG00000001057 ENSRNOT00000001399 1 1 1 214 12 2534363 2534384 GAGTCCCAAGAAAGAGAAAGAG 59 2534962 2534980 AACAGAACCAACACCACGA 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr247 ENSRNOG00000048525 ENSRNOT00000049260 1 1 1 60 1 172284049 172284071 CAAATCCAACTACTCCATTGACC 60 172284087 172284109 TACTACCACCATGTAGAACACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tgfbr3l ENSRNOG00000050573 ENSRNOT00000075527 2 1 1 81 12 2543666 2544172 GTGTCTGCCTCAGGATGAG 60 2543603 2543621 CTGTGTCAACATGTGCAGG 60 NA DesignNoJunction Rattus norvegicus 81 Olr1165 ENSRNOG00000047835 ENSRNOT00000044463 2 1 1 60 8 20230454 20230474 GCCATTTGTCATCCTCTACAC 59 20230494 20230514 CCAAACATTTACACAGACGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC099384.2 ENSRNOG00000056621 ENSRNOT00000080099 1 1 1 174 14 10694137 10694155 ATGTGACTGCTTTGATGGC 59 10686343 10686361 GAGGAACTCCTGTGGAGAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Irf3 ENSRNOG00000043388 ENSRNOT00000027786 3 1 1 80 1 100994868 100994888 GACTTTGTACATCTGGACACC 59 100994927 100995099 TAATTCCAAGAGGTCTTCCTGG 60 NA Rattus norvegicus 81 Deaf1 ENSRNOG00000017960 ENSRNOT00000048817 3 1 1 80 1 214313322 214317084 CCTTTGCAGAAGTGACCAC 59 214313260 214313279 CATTTGCCACTGATGTTGTG 58 NA Rattus norvegicus 81 Adamts18 ENSRNOG00000011575 ENSRNOT00000015874 2 1 1 80 19 46062234 46062616 CAAAGCCAACGAGTATTATCC 57 46062174 46062192 GAAGAAAGCTCCAACTCCT 57 NA Rattus norvegicus 81 RGD1562431 ENSRNOG00000032306 ENSRNOT00000049479 1 1 1 88 9 76441031 76441049 TGTCCCTGCAGAAAGACAG 60 76441124 76441142 GTACCTGGAAGAGGGAGAG 58 NA DesignNoJunction Rattus norvegicus 81 Nxph3 ENSRNOG00000005185 ENSRNOT00000007133 3 1 1 122 10 83330079 83332682 TCTATCTGGTCATCTGCGG 59 83329975 83329995 ACTTAGGTGAAATGTGACCTC 58 NA Rattus norvegicus 81 Ywhaq ENSRNOG00000051650 ENSRNOT00000077786 3 1 1 81 6 43493114 43493133 CAGCTGATCAAGGACTATCG 58 43471403 43493073 ACTTATCCAACAATTCCAGGAC 59 NA Rattus norvegicus 81 LOC100911909 ENSRNOG00000050809 ENSRNOT00000045673 1 1 1 60 10 62365927 62365945 ATGTACCTCACCACTGTCC 59 62365885 62365903 GGGAATCCAGGTGAATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tlcd2 ENSRNOG00000037275 ENSRNOT00000056355 2 1 1 80 10 62304520 62305235 CCACCTAGTGGTAGTGAGC 59 62305273 62305297 AGAAGTAGAGATACCATAGAGAAGC 59 NA Rattus norvegicus 81 Fam13c ENSRNOG00000000275 ENSRNOT00000051491,ENSRNOT00000000756 1 2 2 80 20 19381961 19383287 GCAGTTTATGATGCCACGA 59 19381899 19381917 TTAGTGAGCTGCGTAATGG 58 NA Rattus norvegicus 81 Luc7l2 ENSRNOG00000006001 ENSRNOT00000008557 1 1 1 80 4 66308953 66308976 CAGTGATGATAGAGTATGCAAGAG 59 66309013 66322929 CCAAGATCCATTCTTGTTCCA 58 NA Rattus norvegicus 81 Luc7l2 ENSRNOG00000006001 ENSRNOT00000008557 3 1 1 80 4 66331648 66331669 TGTGGAAGAATCTCAGAAAGTC 58 66331709 66339657 TTCCGATAAACTTCCTCTGC 58 NA Rattus norvegicus 81 Rad51c ENSRNOG00000006661 ENSRNOT00000008846 1 1 1 80 10 74698604 74702357 ATTTCAGATCACACCTCAGG 57 74698543 74698564 CGGAAGTTCAAAGAACTTTCTG 58 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245,ENSRNOT00000076432,ENSRNOT00000076849 1 4 6 80 14 44526463 44526482 GGTCTCTGGTTGAAATCCGA 60 44526524 44526857 CAGAACAAGCAACACCTGTC 60 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245,ENSRNOT00000076914 3 3 6 148 14 44525064 44525084 TGTAGAGCTGAGTCTTCTTGG 59 44525619 44526411 TCTTGTAACGGAAGCCCAG 60 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000076173 2 1 6 60 14 44526227 44526247 CTCTACCACTGAGCTAAATCC 58 44526269 44526287 GCTTTGCTTTACCGTCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1332 ENSRNOG00000058207 ENSRNOT00000080493 3 1 1 89 8 43816101 43816120 CTATGTCTTTGCCTTGCTGG 59 43803762 43816050 CCCAGGAAGAAGTACATGGG 60 NA Rattus norvegicus 81 Batf2 ENSRNOG00000021018 ENSRNOT00000028527 1 1 1 87 1 221538210 221540485 AGACCTCGAGGAGTCTCAG 60 221540536 221540554 CTTACTGGTGTGCTTCTGC 59 NA DesignNoJunction Rattus norvegicus 81 Atp6v1b1 ENSRNOG00000013573 ENSRNOT00000018303 1 1 1 80 4 115432993 115433162 TGCCTAATGACGATATTACCCA 59 115433200 115433221 GCTGTCTGTCCACATAAATCTG 60 NA Rattus norvegicus 81 AABR07001512.1 ENSRNOG00000017412 ENSRNOT00000023387 2 1 1 80 1 48565512 48565550 AAGAGAAACGTTAGCAGATGG 59 48565452 48565471 GTCTTCACAAGGGCTTTCTC 59 NA Rattus norvegicus 81 Phox2a ENSRNOG00000019706 ENSRNOT00000026702 3 1 1 139 1 166894022 166894040 AGGCTTCCAATACAGTCCC 59 166894142 166896218 AGAACTTGTAGGGAACTGCC 60 NA Rattus norvegicus 81 Tas2r110 ENSRNOG00000050637 ENSRNOT00000040860 3 1 1 60 4 167130862 167130882 GACTGGATCAAGAGAAGAAGG 58 167130822 167130840 TAAGGGCCAAGGTAGTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igtp ENSRNOG00000027008 ENSRNOT00000077764 1 1 2 69 10 43633056 43637224 CCACAAATGATACGGAAGGT 58 43637256 43637274 TAAACAATGGCGGCTTGAG 59 NA DesignNoJunction Rattus norvegicus 81 Rbm41 ENSRNOG00000057622 ENSRNOT00000086785 2 1 1 80 X 111321710 111321728 GAAACAGAAGGTGAGAGGC 58 111320862 111321669 AGAGACACATTCTTCAATGGAG 58 NA Rattus norvegicus 81 AABR07058745.1 ENSRNOG00000050884 ENSRNOT00000071423 3 1 1 80 7 136070265 136070283 CAATGACTCCTGCTGTGAG 58 136070656 136073276 GATGAACCAACCGAATAATCAG 58 NA Rattus norvegicus 81 RGD1566307 ENSRNOG00000046683 ENSRNOT00000074352 2 1 1 80 1 73612422 73612442 CCTACTGTTCTTTGTCCTCAC 58 73612052 73612382 TTTGTCTGTACTCCTTTCCTG 58 NA Rattus norvegicus 81 Hdx ENSRNOG00000037799 ENSRNOT00000077587,ENSRNOT00000057378 1 2 2 80 X 82896316 82932975 AAAGAGCACTACAGGACCG 59 82896254 82896273 TGGTCATACCATTGTCCCAG 60 NA Rattus norvegicus 81 Tas2r116 ENSRNOG00000021366 ENSRNOT00000028970 3 1 1 60 4 167144176 167144194 CAGGCACAAGGATGAACAC 59 167144134 167144155 AGATGATCCACATGAATGAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Usp42 ENSRNOG00000001059 ENSRNOT00000001404 3 1 1 80 12 12871209 12871331 GTCTTCCTGGAAAGGTGAC 58 12871374 12871393 GGTTGGTAAGCTTGAAAGTC 57 NA Rattus norvegicus 81 Piezo2 ENSRNOG00000038784 ENSRNOT00000065693,ENSRNOT00000025556 3 2 2 80 18 58415750 58418512 CACTGCAGATCTTACTTGGAC 59 58415690 58415710 AATGAAGATGATGGTGAGGAC 58 NA Rattus norvegicus 81 Kpna2 ENSRNOG00000015329 ENSRNOT00000020795 3 1 1 80 10 95209569 95209587 GGAATGTCAGCTCATTCCC 58 95205795 95209528 CAGACCAATTTACAGTACCCTG 59 NA Rattus norvegicus 81 RGD1564162 ENSRNOG00000028386 ENSRNOT00000032257 2 1 1 80 20 13662878 13663262 TGTGATGTTTGGAGCTGGT 60 13663304 13663324 TTCCGTTTCAGATGCATAGTG 59 NA Rattus norvegicus 81 Synpo2 ENSRNOG00000014867 ENSRNOT00000019931 2 1 1 80 2 227302429 227411708 TGGCAAAGATTCGAAGTCAG 59 227302368 227302387 GGTTACCATTGATGGACACC 59 NA Rattus norvegicus 81 Slc26a11 ENSRNOG00000030537 ENSRNOT00000054987 1 1 1 80 10 108494804 108494824 AGTGACCACAGACAATAAGAC 58 108494962 108495044 CTAAGAGGAACAAAGAGATATCCTG 59 NA Rattus norvegicus 81 Pdap1 ENSRNOG00000000990 ENSRNOT00000001310 1 1 2 80 12 11247502 11247522 AGACGACTAAGAAGGTGACAC 60 11247559 11249140 GCTTCTCTATTTCTTCTCGTTCTC 59 NA Rattus norvegicus 81 Pdap1 ENSRNOG00000000990 ENSRNOT00000001310,ENSRNOT00000076383 2 2 2 60 12 11247467 11247487 GCTCATTGACATTGAGAACCC 60 11247506 11247527 CAGTTGTGTCACCTTCTTAGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem87a ENSRNOG00000008455 ENSRNOT00000067836 3 1 1 80 3 112135680 112138884 GCAAATAACCAGAGATTTGCC 58 112135620 112135639 TTCCTTCAACATTGGTTCCT 57 NA Rattus norvegicus 81 Mir6326 ENSRNOG00000046282 ENSRNOT00000072421 3 1 1 60 10 62299382 62299400 CCAAGAGTTGCTAGTGCCT 60 62299423 62299442 GGCTCCTAAATGCACTTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem80 ENSRNOG00000018061 ENSRNOT00000032904,ENSRNOT00000078754 2 2 2 88 1 214322171 214322839 TTCAAGGTGCTCTCGTCAG 60 214322891 214322909 ATCAGGAGTGTGGCTAGGA 60 NA Rattus norvegicus 81 Larp1 ENSRNOG00000031544 ENSRNOT00000036959 1 1 1 80 10 43481718 43481737 CTTCCCATCACCCTTATTGC 59 43481778 43485301 CTTAAGAGCCGCAAAGATGAG 60 NA Rattus norvegicus 81 Dpep2 ENSRNOG00000023303 ENSRNOT00000034722 3 1 1 80 19 37967150 37967168 TGGTGACCTTTGCTGTAGG 60 37965420 37967109 TGATGTGATCAAAGTGATCTGC 59 NA Rattus norvegicus 81 Krt7 ENSRNOG00000008057 ENSRNOT00000010660,ENSRNOT00000087481 2 2 3 82 7 143068231 143068986 AGACCAAGTTCGAGACACTC 60 143069030 143069049 CATCTCCGCAATCTCATTCC 59 NA Rattus norvegicus 81 Ntf4 ENSRNOG00000020783 ENSRNOT00000028194 3 1 1 91 1 101406342 101406363 GACTACCTGTATCCTACACAGG 59 101406415 101407022 TTTGCACACCTGTCAACAG 59 NA InUTR Rattus norvegicus 81 Zfp655 ENSRNOG00000060129 ENSRNOT00000084637 2 1 1 82 12 11132220 11142935 CACTGATGGATTTCCAATTTCC 58 11132159 11132180 TCTGAGTTTCCAGATCAAAGAC 58 NA Rattus norvegicus 81 Pcyt1b ENSRNOG00000012358 ENSRNOT00000016669 3 1 1 84 X 62797194 62797212 CTTTGTGGCTCACGATGAC 59 62797260 62802826 AACAAACATGCCTGCTTCC 59 NA Rattus norvegicus 81 Unk ENSRNOG00000006600 ENSRNOT00000009733 2 1 1 80 10 104601971 104601989 ATGCCTGTCCCTACTACCA 60 104602032 104602564 TTGGACATGGAGATGACCTG 60 NA Rattus norvegicus 81 RGD1562319 ENSRNOG00000039216 ENSRNOT00000060025 2 1 1 82 12 19563226 19565616 ACATGAGTAACATGGCCCT 59 19565662 19565680 TTGGTGGTAGAAGCCAGAG 59 NA Rattus norvegicus 81 Ssna1 ENSRNOG00000011093 ENSRNOT00000014993 1 1 1 96 3 2489577 2489958 ACCTCAAGATCCTGGAGAG 58 2489499 2489518 CTACTCTTCTGGTCTGAAGC 58 NA Rattus norvegicus 81 Sept10 ENSRNOG00000049507 ENSRNOT00000071663,ENSRNOT00000086030 1 2 2 80 20 28775068 28775086 TACTTCATTGCTCCGACAG 57 28772660 28775025 AATGTTCACCTTGTTGTCCA 58 NA Rattus norvegicus 81 Comp ENSRNOG00000048472 ENSRNOT00000083281,ENSRNOT00000072536 3 2 2 80 16 20800554 20800572 AGATGGAGCAGACGTACTG 59 20799309 20800510 AGGACTTGACAGCCTTGAG 59 NA Rattus norvegicus 81 Slc16a12 ENSRNOG00000021916 ENSRNOT00000030024 1 1 1 80 1 252982596 252982614 TTCCTCATGTCCATCCTCG 59 252980430 252982553 CTTCAGACACCTTCTGTCAG 58 NA Rattus norvegicus 81 Pkn3 ENSRNOG00000025892 ENSRNOT00000050528,ENSRNOT00000081787 2 2 3 80 3 8635073 8635309 TCAACCATCCACAAGTGTC 58 8635352 8635371 CTGTCACTTCAACTCTGGTC 58 NA Rattus norvegicus 81 Mri1 ENSRNOG00000026211 ENSRNOT00000003762 3 1 1 110 19 25365120 25365138 CCATCTCCTAGAGCAGACC 59 25363034 25365046 CGGATCACACCTAATGCTG 58 NA Rattus norvegicus 81 Zfp385d ENSRNOG00000014661 ENSRNOT00000038449 3 1 1 82 15 6233105 6233123 GAAGAGGCTGCTTTACTGC 59 6203762 6233061 GCTTAGTACCACTGTTGTGAG 59 NA Rattus norvegicus 81 Rn60_X_0641.1 ENSRNOG00000022607 ENSRNOT00000039583 3 1 1 60 X 64095024 64095043 GAAACCCAGTTCGGATTCTC 59 64094983 64095004 GATCTGTCTCTTTCTGAGAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr137 ENSRNOG00000021145 ENSRNOT00000028707 2 1 1 80 1 222195345 222195483 ATCTGACCAGGCAGATCTG 59 222195283 222195301 AATTCCCACACGAAGAGGA 59 NA Rattus norvegicus 81 Dusp10 ENSRNOG00000004003 ENSRNOT00000005400 1 1 1 88 13 104315435 104315453 AACTACAAGAGGCTGCCAG 60 104315503 104320100 TGAGCTTCCTCAATGAATTCG 59 NA Rattus norvegicus 81 Zpbp ENSRNOG00000027801 ENSRNOT00000039182 2 1 1 89 14 91491359 91491378 TAAGTCTGAATGCCATCGTG 58 91469015 91491310 TCAGTGTCTATAGATGCAACTG 58 NA Rattus norvegicus 81 Pggt1b ENSRNOG00000003541 ENSRNOT00000004723 1 1 1 80 18 40176550 40181190 CAGACAGTCATCCAGATGCT 60 40176489 40176511 CTTTACAAATTCCACTCTCCTCC 59 NA Rattus norvegicus 81 Bank1 ENSRNOG00000032247 ENSRNOT00000073875 2 1 2 80 2 241504482 241504500 GGGAGATCTCAACAGAGCA 59 241473835 241504439 GGTAGTCTTCAGGACCTTGG 60 NA Rattus norvegicus 81 Mmp1b ENSRNOG00000008881 ENSRNOT00000011884 3 1 1 80 8 5630641 5630661 ACCACTAACATTCGAAAGGGT 60 5630377 5630600 TAAAGGTCACCATGGTCTCC 59 NA Rattus norvegicus 81 Crygd ENSRNOG00000032219 ENSRNOT00000064562 3 1 2 83 9 71777991 71778009 CTACCCTGACTACCAGCAG 59 71764640 71777945 ATTCTGTGAGAGCTGGAGTG 60 NA Rattus norvegicus 81 Olr769 ENSRNOG00000050221 ENSRNOT00000073423 1 1 1 60 3 102826013 102826032 GGTAATGGCTTATGATCGCT 58 102825972 102825993 CATGATGGTGAAATAGTGGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr769 ENSRNOG00000050221 ENSRNOT00000073423 3 1 1 60 3 102826052 102826072 TTTCCCATTGCATTGTTGGAG 60 102826012 102826032 TAGCGATCATAAGCCATTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Reep3 ENSRNOG00000000645 ENSRNOT00000067920 2 1 1 81 20 22946445 22946464 GTGTTCGGAATGCTCTATCC 59 22946508 22969279 TCATCCAGCGGACATACTC 59 NA Rattus norvegicus 81 Olr778 ENSRNOG00000004993 ENSRNOT00000006622 3 1 1 60 3 103111132 103111155 TCATCATCTCCTATGTCTTTCTCC 60 103111095 103111114 GATGAACATCCTGAGGACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncr2 ENSRNOG00000042230 ENSRNOT00000065673 1 1 1 80 9 14649300 14649318 GTTAGCGCTTGGACTTGTC 59 14648092 14649258 CATTTATTCCCGACGTTCTGG 60 NA Rattus norvegicus 81 Olr1249 ENSRNOG00000055051 ENSRNOT00000083649 1 1 1 60 4 1641087 1641107 TTATGTACCTAAAGCCCTCCT 58 1641128 1641147 AAGACAGAAGACACTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mon1b ENSRNOG00000011552 ENSRNOT00000065508 2 1 1 132 19 45942586 45942938 TTTACCAGTCCTGAGCTAGAG 59 45943032 45943050 CAGCCACGTGGTAAATGAG 59 NA Rattus norvegicus 81 Zfpm2 ENSRNOG00000004109 ENSRNOT00000029419 2 1 1 81 7 79638108 79638127 GACAGCCATTCAGACAAACC 60 79638166 79738248 TCTGAAATACTTCTAGCTCTCCTG 60 NA Rattus norvegicus 81 Ufl1 ENSRNOG00000007831 ENSRNOT00000089522,ENSRNOT00000010421 3 2 2 80 5 39637495 39637515 TTGTCCCTGACATCTATTCCA 59 39636242 39637455 CGTCAAATTCTAGATAGCCGT 58 NA Rattus norvegicus 81 Ppp2r4 ENSRNOG00000018457 ENSRNOT00000024914 3 1 1 80 3 8993010 8993033 CTTTATCCTAACCCTGAATGAAGG 59 8993072 8997661 AGCTTCTCAATGGCCTCAG 60 NA Rattus norvegicus 81 Cenpl ENSRNOG00000038789 ENSRNOT00000076513 3 1 2 84 13 78889518 78889536 GCCAGGAGACAGAGTTCAG 60 78889582 78892492 GAGGATCGATATCTTCCTGCA 59 NA Rattus norvegicus 81 Slc1a5 ENSRNOG00000015948 ENSRNOT00000021455,ENSRNOT00000064332 1 2 2 80 1 78717587 78721058 TCTCCTGGATTATGTGGTACG 59 78721100 78721118 GGCGGATGTCTTTCATCTC 58 NA Rattus norvegicus 81 LOC100910164 ENSRNOG00000011225 ENSRNOT00000014916 1 1 1 80 18 38852923 38853268 TTTCACCAGTTCTACTGTTACC 58 38853306 38853327 GAAGTACATAATGCTTTCTGGC 58 NA Rattus norvegicus 81 Exd1 ENSRNOG00000025360 ENSRNOT00000038365 3 1 1 82 3 111336476 111338024 TCTGTTGGCTTCAGGTAGC 60 111336412 111336430 TCCATTGTTGAAAGCACGG 59 NA Rattus norvegicus 81 Yif1b ENSRNOG00000055286 ENSRNOT00000083176,ENSRNOT00000044145 2 2 2 80 1 88189585 88189699 CTACCTTCACCAGGACTGG 59 88189742 88189761 AGGTCTGGAGCATTGATGTC 60 NA Rattus norvegicus 81 Yif1b ENSRNOG00000055286 ENSRNOT00000083176,ENSRNOT00000044145 3 2 2 81 1 88189336 88189354 CCTATGTCCAACATGGCGA 60 88189395 88189502 AGCGGTCGATATTCTTATCTACC 60 NA Rattus norvegicus 81 Six3 ENSRNOG00000057031 ENSRNOT00000091510 1 1 2 60 6 8887108 8887129 CTCCCACTTCTTGTTGACCT 60 8887152 8887170 GCTACTCGCCAGAAGTAGG 60 NA DesignRelaxed Rattus norvegicus 81 Six3 ENSRNOG00000057031 ENSRNOT00000089174 1 1 2 173 6 8887152 8887170 CCTACTTCTGGCGAGTAGC 60 8887309 8887327 ACATGGACAACTCTTCCGG 60 NA DesignNoJunction Rattus norvegicus 81 LOC100911730 ENSRNOG00000046094 ENSRNOT00000072434 2 1 1 80 1 214448824 214448842 GTTGTCATGGTGACTGGAG 58 214448886 214449193 CAGGATGAAGTACAAGCGT 58 NA Rattus norvegicus 81 Siglec1 ENSRNOG00000021243 ENSRNOT00000028855,ENSRNOT00000091493 2 2 2 80 3 123622081 123622455 TGCTAAGGCTACTGTCGTG 60 123622019 123622039 GTCACGTTACAAGTTAGGCTG 59 NA Rattus norvegicus 81 Gjc2 ENSRNOG00000038328 ENSRNOT00000058362 3 1 1 92 10 45528763 45534526 ATTTCCAGCCTGGAGAAGG 59 45528689 45528707 TGATTGTGGATCTCCTCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr150 ENSRNOG00000017143 ENSRNOT00000023007 3 1 1 60 1 169386525 169386544 TACCACTATTCTCACACCCA 58 169386484 169386503 ACTTCGGAAAGAGATTCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dzip1 ENSRNOG00000010311 ENSRNOT00000038596 2 1 1 80 15 104147860 104147879 ATCATCACTCAGAAGCAGCA 60 104145939 104147382 TAAAGGAGTCCCTTTCATCTCG 60 NA Rattus norvegicus 81 Fuca1 ENSRNOG00000009325 ENSRNOT00000012455 1 1 1 80 5 154277347 154277365 AGTGTCCCGATTCGTACTG 59 154277408 154280423 CTACCACCTGATCCTTGACC 60 NA Rattus norvegicus 81 Inpp5b ENSRNOG00000048506 ENSRNOT00000067762 2 1 1 80 5 142777361 142777381 TTGTTCTCGAATGCAGTTCTC 59 142777423 142778604 AGCCACAAGATCACATCGT 59 NA Rattus norvegicus 81 St6galnac1 ENSRNOG00000000251 ENSRNOT00000042321 3 1 1 80 10 105714241 105714408 TCTCTGTGACAAGGTGAGC 59 105714179 105714203 CACGATGTATCATAGTAGTGATCAG 59 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000051634,ENSRNOT00000090937,ENSRNOT00000087524,ENSRNOT00000090936,ENSRNOT00000078531 1 5 8 82 20 1983427 1984092 GGTTGCCAGATTATACATCCG 59 1983365 1983383 AAGTTGATGGCCTTCACCT 59 NA DesignNoJunction Rattus norvegicus 81 Hnrnph2 ENSRNOG00000011661 ENSRNOT00000015518 3 1 1 146 X 105419330 105421353 GCCACATTGAAATTGCATTGAG 60 105421460 105421478 AAAGAAGCGCATCACTTCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC102551208 ENSRNOG00000018463 ENSRNOT00000024921 1 1 1 60 5 135997501 135997522 GTGTGAACAGATACACATTCGT 59 135997543 135997561 GCACACCAGTTTGTAACGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nup210l ENSRNOG00000055790 ENSRNOT00000087063 3 1 1 80 2 189562894 189567161 GAGCCTAGAGGTCTTCCAC 59 189567204 189567223 AGAGTTACGCTTGTTGTGAG 58 NA Rattus norvegicus 81 Ttyh3 ENSRNOG00000055583 ENSRNOT00000079866,ENSRNOT00000080774 3 2 2 106 12 16098096 16098434 CTACGACTGGTACAGGTGG 59 16098504 16098522 CCAAGATACCCTTGGAGCT 59 NA Rattus norvegicus 81 RGD1561958 ENSRNOG00000022411 ENSRNOT00000035274 1 1 1 80 X 83926648 83930521 ATTGCTCACAACCCAACTG 59 83930564 83930583 TAGACTTTGGGCAGAAACCT 59 NA Rattus norvegicus 81 LOC102552166 ENSRNOG00000049489 ENSRNOT00000074641 2 1 1 80 8 114193005 114193237 TTACATATGAATGGGCCAAGG 58 114192945 114192965 AAAGAAGTACCATCTTGGGAG 57 NA Rattus norvegicus 81 Lypd5 ENSRNOG00000019432 ENSRNOT00000026288 2 1 1 109 1 81212611 81212629 GGACTCACCCTGAAGACTG 59 81212702 81213082 CGAGAAGTTGCCAATGGTC 59 NA Rattus norvegicus 81 Traf2 ENSRNOG00000006238 ENSRNOT00000008253 1 1 1 80 3 2754358 2754376 CTACACTACGAGGTCTGCC 59 2753651 2754315 GTCCTGAAGCTTCTCCTGAG 60 NA Rattus norvegicus 81 Spink10 ENSRNOG00000043250 ENSRNOT00000039466 2 1 1 96 18 57971020 57971849 TTTGTACTCCGAAACTGCC 58 57973341 57973360 CTCTTTGGTACACTTGTCGA 58 NA Rattus norvegicus 81 Tas2r123 ENSRNOG00000046088 ENSRNOT00000047402 3 1 1 60 4 167154476 167154496 CTAAGGTCTTCTTAATCGCCA 58 167154436 167154455 ATGAAGAGTGAGTTGATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mfsd3 ENSRNOG00000015685 ENSRNOT00000021208 3 1 1 82 7 117765324 117765412 CACAGTCATGAGAGGAGCA 59 117765457 117765476 CAGTGAATGTGGCAGTAGTG 59 NA Rattus norvegicus 81 Amot ENSRNOG00000007345 ENSRNOT00000090918,ENSRNOT00000049482 2 2 2 80 X 116758230 116758248 CCGCATCCAGAAAGAAGAG 58 116757425 116758187 TGGAGGGTCTTAATCCTTCC 59 NA Rattus norvegicus 81 Rint1 ENSRNOG00000022182 ENSRNOT00000035034 1 1 1 80 4 7874116 7874134 AGCGACATCTCACTTACCT 58 7870660 7872010 ACCTGAATCTCTTAAAGACCTG 58 NA Rattus norvegicus 81 Xxylt1 ENSRNOG00000001729 ENSRNOT00000002356 3 1 1 80 11 73227620 73227638 GCTCAGGGACCTACTACAG 59 73227682 73270511 TCCTCAGGATCTCTTTGGG 58 NA Rattus norvegicus 81 Mycbp2 ENSRNOG00000010479 ENSRNOT00000014583 1 1 1 80 15 93717348 93719449 ACATTAGCTAGGCACCACC 60 93717286 93717307 ACGCAGATATCTCATTTCATCC 59 NA Rattus norvegicus 81 Krt5 ENSRNOG00000050420 ENSRNOT00000080010 2 1 3 60 7 143316998 143317016 GAACCTGCAAATCGATCCC 59 143316956 143316974 CTTGATCTGCTCCCTCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zc3h12b ENSRNOG00000011508 ENSRNOT00000077012 3 1 3 84 X 65068708 65068727 AGGCCATAAAGACATCACTG 58 65068773 65071786 GTGGCATAAACCTGTAATCG 57 NA Rattus norvegicus 81 Uts2 ENSRNOG00000018393 ENSRNOT00000024798 3 1 1 81 5 168082344 168083906 AAGCTTGAGGAAGGCTCTC 59 168083948 168083969 CTTACGTTGTTTCCTGGTTCTC 60 NA Rattus norvegicus 81 Rasgrp4 ENSRNOG00000033744 ENSRNOT00000048677 2 1 1 80 1 88089027 88089167 CAGCTAGTGGAGAAGTCCG 60 88089210 88089229 CAGCTTCTCAAAGTCCTCCA 60 NA Rattus norvegicus 81 Rn60_13_0837.3 ENSRNOG00000061854 ENSRNOT00000088806 3 1 1 60 13 78725337 78725356 GCCTTCAACTAAGAGACCAG 58 78725378 78725397 CTGAGCAAGCACTCTTATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_12_0174.2 ENSRNOG00000026725 ENSRNOT00000029631 3 1 1 60 12 15206746 15206767 ATGGAAAGTTTCTCATCAACGG 59 15206788 15206806 TTAGCGGGATCTCATTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kctd21 ENSRNOG00000024793 ENSRNOT00000035743 1 1 1 87 1 162320890 162322289 ATCTGGGCAAACTGTTTCC 58 162322340 162322358 GAGGTTGTGTAGAGCTTGC 59 NA Rattus norvegicus 81 Izumo2 ENSRNOG00000045902 ENSRNOT00000070899,ENSRNOT00000073798 2 2 2 80 1 99447882 99447901 CAACTGGAAACAGTGGTGAC 59 99447944 99449095 CAGCAGAGGACCATCTGTC 60 NA Rattus norvegicus 81 Potea ENSRNOG00000056767 ENSRNOT00000088403,ENSRNOT00000079671 2 2 4 98 14 85876552 85879202 GAAAGTTCTCAGCTGTCGG 59 85879264 85879282 CTCAGACAGGAGACAGGTC 59 NA DesignNoJunction Rattus norvegicus 81 Potea ENSRNOG00000056767 ENSRNOT00000088403,ENSRNOT00000079671 3 2 4 98 14 85876553 85879203 AAAGTTCTCAGCTGTCGGA 59 85879265 85879283 TCTCAGACAGGAGACAGGT 59 NA DesignNoJunction Rattus norvegicus 81 Clasrp ENSRNOG00000046000 ENSRNOT00000081565,ENSRNOT00000075144 1 2 2 80 1 80505930 80506393 CTGTGAACATGATGCCCTG 59 80505868 80505887 GGATGTGGTCTAGATGTGCA 60 NA Rattus norvegicus 81 Olr1459 ENSRNOG00000050291 ENSRNOT00000052329 2 1 1 60 10 44789924 44789945 TTCTACTTGTTCCTCTCACCTG 60 44789966 44789984 CACAAAGCTTCCAGTTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Galk1 ENSRNOG00000006359 ENSRNOT00000008525 2 1 1 80 10 104560744 104560848 TCCCTCAGAGATGACTATGAG 58 104560684 104560702 GTAAACTCCAGGCACAGAG 58 NA Rattus norvegicus 81 Rgs19 ENSRNOG00000016547 ENSRNOT00000022451 2 1 1 107 3 177197530 177197638 CTGTGAAGTCTGCACTCCA 60 177197441 177197459 AGGAATGCCCGGAATACAC 60 NA Rattus norvegicus 81 AABR07058199.1 ENSRNOG00000054576 ENSRNOT00000084764 1 1 1 80 7 104475938 104476430 ACCTGATAAACATGCTGGAG 58 104475877 104475897 TCTTTCTCAGCTCATCTAGGA 58 NA Rattus norvegicus 81 LOC100912415 ENSRNOG00000048360 ENSRNOT00000071677 1 1 1 60 4 1752327 1752347 TTCATTGACCTCTGTTACTCC 58 1752287 1752305 TTGCCACAAAGTTCACCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rraga ENSRNOG00000007051 ENSRNOT00000009225 1 1 1 60 5 104941930 104941948 GGTGATTTCCCACTACCAG 58 104941972 104941990 GCTGATCTTCTCAAAGCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r42 ENSRNOG00000043159 ENSRNOT00000089015,ENSRNOT00000089091,ENSRNOT00000045611 3 3 3 80 1 149151523 149151543 GTGCAACAAGAAGATACATGG 58 149150751 149151483 TTTCAGGAAAGAGACCATCTG 58 NA Rattus norvegicus 81 Cd72 ENSRNOG00000017485 ENSRNOT00000060442 2 1 1 80 5 58945001 58945578 GTATTCCCTACAAGATTCTCTGC 59 58944943 58944966 CTCATCTGCTCAATCCAATATGAC 60 NA Rattus norvegicus 81 Cdx2 ENSRNOG00000032759 ENSRNOT00000048188 2 1 1 81 12 9469716 9469931 TGTTTGGAGCTGAGGAGAG 59 9469976 9469994 ATCTTGGCTCAAGTGTTGC 59 NA InUTR Rattus norvegicus 81 Glb1l ENSRNOG00000019243 ENSRNOT00000026081 3 1 1 80 9 82402550 82402568 TCCCTTGGGACCTTTACCT 60 82402372 82402507 GACAGCAAATTCCCATCCAG 59 NA Rattus norvegicus 81 Cep68 ENSRNOG00000027282 ENSRNOT00000039523 2 1 1 83 14 104514881 104516167 TATGGGAAGCCAAATGGAG 57 104514816 104514835 ACGGTTATAGTTCCAAGGAC 57 NA Rattus norvegicus 81 Npas1 ENSRNOG00000015376 ENSRNOT00000020855 1 1 1 80 1 78425754 78426148 CTTGTGAGAGCAGAGTGAG 58 78425692 78425710 CGTGGACAAACTGATAGCA 58 NA Rattus norvegicus 81 Acd ENSRNOG00000038973 ENSRNOT00000059577 2 1 1 80 19 37666837 37666965 CTCAATAAATGCCTTGAGGAC 57 37666644 37666662 CTCATCCAGAAGCTGAGAC 57 NA Rattus norvegicus 81 Hnrnpa3 ENSRNOG00000052968 ENSRNOT00000078872 3 1 1 80 3 62485800 62485818 CAAGGTGGTGGATATGGTG 58 62485862 62486975 ACCATAGTTACCTCCACCA 57 NA Rattus norvegicus 81 Syndig1l ENSRNOG00000027645 ENSRNOT00000031650 3 1 1 91 6 108395969 108395989 CATCCATACTGTGTCCTATGG 58 108394650 108394668 CACTCTCAGTCGAGGTTCC 60 NA DesignNoJunction Rattus norvegicus 81 Lrrd1 ENSRNOG00000026196 ENSRNOT00000032529 3 1 1 83 4 27404950 27405545 CCTGTAAAGACCACTACTCCA 59 27404887 27404909 TGTGAATGATACCCTCTTCTCTG 60 NA Rattus norvegicus 81 Krba1 ENSRNOG00000007405 ENSRNOT00000043856 3 1 1 80 4 78042439 78042457 CTTCAGCAGCTCTGATGGA 60 78042501 78042609 GGAAGGTGGTCTTTCTGCT 60 NA Rattus norvegicus 81 Urgcp ENSRNOG00000012184 ENSRNOT00000076740,ENSRNOT00000016468 1 2 3 82 14 85967793 85967811 TTCAGACCTGGGAGAAGTG 59 85965401 85967748 CTCTCCATTCCAAATCTGCA 58 NA Rattus norvegicus 81 LOC679823 ENSRNOG00000028883 ENSRNOT00000052265 2 1 1 60 10 10876195 10876213 CAATCCCACTTCTGCAGTC 59 10876236 10876255 GTCCTTCAGTTCCTTCAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hinfp ENSRNOG00000009499 ENSRNOT00000012868 3 1 1 80 8 48631355 48631627 CATTGCGAGAGTGTCTTCG 59 48631293 48631311 AGCTTGGTATTCACAGCAC 58 NA Rattus norvegicus 81 Trim32 ENSRNOG00000010303 ENSRNOT00000013675 2 1 1 119 5 81431655 81439361 AGCAGGAATTTGACACTGG 58 81439444 81439462 ATCCAGGTTCAGGTGAGAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mrpl28 ENSRNOG00000042720 ENSRNOT00000027662 1 1 1 80 10 15495959 15496714 CAACAACGACAAGCTCTCC 59 15496755 15496776 AAGATTTCACTGTAAAGCTCCC 59 NA Rattus norvegicus 81 Cwc25 ENSRNOG00000004091 ENSRNOT00000005426 1 1 1 80 10 85691757 85692224 TGGATATGGCTTACAGGTGAG 59 85691697 85691718 TTCTTTACTGCCCTTTGTTCAC 60 NA Rattus norvegicus 81 Erich4 ENSRNOG00000037798 ENSRNOT00000031326 2 1 1 103 1 82409463 82409481 AGGCCCTTATGTCTTCAGG 59 82408574 82408592 CAACAGCTGAACATCCACG 60 NA DesignNoJunction Rattus norvegicus 81 Pbld1 ENSRNOG00000000386 ENSRNOT00000000434 2 1 1 80 20 27111469 27111488 GGATTGTCCTGGACTTTCCT 60 27106797 27111311 CTATGGCTGCCTTTATCAAGTC 59 NA Rattus norvegicus 81 AABR07053379.1 ENSRNOG00000047116 ENSRNOT00000073004 1 1 1 60 3 103597487 103597508 CACTCAGATGTTCTTCATTCAC 58 103597528 103597547 CATGACTATGAGCAACACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd52 ENSRNOG00000015403 ENSRNOT00000020688 1 1 1 186 5 152323317 152324362 TGGTCCAGATACAAACAGGAG 60 152323151 152323169 ACATCGGTGATGGATGAGG 59 NA Rattus norvegicus 81 Ei24 ENSRNOG00000030391 ENSRNOT00000046590 3 1 1 80 8 39257200 39257476 CCTCCTACATTATCAGTGGCT 59 39257140 39257160 CAGGAGTCTTTGCTTCATTGG 60 NA Rattus norvegicus 81 Tefm ENSRNOG00000004000 ENSRNOT00000090278,ENSRNOT00000005325 1 2 2 83 10 67476597 67477097 TGGAAGAGATTTCTTCAGTCG 58 67476534 67476554 TGTTCTGAATGGAAAGTCCTG 58 NA Rattus norvegicus 81 Fam89b ENSRNOG00000024239 ENSRNOT00000016987 2 1 1 83 1 221086668 221087051 CAAGGAAATGGTGGGTCTG 59 221086603 221086622 TTGTAGTCCTGGATCGACTC 59 NA Rattus norvegicus 81 Sec11c ENSRNOG00000017036 ENSRNOT00000022958 2 1 1 80 18 61498495 61498514 TTCTGCGCTCATGATATGGA 59 61498556 61501572 ATACTGCCACTCAGTACCAC 59 NA Rattus norvegicus 81 Tmcc3 ENSRNOG00000007713 ENSRNOT00000080291,ENSRNOT00000010316 2 2 2 80 7 35532160 35535148 AGGTACAGGTATGAGCGAC 59 35535192 35535210 CTGCTTCAGGTTAGCTGTC 58 NA Rattus norvegicus 81 LOC100909752 ENSRNOG00000060381 ENSRNOT00000088385 1 1 1 80 5 62936318 62938751 GGATCCAGAAACTTGGTCAC 59 62938793 62938812 GAACGTCCCTTCTATGACCA 59 NA Rattus norvegicus 81 Fry ENSRNOG00000000894 ENSRNOT00000075920,ENSRNOT00000041365 1 2 4 80 12 5733706 5748256 AGTTCGACCAGGTCATCAG 59 5733644 5733662 ACCAGTCAAACAGTGTTCG 58 NA Rattus norvegicus 81 RGD1305733 ENSRNOG00000003198 ENSRNOT00000004346 3 1 1 80 10 3471116 3541687 AGAACTCAGGTTCATGATGGA 59 3541728 3541747 GCTACCAAGTTCTGAAGCTC 59 NA Rattus norvegicus 81 Rps14 ENSRNOG00000018774 ENSRNOT00000059501 3 1 1 82 18 56044506 56045236 TCTTTCTGGCAAGGAAACCA 60 56045281 56045299 CTGCATACGGAGAGGACTC 59 NA Rattus norvegicus 81 Cep78 ENSRNOG00000014041 ENSRNOT00000018951 2 1 1 80 1 233198739 233198758 GAACGTGCAAGAAGAAACAG 58 233197261 233198364 AGGGAAATCTGATTGCTGC 58 NA Rattus norvegicus 81 Xkr6 ENSRNOG00000011634 ENSRNOT00000015540 3 1 1 85 15 46946358 47143230 GTGTGGAGGTATATCCGCA 59 47143278 47143297 ATCATAGCCCAGTAGAAGCG 60 NA Rattus norvegicus 81 Lamtor3 ENSRNOG00000010552 ENSRNOT00000014027 1 1 1 80 2 243170085 243170105 GGTTCAATTCAATCGTTTGCC 59 243170144 243172275 TCTAGGCTGACAATTAGTCCTG 59 NA Rattus norvegicus 81 Sepn1 ENSRNOG00000017078 ENSRNOT00000022921 3 1 1 81 5 152755126 152755145 CGGCCATATCATCTTATCCA 57 152753551 152755082 CACATTCAGAGACCTGTGG 58 NA Rattus norvegicus 81 Itga6 ENSRNOG00000001518 ENSRNOT00000002075 1 1 1 80 3 58479606 58479626 GCGGCTACTTTCACTAAAGAC 59 58479667 58481950 TACACGAACGATCCCTTTCC 60 NA Rattus norvegicus 81 Atad3a ENSRNOG00000018118 ENSRNOT00000045053 1 1 1 80 5 173205866 173205884 GAGGCACTGAATCTTGCAC 59 173204746 173205824 GGCAGCTTCATATTCCTTGAG 59 NA Rattus norvegicus 81 Prdm12 ENSRNOG00000009218 ENSRNOT00000012234 1 1 1 83 3 10193010 10194384 TGTGGGAGGTATTCAACGAG 60 10192946 10192964 TGTAGGTCATCCAGCTTCG 59 NA Rattus norvegicus 81 Rn60_13_0836.1 ENSRNOG00000051271 ENSRNOT00000076141 1 1 1 80 13 78619990 78620205 CTGTCTGAGAACTCATTTGGTG 59 78620246 78620264 CTCCAGGAAATGCTTCCCA 60 NA Rattus norvegicus 81 Gpr179 ENSRNOG00000029245 ENSRNOT00000014863 1 1 2 80 10 85287176 85287196 CAAGGAGAGGTCCACTGAG 59 85287114 85287134 CTTGAAGCCTTGAGATGTCAG 59 NA Rattus norvegicus 81 Actn2 ENSRNOG00000017833 ENSRNOT00000024098 1 1 1 80 17 66344225 66397340 AGAGGAAGACTTTCACTGC 57 66344163 66344184 TGAAATCCTCCTCTATGTTCTC 57 NA Rattus norvegicus 81 Gpbp1l1 ENSRNOG00000037595 ENSRNOT00000076094,ENSRNOT00000012263 2 2 2 80 5 135413326 135415566 TCAGCTAAGTCATCTACAGCC 59 135415605 135415626 ACGGCTTATTCCAAATCTACCT 60 NA Rattus norvegicus 81 Umps ENSRNOG00000001797 ENSRNOT00000002450 3 1 1 80 11 70037693 70037713 AGCAACAGTTATCTGTTCAGC 59 70037753 70039396 AGGCGCTTAGTACCATAATCC 60 NA Rattus norvegicus 81 RT1-P2-ps1 ENSRNOG00000053315 ENSRNOT00000078926 3 1 1 60 20 2542934 2542953 ACATCGCCATAAACGAAGAC 59 2542893 2542912 TCTATCTGTGCTGCAGTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdhb ENSRNOG00000007895 ENSRNOT00000083212,ENSRNOT00000010545 1 2 2 80 15 18543723 18544075 CGTGATGATAATCCAGTGGTG 59 18544117 18544135 TGATTGAGCTTCTGTGGGA 59 NA Rattus norvegicus 81 Akap11 ENSRNOG00000009987 ENSRNOT00000058148,ENSRNOT00000079978,ENSRNOT00000013333 3 3 3 85 15 60732497 60733220 ATCAGACAGTGATGGACCG 59 60728663 60728682 TCAGCAGAGTCTTTCCACTC 60 NA Rattus norvegicus 81 Tnrc6a ENSRNOG00000024737 ENSRNOT00000086492,ENSRNOT00000017885 1 2 2 80 1 193132789 193132808 ACCTCTCAGTTCATCTCAGC 59 193132850 193133490 AGCAATGAAACTGGAACCTG 59 NA Rattus norvegicus 81 Tas2r106 ENSRNOG00000031185 ENSRNOT00000044029 1 1 1 60 4 165787440 165787459 TTCTCCACATATGGTTGCCT 59 165787399 165787422 GATTATCCACAGGTAAGAAATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rtp1 ENSRNOG00000021992 ENSRNOT00000032383 1 1 1 80 11 80826220 80826238 CTGGAACTTCATGCCTCAG 58 80824466 80824485 GAAGAGGATAACTACGTGGG 57 NA DesignNoJunction Rattus norvegicus 81 Rtp1 ENSRNOG00000021992 ENSRNOT00000032383 2 1 1 80 11 80826219 80826237 TGGAACTTCATGCCTCAGG 60 80824465 80824485 GGAAGAGGATAACTACGTGGG 60 NA DesignNoJunction Rattus norvegicus 81 Vom1r84 ENSRNOG00000059448 ENSRNOT00000082459 3 1 1 60 4 88207835 88207854 GTGTTCATGTACTGGGTGGA 60 88207873 88207895 CATATCTCCATAACAGGATCGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ift80 ENSRNOG00000009808 ENSRNOT00000091140,ENSRNOT00000013216 2 2 2 80 2 165581814 165584191 GGACTGCATTAGTTACAGTTGG 59 165581755 165581778 GAGCTAAAGTTGATCTAAGCATCC 60 NA Rattus norvegicus 81 Yars ENSRNOG00000007213 ENSRNOT00000010674 3 1 1 80 5 147392931 147394230 GAGCTCATCAGAAGAGGAGTC 60 147394272 147394290 CAGAAGGCCTTCTTCAGCT 60 NA Rattus norvegicus 81 Zfp641 ENSRNOG00000032447 ENSRNOT00000045473 1 1 1 123 7 139905236 139905254 CTGTCCCTTCAGGAGAAGG 59 139903289 139904492 TAGTTACTAGGCCCTGGGA 59 NA Rattus norvegicus 81 LOC690206 ENSRNOG00000013566 ENSRNOT00000018127 2 1 1 124 5 155794287 155796644 AGAGAAAGGGTAGCCAACC 59 155796732 155796750 GGATGTGTTGTTGGGTTGG 59 NA InUTR Rattus norvegicus 81 AABR07000261.1 ENSRNOG00000043188 ENSRNOT00000056227 2 1 1 80 1 7305879 7305897 ACAGCAACAGCAACAACAG 60 7305941 7313094 CTCTGTTGCTGTTGTTGCT 59 NA DesignNoJunction Rattus norvegicus 81 LOC500148 ENSRNOG00000038471 ENSRNOT00000009001 3 1 1 82 4 88676060 88684036 AATTTCAGGGAGGAAGCCA 59 88675996 88676014 CCAGACTCAAGCTCATCCT 59 NA InUTR Rattus norvegicus 81 Xab2 ENSRNOG00000000988 ENSRNOT00000001309 1 1 1 80 12 2160173 2161388 GCTTCAAGGCATATGAGCG 60 2160111 2160130 ATTTGGTCAGGTAGGTGCTC 60 NA Rattus norvegicus 81 Xab2 ENSRNOG00000000988 ENSRNOT00000001309 3 1 1 80 12 2161644 2161662 ACCGTGTATACAAGTCGCT 59 2161485 2161601 CCTTGGTTGACTGGAAAGTG 59 NA Rattus norvegicus 81 LOC100363368 ENSRNOG00000024504 ENSRNOT00000036754 2 1 1 86 15 18921963 18921986 GGAGTGGTGACTCTTCTAATAGAG 60 18922030 18923249 CTGGGAGGCCTTAATGAGAG 60 NA Rattus norvegicus 81 AABR07061044.1 ENSRNOG00000046592 ENSRNOT00000074206 1 1 1 60 4 103115475 103115493 CCTGCTTATCAGCATTGGA 58 103115433 103115451 TACCAGGCTCTGACTAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hrg ENSRNOG00000001809 ENSRNOT00000081864,ENSRNOT00000090031,ENSRNOT00000047595 2 3 3 80 11 81625125 81625149 GAACCAGCTACTTCATAGAATTCTC 60 81623498 81625087 ACAATCCAAAGACCGGAGG 60 NA Rattus norvegicus 81 Otoa ENSRNOG00000017487 ENSRNOT00000023591 2 1 1 80 1 191089301 191089929 TCAGAATTCAGGGCAGTGG 60 191089970 191089991 TGCTTTCTTCTTAAATCCAGCC 59 NA Rattus norvegicus 81 Fn3k ENSRNOG00000036659 ENSRNOT00000054915 1 1 1 82 10 110640898 110640916 CCAAGCTCAGTTGGATCTC 58 110640962 110641892 GGATCTTCACCTGTAGCCT 59 NA Rattus norvegicus 81 Lcn11 ENSRNOG00000047732 ENSRNOT00000084196,ENSRNOT00000050294 3 2 2 80 3 2937583 2937836 ACTTGCACAGAGAAGATGG 58 2937521 2937539 CAAACGTATAGCGTCCAGG 58 NA Rattus norvegicus 81 Ndufc2 ENSRNOG00000012383 ENSRNOT00000016509 3 1 1 105 1 162370029 162375107 GTGATGAAAGCAGGTTTGCA 60 162375175 162375193 GGTCCCTCACAGCATACAG 60 NA Rattus norvegicus 81 Fam49a ENSRNOG00000052758 ENSRNOT00000082616 2 1 1 80 6 37658351 37658370 CTGCATAAAGGTGCTGAAGG 59 37658411 37660957 AAGTGCTTTGTAGTGAACCTG 59 NA Rattus norvegicus 81 Fam49a ENSRNOG00000052758 ENSRNOT00000082616 3 1 1 80 6 37648205 37648223 GCTTGGAATGCAGTCTGTC 59 37648265 37650427 CTGTAGTGCTTTCTCAAGACG 59 NA Rattus norvegicus 81 Smurf2 ENSRNOG00000014623 ENSRNOT00000019781 2 1 1 80 10 95029125 95029144 ATGAACTCAAACCAAATGGC 57 95026619 95029083 TCCAGTTTACGTAAAGCCTG 58 NA Rattus norvegicus 81 Sv2a ENSRNOG00000021182 ENSRNOT00000028760 3 1 1 80 2 198329717 198329736 CTGCTTCAGTCCAGAGTACC 60 198329777 198330338 AAACCGTAGTAGCTGAAGGAC 60 NA Rattus norvegicus 81 Rps6kl1 ENSRNOG00000005530 ENSRNOT00000007350 3 1 1 170 6 108966545 108973092 ATCATCAAGAAGGTGCAGGT 59 108966050 108966068 GAAGATGGAGTCCTCGCTC 60 NA Rattus norvegicus 81 Kif11 ENSRNOG00000056069 ENSRNOT00000079726 3 1 1 80 1 256072336 256076657 GATCGATTGATGAACTTGTGAC 58 256076696 256076716 TGTTTAAGATGGACACCACAC 59 NA Rattus norvegicus 81 Rcor2 ENSRNOG00000021183 ENSRNOT00000035491 1 1 1 80 15 19605100 19605208 ACATTGAACAGGCACTTGG 59 19605250 19605270 GAGTGAAGTTGGCTAGATCAG 58 NA Rattus norvegicus 81 Pspn ENSRNOG00000049171 ENSRNOT00000071188 1 1 1 91 9 10044828 10044846 GATCTTCAAGAGGCTCCTG 57 10044901 10045007 TTGTTGTTACCCTGATGGG 57 NA Rattus norvegicus 81 Cd46 ENSRNOG00000007917 ENSRNOT00000057151 1 1 1 80 13 113817914 113817935 GGAAGAGCTACACTTTCTTCTC 59 113814152 113817877 CACAGGCATCAGATAAACTAGAC 59 NA Rattus norvegicus 81 Olr283 ENSRNOG00000030782 ENSRNOT00000043307 1 1 1 60 1 173442367 173442385 GTGCCTCTCATCTCACCTC 60 173442325 173442346 TGCAAATAGGTCATACTAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grm2 ENSRNOG00000013171 ENSRNOT00000017607 2 1 1 86 8 115347190 115348931 GATTATCGGGTGCAGACCA 60 115347122 115347140 CAACTTGGGTGCAAAGAGG 59 NA Rattus norvegicus 81 Tmed6 ENSRNOG00000020406 ENSRNOT00000027686 1 1 1 80 19 39266737 39266757 TTTCCTTATTGACACCTCCCA 59 39265923 39266698 AGACAAAGCTGATAGAAACCTG 59 NA Rattus norvegicus 81 Slc9a5 ENSRNOG00000028844 ENSRNOT00000068299 1 1 1 82 19 37321107 37323453 AAAGTCTCAGGAAGCCTCG 59 37323499 37323517 CAGGGTAGCTCTTTCTCCG 60 NA Rattus norvegicus 81 Klk1c9 ENSRNOG00000032857 ENSRNOT00000025831 2 1 5 83 1 100201190 100201208 TCGGCGAATACCTATGTGG 59 100201255 100202186 CCTGGTAATTGTCGGTTGC 59 NA Rattus norvegicus 81 Klk1c9 ENSRNOG00000032857 ENSRNOT00000025831 3 1 5 84 1 100201188 100201207 CTTCGGCGAATACCTATGTG 59 100201254 100202185 CTGGTAATTGTCGGTTGCG 60 NA Rattus norvegicus 81 Nt5c1a ENSRNOG00000015283 ENSRNOT00000020524 2 1 1 80 5 140896004 140896392 CCTTTGTAAAGGCCCTGGA 60 140896432 140896454 GGACGATGTCAAAGATATCTTCG 60 NA Rattus norvegicus 81 Plekhm2 ENSRNOG00000012163 ENSRNOT00000016333 3 1 1 80 5 160185275 160185293 TCCACTATAAGGCCAGCAC 59 160184964 160185231 AGAGGATCCCATTGCTGAG 59 NA Rattus norvegicus 81 Rgag4 ENSRNOG00000045779 ENSRNOT00000073685 3 1 1 60 X 71960077 71960095 AGAGGCCAGACATAGAACC 59 71960035 71960053 TGCATCAGAAATTCAGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scarb2 ENSRNOG00000002225 ENSRNOT00000003052 2 1 1 80 14 17098947 17100996 TCCTCTGTTGACTGTTGTG 57 17101040 17101058 TGCTGATAAGCTTTCAGCA 58 NA Rattus norvegicus 81 Mmp23 ENSRNOG00000017477 ENSRNOT00000066880 3 1 1 80 5 173080431 173080450 AATGTGGAGTGATGTTTCCC 58 173080301 173080391 GGGTAGAAACCTATCTTGAGGT 59 NA Rattus norvegicus 81 Arhgef37 ENSRNOG00000025502 ENSRNOT00000032189,ENSRNOT00000087188 1 2 2 80 18 56840132 56840151 TCTTTCCAAGAAGACCACCA 59 56839384 56840091 AATTCCTTGTCTTCTGTCCTG 58 NA Rattus norvegicus 81 Rps2-ps2 ENSRNOG00000060523 ENSRNOT00000084691 2 1 1 60 20 3134745 3134765 CTTTGATGCCATCTTCAAGAC 58 3134705 3134723 TCAATGTTCCAGAGGTCGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr535 ENSRNOG00000050080 ENSRNOT00000065152 1 1 1 60 3 74590267 74590290 CTCCAATGTATTTCTTCCTAACCC 59 74590230 74590250 ATGACAGTTGAGTAACAGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ell3 ENSRNOG00000022868 ENSRNOT00000036823 2 1 1 80 3 113402716 113402832 AGATTATCTCCTGCAATACAGC 58 113402657 113402676 GCATAGTCGGTCTCAAAGTC 59 NA Rattus norvegicus 81 Erc2 ENSRNOG00000015148 ENSRNOT00000081999,ENSRNOT00000020427,ENSRNOT00000047118 1 3 3 80 16 3671825 3674772 GAGAAAGAGTCTAGTTTAATCGACC 59 3674808 3674828 TAGTTTCGAGTCCCTCTTCAG 59 NA Rattus norvegicus 81 Rnls ENSRNOG00000020705 ENSRNOT00000028098 1 1 1 80 1 251902032 251902052 CAGTACATCACCAGTAATCCC 58 251864519 251901991 GCCACATTCTGATGACTCTG 59 NA Rattus norvegicus 81 Fam83h ENSRNOG00000030264 ENSRNOT00000082433,ENSRNOT00000048446 3 2 2 82 7 117066628 117066646 GTCTTTCAAGGGCCATCTG 59 117066374 117066585 ACCACATGAAGCTATAACTACC 58 NA Rattus norvegicus 81 AABR07015066.1 ENSRNOG00000046600 ENSRNOT00000072398 3 1 1 61 14 46588730 46588748 AGAGGGTGTAAATCTCGCG 60 46588773 46588791 CTGTTCACCTTGGAGACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc48 ENSRNOG00000021303 ENSRNOT00000032685 2 1 1 80 10 46746805 46752501 AACACCTGCTGAACTTAAACG 60 46752543 46752561 TCTCATTGCACTCCGTCAG 60 NA Rattus norvegicus 81 Lrrc48 ENSRNOG00000021303 ENSRNOT00000032685 3 1 1 80 10 46755332 46757032 AATGTCCAAAGTCTGATCGC 59 46757075 46757093 GGTGTTGATGGCAATCTCC 59 NA Rattus norvegicus 81 Olr271 ENSRNOG00000055938 ENSRNOT00000088537 1 1 1 60 1 172807570 172807590 CCATGTACTTCTTTCTCAGCC 59 172807611 172807630 GTGACAGAAGATGAGTAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Npas4 ENSRNOG00000020009 ENSRNOT00000027119 1 1 1 80 1 220263145 220263284 ACTACCCTATCAGTGACACG 59 220263084 220263102 CTAGGACATAGGCTGCCTG 59 NA Rattus norvegicus 81 Cnn1 ENSRNOG00000027736 ENSRNOT00000029577 2 1 1 80 8 23116822 23116842 ATTTATCAACAAGCTCCAGCC 59 23116884 23118069 CCTATGTTCTCCAGCTGGT 59 NA Rattus norvegicus 81 RGD1565655 ENSRNOG00000049317 ENSRNOT00000074350 1 1 1 60 1 81595368 81595386 GACCATTGAATCTGCACCT 58 81594288 81595346 ACCTATATCTACGAGCAGGAC 58 NA DesignNoJunction Rattus norvegicus 81 LOC100363642 ENSRNOG00000046832 ENSRNOT00000072047 2 1 1 60 X 73600810 73600828 CAAATGCTGAAGGACATGG 57 73600768 73600787 CTTGGCTTCTTAAATGTCGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1562229 ENSRNOG00000006356 ENSRNOT00000034584 3 1 1 91 14 114850328 114850346 AGTGACTTCCAGAAGCCAG 59 114835940 114850275 GAGGTAAGTGGAACTATCCCA 59 NA Rattus norvegicus 81 Ccdc127 ENSRNOG00000012775 ENSRNOT00000017779 3 1 1 97 1 31540241 31543447 AGCGTTTCGTTGGATTTGG 60 31540162 31540180 CAAGATCCTGCTGGAAAGC 59 NA Rattus norvegicus 81 Rxfp1 ENSRNOG00000024120 ENSRNOT00000033107 1 1 1 80 2 178433964 178433985 CTCAGTCACAACAGAATAACCT 58 178433818 178433926 GTCTTCAATTATCAGCCATTCC 58 NA Rattus norvegicus 81 Mfap5 ENSRNOG00000015505 ENSRNOT00000020812,ENSRNOT00000089614 2 2 2 80 4 155333365 155333386 GCTTGTACAAGACTGTACTCTG 59 155333427 155334229 CATGCGACGTAAACTGGTG 60 NA Rattus norvegicus 81 Rabgap1l ENSRNOG00000002736 ENSRNOT00000076999,ENSRNOT00000076272,ENSRNOT00000087506 1 3 4 80 13 78490577 78492397 AAGGCAACTTTAGTCCTGTG 58 78490516 78490537 TCACAACCTTCTTCTCTATTCC 58 NA Rattus norvegicus 81 Hoxa3 ENSRNOG00000006281 ENSRNOT00000008447 2 1 1 145 4 82140880 82140898 CAAGGCAGAACACTAAGCA 58 82139385 82139403 GAACTCCTTCTCCAGCTCC 60 NA DesignNoJunction Rattus norvegicus 81 Kin ENSRNOG00000026690 ENSRNOT00000039689 2 1 1 80 17 72206332 72206351 TCATCAAAGACAGCTGTTGC 59 72201611 72206292 AAGTCATTTCGGAATTCCTCTG 59 NA Rattus norvegicus 81 AABR07043701.1 ENSRNOG00000050237 ENSRNOT00000072022 3 1 1 80 19 36155323 36155342 TAGAGGTGGAGAACACTGAG 58 36153890 36155281 GACTGAGCAGGTTTCTAGAG 58 NA Rattus norvegicus 81 AABR07005844.1 ENSRNOG00000034038 ENSRNOT00000027919 3 1 1 80 1 203190913 203192423 TAAAGAAGCTCCGTTTCCC 58 203199395 203199413 GTCAGTAAACCTCCACAGG 58 NA Rattus norvegicus 81 Sh3pxd2a ENSRNOG00000020353 ENSRNOT00000082799,ENSRNOT00000027574 2 2 2 80 1 267049438 267049457 CCATTGCTGAATTCCAGTCC 59 267048494 267049397 AGTTCTTGTCGATGACCTCTG 60 NA Rattus norvegicus 81 Tmem201 ENSRNOG00000023152 ENSRNOT00000047763 2 1 1 80 5 166675481 166676158 CAAAGCACACTGTGGATACG 60 166675420 166675440 ACTCGTCCTCTTTCTTGATGG 60 NA Rattus norvegicus 81 Ifi30 ENSRNOG00000019387 ENSRNOT00000026225 1 1 1 81 16 20429360 20430174 TCAACGAGAAACCGTTGAC 58 20430306 20430324 ATGTCTGGCTTCTCTGTCC 59 NA Rattus norvegicus 81 LOC679683 ENSRNOG00000031585 ENSRNOT00000042949 1 1 1 60 3 117854149 117854170 GTCCATGTTACCGATCTTTCTG 59 117854191 117854209 CCTTCATTCCACCAGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016805.1 ENSRNOG00000028222 ENSRNOT00000037897 3 1 1 60 14 115116758 115116776 CGACACCAACTGTTACAGC 59 115116716 115116735 AGGACAGATGGAACTGTTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tfcp2 ENSRNOG00000032395 ENSRNOT00000037447,ENSRNOT00000087632 1 2 2 80 7 142158376 142161674 GATACTGGACATCGATATCCC 57 142158316 142158335 AACTCCACTGTGTTTAGCTG 58 NA Rattus norvegicus 81 Plg ENSRNOG00000017223 ENSRNOT00000023368,ENSRNOT00000080352 2 2 2 80 1 48558001 48558019 CGAGAACAGCAAGACTTCC 59 48553833 48557962 TTACACTCTGACAGATACACTCTC 60 NA Rattus norvegicus 81 Cdan1 ENSRNOG00000047427 ENSRNOT00000014664 1 1 1 80 3 112670621 112670639 TTTGCTGACCACATTGTCC 59 112670234 112670579 GACCAAACTCCGATGTAAGTG 59 NA Rattus norvegicus 81 Olr1433 ENSRNOG00000038413 ENSRNOT00000058503 3 1 1 80 10 44293689 44293754 ATCATCTACATGTACATGCAGC 59 44293792 44293813 GACAATGTTGTAGAAGAGGGTG 59 NA Rattus norvegicus 81 LOC683295 ENSRNOG00000009160 ENSRNOT00000039417 2 1 1 80 7 143273392 143273414 GAGAATTCAGGATGTACTGAAGG 59 143273050 143273355 GCTGATTTCATCGTCATACTGG 60 NA Rattus norvegicus 81 Chchd4 ENSRNOG00000022466 ENSRNOT00000038096 3 1 1 81 4 123112423 123112442 CCATGAAACTCCTAGCAGTG 58 123109955 123112380 ATTAGGCAGTATCAACCCGT 59 NA Rattus norvegicus 81 Anxa13 ENSRNOG00000007980 ENSRNOT00000064847 2 1 1 80 7 98239854 98247824 AAGGAATGGGAACGGATGAG 60 98239793 98239811 TCTGCTTTATCTGCTGCCT 59 NA Rattus norvegicus 81 Anxa13 ENSRNOG00000007980 ENSRNOT00000064847 3 1 1 80 7 98239854 98247823 AGGAATGGGAACGGATGAG 59 98239792 98239810 TTCTGCTTTATCTGCTGCC 58 NA Rattus norvegicus 81 Ubap2l ENSRNOG00000017990 ENSRNOT00000024364,ENSRNOT00000089042 1 2 2 80 2 189388150 189391391 GAAATCCAGACACGCATTCC 60 189388089 189388109 ATTCAGTTTGTCCACCATCCT 60 NA Rattus norvegicus 81 Etv5 ENSRNOG00000001785 ENSRNOT00000002445 1 1 1 80 11 82197645 82197793 TTATGGTCCCAGGGAAATCTC 59 82197834 82197853 CTGTGTCCACAAACTTCCTC 59 NA Rattus norvegicus 81 Olr1468 ENSRNOG00000052919 ENSRNOT00000026857 1 1 1 80 10 59973588 60126622 CTATGCCCTGTTCCTGTCC 60 59973526 59973546 TGGGAATCCAGTAGAATGAGG 59 NA Rattus norvegicus 81 Cxxc4 ENSRNOG00000045764 ENSRNOT00000072196 2 1 1 80 2 239415062 239415082 CTAATTAAAGGCAGACTGGCA 58 239415121 239417635 TATCCTCCAACTGTTACAACAG 58 NA InUTR Rattus norvegicus 81 LOC100360143 ENSRNOG00000049910 ENSRNOT00000073109 3 1 1 85 8 37557116 37557765 GCTTCCTACAAGCTCTGAC 58 37557811 37557832 AGCTTTACAGGTAGAGTATCCT 58 NA Rattus norvegicus 81 Wdr12 ENSRNOG00000017340 ENSRNOT00000023463 3 1 1 80 9 66860734 66860753 TAGCAGTTGATAGCTCTGGA 58 66858584 66859462 CTGTAGGGACTGTAGACCA 57 NA Rattus norvegicus 81 Dis3l ENSRNOG00000010537 ENSRNOT00000014071 3 1 1 80 8 69771678 69771699 CAAGATCATCTCTACCACAGCT 60 69771537 69771638 TGGACAGAAATCCTTACCGT 59 NA Rattus norvegicus 81 Olr832 ENSRNOG00000048539 ENSRNOT00000049091 1 1 1 60 4 148711529 148711548 TGTTTCATACAAGCCTTCGT 58 148711488 148711506 CAGCCATGAGAAGAGAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1561195 ENSRNOG00000030383 ENSRNOT00000046725 3 1 1 60 5 83647970 83647988 GGTGACCCAAGAATACACC 58 83647928 83647946 CTTCTTGAAGCCCACTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363064 ENSRNOG00000001027 ENSRNOT00000042857 1 1 1 80 12 2716573 2716591 CACATTGGAAGACCAGGGA 59 2716633 2716764 GTCAGATGTCCTTGCAAACTC 60 NA Rattus norvegicus 81 Dennd4b ENSRNOG00000022373 ENSRNOT00000049810 1 1 1 80 2 189639362 189639380 AGTCTTCGACGTTCCTCAG 59 189639420 189639619 GCTAGACATCAGAATTTCTAGGG 59 NA Rattus norvegicus 81 Dennd4b ENSRNOG00000022373 ENSRNOT00000049810 3 1 1 80 2 189635050 189635070 CTCACTGTCTTTATCACACCC 59 189635110 189635215 CCCATCATAACAGTACTGAGG 58 NA Rattus norvegicus 81 Cdk11b ENSRNOG00000017213 ENSRNOT00000023274,ENSRNOT00000050188 1 2 2 80 5 173076747 173076891 TCCTTGGTGCTAAGGAATACTC 60 173076930 173076950 GTTTCTGTGTCAGCAGTTCTC 60 NA Rattus norvegicus 81 Rsph9 ENSRNOG00000019474 ENSRNOT00000068747,ENSRNOT00000080816 2 2 2 81 9 17225332 17225353 CTTGTCGCAGATTACTACATCG 59 17225395 17227329 TGCAGTTCAGGCTGTAGAG 59 NA Rattus norvegicus 81 Il23a ENSRNOG00000003254 ENSRNOT00000004363 1 1 1 80 7 2711670 2711942 AACAGCCAGTTCTGTTTGC 59 2711608 2711626 CCCTGTGAAGATGTCCGAG 60 NA Rattus norvegicus 81 Olr788 ENSRNOG00000031865 ENSRNOT00000046162 3 1 1 60 3 103300688 103300708 ACACTCTTCAAGTGGTTTCTC 58 103300648 103300669 CACTACTAAGACATGAGCTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxo18 ENSRNOG00000018549 ENSRNOT00000025228 1 1 1 80 17 70423068 70423086 GATCATGTGCCCATTTGGT 59 70423128 70423829 AAGAACACCATTCAGCTTCTC 59 NA Rattus norvegicus 81 Eif4b ENSRNOG00000010103 ENSRNOT00000014033,ENSRNOT00000088871 3 2 2 80 7 143692858 143692970 ATGACCGAGGCTATGACTC 59 143693014 143693032 CTCTGTAGTCGTCATCCCT 58 NA Rattus norvegicus 81 Mapk1ip1l ENSRNOG00000011611 ENSRNOT00000063807 2 1 2 81 15 24090880 24090902 CTGAATAATCCTTACCAAGTGCC 60 24090943 24101147 GCTACTTCAGCAAAGCGTG 60 NA Rattus norvegicus 81 Adat1 ENSRNOG00000019434 ENSRNOT00000026309 2 1 1 80 19 44208839 44208860 CAAAGGAAGTTGTCTCAATGGG 60 44206531 44208798 CATTGAGGATGTCTCCGCT 60 NA Rattus norvegicus 81 Nap1l5 ENSRNOG00000007808 ENSRNOT00000010263 3 1 1 87 4 89150635 89150653 GAGGAAGAAGAGGAGGCTG 59 89150307 89150585 TCAGTCTCAAGTCTGTCAGC 60 NA InUTR Rattus norvegicus 81 Dlgap5 ENSRNOG00000010721 ENSRNOT00000015553 1 1 1 80 15 24188636 24189512 TGGACAAGATCATTTCTTCCCA 60 24188577 24188595 CGTTTGTCACACTGCTCTG 60 NA Rattus norvegicus 81 AC239701.1 ENSRNOG00000060437 ENSRNOT00000088616 2 1 1 60 Y 67340 67359 AACAGCCATTTCCAAAGCAG 60 67299 67320 GTAGGAGATGAAGTAAGAGGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pan2 ENSRNOG00000032441 ENSRNOT00000050792 3 1 1 80 7 2729813 2729831 TGAAGCGAAGTATTTGCCT 58 2729875 2730055 GGGTCTGAATTGTAGGCTG 58 NA Rattus norvegicus 81 RGD1562755 ENSRNOG00000028963 ENSRNOT00000051559 1 1 1 60 14 58878132 58878150 ACAGGCCGTAAAGAAACTC 58 58878172 58878192 AGGCTGTATCAGGGTATTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptger2 ENSRNOG00000050968 ENSRNOT00000075209 1 1 1 91 15 19339132 19339150 CTTCTATGGCGGAGGAGAC 59 19339203 19349300 AGCAAAGATTGTGAAAGGCAG 60 NA Rattus norvegicus 81 Krt8 ENSRNOG00000009779 ENSRNOT00000089279 2 1 2 60 7 143597034 143597053 CATAGCCGAGTAGTGACCAG 60 143596993 143597011 CCACAGATGGAGAGGTTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100360260 ENSRNOG00000011814 ENSRNOT00000044407,ENSRNOT00000015828 3 2 2 81 4 81255951 81256685 TCATGAAATGGAAGGACTCAG 58 81256728 81256746 GCGATGACAATCTGAGGAC 58 NA Rattus norvegicus 81 Cacna2d3 ENSRNOG00000031287 ENSRNOT00000048043 1 1 1 80 16 5119297 5124760 TAACCATTGAAGAAGGGCTC 58 5119091 5119110 GATCAGTGTTGCAGTAGGAC 58 NA Rattus norvegicus 81 Cacna2d3 ENSRNOG00000031287 ENSRNOT00000048043 2 1 1 80 16 5119297 5124759 AACCATTGAAGAAGGGCTC 58 5119090 5119109 AGATCAGTGTTGCAGTAGGA 59 NA Rattus norvegicus 81 Psmd11 ENSRNOG00000005538 ENSRNOT00000064285,ENSRNOT00000079156 2 2 2 82 10 67839752 67842227 GCAGTCAGGTATTATTCATGCA 59 67842270 67842288 CATAGCCTTCGAATGCCTC 59 NA Rattus norvegicus 81 LOC100363268 ENSRNOG00000029339 ENSRNOT00000042985 1 1 1 60 2 195940790 195940808 CCTTACAAGAATGCCGCTC 59 195940832 195940850 CATGTGCGCATTCTATCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Synpo2l ENSRNOG00000008949 ENSRNOT00000011956 1 1 1 80 15 4064798 4066022 ACAGGTATCTAAGATCCGAAGAC 59 4066061 4066080 CCGTTGATCGATAAGAGCTG 59 NA Rattus norvegicus 81 Slc52a2 ENSRNOG00000032561 ENSRNOT00000047380 1 1 1 87 7 117606905 117606923 TACCTGATGACACTGGCAG 59 117606974 117607097 GTACCCATGAAAGCACCAC 59 NA Rattus norvegicus 81 Stmn1 ENSRNOG00000016810 ENSRNOT00000076864,ENSRNOT00000076052,ENSRNOT00000076736,ENSRNOT00000022574 2 4 4 143 5 152682877 152683360 GGCATCTTCTGATATTCAGGTG 59 152683464 152683482 TCCTCCAGGGAAAGATCCT 59 NA Rattus norvegicus 81 Slc45a1 ENSRNOG00000018229 ENSRNOT00000024581 3 1 1 84 5 167672525 167673675 AGTAAGAAGTTTGCAGGGTC 58 167672460 167672478 GAAAGTACTGGCAGCTGAG 58 NA Rattus norvegicus 81 AABR07032255.2 ENSRNOG00000031591 ENSRNOT00000042496 3 1 1 82 18 56965598 56965617 TGGGTGATATTCCTGGAGTC 59 56965660 56965681 TTTCCTTCTGCCTTTGTACAG 59 NA Rattus norvegicus 81 Ttc5 ENSRNOG00000008850 ENSRNOT00000011741 1 1 1 80 15 27707896 27707914 CCACGTCATGGATAGTGTC 58 27705866 27707852 CCCAGGATATACCAGGAGC 59 NA Rattus norvegicus 81 Fam188a ENSRNOG00000016955 ENSRNOT00000022986 3 1 1 80 17 79729851 79740160 CCTATGACCCAGAAGATAATGGA 59 79729793 79729813 GATCTGAAACAAGGTCCAAGG 59 NA Rattus norvegicus 81 Tle6 ENSRNOG00000006350 ENSRNOT00000008360 2 1 1 80 7 10983846 10983864 TCAAGTCTCCCTCAGACCT 59 10983908 10984004 TTCCAGAAGACTCCTGGGT 60 NA Rattus norvegicus 81 Mapk4 ENSRNOG00000015401 ENSRNOT00000047271 3 1 1 85 18 69906558 69943112 CCCACAAGGGTTATCTGTC 58 69906491 69906509 TTTCGTGTAGTTGTTCGGG 58 NA Rattus norvegicus 81 Fgfbp3 ENSRNOG00000022796 ENSRNOT00000033780 1 1 1 80 1 255557035 255557054 ACAGACAGCCGTATAAAGCA 60 255556690 255556992 TCCTCGGATCGAATTCCAG 59 NA InUTR Rattus norvegicus 81 pramef20l ENSRNOG00000043130 ENSRNOT00000065599 3 1 1 82 14 15449737 15449758 ATTCAATTGTCTCCAGCATCTC 59 15449801 15450594 TCATCAGGCTCCTGAAGAC 59 NA Rattus norvegicus 81 Taar7c ENSRNOG00000047825 ENSRNOT00000050763 1 1 1 60 1 22507279 22507297 GACTCCATCATTGACGCCT 60 22507237 22507261 CTAGGATTTCATACATATACGTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Taar7c ENSRNOG00000047825 ENSRNOT00000050763 2 1 1 60 1 22508057 22508076 ACCTGAACAGATCCTGTGTC 60 22508016 22508034 GCATAGAGGATGAGGCGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem63a ENSRNOG00000003310 ENSRNOT00000004519,ENSRNOT00000083608 1 2 2 80 13 99234195 99234214 ATCTACCTCTTCCTCACCGT 60 99234257 99236331 CTGTCTCACCAGACTCTCC 59 NA Rattus norvegicus 81 Lrriq1 ENSRNOG00000004564 ENSRNOT00000071306 3 1 1 80 7 45175771 45175790 CAAGCGTGTATCTGTTCCTG 59 45172690 45175729 CTCAAATCAGCCTCATCTGG 59 NA Rattus norvegicus 81 Olr240 ENSRNOG00000030648 ENSRNOT00000049763 3 1 1 60 1 172100824 172100843 CAGTGGTCATTCCTATGCTC 58 172100865 172100884 TCCTTTACATCCCTGTTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ina ENSRNOG00000020248 ENSRNOT00000027417 1 1 1 80 1 266783903 266783921 CCAATGAATCCCTGGAGAG 57 266783965 266790180 CAATGCTATCCTGGTAGCC 58 NA Rattus norvegicus 81 Olr528 ENSRNOG00000061596 ENSRNOT00000013150 1 1 1 60 3 74475405 74475423 TCTCTGTGCTGTTTCTCCT 58 74475363 74475383 AGTATCATGCCTATGTTCCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ciz1 ENSRNOG00000013442 ENSRNOT00000064792,ENSRNOT00000037399 1 2 2 80 3 11406512 11406532 ACAGTAACTCAGAATTTCGGC 59 11406571 11406934 GGTTCTTGGCTTTGTATTTCTG 58 NA Rattus norvegicus 81 Fam162a ENSRNOG00000002255 ENSRNOT00000087054,ENSRNOT00000043230,ENSRNOT00000041844 3 3 3 80 11 67635526 67635545 GGAACACTGACTTGAAGAGG 58 67635588 67637691 GTCTGTAAGACTGGGTTGG 58 NA Rattus norvegicus 81 LOC100912022 ENSRNOG00000046099 ENSRNOT00000073972 2 1 1 60 4 1514095 1514116 TATGTATTGACTTCGATGGCCT 60 1514132 1514155 TATACATCAGTGGGTTACAGATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pigm ENSRNOG00000007735 ENSRNOT00000010551 2 1 1 60 13 90760463 90760482 CTCCTGCATACGTTCTAGAG 57 90760502 90760523 CCAGCTAACCAAATAAACAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wbp1l ENSRNOG00000020020 ENSRNOT00000027118,ENSRNOT00000080509 3 2 2 119 1 266401977 266409952 TGAACTCTGGTGGTTCTGG 59 266410035 266410053 TTGATTTCATGTTGCCGCT 59 NA Rattus norvegicus 81 AABR07055827.1 ENSRNOG00000059620 ENSRNOT00000091611 2 1 1 92 7 10629668 10629689 ATGACCTTGTCACCGAGAG 59 10629745 10629763 CTTCTTCACCCATCAGGCT 59 NA Rattus norvegicus 81 Megf9 ENSRNOG00000005932 ENSRNOT00000007812 1 1 1 80 5 86644983 86645003 GAATCACACTGTTGGTCTCTG 59 86618193 86644943 TTCCCAGAACTGTTACAGAGG 60 NA Rattus norvegicus 81 Snw1 ENSRNOG00000037998 ENSRNOT00000057807 3 1 1 80 6 111484491 111484595 AGACCAACAGATTTGTTCCTG 59 111484431 111484451 CAAACTGAACTGGTCCTTCTC 59 NA Rattus norvegicus 81 Capza3 ENSRNOG00000008727 ENSRNOT00000011555 3 1 1 60 4 174182210 174182229 TTGAAGACCACAGCTATGAC 58 174182249 174182270 ATCCACTTAGACTTCCAAAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr517 ENSRNOG00000032434 ENSRNOT00000046947 3 1 1 60 3 74058293 74058312 CCCAGTGAACAATGTGACAG 59 74058335 74058353 AGCATCATCAGTGAAGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnma1 ENSRNOG00000005985 ENSRNOT00000077671,ENSRNOT00000065542,ENSRNOT00000066928,ENSRNOT00000091318 3 4 4 80 15 841906 845867 AACATCATGAGAGTGATCTCC 57 845909 845927 CTTGTTGTGATACTGCAGC 57 NA Rattus norvegicus 81 Sesn3 ENSRNOG00000008173 ENSRNOT00000011008 3 1 1 80 8 12868346 12868364 GATGTTGACACTACCACGC 59 12868403 12869645 GTCATAGTCATCATACCTGATTCC 59 NA Rattus norvegicus 81 Kitlg ENSRNOG00000005386 ENSRNOT00000007231 1 1 3 88 7 42331550 42337817 GTCCTGAGAAAGGGAAAGC 58 42337869 42337887 TACAAGCGAAATGAGAGCC 58 NA Rattus norvegicus 81 AC096601.1 ENSRNOG00000024177 ENSRNOT00000056077 3 1 1 68 7 123088735 123088755 AAGTACGAGGCCAGTTCAG 59 123088685 123088703 CTTCTGAGCCCTTTAGCTC 58 NA DesignNoJunction Rattus norvegicus 81 Mir378b ENSRNOG00000048754 ENSRNOT00000072291 2 1 1 60 5 5575675 5575693 ACAGTGGACTTGGAGTCAG 59 5575633 5575651 CAGTGATAGTCCATGTCGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pmm1 ENSRNOG00000005358 ENSRNOT00000007164 1 1 1 82 7 123185158 123185176 AAGATCCGGGAGAAGTTCG 59 123184382 123185114 CTTATCATACCTCCTCGGGAG 59 NA Rattus norvegicus 81 Fam178b ENSRNOG00000023941 ENSRNOT00000037570 1 1 1 80 9 43204550 43204570 AACATCTTCGAGAGCATTTGG 59 43187573 43204509 AAACGCATGTCTTCATCAGG 59 NA Rattus norvegicus 81 Fam178b ENSRNOG00000023941 ENSRNOT00000037570 2 1 1 80 9 43204550 43204569 ACATCTTCGAGAGCATTTGG 58 43187572 43204508 CAAACGCATGTCTTCATCAG 58 NA Rattus norvegicus 81 LOC360919 ENSRNOG00000039504 ENSRNOT00000060548 3 1 1 80 14 19069024 19069045 GATCTCACTGGAAAGTGTAAGC 59 19062922 19068984 AAGGAAGGTAGCCATCAGTC 59 NA Rattus norvegicus 81 Sec14l5 ENSRNOG00000002917 ENSRNOT00000061253 3 1 1 85 10 10594737 10594755 ACAAGAACTGGATCCTGGG 59 10592972 10594688 ATGGGAACCCTGAATGCTC 60 NA Rattus norvegicus 81 LOC100909740 ENSRNOG00000047484 ENSRNOT00000072302 1 1 1 100 4 82193193 82194360 ATCGATCCCAATAACCCGG 59 82193111 82193129 TCTTTCTCCAGTTCCAGCG 60 NA Rattus norvegicus 81 Larp1b ENSRNOG00000038366 ENSRNOT00000090861 1 1 1 80 2 127863253 127865657 GTGATACACGAAGTTGGAGAC 59 127865699 127865717 TACCACCCTCACTTCTCAC 58 NA Rattus norvegicus 81 AABR07032657.1 ENSRNOG00000049921 ENSRNOT00000074465 1 1 1 80 18 76317241 76317295 TGACGTCATAAAGCGACGA 60 76317337 76317357 CTCTGGCATGTTTCATAGCTC 59 NA Rattus norvegicus 81 Olr516 ENSRNOG00000049954 ENSRNOT00000073426 2 1 1 60 3 74014017 74014038 TCCTCTTCATGTATGTAAGACC 57 74013978 74013999 GACACTATCATATCATGCTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcu ENSRNOG00000045920 ENSRNOT00000090771,ENSRNOT00000071477 2 2 2 80 20 29055376 29055394 GGTGTTTCTCCGACAACTG 59 29054297 29055332 GCAACTCGAACACCATCTG 59 NA Rattus norvegicus 81 AABR07065012.1 ENSRNOG00000032248 ENSRNOT00000047825 2 1 1 60 6 103948999 103949017 ATGCTTCGGATGAATTCCA 57 103948957 103948975 CCTCTATGGTCTCCTCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acsl3 ENSRNOG00000014718 ENSRNOT00000020161 3 1 1 80 9 84575081 84576935 ACTTCCAGCTTGTTACACTG 58 84576978 84576996 TGTTGGTCACCTCTGTCTC 59 NA Rattus norvegicus 81 Ptchd2 ENSRNOG00000026447 ENSRNOT00000036647 3 1 1 80 5 165073173 165081776 CAGTCTACTAGCAAAGTCCAG 58 165073113 165073131 GTCGTTATTGAAGGTCCGG 58 NA Rattus norvegicus 81 Flnb ENSRNOG00000009470 ENSRNOT00000088264,ENSRNOT00000066546 2 2 2 80 15 18882591 18882609 AAGCTGGAGAATGTGTCTG 58 18834530 18882549 GATGGCTTTACTGTCAATGGA 58 NA Rattus norvegicus 81 Rn60_X_0559.1 ENSRNOG00000051159 ENSRNOT00000076038 1 1 1 60 X 55635732 55635752 AACCTCTTGTAGGAGAAACAG 57 55635774 55635792 CCAAGCCAGCAATGATAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnmtl1 ENSRNOG00000037238 ENSRNOT00000056278 1 1 1 90 10 64401878 64404289 CTTACTCACCAAAGGCTGTG 59 64404342 64404360 ATTGTTCACAATGGGCACC 59 NA Rattus norvegicus 81 AABR07054721.1 ENSRNOG00000048632 ENSRNOT00000049457 1 1 1 60 3 167759250 167759270 GTAGTGACCTATGAGGATGTG 57 167759210 167759228 GATCCAACAAAGCCCACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lamb2 ENSRNOG00000047768 ENSRNOT00000072098,ENSRNOT00000083578 1 2 2 80 8 117269290 117269675 CCTTCAAGACATTTCGTCCT 58 117269718 117269736 AATATCGGTAGACACGCCA 59 NA Rattus norvegicus 81 Lamb2 ENSRNOG00000047768 ENSRNOT00000072098,ENSRNOT00000083578 3 2 2 80 8 117269289 117269675 ACCTTCAAGACATTTCGTCCT 60 117269717 117269735 ATATCGGTAGACACGCCAC 59 NA Rattus norvegicus 81 Kdm3a ENSRNOG00000007814 ENSRNOT00000045279,ENSRNOT00000077447 3 2 2 80 4 99528185 99528203 CCAAGACAGCAGAACACTC 59 99526341 99528142 CTGCTTGTGACATCCTTGAG 59 NA Rattus norvegicus 81 Fam53b ENSRNOG00000061348 ENSRNOT00000086830,ENSRNOT00000077956 3 2 2 93 1 204761788 204761806 AGAAGATCGGTGTGAAACG 58 204718390 204761731 AAGGTCTGACAGTTCTGTG 57 NA Rattus norvegicus 81 Fblim1 ENSRNOG00000011774 ENSRNOT00000089345,ENSRNOT00000045237 2 2 2 80 5 160139306 160139326 GGATCATCGCTCATTTCTGAC 59 160138778 160139264 CTTTGATGGAGCCTGTAGC 58 NA Rattus norvegicus 81 Daglb ENSRNOG00000001079 ENSRNOT00000067332,ENSRNOT00000001437 1 2 2 80 12 13154978 13154997 TGATCGTCCTCCTTGTTCTC 59 13148874 13154936 AAATGGTTCCTCTCATGCTG 58 NA Rattus norvegicus 81 Mogat1 ENSRNOG00000014692 ENSRNOT00000082378 1 1 2 80 9 84406563 84410996 GAGTAATGGGCCAGTTTCAG 59 84411038 84411057 ATGACTGAGATGTTCCCACC 60 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000017851,ENSRNOT00000079440,ENSRNOT00000083079,ENSRNOT00000092180,ENSRNOT00000082718,ENSRNOT00000090520 3 6 7 85 1 102915772 102920320 TTACTGAAGGGTCTGGCTG 59 102920369 102920387 CCATGCAGAAGATCCAGTG 58 NA Rattus norvegicus 81 Wdr44 ENSRNOG00000029068 ENSRNOT00000085185,ENSRNOT00000088661,ENSRNOT00000040742 2 3 3 80 X 120948051 120948071 TCTAGAAGAGAATGCCTTTGC 58 120948110 120952371 ATATCTGTCATCTCTTGGATGG 57 NA Rattus norvegicus 81 Slirp ENSRNOG00000012314 ENSRNOT00000016479 1 1 1 89 6 111476884 111476902 AAAGGACTAACTGCGTTGC 59 111476955 111480919 TCTTAGCTCACTCGATGCC 59 NA Rattus norvegicus 81 LOC690617 ENSRNOG00000039861 ENSRNOT00000061194 3 1 1 113 7 11216622 11216911 AGGAGTTCGTGGTCAACAG 60 11216987 11217006 GTTTGAAGTCCTGTGCAGTG 60 NA Rattus norvegicus 81 Ipmk ENSRNOG00000000609 ENSRNOT00000000748 3 1 1 80 20 18471929 18474754 ATACCATGGTTTACGCTGC 58 18471867 18471885 AGACGCCATAGTACTTGGG 59 NA Rattus norvegicus 81 Olr540 ENSRNOG00000048820 ENSRNOT00000048376 3 1 1 60 3 74669814 74669834 CTTTCATGTTCTGATGCACAC 58 74669774 74669794 CAATCACTCCAGAGAAGACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Supt7l ENSRNOG00000004927 ENSRNOT00000006543 2 1 1 81 6 26248003 26249530 ATGCTACAGATTAGTAAGCAGC 59 26249571 26249590 CAGGCTTAGTGTCTTCTGTG 58 NA Rattus norvegicus 81 AABR07035501.1 ENSRNOG00000049220 ENSRNOT00000072986 3 1 1 69 12 18227516 18227534 TCACTGTGGCTATTGGTGG 60 18222300 18222319 AATTCTGGAGTTCCCAAGGG 60 NA DesignNoJunction Rattus norvegicus 81 Abhd12b ENSRNOG00000026855 ENSRNOT00000036933 1 1 1 80 6 92586306 92596218 TGCTAAAGCTCTATGAAATCGC 59 92596259 92596277 GGTAGCCAGGAGGAAAGAC 60 NA Rattus norvegicus 81 Abhd12b ENSRNOG00000026855 ENSRNOT00000036933 3 1 1 80 6 92586248 92586267 GCCATTGTCTTAGAAGCTCC 59 92586307 92596219 TGCGATTTCATAGAGCTTTAGC 59 NA Rattus norvegicus 81 RGD1559588 ENSRNOG00000045868 ENSRNOT00000074970 2 1 1 80 12 19890774 19890793 AACAGAATCTGGCTATGGCT 59 19890834 19891149 GATATCCTGCTGAATTCCCAG 58 NA Rattus norvegicus 81 Ppp1r2 ENSRNOG00000001733 ENSRNOT00000002361 3 1 1 81 11 73022102 73022122 GCAACATATCATCCAGCTGAC 60 73022160 73025624 CACCTATCATATTGTGGTATGGAG 59 NA Rattus norvegicus 81 Olr219 ENSRNOG00000047623 ENSRNOT00000045360 2 1 1 60 1 170932820 170932842 GATTTCAGTGTTCTACTCAGCAG 60 170932782 170932802 TCTCAGGCTGTAAATAATGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tet3 ENSRNOG00000011387 ENSRNOT00000015296 1 1 1 80 4 115085464 115104281 TTGTGTCGAACAAATAGTGGAG 59 115085405 115085423 CGGATAGAGGCTACTGTGG 59 NA Rattus norvegicus 81 Mcemp1 ENSRNOG00000028259 ENSRNOT00000084431,ENSRNOT00000031653 3 2 2 81 12 2214015 2214037 GAGTATGAGAACATAGCCTTCAG 59 2214076 2215092 GCTTGAACTTGACTTGTTGTG 59 NA Rattus norvegicus 81 Mfsd12 ENSRNOG00000039858 ENSRNOT00000061191 2 1 1 80 7 11219227 11219745 CCAGCTTTCTATCAGGTAGG 57 11219166 11219186 ATACATGGCAATGTAGGTCTG 58 NA Rattus norvegicus 81 Olr522 ENSRNOG00000049234 ENSRNOT00000047747 1 1 1 60 3 74255442 74255461 GCTGGTGCTACTTTATTGCT 59 74255401 74255419 AGAGAACGGACACATAGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp512 ENSRNOG00000039815 ENSRNOT00000006658 3 1 1 80 6 26294873 26294893 CTGTGGGAAACCATACAAGTC 59 26293426 26294832 GACTCTGGGAAGAAGACAGG 60 NA Rattus norvegicus 81 Sar1a ENSRNOG00000000557 ENSRNOT00000079584 3 1 3 90 20 31273160 31273178 GTCACAGGAATCACTGGCT 60 31275566 31276866 AGGGTCCTTTGTAGCAATCTC 60 NA Rattus norvegicus 81 Fcna ENSRNOG00000017063 ENSRNOT00000023022 1 1 1 80 3 2853070 2853090 TTTCCAGTACTGCTCTGTCTC 60 2852811 2853032 ACCTACGATCTTAACATCTGGAC 60 NA Rattus norvegicus 81 Ier3 ENSRNOG00000000827 ENSRNOT00000080822 3 1 3 72 20 3439751 3439769 CCTCGAGTGGTGAGTATCG 59 3439697 3439718 TCTAGTTGTTCCCAAAGGTACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grsf1 ENSRNOG00000003392 ENSRNOT00000004551,ENSRNOT00000086571 2 2 2 80 14 21052110 21052130 GTGCACTTTGATACCCATGAG 59 21052167 21052715 CAGCTCAATATACCTATGTTGGAC 59 NA Rattus norvegicus 81 Cnga3 ENSRNOG00000051950 ENSRNOT00000089571,ENSRNOT00000081651 3 2 5 82 9 43821827 43821848 CGAGACAACTTTCAGTAAAGGA 59 43821891 43831187 ACATGGTGAGTGAGACCTG 59 NA Rattus norvegicus 81 Gmps ENSRNOG00000051151 ENSRNOT00000076976,ENSRNOT00000084238 3 2 3 91 2 154589425 154589444 GTCTGTGGTTATTCGAACCT 58 154589498 154590551 TTAGCACCACCTCTACAGG 58 NA Rattus norvegicus 81 Caskin2 ENSRNOG00000004310 ENSRNOT00000005942 3 1 1 81 10 104347468 104347561 GGATGACACCTGAGGATCTG 60 104347406 104347424 AGCTGAGCAATCTCTGAGG 59 NA Rattus norvegicus 81 Brox ENSRNOG00000052963 ENSRNOT00000078834 1 1 1 80 13 101680005 101680854 CAAGGATGACAGTATCAAACCC 59 101679946 101679970 GTGTCTTTCTGAGGTTTGATATCTG 60 NA Rattus norvegicus 81 Brox ENSRNOG00000052963 ENSRNOT00000078834 2 1 1 80 13 101680000 101680849 ATGACAGTATCAAACCCAAACC 59 101679941 101679959 ACCCAGTGTCTTTCTGAGG 59 NA Rattus norvegicus 81 Slc47a2 ENSRNOG00000038055 ENSRNOT00000057907 1 1 1 80 10 47593602 47593622 CATTGGTTACTACGGGTTTGG 59 47590365 47593560 GCCCAGAGGCCTATTATCC 59 NA Rattus norvegicus 81 Zbtb34 ENSRNOG00000032700 ENSRNOT00000051893 3 1 1 98 3 12454338 12467444 TGCAATTCAAGATTACGTCTCG 60 12454261 12454279 TAGTTGGCTCAGAACGGTG 60 NA Rattus norvegicus 81 LOC100362298 ENSRNOG00000030107 ENSRNOT00000048495 2 1 1 60 5 117509573 117509592 CCACGACAATACAAGATCCC 59 117509612 117509633 TCCTATCCTTTACGTCCTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itgb1bp2 ENSRNOG00000003596 ENSRNOT00000004888 1 1 1 80 X 71345551 71345572 CCACTTCTTATATCTCAAGCCC 58 71345613 71345738 ATTGTCAAGTCCTGCTCCA 59 NA Rattus norvegicus 81 Trrap ENSRNOG00000025244 ENSRNOT00000076323,ENSRNOT00000030545,ENSRNOT00000091346 1 3 3 80 12 11604619 11605067 TTTATCAGGTCCAGATCGCA 59 11604558 11604577 TCTCTTCCTTCATCCTCACC 59 NA Rattus norvegicus 81 Trrap ENSRNOG00000025244 ENSRNOT00000076323,ENSRNOT00000030545,ENSRNOT00000091346 3 3 3 80 12 11604621 11605071 GACATTTATCAGGTCCAGATCG 59 11604562 11604580 TTCCTTCATCCTCACCGTC 59 NA Rattus norvegicus 81 Tm7sf2 ENSRNOG00000020989 ENSRNOT00000028485 3 1 1 80 1 221429138 221429156 TCAGCCTCCTTCTCTATGC 59 221428996 221429097 ACACAGAATTTCCTGAGTTTCC 59 NA Rattus norvegicus 81 Safb ENSRNOG00000050543 ENSRNOT00000089164,ENSRNOT00000081770,ENSRNOT00000072868 1 3 3 80 9 10454609 10454703 AACAACCAAGTCAGGAAGC 58 10454547 10454565 TTCACACTGATGACAGGCA 59 NA Rattus norvegicus 81 Ppp1r18 ENSRNOG00000000816 ENSRNOT00000001084 3 1 1 86 20 3389092 3394432 ACAAACAGCTCAAGATCTCC 58 3389025 3389044 CTAGATCCTCCAGTACCGAG 58 NA Rattus norvegicus 81 Taf7l ENSRNOG00000026315 ENSRNOT00000045556 2 1 1 80 X 105296211 105296232 AGGAAATAGAAAGTCAAGGGTG 58 105295772 105296173 CATCATATTCTGATGAACCAGC 57 NA Rattus norvegicus 81 Papd7 ENSRNOG00000017613 ENSRNOT00000023712 2 1 1 80 1 36419472 36421400 TTGACAAAGCTACAGTGCC 58 36421441 36421462 TCTCCATGTTAAAGCTGATGTC 59 NA Rattus norvegicus 81 Lrrc3c ENSRNOG00000031298 ENSRNOT00000039892 2 1 1 60 10 86565275 86565293 CAACCAGCTAGCATCTGTG 59 86565317 86565335 CAGGTTCACTTGGATCTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hpx ENSRNOG00000018257 ENSRNOT00000024710 2 1 1 80 1 170430682 170430781 CAGATGTAATCGAACACTGC 57 170430621 170430639 TAAAGAACAGCATGGTCCC 57 NA Rattus norvegicus 81 Grm8 ENSRNOG00000021468 ENSRNOT00000056996 2 1 2 80 4 55011325 55011344 AATTATCAAACGCCTGCTGG 59 55010450 55011286 AATATCCTCCTGATGTCATCCTC 59 NA Rattus norvegicus 81 Rn60_X_0746.5 ENSRNOG00000051197 ENSRNOT00000075930 2 1 1 60 X 73730285 73730303 TTGCCCATGATGTAGACCC 60 73730243 73730261 ATCTTTCGACAAAGGGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909940 ENSRNOG00000061224 ENSRNOT00000080494 2 1 1 60 3 74781699 74781717 GGAAGAAAGCCTTCTCCAC 58 74781657 74781676 GTACCGTAGAACACAGTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cygb ENSRNOG00000011541 ENSRNOT00000016067 2 1 1 94 10 105622690 105627787 CCTGGTGAGGTTCTTTGTG 58 105622614 105622632 GAGGACTCCTCTCCATCTC 58 NA Rattus norvegicus 81 Fam185a ENSRNOG00000048371 ENSRNOT00000074662 1 1 1 107 4 10269374 10269392 AGACGACATTGATCCCGAG 59 10266541 10266559 ATATTCTGCACGCTCACAG 58 NA DesignNoJunction Rattus norvegicus 81 Zfp219 ENSRNOG00000011544 ENSRNOT00000015418 1 1 1 63 15 28403722 28403740 CCTCAAAGTGCATCTTCGC 60 28403442 28403460 ATAGTCGCAGTGTGGACAC 60 NA DesignNoJunction Rattus norvegicus 81 Ifitm1 ENSRNOG00000004273 ENSRNOT00000005645 2 1 1 81 1 213766958 213766976 GTCCCTGTTCAATACGCTC 58 213767020 213767529 CCTGTCCCTAGACTTCACAG 59 NA Rattus norvegicus 81 Htr2a ENSRNOG00000010063 ENSRNOT00000013408 2 1 1 99 15 56669373 56731589 ATCTGTAGGTATATCCATGCCA 58 56731649 56731667 AACAAAGTTGTCATCGGCA 58 NA Rattus norvegicus 81 Rnase4 ENSRNOG00000025625 ENSRNOT00000090272 1 1 2 60 15 28023067 28034120 TTGCACTTTCTAGGTGACGA 59 28034142 28034161 CAACAAGAGCAGAAGCAAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Atcay ENSRNOG00000020407 ENSRNOT00000041325 2 1 1 81 7 11373776 11373794 AAGTCCCTGATCATCGTCC 59 11373837 11374635 TGAACTTGACACTGATGAAGG 58 NA Rattus norvegicus 81 Gdf15 ENSRNOG00000019661 ENSRNOT00000026652 1 1 1 140 16 20555536 20555554 TCTGAGTCCCAACTCAACC 59 20555657 20557348 CACCTCTGGACTGAGTATCC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100362692 ENSRNOG00000042281 ENSRNOT00000064503 1 1 1 60 15 41508824 41508844 ACTAGAAGCAAGAAGAGTCCT 58 41508784 41508804 TCATCCTTTGTATCTTCCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnc3 ENSRNOG00000019959 ENSRNOT00000027062 1 1 3 115 1 100600606 100600624 AATGACTTGGGTGTCCTGG 60 100601405 100601423 TCTTCTGGAGACATGGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Olr415 ENSRNOG00000049460 ENSRNOT00000070947 2 1 1 60 3 20893894 20893913 AATCTTCAAAGCCTTGTCCA 58 20893932 20893954 TCCATAGTACAGAGAAACCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Phrf1 ENSRNOG00000017299 ENSRNOT00000051755,ENSRNOT00000023376 2 2 2 80 1 214247654 214247674 CAACAACTCAGAAGAAAGGAC 57 214247715 214247964 TGCAGCTTCTTCATGTACTC 58 NA Rattus norvegicus 81 Olr420 ENSRNOG00000007965 ENSRNOT00000010473 1 1 1 60 3 21016692 21016715 CAGATGTTAGCTCTATGTCATGTC 59 21016733 21016752 TGAGGAAGGTATGTAGCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tfap4 ENSRNOG00000005227 ENSRNOT00000006979 3 1 1 92 10 11215981 11216359 TTATCCAGGAGCTGAGTGG 59 11216415 11216433 TCTCATCCTCCCAGATGTC 58 NA Rattus norvegicus 81 Olr636 ENSRNOG00000051516 ENSRNOT00000085537 2 1 1 60 3 76843098 76843118 GGACATTTGCTATACCTCCTG 58 76843138 76843158 TCTTCTCACAAGCAGATCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp3cb ENSRNOG00000054782 ENSRNOT00000082236 1 1 1 80 15 4228235 4229062 CTTCTCTGTTCTCAGGGAGG 59 4229105 4229123 ACTCCACTAGGCAACATCC 59 NA Rattus norvegicus 81 Rn60_18_0146.1 ENSRNOG00000029958 ENSRNOT00000051543 3 1 1 60 18 14731741 14731764 CTATTGTAAGAACAAGCCATACCC 60 14731783 14731801 CTTAGCATCAGGGACACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1560341 ENSRNOG00000021881 ENSRNOT00000031571,ENSRNOT00000030056 2 2 2 80 7 34763573 34764066 TACAAGGATGGAGGAAGGAG 58 34763512 34763531 TCCATATCGTCATGAACCAC 58 NA Rattus norvegicus 81 Crtam ENSRNOG00000008153 ENSRNOT00000010792 3 1 1 81 8 45171208 45171226 AAGAAACAACCTCAGAGGC 58 45167716 45171165 ATCATTGAGACTGTACTCGTG 58 NA Rattus norvegicus 81 Ccdc141 ENSRNOG00000012580 ENSRNOT00000037015 3 1 1 80 3 63882970 63882988 TTGTTACTCCCTCAGTGCC 59 63878739 63882931 CTTCCAAACCATATAGTCGTTGAG 60 NA Rattus norvegicus 81 Rbfox1 ENSRNOG00000002827 ENSRNOT00000066534,ENSRNOT00000082332 1 2 2 84 10 8441225 8441243 ACCTCCGACAAATGTTTGG 58 8427562 8433897 AAACCAAATCCCTTCGAGC 59 NA Rattus norvegicus 81 Kdm5a ENSRNOG00000010591 ENSRNOT00000079090,ENSRNOT00000090218 3 2 2 80 4 152938154 152938732 ATGTCTTAGGTACCGATACCC 59 152938774 152938792 GTGTCATAGGACTGTGCTC 58 NA Rattus norvegicus 81 Cers4 ENSRNOG00000001072 ENSRNOT00000001418 2 1 1 80 12 4446768 4446786 GGCACCTCTATCCTCTACC 58 4445223 4445935 ATTCAGGGTCTGATGTGGG 59 NA Rattus norvegicus 81 Zfp827 ENSRNOG00000011697 ENSRNOT00000015929 3 1 1 80 19 32404050 32404068 CTTGCTGGTCATCTCTGTG 58 32403670 32404007 ACACATTCGAACCCTTTCTC 58 NA Rattus norvegicus 81 Rnase11 ENSRNOG00000039543 ENSRNOT00000060614 1 1 1 80 15 27974901 27975431 AAAGGAACCGACAAGACCA 59 27974839 27974858 GCTCTACAAGAAGCAGTCCA 60 NA InUTR Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000035838,ENSRNOT00000089869,ENSRNOT00000078658,ENSRNOT00000087568,ENSRNOT00000078538 2 5 6 80 20 3305443 3306023 GATGATGGAAGACAAATCTGAC 57 3306063 3306082 GCACAATGGTCTTCATATCG 57 NA InUTR Rattus norvegicus 81 Hoxd13 ENSRNOG00000001588 ENSRNOT00000002155 1 1 1 60 3 61591085 61591103 GGTGTATTGTGCCAAGGAC 59 61591126 61591979 CCCTGGAAAGGATGATTTCC 58 NA DesignNoJunction Rattus norvegicus 81 Mtus2 ENSRNOG00000032410 ENSRNOT00000085869,ENSRNOT00000064721 3 2 2 85 12 8116098 8116116 AGATCCAGGTACTCCAGCA 60 8114411 8116049 TTCCTCCGACAGTTGTCTG 59 NA Rattus norvegicus 81 Slc25a1 ENSRNOG00000038001 ENSRNOT00000000306 1 1 1 82 11 87205947 87205965 TACTGTACTGAAGCAGGGC 59 87206011 87206189 GGTTGTCTCCTTGGTACCA 59 NA Rattus norvegicus 81 Smpd3 ENSRNOG00000000257 ENSRNOT00000031977 2 1 1 90 19 38241069 38241088 GATCTGTTGAAGGGCAATGG 59 38240757 38241015 AATTCTTCCACCTCAGCCT 59 NA Rattus norvegicus 81 Pde10a ENSRNOG00000011310 ENSRNOT00000043474,ENSRNOT00000067142 2 2 2 80 1 52379736 52380584 GGACATCGAGCTATTCCAC 58 52379674 52379693 GACCGATGGATCATGTAGAC 58 NA Rattus norvegicus 81 Acp1 ENSRNOG00000005260 ENSRNOT00000077442,ENSRNOT00000007287 1 2 2 80 6 49837021 49837210 CCTATTATGGCAATGACTCTGAC 59 49836963 49836981 TGAGTTTCTCCAGGAAGGC 59 NA Rattus norvegicus 81 Fam217b ENSRNOG00000053607 ENSRNOT00000091212 1 1 2 87 3 173956695 173956713 AAGATGATGAGCAGCCCTG 60 173956762 173959480 GAGCCAGCATTTATACTGCTG 60 NA InUTR Rattus norvegicus 81 Cd151 ENSRNOG00000019215 ENSRNOT00000026079,ENSRNOT00000089241 2 2 2 80 1 214011918 214011936 GTTGTCATGGTGACTGGAG 58 214011980 214012287 CAGGATGAAGTACAAGCGT 58 NA Rattus norvegicus 81 Wisp3 ENSRNOG00000000597 ENSRNOT00000000735 1 1 1 89 20 44243666 44243684 AAGGAAGATCGATCCACCG 59 44241068 44243613 AGATTCCTGTAAGCTGGCA 59 NA Rattus norvegicus 81 Olr539 ENSRNOG00000009969 ENSRNOT00000013215 3 1 1 60 3 74631712 74631731 AACTCCCAAACTCCATACAC 58 74631671 74631690 GGCATCAACAAATGACAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bhlha15 ENSRNOG00000025164 ENSRNOT00000037251 1 1 1 60 12 12406436 12406454 GATCGAGACCCTCACACTG 60 12406394 12406414 AGTAAGTATGGTGGCTGTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arpc1b ENSRNOG00000000991 ENSRNOT00000001315 1 1 1 84 12 11256204 11256222 CTGTCCTTAGCCTGGACTG 60 11255200 11256156 TAGGCAGAGAAGATCCTGC 59 NA Rattus norvegicus 81 Abcf3 ENSRNOG00000001710 ENSRNOT00000002327 1 1 1 80 11 84034086 84034106 GAGTAAACTGAAGATGCTGGA 58 84028255 84028350 TCAGGGAACTTCAACACCA 59 NA Rattus norvegicus 81 Tubd1 ENSRNOG00000053309 ENSRNOT00000081012 1 1 1 80 10 73872414 73872435 AAGCTACAAGATCAGTACTCCA 59 73872476 73874988 CTGAACAATAACCTCGCCC 59 NA Rattus norvegicus 81 Kidins220 ENSRNOG00000023176 ENSRNOT00000066593,ENSRNOT00000005858 2 2 2 80 6 44262870 44263990 GTGAAGGATTCATGAAAGTCCTG 60 44264028 44264048 TTTGAGTGAAGCTGTCAATGG 59 NA Rattus norvegicus 81 RGD1561252 ENSRNOG00000009530 ENSRNOT00000012842 2 1 1 80 15 86166381 86166776 AGATGCACTTTGAATCAGGG 58 86166819 86166837 GTCTGGCTCTTTCTTCAGG 58 NA Rattus norvegicus 81 Olr1395 ENSRNOG00000046182 ENSRNOT00000048930 3 1 1 60 10 34693394 34693413 CTTCTTCTGTGAGATGCCTG 58 34693435 34693454 CTCTGTATCTCCTGTGTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr681 ENSRNOG00000058748 ENSRNOT00000080527 2 1 1 60 3 77927566 77927585 TCTCCTATGGTGTCATCCTC 58 77927525 77927543 GCTTTCCTTCGTCCTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Glg1 ENSRNOG00000018668 ENSRNOT00000025570 3 1 1 80 19 43074652 43075375 GCTGGAGATGACAGAGGAC 60 43075413 43075437 GTAGAACAGTAGTTCTTGATGTCAC 60 NA Rattus norvegicus 81 Sept3 ENSRNOG00000007686 ENSRNOT00000010491 1 1 1 80 7 123517451 123518056 AATTCAAGCAGAGGGTTCG 58 123518098 123518118 CCAAATCCTCATCAAACTCCT 58 NA Rattus norvegicus 81 Dck ENSRNOG00000003296 ENSRNOT00000004440 2 1 1 80 14 20948656 20948675 ATTGGGAAGTGGTTCCTGAG 60 20944976 20948616 ATGTTGTCAACTCCTCAAACTC 59 NA Rattus norvegicus 81 Olr687 ENSRNOG00000054133 ENSRNOT00000089048 1 1 1 60 3 78016062 78016082 CATAACACCACTGCTCAATCC 59 78016022 78016046 GGCATTCTTCATATCCTTATTCCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr687 ENSRNOG00000054133 ENSRNOT00000089048 2 1 1 60 3 78016703 78016727 CTTCTTGATATTCTTGTCCTTCCTG 60 78016667 78016686 CATCTTGGGTGTTACAGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ddias ENSRNOG00000022521 ENSRNOT00000031974 1 1 1 80 1 157679734 157679752 AACTCAGAGCCTGTTGACC 60 157678518 157679692 TCTCCAAAGTTCGTTACTCCA 59 NA Rattus norvegicus 81 Rn60_4_1361.1 ENSRNOG00000059669 ENSRNOT00000082539 3 1 1 80 4 71245670 71245688 TCTCCTGGAAGGACAAAGC 59 71244664 71245626 ATCCGATCTGCACCTTCAG 60 NA Rattus norvegicus 81 Dohh ENSRNOG00000004259 ENSRNOT00000005640 2 1 1 81 7 11193751 11195810 TATAGTCGAAAGCAGGCAGG 60 11193689 11193709 CTACCTCCTGTTCTGTTACCA 59 NA InUTR Rattus norvegicus 81 Dohh ENSRNOG00000004259 ENSRNOT00000005640 3 1 1 82 7 11193751 11195809 ATAGTCGAAAGCAGGCAGG 60 11193687 11193708 CTCTACCTCCTGTTCTGTTACC 60 NA InUTR Rattus norvegicus 81 Gpha2 ENSRNOG00000021020 ENSRNOT00000028536 2 1 1 86 1 221596602 221596770 CCCTTTAACGTGACAGTGC 59 221596819 221596838 AGACTCACAGTGTCCTACAC 59 NA DesignNoJunction Rattus norvegicus 81 Upf3b ENSRNOG00000039994 ENSRNOT00000032618 1 1 1 80 X 123717423 123718260 ACCAAAGAGGCCTGATGAC 60 123717361 123717379 ATCATGCGCTCCTGATCTC 60 NA Rattus norvegicus 81 LOC500034 ENSRNOG00000007224 ENSRNOT00000009752 3 1 1 98 4 40092914 40121955 TGAATGGTGTTGTAGTGTATGC 59 40092837 40092855 GTCTTAGTGGCGAGGACAG 60 NA Rattus norvegicus 81 Sptssb ENSRNOG00000009388 ENSRNOT00000091198 1 1 2 144 2 166669336 166681789 GATGAAGAAATAGAGCCCAAGG 59 166655587 166655605 TTCACACGCTTGAAATCCA 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ccdc14 ENSRNOG00000021469 ENSRNOT00000033420 2 1 1 80 11 69298514 69301100 CGAAGAACAAGAGGACTCAG 58 69298453 69298471 CCACTCACTGCTGAAAGTC 59 NA Rattus norvegicus 81 Ska2 ENSRNOG00000025981 ENSRNOT00000036098 2 1 1 83 10 74414025 74421283 GAACTGATGTTCCAGAAAGC 57 74421327 74421347 GTGTGGGTGATTAATCTTGAC 57 NA Rattus norvegicus 81 Cbfa2t3 ENSRNOG00000014723 ENSRNOT00000019820,ENSRNOT00000081800 1 2 2 80 19 55446663 55446682 GAAGAAGTGATTGACCACCG 59 55445848 55446625 GATACAGTTCAGGAGACTATTGAG 58 NA Rattus norvegicus 81 Wdr63 ENSRNOG00000014893 ENSRNOT00000020141 3 1 1 80 2 251956779 251956799 CAAGTTGAGAAAGACATTGGC 58 251951398 251956737 TCTTGGAAATGCCCATCTG 58 NA Rattus norvegicus 81 Ptpn5 ENSRNOG00000013981 ENSRNOT00000018860 2 1 1 80 1 103203709 103206863 ATCCTTCCCAATCCTCACAG 59 103203648 103203669 GTTGGCATTGATGTAGGAACTC 60 NA Rattus norvegicus 81 RGD1305347 ENSRNOG00000020259 ENSRNOT00000027432 2 1 1 124 5 137359670 137359863 CAAACTTAACCTTGTCCTTAGGG 59 137359947 137359965 GAGTATGGAGAGGACCACC 59 NA Rattus norvegicus 81 Nob1 ENSRNOG00000021890 ENSRNOT00000034386 1 1 1 80 19 38403657 38403676 GTGAGCTCTTCAATTCAGCA 59 38403716 38403922 TTGTAAGGCTTTAGACTTGGAG 58 NA Rattus norvegicus 81 Uhrf2 ENSRNOG00000011308 ENSRNOT00000015406 3 1 1 80 1 248284778 248285888 TCTGCGATTGCAGTATCCA 59 248285931 248285950 CTCGTCTGCTTCTTTGACTG 59 NA Rattus norvegicus 81 LOC100911888 ENSRNOG00000049467 ENSRNOT00000074022 3 1 1 60 4 1400387 1400407 CTTGTTTGTCCTGTTCTTGGT 59 1400429 1400447 CATCAGAGTCAGGTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103692138 ENSRNOG00000057664 ENSRNOT00000088294 1 1 1 60 4 72332706 72332725 TACATCTCTGTGACTGTGCC 60 72332745 72332766 AGATGCTGTTACTCATAGACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2d5 ENSRNOG00000029128 ENSRNOT00000046024 1 1 1 80 7 123619782 123620906 ATGTACAAGCTTCAACACCG 59 123619721 123619740 CAGTCTGTTGACAATGACCA 58 NA Rattus norvegicus 81 RGD1561551 ENSRNOG00000036959 ENSRNOT00000055538,ENSRNOT00000075667 3 2 2 80 4 177037410 177037429 GAGAAGAGTTATCCCGACCC 59 177033475 177037369 ATGTAGATGATCTTGCACTGC 59 NA Rattus norvegicus 81 Mturn ENSRNOG00000010205 ENSRNOT00000013620 2 1 1 60 4 84862612 84870513 CAAGTCCTTCAGACCTTTGC 59 84870535 84870554 GTACTCTTCAAATGCGTCGT 59 NA DesignRelaxed Rattus norvegicus 81 Mturn ENSRNOG00000010205 ENSRNOT00000013620 3 1 1 60 4 84862614 84870514 AGTCCTTCAGACCTTTGCT 59 84870537 84870556 CTGTACTCTTCAAATGCGTC 57 NA DesignRelaxed Rattus norvegicus 81 Zswim8 ENSRNOG00000009596 ENSRNOT00000063831 1 1 1 80 15 3771912 3772055 CTCCCTCAGCAGATTCTCC 59 3771850 3771871 TACTGTATTGATGGCTGTTGAC 59 NA Rattus norvegicus 81 LOC100910370 ENSRNOG00000048523 ENSRNOT00000073724 2 1 1 80 7 117969528 117969695 GGTGTTGCCATGAATCCTG 59 117969739 117969757 TCTTCGGATAGTGGAAGGC 59 NA Rattus norvegicus 81 Uevld ENSRNOG00000013624 ENSRNOT00000045719 1 1 1 80 1 103010768 103014308 TAGGCAAGTACAAGTTCAGGG 60 103010708 103010726 TGGAGTATCTGAAGTGCGG 59 NA Rattus norvegicus 81 Mbp ENSRNOG00000016516 ENSRNOT00000022303,ENSRNOT00000058295,ENSRNOT00000058296 1 3 5 98 18 79424931 79426828 AGAACATTGTGACACCTCG 58 79430398 79430416 TATAGTCGGAAGCTCTGCC 59 NA Rattus norvegicus 81 Zfp362 ENSRNOG00000043364 ENSRNOT00000007761 3 1 1 100 5 146969345 146973909 GAAAGGACCCTCTAGGATGG 59 146969123 146969142 TAATCAGGACCAGGTTGTCC 59 NA Rattus norvegicus 81 Slitrk6 ENSRNOG00000022337 ENSRNOT00000038433 3 1 1 90 15 95511360 95513750 TGTCTGCTTTACAGACACG 58 95511288 95511309 AGAGATAGACAAGCAAGAAGAG 57 NA InUTR Rattus norvegicus 81 RGD1560559 ENSRNOG00000025031 ENSRNOT00000031780 1 1 1 60 11 83676500 83676521 GCTAATGATAACCCACATTGAG 57 83676461 83676479 TAACAGAAGATGCACTCGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1437 ENSRNOG00000048938 ENSRNOT00000071556 1 1 1 60 10 44407544 44407562 GACACCTTCCTCTTCACAG 58 44407585 44407604 TGATGTTTCCTATGAGAGCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ift140 ENSRNOG00000016545 ENSRNOT00000022063 3 1 1 80 10 14453514 14454330 CTGCCAAGAAGTACCACGA 60 14454374 14454392 TCATCTTCTCGGCCATCTC 59 NA Rattus norvegicus 81 Rrad ENSRNOG00000011901 ENSRNOT00000016259,ENSRNOT00000081547 2 2 2 85 19 563181 563299 CATTTGGGAACAGGATGGA 57 563345 563366 CCGTTATTGAGTACACAATGAC 58 NA Rattus norvegicus 81 Tmem43 ENSRNOG00000007519 ENSRNOT00000010895 2 1 1 80 4 123123622 123124425 GAGTCCAATGAGTACACGG 58 123124717 123124736 AATTTCTGACCTCCACTCTG 57 NA Rattus norvegicus 81 Hspb6 ENSRNOG00000020922 ENSRNOT00000028401 1 1 1 80 1 89009123 89009143 GAGGAAATCTCTGTCAAGGTG 59 89009184 89009287 GAATCCATGTTCATCTGGGC 59 NA Rattus norvegicus 81 RGD1561143 ENSRNOG00000046184 ENSRNOT00000075641 1 1 1 108 12 21868952 21922395 CAAACTCATCATTCATGCTCTC 58 21868865 21868883 TGAAGGATTCCTCTGGTCC 58 NA Rattus norvegicus 81 Pih1d3 ENSRNOG00000054900 ENSRNOT00000087634 2 1 1 80 X 111402834 111402854 CATCTGGAATCCAGAAGAGGT 59 111402892 111410398 ATCTCATAATCTGGGACTTCTCG 60 NA Rattus norvegicus 81 Tmprss11bnl ENSRNOG00000002002 ENSRNOT00000002743 2 1 1 81 14 24108174 24108194 CATCTTACATCAGATGCTGGA 58 24107463 24108132 TTTAGTGATTTCCGTGAGCT 57 NA Rattus norvegicus 81 Rftn1 ENSRNOG00000011321 ENSRNOT00000015210 2 1 1 80 9 12853686 12881364 CGGAGTTCATTAAGAAGGTACAG 59 12881404 12881422 CAGAGGTCTGGTACTGAGG 59 NA Rattus norvegicus 81 LOC100233176 ENSRNOG00000046085 ENSRNOT00000088000 1 1 2 89 6 126636275 126636293 GTTCTTCGGGACCCTAGTG 60 126622249 126622267 TAATACGCAGAGGTCCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Tmprss6 ENSRNOG00000000184 ENSRNOT00000000200 3 1 1 80 7 119671728 119671946 CATCTCACGGTTCCCTCTC 60 119671666 119671685 TAGGTTGTACTTCTGCCTCC 59 NA Rattus norvegicus 81 Mllt4 ENSRNOG00000023753 ENSRNOT00000032667 3 1 1 80 1 53736185 53736315 GAAGCCCTCTTCTAACTCCT 59 53735687 53735707 AAGCACTCAAGTTCTCTTCTC 58 NA Rattus norvegicus 81 Pdia4 ENSRNOG00000006228 ENSRNOT00000008728 3 1 1 80 4 77481997 77483349 ACCCAGGAAGAAATTGTTGC 59 77481936 77481957 CAATGTAAGAGTGACTTCAGGT 58 NA Rattus norvegicus 81 Fam26f ENSRNOG00000037757 ENSRNOT00000057317 3 1 1 60 20 27682255 27682273 CAGGAGATCCTGAGTCAGC 59 27681608 27681626 CAGCTATCAGAACCCAACC 58 NA DesignNoJunction Rattus norvegicus 81 Zufsp ENSRNOG00000000398 ENSRNOT00000000448 2 1 1 80 20 32481185 32482855 CCTCACTGAAAGTCAAGTGC 59 32481124 32481142 ACTCGAATAAGCGAGGGTG 60 NA Rattus norvegicus 81 Lrrc57 ENSRNOG00000009143 ENSRNOT00000049756 2 1 1 80 3 112384030 112384050 GATTCGGAGTATACCTGACAC 58 112367783 112383992 GAGATCTGAGATATCTGGTTCTG 58 NA Rattus norvegicus 81 Olr421 ENSRNOG00000032321 ENSRNOT00000051973 2 1 1 60 3 21027476 21027496 TAGTCAGCCTTAACAGTCTCC 59 21027436 21027457 TTTCCACAGAAGGTTAAACGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Asb6 ENSRNOG00000024786 ENSRNOT00000034927 2 1 1 80 3 9661338 9661873 GCAGACAAGAATGGGAAGAC 59 9661277 9661296 GATGTTGTCTGTGTTGTGGA 59 NA Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000088819,ENSRNOT00000066004,ENSRNOT00000079954 2 3 7 60 2 186117163 186117186 TCTGAATAGAAGTGAGTCCTTGAG 60 186117126 186117144 CCCAAAGTCAGGAATCCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dclk2 ENSRNOG00000016550 ENSRNOT00000088819,ENSRNOT00000066004,ENSRNOT00000079954 3 3 7 60 2 186117158 186117176 AGTGAGTCCTTGAGAGGGT 60 186117116 186117136 GAATGCAGTTCCCAAAGTCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mllt10 ENSRNOG00000022249 ENSRNOT00000034157 3 1 1 80 17 84936826 84936855 ATCCAGGAACAATGTCAGC 58 84939978 84939998 CAGAAGATGACTTTACACTGC 57 NA Rattus norvegicus 81 Plekhg6 ENSRNOG00000019528 ENSRNOT00000026441 1 1 1 80 4 157888172 157888385 GACAACATGATCGTAGCCG 59 157888110 157888130 TAAACTCTCCTGCTCTTCACC 60 NA Rattus norvegicus 81 Olr422 ENSRNOG00000032102 ENSRNOT00000044461 3 1 1 60 3 21060668 21060688 ACCCTTTAAGATACTCTGCCA 59 21060628 21060651 GAGGTCAATGTTATTCTCAGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dfnb31 ENSRNOG00000001700 ENSRNOT00000082513,ENSRNOT00000002309 3 2 2 80 5 79239637 79239656 CATTAGACCTGGAGGGAACC 60 79238785 79239595 ATCTGACATCGTCCACAGAC 60 NA Rattus norvegicus 81 Prcc ENSRNOG00000012933 ENSRNOT00000017735 2 1 1 80 2 187236150 187240719 GATGAAGCATTTAAGCGGC 58 187236088 187236107 GTCATCACCTTTGATCTCCA 57 NA Rattus norvegicus 81 Pard6g ENSRNOG00000055157 ENSRNOT00000084621 3 1 1 81 18 76559934 76590090 GAAGTCAAGAGCAAGTTTGGG 60 76590128 76590151 GGTAGAAATCTTCAAACTTCCCAG 60 NA Rattus norvegicus 81 Tmco5b ENSRNOG00000000009 ENSRNOT00000000010 3 1 1 80 3 104763763 104763781 CCCAGAATGACTCTTCCCA 59 104763823 104764109 TGATGTTCTTCTCCATGTTGC 59 NA Rattus norvegicus 81 Dtwd1 ENSRNOG00000009593 ENSRNOT00000012966 2 1 1 80 3 118431041 118431061 TACTGCTACACATGCTATGTC 58 118431101 118434807 ATCAATCTTCAGTGGAAGCTG 58 NA Rattus norvegicus 81 Iqub ENSRNOG00000021729 ENSRNOT00000064983 2 1 1 80 4 51577630 51579984 CCTATACAGGAATCAGTGTTGG 58 51577571 51577592 CATTCATTTGAACGATTTCCCG 59 NA Rattus norvegicus 81 Amigo1 ENSRNOG00000045665 ENSRNOT00000074725 3 1 1 60 2 210979090 210979110 TCAACACAGCCTATACTACCC 59 210979129 210979150 TATATGAGGACCAGAACCACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dkk1 ENSRNOG00000048688 ENSRNOT00000074393 1 1 1 88 1 248896678 248896696 AAACCTTGGCAATGACCAC 59 248896485 248896626 CTTCTTGCCCTTTGGTGTG 59 NA Rattus norvegicus 81 Stk39 ENSRNOG00000024808 ENSRNOT00000037133,ENSRNOT00000087122 1 2 2 80 3 54548464 54548485 AATCGCAACAATCCTTAAGGAG 59 54547290 54548427 GCTTTCAAATCCCTATGGATCTG 60 NA Rattus norvegicus 81 Prr19 ENSRNOG00000043154 ENSRNOT00000068251,ENSRNOT00000088955 3 2 2 124 1 82171916 82171936 CATAAGAACCTTACAGGGCTG 59 82172111 82172129 AAGAAGGTGCCATCCTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Armc3 ENSRNOG00000016716 ENSRNOT00000075188 3 1 1 80 17 85939194 85942477 GAGACCAAGGAACTGAACG 58 85942520 85942539 CACCATTGTGTCCATATCCT 57 NA Rattus norvegicus 81 Mrps18b ENSRNOG00000000804 ENSRNOT00000081904 1 1 3 60 20 3344939 3344960 TCCTTCACTCTTACGAAGTTCC 60 3344981 3344999 CGGCAGAGAAATTCCTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndufv3-ps1 ENSRNOG00000027593 ENSRNOT00000030926 1 1 1 60 13 51297441 51297459 GTGTTCAAAGAGCCCACAC 59 51297399 51297417 GCAGGTTCTTGTAGGTGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxo24 ENSRNOG00000024922 ENSRNOT00000038397 3 1 1 80 12 22145786 22145804 ATGAGCTTCAAGCAGATCG 58 22145845 22147267 GTATATCTTCCCTTCCTCTGTG 58 NA Rattus norvegicus 81 Lbhd1 ENSRNOG00000019701 ENSRNOT00000039991 2 1 1 95 1 225085671 225086653 TCAAGAAACGTGCATCCAG 59 225086712 225086730 TTTCTTTCTGGGCAAGTCG 58 NA Rattus norvegicus 81 Snx4 ENSRNOG00000001786 ENSRNOT00000002432 3 1 1 80 11 70703619 70705832 ATCACATGGACGTGTATGC 58 70703557 70703575 AGTACTCCTTCAGCTGGTC 58 NA Rattus norvegicus 81 AABR07072281.1 ENSRNOG00000052199 ENSRNOT00000071110 3 1 1 80 12 21968699 21969200 ATGCTGATCCAGAGAAGGT 58 21968637 21968656 CCATCTCAGAATTCACTCCC 58 NA Rattus norvegicus 81 Car1 ENSRNOG00000010698 ENSRNOT00000014267 1 1 1 93 2 88217825 88217843 TACAATCCTGCAACTGCCA 60 88217900 88220206 CACCTTTCAGCACTGACTG 59 NA Rattus norvegicus 81 Rsbn1l ENSRNOG00000013431 ENSRNOT00000046142 2 1 1 64 4 10794822 10797179 AAAGTGTACATTGCCATGGG 59 10797203 10797224 CATCACTATCTTTCCGACTCTC 58 NA DesignNoJunction Rattus norvegicus 81 Ache ENSRNOG00000050841 ENSRNOT00000089392,ENSRNOT00000075504,ENSRNOT00000086915 1 3 3 76 12 22476003 22476021 GGCCCTCATCAATACTGGA 59 22475581 22475599 GAAAGTAGGAGCCCTCGTC 60 NA DesignNoJunction Rattus norvegicus 81 Cdc45 ENSRNOG00000050071 ENSRNOT00000072027 2 1 1 80 11 86343459 86345603 GCAAATAAGTTTGGGATGAAGG 58 86345644 86345662 ACTGGCCAGGAATTTATGC 58 NA Rattus norvegicus 81 Cenpt ENSRNOG00000024178 ENSRNOT00000036702 3 1 1 80 19 37817944 37817962 CGTACTCTAAGAGGCAGGG 59 37817747 37817901 CCAATCTACCAACAGACCCA 60 NA Rattus norvegicus 81 Zfp846 ENSRNOG00000020356 ENSRNOT00000068461 2 1 1 80 8 21614399 21614418 TGAGGTCATCAAACCCAGTC 60 21614460 21614922 GGCATTTCCCATTCTTGGAG 59 NA Rattus norvegicus 81 Olr297 ENSRNOG00000046995 ENSRNOT00000040377 3 1 1 60 1 212941122 212941141 CTACAGTAGTGCCAACCTCC 60 212941081 212941102 CATGAGGGAAAGATTGACTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910838 ENSRNOG00000024641 ENSRNOT00000029041 2 1 1 88 12 22033370 22033388 ATCCACCATGATCGAGGAG 59 22033439 22034204 CCTGTGAAATCTCCATTCCG 59 NA Rattus norvegicus 81 Pcdhb15 ENSRNOG00000020054 ENSRNOT00000027164 2 1 1 60 18 30552185 30552205 ATAACAGTGCAGGTTTCTGAC 59 30552225 30552245 TGTAGGAGGTTTGGGTAAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd9 ENSRNOG00000019556 ENSRNOT00000026633 1 1 1 80 4 157978159 157978177 TCGATGAGGTCTTCCACAG 59 157977619 157978117 TCATACCGAAGATCATCACCA 59 NA Rattus norvegicus 81 Krtap12-2 ENSRNOG00000042956 ENSRNOT00000067800 1 1 1 103 20 11638333 11638381 TATGTGCCTGCTGTATGCA 60 11638248 11638266 AAAGAGGACTGGCATGAGG 59 NA DesignNoJunction Rattus norvegicus 81 Ube2g2 ENSRNOG00000001222 ENSRNOT00000001636 3 1 1 81 20 11704215 11704234 GTTTCCCACTTGACTACCCT 59 11702486 11704171 CCGTCAGGGTAGATGTTGG 60 NA Rattus norvegicus 81 Smim23 ENSRNOG00000027196 ENSRNOT00000031337 3 1 1 80 10 17718156 17718174 CAGTTGGGAAGTGTCAGGA 59 17717899 17718115 GTCTGATATTCAAAGTCCTGGG 59 NA Rattus norvegicus 81 LOC100909784 ENSRNOG00000049639 ENSRNOT00000087359,ENSRNOT00000072470 3 2 2 123 4 51662013 51667057 GAATGTGGAAAGCTTGCAG 58 51667143 51667162 CTTCCTCTGTAGACTCCTCC 58 NA Rattus norvegicus 81 Nmrk2 ENSRNOG00000042897 ENSRNOT00000066348 3 1 1 80 7 11385664 11385683 TCTTTGATGGTCACGTATGG 58 11385723 11385907 CTAAATAGACCACTTCCACTCG 58 NA Rattus norvegicus 81 Tbc1d16 ENSRNOG00000049758 ENSRNOT00000075171 3 1 1 80 10 108259751 108262146 ACTACCAGACGGACTATTTCC 59 108259691 108259709 GTTGTTGCTCGATGACGTC 60 NA Rattus norvegicus 81 Sfxn5 ENSRNOG00000037871 ENSRNOT00000057537 2 1 1 80 4 116995321 117008826 GATGTCAGAGATTGAAACCTCC 59 116995262 116995280 CCCTTGTTGTACACCACTG 58 NA Rattus norvegicus 81 MGC114492 ENSRNOG00000032629 ENSRNOT00000050147 2 1 1 125 X 139261346 139261697 CCATTCTTCAAGGCCTGTG 59 139261239 139261257 CAAACTGAGTGCTGTCCAG 59 NA InUTR Rattus norvegicus 81 Churc1 ENSRNOG00000007336 ENSRNOT00000009621 1 1 1 113 6 99823373 99823397 GGAGAAGAAATAGTTACCTATGACC 59 99825720 99831427 ACACAGCATGGTATATTCCTG 58 NA Rattus norvegicus 81 Fam212a ENSRNOG00000019363 ENSRNOT00000026216 3 1 1 162 8 116764640 116764658 TGACAGTTTCCTGAGCCAG 60 116763867 116763885 GCAGACAGAGTCCTCTTCC 60 NA DesignNoJunction Rattus norvegicus 81 Mn1 ENSRNOG00000027489 ENSRNOT00000029508 1 1 1 80 12 51214356 51246500 ACAAAGAAGTTCATGACCACC 59 51214296 51214314 AGTGGACAGTCAGACACTG 59 NA Rattus norvegicus 81 Sele ENSRNOG00000002723 ENSRNOT00000076757,ENSRNOT00000030677 3 2 2 80 13 82362163 82362184 ATTGTCCTCATTGATCTACGTG 58 82362584 82362705 CTTTGGCAGCTACTAGCAG 58 NA Rattus norvegicus 81 LOC100912642 ENSRNOG00000030466 ENSRNOT00000089521 2 1 1 80 5 119479261 119480652 CAGAAATGACAAAGTACCCAGAC 60 119479203 119479221 AGAAGAGGTCCAGAGTGGT 60 NA Rattus norvegicus 81 Cyp2j4 ENSRNOG00000031004 ENSRNOT00000012977 1 1 1 80 5 119555160 119557281 AAGGAAATGTCAAAGTACCCAG 59 119555101 119555119 AAAGAAGAGGTCCAGGGTG 59 NA Rattus norvegicus 81 Sgsm2 ENSRNOG00000027194 ENSRNOT00000034298,ENSRNOT00000079926 2 2 2 80 10 61707923 61707941 AGGATGAGCCAGAACTTCC 59 61706684 61707880 GTCCAAGATCTGGATGAGGG 60 NA Rattus norvegicus 81 Lrch4 ENSRNOG00000001402 ENSRNOT00000001899 3 1 1 80 12 22130729 22130747 CTTTCCGGATCTCAGAGCT 59 22130577 22130686 CCAAGTCTCCATCACCAGAG 60 NA Rattus norvegicus 81 Olr462 ENSRNOG00000009624 ENSRNOT00000012746 1 1 1 60 3 73226223 73226243 CCTCTCCACTATAGCACTCTC 59 73226183 73226201 AAGAGCCCAGCATTAGGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564571 ENSRNOG00000042795 ENSRNOT00000001348 1 1 1 80 12 2782503 2782521 GGATAGGGCTGTCAGACTC 59 2781202 2782460 ACCAATAGTTCCTCCACTGC 60 NA Rattus norvegicus 81 Pan3 ENSRNOG00000000942 ENSRNOT00000044134 1 1 1 80 12 9233462 9233566 TTCCGAGCCTTCTCTTGTG 60 9233400 9233421 TTTGGGTCATTAAAGTGTCTGC 60 NA Rattus norvegicus 81 Lrch1 ENSRNOG00000009412 ENSRNOT00000047192 2 1 1 80 15 56808125 56817532 TCGTTCAGTGTTTCTAAGACCT 60 56808066 56808084 ATCTGCTCCATCTTCCTCC 59 NA Rattus norvegicus 81 AABR07055660.1 ENSRNOG00000048637 ENSRNOT00000045619 3 1 1 89 7 7534403 7534424 TGGACTCTCACTTAAAGACTCC 59 7534329 7534351 CAAATCTGGGAATGGAAACAC 58 NA DesignNoJunction Rattus norvegicus 81 Ctse ENSRNOG00000006963 ENSRNOT00000048391,ENSRNOT00000009241 1 2 2 80 13 48439135 48439153 GATCGAATTCAGCGAGTCC 59 48439194 48439746 CCAAAGTATTCCATATCCAGGT 58 NA Rattus norvegicus 81 AABR07003433.1 ENSRNOG00000037133 ENSRNOT00000056014 3 1 1 80 1 109665968 109665990 CAGGAATCCTACAGAAATGATGG 59 109666030 109666073 ACAACCCATTGTGGTTCCT 60 NA Rattus norvegicus 81 Sub1 ENSRNOG00000050563 ENSRNOT00000074446 3 1 1 85 2 62029779 62029797 AGAGTTCTAGAGCACTGGC 59 62025159 62029736 GACATATCTCATCTTTCCAATCTGG 60 NA Rattus norvegicus 81 Dock2 ENSRNOG00000006932 ENSRNOT00000059810 3 1 1 80 10 19514476 19516187 TAGTGAAGTTCCTCCAGGAC 59 19514415 19514436 GGATGTCATACTCGTTACTCTG 58 NA Rattus norvegicus 81 Bfsp2 ENSRNOG00000010899 ENSRNOT00000032376 2 1 1 80 8 111917093 111935705 CAAGCTAAGCAGCAGACAG 59 111917031 111917050 TAACTCTACACTGAGGGCAG 59 NA Rattus norvegicus 81 Sec61a2 ENSRNOG00000023278 ENSRNOT00000039621 2 1 1 80 17 76362968 76370774 CTTAGTATGCTGTCAGATTCCAC 59 76370808 76370832 AGAATAACTCTCATCCAGTAGAAGG 60 NA Rattus norvegicus 81 Pcdhb2 ENSRNOG00000039476 ENSRNOT00000060497 1 1 1 60 18 30377863 30377883 CACTCTATCTGGTCATTGCCT 60 30377905 30377923 AGCAGTAGAGACAGGAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr865 ENSRNOG00000058382 ENSRNOT00000090022 1 1 1 60 5 137812219 137812240 CAGCCACTTACATCTACATGAG 59 137812180 137812199 ATCTGCTTGTCTCGATCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr157 ENSRNOG00000017528 ENSRNOT00000055536 3 1 1 145 5 167110297 167120933 TTTCACCTCATCAGCTGGG 60 167121042 167121060 AGTAGCATCCACAGGACAC 59 NA Rattus norvegicus 81 Tp53tg5 ENSRNOG00000026215 ENSRNOT00000029206 2 1 1 80 3 160921725 160922036 AGTAAAGTGGCTTCTAAGATGC 59 160921666 160921685 GTTCCGCTCAATTACTTTGC 58 NA Rattus norvegicus 81 RGD1311783 ENSRNOG00000020076 ENSRNOT00000027196 3 1 1 80 1 266461685 266462427 TTCAGTACCAGCAAGAAGC 58 266463098 266463119 ACTTCAGTAAATGACTCAGCTG 59 NA Rattus norvegicus 81 Tmprss11b ENSRNOG00000033910 ENSRNOT00000029805 1 1 1 80 14 23456231 23456250 GAAGCTACTCAGAAGTTCCC 58 23456293 23457307 AGGACTGTCTCCATCTGAC 58 NA Rattus norvegicus 81 Hspbp1 ENSRNOG00000017795 ENSRNOT00000024251 2 1 1 81 1 72751512 72751530 AAGTGCAGAAGCTCAAGGT 60 72751574 72751695 CAAAGGGTTCCTTTGTGCTC 60 NA Rattus norvegicus 81 AABR07060190.1 ENSRNOG00000030979 ENSRNOT00000051232 2 1 1 60 4 61502470 61502488 ACTCGAAGAGCCAAGAGTC 59 61502428 61502450 CTCTTTCTTCTGATCTTTCTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0842.3 ENSRNOG00000051020 ENSRNOT00000030922 2 1 1 60 13 79272994 79273012 AGCTGAAATTTCGCTGCAC 60 79272952 79272970 TGAACCCTTAGGTTCAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0842.3 ENSRNOG00000051020 ENSRNOT00000030922 3 1 1 60 13 79273124 79273142 GCCACCAAGTATCTGAAGG 58 79273082 79273100 TTATACCGCCAAATGGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpb1 ENSRNOG00000030904 ENSRNOT00000043381 2 1 1 80 2 105070029 105070049 ACTCATACTCACAGATGATGC 58 105061798 105069987 CCAGGGCATTCAATTCCTC 59 NA Rattus norvegicus 81 Sst ENSRNOG00000001837 ENSRNOT00000002519 3 1 1 67 11 80358408 80358426 CAGACTCCGTCAGTTTCTG 58 80358457 80359096 AGTACTTGGCCAGTTCCTG 59 NA DesignRelaxed Rattus norvegicus 81 AABR07017838.1 ENSRNOG00000048203 ENSRNOT00000072127 3 1 1 105 15 31719899 31720035 CTCCTCATCCTCACAAGGG 59 31720104 31720122 CGGCTGAATAGTTGCAGTG 59 NA Rattus norvegicus 81 Tnfsf4 ENSRNOG00000002968 ENSRNOT00000003969 2 1 1 82 13 79270255 79270275 CTATGTCTGCCTGCAATTCTC 59 79290221 79292357 CCTCACATCCGGTAACTGG 60 NA Rattus norvegicus 81 Ncl ENSRNOG00000018273 ENSRNOT00000024712 2 1 1 80 9 93371740 93371761 CTGTTTCACTCTACTACACTGG 58 93371222 93371700 TTGATTCACCACTCCAAGTG 58 NA Rattus norvegicus 81 Eif2ak1 ENSRNOG00000001050 ENSRNOT00000001392,ENSRNOT00000079836 3 2 2 80 12 12776175 12776193 TGAGACTCCACCACAACAG 59 12774007 12776134 TATCTTGACAAGGATCCTGACG 60 NA Rattus norvegicus 81 Amz1 ENSRNOG00000024264 ENSRNOT00000039726,ENSRNOT00000090318 1 2 2 80 12 15980291 15980309 TGGACCTCTGTCCTATCTG 58 15977435 15980247 TGTGCAGTCTCTTGTACCT 58 NA Rattus norvegicus 81 Mvd ENSRNOG00000013376 ENSRNOT00000018145 3 1 1 85 19 55262792 55263147 TTATCCTTGTGGTGAGTGCA 59 55262726 55262744 CTTGAGCAGGGTACTGGTC 60 NA Rattus norvegicus 81 AABR07055527.1 ENSRNOG00000039997 ENSRNOT00000061482 3 1 1 97 7 4951956 4951977 CCCAATTAAAGTAACACTGGCA 59 4952034 4952147 CTAACAGTTGACCACAGGTG 59 NA Rattus norvegicus 81 Slc39a1 ENSRNOG00000059463 ENSRNOT00000089016 1 1 1 80 2 189611019 189613359 CATGTGACGCTTCAGTTCC 59 189613403 189613421 TGTGATCTGCTCCATCACC 60 NA Rattus norvegicus 81 Hacd4 ENSRNOG00000005772 ENSRNOT00000033651 2 1 1 80 5 106742063 106746204 TATGGTAAGGTACACTTACAGC 57 106742004 106742023 CATAGTGTTTGACTGAGCCA 58 NA Rattus norvegicus 81 LOC100912431 ENSRNOG00000049332 ENSRNOT00000072248 2 1 1 60 3 73509467 73509487 TTCTACTGTGATGACATGCCT 59 73509427 73509449 GCTGTTTGTAGTGAGTATCTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Metrn ENSRNOG00000019692 ENSRNOT00000026676 2 1 1 114 10 15165762 15165781 CAACGTGCAGAAATGTCTCC 60 15164786 15164888 CATGGATCACAAAGTCACTGG 59 NA Rattus norvegicus 81 Add3 ENSRNOG00000012820 ENSRNOT00000044827,ENSRNOT00000017600,ENSRNOT00000086496 3 3 3 80 1 273946274 273946293 CAATCTATTCAACCCGTCCC 59 273946336 273946831 ACTTCATGGAAGACACAGC 58 NA Rattus norvegicus 81 Slc15a3 ENSRNOG00000021644 ENSRNOT00000029443 1 1 1 80 1 226903589 226907909 TCTTCCAGGAACTCTGAAGG 59 226907948 226907970 CATATCTTCTTGTGGAGAAGGTC 59 NA Rattus norvegicus 81 Ube2d1 ENSRNOG00000000611 ENSRNOT00000000750 3 1 1 80 20 18572215 18572322 GAGATGACTTGTTCCATTGGC 60 18574758 18574777 CAGTGAGGAAGAAGACTCCA 59 NA Rattus norvegicus 81 Nt5m ENSRNOG00000003332 ENSRNOT00000004448 2 1 1 80 10 46228861 46241104 TCCCTATGAGAAGTATGCCTG 59 46241145 46241164 GTCTTGTCTCTGGTCAACAC 59 NA Rattus norvegicus 81 Thegl ENSRNOG00000002085 ENSRNOT00000002860 1 1 1 87 14 33394481 33394499 CTATTCCGATCCCTCTCCC 58 33392551 33394433 AGTTTGAATAGTCTTTGGAGGG 58 NA Rattus norvegicus 81 C8b ENSRNOG00000007639 ENSRNOT00000010100 2 1 1 80 5 124326552 124333390 CATCATCAAGCTCAAGGCTG 59 124333432 124333451 TTCTGTTTCACTGTGCTGGA 60 NA Rattus norvegicus 81 C8b ENSRNOG00000007639 ENSRNOT00000010100 3 1 1 80 5 124326553 124333390 ATCATCAAGCTCAAGGCTG 58 124333434 124333452 GTTCTGTTTCACTGTGCTG 57 NA Rattus norvegicus 81 Sun1 ENSRNOG00000001299 ENSRNOT00000089418,ENSRNOT00000047287 1 2 2 80 12 17501962 17501981 ACTGTGGGTCAAGGATATGG 59 17500914 17501922 AGGAAGTCAGTCTTAGCATCAG 60 NA Rattus norvegicus 81 Cpeb1 ENSRNOG00000019161 ENSRNOT00000080925,ENSRNOT00000026009,ENSRNOT00000078789 1 3 3 80 1 143174182 143174204 CCCTATCTAGAAGATTCTCTGTG 58 143172849 143174143 CTTGAAGCAGACCTGATCTC 58 NA Rattus norvegicus 81 Chmp6 ENSRNOG00000004014 ENSRNOT00000005379 2 1 1 80 10 109075906 109075926 ATCGAGATGAAGGTGATGGAG 60 109075966 109076551 CTCCTCTATGGACATCACCTG 60 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000087295 2 1 12 86 20 3363757 3364248 CATTCCTGGGTACAGGTCG 60 3364298 3364316 CTTGGAGCAACTGTATGCG 59 NA Rattus norvegicus 81 AABR07017783.1 ENSRNOG00000047444 ENSRNOT00000070880 1 1 1 81 15 31032797 31032914 GATAAACTTTCTCCTGAGAGTTGC 60 31032951 31032972 AGAGTCTTCTTCAGAGACAGTG 59 NA Rattus norvegicus 81 Sft2d1 ENSRNOG00000024140 ENSRNOT00000049831 1 1 1 80 1 53003986 53005079 TATTATGCTGTTGTGCCTGG 58 53002366 53002384 ATGCAGAAGAGTAAGGCCA 59 NA Rattus norvegicus 81 Prkrip1 ENSRNOG00000001426 ENSRNOT00000001937 3 1 1 100 12 23516307 23518971 GATGTCATGGGTTCCAGTG 58 23519035 23519053 ATGGCATCCATGTAGTCCT 58 NA Rattus norvegicus 81 Klhdc7a ENSRNOG00000018867 ENSRNOT00000025517 1 1 1 60 5 158438294 158438313 AGTGCTTCCCATACCTTCTC 59 158438253 158438272 TCTGTATCACGTTCTCCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdh11 ENSRNOG00000013481 ENSRNOT00000018535 3 1 1 80 19 2506759 2506779 ACATTAATGACAACCCTCCAG 58 2506820 2509692 CTGAAGTTCCCACATTGGAC 59 NA Rattus norvegicus 81 Rsph6a ENSRNOG00000061526 ENSRNOT00000090515 1 1 1 85 1 79960261 79962052 AACCTCAGCCTGTATGAGC 60 79962101 79962119 GACTCCAGGATGGACAAGG 60 NA Rattus norvegicus 81 AABR07067896.1 ENSRNOG00000046343 ENSRNOT00000072983 2 1 1 80 9 71845942 71848858 CCAGTGGGAGAAAGTGAGAG 60 71845881 71845901 GATAAGATCAGTGCTTCTCGC 59 NA Rattus norvegicus 81 Ndufb11 ENSRNOG00000008329 ENSRNOT00000011183 3 1 1 86 X 1787687 1787705 GAAAGCGGCAAAGAGAACC 60 1787755 1789015 GAAAGTCTGGGTTCTTCGC 59 NA Rattus norvegicus 81 Creb5 ENSRNOG00000008622 ENSRNOT00000031365,ENSRNOT00000086473 1 2 2 80 4 83832919 83833831 CACAAGGATACTTAAGTCCAGAG 58 83833871 83833889 TATGCTGGATGACTTGCTG 58 NA Rattus norvegicus 81 Cdr2l ENSRNOG00000025815 ENSRNOT00000035865 1 1 1 80 10 103942372 103942390 AAACAAGGAGCTGGAGGAG 59 103942433 103942712 TTGGTCAGGTACTCGATCTC 59 NA Rattus norvegicus 81 Olr1399 ENSRNOG00000049535 ENSRNOT00000050554 1 1 1 95 10 34756769 34756787 AACATCAAGTCCATGGCTG 58 34756846 34772405 TGTGTAGATAGCTGAGCCA 58 NA Rattus norvegicus 81 Slc9b2 ENSRNOG00000023404 ENSRNOT00000031425 1 1 1 80 2 240496694 240500153 GAGTGATAACTAATGGTACCATGG 59 240500191 240500210 CTCCAGGAAGACATTCAGGG 60 NA Rattus norvegicus 81 Med7 ENSRNOG00000007053 ENSRNOT00000009238 1 1 1 80 10 31535054 31535461 TGGTCTTAGGTTCTTGATTGTC 58 31535502 31535520 TGATGTACTGCATTGGAGG 57 NA InUTR Rattus norvegicus 81 Rbm12 ENSRNOG00000019723 ENSRNOT00000047246 1 1 1 60 3 151643901 151643922 CTACCTACTGGAATGAATGGCT 60 151643862 151643885 CAGGGTTCAGATTATTGTTCAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf112 ENSRNOG00000002364 ENSRNOT00000003228,ENSRNOT00000085011 1 2 2 80 10 47721206 47721224 CTGTTACCTCCTTCCTGCT 59 47721044 47721163 AAGTCATCTTCTGTGTTGCC 59 NA Rattus norvegicus 81 Glrx5 ENSRNOG00000004206 ENSRNOT00000005781 2 1 1 96 6 128751101 128759062 GAGGCAAGGTATTAAAGACTATTCC 60 128759115 128759134 CATCTGCAGAAGGATGTCAC 59 NA Rattus norvegicus 81 Atmin ENSRNOG00000051838 ENSRNOT00000079159 2 1 1 100 7 74327029 74327048 GAGAAACCCAAACCTGTAGG 58 74326945 74326966 ATATGACGAATGGACGCCA 59 NA DesignNoJunction Rattus norvegicus 81 Pam ENSRNOG00000033280 ENSRNOT00000043451,ENSRNOT00000041418,ENSRNOT00000056457 2 3 3 82 9 111078784 111078804 GGAACCTGTACAGATAAAGCC 59 111078848 111080128 AATCCAACACCTTTCGGGA 59 NA Rattus norvegicus 81 Tet2 ENSRNOG00000023579 ENSRNOT00000046775 2 1 1 80 2 238735562 238736360 TGCTAAATGGGTGTATCGG 57 238735500 238735518 TCACATGTATGCTTGGCTC 58 NA Rattus norvegicus 81 Trappc3l ENSRNOG00000031290 ENSRNOT00000047000 3 1 1 92 20 27660743 27660761 CATAGAAGAGCTGCCTGCT 60 27660815 27664291 GCTAAATGAACCATCTCCAGG 59 NA Rattus norvegicus 81 Fbxo43 ENSRNOG00000010459 ENSRNOT00000014333 3 1 1 87 7 74925574 74925685 ATTTGAAGGTTGCCAGGAC 58 74925505 74925524 TTATGCGGCTGATACTTAGC 58 NA Rattus norvegicus 81 Fam3c ENSRNOG00000060349 ENSRNOT00000090583 1 1 1 80 4 49414490 49422722 TTAGGAAGTCTATTTGCCCGA 59 49413503 49413523 TGAGATCCCACATTTGTACCT 59 NA Rattus norvegicus 81 LOC102556119 ENSRNOG00000029678 ENSRNOT00000004902 3 1 1 70 10 36419712 36419730 CAAGGAGAAGAACCCTGGA 59 36414317 36419681 AGACTGCTATTACATCCAAGAG 58 NA DesignRelaxed Rattus norvegicus 81 Zdhhc8 ENSRNOG00000021891 ENSRNOT00000048063 2 1 1 80 11 86909719 86909737 CAACATGCCACTTCTACCG 59 86909781 86909889 AGTGGTGGTCAAAGTCCTC 59 NA Rattus norvegicus 81 AABR07017623.1 ENSRNOG00000046052 ENSRNOT00000075484 3 1 1 84 15 29345549 29345741 GATTTGCTGGGTGAGAGGA 59 29345483 29345502 ACATCTCAGAGCAGGATTGG 60 NA Rattus norvegicus 81 Gabrg3 ENSRNOG00000014862 ENSRNOT00000019971 3 1 1 80 1 112253489 112253507 GCGGCTCTATCAGTTTGAC 59 112202478 112253448 ATGACAACATAATCACCTGCAG 59 NA Rattus norvegicus 81 Araf ENSRNOG00000010838 ENSRNOT00000039911 2 1 1 80 X 1388085 1389112 GACTCATCAAAGGAAGAAAGACAG 60 1388028 1388046 CCTCCACAATGAGCTCCTC 60 NA Rattus norvegicus 81 Brk1 ENSRNOG00000010184 ENSRNOT00000013600 2 1 1 81 4 145559277 145559295 GAACCGGGAGTACATTGAG 58 145559337 145573277 ACGACAAGACATATCGAAAGAG 58 NA Rattus norvegicus 81 Nrde2 ENSRNOG00000004004 ENSRNOT00000005369 3 1 1 80 6 124157828 124157850 GGACAGATAAGAAACCAGATCCT 60 124156046 124157789 CCTTCCTCTTGTACCTTGCT 60 NA Rattus norvegicus 81 Gas2 ENSRNOG00000016717 ENSRNOT00000022499 1 1 2 80 1 107295022 107295040 GCCAATTTCCTCTCCTGGT 60 107295084 107305643 CTTATGCAGAACCAGGCCT 60 NA Rattus norvegicus 81 Tctex1d1 ENSRNOG00000023100 ENSRNOT00000038410 2 1 1 87 5 122508477 122512581 AGAGAACAACGTTTCTGTCTG 59 122512630 122512648 TTCCATCCGGACTTGAAGG 59 NA Rattus norvegicus 81 Malt1 ENSRNOG00000017181 ENSRNOT00000068418 2 1 1 80 18 61156465 61156484 AAGTATAGTCCACAAGCCAC 57 61156523 61158581 GGATCAATATCTAGGTCAAGAGG 58 NA Rattus norvegicus 81 B3galt6 ENSRNOG00000019979 ENSRNOT00000027060 1 1 1 60 5 173424820 173424838 CCAGTAGATGTGCAACGAG 58 173424778 173424797 AGCCTCGAGATTTGTACTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grina ENSRNOG00000029941 ENSRNOT00000059599 2 1 1 81 7 117306888 117306996 ATCTTCTCCATGCAGACCC 59 117307041 117307059 CGAAGATGAAGAGCACCAC 59 NA Rattus norvegicus 81 Gigyf2 ENSRNOG00000023577 ENSRNOT00000064965,ENSRNOT00000076099 2 2 3 85 9 94432049 94453581 TTTGAACAGGTTTCTCCACAC 59 94453626 94453646 GCCCAAAGTTTAGTGTCTGTG 60 NA InUTR Rattus norvegicus 81 Aass ENSRNOG00000039494 ENSRNOT00000060530 2 1 1 80 4 50167017 50168109 TTGTCATCAGCTTGTTGCC 59 50166955 50166976 CAGTGACCATATTAACCTTGCT 59 NA Rattus norvegicus 81 Timm8a2 ENSRNOG00000013835 ENSRNOT00000018486 3 1 1 106 15 108453378 108453396 TTTGAATCGACTGGAGCAC 58 108453466 108456290 AAGGAACAGGGATCTTCCT 58 NA InUTR Rattus norvegicus 81 Sult1d1 ENSRNOG00000001960 ENSRNOT00000072483,ENSRNOT00000060179,ENSRNOT00000080114 1 3 3 80 14 22107566 22108806 CCAAATCTGGAACAACTTGG 57 22108849 22108867 CATCCCGCTTACACTTCTC 58 NA Rattus norvegicus 81 Ms4a7 ENSRNOG00000020953 ENSRNOT00000028443,ENSRNOT00000091506 2 2 2 80 1 227498800 227503795 GTTCTTGGGACTATCCAGC 58 227498738 227498756 GTTGGAGTAGGAAGCTGAC 58 NA Rattus norvegicus 81 Pparg ENSRNOG00000008839 ENSRNOT00000082969,ENSRNOT00000051858,ENSRNOT00000012137 2 3 3 80 4 147361934 147372231 GTCTCACAATGCCATCAGG 59 147372273 147372293 TCGATATCACTGGAGATCTCC 58 NA Rattus norvegicus 81 Ten1 ENSRNOG00000060307 ENSRNOT00000083022,ENSRNOT00000086382 1 2 3 85 10 105085654 105085673 CCTGGGACCTATTACTTCCC 59 105085719 105086530 AGATACAACCTGCCAAATGTC 59 NA Rattus norvegicus 81 Mkrn2 ENSRNOG00000009176 ENSRNOT00000013146 1 1 1 83 4 147525391 147527107 ACGAGAAGATGTGTATGTCG 58 147527153 147527171 TACTGCACACTTTGTCCTG 58 NA Rattus norvegicus 81 Mkrn2 ENSRNOG00000009176 ENSRNOT00000013146 3 1 1 84 4 147525391 147527108 ACGAGAAGATGTGTATGTCGA 59 147527153 147527172 ATACTGCACACTTTGTCCTG 58 NA Rattus norvegicus 81 Olr1582 ENSRNOG00000046512 ENSRNOT00000040596 3 1 1 60 13 91712383 91712407 CTCTAAGGTATTCGGTTATTATGGG 59 91712424 91712443 AGTGACCCAGATGCTAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Serpina3m ENSRNOG00000009921 ENSRNOT00000013175 1 1 1 80 6 127811657 127813435 CTCTTTAGAGGCAAATGGAAGG 59 127811598 127811616 AGACCTCTTCTCATCCACG 59 NA Rattus norvegicus 81 Olr505 ENSRNOG00000053395 ENSRNOT00000079710 2 1 1 60 3 73779809 73779829 GAATCAAGGCTACAAACACCC 60 73779769 73779789 CAAGGTCAGTAGTAGCAAGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp1r12a ENSRNOG00000004925 ENSRNOT00000080285,ENSRNOT00000050037,ENSRNOT00000006773,ENSRNOT00000041473 3 4 4 80 7 51465093 51465114 CACACCTTTAGATATTGCAGAG 57 51453394 51465053 TCTATATCAACACCTTGCCG 58 NA Rattus norvegicus 81 Dmc1 ENSRNOG00000013807 ENSRNOT00000018526 3 1 1 80 7 120836042 120836060 TCGGGATTCCAAGATGAGG 59 120833801 120835192 AATATCAGCCATGTTGATTCCG 59 NA Rattus norvegicus 81 Prmt5 ENSRNOG00000012046 ENSRNOT00000016302 1 1 1 80 15 33159279 33159974 CACTTCCTGAAAGATGATGGTG 59 33159220 33159242 GTACAACTTCGAGGAAGAAATGG 60 NA Rattus norvegicus 81 AABR07002938.1 ENSRNOG00000037415 ENSRNOT00000056615 2 1 1 91 1 89871256 89871274 AAGGCCTTGACTTGGAGAC 60 89871180 89871205 CCTTCTCTTGAGATGTTCATCTC 59 NA Rattus norvegicus 81 Lrtomt ENSRNOG00000023434 ENSRNOT00000039564 3 1 1 81 1 166987834 166987854 ATCCTCACAACTCTAGACCAC 59 166987080 166987797 GCATCAGAATCTGACCTTTAATAGG 60 NA Rattus norvegicus 81 Rn60_13_0880.2 ENSRNOG00000051363 ENSRNOT00000076743 3 1 1 60 13 83034266 83034287 CATGATCTGAAAGATGTGAGGC 60 83034227 83034245 GAGCAACTTCATGGCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wdr77 ENSRNOG00000016394 ENSRNOT00000076654,ENSRNOT00000086279,ENSRNOT00000022571 2 3 3 80 2 208585458 208586208 TTCTGAGGTGTTTAGAAGTCG 58 208586247 208586268 GTAAGAAGGGAGTGATTGAGTG 59 NA Rattus norvegicus 81 Mafg ENSRNOG00000036697 ENSRNOT00000054970 3 1 1 113 10 109807522 109807621 CCTTAAAGGTGAAGCGGGA 60 109807427 109807445 CTTCCTTGGATAGGCCTCG 60 NA Rattus norvegicus 81 Slc6a1 ENSRNOG00000006527 ENSRNOT00000009705 3 1 1 80 4 146283552 146284008 AATGTGTACAGGGACTCCA 58 146284051 146284070 GATGGAGAAGATGACGAAGC 59 NA Rattus norvegicus 81 Zfp276 ENSRNOG00000016631 ENSRNOT00000022324 2 1 1 80 19 56058243 56059293 GTGACCTTTCTGAGGGAGAC 60 56059336 56059354 CAAAGGACTCATCCGAGGA 59 NA Rattus norvegicus 81 Dus1l ENSRNOG00000047905 ENSRNOT00000073956,ENSRNOT00000086042 2 2 2 80 10 109976655 109976993 CAAAGAATGATTCTGTTGGCTC 58 109976596 109976616 CTTGTCAATCTCTGGGAAGAC 59 NA Rattus norvegicus 81 Hoxd1 ENSRNOG00000001572 ENSRNOT00000002140 1 1 1 60 3 61686372 61686703 AAAGCAAACTGTCCGAATATGG 60 61686724 61686742 CTGAAATTCGTGCGGATGG 60 NA DesignNoJunction Rattus norvegicus 81 Lsm5 ENSRNOG00000042126 ENSRNOT00000065625 3 1 1 111 4 87017931 87017951 CTTGTGGACAAGTGTATAGGA 57 87017592 87017861 CATCTTCCAACACCATATTGAC 58 NA Rattus norvegicus 81 Selp ENSRNOG00000002794 ENSRNOT00000003759 3 1 1 80 13 82456372 82456391 CTGGGATCTCGAAATGTGGA 60 82456431 82457543 AAGTGATGTTACACCTTTGCAG 60 NA Rattus norvegicus 81 Cd177 ENSRNOG00000022669 ENSRNOT00000051619 1 1 1 80 1 82967097 82972848 CTCGGTCAAATTCTCTGACCT 60 82967037 82967055 TCCACTCGACAGCTTTCTC 60 NA Rattus norvegicus 81 Lrrc63 ENSRNOG00000038291 ENSRNOT00000079097,ENSRNOT00000058294 2 2 2 80 15 57166039 57169058 GTTCGTATAGTACAAACAGGCTC 59 57165981 57165999 CACTAAAGCGCTTTCCTCG 59 NA Rattus norvegicus 81 Ceacam20 ENSRNOG00000019260 ENSRNOT00000026060 1 1 1 80 1 80897281 80897299 AACCCAAAGGAGAGGACAG 59 80897767 80899614 GTGGCTTCTTCTCATAGAAGTG 59 NA Rattus norvegicus 81 Prss30 ENSRNOG00000033266 ENSRNOT00000034340 3 1 1 89 10 13350779 13350929 ATATTGCATTCAGGTGCTGG 59 13350709 13350727 TTTCTCTGTCCTCAGGCTG 59 NA Rattus norvegicus 81 Cmpk1 ENSRNOG00000007775 ENSRNOT00000010318,ENSRNOT00000081051 1 2 2 81 5 133763559 133763577 AACAAGACCATGGATGGGA 59 133762288 133763517 GACATCGGTCAATACAGATCTC 59 NA Rattus norvegicus 81 Unc93a ENSRNOG00000047027 ENSRNOT00000073581 2 1 1 80 1 53580951 53582279 GAGTATACCAAGTCTTATGTGACC 59 53580894 53580912 AGTCATAGCCGAGAAGCAG 59 NA Rattus norvegicus 81 Cux1 ENSRNOG00000001424 ENSRNOT00000059486 3 1 1 80 12 23233147 23233166 CAAGATGAGAGCGAACAGTC 59 23233209 23310155 GCGTAAATCCTCTGGAGTG 58 NA Rattus norvegicus 81 Gtf2f1 ENSRNOG00000047134 ENSRNOT00000073683 3 1 1 81 9 10036979 10036997 TACAATTTCACACCGCTGG 59 10037042 10038479 GGACCTTGTTCCTCCTCTC 59 NA Rattus norvegicus 81 Slc9a7 ENSRNOG00000004150 ENSRNOT00000005623 1 1 1 80 X 2612531 2612549 CACTAACCACCACTCTCCC 59 2612590 2614268 GCTCTTGGTTATCATACACCTG 59 NA Rattus norvegicus 81 Accsl ENSRNOG00000042533 ENSRNOT00000068585 1 1 1 80 3 82766410 82766429 GGCTACCACCATAGTGTCTC 60 82764572 82766372 CACCTTATTGATCCACTCTTTGTC 60 NA Rattus norvegicus 81 Casc3 ENSRNOG00000009716 ENSRNOT00000013204 2 1 1 80 10 86740010 86740236 ATGATCCACTGCAGTTCCA 59 86740280 86740298 GTACAATCATGCCCTGTGG 59 NA Rattus norvegicus 81 Tmem151a ENSRNOG00000049951 ENSRNOT00000075365 2 1 1 60 1 220375196 220375214 ACAGGTCTACCATGAGAGG 58 220375154 220375173 TGCACTGTAGTCAAACTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fubp1 ENSRNOG00000043370 ENSRNOT00000066199 1 1 1 80 2 257435224 257435353 TACAAAGTTCAGCAAGCCA 58 257435396 257435415 ATACTCATTCCGCACTTCTC 58 NA Rattus norvegicus 81 RGD1565767 ENSRNOG00000023181 ENSRNOT00000032528 2 1 1 60 3 57191711 57191731 TTATCCTCATTGATCCATCCC 57 57191671 57191689 GCGATCCATTGAGTGTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ftmt ENSRNOG00000014988 ENSRNOT00000020109 2 1 1 60 18 47294697 47294715 GTATTTCCTTCGCCAGTCC 58 47294737 47294757 CTGCAGTCTCATAAGCTTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1559459 ENSRNOG00000042714 ENSRNOT00000065079 3 1 1 80 14 22942539 22945443 TCCACAGAAGGTTCTTTGGA 59 22945485 22945504 GGGATCCATTTGTACAGACG 59 NA Rattus norvegicus 81 Prpf19 ENSRNOG00000020897 ENSRNOT00000028373 1 1 1 80 1 226952902 226954814 TTCATCCTTCTCAGGAATTGGT 60 226954855 226954873 CACAAGAAGTGTTCGGGAC 59 NA Rattus norvegicus 81 Mcm9 ENSRNOG00000003281 ENSRNOT00000004499 1 1 1 80 20 34922490 34925173 GCCAGGATATCAGGTTTGC 59 34922428 34922446 TAAGAAGTGTCCCACGTCC 59 NA Rattus norvegicus 81 LOC100361079 ENSRNOG00000002340 ENSRNOT00000003180 3 1 1 60 1 89258624 89258726 CAAGTTTATCAAGAAGAGGGTGG 60 89258586 89258604 CAGCTCCTCCCTCTTTCTC 59 NA DesignRelaxed Rattus norvegicus 81 Nap1l1 ENSRNOG00000003890 ENSRNOT00000005286 3 1 1 80 7 54233181 54233199 TGGGACAGTTCGTACTGTG 59 54233242 54233382 TTCTCAGGAACTTCAGGAGG 59 NA Rattus norvegicus 81 Cenpa ENSRNOG00000032178 ENSRNOT00000012512 3 1 1 92 6 27075655 27075674 GAGATTCCTGTGGCTTAAGG 58 27075187 27075600 ATTTCTCTTACCACGAGGC 57 NA Rattus norvegicus 81 AABR07051533.1 ENSRNOG00000038274 ENSRNOT00000045492 3 1 1 60 3 16495787 16495807 CTTCATATTCCTGCTGCTCTG 59 16496013 16496031 AGACTGGGTCATCACAGTG 59 NA DesignNoJunction Rattus norvegicus 81 Pde4a ENSRNOG00000020828 ENSRNOT00000061100 2 1 1 80 8 22223156 22223174 AAGCTTGAACACCAACGTC 59 22223215 22225222 CTCAAGTTCTCCAGTTCTTGTG 59 NA Rattus norvegicus 81 Car13 ENSRNOG00000021323 ENSRNOT00000038546 2 1 1 81 2 88284215 88290539 GTATCAGCTCTCAACAGTTGG 59 88284154 88284172 TTGCTTAACAGGAAAGCCG 59 NA Rattus norvegicus 81 Lingo3 ENSRNOG00000032569 ENSRNOT00000046059 2 1 1 60 7 11746553 11746571 CTTCTGCTTTCTGCTGCTC 59 11746592 11746613 GAAGTTATTCTTGTGCTGTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Snrnp40 ENSRNOG00000012219 ENSRNOT00000016325 2 1 1 80 5 148585934 148585953 GAACTCCTGTTATCCAGCCA 60 148585994 148594293 ATGTCCCAAAGCTTAACTGTG 59 NA Rattus norvegicus 81 Rpl35a ENSRNOG00000031641 ENSRNOT00000042285 2 1 1 60 5 164923400 164923419 TTATGCCCGAGATGAAACTG 58 164923439 164923460 TGCTTTGTACACATAAGCACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam110a ENSRNOG00000050946 ENSRNOT00000084722 3 1 3 253 3 147480811 147480831 GAATAGTGACCAGAAAGGCTC 59 147477881 147477899 TAGCCTTATCAGCCTCCAG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1564552 ENSRNOG00000045917 ENSRNOT00000050803 2 1 1 60 17 84704798 84704819 GCAAGTTAAAGGCAAGATTCTG 59 84704759 84704778 GTGTTCGATGTGCTCAATCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc24a4 ENSRNOG00000006729 ENSRNOT00000089840,ENSRNOT00000088089,ENSRNOT00000008886 2 3 3 80 6 126140936 126140954 ATGGTCACCTTCATCACGG 60 126140994 126146549 GTATCCAATAATAGTCACCAGCC 59 NA Rattus norvegicus 81 Ist1 ENSRNOG00000015144 ENSRNOT00000020365 3 1 1 83 19 41987402 41989609 CAGATTGTTGGACCCAAGC 59 41989656 41989674 CTCTGGCAGTACAAAGGTG 58 NA Rattus norvegicus 81 LOC100360516 ENSRNOG00000050808 ENSRNOT00000073056 2 1 1 61 15 29728629 29728744 GGGATAAACTTTCTCCTGAGAG 58 29728589 29728607 ACATGAGCATCAGGTTGAG 58 NA DesignNoJunction Rattus norvegicus 81 Kcnh3 ENSRNOG00000057315 ENSRNOT00000086611 3 1 1 82 7 140896964 140897077 CAAGGTCAATGTGTACGTTGG 60 140897120 140897139 GGTCCAGTCTTGGTAGTAGG 59 NA Rattus norvegicus 81 Eda ENSRNOG00000032208 ENSRNOT00000076977 1 1 1 60 X 69730769 69730787 CAGGAGAAGATCCACTCCC 59 69730810 70131329 AAATTCAGGAGTGCCATCTG 58 NA DesignRelaxed Rattus norvegicus 81 Zfp951 ENSRNOG00000037421 ENSRNOT00000048419 1 1 1 80 14 6358614 6358632 TGGATCCTTCCCAGAAGAG 58 6358355 6358571 CCCAGTAAGAGCCTATAGCA 58 NA Rattus norvegicus 81 AABR07068042.1 ENSRNOG00000037894 ENSRNOT00000057584 3 1 1 199 9 78969039 78969058 TATATGGGACAGTCCCTTCC 58 78969221 78972831 TTACATCATTCTGGCGGGA 59 NA Rattus norvegicus 81 LOC364343 ENSRNOG00000049182 ENSRNOT00000072418 2 1 1 91 15 30802335 30802448 TTTCTTCTGAGAGTTGCCCA 59 30802502 30802520 TTGCATTTCAGCTGCAGAG 59 NA Rattus norvegicus 81 Gpr37 ENSRNOG00000002524 ENSRNOT00000003593 3 1 1 80 4 51842548 51842568 GTCATCTTCCATGAGTTGACC 59 51823501 51842508 AGAAGCTACCTCGATATAGGG 58 NA Rattus norvegicus 81 Myo7a ENSRNOG00000013641 ENSRNOT00000019053 1 1 1 80 1 163006072 163006811 AAATCGCAGATAAGGTCATCAG 59 163006013 163006033 TCTTTATCCAGTCTGTCAGGT 58 NA Rattus norvegicus 81 Spata18 ENSRNOG00000002120 ENSRNOT00000002899 3 1 1 80 14 37091433 37091451 ACTTTGAGACCGCAGTCTC 60 37089349 37091391 GGATCACATCATTGACACTGC 60 NA Rattus norvegicus 81 Calcrl ENSRNOG00000054695 ENSRNOT00000088170,ENSRNOT00000078645 1 2 2 80 3 71792419 71798390 CTTAATATGGCTCTCATCGCAG 59 71792360 71792382 CATGATCTTGTTCCTAGTGACTC 59 NA Rattus norvegicus 81 Znrf2 ENSRNOG00000049057 ENSRNOT00000072271 2 1 1 80 4 85075744 85075762 TTGAAGAATTGCAGCAGGG 59 85075805 85082230 ACCATTCATCTATGCAGCCT 59 NA Rattus norvegicus 81 LOC688321 ENSRNOG00000045751 ENSRNOT00000071293 2 1 1 80 10 109952002 109952025 GAGTCTACAAAGGAGATCTTTGAC 59 109952143 109952256 CTTGGCTACTATCTGGGATACC 60 NA Rattus norvegicus 81 Lilrb3l ENSRNOG00000053260 ENSRNOT00000087669,ENSRNOT00000087957 3 2 4 80 1 64011621 64011715 ACCAGAAGAGGTCAAACCC 59 64011987 64012008 CATCCTTAGTTTCCATGTCCTC 59 NA Rattus norvegicus 81 LOC680875 ENSRNOG00000023828 ENSRNOT00000014191 2 1 1 80 7 117185879 117186161 GAGCTTCTCACTAGTGACC 57 117185817 117185836 TGACTCAGTCAGCTTTACAC 58 NA Rattus norvegicus 81 Cfap54 ENSRNOG00000029837 ENSRNOT00000005492 3 1 1 80 7 33858684 33859044 CATTGCTACGTCAAGGACTC 59 33858623 33858641 CAGGTCCATTGTGTAGCTG 58 NA Rattus norvegicus 81 Apol9a ENSRNOG00000023410 ENSRNOT00000031951 1 1 1 60 7 118928781 118928799 GTATCAAAGGCCAAGTTGC 57 118928276 118928294 GATCCCTCAGTGCTTTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Apol9a ENSRNOG00000023410 ENSRNOT00000031951 2 1 1 60 7 118928780 118928799 GTATCAAAGGCCAAGTTGCC 60 118928276 118928294 GATCCCTCAGTGCTTTGTG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1310495 ENSRNOG00000000589 ENSRNOT00000000720 2 1 1 80 20 45122562 45123857 ACCCACTCCCTTTCTTTCC 59 45122500 45122521 TAGAACATAGGTTCCGATGGAC 60 NA Rattus norvegicus 81 LOC687104 ENSRNOG00000050455 ENSRNOT00000008475 2 1 1 60 3 78271291 78271312 AGACACTTATGTTATTGGCCTC 58 78271252 78271271 GATGATGACACAAATTGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mif ENSRNOG00000006589 ENSRNOT00000008608 1 1 1 72 20 13732611 13732629 CAACTACAGCAAGCTGCTG 60 13732665 13732805 GTTGATGTAGACCCGGTCC 60 NA DesignRelaxed Rattus norvegicus 81 LOC687110 ENSRNOG00000031645 ENSRNOT00000042026 3 1 1 60 3 78279087 78279108 CAATGTACTTCTTCCTTGCCTC 59 78279048 78279069 GAGAAGGCAGTGGAATAAACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptprcap ENSRNOG00000021724 ENSRNOT00000029607 1 1 1 117 1 219404000 219405342 CATCGGATCAATGGCTCTG 59 219405423 219405441 GATGGTGACCACATTGGAG 58 NA InUTR Rattus norvegicus 81 Thoc5 ENSRNOG00000008456 ENSRNOT00000011281 3 1 1 80 14 85143979 85143997 CTTGCCAGGAGCTACAGAG 60 85144040 85144933 CTATTTCAATGGCCACGTCC 59 NA Rattus norvegicus 81 Olr1664 ENSRNOG00000052917 ENSRNOT00000089221 1 1 1 60 17 45801993 45802012 TCTTTGCTTCAATCAACCCT 58 45802034 45802053 TGTCTACCTTGTTGTTTCCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1608 ENSRNOG00000012522 ENSRNOT00000016693 2 1 1 60 15 27001680 27001699 GCATCATTGTGGTCATTGTC 58 27001639 27001659 AGCAGGAAGTACATAGCAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Styxl1 ENSRNOG00000023366 ENSRNOT00000046343 1 1 1 80 12 23968600 23974929 GACGACTCTGAACTCTTACC 58 23974972 23974990 GATATAGACAGGTTGGCGG 58 NA Rattus norvegicus 81 Olr324 ENSRNOG00000021070 ENSRNOT00000028604 1 1 1 60 1 228537225 228537243 ATTGTCCCTGTCCTGAACC 59 228537183 228537201 TGGCTGACTTCATCTCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fbxl22 ENSRNOG00000017684 ENSRNOT00000023810 2 1 1 88 8 72204347 72204365 ATGATTTCCTCCTGCAGGT 59 72202049 72202067 TAAGCAGTCATCCGTGACG 60 NA DesignNoJunction Rattus norvegicus 81 AC123280.1 ENSRNOG00000033141 ENSRNOT00000049690 2 1 1 91 15 61875343 61875380 GGATCATTTCAGGCATCCC 58 61875270 61875289 TAGAGCTACACTGTTTCCGG 59 NA Rattus norvegicus 81 Fignl1 ENSRNOG00000004440 ENSRNOT00000005857 3 1 1 104 14 91901803 91901824 GGTCATAATCAGCAGAGTTCTC 59 91898557 91898575 ATTCTTCTGCCAGTCATCC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Adprm ENSRNOG00000003397 ENSRNOT00000004560 1 1 1 80 10 53585531 53586724 TCCTCAAGGACTTTCTGAGC 60 53585470 53585489 ACTTCGTTCAACCAGTTCAG 59 NA Rattus norvegicus 81 Bcl11b ENSRNOG00000005776 ENSRNOT00000088421 3 1 3 81 6 131912783 131912804 CGATGAAGATGACCATCTACTG 59 131838871 131912742 GGAAGGCTCATCTTTACCTG 58 NA Rattus norvegicus 81 Ahi1 ENSRNOG00000013969 ENSRNOT00000019076 3 1 1 80 1 16530054 16530073 AAGGGTGAAACAGTCATTCG 59 16530115 16561951 ATGCTGATAAATGCCGTCTG 59 NA Rattus norvegicus 81 Olr694 ENSRNOG00000006415 ENSRNOT00000008396 3 1 1 60 3 78112617 78112636 CATTGTCCTCACCATCTCCT 59 78112576 78112597 AGTGAGAAAGAAGTACATGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itfg2 ENSRNOG00000006264 ENSRNOT00000064215,ENSRNOT00000084173,ENSRNOT00000064174 3 3 3 81 4 161734324 161734710 CACAGGAGACAGTAGGGAG 59 161734261 161734280 AACGTTCTTGTTGTGGATCC 59 NA Rattus norvegicus 81 Atp10d ENSRNOG00000002312 ENSRNOT00000003146 3 1 1 80 14 38514271 38515963 TGTAGCAAAGAAGGTCATGAG 58 38514211 38514229 TTGTCGATGCTGGTTTCTG 59 NA Rattus norvegicus 81 Olr838 ENSRNOG00000050363 ENSRNOT00000051234 1 1 1 60 5 59292892 59292910 TTGTCTTGCTGGGATTGTC 58 59292850 59292868 AGGATGAGCACGAAGAAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910429 ENSRNOG00000004588 ENSRNOT00000006050 3 1 1 81 7 129749872 129781987 GGAGGGCATAGGTAATACAG 57 129782031 129782049 GCAGACTTCTTCCTCTTCC 58 NA InUTR Rattus norvegicus 81 Olr851 ENSRNOG00000052071 ENSRNOT00000082758 3 1 1 60 5 69577661 69577680 CAAAGCCCAAGGTTAAAGAC 57 69577620 69577638 ATGAGAGCCTCCATCACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aanat ENSRNOG00000011182 ENSRNOT00000015221 2 1 1 116 10 105569875 105569893 CCTCAGAGTTCCTAGGCTG 59 105569973 105570861 CTGAGATAAAGGCTTCGCG 59 NA Rattus norvegicus 81 Osbpl6 ENSRNOG00000010812 ENSRNOT00000091211,ENSRNOT00000068199 3 2 2 80 3 63424305 63431723 TGTCACAGGCACTTAACCA 59 63431764 63431785 CGTGATCACAAATGGTAGACTC 59 NA Rattus norvegicus 81 AABR07050399.1 ENSRNOG00000055770 ENSRNOT00000072167 3 1 1 60 5 163773906 163773924 GGGTTCAGATGAGGACAGG 60 163773946 163773966 ATTAACTCATCCTTCTGGGCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apeh ENSRNOG00000029572 ENSRNOT00000045410 1 1 1 80 8 116868967 116868985 TCGCATCGTCTACCTACAG 59 116868442 116868924 TTGGTGTACCAGTCGTACAG 60 NA Rattus norvegicus 81 Gin1 ENSRNOG00000011962 ENSRNOT00000016028,ENSRNOT00000087355 3 2 4 80 9 111210939 111210958 AGAACCCTCACTCTAGTGGA 59 111208982 111210898 CTGACAAGCATATACCCACTG 59 NA Rattus norvegicus 81 Rps29 ENSRNOG00000032542 ENSRNOT00000046690 2 1 1 60 3 147490551 147490570 AAATACGGGCTGAACATGTG 59 147490510 147490528 TGAAGCCTATGTCCTTCGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Traf3ip1 ENSRNOG00000024468 ENSRNOT00000056612,ENSRNOT00000081992 1 2 2 80 9 98645449 98645468 CTAGCCAAGATAAGCTGGAG 58 98645511 98645930 GCCGAGGTATTCTTCTGAG 57 NA Rattus norvegicus 81 Nsrp1 ENSRNOG00000022502 ENSRNOT00000030749 3 1 1 85 10 63128567 63130452 CTTTCGTGAAGCCAGAACTG 60 63130500 63130518 TCTGCTGTGGTCTGTTCTC 59 NA Rattus norvegicus 81 Olr336 ENSRNOG00000021078 ENSRNOT00000028617 2 1 1 60 1 229417208 229417226 TACCTGTGCCTCTCATCTG 59 229417248 229417268 ATAGACAAACAGTCCTGATCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909473 ENSRNOG00000054359 ENSRNOT00000077211 2 1 1 60 4 87828293 87828311 GTGGTCATATACTGGGTGG 57 87828331 87828353 CATACATCCATAACAGGACTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1645 ENSRNOG00000039434 ENSRNOT00000060427 1 1 1 60 15 28934777 28934798 CACTCCATATCTTTCACCTCAC 59 28934738 28934757 CAATCTCATCAGGACCACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf165 ENSRNOG00000048824 ENSRNOT00000075580 2 1 1 80 18 73839953 73839973 ATCAGCATTACCTAGCAACTC 58 73837705 73839914 GAATTTCATGGACAACCATCTG 58 NA Rattus norvegicus 81 Usp11 ENSRNOG00000009049 ENSRNOT00000051956 2 1 1 80 X 1689277 1689582 AGAACCCTTGGTATTGCTC 57 1689215 1689234 GAACTTCAGGTAGCATCCAG 58 NA Rattus norvegicus 81 Wdr26 ENSRNOG00000003723 ENSRNOT00000005059 2 1 1 80 13 99509679 99509697 GTCCAGATGACAGCTACCT 59 99506753 99509637 ATTCTCCCGTTTGTACATTCC 58 NA Rattus norvegicus 81 Olr217 ENSRNOG00000050569 ENSRNOT00000041974 2 1 1 60 1 170915185 170915204 AACCCACTCATTTACAGCCT 59 170915144 170915164 CCAGAACCCTTATTAAAGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tas2r134 ENSRNOG00000027510 ENSRNOT00000030442 2 1 1 60 3 37147804 37147822 GCCTGGGAAGTGATAACCT 59 37147845 37147864 TGCTTAGTGTCAGAATGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wbscr27 ENSRNOG00000046700 ENSRNOT00000074851 3 1 1 86 12 24772557 24774485 ACCCTAAAGGGACCTTTGAC 59 24772490 24772508 TTAGGAGCTCAGGTATGGC 59 NA Rattus norvegicus 81 LOC100912759 ENSRNOG00000049264 ENSRNOT00000071062 3 1 1 60 13 100189321 100189339 AGATTGAGATGACACTGGC 57 100189279 100189298 GCATACAGCAGAAGAATGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dmrt2 ENSRNOG00000016301 ENSRNOT00000067372 1 1 1 152 1 243664363 243665790 CCACAGAGGACAAGAAGGG 60 243668007 243668026 TCCCTCCTAGGTAAGTCTCG 60 NA Rattus norvegicus 81 Rab5c ENSRNOG00000018568 ENSRNOT00000030344 2 1 1 80 10 88623554 88623573 AACAGTTTGCTGTTCATGGA 58 88623059 88623511 AAGCTTCTTAGCTATCGCC 57 NA Rattus norvegicus 81 Olr224 ENSRNOG00000029766 ENSRNOT00000047239 1 1 1 60 1 171044559 171044577 CACACCCATGCTTAATCCC 59 171044517 171044536 GATTGCATCCTTGACTTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07016863.1 ENSRNOG00000057795 ENSRNOT00000074803 3 1 1 113 15 2532621 2535250 CTAAAGAGGATGGACTCGCT 59 2535326 2535344 CAGCAATCGCTGTAGTGAG 59 NA Rattus norvegicus 81 LOC100362808 ENSRNOG00000047490 ENSRNOT00000050604 2 1 1 83 1 75194601 75194788 ATATTGCAGTTCTGTCTTGGTG 59 75194832 75194850 ATACTGAGGCCTGAAGACG 59 NA Rattus norvegicus 81 Hrasls5 ENSRNOG00000023528 ENSRNOT00000032123 3 1 1 93 1 222907820 222908314 CAACCTACAAATGACTCAGCG 60 222908369 222908387 TTCGGGCCTGTTCTAATCC 60 NA Rattus norvegicus 81 Btg2 ENSRNOG00000003300 ENSRNOT00000004408 3 1 1 87 13 50915484 50916746 ACTGACCGATCATTACAAACAC 59 50915418 50915436 CATCTTGTGGTTGATGCGG 60 NA Rattus norvegicus 81 Tsx ENSRNOG00000002925 ENSRNOT00000003922 2 1 1 80 X 74274457 74275075 TCTGATCTGGATGACGCTG 59 74276332 74276352 TTGAAGAATATCTTGCAGGCG 59 NA Rattus norvegicus 81 Rpa2 ENSRNOG00000013005 ENSRNOT00000017549 1 1 1 80 5 150957429 150959062 AGAAGAAATCAAGAGCCCGA 59 150959104 150959123 CCTCATCAGTCAGAGTAGCA 59 NA Rattus norvegicus 81 Impact ENSRNOG00000045844 ENSRNOT00000073771 2 1 1 80 18 4338620 4340326 CATTGACCAGGTGAAGAAGG 59 4340369 4340387 TAGGCGTAGATGTTGTGGG 59 NA Rattus norvegicus 81 LOC654482 ENSRNOG00000043410 ENSRNOT00000068290 1 1 1 80 8 6223072 6223093 AGTATGAAGATGTGCTAAAGCC 59 6220624 6223032 GAGGATGTTTCCGAACACTC 59 NA Rattus norvegicus 81 Grxcr1 ENSRNOG00000038891 ENSRNOT00000059439 1 1 1 86 14 41722348 41785643 TGTTACAGCAACCATCAGC 59 41722280 41722298 TCTCAAAGGTCGTCCTCAC 59 NA Rattus norvegicus 81 Mir146a ENSRNOG00000035466 ENSRNOT00000053589 1 1 1 60 10 28962516 28962536 GGTTATAGCAATGTCAGACCT 58 28962476 28962495 ATGACGATAGAGCTATCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir146a ENSRNOG00000035466 ENSRNOT00000053589 2 1 1 60 10 28962516 28962536 GGTTATAGCAATGTCAGACCT 58 28962476 28962496 ATGACGATAGAGCTATCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acly ENSRNOG00000016924 ENSRNOT00000023447,ENSRNOT00000043172,ENSRNOT00000077579 2 3 3 80 10 88410810 88413058 ATGAACTATGCACAGATCCG 58 88410749 88410767 CTTCTTGATGAGCTTCCGT 58 NA Rattus norvegicus 81 Recql5 ENSRNOG00000005107 ENSRNOT00000007246 2 1 1 80 10 104444429 104444447 ACTTGTTCAAGGGCTTTGC 59 104444260 104444385 CCTCTTCCTTCACACTCCT 58 NA Rattus norvegicus 81 Olr6 ENSRNOG00000045783 ENSRNOT00000072404 1 1 1 60 1 70481120 70481139 CAAGCCCATGTACTTCTTCC 59 70481160 70481180 GACAGACACATAGCACATCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gdpd4 ENSRNOG00000028470 ENSRNOT00000034886 3 1 1 80 1 162969461 162969593 TAGAATAGCTGCAGACACCA 59 162969636 162969654 TAACGCCGATGATAATCGC 58 NA Rattus norvegicus 81 Vezt ENSRNOG00000006514 ENSRNOT00000030015 1 1 1 80 7 34922674 34925523 AGTCCTACAGAAACAAGGCA 59 34922613 34922637 TTCTTACTGTACTGAGAGGAAAGAG 60 NA Rattus norvegicus 81 Tmod2 ENSRNOG00000010447 ENSRNOT00000014124 2 1 1 80 8 82509614 82509633 TACCAGTTTACCAAGCAAGG 58 82507154 82509572 TCTCTTCTTGCGAACTAGGT 59 NA Rattus norvegicus 81 Gpr25 ENSRNOG00000008603 ENSRNOT00000011368 3 1 1 73 13 53137221 53137240 AGTCCTGGAATTCTAGCTGG 59 53137167 53137185 CTCTACTTGGTCCAGGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-Bb ENSRNOG00000032708 ENSRNOT00000079126 2 1 5 60 20 4046574 4046593 TAGAACTTGTTGTAGGCCAG 57 4046615 4046634 CACTCAGGAGGTAGAGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-Bb ENSRNOG00000032708 ENSRNOT00000079126 3 1 5 60 20 4046575 4046593 AGAACTTGTTGTAGGCCAG 57 4046617 4046635 GCACTCAGGAGGTAGAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr485 ENSRNOG00000009747 ENSRNOT00000012912 3 1 1 60 3 73542908 73542932 CACTTAGACTCGAAACTACATACTC 59 73542872 73542893 CCGTGATTGATAAATGTCTCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pcdhgb7 ENSRNOG00000039454 ENSRNOT00000060461 2 1 1 60 18 30901704 30901722 ACTCAAGTCAGAGCATGGG 59 30901746 30901764 TGATGGAGTAGGAGACGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Msmp ENSRNOG00000043023 ENSRNOT00000068105 3 1 1 90 5 59085329 59085562 TACTTCCAAGCTCAAGCTCC 60 59085258 59085277 AGGTACAATGGAAGCAGTCC 60 NA Rattus norvegicus 81 Hyal4 ENSRNOG00000007212 ENSRNOT00000009458,ENSRNOT00000084706 3 2 2 86 4 52162193 52162211 CATAGGAGAAAGTGCTGCG 59 52162261 52164310 TTTGTACAGTTCTCCGCAG 58 NA Rattus norvegicus 81 St3gal2 ENSRNOG00000017932 ENSRNOT00000024248 1 1 1 80 19 43277994 43280086 GGACAGATCCGATTCACCT 59 43277527 43277545 GGCTGGGTTGTAAATCTGG 59 NA Rattus norvegicus 81 Usp54 ENSRNOG00000027012 ENSRNOT00000083467,ENSRNOT00000029615 1 2 2 80 15 4183286 4183304 TTCAAAGACTCCAACAGCA 57 4183346 4187313 ACGTTTGATGAATCCTGAGAG 58 NA Rattus norvegicus 81 Fbxo15 ENSRNOG00000038225 ENSRNOT00000058199 1 1 1 80 18 81874503 81874525 GAGAACACCTACCTCTTATTGGA 59 81874562 81882438 CAAAGCAACTCTCAATAAAGCC 59 NA Rattus norvegicus 81 Dag1 ENSRNOG00000019400 ENSRNOT00000026327 2 1 1 97 8 116985261 116992793 ATTATCAAGGTGTCTGCAGC 58 116985183 116985201 TCAGTGTCAAGAGGAAGGC 59 NA Rattus norvegicus 81 Efna2 ENSRNOG00000016203 ENSRNOT00000021709 3 1 1 97 7 12383056 12383266 TCCAACCAATGAGACCCTG 59 12382977 12382996 CTGTAGTGAGGAAGAGGTGG 59 NA Rattus norvegicus 81 Smo ENSRNOG00000008332 ENSRNOT00000011356,ENSRNOT00000080223 1 2 2 80 4 57038557 57039561 CTATGTGCTATGCCAAGCC 59 57039605 57039623 GGCCGATTCTTGATCTCAC 58 NA Rattus norvegicus 81 Sorcs1 ENSRNOG00000011313 ENSRNOT00000015979 1 1 1 80 1 270057053 270057336 AGTTGCATCAGGTAACATAGG 58 270056993 270057011 CAAGTGTTCCCTGCATCTG 59 NA Rattus norvegicus 81 Tarbp2 ENSRNOG00000042355 ENSRNOT00000064661 3 1 1 91 7 144125351 144125691 CATTGAGATTGGCAGTGGG 59 144125746 144125764 CATCCAGAGGTACCGTGTG 60 NA Rattus norvegicus 81 Olr1630 ENSRNOG00000012515 ENSRNOT00000016683 1 1 1 60 15 26939420 26939441 GAGCCAGTTATCATTTACTGTC 57 26939381 26939401 AAAGCTGTCTACTTCATTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1615 ENSRNOG00000049936 ENSRNOT00000046583 2 1 1 60 15 27243591 27243610 CTTCTCCTTGGGTTCTACAG 57 27243632 27243651 AAGGTAACGATCAAATGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RT1-CE16 ENSRNOG00000047706 ENSRNOT00000049540 2 1 1 60 20 3791655 3791675 CTGTGATCATTGTAGCTGTGG 59 3791438 3791634 TTTCCACCTGTGTTTCTCCT 59 NA DesignNoJunction Rattus norvegicus 81 Slc16a3 ENSRNOG00000036677 ENSRNOT00000086096 1 1 2 115 10 110138605 110144867 CGTAACAGGTGAAACCAGC 59 110144946 110144964 GAAACAGCCAAAGAGGACG 59 NA InUTR Rattus norvegicus 81 Olr24 ENSRNOG00000050054 ENSRNOT00000042931 1 1 1 60 1 150100528 150100549 TCTGTGTTGTGATCTCTTACTG 58 150100489 150100510 TTAGTGGTAGGAATCTTCAGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Def8 ENSRNOG00000000264 ENSRNOT00000000281 1 1 1 81 19 56250098 56250116 AACAAACCTGCGACAAGTG 59 56250161 56251221 CAGCGGTAATAACACCCTG 58 NA Rattus norvegicus 81 March6 ENSRNOG00000011066 ENSRNOT00000028561 1 1 1 80 2 84564961 84564982 AGTTGTGGTAGAAATTGGAGTG 59 84563752 84564923 GTAGCATCAAACATTTCCAGAG 58 NA Rattus norvegicus 81 Abhd3 ENSRNOG00000029370 ENSRNOT00000041878 1 1 1 80 18 1894940 1894958 GAAGTCGGTGGGAATTCCA 60 1893206 1894898 GTTTCTATTGGGATAGCGTGG 59 NA Rattus norvegicus 81 Sik3 ENSRNOG00000045931 ENSRNOT00000073507 3 1 1 80 8 50490115 50490136 CTCAATGATGAGGTTCTCTTGG 59 50490175 50490431 GGCATCCGATCTTAATGACTG 59 NA Rattus norvegicus 81 Cebpd ENSRNOG00000050869 ENSRNOT00000074586 2 1 1 71 11 89008726 89008744 GAACGAGAAGCTGCATCAG 59 89008779 89008797 TCTTTGAAGAACTGCCGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab27a ENSRNOG00000052499 ENSRNOT00000083957 1 1 1 80 8 79761642 79765744 CGAAACTGGATAAGCCAGC 59 79765786 79765806 TAGGTCACTCTTATTTCCGCA 59 NA Rattus norvegicus 81 RT1-A3 ENSRNOG00000059770 ENSRNOT00000048076 1 1 1 60 20 3791764 3791784 CCCTTCATTTCCTGTACCTG 58 3791719 3791737 GGTTTCCATGTTGGAGTCG 59 NA DesignNoJunction Rattus norvegicus 81 Ssbp3 ENSRNOG00000007920 ENSRNOT00000011408 2 1 1 80 5 126640466 126646466 GGTCTAACTTTCCAATGGGTC 59 126646508 126646526 ATCCATTCATGTGGTGTGG 58 NA Rattus norvegicus 81 Odf4 ENSRNOG00000004225 ENSRNOT00000005667 2 1 1 80 10 55511499 55511798 CTGAGCTTCTGTGAAGTCAC 59 55511438 55511457 CTTCTTCAGCTCGTAGATCC 58 NA Rattus norvegicus 81 LOC688130 ENSRNOG00000036830 ENSRNOT00000055274 2 1 1 90 7 145060817 145060835 TACAATGCCTGTCATGTGG 58 145060593 145060763 TAAGTGGCTCATCATCGAC 57 NA Rattus norvegicus 81 Wdr19 ENSRNOG00000002932 ENSRNOT00000003991 2 1 1 80 14 44722058 44722077 GCTTCTACCTCATGTCTCCT 59 44720889 44722015 GCTTCTTTGTACCTTCCGT 58 NA Rattus norvegicus 81 LOC102553180 ENSRNOG00000048674 ENSRNOT00000027402 3 1 1 60 18 29952067 29952088 ATAAAGGAACTCCCTCCATGTC 60 29952106 29952127 TTTACATCCAGGACTTTCACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102553012 ENSRNOG00000042322 ENSRNOT00000067185 2 1 1 60 18 30832071 30832091 ACAATGCTCCTGTATTCACTC 58 30832112 30832131 ACAGGCAAATTCTCCTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc6a3 ENSRNOG00000017302 ENSRNOT00000079987,ENSRNOT00000040291 1 2 2 80 1 32328464 32329759 TGCTTCCTCCTGTATGTGG 59 32328402 32328421 CCAGTCTGGGAAGATGTAGG 59 NA Rattus norvegicus 81 Masp1 ENSRNOG00000001827 ENSRNOT00000047678,ENSRNOT00000002507 3 2 2 80 11 80771223 80772105 CTACAAAGTGCTAAAGGATAACGAG 60 80772141 80772161 ATCTTGTTACTCCATGCACCA 60 NA Rattus norvegicus 81 Slc6a15 ENSRNOG00000027468 ENSRNOT00000029208,ENSRNOT00000090641 2 2 2 80 7 45372137 45372157 ACATTGCCTCTGTTAATCGTG 59 45372193 45379108 GTCTTCTAGAAACTTATCTATGCCG 59 NA Rattus norvegicus 81 Eif3d ENSRNOG00000005804 ENSRNOT00000029753 1 1 1 80 7 119197060 119197791 GGTACACAAACAAGTATTCCTCTC 60 119197003 119197021 GGAAGCTCGTCTCATCCTC 60 NA Rattus norvegicus 81 Olr70 ENSRNOG00000015673 ENSRNOT00000020981 3 1 1 60 1 168160787 168160805 CTCCTTTACAACAGCAGCC 59 168160745 168160764 CCAGATCTTGAAAGCCTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp566 ENSRNOG00000048138 ENSRNOT00000074582 3 1 1 80 1 88416577 88420428 CTTTCAATGGTCCTGGAGTC 58 88416516 88416535 CTGCGCCATTTCTATCTCAC 59 NA Rattus norvegicus 81 Zar1 ENSRNOG00000026150 ENSRNOT00000030610 2 1 1 80 14 37761181 37761200 CTATCACTGCAAAGACTGCA 58 37761036 37761138 TTGAAGTACACCTTGCTGG 58 NA Rattus norvegicus 81 Gsx2 ENSRNOG00000002266 ENSRNOT00000003080 1 1 1 187 14 35652159 35652177 TCACCATCACCACCATCAG 59 35651314 35652008 TATCTGAGCCTCCCATGGT 60 NA Rattus norvegicus 81 RGD1311345 ENSRNOG00000019232 ENSRNOT00000061249 3 1 2 95 17 6688532 6688550 GTTTGCTGACTACAGGCTG 59 6688606 6689006 AGCATTTCTCCTTCTAGAAGCT 59 NA Rattus norvegicus 81 Nicn1 ENSRNOG00000049083 ENSRNOT00000082452,ENSRNOT00000071540 2 2 2 99 8 117065067 117065515 CTGTTCAAGCACCAGATGC 60 117065578 117065596 CCTCCACGGAGAAAGACAG 60 NA Rattus norvegicus 81 Gng4 ENSRNOG00000047080 ENSRNOT00000070807 1 1 1 74 17 90290083 90290101 AGCTGAAGATGGAAGCCTG 60 90269524 90269542 CTTCACAGTAGGCCAGGAG 60 NA DesignNoJunction Rattus norvegicus 81 AABR07018165.1 ENSRNOG00000013433 ENSRNOT00000017939 3 1 1 60 15 44442715 44442735 ACACAGTCAACAGAACAACAG 59 44442675 44442695 ATGTCCCTTAGAATGGAAACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pank4 ENSRNOG00000014044 ENSRNOT00000019028 2 1 1 81 5 172375382 172375401 TCTTCCTGAGACATGAAGGC 60 172375440 172375729 CTGTACTGGTTAGGATTATCTTGC 59 NA Rattus norvegicus 81 Chd1l ENSRNOG00000017669 ENSRNOT00000043937 3 1 1 80 2 199739728 199741089 CTATATGGATTACAGAGGGTACAG 58 199739671 199739689 TTCTTAATGGCCAGGTGTC 57 NA Rattus norvegicus 81 Tex37 ENSRNOG00000006476 ENSRNOT00000008473 2 1 1 101 4 98728719 98731713 AGAGTCACACCACAAGAGC 60 98728636 98728655 ATACCCATCCTCCAGTTTGG 59 NA DesignNoJunction Rattus norvegicus 81 Tmem248 ENSRNOG00000000893 ENSRNOT00000058725,ENSRNOT00000086175 3 2 2 85 12 29935041 29936720 ATTGTCCCAGATGACGACC 60 29934974 29934994 AACATCGTTATCACCATCACG 59 NA Rattus norvegicus 81 Mir350 ENSRNOG00000047684 ENSRNOT00000071079 3 1 1 64 13 43827514 43827532 TAAAGTGCACGTGCTTTGG 59 43827560 43827578 AGGGTGAAAGTGTATGGGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sfr1 ENSRNOG00000012641 ENSRNOT00000088962 3 1 2 90 1 267495953 267495971 GAAACCAAGTGCATGGGAG 59 267496025 267507115 GTGTCCCACTCATAGGCTG 60 NA Rattus norvegicus 81 Vom1r8 ENSRNOG00000051757 ENSRNOT00000080437 3 1 1 60 1 60117809 60117829 TTTAAGGAACATGGCAGTTGG 59 60117848 60117869 TCCCAGAATACCAAGTGTACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pex11b ENSRNOG00000021216 ENSRNOT00000028811 1 1 1 80 2 198763932 198770181 TTCCTTCAGGTACTATCTCTTCTC 59 198770220 198770238 TCTTGTTCCATCAACAGGC 58 NA Rattus norvegicus 81 Pex11b ENSRNOG00000021216 ENSRNOT00000028811 3 1 1 81 2 198763932 198770181 TTCCTTCAGGTACTATCTCTTCTC 59 198770220 198770239 CTCTTGTTCCATCAACAGGC 59 NA Rattus norvegicus 81 Nrf1 ENSRNOG00000008752 ENSRNOT00000080173,ENSRNOT00000011851 1 2 2 80 4 57387257 57391441 GGTTGCTTCGGAAACTCAG 59 57391483 57391503 GTGAGATGCAGAGAACAATGG 59 NA Rattus norvegicus 81 Eif4h ENSRNOG00000001454 ENSRNOT00000050059,ENSRNOT00000081084 1 2 2 85 12 25107575 25108037 AACCCACAGAAGAGGAACG 60 25108085 25108104 GTTGGCTACTTGATTGAGGG 59 NA Rattus norvegicus 81 Prss44 ENSRNOG00000030073 ENSRNOT00000051947,ENSRNOT00000048655 3 2 2 80 8 119085454 119085472 TCTTTCTTGGTACAACCGG 57 119085515 119086674 CACCCTTGATGATCTACCTC 57 NA Rattus norvegicus 81 Olr878 ENSRNOG00000043334 ENSRNOT00000064311 2 1 1 60 7 3499379 3499400 TTCTTTGCCATCTTTCTTGGAG 59 3499340 3499359 GATCGTAAGACATAGCAGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Has1 ENSRNOG00000010994 ENSRNOT00000014824 2 1 1 80 1 59725409 59725427 GGTAGCCTTCAATGTGGAG 58 59724880 59725366 CTGTATAGACCCAGAGGACC 58 NA Rattus norvegicus 81 Caap1 ENSRNOG00000007299 ENSRNOT00000010173 2 1 1 109 5 113500780 113522521 ATCAGTCAGCAAGATACCTG 57 113481469 113481490 CTGAGTACATCACTATCTTCCC 58 NA Rattus norvegicus 81 Tcf25 ENSRNOG00000017023 ENSRNOT00000046155 1 1 1 80 19 56186842 56186862 GCTAAACATGGAAACCCAGAG 59 56186902 56187928 ACTTGCATTAGACTGTTCCGA 60 NA Rattus norvegicus 81 Tcf25 ENSRNOG00000017023 ENSRNOT00000046155 3 1 1 80 19 56187920 56187938 AATGCAAGTGGCAAACTCC 59 56187981 56188706 TCCATTCTCCGAGGATTCTC 59 NA Rattus norvegicus 81 Tmem54 ENSRNOG00000024259 ENSRNOT00000033285 3 1 1 95 5 147291662 147293941 CCATTGTGGTCATCCTTGC 59 147294089 147294107 CCACACTCAGGCTAAACAC 59 NA Rattus norvegicus 81 Gng7 ENSRNOG00000019857 ENSRNOT00000026893 1 1 1 60 7 11625460 11626358 GATCGAACGCATCAAGGTC 59 11626382 11626400 ATGTTGCTCACAGTAGCTC 58 NA DesignNoJunction Rattus norvegicus 81 LOC100362338 ENSRNOG00000033625 ENSRNOT00000043796 1 1 1 60 17 11037621 11037641 TTTATGCCCGAGATGAAACTG 59 11037581 11037601 GCTTTGTACACATAAGCACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Reg4 ENSRNOG00000019046 ENSRNOT00000025821 2 1 1 80 2 200398022 200402916 AAGTCCTGAGTGATATCTTGAGAC 60 200402954 200402973 TCCGGAAGTACCCATAACAG 59 NA Rattus norvegicus 81 Tor4a ENSRNOG00000009369 ENSRNOT00000012406 3 1 1 60 3 2410244 2410262 TAGCCATTGTAGGGTTCCA 58 2410202 2410220 CGTTGTGCATTATCGTCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3571 ENSRNOG00000035523 ENSRNOT00000053646 2 1 1 60 18 2054964 2054988 CCATAGCATTCTATGTTCATATGGG 60 2055004 2055024 AATAGTGCCTACTCAGAGCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910562 ENSRNOG00000045815 ENSRNOT00000073285 2 1 1 60 11 23057866 23057887 TCATGTCCTAGAAATGATGTCC 58 23057827 23057848 TACCAGTGTAACTACAAGTGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gramd1a ENSRNOG00000021106 ENSRNOT00000028660 3 1 1 80 1 89570506 89572675 CGCAAGTTCACAGATGTGAC 60 89570445 89570464 GATGGTGTAGGTCAGGACTC 59 NA Rattus norvegicus 81 Frmd8 ENSRNOG00000020881 ENSRNOT00000028331 3 1 1 90 1 221228107 221228343 ACATAGCCATGGATGAGCC 60 221227887 221227906 AAGACCTCCTCATCATGGAC 59 NA Rattus norvegicus 81 Ccsap ENSRNOG00000017690 ENSRNOT00000023911 3 1 1 96 19 56620604 56620622 GTTTGCCCTTTATGGCTGG 60 56617765 56620547 CTCATGAATCTCATGCACAGAG 59 NA Rattus norvegicus 81 Gpr84 ENSRNOG00000036834 ENSRNOT00000055279 1 1 1 80 7 144935990 144936709 AACCTCAGGTGAGTCTCCA 60 144935928 144935948 TCGATAGCCCAATACAGACTC 59 NA InUTR Rattus norvegicus 81 Bhlhe23 ENSRNOG00000010312 ENSRNOT00000013690 1 1 1 60 3 176281595 176281613 ACTACATCCTCATGCAGGC 60 176281553 176281571 TTGAGATAGGCCACCAAGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pabpc1l2a ENSRNOG00000022267 ENSRNOT00000029100 3 1 1 60 X 73895231 73895249 ATGTCAACTACCAGCAACC 58 73895189 73895208 ACGTCAAAGTTCATGGTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Habp4 ENSRNOG00000019027 ENSRNOT00000025801 3 1 1 81 17 1690422 1690856 GTAGCAGTGATAAAGCAAACAG 58 1690896 1690916 CTAGTGTCTTTACCTGATCCC 57 NA Rattus norvegicus 81 Yeats4 ENSRNOG00000005689 ENSRNOT00000007580 2 1 1 80 7 60289560 60289578 TGCAGCAACTGTTAACCAC 59 60288105 60289519 TCACTTCAAGTTCTGCAAACTC 60 NA Rattus norvegicus 81 AABR07059072.1 ENSRNOG00000050173 ENSRNOT00000070847 1 1 1 81 4 3122792 3122810 CGTTCAGCTGCTTATGCTG 60 3122727 3122748 AAGAGACCTGAACAACCCTC 59 NA Rattus norvegicus 81 Kcnk4 ENSRNOG00000021140 ENSRNOT00000028704 2 1 1 80 1 222184539 222184939 GATTATGTACCAGGCGATGG 58 222184478 222184496 TAGGCCAAACAGGATCCAG 59 NA Rattus norvegicus 81 Tbc1d22a ENSRNOG00000017057 ENSRNOT00000022945 3 1 1 80 7 127189313 127223132 GTACACAGACCAGGAGGAC 59 127223175 127223194 GTATCAGCCTCAATGTTGCG 60 NA Rattus norvegicus 81 Ssmem1 ENSRNOG00000010345 ENSRNOT00000030462,ENSRNOT00000088235 1 2 2 80 4 57830765 57832746 GCTTCACTAAGTAAAGCAAGC 58 57832788 57832806 CAGCACTAGTGAGGAATCC 57 NA Rattus norvegicus 81 Gnptg ENSRNOG00000024455 ENSRNOT00000029674 1 1 1 80 10 14593521 14593539 ACGGGAGGTACAAAGACTG 59 14593371 14593477 TGAGAGTGGGTGGTTTCTG 59 NA Rattus norvegicus 81 Zfp334 ENSRNOG00000019099 ENSRNOT00000033873 1 1 1 60 3 162058326 162058344 CCTTTGAATGTGGCGAGTG 60 162058284 162058302 TGATGTATCGTGAGGGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Smarcad1 ENSRNOG00000006391 ENSRNOT00000008585 3 1 1 80 4 95938498 95939908 CTCAGATTTCTGAAAGGATCCA 58 95939946 95939967 CCTTAGTTGACAAGAGAAACAC 57 NA Rattus norvegicus 81 Rnf222 ENSRNOG00000022964 ENSRNOT00000038454 2 1 1 121 10 55478305 55478323 TAGGAAATGCCTCCACAGC 60 55478406 55481660 TCACTGAGATCCAAGTCTGAG 59 NA InUTR Rattus norvegicus 81 AC124205.1 ENSRNOG00000012595 ENSRNOT00000016814 3 1 1 86 5 140486352 140486378 GGATATGAGTGGATATGCATTGC 60 140486424 140486442 CAGAGTTGCTCTTGTTGCC 60 NA Rattus norvegicus 81 Olfm1 ENSRNOG00000009862 ENSRNOT00000013443 2 1 2 83 3 6790704 6797057 AAGGTGATAACCGGGTCTG 59 6797104 6797122 TCATGAAGTCCACCATGGA 58 NA Rattus norvegicus 81 Pawr ENSRNOG00000005917 ENSRNOT00000008222 1 1 1 80 7 51352559 51352578 AGATCGAGAAGAGGAAGCTG 59 51303198 51352516 ACTCATCTAAGCACTCCGC 60 NA Rattus norvegicus 81 Mb21d2 ENSRNOG00000024040 ENSRNOT00000032569 3 1 1 116 11 75434432 75530657 TTTCCATGCTGGGAATGGT 60 75530734 75530755 TTAACTCATCTAGGTCCAGGTC 59 NA Rattus norvegicus 81 Atp5d ENSRNOG00000014625 ENSRNOT00000077301,ENSRNOT00000020670 3 2 2 178 7 12429862 12429880 AAAGTCCACTGACGTTTCC 58 12428690 12429720 CATCAAAGAACACCTGCGT 59 NA InUTR Rattus norvegicus 81 Slco6c1 ENSRNOG00000013792 ENSRNOT00000077596,ENSRNOT00000077480,ENSRNOT00000018503,ENSRNOT00000081815 1 4 4 80 9 104670007 104670026 GTTTCTGCCTTACCACTTGC 60 104663288 104669969 GGAATTACAAATAGTCCTGTGAGC 60 NA Rattus norvegicus 81 LOC100359671 ENSRNOG00000040039 ENSRNOT00000048888 1 1 1 60 11 29638898 29638918 CCAAATCTAAGAACCACACCA 58 29638858 29638877 TTGATACCATTTCTGTGCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cacna2d2 ENSRNOG00000015835 ENSRNOT00000021218,ENSRNOT00000081242 2 2 2 80 8 116273328 116273347 GTCGTAGTATGATTGACGGA 57 116273387 116273515 CATCTATGTACCTCTCATCCAG 57 NA Rattus norvegicus 81 Tex11 ENSRNOG00000025672 ENSRNOT00000041731 2 1 1 80 X 70730067 70731279 TTACTTGGATACAGCACTCCT 59 70730007 70730028 GCATCATTAACCATAGGATCCA 58 NA Rattus norvegicus 81 Sqrdl ENSRNOG00000000172 ENSRNOT00000089204 2 1 2 188 3 114918711 114920914 AGAGGCATTTCTACCAGCC 60 114921066 114921620 TTGAAACCCTGTGGGTCTC 60 NA Rattus norvegicus 81 Vdac1 ENSRNOG00000006375 ENSRNOT00000008477 3 1 1 81 10 37747317 37749156 TACTAATGTGAATGATGGGACG 58 37749198 37749216 GAGATTGACAGCAGTCTCC 58 NA Rattus norvegicus 81 Olr1514 ENSRNOG00000033267 ENSRNOT00000048167 3 1 1 60 10 61044816 61044835 TGGCTAACTTCTACTGTGAC 57 61044775 61044793 AAGCGAATGTCAGAACAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gabra5 ENSRNOG00000010803 ENSRNOT00000083894,ENSRNOT00000014573 3 2 2 81 1 112863306 112863325 CTCCAGACTCAACCAGTACC 60 112859815 112863266 GATTGTATATTCACCTGTGCTGG 60 NA Rattus norvegicus 81 LOC691015 ENSRNOG00000043512 ENSRNOT00000068656 2 1 1 60 1 177592035 177592054 TCTGAACAATCTGAGTGCTG 58 177591994 177592014 TTTGCTGCTTAGCACATTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dmrtb1 ENSRNOG00000023213 ENSRNOT00000057341 1 1 1 88 5 127269919 127269937 ATTCATCCTCTGCTCTGGG 59 127268910 127269869 TTCTGACACCAAGCTATTTCC 58 NA Rattus norvegicus 81 Igh-1a ENSRNOG00000048402 ENSRNOT00000045874 3 1 1 81 6 138092877 138093004 CACAAATGCCCAGTTCCTG 59 138092814 138092834 AGATCAAGAGGATGTCCTTGG 59 NA Rattus norvegicus 81 Slc5a10 ENSRNOG00000002616 ENSRNOT00000032092,ENSRNOT00000078422 1 2 2 80 10 47981017 47983601 CTGACCAGGTTATTGTGCAG 59 47980956 47980974 GGTAGCTGGCTAGAATGGA 59 NA Rattus norvegicus 81 Slc6a13 ENSRNOG00000012876 ENSRNOT00000079744,ENSRNOT00000018083 2 2 2 80 4 153909021 153909323 GACTAGACAGCCAGTTTGTG 59 153909366 153909384 TCTTCTTACGGAACACCCG 59 NA Rattus norvegicus 81 Hspb11 ENSRNOG00000010241 ENSRNOT00000057362,ENSRNOT00000080701 1 2 2 80 5 126864663 126864683 AAGGGACAGAAGTGATTCTGG 60 126864725 126876025 AGGTTTCTGGATTCCCGTC 59 NA Rattus norvegicus 81 Gabra2 ENSRNOG00000002349 ENSRNOT00000064779,ENSRNOT00000003197 2 2 2 80 14 39748293 39748312 GCTCACAATATGACAATGCC 58 39748355 39749980 GACTGTAAGCCTCATGGTG 58 NA Rattus norvegicus 81 rno-mir-344b-2 ENSRNOG00000047759 ENSRNOT00000075350 2 1 1 61 1 121185933 121185952 AGGCTGCTGGTTATATTCCA 59 121185891 121185909 TTAACAGTCGGGCTTTGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igfn1 ENSRNOG00000026087 ENSRNOT00000038874 2 1 1 80 13 52818866 52818884 GAGACCTCAGCAACTCCAG 60 52817305 52818824 TCAGCTTGTTGATCTGTAGCA 60 NA Rattus norvegicus 81 Supt4h1 ENSRNOG00000007845 ENSRNOT00000010448 1 1 1 80 10 75032441 75032951 CTCGTTAGTCAAGACTATAGACCA 59 75032988 75033008 CTGTTGCCCTTCATTTGTAGG 60 NA Rattus norvegicus 81 RGD1564550 ENSRNOG00000032558 ENSRNOT00000042211 2 1 1 60 10 78417196 78417216 GACCCAGTAAGATTAGAGCCA 59 78417238 78417256 GTCTCCAGCTTCTCTTCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Yipf7 ENSRNOG00000002224 ENSRNOT00000003024 2 1 1 80 14 62577400 62594262 TCTATGGATCCAGACAACCAC 59 62577340 62577361 CTGATGACAAGAACATCTCTGG 59 NA Rattus norvegicus 81 Kif2b ENSRNOG00000002535 ENSRNOT00000003421 3 1 1 60 10 79096608 79096628 GTGTACGATCTGCTAAACTGG 59 79096568 79096587 TTTGCTGATTTCCATCCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1373 ENSRNOG00000039760 ENSRNOT00000060989 2 1 1 60 10 12603246 12603265 AACCCTTTCATCTACAGCCT 59 12603286 12603306 TGAGCACTTTCCTTAAAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uhmk1 ENSRNOG00000002941 ENSRNOT00000003950 3 1 1 80 13 88527022 88527043 GAGTGTCAGAAATATGGACCAG 59 88523582 88526984 GTACTCAACAAAGACTTGTCCT 58 NA Rattus norvegicus 81 Gtpbp1 ENSRNOG00000014634 ENSRNOT00000049247 1 1 1 80 7 120938878 120938896 CTGGCACTCAATGTACCTG 58 120938939 120940570 CTTCAGGGTTTCTTGAAGGA 58 NA Rattus norvegicus 81 Tlcd1 ENSRNOG00000012579 ENSRNOT00000016840 1 1 1 80 10 65439984 65440313 TTCATCATGTCATGGCTATGG 58 65440353 65440373 GTAGTGTTAAGACTCCACCTC 58 NA Rattus norvegicus 81 Klrc2 ENSRNOG00000052467 ENSRNOT00000080299 2 1 3 80 4 163440922 163440942 CTGGATTCTTTCGAAAGAGCA 59 163440557 163440880 GCATCTCCGTTATCCTTGG 58 NA Rattus norvegicus 81 Rtkn ENSRNOG00000009022 ENSRNOT00000031964 2 1 1 80 4 114845443 114845583 TTTCAAGAACAAAGGCGATCTG 60 114845619 114845642 ATCTCAGTATCCTGAATCTGTTCC 60 NA Rattus norvegicus 81 Ankrd32 ENSRNOG00000040279 ENSRNOT00000018457 1 1 1 80 2 4102034 4102054 CAAAGAGCGTTACTAATGCTG 58 4101300 4101993 AGCATGGTTTAACTCAAGGA 57 NA Rattus norvegicus 81 Rab3ip ENSRNOG00000005362 ENSRNOT00000007258,ENSRNOT00000081599 2 2 2 80 7 59930889 59930909 AAGCACAGGATTAAACTAGGG 58 59930748 59930848 ACATACAGAAGTGATCCGGT 59 NA Rattus norvegicus 81 Llgl1 ENSRNOG00000003948 ENSRNOT00000005366 1 1 1 80 10 46944001 46945745 GGCTGTCAAGATCTATGGG 57 46945789 46945807 AAATGCATCTGGGTGACAG 58 NA Rattus norvegicus 81 LOC100909593 ENSRNOG00000047854 ENSRNOT00000082321 2 1 2 134 20 3935573 3935591 CATGAGCAGAAGTCAGGAG 58 3936956 3936974 CAGAGTGTGACGGAATGTG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100909593 ENSRNOG00000047854 ENSRNOT00000078036 3 1 2 60 20 3938480 3938499 GACACAGAAATGGCTTGGAG 59 3938520 3938540 CAAGCATGTTTCCCATAAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prr14 ENSRNOG00000018518 ENSRNOT00000055002 3 1 1 80 1 198915584 198915603 TTCAGCAACAAATACGGAGG 59 198915651 198915923 TATTCAAGGCACTGATTGGTC 58 NA Rattus norvegicus 81 Ppp1r14a ENSRNOG00000020676 ENSRNOT00000028070 2 1 1 85 1 87230811 87230830 TGGAATTGGACAGTGAGGAG 60 87231330 87232653 CTGGACGAAGTCCTCTGTG 60 NA Rattus norvegicus 81 Rnps1 ENSRNOG00000008703 ENSRNOT00000010915 3 1 1 80 10 13793022 13793359 TGACCAAGGATCATATCATGGA 59 13793400 13793418 GATGCATCCTTTCCACAGG 59 NA Rattus norvegicus 81 Ccdc81 ENSRNOG00000033733 ENSRNOT00000055488 1 1 1 80 1 154077462 154077481 AAATGACAATGAGAAGCCCA 58 154076994 154077420 ACATAGCACATTTCCTGTCC 58 NA Rattus norvegicus 81 Atp5g2 ENSRNOG00000015320 ENSRNOT00000090051,ENSRNOT00000020676 3 2 2 61 7 144267238 144269423 CTGATCAGGAGCACCTCTC 59 144267195 144267213 GGTCGCTTTAACTCCACTG 59 NA DesignNoJunction Rattus norvegicus 81 Opalin ENSRNOG00000022386 ENSRNOT00000030656 3 1 1 92 1 260326434 260328606 ATATCCGAGAATCCTAGGCAG 59 260326362 260326382 ACTTCCTGAGACAGTCTTCAC 60 NA Rattus norvegicus 81 Fam210b ENSRNOG00000004466 ENSRNOT00000005901 1 1 1 129 3 170360231 170360249 CTAAGCAAATCCCAGCAGC 59 170360342 170361171 ACATGTCTATGCCACTGGA 58 NA Rattus norvegicus 81 Rbm15b ENSRNOG00000014161 ENSRNOT00000018995 1 1 1 60 8 115618632 115618650 GACTTCTCACAGCAGTACC 58 115618590 115618609 GTTCTTCCTCTAACTTGCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpx4 ENSRNOG00000013604 ENSRNOT00000077681,ENSRNOT00000018691 2 2 2 96 7 12517651 12517672 CAGCAAGATCTGTGTAAATGGG 60 12516849 12517594 TTTGATGGCATTTCCCAGC 59 NA Rattus norvegicus 81 Gstcd ENSRNOG00000011669 ENSRNOT00000086303,ENSRNOT00000037154 3 2 2 80 2 238164885 238164904 ATTGTGGATTTCTGCAGTGG 59 238163061 238164691 TATTAATGTGACCTGGCACAG 58 NA Rattus norvegicus 81 Eif4g2 ENSRNOG00000017158 ENSRNOT00000064535 1 1 1 80 1 175888282 175888304 CCAGATAACTATGATTCCTCCCA 59 175888082 175888243 AGACCAAGTTGAGGTGTCTG 60 NA Rattus norvegicus 81 Ptpra ENSRNOG00000021223 ENSRNOT00000055801,ENSRNOT00000080379 1 2 2 80 3 123077815 123077834 GTTGAGCTGAAGAAGGAGGA 60 123077877 123077975 ACTCTTGTTCTCCCTGGTG 59 NA Rattus norvegicus 81 Mpeg1 ENSRNOG00000021084 ENSRNOT00000028622 2 1 1 80 1 228726950 228726969 TGACTGTCATCCATGGGAC 59 228727011 228727031 CCTAGTGCTATGATGACTCCC 60 NA Rattus norvegicus 81 Stx2 ENSRNOG00000000936 ENSRNOT00000001242,ENSRNOT00000037296 2 2 2 80 12 31350044 31350062 AAAGAAGAGCTGGAGGACC 59 31350106 31351201 CTGCTCAATAGCCTTCAGC 59 NA Rattus norvegicus 81 Ifitm7 ENSRNOG00000021674 ENSRNOT00000039434 1 1 1 60 11 34037413 34037431 AATGCCTGAACATCAGCTC 58 34037455 34037473 GCAACCATAGTGGTAACGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bsdc1 ENSRNOG00000008338 ENSRNOT00000011054 1 1 1 81 5 147661944 147664791 GCAGTCAAAGAGAAGTCCAC 59 147664835 147664853 TGTCATGCTGTACCACCTG 60 NA Rattus norvegicus 81 Bsdc1 ENSRNOG00000008338 ENSRNOT00000011054 3 1 1 83 5 147686472 147686492 ACTTTGACTTGGACATGACTG 59 147686535 147688369 ACTCTACATCTTCAAGCTCCC 59 NA Rattus norvegicus 81 Misp ENSRNOG00000010423 ENSRNOT00000013857 3 1 1 84 7 12699203 12700529 AAAGGAGTCGTGGTATGCA 59 12698270 12698288 CTTGTGTCGCTTTACCCTC 59 NA Rattus norvegicus 81 Ttll10 ENSRNOG00000020132 ENSRNOT00000085087,ENSRNOT00000064207,ENSRNOT00000055319 1 3 3 80 5 173479469 173479487 CCAGAGCATTGAGGATGAC 58 173478492 173479425 TGGACATATCTCTGCACCA 58 NA Rattus norvegicus 81 Orc1 ENSRNOG00000008841 ENSRNOT00000012492 3 1 1 80 5 128202917 128202935 AGAGCAGGAGTTCCAAGAC 59 128202976 128203487 CCAGAAATGTACATACACCCTC 59 NA Rattus norvegicus 81 Tdrd9 ENSRNOG00000053631 ENSRNOT00000086594 3 1 1 80 6 136625882 136631144 GGTGATGGAGTTAAGAGTTGAC 59 136631184 136631203 TCCGTAGTTGAATTCCACCC 60 NA Rattus norvegicus 81 Pfas ENSRNOG00000005193 ENSRNOT00000080769,ENSRNOT00000007087 1 2 2 80 10 55577620 55577638 TAGATGGTGGCAAGGACTC 59 55577472 55577576 AAATGACCAGTGACCCAGG 60 NA Rattus norvegicus 81 Smoc1 ENSRNOG00000005998 ENSRNOT00000007947 1 1 1 80 6 104862902 104862920 CAAGTTGTGAGAGTGACGC 59 104862964 104864871 CAGGACAGCCTGGTAACTC 60 NA Rattus norvegicus 81 Olr1204 ENSRNOG00000051111 ENSRNOT00000076868 1 1 1 60 8 40489418 40489437 TAATGTAACAATGCCCACCC 58 40489457 40489478 GATATTGGAAAGGATCAAGGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0735.1 ENSRNOG00000051070 ENSRNOT00000076184 2 1 1 60 X 72561760 72561781 GAGGATATTGATGCCTACAGAG 58 72561721 72561739 CAACAACCACCCATTTCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Robo2 ENSRNOG00000029598 ENSRNOT00000090497,ENSRNOT00000066439 2 2 3 87 11 11516875 11585030 ATTCGGACTGACGGATCTC 59 11516806 11516824 CTCCCTTGGAGACGATGAC 60 NA Rattus norvegicus 81 Lzts3 ENSRNOG00000021231 ENSRNOT00000028835 2 1 1 83 3 123178163 123178505 GCTAGACCAGTGCTCAGAG 60 123178098 123178116 AGGTTCTGCATGGAATGGA 59 NA Rattus norvegicus 81 Stc2 ENSRNOG00000020729 ENSRNOT00000028146 2 1 1 80 10 16545006 16545024 AAATCCAGGGCTTACATGG 58 16545068 16547218 TGATGAATGACTTGCCCTG 58 NA Rattus norvegicus 81 LOC100362687 ENSRNOG00000043109 ENSRNOT00000063929 2 1 1 91 6 142371782 142371801 ACAAAGCATGGTTTACTTGC 58 142371689 142371731 GGAGGTTATTGTCTATTTGTGC 58 NA Rattus norvegicus 81 Mir143 ENSRNOG00000035603 ENSRNOT00000053726 3 1 1 60 18 56971315 56971333 GGTCAGTTGGGAGTCTGAG 59 56971273 56971291 GCTGCAGAACATCTTCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aff2 ENSRNOG00000052572 ENSRNOT00000087617,ENSRNOT00000087990 1 2 2 80 X 153644514 153644532 GCAGTGATGAAGATGACCT 57 153631501 153644470 TTTCAACAGCCTGGTAGAG 57 NA Rattus norvegicus 81 Slc35e2b ENSRNOG00000017075 ENSRNOT00000023097 2 1 1 83 5 173040356 173041713 TCTTCATGGATGTCCCTGTG 60 173041759 173041777 CATCTGTCAGCAGCAACAG 59 NA Rattus norvegicus 81 Mt3 ENSRNOG00000018958 ENSRNOT00000025669 1 1 1 80 19 11324919 11325778 GAACTGCAAGAAGAGCTGC 60 11324857 11324875 TCTTCGCCTTTGCAAACAC 60 NA Rattus norvegicus 81 Gfral ENSRNOG00000032063 ENSRNOT00000052341 1 1 1 80 8 83258276 83261572 ATTATGCAGGACATACTACCG 58 83258216 83258234 CAGGTCTCATCTTCACGAC 58 NA Rattus norvegicus 81 Nkain2 ENSRNOG00000029608 ENSRNOT00000047224 2 1 1 80 1 28126322 28155761 GGACAGCTTTGATTTCATAGG 57 28155802 28155821 GGTTGTAGTTGTAAGTGGGA 57 NA Rattus norvegicus 81 AABR07058968.1 ENSRNOG00000047477 ENSRNOT00000074622 3 1 1 80 7 145574373 145575181 ACTTCTGATACTGCTGATGGA 59 145574313 145574331 AGAGGACTCAGCATCTTGC 60 NA Rattus norvegicus 81 Cebpg ENSRNOG00000021144 ENSRNOT00000028703 2 1 1 60 1 91290903 91290921 CCCATGGATCGAAATAGCG 59 91290861 91290879 TCACAGCCATATTGTTCCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncor2 ENSRNOG00000001004 ENSRNOT00000001334,ENSRNOT00000084236 1 2 2 80 12 36940251 36944016 AAGAAGCAGCAACAGTTGG 59 36944060 36944078 TGATTCTATGGGTGGTGGC 60 NA Rattus norvegicus 81 AABR07062181.1 ENSRNOG00000055455 ENSRNOT00000079951 3 1 1 80 4 163950405 163950423 CAGATGTCAACAAGCCTGC 60 163946769 163950361 AGCTGAAGGAACTTCAGCT 59 NA Rattus norvegicus 81 AABR07065772.1 ENSRNOG00000050859 ENSRNOT00000072338 2 1 1 107 6 140571886 140571988 ATTTCCAAGCTGTGCTCTG 59 140571797 140571815 AGTGAGAACCCAGAGACAG 58 NA Rattus norvegicus 81 Bzrap1 ENSRNOG00000007957 ENSRNOT00000010755 1 1 1 80 10 75056490 75056509 CTGCAGGAAACCAACATGAG 60 75057063 75057084 TAGAGCCTTACGACAACTCC 59 NA Rattus norvegicus 81 Bzrap1 ENSRNOG00000007957 ENSRNOT00000010755 2 1 1 80 10 75056491 75056509 TGCAGGAAACCAACATGAG 58 75057064 75057085 CTAGAGCCTTACGACAACTC 58 NA Rattus norvegicus 81 AABR07065684.1 ENSRNOG00000056043 ENSRNOT00000071714 1 1 2 73 6 139293172 139293300 AAAGGTGTCCAGTGTGAGG 60 139293337 139293355 AGTTTCAGGGACCTTCCAG 59 NA DesignNoJunction Rattus norvegicus 81 Fam102a ENSRNOG00000050834 ENSRNOT00000073087 3 1 1 80 3 11582798 11582816 TGACGCAGATGACATTGTG 59 11582858 11582968 CGAAGGTTACTATCCTCAGTG 58 NA Rattus norvegicus 81 Ythdc2 ENSRNOG00000039241 ENSRNOT00000060098 2 1 1 80 1 182116424 182116442 TTACGAGCCAAGTAGAGCA 59 182116167 182116380 AATCTAAAGCCATCCAGCC 58 NA Rattus norvegicus 81 LOC498368 ENSRNOG00000002191 ENSRNOT00000002982 3 1 1 92 14 46052423 46053140 CAAAGCTATCTCTTTGATCCAG 57 46052352 46052370 TCTGACAGTGTCATCCTCC 58 NA DesignNoJunction Rattus norvegicus 81 Noc2l ENSRNOG00000021392 ENSRNOT00000066561 1 1 1 80 5 173671955 173671976 CAGAGGAATGAAAGAAGGAGGT 60 173672016 173672285 GTGTCTGTGTCTCCATCCTC 60 NA Rattus norvegicus 81 Arrdc3 ENSRNOG00000045649 ENSRNOT00000072849 3 1 1 80 2 8740164 8740182 AGATCCCACCAGTTTCACC 59 8740221 8740567 GAATATCCACGTATACCATTAGCG 59 NA Rattus norvegicus 81 Msx2 ENSRNOG00000018355 ENSRNOT00000024766 2 1 1 267 17 11684015 11684033 CTCATGTCCGACAAGAAGC 59 11687954 11687972 TCTTGTGTTTCCTCAGGGT 59 NA DesignNoJunction Rattus norvegicus 81 Zscan30 ENSRNOG00000030131 ENSRNOT00000039216 3 1 1 83 18 15871798 15873515 GGTAAGATCCTCACCTCAGAC 59 15871394 15871413 AGCTGGAAATTAGAGCTGGA 59 NA Rattus norvegicus 81 Slit2 ENSRNOG00000003840 ENSRNOT00000005477,ENSRNOT00000081601 2 2 2 80 14 66896748 66897952 CTTCGTTTACTGTCTCTACATGG 59 66896690 66896708 GTGTGACAAGGCTGAAAGG 59 NA Rattus norvegicus 81 LOC102555727 ENSRNOG00000029686 ENSRNOT00000052316 1 1 1 80 4 9810504 9810527 TTTGCATCAAAGACGTGATGG 60 9810568 9810587 CCTCATACAGTGGAATGGGT 59 NA Rattus norvegicus 81 Lin28a ENSRNOG00000060320 ENSRNOT00000077165 3 1 1 80 5 152235374 152235392 TCTGTATTGGGAGTGAGCG 59 152233361 152235330 CACAGTTGTAGCACCTGTC 59 NA Rattus norvegicus 81 Degs2 ENSRNOG00000011716 ENSRNOT00000015855 3 1 1 80 6 132595051 132595069 TCAATGTTGGCTACCACGT 60 132592345 132595007 GTGCAATCATCCGTACCAG 59 NA Rattus norvegicus 81 Cox10 ENSRNOG00000024972 ENSRNOT00000034261 3 1 1 81 10 50560737 50560755 AGATGAAGCTTCACACCGA 59 50527530 50560692 GTGCTTACCACAAGAGCTG 59 NA Rattus norvegicus 81 Slc6a5 ENSRNOG00000031662 ENSRNOT00000041950,ENSRNOT00000089693 3 2 2 81 1 105311391 105314763 ACAACTGCTACAGGGACAC 60 105314807 105314826 ACAGAGAAGATGACGAACCC 60 NA Rattus norvegicus 81 Olr1236 ENSRNOG00000050733 ENSRNOT00000035054 2 1 1 60 4 1483249 1483270 CAGCATTCATGTATCTTAAGCC 58 1483287 1483309 GTGGATACTTTGTCTTCATCCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dxo ENSRNOG00000000422 ENSRNOT00000000483 3 1 1 82 20 4518841 4518859 GAACCCAGAAGGTTTCGTC 59 4518905 4519031 AGCCTTCTTGGTCATTCCT 59 NA Rattus norvegicus 81 RGD1309188 ENSRNOG00000009255 ENSRNOT00000012269 1 1 1 230 8 22626174 22626192 AAGTGGTACCACGACAGTG 60 22626465 22626483 CTTGATGCGTCAAGCAAGG 60 NA DesignNoJunction Rattus norvegicus 81 Serinc1 ENSRNOG00000029360 ENSRNOT00000001066 1 1 1 80 20 38969684 38969705 TTCTTTCACTTCATGCTCTTCC 59 38967455 38969643 ACGAGAAGGCTCATACCTG 59 NA Rattus norvegicus 81 Zfp560 ENSRNOG00000048394 ENSRNOT00000071010 2 1 1 83 8 21384108 21384126 TGCAACTTAACACCAGAGG 58 21383624 21384064 GGCTATTTGACAGTTGTATCTC 57 NA Rattus norvegicus 81 Rn60_10_0698.6 ENSRNOG00000030291 ENSRNOT00000040771 2 1 1 105 10 70100735 70100753 GACCAAAGGTGGCATTACG 59 70101016 70101034 TCGACCCTTTCCTTTCCTG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100910885 ENSRNOG00000047782 ENSRNOT00000092095 1 1 2 80 7 118895555 118906307 AAGATTCCTGAGGAGAAATGCT 60 118906348 118906366 GAGCTGCAGGTTCTCTAGG 60 NA Rattus norvegicus 81 LOC100910885 ENSRNOG00000047782 ENSRNOT00000074888 1 1 2 87 7 118965957 118965981 GAGATCTTTGAAGATTCTGATGGAG 60 118966025 118968428 AGGCATCTTCCTCTTTCCTC 59 NA Rattus norvegicus 81 LOC100360654 ENSRNOG00000045963 ENSRNOT00000047422 3 1 1 60 17 42168343 42168361 TCACCTTCAGAAGTCGACC 59 42168384 42168403 ATACTTTCTCTTGCGCTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Farp1 ENSRNOG00000011203 ENSRNOT00000015271 1 1 1 80 15 106621915 106622857 CTACAAATCACACCAGGACAG 59 106622899 106622917 TCAGACTCTGAGGGAATGG 58 NA Rattus norvegicus 81 Cnot3 ENSRNOG00000053234 ENSRNOT00000088502 1 1 1 80 1 64132473 64132497 CAAGTATATGATGTGGTTTCAGAGG 60 64131188 64132436 AAGTAGATGTAGGTGCCCTG 59 NA Rattus norvegicus 81 Kcp ENSRNOG00000021855 ENSRNOT00000050795 1 1 1 80 4 56777629 56777647 GAGTGTGCCAGTCTTTGTC 59 56777468 56777586 ATTTAGGAAACAGCCGTCAC 59 NA Rattus norvegicus 81 Ifna5 ENSRNOG00000031046 ENSRNOT00000049705 3 1 1 60 5 107039686 107039705 CTCAAGCTATCCTTGTCCTG 58 107039645 107039664 TTTGATGTGAAGAGGCTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ifitm5 ENSRNOG00000014923 ENSRNOT00000020023 1 1 1 66 1 213745008 213745574 CTGGTCCACTCTGTCAAGG 60 213744960 213744978 CATACTGCTTTGCAGCCTC 59 NA DesignNoJunction Rattus norvegicus 81 Ifitm5 ENSRNOG00000014923 ENSRNOT00000020023 2 1 1 70 1 213745008 213745574 CTGGTCCACTCTGTCAAGG 60 213744956 213744974 GAGCCATACTGCTTTGCAG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1309036 ENSRNOG00000037298 ENSRNOT00000056420 3 1 1 106 1 100347396 100348425 GAGACTTCGGAGGATTTCAC 58 100347309 100347327 ATATTCTCGTAGCGGATGC 57 NA Rattus norvegicus 81 Park7 ENSRNOG00000018289 ENSRNOT00000091206,ENSRNOT00000024711,ENSRNOT00000087402 2 3 3 80 5 167997448 167998563 GCGAGCTGGGATTAAAGTC 59 167997386 167997406 GGACAAATCACTACATCACGG 59 NA Rattus norvegicus 81 Crispld1 ENSRNOG00000017773 ENSRNOT00000024199 2 1 1 80 5 692157 692176 CCACAACATGAACATCTGGG 59 691456 692114 CACCAATTTCCCTTGGGAG 58 NA Rattus norvegicus 81 LOC684936 ENSRNOG00000033559 ENSRNOT00000041273 1 1 1 60 10 36502265 36502283 TTTGTTCAGAAGTGTGCCC 59 36502223 36502241 GTCCAGTCTTATGCTTGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ost4 ENSRNOG00000008605 ENSRNOT00000077903,ENSRNOT00000011373 3 2 2 84 6 26836482 26836501 CCTCTATCACTACGTGGCAG 60 26836548 26837211 ACTATGTCCTGGAAGCCTG 59 NA InUTR Rattus norvegicus 81 RGD1565317 ENSRNOG00000023182 ENSRNOT00000017230 1 1 1 60 10 66509172 66509191 CCAGATCAAAGCTCATGTGG 59 66509213 66509232 GAGCACGACTTGATCTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065789.2 ENSRNOG00000031918 ENSRNOT00000040523 3 1 1 87 6 141365023 141365122 CTCTTCCTGGTGTCCTATCC 59 141364955 141364973 GAACAGGTGACAGACAGTG 58 NA Rattus norvegicus 81 LOC100910833 ENSRNOG00000006587 ENSRNOT00000009120 1 1 1 80 6 132075826 132075844 AATCAGGTACTGGAGCCAC 59 132074164 132075783 TGCTACATTTCTGCAACAGC 60 NA Rattus norvegicus 81 Pi4k2b ENSRNOG00000003924 ENSRNOT00000005349 2 1 1 80 14 60580508 60580529 GGGAAATGATAATTGGCTAGTC 57 60578139 60580468 TCGATCCAGTTTGATTCCTC 57 NA Rattus norvegicus 81 Atn1 ENSRNOG00000060594 ENSRNOT00000088895 1 1 1 80 4 157274576 157274746 CGACAGAATAAAGACTCGATGTC 59 157274518 157274536 CCTCGATCTCAGCTCTTCC 59 NA Rattus norvegicus 81 Stam2 ENSRNOG00000027447 ENSRNOT00000037857 1 1 1 80 3 38236746 38236766 CTCAGTCTATTCGAAGCTCCA 59 38233738 38236705 GACTGGACTGGGTATGTCTG 60 NA Rattus norvegicus 81 Ptk7 ENSRNOG00000039976 ENSRNOT00000061432 2 1 1 80 9 16705516 16705534 CTACCGTTGCATTGGTCAG 59 16705578 16705821 ATGTCTTCGATCTCTGCCA 59 NA Rattus norvegicus 81 Ctsj ENSRNOG00000046476 ENSRNOT00000038758 2 1 1 80 17 4106726 4106744 TGCACAACAAGGAGAATGG 58 4106785 4106954 ATTCTTCACCAGTTGTATCAGC 59 NA Rattus norvegicus 81 Pdcd2l ENSRNOG00000021119 ENSRNOT00000028674 1 1 1 80 1 90051404 90051422 TAGCAGTGGAGATCCAACG 59 90048223 90051364 CTCCATGAATACCTCAGAATCTG 59 NA Rattus norvegicus 81 Traf3 ENSRNOG00000008145 ENSRNOT00000010906,ENSRNOT00000077770 3 2 2 80 6 135705742 135708652 GGAGAAGAAGGTTTCCTTGC 59 135708692 135708713 CTACATATCTGGTTGTGCAGAC 59 NA Rattus norvegicus 81 Slc7a3 ENSRNOG00000004133 ENSRNOT00000076378,ENSRNOT00000076910,ENSRNOT00000076336 3 3 3 80 X 70974880 70974898 GTGGACCTCATGTCAATCG 58 70974366 70974837 GTCAGGCTGATATCTGAGGA 58 NA Rattus norvegicus 81 Thnsl2 ENSRNOG00000006508 ENSRNOT00000008698 2 1 1 80 4 98981433 98981453 TGTTCAGAAGGGAGACTTCTC 59 98981285 98981393 TTGTAGGGTACCTGAATGTCC 59 NA Rattus norvegicus 81 Thnsl2 ENSRNOG00000006508 ENSRNOT00000008698 3 1 1 80 4 98981433 98981452 GTTCAGAAGGGAGACTTCTC 57 98981284 98981392 GTTGTAGGGTACCTGAATGTC 58 NA Rattus norvegicus 81 Guca1b ENSRNOG00000015623 ENSRNOT00000020950 1 1 2 80 9 15622183 15623992 TGAGAATGGAGACGGTCAG 59 15622121 15622141 TGAAGCATCTTCATTACCCAC 58 NA Rattus norvegicus 81 Guca1b ENSRNOG00000015623 ENSRNOT00000020950 2 1 2 81 9 15622183 15623993 ATGAGAATGGAGACGGTCAG 59 15622121 15622141 TGAAGCATCTTCATTACCCAC 58 NA Rattus norvegicus 81 AABR07065789.1 ENSRNOG00000006333 ENSRNOT00000008333 2 1 1 60 6 141291314 141291335 TGGAACTTGCTATTTCTGATGG 59 141291197 141291215 GTACCAACTGGATCTGTGC 58 NA DesignNoJunction Rattus norvegicus 81 Ube2l3 ENSRNOG00000001862 ENSRNOT00000046159 1 1 1 80 11 88067348 88083070 GCTTATTGTTCCTGACAACCC 60 88083111 88083130 TTGAAGGGATACTCTGCTGG 59 NA InUTR Rattus norvegicus 81 Ccr5 ENSRNOG00000049115 ENSRNOT00000075564 3 1 2 87 8 133197107 133197126 ATCCAAGAGCTTGATGAGGG 60 133197174 133213286 CTGCAATTTGTTTCACACTGG 59 NA Rattus norvegicus 81 Tceb2 ENSRNOG00000004814 ENSRNOT00000087768,ENSRNOT00000006892 2 2 2 80 10 13163197 13166142 TTTCGAGCAGATGACACCT 59 13163135 13163153 TGGCTTCATCACATCTGGA 59 NA Rattus norvegicus 81 Map6d1 ENSRNOG00000001911 ENSRNOT00000058043 1 1 1 86 11 84321457 84325780 GTCTTATAGACAGGAATTCCAAGC 59 84325825 84325843 TGAGTCGTGACAACTCTGG 59 NA Rattus norvegicus 81 AABR07000534.1 ENSRNOG00000048762 ENSRNOT00000072759 2 1 1 67 1 16987937 16989114 GAGACTTTAACCAAGCAAGTG 58 16987890 16987910 TCAGTTTCTTTCTTCAGAGGC 58 NA DesignNoJunction Rattus norvegicus 81 Olr1461 ENSRNOG00000047410 ENSRNOT00000040081 3 1 1 60 10 45160050 45160068 TCTACTTGCTCCTCTCACC 58 45160092 45160110 ACACAAAGCTTCCAGTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hils1 ENSRNOG00000024041 ENSRNOT00000030737 1 1 1 60 10 82776069 82776087 GGACTGTGGCTGATAAGGG 60 82776111 82776129 ACAGCTTTCTTCAAGGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hils1 ENSRNOG00000024041 ENSRNOT00000030737 2 1 1 60 10 82776134 82776153 ATCACAGGGTACAATATGGC 58 82776176 82776194 CTAGATTCTGGAGCACACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mybpc2 ENSRNOG00000019627 ENSRNOT00000067754 3 1 1 80 1 100521023 100521270 CTTTGTCAAAGAGCCTCCA 58 100520961 100520979 GACATTTCCACTCGGTCAC 59 NA Rattus norvegicus 81 Rpp25l ENSRNOG00000059653 ENSRNOT00000082496 1 1 1 60 5 58096487 58096505 CCAGTGAATGTGGCTACCA 60 58096445 58096463 GAACTAGGTATGGAGCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fgf3 ENSRNOG00000020888 ENSRNOT00000028343 2 1 1 80 1 218003169 218003187 CTACCAAGTACCACCTCCA 58 218003231 218004986 TCTCCAGGATGCTATAGGC 58 NA Rattus norvegicus 81 Prp15 ENSRNOG00000005383 ENSRNOT00000007139,ENSRNOT00000007119 1 2 2 114 4 166211719 166211737 AGCTATGCTCAGGAACCAG 59 166213872 166213890 CTTGTTGGTTTCCAGGCTG 59 NA DesignNoJunction Rattus norvegicus 81 RGD1560883 ENSRNOG00000045639 ENSRNOT00000071535 1 1 1 80 2 4340260 4341617 AGCTAAGAAACCCATATTCCTG 58 4341657 4341676 TAGTCCGTAAGCTGAAACTG 57 NA Rattus norvegicus 81 Olr1512 ENSRNOG00000061506 ENSRNOT00000084195 2 1 1 60 10 60998060 60998079 ACTTCTACTGTGACCTTCCC 59 60998102 60998120 TCATTGATCTGGGTGCTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC690468 ENSRNOG00000030747 ENSRNOT00000042661 1 1 1 60 2 199479148 199479166 TAAAGTTCAAGGTCCGCTG 58 199479106 199479126 TTCTCCTTGTCTGTGATAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pnldc1 ENSRNOG00000023140 ENSRNOT00000075858,ENSRNOT00000076225,ENSRNOT00000076545 3 3 3 80 1 48049613 48049634 GTAGGACATAACATGATGACGG 59 48049673 48051107 AAACTGATCGTAGCTTTCTGG 59 NA Rattus norvegicus 81 Stip1 ENSRNOG00000021164 ENSRNOT00000028743 3 1 1 80 1 222275172 222275191 GATAATGAGTGACCCAGCCA 60 222274589 222275132 TTCTTTAAGTGTTCGCTCAGAG 59 NA Rattus norvegicus 81 Rbmxl1 ENSRNOG00000012138 ENSRNOT00000016184 2 1 1 60 19 33084275 33084295 ATTACAGTCATTCCAGTTCCC 58 33084316 33084335 CCATCTCTATCACCATAGCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Elovl2 ENSRNOG00000014702 ENSRNOT00000019756 3 1 1 80 17 21412178 21414557 GATATCCGGGTAGCCAAGG 59 21414598 21414619 AAGAACAAAGAAGATCGTGTCC 59 NA Rattus norvegicus 81 Snrnp35 ENSRNOG00000001060 ENSRNOT00000001402 3 1 1 81 12 37532102 37538324 ACACTTAAGAACATGAGCGAC 59 37532041 37532060 CATCTGTACCATCGATGCTG 59 NA InUTR Rattus norvegicus 81 Olr810 ENSRNOG00000005398 ENSRNOT00000007150 2 1 1 60 4 72403598 72403617 CTCTTTGTCCTGATCTTGGT 57 72403637 72403658 GAAGAATCAGAGAATTTCCCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Il2rg ENSRNOG00000003954 ENSRNOT00000077024 2 1 3 80 X 71168672 71168920 CACCAAATCTGATCTCTTGCTG 60 71168613 71168631 CATTGAACCTCTGGGAGGG 60 NA Rattus norvegicus 81 Prelid1 ENSRNOG00000016410 ENSRNOT00000076622,ENSRNOT00000091320 3 2 2 93 17 9837119 9837137 AGTATTTCCTGGGCCAGAG 59 9836513 9837065 ACATGTTTGCTATAGGGATTCG 59 NA Rattus norvegicus 81 AABR07034729.1 ENSRNOG00000042193 ENSRNOT00000046465 2 1 1 80 11 85263562 85430541 CTTAATTTGTGCTACAGCAGG 58 85430583 85430601 GTTCCACCAGGTAATGTGG 58 NA Rattus norvegicus 81 AABR07024637.1 ENSRNOG00000029131 ENSRNOT00000048001 1 1 1 80 16 9843356 9847303 CTCAACTCATAGAAGGAAGCTC 58 9847343 9847362 GTCTTGGCTGAATCTGTGAC 59 NA Rattus norvegicus 81 Alyref ENSRNOG00000036687 ENSRNOT00000054955 1 1 1 80 10 109772511 109773893 ATATTCAGGAACTGTTTGCCG 59 109772451 109772470 TCCCTAAACTTCGTCCAGAG 59 NA Rattus norvegicus 81 Enpp6 ENSRNOG00000009660 ENSRNOT00000013005,ENSRNOT00000059401 2 2 2 80 16 48341956 48342372 AGTGGATTCAGGAACGAGG 59 48341894 48341914 TCCAGAAGATGTCAGTCATCC 59 NA Rattus norvegicus 81 Gprc5c ENSRNOG00000003144 ENSRNOT00000004256,ENSRNOT00000086924 2 2 2 60 10 103409096 103409116 TTTCTATGGATGAACCAGCCT 59 103411691 103411710 CCATTGTAGCCACTGTAAGG 58 NA DesignNoJunction Rattus norvegicus 81 LOC100910721 ENSRNOG00000057877 ENSRNOT00000073744 3 1 1 60 19 9024517 9024537 CATTTCAATGCACCTTCTCAC 58 9024556 9024577 GTTCTTTGGAAAGAGGAGAAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rrp36 ENSRNOG00000017836 ENSRNOT00000024010 1 1 1 80 9 16624467 16625484 CCTGAAGAAATCTGAGCAGC 59 16625527 16625545 AAACTCTCCAGCTTCTTGC 58 NA Rattus norvegicus 81 Fam53c ENSRNOG00000020261 ENSRNOT00000027499 3 1 1 83 18 27562827 27567170 CAGCTTGTGTCTGAAGGTG 59 27567217 27567235 GTAGCTGAAGTTGAGGCTG 58 NA Rattus norvegicus 81 Pmp22 ENSRNOG00000003338 ENSRNOT00000081415,ENSRNOT00000041606 1 2 2 81 10 49561859 49567298 AAATCCTTGCTGGTCTGTG 58 49567343 49567361 TAGTCGTTGTTGACATGCC 58 NA Rattus norvegicus 81 Mir187 ENSRNOG00000035521 ENSRNOT00000053644 2 1 1 61 18 16390571 16390589 GATCCTCAGGCTACAACAC 58 16390528 16390546 CTGCAACACAAGACACGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 G6b ENSRNOG00000026936 ENSRNOT00000037191 1 1 1 142 20 5055999 5056017 CTAGAGCTGCTACTGAGCG 60 5055722 5055893 GAATACTCGGATCCGTGGG 60 NA Rattus norvegicus 81 Sh2d4a ENSRNOG00000013541 ENSRNOT00000018543 1 1 1 80 16 23085276 23085710 TGGTGGAATATCACAAGGAGG 60 23085216 23085235 GCTTGTCTTGTTGACCACAG 60 NA Rattus norvegicus 81 Atrnl1 ENSRNOG00000017406 ENSRNOT00000023414 2 1 1 80 1 278620751 278620771 ACACTCATAATGACACTTCCC 58 278620810 278629804 CATCACAAGCTATGTCATATGC 58 NA Rattus norvegicus 81 LOC100912436 ENSRNOG00000011399 ENSRNOT00000003628 1 1 1 60 1 8465515 8465533 ACAGACTACGAAGGAGCAG 59 8465473 8465494 ATTCCTCTTTCACCAATGACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir181c ENSRNOG00000035569 ENSRNOT00000053692 2 1 1 67 19 25290297 25290315 GAACTTGCCAAGGGTTTGG 60 25290248 25290266 CGATGGTTTGTCTGAGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kif3c ENSRNOG00000011394 ENSRNOT00000015820 3 1 1 80 6 27794581 27813450 CCAGCTGGAGTGAATAACAG 58 27813492 27813511 AGCATACTGGCTGATAGGTC 59 NA Rattus norvegicus 81 Zfp629 ENSRNOG00000018877 ENSRNOT00000024969 2 1 3 60 1 198899310 198899329 CGGAGATGGGTAACATTCCA 60 198895797 198895819 CTTCCTTCTCTTCATTCTTCTGC 60 NA DesignNoJunction Rattus norvegicus 81 Zfp629 ENSRNOG00000018877 ENSRNOT00000085954 3 1 3 64 1 199060238 199060256 ATACATCTGTGCTGACTGC 58 198895473 198895492 GTATGACTTGGTGCTGAGAC 58 NA DesignNoJunction Rattus norvegicus 81 Vwa1 ENSRNOG00000018338 ENSRNOT00000024897 1 1 1 80 5 173220149 173220167 AAGCACCTACACTTTGTGG 58 173218464 173220106 CTGCATCGCATCAATAATGG 58 NA Rattus norvegicus 81 Elfn2 ENSRNOG00000007934 ENSRNOT00000010609 1 1 1 60 7 119895690 119895710 AAGAACAAGAAGGAGATCGTG 58 119895650 119895668 AGAAGGTGTACTCGGTGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfyve21 ENSRNOG00000012185 ENSRNOT00000063865,ENSRNOT00000082914 3 2 2 83 6 136393197 136394309 CTTGTAAGCGGAGCTACCT 59 136394355 136394374 CTGGTTGTTGGAAAGACGAC 60 NA Rattus norvegicus 81 Slfn13 ENSRNOG00000021412 ENSRNOT00000077261,ENSRNOT00000055963 1 2 2 96 10 70328334 70332639 ATTTCAAGTGTCAGCAGACTG 59 70328258 70328282 CTGGCTTATTAAGTTCTCTAGTCTC 59 NA Rattus norvegicus 81 Mtcp1 ENSRNOG00000024071 ENSRNOT00000033663 2 1 1 109 18 411786 411804 CACTGTGAGGGTGTCTACC 59 411579 411597 CCCAGAGGAACTGGAACTC 59 NA DesignNoJunction Rattus norvegicus 81 Zfp707 ENSRNOG00000043439 ENSRNOT00000078368 3 1 2 80 7 117000763 117001091 TGAATGAACTGGGATGCTG 58 117001135 117001153 ATTTGTCAACCCATGGCTC 58 NA Rattus norvegicus 81 Prr5 ENSRNOG00000012475 ENSRNOT00000016679 3 1 1 80 7 125588664 125595080 CCACCTGGAACAGTATCCA 59 125595123 125595142 TGAGGATGAAGAGCTCTTGG 59 NA Rattus norvegicus 81 Srf ENSRNOG00000018232 ENSRNOT00000061430 2 1 1 80 9 16744687 16744872 GTTCAGCTTCACCAGATGG 59 16744916 16744934 CAAGTTCACCACCTGTAGC 59 NA Rattus norvegicus 81 Nol8 ENSRNOG00000046968 ENSRNOT00000073035 1 1 1 80 17 14568522 14568540 CGGTTCCTGAGAAAGAGAC 58 14568120 14568480 TCCAGAATAAGTCAGAACCAC 58 NA Rattus norvegicus 81 Dvl3 ENSRNOG00000001708 ENSRNOT00000002323 3 1 1 81 11 84059527 84059546 CATTGGCTCCATCATGAAGG 59 84059370 84059484 CTCATTTACCTGCAACAGCA 59 NA Rattus norvegicus 81 Atp2a2 ENSRNOG00000001285 ENSRNOT00000001738,ENSRNOT00000024347 3 2 2 80 12 39590264 39590985 GGATTACAATGAGGCGAAGG 59 39591028 39591046 ATCTTCTCTACCAGGCACG 59 NA Rattus norvegicus 81 Eif4a1 ENSRNOG00000030628 ENSRNOT00000049048 1 1 1 80 10 56275233 56275412 CGTCATCGAGAGTAACTGGA 59 56275172 56275191 TAAATACCACGGAGGAGGGA 60 NA Rattus norvegicus 81 Egln2 ENSRNOG00000020947 ENSRNOT00000028434 3 1 1 93 1 83971101 83971119 GTACGTGAGGCATGTTGAC 59 83970667 83971044 GCCATGCACCTTAACATCC 59 NA Rattus norvegicus 81 Skint1 ENSRNOG00000043194 ENSRNOT00000087012,ENSRNOT00000064863 1 2 2 80 5 131933734 131935458 CAAGGTCACAGCTATAAACTTACG 60 131935494 131935515 GAGTGACATTCCACTATCACAC 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000088389,ENSRNOT00000086685,ENSRNOT00000090697,ENSRNOT00000082455,ENSRNOT00000084099,ENSRNOT00000083308,ENSRNOT00000088253,ENSRNOT00000045144,ENSRNOT00000051837 3 9 18 60 1 43508711 43508731 TCAGAACACTAGGGAACATCC 59 43508753 43527499 TAGCTGGTGGTTAGTTCGA 58 NA DesignNoJunction Rattus norvegicus 81 AABR07065640.1 ENSRNOG00000047622 ENSRNOT00000071078 3 1 1 119 6 138506945 138506963 AATCCCGACTGAGCATCAG 60 138506750 138506866 GATTCTGAAGTGATCTGTGTCTG 59 NA Rattus norvegicus 81 LOC100911859 ENSRNOG00000016141 ENSRNOT00000021589 1 1 1 113 7 144566002 144566020 AGAACACGAATCCCAGCTC 60 144567371 144567389 ATTTCGAATAAGGGCAGCG 59 NA DesignNoJunction Rattus norvegicus 81 Tctn1 ENSRNOG00000028523 ENSRNOT00000030604 2 1 1 80 12 39806355 39808524 AATATGAGTATGGAGCCCTTCTG 60 39808563 39808582 ATGAAGTGAGAGGTGAAGGC 60 NA Rattus norvegicus 81 Olr812 ENSRNOG00000005407 ENSRNOT00000007163 1 1 1 60 4 72480882 72480902 GTGATGATGTCCTATGATCGG 58 72480921 72480942 TGATGACAGAGTATTGTAAGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vps37b ENSRNOG00000001086 ENSRNOT00000001445 1 1 1 87 12 38020316 38020334 CAATCTAACAGCGCTTCCT 58 38020385 38021265 CTGCCATGTTCTCAGTGTC 59 NA Rattus norvegicus 81 Rcor1 ENSRNOG00000049783 ENSRNOT00000073989 2 1 1 60 6 135550403 135550421 GTTATGAGCACTGAGTGGC 59 135550445 135550463 TCTTAACCATACCGAGCGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Itgb7 ENSRNOG00000012208 ENSRNOT00000016642 2 1 1 80 7 143824522 143827113 GGATGCTTACGACAACCTG 59 143824460 143824479 GACTCGAAAGAGATGCTGAC 59 NA Rattus norvegicus 81 Nfil3 ENSRNOG00000011668 ENSRNOT00000015525 1 1 1 176 17 12261220 12274492 CTGGCAACCTTGGATAACC 59 12274632 12274650 TGCATCAGAAAGGACCTCC 59 NA InUTR Rattus norvegicus 81 Alkbh6 ENSRNOG00000047943 ENSRNOT00000080613,ENSRNOT00000071180 2 2 2 64 1 90961116 90961139 CCTCTAATCTACTATGTCCCTGAC 60 90959613 90961094 ACCTGTCGAAGCAAATACTC 58 NA DesignNoJunction Rattus norvegicus 81 Irf2bp2 ENSRNOG00000049900 ENSRNOT00000075292 2 1 1 88 19 59501223 59501241 GTTCAAGAAAGAGCCAGCC 59 59500583 59501172 TCCTTGCAACTGCTTTAGAC 59 NA Rattus norvegicus 81 Arsa ENSRNOG00000012953 ENSRNOT00000017783 3 1 1 93 7 130450115 130450244 ATATTCCCATGACCAGGGTC 59 130450041 130450059 GATGGGAACTAGGCCTTGG 60 NA Rattus norvegicus 81 LOC100911171 ENSRNOG00000025516 ENSRNOT00000042522 1 1 1 80 7 106631413 106631432 AGTCTGGCATCAACTCTTCC 60 106631214 106631372 CCTTCCCACTAGTTGTCTCTG 60 NA Rattus norvegicus 81 Gpr19 ENSRNOG00000007126 ENSRNOT00000009341 1 1 1 93 4 168656606 168656624 CATCCTCCAAAGTCCTGTG 58 168641316 168656551 TTCCTCTTAGTTCTTCATGGG 57 NA InUTR Rattus norvegicus 81 Lhx9 ENSRNOG00000010357 ENSRNOT00000014218 2 1 1 93 13 55870437 55870455 CTGTGAATGTAAGCTGGCC 59 55869175 55870385 AGAGAACCTTCTGTAGTAATCCTC 59 NA Rattus norvegicus 81 Prpmp5 ENSRNOG00000010485 ENSRNOT00000013943 3 1 1 81 4 166016272 166016290 CCTTGCTAGTCCTGAGCTC 60 166014356 166015219 TGCTCTAACTCTAACTGCTGAG 60 NA Rattus norvegicus 81 Scarb1 ENSRNOG00000000981 ENSRNOT00000064276,ENSRNOT00000001299,ENSRNOT00000001301 3 3 3 80 12 36734559 36736088 ACCCTATGTCTACAGGGAG 57 36736131 36736150 CGGTTCTCTATGTAGGACAC 57 NA Rattus norvegicus 81 Fkbp1b ENSRNOG00000047143 ENSRNOT00000071784 3 1 1 81 6 29981936 29985517 CACTACACAGGGATGCTCC 60 29985560 29985580 TGCCAATTCTGAACTTGAAGG 59 NA Rattus norvegicus 81 Ifitm10 ENSRNOG00000020164 ENSRNOT00000078030 1 1 2 88 1 215536557 215536575 CTCAACTTCTGTTGCCTGG 59 215515826 215536505 AGACAGCCTTTCTTCCCTG 59 NA Rattus norvegicus 81 Txnrd2 ENSRNOG00000001890 ENSRNOT00000002593,ENSRNOT00000081972 1 2 2 80 11 86672525 86674249 CAGGAGCATATAGAGGTTTACCA 60 86672467 86672485 GTAGCACTGTGATGCATCC 59 NA Rattus norvegicus 81 Chchd6 ENSRNOG00000060248 ENSRNOT00000088753 1 1 1 80 4 121541574 121541592 TTTAAAGTGTCCAGGGCAG 58 121539901 121541532 CTCCTGTTGGAACTTCTTGAG 59 NA Rattus norvegicus 81 AABR07065815.1 ENSRNOG00000050143 ENSRNOT00000074947 2 1 2 72 6 142676387 142676405 CTCCTGTCAGTAGCTGCAG 60 142635583 142635601 CAGGCTTCACTAGTTCAGC 58 NA DesignNoJunction Rattus norvegicus 81 Rnf2 ENSRNOG00000002454 ENSRNOT00000065944,ENSRNOT00000092053 3 2 2 80 13 68836905 68836923 CACCATGACCACAAAGGAG 59 68836210 68836863 CATTCTTTGTTGCCACTTCTG 58 NA Rattus norvegicus 81 AABR07062219.2 ENSRNOG00000058775 ENSRNOT00000079429,ENSRNOT00000080017,ENSRNOT00000086461 3 3 4 90 4 165176291 165176312 TCCAGACAATTACTGGATTGGA 59 165169861 165176243 GTTTGAGGCAAGTTTAGATGGT 59 NA Rattus norvegicus 81 Ccdc146 ENSRNOG00000012932 ENSRNOT00000017374 1 1 1 80 4 10404874 10404892 CACCGTAATCGAAGAGGAG 58 10404935 10406493 TGAACACCACTTTCATTCCT 57 NA Rattus norvegicus 81 Tmem173 ENSRNOG00000042137 ENSRNOT00000068386 1 1 1 80 18 28530743 28530763 GACACTTGAGGAAATTCTGGC 60 28530301 28530701 CCCTCTTCGGATTCTTGGT 59 NA Rattus norvegicus 81 Tmem173 ENSRNOG00000042137 ENSRNOT00000068386 2 1 1 80 18 28530308 28530711 CTCATTGTCTACCAAGAATCCG 59 28530249 28530267 TTCTTCTTGCCGAATGTGC 59 NA Rattus norvegicus 81 Slc23a1 ENSRNOG00000061695 ENSRNOT00000084372,ENSRNOT00000078202 3 2 2 81 18 28423982 28424000 CTTTGCGTTTCTGGTTCCA 59 28423815 28423941 GTTACCGTAGATCTCCTCTTCTG 60 NA Rattus norvegicus 81 Usp4 ENSRNOG00000054863 ENSRNOT00000083046,ENSRNOT00000085609 3 2 2 80 8 117140434 117140454 CAACACCTATGAGCAGTTGAG 59 117140494 117140644 TCAATTACTAGCACCTGACCC 60 NA Rattus norvegicus 81 Mtx3 ENSRNOG00000023837 ENSRNOT00000061761 2 1 1 80 2 22430053 22430075 TGAATAGGATTCTCTTGACGAGG 60 22430113 22430230 TGGCATCTCTGTATATCTGGG 59 NA Rattus norvegicus 81 Klk11 ENSRNOG00000018742 ENSRNOT00000025055 2 1 1 81 1 99712271 99713918 TTATCTACAGAACCCAGGGA 57 99713962 99713980 GAGCAAGTGCAATGAATCG 58 NA Rattus norvegicus 81 RGD1311558 ENSRNOG00000018350 ENSRNOT00000085778,ENSRNOT00000064463 3 2 2 80 1 280146534 280150070 AGATAGCAGTAGTCCTACCG 58 280146473 280146493 GTTACACTGGATACAGAACCC 58 NA Rattus norvegicus 81 Arid3a ENSRNOG00000026435 ENSRNOT00000089009,ENSRNOT00000026708 2 2 2 95 7 12580008 12580026 CAACAAGAAGCTGTGGAGG 59 12579102 12579951 TACTTCATGTACTGTGTCCGA 59 NA Rattus norvegicus 81 Tmem63b ENSRNOG00000019743 ENSRNOT00000026728 2 1 1 80 9 17719079 17719099 GAGAAAGTGAATGAGAAGCCC 59 17719138 17719293 GTCCTTTAGGATGATTGCTGTG 60 NA Rattus norvegicus 81 Rps25-ps2 ENSRNOG00000051314 ENSRNOT00000076376 2 1 1 60 20 5078522 5078543 GCTACTTGGTAAAGGACTTAGG 58 5078563 5078582 GGTATCAACTACTTGGGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem121 ENSRNOG00000005174 ENSRNOT00000006872 1 1 1 60 6 137997549 137997567 GTGGCTACGCTATGATCCT 59 137997588 137997609 AAATAGAGCTTGATCTCCAGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptpdc1 ENSRNOG00000026564 ENSRNOT00000060550,ENSRNOT00000089140 2 2 2 80 17 16370050 16370069 ATGACATTTGCCTTACAGGA 57 16370111 16372544 ACATGCTATTAGCACACCTG 58 NA Rattus norvegicus 81 Ptpdc1 ENSRNOG00000026564 ENSRNOT00000060550,ENSRNOT00000089140 3 2 2 80 17 16370053 16370073 ACATTTGCCTTACAGGAAGGA 60 16370111 16372547 GTAACATGCTATTAGCACACCTG 60 NA Rattus norvegicus 81 Apobec4 ENSRNOG00000028089 ENSRNOT00000036906 1 1 1 80 13 70157671 70164332 CTGGAGACAAAGCTGATCTG 58 70164373 70164393 ACTGTGGGTTAGATACTCCTC 58 NA InUTR Rattus norvegicus 81 AABR07013302.1 ENSRNOG00000055038 ENSRNOT00000041479 2 1 1 60 2 232373156 232373177 AGCAAGTTAAAGGCAAGATTCC 60 232373117 232373135 TGCTTGATGTGCTCAAACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Foxred2 ENSRNOG00000005749 ENSRNOT00000007598 1 1 1 80 7 119182800 119182818 TTTGTTCACATGCTGAGCC 59 119181888 119182756 ATTGTTGATGGCTCTGACG 58 NA Rattus norvegicus 81 Zfp189 ENSRNOG00000006972 ENSRNOT00000078502 1 1 2 80 5 64790195 64790595 CTGGACTCAAGGAGGAGTG 59 64790637 64790657 TTCCATAACTGTCCATCACGA 59 NA Rattus norvegicus 81 Fth1 ENSRNOG00000022619 ENSRNOT00000030919 2 1 1 81 1 226032377 226032396 GGGAACATGCTGAGAAACTG 59 226032436 226032706 CGGTCAGGTTTCTTTATATCCTG 59 NA Rattus norvegicus 81 Gng12 ENSRNOG00000050231 ENSRNOT00000075400 2 1 1 106 4 97758061 97759630 CTCCATCGAAAGAATAAAGGTCTC 59 97759695 97759713 TTTCTGAGGTCGGTATGCC 60 NA Rattus norvegicus 81 RGD1566053 ENSRNOG00000013378 ENSRNOT00000017909 1 1 1 80 4 65684588 65686906 ATATCTGCACTTCAAGTGCC 58 65684527 65684545 AGATGGTGTTGAAGTTCGC 59 NA Rattus norvegicus 81 Tcte1 ENSRNOG00000019961 ENSRNOT00000027031 2 1 1 80 9 17855637 17855657 CTCTTTCTCTTCACCTACCGA 59 17851207 17855598 CAGTCTGAAGATCTTGAGAGTG 58 NA Rattus norvegicus 81 Trim45 ENSRNOG00000015347 ENSRNOT00000043146 1 1 1 84 2 203304810 203304831 CCAAGGCTATGAAGTATATGGG 58 203304874 203306459 TCTATGGAGATCTTCTCCCTG 58 NA Rattus norvegicus 81 AABR07034532.1 ENSRNOG00000001713 ENSRNOT00000002330 1 1 1 60 11 74865427 74865447 CTTTGATGACAACGACCTGTG 60 74865387 74865407 CGGCTCCTTACCTATACTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tpd52l1 ENSRNOG00000021478 ENSRNOT00000078841,ENSRNOT00000030327 3 2 2 82 1 28544118 28551388 GAGTTAGTTCAGCTAGAAGAGG 58 28551428 28551449 TGTTTGATCTCAACCAGATGTC 59 NA Rattus norvegicus 81 Ovch2 ENSRNOG00000019794 ENSRNOT00000026807 1 1 1 80 1 172018902 172018921 TGTCACACTTGGATGTAGAG 57 172017994 172018860 AGAATTTCCCAACGAGTCTG 58 NA Rattus norvegicus 81 RGD1565498 ENSRNOG00000028782 ENSRNOT00000043581 1 1 1 81 7 63928431 63933670 AGCTCTAGATTTCACCACCC 59 63933714 63933732 TGAGGAGATGACTCAGCAC 59 NA Rattus norvegicus 81 RGD1565498 ENSRNOG00000028782 ENSRNOT00000043581 2 1 1 81 7 63928368 63928387 ACCCAGAAGTTCATCAACAC 58 63928430 63933669 GGTGGTGAAATCTAGAGCTG 58 NA Rattus norvegicus 81 Mcur1 ENSRNOG00000017988 ENSRNOT00000024206 1 1 1 80 17 24173778 24173796 GGTCAAGATTACGGAGACC 57 24173188 24173735 TGCTGAAGAGTGATTTCCTG 58 NA Rattus norvegicus 81 AABR07071393.1 ENSRNOG00000046440 ENSRNOT00000072842 1 1 1 60 8 113704440 113704458 AGAGATCTGGGAGCATCTG 58 113704398 113704417 GTCAACTTCAAAGCAGTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eef1b2 ENSRNOG00000024186 ENSRNOT00000034740 1 1 1 80 9 69955808 69955827 AGACATGACGAAACTTGAGG 58 69955868 69955985 ACTGGAACCAATTTAGAGGAG 57 NA Rattus norvegicus 81 Atp6ap1 ENSRNOG00000054352 ENSRNOT00000081914 3 1 1 80 X 156414532 156414553 CTTTCTACCTACTTAGACCCTG 57 156412470 156414492 CTCAATGCTTAGCTTGTCCT 58 NA Rattus norvegicus 81 Mbd6 ENSRNOG00000006209 ENSRNOT00000008854 3 1 1 88 7 70576051 70576281 ATTCTTCTCCTGGAGAGGGA 59 70575982 70576000 AGGAACTCGACAAGAAGGG 59 NA Rattus norvegicus 81 AABR07070599.1 ENSRNOG00000059112 ENSRNOT00000088413 2 1 1 60 8 76479838 76479859 GGGAAATAGCAGAATTTGTGG 58 76479798 76479818 TTCTTCACATCTTGCTGAAGC 59 NA DesignNoJunction Rattus norvegicus 81 Rps8 ENSRNOG00000054626 ENSRNOT00000081747 2 1 1 82 5 136022508 136023008 CCAACACTAAGATTGGCCC 59 136022444 136022462 ATCCAATCTCAGAGCACGA 59 NA Rattus norvegicus 81 Rreb1 ENSRNOG00000015701 ENSRNOT00000079298,ENSRNOT00000060218 2 2 2 81 17 27571521 27571542 AGGAGTTTGTTTGCAAGTATGG 60 27560364 27571481 ACACAGCAAATGTCACATCTC 59 NA Rattus norvegicus 81 Ssbp2 ENSRNOG00000016213 ENSRNOT00000021857 3 1 1 80 2 20681831 20686158 AGTCCAGCAGATTCAACCA 59 20686201 20686220 ATTAGGTCTGTTAGGCCCAG 59 NA Rattus norvegicus 81 Arl2bp ENSRNOG00000016991 ENSRNOT00000023455,ENSRNOT00000079523 1 2 2 80 19 10756663 10756684 AAGTACATTGAAGAGCAGTTGC 60 10756079 10756622 TTTATGGTGCTGCAGTGTG 59 NA Rattus norvegicus 81 Fam171a2 ENSRNOG00000021041 ENSRNOT00000028563 1 1 1 86 10 90385255 90385788 ATCTACTACTGCCGACGAC 59 90385187 90385205 ATCTCGTTTGTTGTCCGAG 58 NA Rattus norvegicus 81 Mbd3l2 ENSRNOG00000026629 ENSRNOT00000029911 3 1 1 89 8 17928394 17929082 CCTTTGCTAGGAAGACTCAC 58 17929134 17929152 GGTCTTTGTCTTGCTCTGG 59 NA Rattus norvegicus 81 Oas1a ENSRNOG00000001369 ENSRNOT00000038426,ENSRNOT00000048450,ENSRNOT00000067176 1 3 3 81 12 41205373 41205391 GAGGAACTTCCTGAAGCAG 58 41205435 41208790 CTCCTTACACAGTTGGTACC 58 NA Rattus norvegicus 81 Vom2r1 ENSRNOG00000048575 ENSRNOT00000075323 3 1 1 80 10 111552461 111561235 GGAGAAACATTGGTTCCCTC 59 111552400 111552419 GGCTGTTTGTTTCTGATGAC 58 NA Rattus norvegicus 81 Zfp14 ENSRNOG00000047379 ENSRNOT00000075435 2 1 1 83 19 14490115 14493854 ATCTCACTGGATCTGGAGTC 58 14493896 14493918 CCACTGTACCGAATATACTTCAC 59 NA Rattus norvegicus 81 Tspan1 ENSRNOG00000023320 ENSRNOT00000078736,ENSRNOT00000018766 3 2 2 80 5 135021957 135024399 ATCTACTCATCTTTCTCTGTGG 57 135021898 135021916 CCTTCAGGAAAGATGTCCC 58 NA Rattus norvegicus 81 Bcl7c ENSRNOG00000018916 ENSRNOT00000025618 1 1 1 121 1 199157654 199157770 GGATCTCAATGATGAGAACAGC 59 199157554 199157572 GAGGTCCAGTTGGTGATCC 60 NA Rattus norvegicus 81 Aldoart2 ENSRNOG00000030869 ENSRNOT00000043224 3 1 1 60 6 76350224 76350242 GTCACTTTCCTGTCTGGAG 58 76350264 76350284 TGATAGCATTGAGGTTGATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc41 ENSRNOG00000013642 ENSRNOT00000018506 1 1 1 80 5 134946732 134947285 CCTTCAAGAGATTACCTTCTCC 58 134947326 134947344 ATAGCAGCAACCATCTCAG 57 NA Rattus norvegicus 81 Clec14a ENSRNOG00000022697 ENSRNOT00000030706 2 1 1 60 6 79305256 79305274 CAGGAAGTATGATGCCCAC 58 79305214 79305234 TCGAAAGTCAGAGAAACAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abcb8 ENSRNOG00000008557 ENSRNOT00000089817,ENSRNOT00000012222 1 2 2 80 4 7300754 7300773 CAAGAACTTCACCCTGAAGC 59 7300509 7300711 GCAACTGTGGTCTTTCCTC 59 NA Rattus norvegicus 81 Glipr1 ENSRNOG00000026644 ENSRNOT00000005399 3 1 1 80 7 54769070 54769088 GCCCAAAGGATGACAAGTG 59 54768026 54768141 GATAATCAGCAGAGTGACGTG 59 NA Rattus norvegicus 81 Olr959 ENSRNOG00000059839 ENSRNOT00000050153 2 1 1 60 7 6970725 6970746 GTGTAGCTGTTCTCAATACCTC 59 6970686 6970707 CTTAGGGTGTAAATGAAAGGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr959 ENSRNOG00000059839 ENSRNOT00000050153 3 1 1 60 7 6971412 6971433 TAATTATCTTCCTCACCCTGCT 59 6971373 6971393 CGGAGAAAGAAGTACATTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Psmg4 ENSRNOG00000039265 ENSRNOT00000060132 1 1 1 110 17 31411728 31411746 CCACTTTCATGTCATGCGG 60 31408981 31411654 ACAGGGATGGAATCGAAGC 60 NA Rattus norvegicus 81 Cpa6 ENSRNOG00000005655 ENSRNOT00000007491 3 1 1 80 5 8467514 8469679 CTTGATTATACAGCTGGGCA 58 8469721 8469740 CATTCTCTTGCATGAATGCC 58 NA Rattus norvegicus 81 Dennd2a ENSRNOG00000026748 ENSRNOT00000034549 3 1 1 80 4 67245780 67248254 TCGATTCCTCAGACAGATGG 59 67245719 67245737 TGCTCCAGAATGTGTTCCA 59 NA Rattus norvegicus 81 Agfg1 ENSRNOG00000015619 ENSRNOT00000021309 2 1 1 80 9 88641537 88641555 CCCTGAAATCTCTGTTGGG 58 88641599 88642232 GACCTACAACTGGTGACTG 58 NA Rattus norvegicus 81 Lyc2 ENSRNOG00000034139 ENSRNOT00000064594 3 1 2 102 7 60320803 60320821 AGAGACATTCTCAGCCTGG 59 60320887 60322020 GCAGCAGAGATGTATGGAC 58 NA Rattus norvegicus 81 Mroh6 ENSRNOG00000032231 ENSRNOT00000048363 1 1 1 80 7 116916754 116916772 AGGAGATGGTTACTGTGGC 59 116916499 116916711 TTGGATATCGGTGAACCAGG 60 NA Rattus norvegicus 81 Krtap3-1 ENSRNOG00000012544 ENSRNOT00000016752 1 1 1 60 10 87484811 87484829 TTCCTCTGACAAGTCCTGC 59 87484769 87484787 GATCTCATGTGGGCAAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptger3 ENSRNOG00000010325 ENSRNOT00000014126,ENSRNOT00000014034 2 2 2 80 2 263896109 263940271 CCGCTATTGATAATGATGCTG 57 263940313 263940331 CTTCTCCTTTCCCATCTGC 58 NA Rattus norvegicus 81 LOC100911617 ENSRNOG00000048996 ENSRNOT00000075181 3 1 1 60 2 213421038 213421056 GATTAGCGACCAGATGCTG 59 213420996 213421014 ATAGTGCTGCTTCACTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc26 ENSRNOG00000027617 ENSRNOT00000031193,ENSRNOT00000078066 1 2 2 80 4 66107583 66107603 CAATCCACTACATGCGATCTC 59 66107643 66110847 CCAGGTATTCCCTGTTATCCA 59 NA Rattus norvegicus 81 Rn60_1_1373.2 ENSRNOG00000051334 ENSRNOT00000076469 2 1 1 60 1 136285227 136285249 CCCTACAGTTAGATACTACACCA 59 136285269 136285287 GAGTTCTTTCAGGCTGACG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC679247 ENSRNOG00000047631 ENSRNOT00000074645 2 1 1 83 7 70327779 70327797 AGAAGGTGATCGAACTGGG 59 70321458 70321478 AATCAGTGATGGTAACATCCC 58 NA DesignNoJunction Rattus norvegicus 81 Dennd2c ENSRNOG00000018716 ENSRNOT00000081050,ENSRNOT00000025365 2 2 2 80 2 205648807 205652619 TCCCATTGAAGAGGTGCTG 60 205653518 205653536 GGCATGATCTCATCCTCGT 59 NA Rattus norvegicus 81 RT1-DOb ENSRNOG00000000454 ENSRNOT00000085724 2 1 2 81 20 4024440 4024458 TGGAGACGTCTACAGTTGC 60 4024502 4025448 ATATTCAGACTGAGCCACCC 59 NA Rattus norvegicus 81 Trib2 ENSRNOG00000004110 ENSRNOT00000005774 1 1 1 182 6 41034347 41039404 GGTGTGCAAGGTGTTTGAG 60 41034183 41034201 CTCAGCTTCTTGCAAGTGC 60 NA InUTR Rattus norvegicus 81 Tor1aip2 ENSRNOG00000024849 ENSRNOT00000050734 3 1 1 80 13 73730459 73731453 CTCTGGACCTATGGTTCCA 58 73731495 73731515 GGAGGAATAGTAGCTGTTGAC 58 NA Rattus norvegicus 81 AABR07007544.1 ENSRNOG00000048330 ENSRNOT00000073727 1 1 1 82 2 17939769 17939792 CCTTCAAGAATTACAGGAGAACAC 60 17939686 17939705 CCTTTACTGGCATGCTTGTC 60 NA DesignNoJunction Rattus norvegicus 81 St18 ENSRNOG00000006200 ENSRNOT00000091649,ENSRNOT00000059625,ENSRNOT00000092104 3 3 3 80 5 12467697 12473131 GAGGAGAAAGAGAAAGACCCT 59 12467637 12467656 ACTTGGAATAGAGGCCTCTC 59 NA Rattus norvegicus 81 Uqcrfs1 ENSRNOG00000018281 ENSRNOT00000024609 2 1 1 89 17 35678245 35681455 CCTGAATGTTCCTGCTTCTG 59 35681505 35681525 CTATCTAGAACTTCAGCACGG 58 NA Rattus norvegicus 81 Uqcrfs1 ENSRNOG00000018281 ENSRNOT00000024609 3 1 1 90 17 35678245 35681455 CCTGAATGTTCCTGCTTCTG 59 35681506 35681526 GCTATCTAGAACTTCAGCACG 59 NA Rattus norvegicus 81 Jam2 ENSRNOG00000042848 ENSRNOT00000046973 3 1 1 80 11 24266396 24266414 TCCTCCAGACTAGAGTGGA 58 24266457 24268549 TTTAAAGTCGCCTTGGAGAG 58 NA Rattus norvegicus 81 RGD1566264 ENSRNOG00000036836 ENSRNOT00000051929 1 1 1 80 7 144886737 144886866 ATCAAGAAACTCGGGTCAC 58 144886675 144886696 CTTGACAAAGTACATGTTCCTC 57 NA Rattus norvegicus 81 AABR07026893.1 ENSRNOG00000050796 ENSRNOT00000072930 1 1 1 80 17 3729725 3729743 ATCCCTTCCAGAAGAAGCT 58 3729468 3729684 CTTCCCAATTAAAGCCTATAGC 57 NA Rattus norvegicus 81 Sept2 ENSRNOG00000017952 ENSRNOT00000024261 1 1 1 80 9 100651284 100651303 TACAGGAAGTGACCCAAGAC 59 100651345 100653485 CATTCTCTACTTTCCTGCCG 59 NA Rattus norvegicus 81 Lppr3 ENSRNOG00000027940 ENSRNOT00000031315 3 1 1 91 7 12661716 12661735 TACTCATGCCATCCTGTCAG 59 12661920 12662023 TGAAGTACATCGAAACGTAGAC 58 NA Rattus norvegicus 81 Nup153 ENSRNOG00000001456 ENSRNOT00000001979 1 1 1 80 17 18375720 18375738 CATACTGCCATCAGCTCCA 60 18375780 18375882 TGAAGAATTCCCAAGTGAGGT 59 NA Rattus norvegicus 81 Pycard ENSRNOG00000019675 ENSRNOT00000026699 1 1 1 81 1 199438838 199438859 CACAATGACTGTGCTTAGAGAC 59 199438548 199438796 CACAGCTCCAGACTCTTCC 60 NA Rattus norvegicus 81 LOC100911625 ENSRNOG00000048365 ENSRNOT00000005535 1 1 1 80 9 20257118 20257619 CGGAACTATCCTGTGGTCTC 60 20257661 20257680 GACATTGGCTGTGAACTTGG 60 NA Rattus norvegicus 81 LOC100911426 ENSRNOG00000032062 ENSRNOT00000043603 1 1 1 67 1 66963283 66963303 GCCTATTAAGAGATGCAAGCC 59 66963328 66963782 ACCTTAGAACTGGATCCTTTCTC 60 NA DesignNoJunction Rattus norvegicus 81 Cggbp1 ENSRNOG00000000718 ENSRNOT00000000909 1 1 1 80 11 1909367 1911669 GAAATTAAGCCGAAGAGCCT 58 1911710 1911730 TTAGAACGATTTCTAGCAGGC 58 NA InUTR Rattus norvegicus 81 Defb49 ENSRNOG00000039651 ENSRNOT00000060805 3 1 1 67 9 24451381 24451399 CTCGACCTGTTGAAGACAG 58 24446415 24446434 TTGCCTTTCTTGAGAAAGCA 58 NA DesignNoJunction Rattus norvegicus 81 Ly49i4 ENSRNOG00000051600 ENSRNOT00000091932,ENSRNOT00000078219,ENSRNOT00000087796 2 3 5 80 4 164530394 164530413 GGCATGAATGTAAACAGACC 57 164520729 164530353 GAAGGAACTTCAGTTCATCCT 58 NA Rattus norvegicus 81 Cytl1 ENSRNOG00000028108 ENSRNOT00000035427 3 1 1 84 14 77808340 77809994 GAGCCTGAGGACTCATGTG 60 77808068 77808086 AGTCTCGAAGCTTGGTCAG 59 NA Rattus norvegicus 81 Sost ENSRNOG00000020805 ENSRNOT00000028238 1 1 1 80 10 89899933 89899952 GAACAACCAGACCATGAACC 59 89897496 89899890 TACTCGGACACGTCTTTGG 60 NA Rattus norvegicus 81 Heatr5b ENSRNOG00000025926 ENSRNOT00000035905 2 1 1 80 6 1352515 1352535 CTCCTAGTCAACTGTACCGAG 59 1345860 1352473 CCACATATACCTCTGCCCA 59 NA Rattus norvegicus 81 RGD1563405 ENSRNOG00000009002 ENSRNOT00000011900 2 1 1 60 5 17399642 17399662 ACGCCACATATGATAAGACTC 58 17399602 17399620 TAGGGCAGGTCTAGAACAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdkn2aip ENSRNOG00000022736 ENSRNOT00000030519 3 1 1 90 16 47666981 47667568 GGATATCGAGTAGCAATGAAGG 59 47667619 47667637 CCATGATCTCGCTCAACTG 58 NA Rattus norvegicus 81 Zfp951 ENSRNOG00000043048 ENSRNOT00000044065 1 1 1 80 14 6284039 6284057 TGGATCCTTCCCAGAAGAG 58 6283780 6283996 CCCAGTAAGAGCCTATAGCA 58 NA Rattus norvegicus 81 Adgrl2 ENSRNOG00000032660 ENSRNOT00000042256,ENSRNOT00000045905,ENSRNOT00000081945,ENSRNOT00000040566,ENSRNOT00000045020 1 5 5 80 2 258825657 258828090 TACCTTAAGGCCATTGTGGA 59 258825596 258825617 TGAGGAATTCATGTGTTTCCAG 59 NA Rattus norvegicus 81 Sqle ENSRNOG00000009550 ENSRNOT00000012883 3 1 1 80 7 99617248 99617347 TCATTATGAAGGATGCACCA 57 99617389 99617408 GGTAGATGAGAACTGGACTG 57 NA Rattus norvegicus 81 Colca2 ENSRNOG00000042165 ENSRNOT00000065744 3 1 1 82 8 55675209 55676655 ATAACCTGCATCTGATGCCA 60 55675146 55675164 CTGAGCTGGTGAGTAGCTG 60 NA Rattus norvegicus 81 Asb7 ENSRNOG00000013795 ENSRNOT00000084082,ENSRNOT00000018436 1 2 2 80 1 127589305 127589324 CTTGCTCCATTTCTCTGCAG 59 127570179 127589262 TTAACCGTGGGATCAGCTC 60 NA Rattus norvegicus 81 Ngf ENSRNOG00000016571 ENSRNOT00000022200,ENSRNOT00000078376 2 2 2 88 2 204932429 204932447 AAGCTCACCTCAGTGTCTG 59 204932498 204938635 GACATTACGCTATGCACCTC 59 NA InUTR Rattus norvegicus 81 Bpgm ENSRNOG00000010133 ENSRNOT00000090717 1 1 2 80 4 61936936 61939862 GAAGAGCAGTATCTCAGACGA 59 61939904 61939922 TTCTCATCCAACTCCAGCA 59 NA Rattus norvegicus 81 Phf12 ENSRNOG00000009566 ENSRNOT00000056234 1 1 1 80 10 64820768 64821850 CATCATCAGATGGCAAGGTC 59 64820707 64820726 TAGAGTTGGCTGGGAAAGAG 59 NA Rattus norvegicus 81 Crls1 ENSRNOG00000021273 ENSRNOT00000028900 1 1 1 80 3 125517883 125517907 GAACACTAGCTAAGTACTTCAATCC 59 125517944 125519686 CTGCTGTATTGACCTTGCTG 59 NA Rattus norvegicus 81 AABR07051626.1 ENSRNOG00000029562 ENSRNOT00000040689 3 1 1 81 3 18244370 18244411 AACCAGGACAATGCATCCA 60 18244307 18244326 TCAATGGTGAAGTCTGTCCC 60 NA Rattus norvegicus 81 Msantd3 ENSRNOG00000008159 ENSRNOT00000011273,ENSRNOT00000083796 1 2 2 80 5 64294799 64294818 CAGCTCTACTTCCTTCAGAG 57 64294861 64303955 AACAGCAAAGGACTCTTGG 58 NA Rattus norvegicus 81 LOC100363935 ENSRNOG00000046936 ENSRNOT00000074272 1 1 1 91 3 19128439 19128631 AGTATCACAGTCTTAGTGTCCAG 59 19128682 19128700 GTGATGGTGACCTTCTCCC 60 NA Rattus norvegicus 81 Rgsl2h ENSRNOG00000026940 ENSRNOT00000025544 2 1 1 91 13 71282575 71282593 GAAGACCAGAACGGAAACC 59 71282296 71282520 GTTGCATATCAGAGCCCTG 58 NA Rattus norvegicus 81 Ncaph2 ENSRNOG00000009598 ENSRNOT00000084776,ENSRNOT00000055808 2 2 2 80 7 130334185 130334203 TAGTGCAGGAAGATGGGAG 59 130334247 130334344 CATCCAGTGACAGGAACTC 58 NA Rattus norvegicus 81 LOC497940 ENSRNOG00000015975 ENSRNOT00000021402 2 1 1 80 10 56508619 56509660 GACACCAATGATTCTGCTACC 59 56508559 56508578 TTGTAAAGTAGCCAGCTCCC 60 NA Rattus norvegicus 81 Mroh9 ENSRNOG00000003698 ENSRNOT00000004931 1 1 1 80 13 80961738 80968716 GAGAGTCAAGAAATACCCGAG 58 80961678 80961696 TCATGGGAACAGAAGAGGG 59 NA Rattus norvegicus 81 AABR07065811.1 ENSRNOG00000042569 ENSRNOT00000064717 2 1 1 60 6 142059844 142059862 TTATGCAACCGAGTATGCG 58 142059802 142059823 GGAATCATCTCTTGAGATGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r53 ENSRNOG00000007730 ENSRNOT00000010203 1 1 1 80 7 13177248 13183153 TTTCCAACGAGACAGATGTG 58 13183196 13183214 TCAGGCAGTGACTCTTCTC 59 NA Rattus norvegicus 81 Angptl1 ENSRNOG00000004712 ENSRNOT00000065801 2 1 2 80 13 74456764 74462021 TTCAACACCAAAGACGCTG 59 74462061 74462083 GTAGGAAGAGTACCACACTTAGG 60 NA InUTR Rattus norvegicus 81 Zfp385a ENSRNOG00000036833 ENSRNOT00000083935,ENSRNOT00000086554,ENSRNOT00000064261 3 3 3 83 7 144943934 144943952 GAATCAGGAGATCCGGCTC 60 144942058 144943888 GCCATTCTCCATGGAAACTG 59 NA Rattus norvegicus 81 Sarm1 ENSRNOG00000010244 ENSRNOT00000013639 3 1 1 80 10 65757377 65757396 TTTGCTTCTACGACTCACAG 58 65757207 65757334 CTAAAGAACCTCTTGCGGG 58 NA Rattus norvegicus 81 Rapgef5 ENSRNOG00000005271 ENSRNOT00000007112 1 1 1 80 6 145578453 145578474 ATATCCGATCCTTGAGAAAGAG 57 145578514 145581512 GAGTATAGGGCAAGAGTGTG 58 NA Rattus norvegicus 81 Wdr45 ENSRNOG00000009749 ENSRNOT00000013369 1 1 1 80 X 15623454 15623472 CTCCAAGGACAAACTGGTG 58 15623245 15623411 ATCACAATCTTGTCATGGCG 59 NA Rattus norvegicus 81 Smg7 ENSRNOG00000027962 ENSRNOT00000044235 2 1 1 80 13 70282758 70282778 GATACAGAAACCAGACTAGCC 58 70281675 70282716 TGTAAGGCTGACCATTGGA 59 NA Rattus norvegicus 81 Atp6v0a2 ENSRNOG00000052704 ENSRNOT00000087698,ENSRNOT00000083401 2 2 3 80 12 37377764 37377782 TGTCATGTTCCTGTTTGCC 59 37377340 37377722 ATCCTAAGGATCTCCTGTGAC 59 NA Rattus norvegicus 81 Lss ENSRNOG00000054549 ENSRNOT00000085270,ENSRNOT00000078412 1 2 4 114 20 12858049 12858067 TTCATTTGCTGTCCAAGCC 59 12856519 12857385 ATTGTTGTCTGGGACCTGG 60 NA Rattus norvegicus 81 Ces5a ENSRNOG00000025710 ENSRNOT00000049452 3 1 1 80 19 12136125 12136148 CTACGATCAAACTGTACTGAAGC 60 12136190 12136209 TCTGTCCAATTCCACTCTCG 60 NA Rattus norvegicus 81 Nostrin ENSRNOG00000006611 ENSRNOT00000067161 2 1 1 80 3 55423062 55424387 CAAGAGACAAAGAAGGCCTG 59 55424428 55424448 CTTTCTGGCTCTTAGCATCAG 59 NA Rattus norvegicus 81 Ppm1j ENSRNOG00000012481 ENSRNOT00000016833 2 1 1 80 2 207267829 207267848 GACCACAACCTTAAGGTCTG 58 207267888 207268021 ATCATACACTCGTACTTCAGGA 59 NA Rattus norvegicus 81 RragB ENSRNOG00000050535 ENSRNOT00000075249 2 1 1 80 X 19339715 19339734 ACTTTGCTGCTTTCATTGAC 58 19338727 19339672 CTGCAGAAGGAATGGATGG 58 NA Rattus norvegicus 81 Rp1 ENSRNOG00000008807 ENSRNOT00000047093 1 1 1 81 5 15044131 15051301 AAGGTTCAAGTTCTGGTCTC 58 15051344 15051363 CTTCAGAAGAAGTCAGACGA 57 NA InUTR Rattus norvegicus 81 Pgrmc2 ENSRNOG00000014051 ENSRNOT00000018796 3 1 1 64 2 127988904 127988922 TTCGAGAGTGGGAAATGCA 59 127987335 127987353 CCCTGGCTTTAGGAGTCTG 60 NA DesignNoJunction Rattus norvegicus 81 Zfp110 ENSRNOG00000031328 ENSRNOT00000026298 2 1 1 81 1 65754795 65754817 CTCAGTTAGAAGAAGCAGAAGAC 59 65747377 65754754 GAAGGCCCAGAACATTCTG 59 NA Rattus norvegicus 81 Oaf ENSRNOG00000009243 ENSRNOT00000012826 2 1 1 126 8 47513965 47513984 TTAACTTCAGTCAGGGAGGC 60 47512649 47513876 ACAGAACTGTCCACACCTC 59 NA Rattus norvegicus 81 Opn4 ENSRNOG00000053893 ENSRNOT00000091315 3 1 2 80 16 10945655 10945674 GTCATGACCTGGAAGATGGA 59 10944041 10945613 GTCTCTTGGTCTTGGGAGTC 60 NA Rattus norvegicus 81 rno-mir-3543-1 ENSRNOG00000050253 ENSRNOT00000062188 2 1 1 60 6 133716290 133716308 TGATGGTTCAAACCACGAG 58 133716248 133716266 GTTTGAACCACAGCTCGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir487b ENSRNOG00000036489 ENSRNOT00000054597 3 1 1 60 6 133877135 133877154 GAGTGGTTATCCCTGTCCTC 59 133877176 133877195 AAAGTGGATGACCCTGTACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aqp7 ENSRNOG00000009686 ENSRNOT00000012975 3 1 1 80 5 57360781 57369164 TCTTGATGGTGTTTGGCCT 60 57360719 57360739 CCAAGTTGACACCAAGATAGC 59 NA Rattus norvegicus 81 Sos2 ENSRNOG00000004826 ENSRNOT00000089891,ENSRNOT00000006425 2 2 2 80 6 91891993 91892013 AGATGTGGACCTCAATAGCTC 59 91888218 91890318 CTGAAGAAAGACTTTGAGTGTGG 60 NA Rattus norvegicus 81 Clrn2 ENSRNOG00000027195 ENSRNOT00000022589 1 1 1 80 14 70154304 70160387 CAGTCCCAGTTTACAATCTTCC 59 70154245 70154266 GAAGAGGAGCAAGAGAATAGTG 58 NA Rattus norvegicus 81 Enpp4 ENSRNOG00000010174 ENSRNOT00000045937,ENSRNOT00000065048 3 2 2 84 9 19452868 19454541 TTAGGTGACCATGGCTATGAC 60 19454587 19454605 TGTAGCCTTTCCTGAAGGC 60 NA DesignNoJunction Rattus norvegicus 81 Grhl3 ENSRNOG00000029427 ENSRNOT00000065247 1 1 1 80 5 153908888 153910567 CAAGGAAAGAAGTACTACCACAG 59 153908830 153908849 AAATTTCATGAGGTGCGTGG 60 NA Rattus norvegicus 81 Olr1366 ENSRNOG00000039761 ENSRNOT00000060991 1 1 1 80 10 12467936 12467955 CCATGTACTTCTTCCTCAGC 58 12467604 12467893 GGGATGATGTTGTCTTGGG 58 NA Rattus norvegicus 81 rno-mir-6319-1 ENSRNOG00000059465 ENSRNOT00000086907 1 1 1 60 17 34746557 34746577 AATACTCAGCAGTGTTAGAGG 57 34746599 34746617 TCATTCCTCTCGGCATCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfsf13b ENSRNOG00000014464 ENSRNOT00000067511 3 1 2 123 16 85305322 85305427 GAGTCAAACTCCCAACACC 58 85299027 85299045 ACTGGAGTAGCTGAGAGGT 59 NA Rattus norvegicus 81 Fars2 ENSRNOG00000016135 ENSRNOT00000021660,ENSRNOT00000080031 3 2 2 80 17 29210882 29311107 CAGCTTGTCAATTCAGCTGG 60 29210821 29210839 GAGGACCATAGCCAGTCTC 59 NA Rattus norvegicus 81 Olr1060 ENSRNOG00000031181 ENSRNOT00000051063 1 1 1 60 7 9173872 9173892 TGGGTAATTGGGTTCTTAGTC 57 9173832 9173851 AGAAATCCAGTTTGAGTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cog6 ENSRNOG00000013660 ENSRNOT00000018385 3 1 1 80 2 142220741 142220759 GCTCTTACAAGAGGAGGGC 60 142220604 142220697 GTCTCCCACATACCTCAGC 60 NA Rattus norvegicus 81 Il17rc ENSRNOG00000027376 ENSRNOT00000037788 3 1 1 81 4 145433142 145433163 TTGGCTTCTTACTATACTGGGA 59 145433204 145433424 ATGTTCTGAGGTCCAGTCAG 59 NA Rattus norvegicus 81 Gas6 ENSRNOG00000018233 ENSRNOT00000024677 3 1 2 118 16 81231349 81233292 AGATATCAAGAGTGCATGAGG 57 81226495 81226513 GTGCCCTTCTTATCACAGG 58 NA Rattus norvegicus 81 LOC100912604 ENSRNOG00000046379 ENSRNOT00000071712 1 1 1 80 3 14589844 14590602 GATCGATGAGGATGTCATTGAG 59 14590643 14590661 AGAGTCAGCTTTGAGCTGG 60 NA Rattus norvegicus 81 Hrsp12 ENSRNOG00000005437 ENSRNOT00000007430 2 1 1 80 7 73259411 73260202 CTGTGACTTCACTAATGTGGTG 59 73259352 73259373 TTGTAGATCTCATTGACAGTGC 59 NA Rattus norvegicus 81 Paqr8 ENSRNOG00000012830 ENSRNOT00000029696 2 1 1 135 9 27047649 27049825 TCTACAAAGGTTGTCCTACTG 57 27049922 27049940 TTCTTCCAGAATCTTGGGC 57 NA InUTR Rattus norvegicus 81 Fam81a ENSRNOG00000057501 ENSRNOT00000088628,ENSRNOT00000090747 2 2 2 80 8 76545393 76560133 ATATTGAGGTTCTCCAGGAGC 59 76545333 76545353 TCTCCAGTGTCTTTAAGGCAG 60 NA Rattus norvegicus 81 Capza2 ENSRNOG00000056207 ENSRNOT00000090451 3 1 1 80 4 44955359 44955380 TGGAGAACTTCAGTAGAAACTG 58 44955421 44956170 TTTGCCATACACAGTGCAG 59 NA Rattus norvegicus 81 Eif3k ENSRNOG00000020495 ENSRNOT00000087522,ENSRNOT00000067802 2 2 2 101 1 87928653 87929974 AGACCTGACTGACAACCAG 59 87928570 87928588 TTAATGCTCTCCTCCTGGC 59 NA Rattus norvegicus 81 LOC684238 ENSRNOG00000021704 ENSRNOT00000071201 1 1 1 80 5 58760837 58760856 TTGAGGAGAACAAATGGAGG 58 58760899 58761259 GTACATCTGCTGTAACGGG 58 NA Rattus norvegicus 81 Zfp280b ENSRNOG00000028441 ENSRNOT00000081733 3 1 1 60 20 13570429 13570447 TCGAGTCTAGCAAGTCCAG 59 13570387 13570408 TAAGCAACAGAGTCAAACTTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atf7ip2 ENSRNOG00000025522 ENSRNOT00000039429 2 1 1 82 10 5511861 5511879 TGGAGATCCTGAACCAGTC 58 5508323 5511818 CTTCTGATTATGGCCATTTGGA 59 NA Rattus norvegicus 81 Pkdrej ENSRNOG00000029591 ENSRNOT00000041057 1 1 1 60 7 126699423 126699441 CAGATGTGGTTGGGTTCAG 59 126699381 126699400 GCAATCTCTATGGCGTTACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gabpa ENSRNOG00000053205 ENSRNOT00000086946 3 1 1 80 11 24316552 24316571 GGCAGCTAAAGTTCAAAGGT 59 24316612 24316904 TGACCATTGTTTCCTGTTCTG 59 NA Rattus norvegicus 81 Lsm14a ENSRNOG00000021133 ENSRNOT00000078585 2 1 1 83 1 90231375 90231393 GACCTCACTGTTTGTGAGC 59 90227595 90231330 TGACGAACCTAGTGAAGACTG 60 NA Rattus norvegicus 81 Lgals2 ENSRNOG00000008539 ENSRNOT00000011750 1 1 1 80 7 120071722 120072611 TGATGTTAACAGCTTCACCA 58 120071661 120071679 GATTCATTGAAGCGAGGGT 58 NA Rattus norvegicus 81 LOC302157 ENSRNOG00000047443 ENSRNOT00000075166 2 1 1 60 2 153140728 153140747 GTCCATTCTCAAGCTCACTG 59 153140687 153140705 TCCCTATGACCATATGCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plxna4a ENSRNOG00000013072 ENSRNOT00000017536 2 1 1 80 4 59473483 59476631 ATATAAGACCCTGGTCCTGAG 58 59473423 59473442 TCACAGTTGAGGATCTTCAC 57 NA Rattus norvegicus 81 Thbs4 ENSRNOG00000012471 ENSRNOT00000083531,ENSRNOT00000065224 2 2 2 80 2 22348104 22349767 GGAAGATAGCAACAATGATGGA 59 22348045 22348065 ACATCAATGCGATCAATGACC 60 NA Rattus norvegicus 81 Arglu1 ENSRNOG00000024142 ENSRNOT00000057347 1 1 2 134 16 86607389 86607407 GACAGAGACAAGCTGAGCT 59 86609771 86624235 GTTCTTCAGCCAGTTTGGC 60 NA Rattus norvegicus 81 Cyp2b2 ENSRNOG00000020775 ENSRNOT00000028196,ENSRNOT00000047540 1 2 2 80 1 83113465 83114891 CATGTCACAGAGAAAGTCCA 58 83114933 83114952 TTTGGTACGATCATCAAGGG 58 NA Rattus norvegicus 81 Olr885-ps ENSRNOG00000028911 ENSRNOT00000051296 2 1 1 60 7 16010529 16010547 ATTCTACTGGGACTGACGG 59 16010487 16010510 GAAACAGAAAGGTGAAGATCAGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl7 ENSRNOG00000006992 ENSRNOT00000009431 2 1 1 80 5 2634676 2635025 CAGAATCCGAGGTATCAATGGA 60 2635066 2635084 CCATTGAAGATCTGCCGGA 60 NA Rattus norvegicus 81 Btg3 ENSRNOG00000001555 ENSRNOT00000002121 2 1 1 80 11 16878158 16878179 GCAAGGAAGTAGAAGTGAAACC 60 16874290 16878123 GTGGGAATATCAGTTCTGAAATCTG 60 NA Rattus norvegicus 81 Cit ENSRNOG00000001143 ENSRNOT00000086716,ENSRNOT00000041281,ENSRNOT00000057036 1 3 3 80 12 46412220 46413499 AGAATGCAGTAGCTTAAAGCG 59 46412160 46412179 AGAAGCTGAAGAGCTTTGTC 58 NA Rattus norvegicus 81 Mbl1 ENSRNOG00000011706 ENSRNOT00000015723 2 1 1 80 16 18740562 18741420 AGCTAACCAACAAGTTGCA 58 18741464 18741482 GCATCCTTTCATGGTTGGT 58 NA Rattus norvegicus 81 Jag1 ENSRNOG00000007443 ENSRNOT00000010638 1 1 1 80 3 130082636 130082844 TGATGTCTCCAGGTCTCAC 58 130082574 130082595 ACTCAGCAGAAACATTCTTCAG 59 NA Rattus norvegicus 81 Irx5 ENSRNOG00000011180 ENSRNOT00000089975,ENSRNOT00000015272 3 2 2 102 19 16419471 16419491 AGGAGGAGAACATTGATCTGG 59 16419555 16419724 TTCTGCTCTGTTCCTCCTG 59 NA Rattus norvegicus 81 Ccdc36 ENSRNOG00000048919 ENSRNOT00000071189 2 1 1 80 8 117185268 117185287 GAGGCAGTGAAAGACAAAGG 59 117184417 117185227 AAATTCTGCTTGTCTAGCTGC 59 NA Rattus norvegicus 81 Grk4 ENSRNOG00000011847 ENSRNOT00000015894 1 1 1 80 14 81273483 81273502 AGTGAAGACTGAAACTGAGG 57 81270725 81273442 TCCTTGGTAAGTAACATGCTG 58 NA Rattus norvegicus 81 Tcta ENSRNOG00000048237 ENSRNOT00000075241 1 1 1 91 8 117081807 117081825 AGTGACCGGGTTGTATCAC 59 117080359 117081425 CTGCCATTTCCCATGAAGG 59 NA Rattus norvegicus 81 Mir30d ENSRNOG00000035611 ENSRNOT00000053734 2 1 1 60 7 109286522 109286541 TCTGTGTCTGTAAACATCCC 57 109286481 109286499 ATCTGACTGAAAGCTTGGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam195b ENSRNOG00000036691 ENSRNOT00000054960 2 1 1 81 10 109721258 109721956 TCATTTATGAAGCCTGGCAG 58 109721196 109721214 TATTCCTCCACTAGGCACC 58 NA Rattus norvegicus 81 Rbms1 ENSRNOG00000008482 ENSRNOT00000011682,ENSRNOT00000087439 2 2 2 80 3 46894990 46895010 TAAGACGAACCTCTACATCCG 59 46847418 46894949 TTCCCGTATGGTTGACAGAG 60 NA Rattus norvegicus 81 Rnf111 ENSRNOG00000060750 ENSRNOT00000084313,ENSRNOT00000082709 2 2 2 80 8 76870386 76874413 CTTCCCTTAATGGTCCCTG 57 76870324 76870342 TCTGAATGATGTTCCGTCC 57 NA Rattus norvegicus 81 Slc7a2 ENSRNOG00000011016 ENSRNOT00000014809,ENSRNOT00000015127 3 2 2 80 16 54478258 54479137 CTGTCATATGTCATAGGTACGTC 58 54478200 54478221 GCCAATCTGTTTGTTAAGAAGC 59 NA Rattus norvegicus 81 Phtf1 ENSRNOG00000019785 ENSRNOT00000026863 2 1 1 80 2 206469337 206472100 CTGTACCTCATGCAAGTTACAG 59 206472140 206472159 CAATGGTCCAAGCACTTCAC 60 NA Rattus norvegicus 81 Fam50a ENSRNOG00000058439 ENSRNOT00000086921 2 1 1 80 X 156397357 156397375 GGAGGAAGAAGAGGAGGGA 60 156395560 156397314 GTGGTGATCTCTTCCCTCTC 59 NA Rattus norvegicus 81 Cyp4f39 ENSRNOG00000029478 ENSRNOT00000007548 2 1 1 80 7 14512829 14513401 ACTCTAAGGTATACAATCCCTACC 59 14513440 14513458 CTGAGAAAGGCACAAAGGC 60 NA Rattus norvegicus 81 Rps10 ENSRNOG00000052141 ENSRNOT00000043250 3 1 1 60 6 75430095 75430115 GACAGAGACACCTACAGAAGG 60 75430137 75430155 CAGCCTCAGCTTTCTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nras ENSRNOG00000023079 ENSRNOT00000039572 3 1 1 80 2 205555369 205558604 ATTAACCTCTACAGGGAGCA 58 205558647 205558665 GTCACACTTGTTCCCTACC 58 NA Rattus norvegicus 81 Mybbp1a ENSRNOG00000015236 ENSRNOT00000021134 3 1 1 80 10 59002936 59002957 GAACAAATTTGAACGGTTCTGG 59 59002994 59003124 CACATGTAGCTGGATGTATAGGA 60 NA Rattus norvegicus 81 Csf2ra ENSRNOG00000049782 ENSRNOT00000077243,ENSRNOT00000070834 1 2 2 81 14 1463932 1464559 GCTTCGAGAATGAAGGTGC 59 1464604 1464622 TAACAGCACAGGAAGTGGG 60 NA Rattus norvegicus 81 Col19a1 ENSRNOG00000012759 ENSRNOT00000017169 3 1 1 80 9 30790635 30794485 GCAAACCCGTGGATATTGAG 59 30790574 30790592 AGTTGCAACACGATTCTCC 59 NA Rattus norvegicus 81 Atp6v0b ENSRNOG00000019655 ENSRNOT00000026704 3 1 1 81 5 136719929 136719949 TTATCTTCTGTGAAGCAGTGG 58 136719744 136719886 GTAGCACTGAAAGGCTCTG 58 NA Rattus norvegicus 81 Xrcc5 ENSRNOG00000016105 ENSRNOT00000021656 2 1 1 80 9 79664285 79664303 ACCAAGTTCTCAACAAGCC 58 79665946 79667135 TTCTTTCCTATGGTTTCACGC 59 NA Rattus norvegicus 81 Akr1a1 ENSRNOG00000016727 ENSRNOT00000023072 2 1 1 81 5 135483764 135484202 ATCTTGCTCAGATGGCAGG 60 135483701 135483720 GAATGTTCTGAAGGATGCGG 59 NA Rattus norvegicus 81 Atf7ip ENSRNOG00000008870 ENSRNOT00000011803 3 1 1 80 4 170520296 170520318 GATGAAGAGGATATTTCGTGTGG 59 170520358 170522958 CCTTTCTCCCTCTGGAGAG 59 NA Rattus norvegicus 81 Tmem200c ENSRNOG00000049880 ENSRNOT00000072916 3 1 1 163 9 117044773 117044791 GTTCTTTGTGTCTCCCGAG 58 117047693 117047711 ATATCCTCAGTAGGCCACC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mbl2 ENSRNOG00000011637 ENSRNOT00000050984 1 1 1 80 1 248439838 248440560 GAGCTATGAGAAAGTGGGTG 58 248440603 248440621 GCATCCTTCTAACACTGCT 58 NA Rattus norvegicus 81 Mbl2 ENSRNOG00000011637 ENSRNOT00000050984 2 1 1 80 1 248439838 248440560 GAGCTATGAGAAAGTGGGTG 58 248440602 248440621 GCATCCTTCTAACACTGCTC 59 NA Rattus norvegicus 81 Rhoc ENSRNOG00000012630 ENSRNOT00000085355 1 1 2 82 2 207277445 207277463 CATGGCAAACAGGATCAGC 60 207277509 207279004 GATTCCTGGAGTTCTCCCG 60 NA Rattus norvegicus 81 Cyp21a1-ps ENSRNOG00000053116 ENSRNOT00000090245 3 1 1 108 20 4283218 4298980 TGCACTTTCTACAATCTTCCC 58 4283067 4283085 TGTTAGAGTTCAGCACCAC 57 NA Rattus norvegicus 81 Sos1 ENSRNOG00000007106 ENSRNOT00000009359 2 1 1 80 6 3131569 3139931 CCACATGTACGCAGATCCA 60 3131507 3131528 TTCAGTAGTTCTTGAGGTTTGC 59 NA Rattus norvegicus 81 Fmo2 ENSRNOG00000003510 ENSRNOT00000004762,ENSRNOT00000091389 1 2 2 80 13 80764923 80765888 ATTCAGTTTCAGACAACCGT 58 80764862 80764880 CTGAACATACACGTCCCAC 58 NA Rattus norvegicus 81 Krt20 ENSRNOG00000027139 ENSRNOT00000077397,ENSRNOT00000034889 2 2 3 80 10 87345630 87345648 CAAGTCACGGAACTGAGAC 58 87344754 87345587 CTCCAGAGACTCTTTCATGC 58 NA Rattus norvegicus 81 Krt20 ENSRNOG00000027139 ENSRNOT00000091152,ENSRNOT00000034889 1 2 3 85 10 87350678 87350696 GGTACGAAACCAATGCACC 60 87348389 87350632 ATCCTTAATCTGATCTTGCAGC 59 NA Rattus norvegicus 81 Cpne8 ENSRNOG00000026128 ENSRNOT00000039857 3 1 1 80 7 131667376 131667399 CCTTCCTGGACTATATTAAAGGAG 58 131652426 131657716 CAGGGTTTCCATTTGATGC 57 NA Rattus norvegicus 81 Bcl2l15 ENSRNOG00000037149 ENSRNOT00000056068 2 1 1 80 2 206315035 206315053 CAAGTTCAACGGAGAGCTG 59 206315096 206317640 TTGAGTACAGTTCCTGCCTG 60 NA Rattus norvegicus 81 Mfsd5 ENSRNOG00000012832 ENSRNOT00000017110 1 1 2 60 7 143883661 143883679 CCTACTTTCCCTCGCTGTC 60 143883698 143883721 GGTAGAGAAAGTCAACATGAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mgat2 ENSRNOG00000004234 ENSRNOT00000005608 1 1 1 60 6 91477951 91477969 GGAAATTGAAGCAGCAGGA 59 91477993 91478011 GTGGTGTAGGTCCCTAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fmo3 ENSRNOG00000003620 ENSRNOT00000004864 1 1 1 80 13 80845117 80845138 TGGTATATGAAGCAGATGAACG 59 80841924 80845076 CTCCTTCCTGAGTGTTCCA 59 NA Rattus norvegicus 81 LOC687707 ENSRNOG00000042847 ENSRNOT00000067919 2 1 1 83 10 57240302 57240320 CAGACAGCCTCCTTAGGAC 59 57240365 57240478 GGCTGAGATCTCTAACAAGGT 59 NA Rattus norvegicus 81 Wnt2b ENSRNOG00000014385 ENSRNOT00000019349 2 1 1 116 2 207449030 207455086 CGTCCTGGTGGTACATAGG 59 207448932 207448950 CTACTGAGCGCATGATGTC 59 NA Rattus norvegicus 81 Zbtb4 ENSRNOG00000014689 ENSRNOT00000019687 3 1 1 86 10 56383203 56383222 TACTGTGAGAAGGTGTTTGC 58 56383271 56383842 GAAGATGCACTGGTACCTG 58 NA Rattus norvegicus 81 RGD1565283 ENSRNOG00000002972 ENSRNOT00000003979 3 1 1 117 13 88644674 88644692 TTATGTCCTCACTTGCGAC 58 88647606 88647626 CATACGAAGTAGCTGTAAGGG 58 NA DesignNoJunction Rattus norvegicus 81 Myef2 ENSRNOG00000005258 ENSRNOT00000081533,ENSRNOT00000007103 3 2 2 80 3 117365381 117374378 ATTACCACGTGGTCTTGGAG 60 117365320 117365338 GTTATGTTCAGCTGGCTGG 59 NA Rattus norvegicus 81 Zfp324 ENSRNOG00000027436 ENSRNOT00000036874 2 1 1 82 1 65608782 65609248 CTCCATAGGACCCTCTGTC 58 65608718 65608736 TTGTCCTATTGGGAACCCA 58 NA Rattus norvegicus 81 RGD1564719 ENSRNOG00000022393 ENSRNOT00000033396 1 1 1 81 1 91661737 91661904 CTTGCTCGCTTTAGAAATTCTG 58 91661677 91661696 CTGGGAAGTACTGTTCACTC 58 NA Rattus norvegicus 81 Tnfsf13 ENSRNOG00000014171 ENSRNOT00000090762,ENSRNOT00000056903 2 2 2 80 10 56289137 56289466 CTCTGGGAACAGAGTCCTG 59 56289075 56289093 CTGGGTGAGTACTGCTCTC 59 NA Rattus norvegicus 81 Olfml2a ENSRNOG00000014034 ENSRNOT00000018853 1 1 1 80 3 23237672 23237693 GGATCTGATGAAAGTACATGCC 59 23237733 23239585 AGGTTGGTCTTGATGCTCTC 60 NA Rattus norvegicus 81 Arid2 ENSRNOG00000004831 ENSRNOT00000006970 1 1 1 80 7 137733109 137733127 CAATCCAAAGCCACAGCTC 60 137733169 137740172 CGTAGATAATCTGACACGCTG 59 NA Rattus norvegicus 81 Lmbrd1 ENSRNOG00000012178 ENSRNOT00000016887 3 1 1 80 9 30959328 30973462 TGTATGGCTACTATACTCTGTACTC 59 30973495 30973518 CCTCATAGTAGAAGTAGACAAAGG 58 NA Rattus norvegicus 81 Bod1 ENSRNOG00000020717 ENSRNOT00000028115 1 1 1 80 10 16260167 16262067 GACACTAAGCCAGCTTACC 58 16262110 16262129 ATTCCATTCCTGTTTGTCCA 57 NA Rattus norvegicus 81 Bod1 ENSRNOG00000020717 ENSRNOT00000028115 3 1 1 80 10 16262115 16262134 AAACAGGAATGGAATCCTGC 59 16262177 16264321 CAACATGCCTGACTGAACC 59 NA Rattus norvegicus 81 Glyat ENSRNOG00000012142 ENSRNOT00000087526,ENSRNOT00000016454 3 2 2 80 1 229066553 229066571 TTACAAGGTGCACAGATGC 59 229066613 229073652 GGTCCCATAGACCTTTAAGGA 59 NA Rattus norvegicus 81 Kif1a ENSRNOG00000023993 ENSRNOT00000036061 1 1 1 80 9 100218590 100219361 GCACACTGAGATATGCAGAC 59 100218529 100218549 GAATCAGCTTGTTGTTAGGGT 59 NA Rattus norvegicus 81 RGD1560617 ENSRNOG00000004457 ENSRNOT00000038168 3 1 1 60 7 127965777 127965800 CTTCACTGGAGAAGATATTGAGGA 60 127965818 127965837 AGCATCTTCACCTTCTTCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tbx19 ENSRNOG00000002979 ENSRNOT00000063870 2 1 1 80 13 83417432 83417451 GATGAAAGCTCCCATCTCCT 59 83416041 83417392 AGAGAATTCAGCATTATCTGCC 59 NA Rattus norvegicus 81 Bcap31 ENSRNOG00000055756 ENSRNOT00000091792 2 1 1 80 X 157098352 157098371 AGTTGGTAGTGACCTATGGC 59 157098413 157104537 CACGTACAGCATCAATGACC 59 NA Rattus norvegicus 81 Rbx1 ENSRNOG00000058914 ENSRNOT00000086603 2 1 1 87 7 122703500 122705871 TGGATCTTTGTATCGAGTGTC 58 122705920 122708668 AAAGCGTGGTTACAGACTC 58 NA Rattus norvegicus 81 Chadl ENSRNOG00000024631 ENSRNOT00000000205 3 1 1 81 7 122923491 122923916 TGGAGCAGATTTCTCCCAG 59 122923428 122923447 GACTGAAGTTGGTTCTGCTG 59 NA Rattus norvegicus 81 Gpr161 ENSRNOG00000003073 ENSRNOT00000004104 3 1 1 80 13 83568822 83571046 TGGAACAGATCAAAGAGGC 58 83571090 83571108 CTGCATAACTGTCCAAGGA 57 NA Rattus norvegicus 81 RGD1562084 ENSRNOG00000015201 ENSRNOT00000020410 2 1 1 81 8 59955905 59955923 CTGCTGTAGACCTCTCCAC 59 59955968 59972520 AGCCAGTTAGACCCTTCTC 58 NA Rattus norvegicus 81 Ube2f ENSRNOG00000019953 ENSRNOT00000027050 3 1 2 80 9 98398234 98406813 TGCTTGTTAAAGAGGTTGCA 58 98410184 98410203 GAAGCTTGTTTGGATCAGGA 58 NA Rattus norvegicus 81 Efcab9 ENSRNOG00000004142 ENSRNOT00000005509 2 1 1 83 10 17415170 17415188 TCGTTGAGAAACGTGAAGG 58 17409688 17415126 GAACAACACATCATTCAAGGTG 59 NA Rattus norvegicus 81 Fcer1g ENSRNOG00000024159 ENSRNOT00000029179 1 1 1 80 13 89603541 89603560 GTATTGTCCTTACCCTGCTC 58 89602397 89603337 CATCTGATTTCTCACGGCT 58 NA Rattus norvegicus 81 Lrif1 ENSRNOG00000017784 ENSRNOT00000024036 2 1 2 80 2 209444639 209444658 ATACGTTCCTCTGTTGATGC 58 209444701 209445890 CTCATACTGGGTCTGTGGT 58 NA Rattus norvegicus 81 Neu4 ENSRNOG00000019031 ENSRNOT00000065533 3 1 1 106 9 101285030 101286509 CTATTGCTTTACGCTCCCTG 59 101286578 101286596 GGTCAGACCAGTCCTTTCC 60 NA InUTR Rattus norvegicus 81 Kcne1 ENSRNOG00000001984 ENSRNOT00000002717 1 1 1 60 11 32498758 32498777 CCTGTCCAATTCCACAACTG 59 32498717 32498735 CTCATCTGTTTCCTGCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361476 ENSRNOG00000016336 ENSRNOT00000022008 2 1 1 60 20 45445048 45445066 CACCTTTGACAAACACGGA 59 45445006 45445027 ACGGCTTATTCCAAATCTACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr442 ENSRNOG00000033543 ENSRNOT00000041926 3 1 1 60 3 72818059 72818083 CCCTTTCTTATATGTACTTACAGCC 59 72818023 72818044 GCCACTTTCATATTCTCCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nobox ENSRNOG00000025720 ENSRNOT00000029651 3 1 1 83 4 72753832 72754161 GCATCATGGTGTGGTTTCAG 60 72753768 72753792 CAGGACCATTATTATCTTCCTTCTC 59 NA Rattus norvegicus 81 Mcfd2 ENSRNOG00000015059 ENSRNOT00000089104,ENSRNOT00000020328 3 2 2 83 6 10890305 10891009 CGACCAAGAGCACATTATGG 59 10890241 10890259 TGGAGCTGTAGTTCCTGTG 59 NA Rattus norvegicus 81 Ddx43 ENSRNOG00000050868 ENSRNOT00000072933 1 1 1 80 8 85767272 85767515 AAACCTACACCAATTCAGTCAC 59 85767555 85767574 TGTTCCAGTCTGTGCTACTC 60 NA Rattus norvegicus 81 Adcy7 ENSRNOG00000014776 ENSRNOT00000020700 2 1 1 80 19 19708801 19709190 CTAGACAGATTGACTATTACTGCC 59 19708744 19708765 TTGTTTCAAACTCCTCATGCTC 60 NA Rattus norvegicus 81 Cym ENSRNOG00000018236 ENSRNOT00000024593 1 1 1 80 2 209965794 209965813 GTCCTACTTCATAGGCTCAC 57 209964996 209965751 ATTGTGATCCTGTCCACTG 57 NA Rattus norvegicus 81 Ube3d ENSRNOG00000010802 ENSRNOT00000014600,ENSRNOT00000080195 2 2 2 80 8 94008008 94069195 CAGGAATAAAGAGCTTGCCAG 59 94007948 94007966 TCCAAACAGGTTGTGGAGG 60 NA Rattus norvegicus 81 Lats1 ENSRNOG00000014916 ENSRNOT00000020098 3 1 1 80 1 1800473 1802702 TGAAACCAGGAAATGTGCA 58 1802743 1802764 GTCTCTGAGGAACTAAAGACTC 58 NA Rattus norvegicus 81 Coq5 ENSRNOG00000001171 ENSRNOT00000001546 3 1 1 80 12 47079412 47079513 CAAATCAGGAAGAGTTCAAGGAC 60 47079354 47079372 CAATCCCTGAAGTCAGGCT 59 NA Rattus norvegicus 81 Plxnb1 ENSRNOG00000029510 ENSRNOT00000043345 2 1 1 80 8 117847692 117847899 CTTCTTCAGTGGAGGACGAG 60 117847941 117847960 ACAGTCACTCGGATTCTTGG 60 NA Rattus norvegicus 81 Krt36 ENSRNOG00000031805 ENSRNOT00000047580 1 1 1 80 10 88017596 88017615 GAGATCATTGAGCTGAGACG 58 88017379 88017554 TTCCAGAGAATTCCTCATGC 58 NA Rattus norvegicus 81 Krt36 ENSRNOG00000031805 ENSRNOT00000047580 2 1 1 80 10 88019572 88019592 TCTCAGATCCCATACATCTGC 59 88018862 88019530 GGTCAACAGGATCTTCTGC 58 NA Rattus norvegicus 81 RGD1559714 ENSRNOG00000061251 ENSRNOT00000085565 2 1 1 60 2 195278752 195278772 CATCCTTCGAGATTTCCTCCT 59 195278712 195278730 GGTAAGCTTGTCTTCAGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc106 ENSRNOG00000015997 ENSRNOT00000021613 1 1 1 80 1 72334533 72335818 GTAACTTCCCACTTAACAGACAG 59 72334475 72334494 CACCAAATGTAGTCAGTCCC 58 NA Rattus norvegicus 81 Zfp295 ENSRNOG00000001623 ENSRNOT00000041177 1 1 1 87 11 38446703 38446721 AGAACTGTGAAGAGGGCAG 59 38446046 38446652 TTGCCTTGCTCAAACTCCT 60 NA Rattus norvegicus 81 Son ENSRNOG00000002021 ENSRNOT00000002769,ENSRNOT00000043410 3 2 2 84 11 31818579 31818598 AGTAGATCTCCCATTCGTCG 59 31818640 31820187 GAGCCTTATCCAAATCTGTTAGAC 59 NA Rattus norvegicus 81 Nrsn2 ENSRNOG00000023935 ENSRNOT00000032881,ENSRNOT00000081153 3 2 2 107 3 147844224 147849280 CGTTGTGTTGGAAGGTCAC 59 147844135 147844156 CGTTAACAAGCTCTAGTTTGGG 60 NA Rattus norvegicus 81 Defb27 ENSRNOG00000036896 ENSRNOT00000055407 1 1 1 78 3 148073474 148073492 CTGTCCCAGGTCATTCCAG 60 148070103 148070121 CTTTCCTGAGGCACTCCTC 60 NA DesignNoJunction Rattus norvegicus 81 Klf8 ENSRNOG00000039057 ENSRNOT00000041039 2 1 1 80 X 18858824 18859477 ATTTCATCATGAACCAGCGA 58 18858763 18858783 CACTGATGAATCCGTCTTCTC 59 NA Rattus norvegicus 81 Scd1 ENSRNOG00000013552 ENSRNOT00000018447 2 1 1 80 1 264168748 264168766 CACAGGACTTACAAGGCTC 58 264167508 264168705 ATACACATCGTTCTGGAACG 58 NA Rattus norvegicus 81 Igsf5 ENSRNOG00000028216 ENSRNOT00000082098,ENSRNOT00000032566 2 2 3 113 11 36762881 36770740 AGGAAATCTGCAAATGTGAGG 59 36770815 36773593 AGAAGCAATTTGTGCAGCC 60 NA Rattus norvegicus 81 Fam53a ENSRNOG00000017548 ENSRNOT00000023904 1 1 1 80 14 82397658 82397676 TCTCATCACGGAGAAGCTG 59 82397720 82402618 TCAGCAGAATACGGGACAG 59 NA Rattus norvegicus 81 Guca1a ENSRNOG00000015402 ENSRNOT00000020902,ENSRNOT00000065904 3 2 2 85 9 15610530 15610548 CTTTGGCCTCAAGAACCTG 59 15610594 15618405 TATAGCCATCCTTGTTGAAGTC 58 NA Rattus norvegicus 81 Pnlip ENSRNOG00000017725 ENSRNOT00000024065 3 1 1 80 1 279804076 279804754 GGGATCTGGGAAGGAACTC 59 279804798 279804816 GTTGACGATACTGTCGGTG 58 NA Rattus norvegicus 81 Myl12b ENSRNOG00000015733 ENSRNOT00000048125 3 1 1 126 9 119311098 119321425 TTCAGGTCAGATTTGAACCG 58 119310991 119311009 GAACTCCTGGATCTGGGAC 59 NA InUTR Rattus norvegicus 81 LOC499746 ENSRNOG00000010002 ENSRNOT00000013278 2 1 1 80 3 2434195 2434215 TACATCAATGGAGGCAAACAC 59 2434036 2434153 CACAGTAGCATTGGACTGG 58 NA Rattus norvegicus 81 Layn ENSRNOG00000011228 ENSRNOT00000088607,ENSRNOT00000040162 3 2 2 82 8 55464569 55464588 GAGGAGAAACAGCACAACAG 59 55458433 55464526 TACCAGTTCCTGAACTGTGAC 60 NA Rattus norvegicus 81 Ikzf4 ENSRNOG00000005535 ENSRNOT00000019738 2 1 1 83 7 3072542 3074288 GCAAGGGAAGGATAATCTGGA 60 3072479 3072497 AAATGGTTGGAGTCCTGGG 60 NA Rattus norvegicus 81 Zfp949 ENSRNOG00000043223 ENSRNOT00000032976 3 1 1 80 8 96377163 96377183 ATCTTCAAGTTGGAACAGGGA 59 96377225 96378791 CACATTGCAGAAGACTGGC 60 NA Rattus norvegicus 81 Brwd1 ENSRNOG00000001632 ENSRNOT00000002231 2 1 1 80 11 36406930 36410678 TACATCTTTGCAGTTTAGCCC 59 36406870 36406888 AAGCAAACAGTGCCATCAG 59 NA Rattus norvegicus 81 Krt9 ENSRNOG00000014370 ENSRNOT00000019330 1 1 1 80 10 88103937 88104633 TATGAGTCCAAGATGACCCAG 59 88103877 88103896 GGACACTTGCTTCATGTTGG 60 NA Rattus norvegicus 81 LOC691044 ENSRNOG00000028373 ENSRNOT00000057620 3 1 1 80 2 154982608 154988587 AAGGAAGTTCTACAGGTTCAG 57 154988628 154988647 ATCGTAGTCGATTTGGAGAC 57 NA Rattus norvegicus 81 Ftsj3 ENSRNOG00000009857 ENSRNOT00000013295 3 1 1 80 10 94440321 94440339 GGTAAGAAACGAAGCCGTG 59 94440179 94440279 TCGATATTTCACTGGGTCCTC 59 NA Rattus norvegicus 81 AC109707.1 ENSRNOG00000049527 ENSRNOT00000050715 3 1 1 70 13 31752889 31753063 GGCAATCATAGTGGAAGCA 58 31752837 31752857 GACTGGTTGTTGTAATTGCCA 60 NA DesignRelaxed Rattus norvegicus 81 Lrrc52 ENSRNOG00000004356 ENSRNOT00000005768 3 1 1 98 13 85672464 85694469 ATATGGACCACCCAGATGC 59 85672384 85672404 ACATGTACTGGAGTGGATTCC 60 NA Rattus norvegicus 81 Exog ENSRNOG00000014801 ENSRNOT00000020174 3 1 1 84 8 128139845 128149727 AGTTACCAGGTGATCGGTG 59 128149775 128149793 TAGATTCTGGGCTTCTGCG 60 NA Rattus norvegicus 81 Mrps27 ENSRNOG00000017272 ENSRNOT00000088580,ENSRNOT00000023286 3 2 2 84 2 29614433 29614454 TGATCTTGCATCCTTAATGGAC 59 29614499 29616643 AATGTTGTCCACAAACCGA 58 NA Rattus norvegicus 81 Maea ENSRNOG00000005397 ENSRNOT00000007181 2 1 1 80 14 82665265 82665754 TGTCTATGGCTACAATTCTCTG 58 82665206 82665225 AAGTGGAAGACTTCTTTGGT 57 NA Rattus norvegicus 81 LOC690142 ENSRNOG00000025898 ENSRNOT00000010990 3 1 1 81 7 132391622 132394004 GAACAAACAGTTCAGAAACTGG 58 132394043 132394064 TAAAGAATTCCACACTCGTCAC 59 NA Rattus norvegicus 81 Tmub2 ENSRNOG00000020916 ENSRNOT00000082722,ENSRNOT00000055185 2 2 2 85 10 90231208 90232778 AACCTTATGAGCGTGGACC 60 90232827 90232845 ATCACCTCGTTACCCACAC 59 NA Rattus norvegicus 81 Uba7 ENSRNOG00000029195 ENSRNOT00000068295,ENSRNOT00000084429 2 2 2 80 8 116760056 116760074 TTTGTAGTAGCAGCGACAG 58 116760118 116760229 GATGGTTTGCTTGATCCGA 58 NA Rattus norvegicus 81 Mboat7 ENSRNOG00000054459 ENSRNOT00000078640 3 1 1 80 1 64101077 64101201 CCTCTTTAAGAAAGCTGGACC 59 64101242 64101261 CCACAGGTGAATAAGGTGAG 58 NA Rattus norvegicus 81 Dnajb3 ENSRNOG00000023172 ENSRNOT00000025300 1 1 1 60 9 95290587 95290605 CGATGCCTTCCAGTATGTC 58 95290545 95290564 GAAGAACTCCCTGAAGACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103693683 ENSRNOG00000046663 ENSRNOT00000071728,ENSRNOT00000091821,ENSRNOT00000071897,ENSRNOT00000073643 3 4 4 80 13 91154321 91154339 ACAGTGGAGAATACCGGTG 59 91149659 91154277 GCAGCCAGTCAGAAATCAC 59 NA Rattus norvegicus 81 Smarcd2 ENSRNOG00000010557 ENSRNOT00000014508 3 1 1 82 10 94454755 94455170 CTGGATGATCCTAGCAAACAG 59 94454693 94454711 CCATACAGCTCCTTGTCCA 59 NA Rattus norvegicus 81 Olr1768 ENSRNOG00000058820 ENSRNOT00000077744 2 1 1 60 X 156210020 156210038 AACCACACCTTAAGCTCTG 57 156210062 156210080 TCTGTAGTTCAGCCAGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spz1 ENSRNOG00000013050 ENSRNOT00000017408 1 1 1 60 2 22146807 22146825 TTCTCCATCTCCTAGCCCT 59 22146765 22146783 GGTGATCCCAGTATTCGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Brs3 ENSRNOG00000000873 ENSRNOT00000001164 3 1 1 82 X 159505712 159505731 AAAGTGCTTTCCTTCATCCG 59 159505776 159507338 GCTTTGTATCTGTCAGCGC 60 NA Rattus norvegicus 81 Fxyd2 ENSRNOG00000016469 ENSRNOT00000064611,ENSRNOT00000022074 2 2 2 80 8 49715461 49715768 CGAGTATGACTATGAAACCGTC 59 49715809 49715827 AGGAGAATGAGGAGTCCCA 59 NA Rattus norvegicus 81 Nup62 ENSRNOG00000048733 ENSRNOT00000074847 3 1 1 100 1 100811813 100824824 GACATCTTCCCAAGGTTGC 59 100824887 100824906 GCCTCCAAAGTTAAACCCAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Sln ENSRNOG00000009047 ENSRNOT00000011974 1 1 1 109 8 58431421 58435390 TCTCTTCAGGACGTGAAGAC 59 58435462 58435480 AAACAGCTCCTGGGTAGAC 59 NA InUTR Rattus norvegicus 81 Krtap31-1 ENSRNOG00000036838 ENSRNOT00000055286 1 1 1 60 10 87833155 87833173 TGCTTCCTACCAACTTGCT 59 87833197 87833215 AGGTGGGTTTAATCGAGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1667 ENSRNOG00000028439 ENSRNOT00000038213 2 1 1 60 19 24670792 24670813 CTGTTCCTCTACTTGTTCACTC 59 24670834 24670852 CTAGCACAATGGTGGAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srebf2 ENSRNOG00000007400 ENSRNOT00000082603,ENSRNOT00000056041 3 2 2 80 7 123412247 123412767 ACTGGAGTCAGGTTCTGGA 60 123412809 123412829 AAGACAATCACACCGTTTAGC 59 NA Rattus norvegicus 81 Pcsk7 ENSRNOG00000017478 ENSRNOT00000023677 1 1 1 80 8 50204293 50206194 AGCCGAATAGCAGGTATCC 59 50206235 50206256 CTGATAGTGTTTGTTGAATGCC 58 NA Rattus norvegicus 81 Stxbp3 ENSRNOG00000020392 ENSRNOT00000027666 1 1 1 80 2 211628467 211628485 GATGACTTCACCACCAGAC 58 211627429 211628426 ATTCTCTATAACTGTCACACCC 57 NA Rattus norvegicus 81 Zfp563 ENSRNOG00000030273 ENSRNOT00000066520 3 1 1 81 7 15422831 15424652 AGGAGAAGTCTGAGAAGTGG 59 15424694 15424714 ACTCGCTGAAGATTTCTTCAC 59 NA Rattus norvegicus 81 Eif5a ENSRNOG00000016478 ENSRNOT00000022343 2 1 1 94 10 56528018 56528036 GTACGAGAGGACCTTCGTC 59 56527852 56527960 GACAGCACTGTGATCAGGA 59 NA Rattus norvegicus 81 Tceal5 ENSRNOG00000046280 ENSRNOT00000073529 3 1 1 60 X 106747238 106747256 AAGGGCAGAAGATGAAGGA 58 106747196 106747217 ATCTGACTTGTCTTCATCTGCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tuba1c ENSRNOG00000021438 ENSRNOT00000033450 1 1 1 80 7 140719973 140719991 CTTCAGTGAGACAGGAGCT 59 140720032 140720184 CGAACTTCATCAATAACTGTGG 58 NA Rattus norvegicus 81 Krt34 ENSRNOG00000051302 ENSRNOT00000076582 1 1 3 60 10 87950086 87950104 CAAGTCTCCATTTCCTGCC 59 87950044 87950062 GTTGTCTCCTTGCATTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Angpt1 ENSRNOG00000005854 ENSRNOT00000007979 1 1 1 80 7 81360311 81360330 TGATTTCAGCACAAAGGACG 59 81342627 81360268 TCAAACCACCAACCTCCTG 60 NA Rattus norvegicus 81 Selm ENSRNOG00000061231 ENSRNOT00000081123 1 1 1 80 14 83754152 83754484 ACATTCAACTGTACCACAACC 59 83754523 83754544 GGTAATTTCGGCTTAACAACAC 59 NA Rattus norvegicus 81 Dbi ENSRNOG00000046889 ENSRNOT00000072295 1 1 2 83 13 36147914 36150852 GCTGAAAGGAACTTCCAAGG 59 36141968 36141986 TTAGAGCTGGAGTTGCTGG 59 NA Rattus norvegicus 81 LOC100910143 ENSRNOG00000050374 ENSRNOT00000075415 3 1 1 80 14 1589475 1590359 CACTGTTGTCAAAGGACAGAG 59 1589415 1589434 TCCCTGTTTCAGACATTCCA 59 NA Rattus norvegicus 81 Iqgap2 ENSRNOG00000025406 ENSRNOT00000035017 2 1 1 80 2 26225712 26225731 AAAGAAGGCTCTTGGATCCC 60 26225004 26225673 CACGATGTCCTCAATTTCTTCTC 60 NA Rattus norvegicus 81 Rad9a ENSRNOG00000018729 ENSRNOT00000025317 3 1 1 83 1 219449334 219449719 CTGTAAGATCCTGATGAAGTCCT 60 219449273 219449291 GAGATGCAGCACTTCTCCA 60 NA Rattus norvegicus 81 Ccdc93 ENSRNOG00000002514 ENSRNOT00000003435 2 1 1 80 13 37404005 37407323 TTCGACAAGGTAGTAGGAGG 58 37407365 37407384 TTCCTGAAAGAGCAAATCCA 58 NA Rattus norvegicus 81 RGD1564285 ENSRNOG00000050249 ENSRNOT00000071008 2 1 1 60 7 20069446 20069465 CAGACACAATGTAGCCAGGA 60 20069405 20069426 CTTCTTAGTACCGTATAGGGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnttip1 ENSRNOG00000014933 ENSRNOT00000020280,ENSRNOT00000083553 3 2 2 80 3 161235256 161235378 ATGACTACAGAGGATGCTTGG 60 161235419 161235438 GCATCTTCTCAACCATCCAG 59 NA Rattus norvegicus 81 R3hdml ENSRNOG00000027432 ENSRNOT00000031868 3 1 1 81 3 159887397 159887415 CGCCTTGCTGGATTATCAC 59 159887457 159890798 CTCATCCCAAACCATATACTCC 58 NA Rattus norvegicus 81 Mak16 ENSRNOG00000010783 ENSRNOT00000015297 3 1 1 80 16 64736668 64736852 GAGTGACTTTGAGGATATGGA 57 64736893 64736912 TTATGAGCCTCTTCTTCACG 58 NA Rattus norvegicus 81 Abhd12 ENSRNOG00000036934 ENSRNOT00000010641 2 1 1 80 3 146644769 146646860 ACTATTGGAGTCTGGCACAC 60 146644708 146644728 AGCATCCTCATACCACATCTG 60 NA Rattus norvegicus 81 Serpini2 ENSRNOG00000009903 ENSRNOT00000013452 3 1 1 81 2 173652248 173654247 TCTGGAATAACAGACTCATCTG 57 173652188 173652209 CACTTCCGTCTTCATTTATCTC 57 NA Rattus norvegicus 81 Rnf150 ENSRNOG00000003479 ENSRNOT00000004621 3 1 1 90 19 24221049 24263928 CAACTAACAGTGACCAAGAGC 59 24263979 24263998 AGTTCTACATCAGACAGCCC 59 NA Rattus norvegicus 81 LOC100909882 ENSRNOG00000048892 ENSRNOT00000074742 2 1 1 60 2 46211320 46211341 TTGTGGTCTTTGTTCTAGTTGG 59 46211362 46211380 GAGACAAACGTGGTACTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scoc ENSRNOG00000003853 ENSRNOT00000005124 2 1 1 112 19 24587731 24587749 ATGAATGCTGACATGGACG 58 24585901 24587336 GCAGAAAGATCTTCAAGTGTG 58 NA Rattus norvegicus 81 Cmtm8 ENSRNOG00000011201 ENSRNOT00000015188 3 1 1 93 8 122855379 122904430 ATAGCTGAGATCGTCCTGG 58 122855304 122855323 CTACAAACATTACCCAGCCA 58 NA Rattus norvegicus 81 Gnat2 ENSRNOG00000019296 ENSRNOT00000026237 3 1 1 80 2 210888807 210888828 CAACAAGAAGGACCTCTTTGAG 59 210888867 210889321 GAATTGTTGCCGTCATACTCC 60 NA Rattus norvegicus 81 Idh3a ENSRNOG00000010277 ENSRNOT00000015102 1 1 1 80 8 59176238 59176257 CGAGTTTGCCTTTGAGTACG 60 59176299 59177854 GACATCCTCATGATGTTGGC 59 NA Rattus norvegicus 81 Cc2d1a ENSRNOG00000006747 ENSRNOT00000045180,ENSRNOT00000009806 2 2 2 80 19 25247895 25247999 TAGAAAGGAAGATCCTGGCC 59 25247834 25247853 GTACTACGTCCTGGTACTGC 60 NA Rattus norvegicus 81 Cd79b ENSRNOG00000011917 ENSRNOT00000015976 3 1 1 80 10 94498138 94498446 TAGACAAGGATGACAGCAAGG 60 94497979 94497997 CATAGGTGGCTGTCTGGTC 60 NA Rattus norvegicus 81 Olr93 ENSRNOG00000047377 ENSRNOT00000021179 1 1 1 60 1 168464307 168464325 CAAGCGTTATAGCCTTGGT 58 168464265 168464286 GGCAATGAAGAAACAATCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chrna6 ENSRNOG00000012283 ENSRNOT00000016452 2 1 1 80 16 68862157 68863231 GGCCAATGTGGATGAAGTC 59 68864176 68864197 CAACACAATCTGTAGTCCTTCC 59 NA Rattus norvegicus 81 Hnf4a ENSRNOG00000008895 ENSRNOT00000089893,ENSRNOT00000011978,ENSRNOT00000078703 3 3 3 82 3 159941308 159942243 ACTCCTGCAGGTTTAGCAG 60 159942289 159942307 GAAGCACTTCTTGAGCCTG 59 NA Rattus norvegicus 81 Ugcg ENSRNOG00000015644 ENSRNOT00000088872,ENSRNOT00000021110 2 2 2 80 5 76414449 76415251 CAATCCAGAATGATCAGGTGG 59 76415292 76415311 GCATTCTGAAATTGGCTCAC 58 NA Rattus norvegicus 81 Rpl39 ENSRNOG00000038654 ENSRNOT00000059010 3 1 1 60 X 33722051 33722070 CAGAATCAAGCGATTCCTGG 59 33722010 33722030 AATCCATTGAGGAATAGGACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sigirr ENSRNOG00000015593 ENSRNOT00000054874 3 1 1 80 1 213899960 213900215 GGGAGGTAGAGATGAATGATGG 60 213899901 213899921 TTACAAATTTGCGGTCCTCTG 59 NA Rattus norvegicus 81 LOC100365450 ENSRNOG00000047004 ENSRNOT00000074724 1 1 1 121 3 122929240 122929258 AACAGTCTTCTCAACGGCT 59 122929426 122929444 CTGTTGGGAGAAGTCTGTG 58 NA DesignNoJunction Rattus norvegicus 81 Wls ENSRNOG00000036816 ENSRNOT00000055245,ENSRNOT00000080305 1 2 2 80 2 266399372 266401251 TGGAACAGAACTGGCTATGG 60 266401292 266401312 ACCATGAAACACAGAAACAGG 59 NA Rattus norvegicus 81 Pidd1 ENSRNOG00000049179 ENSRNOT00000072774 2 1 1 80 1 213983431 213983529 ATGTAGATGCTGACCGTCC 59 213983369 213983390 CCTCCTTCATATTCTTCAGGTG 58 NA Rattus norvegicus 81 Rhog ENSRNOG00000020393 ENSRNOT00000027641,ENSRNOT00000076499,ENSRNOT00000076592 1 3 3 137 1 167337326 167347638 GGTCACTACTTCCAGTGGG 59 167337207 167337225 TAGCAGATGAGAAGGCACG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mesp2 ENSRNOG00000014925 ENSRNOT00000020047 2 1 1 80 1 141551534 141551553 AGAGCCTAGGAACAAGACTG 59 141551594 141552364 ACAGAAAGACTCTGGTACACC 60 NA Rattus norvegicus 81 Mesp2 ENSRNOG00000014925 ENSRNOT00000020047 3 1 1 80 1 141551539 141551557 CTAGGAACAAGACTGGGCA 59 141551599 141552369 GAGACACAGAAAGACTCTGGT 60 NA Rattus norvegicus 81 Plbd2 ENSRNOG00000001385 ENSRNOT00000001872 1 1 1 80 12 41617049 41617671 AACATCCCGTACTTTGAGAG 57 41617714 41617732 GTAGGAGAACCAATCTCCG 57 NA Rattus norvegicus 81 Chia ENSRNOG00000033162 ENSRNOT00000086321,ENSRNOT00000041562 3 2 2 80 2 208778024 208779169 TTTGGAACTGCTCCTTTCAC 59 208779210 208779230 CAGGAATTTGATGACTGAGGT 58 NA Rattus norvegicus 81 Stag1 ENSRNOG00000015389 ENSRNOT00000079618,ENSRNOT00000066917 3 2 2 80 8 109243299 109243321 CTCAAGAACTGTTGAAAGACTGG 60 109243361 109250473 CAGACATGGCTTCCTCTCC 60 NA Rattus norvegicus 81 Hps4 ENSRNOG00000000661 ENSRNOT00000079256,ENSRNOT00000000824 1 2 2 80 12 50297444 50297462 GTCCTGCTTCATCACACTG 59 50293964 50295227 TAATGCTGGTCCTGTTTCCT 59 NA Rattus norvegicus 81 Mapk10 ENSRNOG00000002079 ENSRNOT00000065965 3 1 1 80 14 8242684 8242705 TCAACCTTCACAGTTCTAAAGC 59 8242744 8288116 ATACGCAGCACAAACTATTCC 59 NA Rattus norvegicus 81 Pwwp2b ENSRNOG00000036649 ENSRNOT00000023619 3 1 1 66 1 211582229 211588439 AAGTCTGGTCTCTTTGGCC 60 211588469 211588487 TGATGGCAGAGGAGTTGTC 59 NA DesignNoJunction Rattus norvegicus 81 Dnhd1 ENSRNOG00000051291 ENSRNOT00000081667 2 1 1 80 1 170494265 170494284 TCCTGAAGACTCATCTGCTG 59 170494326 170496381 GAAACTCCTGAAGAAGCCTG 59 NA Rattus norvegicus 81 Cd1d1 ENSRNOG00000016451 ENSRNOT00000022150 1 1 1 80 2 186332826 186333124 TCACCTAAAGAAGACTATCCTATCG 60 186332770 186332790 AAAGCTTTCTGAAGCATTCCC 60 NA Rattus norvegicus 81 Irak3 ENSRNOG00000004226 ENSRNOT00000005686 1 1 1 80 7 64928261 64928281 CATGCCGGAAGAATACATCAG 59 64927752 64928221 ACTTCCATGATCACGATTCCA 60 NA Rattus norvegicus 81 RGD1564173 ENSRNOG00000047496 ENSRNOT00000056621 1 1 1 60 X 142345085 142345104 CGGTACCAACGTGAAATGAG 59 142345127 142345145 GATCCCTCCTTCTTCGCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr94 ENSRNOG00000036811 ENSRNOT00000055227 2 1 1 60 1 168470453 168470473 TCCTTTATACTGTCTTCCGTC 57 168470413 168470432 CATGTTCCCAAGGTCTTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Anxa5 ENSRNOG00000014453 ENSRNOT00000019554 3 1 1 80 2 123165479 123165500 GGATTTCAGATTGAGGAAACCA 59 123163787 123165439 AATAGACTTCACGACAGCCA 59 NA Rattus norvegicus 81 Cpq ENSRNOG00000005931 ENSRNOT00000008211 2 1 1 80 7 71880405 71880427 AGACCTATCCAGATACAGATTCC 59 71880467 71975575 TGACCAGGACAACTTCCTC 59 NA Rattus norvegicus 81 Bcl2 ENSRNOG00000002791 ENSRNOT00000003768 3 1 1 74 13 26768600 26768619 ATGACTGAGTACCTGAACCG 59 26605775 26768563 TAGTTCCACAAAGGCATCC 57 NA DesignNoJunction Rattus norvegicus 81 Trhr ENSRNOG00000005048 ENSRNOT00000006783 2 1 1 80 7 83147058 83147077 GTCACTGACACGTATGTGTC 59 83147118 83151679 AGAACTGGGTCCATTCTTCTC 60 NA Rattus norvegicus 81 Cadm1 ENSRNOG00000018778 ENSRNOT00000052392,ENSRNOT00000079797 2 2 2 81 8 52127775 52129349 CTTCAGGCCTTTGAAGGAC 59 52129392 52129412 TGAGACATTTGTCAGTGACAC 59 NA Rattus norvegicus 81 Kif17 ENSRNOG00000014970 ENSRNOT00000020215 3 1 1 80 5 156663354 156663373 GCTAGTAACTACTTCCGCTC 58 156663415 156665533 TGAGTTGTGATAAGTGAGGC 58 NA Rattus norvegicus 81 Pfdn4 ENSRNOG00000050932 ENSRNOT00000070809 3 1 1 70 3 168130007 168130906 GAAACACCTCCAGAATTTAGAGG 59 168130935 168130954 GAATCATCAAGCAGTCGTCG 60 NA DesignNoJunction Rattus norvegicus 81 Lrrc71 ENSRNOG00000014937 ENSRNOT00000020147 2 1 1 80 2 187110649 187110670 AAATTGAAGAACGGATTCTGGG 59 187110437 187110608 CCTTCCACAAGTTGATGGC 59 NA Rattus norvegicus 81 Eras ENSRNOG00000048396 ENSRNOT00000071835 3 1 1 60 X 15322067 15322086 GTCTTTGCTCTTGATGACCC 59 15322109 15322127 TCCAGGTGGAGCATATCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tfip11 ENSRNOG00000000663 ENSRNOT00000000828 1 1 1 80 12 50323349 50323367 CACACCCTTCTGTCAAGGA 59 50321883 50323307 TGTAGGCACCAACATTAGAGG 60 NA Rattus norvegicus 81 RGD1311745 ENSRNOG00000004135 ENSRNOT00000005502,ENSRNOT00000087493 3 2 2 80 8 132030092 132030743 CAAAGCAGATGAAGAACCACC 60 132030032 132030052 CACTTCTCATCTGAGGAACGT 60 NA Rattus norvegicus 81 Svep1 ENSRNOG00000033110 ENSRNOT00000047200,ENSRNOT00000085698 1 2 2 80 5 75191810 75192864 CATCTTCTGCTCTGATTGCC 59 75191749 75191767 GAACCTGGCTTTCGATCTC 58 NA Rattus norvegicus 81 AABR07067459.1 ENSRNOG00000061227 ENSRNOT00000086086 2 1 1 74 9 47065012 47065031 TATCCACCCTGATGCTTTCC 60 47062550 47062568 CTTGTGATGCTGGCAAAGG 60 NA DesignNoJunction Rattus norvegicus 81 Ssx2ip ENSRNOG00000015425 ENSRNOT00000084034,ENSRNOT00000041186 2 2 2 80 2 252275978 252280096 ACGCCAAACTTAAGGAACAG 59 252280139 252280157 TGCACTGTAGCTGTCTGTC 60 NA Rattus norvegicus 81 Pramel6 ENSRNOG00000021920 ENSRNOT00000035844 3 1 1 81 3 75561002 75561022 CTGGAGACTTTGAAAGCACTG 60 75561064 75561518 GAACTCTGAGTTTGCACCTG 59 NA Rattus norvegicus 81 Pitpnb ENSRNOG00000000665 ENSRNOT00000052202,ENSRNOT00000066892 2 2 2 80 12 51335170 51337547 GTTCAAGAGTATCAGGTTGGA 58 51335110 51335128 TTCGATTCCTTCTCCACCA 58 NA Rattus norvegicus 81 Zfp787 ENSRNOG00000015456 ENSRNOT00000084899,ENSRNOT00000059069 3 2 2 81 1 71434848 71434866 GAAGAAGCTTGGTCTCCAG 58 71434911 71445500 TGATGAGGATGTCCACTGG 59 NA Rattus norvegicus 81 Slc25a39 ENSRNOG00000020994 ENSRNOT00000028496 2 1 1 80 10 90352267 90352388 GGACTCTTTGCAGGTTTCC 59 90352205 90352223 GCCAAACTCGTAAGTGCTG 60 NA Rattus norvegicus 81 Uqcr10 ENSRNOG00000059061 ENSRNOT00000083839 2 1 1 116 14 84937643 84937661 GACTTCTACCTTCGCCCTC 60 84935715 84937564 TGCTTTGTTGTCAGTTTCCC 59 NA Rattus norvegicus 81 Tirap ENSRNOG00000021420 ENSRNOT00000038312 3 1 1 80 8 36386472 36388143 AAGATAGCTGACTGGTTCAGG 60 36386412 36386430 ATCACTGAGGTGGCTTTCC 60 NA Rattus norvegicus 81 Htra3 ENSRNOG00000008182 ENSRNOT00000010852 2 1 1 80 14 80256604 80259900 TATAGAGCTCTTTCTGAGGCAC 60 80259940 80259959 GCTTCTGACATGATGAAGCC 59 NA Rattus norvegicus 81 Defb22 ENSRNOG00000007525 ENSRNOT00000009913 1 1 1 93 3 147962146 147965791 TTGGTCACAGGTAACTGGT 59 147962071 147962089 CAGGGTCTGTCTGGTACTC 59 NA Rattus norvegicus 81 Ywhah ENSRNOG00000055471 ENSRNOT00000085735,ENSRNOT00000086769 2 2 2 60 14 83053954 83053972 CCTCTTAGCCAAACAAGCC 59 83053912 83053932 ATCCTCGTTTAATGTGTCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Abra ENSRNOG00000007999 ENSRNOT00000010539 2 1 1 116 7 80796065 80796084 ATAGACACAGAGGACAGTGG 59 80793181 80795986 GTATCTGTTTGCCTGGGAG 58 NA Rattus norvegicus 81 Trappc2 ENSRNOG00000042276 ENSRNOT00000068113 3 1 1 81 X 29556542 29556561 GTTGGCCACCATGATAATCC 59 29553974 29556500 GATGACGGTGATCATCTTTGG 59 NA Rattus norvegicus 81 Olr1087 ENSRNOG00000007348 ENSRNOT00000009615 3 1 1 60 7 13997063 13997081 CCATGTATCTGGTCACCGT 59 13997103 13997123 CAGTCTGATATGATGGCTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fiz1 ENSRNOG00000016574 ENSRNOT00000022236 3 1 1 63 1 72382075 72382093 GATTCCGAGACTCCACTGG 60 72385131 72385149 CAGTAGGGCTTCTCACCAG 60 NA DesignNoJunction Rattus norvegicus 81 Bche ENSRNOG00000009826 ENSRNOT00000013279 1 1 1 89 2 171121779 171121797 AACTCTAAACTCCGGGCTC 59 171104581 171121730 CTCCCTTTCATCAATATCTCCTG 59 NA Rattus norvegicus 81 Inpp1 ENSRNOG00000012375 ENSRNOT00000016842 2 1 1 80 9 53562930 53562948 GCTGCAGATTTCAAGACCC 59 53562990 53565204 CAAGCCTGGAAACTTGTTCTC 60 NA Rattus norvegicus 81 RT1-CE6 ENSRNOG00000061639 ENSRNOT00000061297 3 1 1 93 20 4675219 4675238 TGATCATTGGAGCTCTGGTG 60 4674779 4674987 CTGTCCTTGCCTAGAGCAG 60 NA Rattus norvegicus 81 Ttll13 ENSRNOG00000056362 ENSRNOT00000090006 2 1 1 80 1 142042311 142043134 TTCTAGAGGTAAACCACTCCC 59 142043176 142043194 CATCACAGAGAAGTGCGTC 59 NA Rattus norvegicus 81 Dock6 ENSRNOG00000010652 ENSRNOT00000064551,ENSRNOT00000090424 2 2 2 80 8 22853902 22853921 CTTCTACCATGTTAGCTGCC 59 22853733 22853861 TGTAACAGAGGAATCCAAGTG 58 NA Rattus norvegicus 81 Kat2b ENSRNOG00000011871 ENSRNOT00000061882 2 1 1 80 9 4447433 4447453 TCAAGTAAAGAGCCCAAAGAC 58 4447271 4447391 GCTTTGATGGCTCTTCACC 59 NA InUTR Rattus norvegicus 81 RGD1565459 ENSRNOG00000033613 ENSRNOT00000042056 2 1 1 73 10 97505243 97505261 CAACTACAGCAAGCTGCTG 60 97505188 97505206 AGTTGATGTAGACCCGGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cand1 ENSRNOG00000007834 ENSRNOT00000010720 1 1 1 80 7 62140450 62151275 ACTTAGCTGTGAAATGTCTTGG 59 62140391 62140411 TACAGAGGGTGTCTACAATCG 59 NA Rattus norvegicus 81 AABR07055728.1 ENSRNOG00000032682 ENSRNOT00000004472 2 1 1 83 7 8504764 8504785 TTATGTGGCCATCAAACCT 57 8504831 8504850 GCAAACCATGAGCTAAAGAC 58 NA Rattus norvegicus 81 Rnf170 ENSRNOG00000045943 ENSRNOT00000071258 2 1 1 80 16 70699743 70699762 TGTCCAATCTGCTTACACCA 59 70693218 70699701 TGCAATTATGCAGGAACCAC 59 NA Rattus norvegicus 81 Rnf170 ENSRNOG00000045943 ENSRNOT00000071258 3 1 1 80 16 70702937 70705001 TGCACTACTCAGAAATGTACAG 58 70702878 70702898 GTTTGAAGTTGTTCTCGAAGC 58 NA Rattus norvegicus 81 Fgfr3 ENSRNOG00000016818 ENSRNOT00000023144,ENSRNOT00000080695 2 2 2 80 14 82275012 82275148 CCCAGAAGTGTATTCACAGAG 58 82274952 82274973 CAAAGTCTGCAATCTTCATCAC 58 NA Rattus norvegicus 81 Vom1r57 ENSRNOG00000057670 ENSRNOT00000082786 1 1 1 60 1 66687953 66687971 AGGGACGAATCAACTTCAC 58 66687911 66687932 CTACTTTGGCAGTATATCTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nlrp5 ENSRNOG00000022994 ENSRNOT00000041542 2 1 1 80 1 71459705 71461633 CTTCAAGACCTGGAACTAGTG 58 71459645 71459666 CTTGGTTGTTGTGATCATACAG 58 NA Rattus norvegicus 81 Olr1105 ENSRNOG00000032839 ENSRNOT00000051304 2 1 1 60 7 139953899 139953919 CCTGTTCCTTCTGGTTTACCT 60 139953859 139953878 AATCACGAACAACATCAGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fcho2 ENSRNOG00000015334 ENSRNOT00000020692 1 1 1 80 2 29012813 29012833 ACAATAGAAGAGGCATACTCC 57 29006312 29012772 TGCAAATGTTCCAAGTTGTG 58 NA Rattus norvegicus 81 Olr83 ENSRNOG00000050132 ENSRNOT00000046793 2 1 1 60 1 168327762 168327782 CTCTATGTGGTCATTCCTCCC 60 168327804 168327822 TCTGCTTTGTTCTCACACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Axin2 ENSRNOG00000055010 ENSRNOT00000088599 2 1 1 80 10 97233054 97234630 CCTGGCTTCAGAAGATCAC 58 97234674 97234692 TAGGTAACAATCAGCTCGC 57 NA Rattus norvegicus 81 Leap2 ENSRNOG00000007218 ENSRNOT00000049820 1 1 1 60 10 38774415 38774434 CTCTTTGCAGTGCTTCTGAC 60 38771239 38771257 GATGAACGTGGACAAGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Bmx ENSRNOG00000003705 ENSRNOT00000005181 3 1 1 80 X 32032927 32032948 TGGCTGTAAAGATGATCAAGGA 60 32032988 32035497 GGCTGAGTTTCATCATGGTC 59 NA Rattus norvegicus 81 Got1l1 ENSRNOG00000038473 ENSRNOT00000035985 3 1 1 80 16 69026047 69026068 CTTGTGATTGGGAACATCTCTG 59 69026107 69026223 CTGCTTGCTCTTAATGATGGA 59 NA Rattus norvegicus 81 Asb11 ENSRNOG00000003452 ENSRNOT00000041515 2 1 2 80 X 31710479 31710499 TCGGAACACCTCTATATGTGG 59 31708582 31710437 TCACAGATGCTCCTGACTC 59 NA Rattus norvegicus 81 Vps13a ENSRNOG00000025539 ENSRNOT00000014800 3 1 1 80 1 235721390 235724366 CTGAAGATGACTCAGAGGAGG 59 235721330 235721351 CAACTCTACATGACACTTGAGG 59 NA Rattus norvegicus 81 LOC100360049 ENSRNOG00000046322 ENSRNOT00000030776 1 1 1 64 8 37349671 37349689 AAAGGACATCTTGCTGCTC 58 37348786 37349644 ATGTCAAAGCTTGCATGGAG 59 NA DesignRelaxed Rattus norvegicus 81 Nucb1 ENSRNOG00000020889 ENSRNOT00000028390 3 1 1 80 1 101491739 101491757 ATCAACGTGCTAGAGACAG 57 101490479 101491697 CAGCTTTCCACTCTTAATGTC 57 NA Rattus norvegicus 81 Itga9 ENSRNOG00000043167 ENSRNOT00000015113 2 1 1 80 8 127527521 127546122 TTCAGGACATGGTGGTGAG 59 127546165 127546184 GTTCTTGAGGGATGATGCAG 59 NA Rattus norvegicus 81 Mrps36 ENSRNOG00000061213 ENSRNOT00000084294 1 1 1 80 2 30744562 30744580 GTAGTGAAGCCACATGCTC 59 30742319 30744519 TCTCAAAGTGTCTGAAGCAC 58 NA Rattus norvegicus 81 Tbpl1 ENSRNOG00000011114 ENSRNOT00000014805 3 1 1 83 1 24000108 24000129 GTGTGCTATCGGATAAAGTCTC 59 24000173 24002001 CTTTACATTGGGCCCTGTC 59 NA Rattus norvegicus 81 S100pbp ENSRNOG00000007099 ENSRNOT00000009436 3 1 1 80 5 147365105 147366633 CAAACAGACATGCCTTTGAC 58 147365044 147365062 TTTGTAGCACAGGGATGAC 58 NA Rattus norvegicus 81 Ttpal ENSRNOG00000009076 ENSRNOT00000012606 1 1 1 80 3 160000563 160000581 TCTGGATTCCTCACAGTGC 59 160000625 160004242 CGGTATCCATCTGTCTGGT 59 NA Rattus norvegicus 81 Xcr1 ENSRNOG00000006620 ENSRNOT00000008747 3 1 1 133 8 132915612 132919029 CTCAGACTCAGATGCTCTCAG 60 132915499 132915519 GGACAATGGTGAAGATGATGG 59 NA Rattus norvegicus 81 Crybb1 ENSRNOG00000047653 ENSRNOT00000073072 1 1 2 81 12 50393161 50396978 ATCAGGATGGATTCCCAGG 59 50393098 50393116 CCTCTTGGATCTCCATGGT 59 NA Rattus norvegicus 81 Ddx4 ENSRNOG00000026686 ENSRNOT00000013035 3 1 1 80 2 44490564 44490583 AGATGGACCTTCTGGAAGAG 59 44485859 44490523 TCGCCAATATCTCTGTTTCCT 59 NA Rattus norvegicus 81 Prss45 ENSRNOG00000029649 ENSRNOT00000043249 1 1 1 80 8 119117725 119118001 CCGTGCTATGGAGATCCTG 60 119118045 119118063 CTCCCACGAGAATATGCCA 59 NA Rattus norvegicus 81 Igf1r ENSRNOG00000014187 ENSRNOT00000019267 1 1 1 80 1 129159257 129159275 GTGACAGGAACAAAGGGAC 58 129159318 129161178 ATCACTTTCACAGGAAGCTC 58 NA Rattus norvegicus 81 Gstm6l ENSRNOG00000047108 ENSRNOT00000051261,ENSRNOT00000052403 1 2 2 80 2 210747435 210747454 AATGTTTGTACCCAAGTGCC 59 210745970 210747393 GAGATCTTCTTCAGGCCCTC 60 NA Rattus norvegicus 81 Klk10 ENSRNOG00000030281 ENSRNOT00000048240 2 1 1 81 1 99720981 99721641 CCGAAGAGTGAAATACAACAGG 59 99721683 99721701 CGGGTAGAAGGTCTCACAC 60 NA Rattus norvegicus 81 RT1-CE5 ENSRNOG00000000723 ENSRNOT00000080987 1 1 1 60 20 4896322 4896340 TCAAGGGACACGAATGGAG 59 4896280 4896299 TGGTTGTAGTAGCCTAGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100363596 ENSRNOG00000032940 ENSRNOT00000072039 2 1 1 60 1 79573302 79573320 GTCCTAGCTGCACCTACAG 60 79573344 79573362 TTGGCGCTATAGGACTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sec14l4 ENSRNOG00000004555 ENSRNOT00000006053,ENSRNOT00000078271 3 2 4 80 14 84287260 84287355 TGACCAAGATCAACTACGGG 60 84287397 84287416 CATTGTGCTCATACTGTGGC 60 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000090593,ENSRNOT00000080108 2 2 6 82 5 158074195 158080492 CATGTTTAACCAGCTGCGG 60 158080537 158080556 GCAACGTGTCTTCATTCTCC 60 NA Rattus norvegicus 81 Slc25a36l1 ENSRNOG00000013802 ENSRNOT00000037120 2 1 1 80 8 104966869 104966889 TTGTGAGAATGATGCTAGCTG 59 104966303 104966830 TTGTTCTTACAACTTCGTGTGG 60 NA Rattus norvegicus 81 LOC100360856 ENSRNOG00000048686 ENSRNOT00000073775 3 1 2 87 9 8350168 8350187 GAAGTGTCAATTCGAGAGGG 58 8350237 8351583 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721,ENSRNOT00000072848,ENSRNOT00000077205,ENSRNOT00000077561 3 6 8 106 20 4363553 4363720 GAATGGAAACTGAACACAGGA 59 4363788 4363806 AGGAGGAGTGAACCATTGG 59 NA Rattus norvegicus 81 AABR07048253.1 ENSRNOG00000005694 ENSRNOT00000007507 1 1 1 80 5 69107159 69107177 TCTAAGAACCACACCACAC 57 69107095 69107115 CTTAAGAGACTGTGACCGG 57 NA Rattus norvegicus 81 Carns1 ENSRNOG00000018603 ENSRNOT00000025092 3 1 1 89 1 219421239 219421257 GGTGACCTTGTGCATTCTG 59 219420904 219421187 CAAAGGAGCATGTTTCCAGG 60 NA Rattus norvegicus 81 Il31ra ENSRNOG00000042080 ENSRNOT00000041452,ENSRNOT00000073469 2 2 2 80 2 44378955 44378975 GAATCTGACTTGCACTTGGAG 59 44376389 44378916 TTCCCATAGGAGTAAGTCATCC 59 NA Rattus norvegicus 81 Olr1308 ENSRNOG00000005997 ENSRNOT00000007862 1 1 1 60 8 43349797 43349815 TATTGTCTCACCCATGCTG 57 43349836 43349857 TCTCTTCACTTCCTTATTCCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1308 ENSRNOG00000005997 ENSRNOT00000007862 3 1 1 60 8 43349038 43349060 GACTCTACTCTTTGTGATGTTCC 59 43349078 43349098 GAGTGAATTTCCAAGCAAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc15 ENSRNOG00000032180 ENSRNOT00000040901 1 1 1 80 8 39822973 39822993 GGTAATGCAACAGATGATGCA 59 39807932 39822936 CTGCTTCATAGTTTGACTAAGAGC 60 NA Rattus norvegicus 81 Olr110 ENSRNOG00000015924 ENSRNOT00000021307 1 1 1 60 1 168655877 168655896 CTTCTTCATCTGCTTCCCTC 58 168655919 168655937 GTTCTTCCCGCAATAGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr110 ENSRNOG00000015924 ENSRNOT00000021307 3 1 1 60 1 168655584 168655602 CTTCACGAACCCATGTACC 58 168655623 168655644 TAGACAGAAAGATATCAGCCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468,ENSRNOT00000087055,ENSRNOT00000077655,ENSRNOT00000090518,ENSRNOT00000083489,ENSRNOT00000080476 1 7 8 98 20 4389611 4389833 TGGACTACATCAATGAGACAC 58 4389533 4389551 CTTGAACCTGTTCCCACAG 58 NA Rattus norvegicus 81 Ccno ENSRNOG00000010454 ENSRNOT00000013871 2 1 1 83 2 44857663 44857681 TGCTACGACTTCCGAAAGG 60 44857727 44858303 GGATTCAGCAGTCACTTGTG 59 NA Rattus norvegicus 81 B3gnt1 ENSRNOG00000046904 ENSRNOT00000074972 2 1 1 71 1 220323977 220324239 TTTCAATCGAATCAGCCAGG 59 220324273 220324291 AAACCTTCGTTCAGCACCT 60 NA DesignNoJunction Rattus norvegicus 81 LOC100911186 ENSRNOG00000047565 ENSRNOT00000071574 3 1 1 80 1 141824802 141825432 TCAATGGCTATGCTCTTGGT 60 141825475 141825493 CAAACTGGGCTTTCTCACC 59 NA Rattus norvegicus 81 Tmem56 ENSRNOG00000025160 ENSRNOT00000032324 2 1 1 80 2 224778019 224778037 GTGCTTGCATACATTGCCA 60 224773457 224777978 GACTTCAAAGAACCATCTCTGG 59 NA Rattus norvegicus 81 Atp1b3 ENSRNOG00000011501 ENSRNOT00000015476 3 1 1 80 8 104199635 104199655 TACATACAGCATGTCTGACCC 60 104196615 104199596 TCCACAGAATATGGCTTTAGGA 59 NA Rattus norvegicus 81 Vma21 ENSRNOG00000048606 ENSRNOT00000071269 3 1 1 85 16 70146606 70147280 TATTTGAAGGTGCCCTTGGA 59 70146540 70146558 CAGAACCACATGAACAGCA 58 NA Rattus norvegicus 81 Cyp1a1 ENSRNOG00000019500 ENSRNOT00000026473 1 1 1 80 8 62475999 62476017 CGAGAATGCCAATGTCCAG 59 62476061 62476163 ATTGTGTCAAACCCAGCTC 58 NA Rattus norvegicus 81 B4galt5 ENSRNOG00000008283 ENSRNOT00000064849,ENSRNOT00000079414 1 2 2 135 3 164055530 164055548 TACCTCTTCATGGTGCAGG 59 164050456 164055435 GAGGATAATCTGAGTCATTCAGG 58 NA Rattus norvegicus 81 Kdf1 ENSRNOG00000055933 ENSRNOT00000081318 3 1 1 114 5 151750963 151751556 TCAGCCAGGATGAACTGAC 59 151752099 151752117 AAGGATGAGTCTTGGCTGG 59 NA Rattus norvegicus 81 RGD1309821 ENSRNOG00000023208 ENSRNOT00000033235 1 1 1 92 5 57878700 57878858 AAACAAGGACATCAGCACG 59 57878626 57878644 TTCTCCTGAAGGTTCTGGG 59 NA InUTR Rattus norvegicus 81 Rpl38 ENSRNOG00000029377 ENSRNOT00000046518 2 1 1 60 8 63119489 63119507 TAAAGTTCAAGGTCCGCTG 58 63119528 63119549 TTCTCCTTGTCTGTGATAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cd24 ENSRNOG00000000321 ENSRNOT00000000352 3 1 1 90 20 48335674 48339153 ACCCACGCAGATTTATTGC 59 48339204 48339225 GGTAGCATTAGTTGGATTTGGG 60 NA Rattus norvegicus 81 Golga7 ENSRNOG00000017956 ENSRNOT00000030960 3 1 1 80 16 73570418 73570437 TATCTTGAAGGCTGTCTGGC 60 73570476 73574815 CTTCAAGACCTTCTCGTAATGAG 59 NA Rattus norvegicus 81 Cdc40 ENSRNOG00000000581 ENSRNOT00000064081,ENSRNOT00000087740,ENSRNOT00000077926 1 3 3 80 20 48570225 48572171 TCTCCAAATGGGAAATGGCT 60 48572211 48572232 CAATCTGAATCTGTTCTGTGCT 59 NA Rattus norvegicus 81 LOC685619 ENSRNOG00000029470 ENSRNOT00000049468 2 1 1 60 3 162165160 162165180 CCTTTCTGAAGAGTTACGGTG 59 162165120 162165139 TCTAACTTCTTCAGCACTGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1311251 ENSRNOG00000007266 ENSRNOT00000009562 1 1 1 80 8 57988030 57988049 CCCAAGATCATTCAAAGCAG 57 57988091 57992103 GGAACACGGAAACATTAAGG 57 NA Rattus norvegicus 81 Aim1 ENSRNOG00000025998 ENSRNOT00000036753 3 1 1 80 20 48937541 48937559 CAGTCAATCTCCGATCCCT 59 48935414 48937499 ACTCATAGGTGACCCATATGC 60 NA Rattus norvegicus 81 Sdhb ENSRNOG00000007967 ENSRNOT00000010593 3 1 1 80 5 159490342 159496811 GGATCTGAATAAGTGTGGACC 58 159496851 159496871 CGGAAGGTCAAAGTAGAATCG 59 NA Rattus norvegicus 81 RGD1559903 ENSRNOG00000000607 ENSRNOT00000000745 2 1 1 60 20 17751015 17751035 CAACTCCTGTACAAACTCGAC 59 17751056 17751075 AATATGTCACTGGTCTTCCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspyl1 ENSRNOG00000000549 ENSRNOT00000000660 1 1 1 60 20 41084073 41084097 GTTAAGGTACATAACCAATCTGGAG 59 41084115 41084133 TTTGCAGCCAGTCTTAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1335 ENSRNOG00000059229 ENSRNOT00000081506 2 1 1 60 8 43853913 43853931 ACACCACTACTCAACCCTG 59 43853871 43853890 ATAGTGCCTTCTTCACCTCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1193 ENSRNOG00000028864 ENSRNOT00000050206 3 1 1 60 8 21305385 21305405 ATTCTGGCTGTTAGCATTGAC 59 21305421 21305445 GATTAGATAGGAAGAAGTACATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912186 ENSRNOG00000050017 ENSRNOT00000073897 2 1 1 60 8 42348568 42348589 TTATGTACCTAAAGCCCTCCTC 59 42348609 42348628 AAGACAGAAGACACTTTCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defa5 ENSRNOG00000030093 ENSRNOT00000018501 1 1 1 112 16 75338279 75338814 AGATGCAGATGTGAAGGCA 59 75338185 75338203 AGCACAGTCTGTAGATGCG 60 NA Rattus norvegicus 81 AABR07044583.1 ENSRNOG00000060674 ENSRNOT00000091856 1 1 1 80 20 11556217 11556235 TCTGTCTGCTCTGATGCTC 59 11556155 11556173 ACAGCTACAAGGCTCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1683 ENSRNOG00000047702 ENSRNOT00000047478 3 1 1 60 20 556124 556145 GTAGTAACTCCTACACTGAACC 58 556085 556107 CTCCCTTTACATCCTTATTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc2a10 ENSRNOG00000025384 ENSRNOT00000030203 3 1 1 97 3 162192034 162192057 GCTTAGCTTTCATCTACTTACTCG 60 162192113 162192543 AAAGCTCAGAGGGAACCTC 59 NA Rattus norvegicus 81 Tpx2 ENSRNOG00000008165 ENSRNOT00000010851,ENSRNOT00000088481 1 2 2 80 3 148351654 148351674 TCAAATGATTGTCCTTCCCTG 58 148351713 148353081 TCTAACAGATCTTCTCTGAGGC 59 NA Rattus norvegicus 81 Defa8 ENSRNOG00000046075 ENSRNOT00000045057 3 1 1 69 16 75428798 75428817 ATGTCTGTCTCCTTTGAAGG 57 75428846 75429449 GCTTTAATGGCCATCCTATCTC 59 NA DesignNoJunction Rattus norvegicus 81 Ambra1 ENSRNOG00000017422 ENSRNOT00000084809 2 1 3 87 3 80677136 80677155 CAAATGCCTAACTCCGCAG 59 80677206 80677224 GTCTCCTGGTTAAAGGCCA 59 NA InUTR Rattus norvegicus 81 AC111257.1 ENSRNOG00000046973 ENSRNOT00000080832,ENSRNOT00000057761 1 2 2 80 16 80911380 80911402 CAGAACAACCAGTATATCCTGAC 59 80911437 80912866 CACGATATCCTTTATGAAGTGGTG 60 NA Rattus norvegicus 81 C1qb ENSRNOG00000012749 ENSRNOT00000017060 2 1 1 107 5 155248632 155251863 GAGGATTCCATACACAGGAGG 60 155248545 155248563 AGGAGACATGGAGCAAACC 60 NA InUTR Rattus norvegicus 81 Ptprd ENSRNOG00000005711 ENSRNOT00000075474 3 1 1 80 5 93024636 93025507 CGAACCGATGAAGATGTTCC 59 93024575 93024594 CGAGACTTTAACAGCTGTGG 59 NA Rattus norvegicus 81 Rag1 ENSRNOG00000004630 ENSRNOT00000006115 3 1 1 81 3 91217431 91217450 GACATTCTAACACTCTGGCC 58 91212807 91212825 CTCAGGGTAGATGGCAAGG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pex14 ENSRNOG00000013498 ENSRNOT00000018167 3 1 1 84 5 165788515 165788533 CTGTCCAGGAGCTACTGAG 59 165785818 165788467 GTTGATGTGGTAGCCTTGG 59 NA Rattus norvegicus 81 Aadacl3 ENSRNOG00000026613 ENSRNOT00000033150 2 1 1 85 5 162330241 162330837 TCAGTTGGATACAGAAAGTCTC 58 162330883 162330901 GATCTCAGAAAGTGGGTGG 58 NA Rattus norvegicus 81 Dlgap4 ENSRNOG00000020225 ENSRNOT00000037177 3 1 1 80 3 152844914 152844932 TTCGATGAGCTCTACCACC 59 152844974 152845763 TGGTTTCTTCTCTTCCTTCCT 59 NA Rattus norvegicus 81 Tdrp ENSRNOG00000027245 ENSRNOT00000036383,ENSRNOT00000082049 1 2 2 91 16 80751529 80751549 TGGAAAGAAGCAACATCTCTG 59 80751600 80753103 CGTACGTTAGTTCCTTTGGAC 59 NA Rattus norvegicus 81 AABR07026233.1 ENSRNOG00000038490 ENSRNOT00000058668 1 1 1 89 16 68672122 68673433 AACGATACAATCTCCACAGGA 59 68672053 68672071 TGTTCAGAGGAGATGTGCC 59 NA Rattus norvegicus 81 Rcc1 ENSRNOG00000050106 ENSRNOT00000085482,ENSRNOT00000075127 3 2 2 81 5 150514397 150514415 CTACAGGATGTTGTGCAGG 58 150514194 150514352 AGCCAAAGGAGTAGACCTG 59 NA Rattus norvegicus 81 Casp9 ENSRNOG00000012944 ENSRNOT00000017972,ENSRNOT00000088523,ENSRNOT00000080721,ENSRNOT00000085378 3 4 4 113 5 160355994 160358472 ATCGAGGATATTCAGCGGG 59 160358548 160358567 TAAGCAGGAGATGAAGCGAG 60 NA Rattus norvegicus 81 Capzb ENSRNOG00000007330 ENSRNOT00000083577,ENSRNOT00000010308 2 2 2 81 5 157731174 157731192 GATGCTATGGCTGCAAACC 60 157731236 157737867 GTCCTTCTCCATCTGTCTGG 60 NA Rattus norvegicus 81 Fhad1 ENSRNOG00000028064 ENSRNOT00000018953 3 1 1 80 5 160467364 160467385 CAAGAGTTCACCATAGTACCCT 59 160466921 160467329 CATTAGTAAGTCATCTATCAGGTGG 59 NA Rattus norvegicus 81 Adprhl1 ENSRNOG00000019504 ENSRNOT00000057740,ENSRNOT00000073240,ENSRNOT00000026546 3 3 4 81 16 81679497 81684923 ACTGCCTGATTACTATAGCCC 59 81684966 81684984 TAGCTTCATCCTCACCAGC 59 NA Rattus norvegicus 81 Cbfa2t2 ENSRNOG00000016352 ENSRNOT00000021907 3 1 1 80 3 150010507 150010527 AGTTTGGCAATGACATCTCAC 59 150010568 150014225 TTGTCACTGTTGAGTTCACC 58 NA Rattus norvegicus 81 Agpat6 ENSRNOG00000018077 ENSRNOT00000024392 2 1 1 80 16 73645038 73647872 TTGCTATCAAGTATGACCCTC 57 73647914 73647932 TTCTGAGCAAGTACGTCAC 58 NA Rattus norvegicus 81 RGD1559708 ENSRNOG00000012174 ENSRNOT00000016204 1 1 1 60 16 22410847 22410867 GGGAGACAGACACCTATAGAG 59 22410807 22410825 GCCTCAGCTTTCTTGTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hoxd10 ENSRNOG00000001581 ENSRNOT00000002148 3 1 1 96 3 61614962 61616343 GAGAAGGAAAGCAAAGAGGA 58 61616401 61616420 GTTTAGTGTAAGGGCACCTC 58 NA Rattus norvegicus 81 Wfdc2 ENSRNOG00000014739 ENSRNOT00000019804,ENSRNOT00000039664 3 2 2 117 3 161021667 161024020 CCCAAATTCTGAGCTTCAGC 60 161024100 161024118 CGAAATGCAAAGGCCAGAG 60 NA InUTR Rattus norvegicus 81 Cldn24 ENSRNOG00000031521 ENSRNOT00000050279 2 1 1 60 16 47537385 47537405 CATTACTACCACGTATCTGCC 58 47537345 47537363 TTCCATCTCGTTCAGCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Defb13 ENSRNOG00000038157 ENSRNOT00000058071 2 1 1 80 16 75027272 75028936 CATTCAACTTCACCCAGCC 59 75027210 75027228 CAGGCAGTTTCACATCGTC 59 NA DesignNoJunction Rattus norvegicus 81 LOC103695172 ENSRNOG00000032195 ENSRNOT00000040114 2 1 1 90 3 59837458 59839838 TTGTAACTGATTGCCAGCG 59 59839891 59839910 TCCTCTGCTTCTTCCAAGTC 60 NA Rattus norvegicus 81 Mcph1 ENSRNOG00000028586 ENSRNOT00000043384 1 1 1 80 16 76018400 76045451 TTACCAATGGGTTCTGTTGTC 59 76018340 76018359 GCAGGGAAGGTTTCAAAGAG 59 NA Rattus norvegicus 81 RGD1308750 ENSRNOG00000048356 ENSRNOT00000073254 3 1 1 60 16 70070155 70070174 GCTTTGGTGTGAAGAACCTC 60 70070197 70070215 GAAAGAACGATGGCTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stmn3 ENSRNOG00000013657 ENSRNOT00000079262,ENSRNOT00000018697 1 2 2 94 3 176810828 176810846 AGGAGCTATCTGTGCTGTC 59 176810502 176810771 CTGCTTCACTTCCATATCCC 58 NA Rattus norvegicus 81 LOC689713 ENSRNOG00000033703 ENSRNOT00000043188 1 1 1 80 16 84471828 84474211 CCACCCAGACAACTATGGA 59 84474253 84474273 TGAGATTCAGTTGCAGTAGAC 58 NA Rattus norvegicus 81 Dpm1 ENSRNOG00000010993 ENSRNOT00000016150 3 1 1 80 3 164969144 164969163 CCAAAGGCTACGTCTTTCAG 59 164968217 164969102 ATGAAATCGGAACCTCACCA 60 NA Rattus norvegicus 81 Nup35 ENSRNOG00000009290 ENSRNOT00000012628 3 1 1 80 3 67894573 67894593 TCCTAGGGTTTCTACCATGAG 58 67894634 67895894 TGTCGGTCAGAAATAACCTG 58 NA Rattus norvegicus 81 Mtch2 ENSRNOG00000058658 ENSRNOT00000079709 3 1 1 80 3 79680594 79680612 AGGAGTCCTTGGAACTGTG 59 79683817 79684009 GCAGATCCTAAGTCCTCAGG 59 NA Rattus norvegicus 81 Ptpn1 ENSRNOG00000010574 ENSRNOT00000014309 1 1 1 80 3 164710180 164710199 GTGAGGATGAGGACATCCTG 60 164710240 164711310 CTTGACTCATACTGCTCATGC 59 NA Rattus norvegicus 81 Adam24 ENSRNOG00000038671 ENSRNOT00000042587 3 1 1 60 16 54627191 54627212 GATGGGATACTTTGTTCTTGTG 58 54627152 54627171 AACTCTCCATTGTAGCAGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Madd ENSRNOG00000012568 ENSRNOT00000017360,ENSRNOT00000079394 2 2 2 80 3 79977754 79977772 CGGCTAGTAGTCCAGTTCG 60 79976637 79977713 CTTTGTCCCTTCCTAGTAGTCC 60 NA Rattus norvegicus 81 Smim18 ENSRNOG00000049689 ENSRNOT00000074543 1 1 1 60 16 62153875 62153894 TGATAACTGGAACACTGCCT 59 62153912 62153935 GGACACCACAGTAAATATGAACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vav3 ENSRNOG00000020485 ENSRNOT00000027813 2 1 2 80 2 212564742 212582936 CAACAGCTTGCTAAGTCCC 59 212582980 212582998 GAGAGCTCCCGCATATCTC 60 NA Rattus norvegicus 81 Mcpt2 ENSRNOG00000020625 ENSRNOT00000027988,ENSRNOT00000091757 3 2 3 83 15 35032125 35032651 TGGAGCTGAGGAGATTATCG 59 35032696 35032715 TTCTCAGTGACGATGTCCAG 60 NA Rattus norvegicus 81 Fam198b ENSRNOG00000010183 ENSRNOT00000013524,ENSRNOT00000088686 3 2 2 81 2 178681570 178699066 ATTAGAGTTCATCCAAGATGGC 58 178699106 178699126 ATGGCTAACATTGCTTGAAGG 59 NA Rattus norvegicus 81 Mx2 ENSRNOG00000001963 ENSRNOT00000083067,ENSRNOT00000087603,ENSRNOT00000002695 1 3 3 80 11 38044628 38044648 CCTATGATGACATCGAAGTGG 58 38044688 38045268 CAGCAATATGGTTCTGACCTG 59 NA Rattus norvegicus 81 Nck1 ENSRNOG00000014917 ENSRNOT00000020330 3 1 2 81 8 108791314 108801357 AGGACACCTTAGGCATTGG 59 108791251 108791272 TCAACAAAGCTATCATCAGCAG 59 NA Rattus norvegicus 81 Vcam1 ENSRNOG00000014333 ENSRNOT00000078806,ENSRNOT00000077972,ENSRNOT00000019377 2 3 3 90 2 219086269 219094350 AACTACAAGTCTACACCTCCC 59 219086199 219086217 CATGTCATCGTCACAGCAG 59 NA Rattus norvegicus 81 Syngap1 ENSRNOG00000000483 ENSRNOT00000040859,ENSRNOT00000000572 2 2 2 80 20 5548776 5548997 GCTTTGAGGTAACAACATCG 58 5549038 5549058 GATTCTCAATCCATTTGTCCC 57 NA Rattus norvegicus 81 Syngap1 ENSRNOG00000000483 ENSRNOT00000040859,ENSRNOT00000000572 3 2 2 80 20 5548720 5548742 GGATGAAGACTCCATTATCAAGC 59 5548781 5549002 CCAGACGATGTTGTTACCTC 58 NA Rattus norvegicus 81 Exosc8 ENSRNOG00000051623 ENSRNOT00000086214 2 1 2 121 2 143928167 143929006 CAGGGAAGACTACGATGGG 59 143926778 143926798 AATTGACTTCCGCTAAAGCAG 59 NA Rattus norvegicus 81 Rnpc3 ENSRNOG00000017310 ENSRNOT00000088533,ENSRNOT00000087714,ENSRNOT00000023366 3 3 3 83 2 216500164 216500182 TTACCAGACGAGGATGAGG 58 216494933 216500118 TTTGTTCATTCTCTGTCGGT 58 NA Rattus norvegicus 81 Cbln3 ENSRNOG00000020503 ENSRNOT00000090228,ENSRNOT00000027794 2 2 2 100 15 34550060 34550389 ATCTACTTCGACCAGGTGC 59 34549978 34549997 TGGAATCGGAAGCTGTAGAC 60 NA Rattus norvegicus 81 Ash1l ENSRNOG00000020386 ENSRNOT00000027629 3 1 2 84 2 188330318 188337248 CCCATTCATGTTGGAAAGTATCTC 60 188337290 188337309 GATTGTGTTTCCACTGCCAG 60 NA Rattus norvegicus 81 Clu ENSRNOG00000016460 ENSRNOT00000078861,ENSRNOT00000022095 3 2 3 86 15 42656261 42657862 AGCTCCAAGAACTGTCCAC 60 42657911 42657930 GGGTCTTTATGTGCTTCACC 59 NA Rattus norvegicus 81 Gck ENSRNOG00000061527 ENSRNOT00000080147 2 1 3 81 14 86159498 86159516 CTGAAGAAGGTGATGAGCC 58 86158980 86159453 AAGTCTCCGACTTCTCCTC 58 NA Rattus norvegicus 81 Bdp1 ENSRNOG00000017864 ENSRNOT00000076991,ENSRNOT00000024023 1 2 2 80 2 30314082 30319939 TAGACAAAGCCTTCCAGGA 58 30314020 30314041 CTTCTTCAGCAAGAACTTTCTG 58 NA Rattus norvegicus 81 Far1 ENSRNOG00000013176 ENSRNOT00000018532 2 1 3 80 1 178409421 178409442 ATCCTTGTGATACTTATCTGGC 58 178409480 178430973 CTTAACTCCCACAAAGTACCAG 59 NA Rattus norvegicus 81 B4galt7 ENSRNOG00000021886 ENSRNOT00000036223,ENSRNOT00000083492 3 2 2 91 17 9551160 9551178 GTACCAGACATTTCGCCAC 59 9550697 9551105 CCACCTTGAACTGTTCCTG 58 NA Rattus norvegicus 81 Rn60_X_0551.1 ENSRNOG00000051362 ENSRNOT00000076572 3 1 1 60 X 54821391 54821412 GTTTGACAGTGGAGGTTAACTC 59 54822107 54822127 ATACACCAAGCATCATACACC 58 NA DesignNoJunction Rattus norvegicus 81 Dus4l ENSRNOG00000008155 ENSRNOT00000084533,ENSRNOT00000068419 2 2 2 80 6 50935276 50937506 CAAACCAAGGTGATTGCCC 60 50935214 50935233 AGACTATCAGAGCAGCATCG 60 NA Rattus norvegicus 81 Emr4 ENSRNOG00000050325 ENSRNOT00000081513,ENSRNOT00000073659,ENSRNOT00000080314 3 3 3 80 9 8158118 8160743 TGGAACATACAACCACTGC 58 8160787 8160805 AAGATAATGGCTGCCACTG 58 NA Rattus norvegicus 81 Tfg ENSRNOG00000001633 ENSRNOT00000088152 2 1 2 82 11 46202501 46205910 AGTATTCAGCTAGTTACAGCCA 59 46205953 46205971 CTGGGAAGTTGGTTGTTGG 59 NA Rattus norvegicus 81 Pld5 ENSRNOG00000003997 ENSRNOT00000078195,ENSRNOT00000005332 2 2 2 80 13 94161156 94209028 AAATGTCGAATCGCTCTTGTG 60 94161096 94161116 GAAGAGCGGTAAGTGAAATGG 59 NA Rattus norvegicus 81 Sirt2 ENSRNOG00000020102 ENSRNOT00000064153 3 1 2 169 1 86969413 86969432 TAACAAGGAGAAGACAGGCC 60 86971188 86971289 CTTCCAGCTCCTTCCATCC 60 NA Rattus norvegicus 81 Satb2 ENSRNOG00000010188 ENSRNOT00000087684,ENSRNOT00000049259 2 2 2 83 9 63564835 63564853 AATGCCTTAAAGGAGCTGC 59 63558402 63564791 GGATGAAATCATACTCTGGGAG 58 NA Rattus norvegicus 81 Ssx1 ENSRNOG00000027850 ENSRNOT00000030146 2 1 2 80 X 14905436 14908461 GTTCTAATTTGGCAGGAGCT 58 14905375 14905396 ATATCACTCGAGTCTTCCTCTC 59 NA Rattus norvegicus 81 Gckr ENSRNOG00000048874 ENSRNOT00000073228,ENSRNOT00000076268 1 2 2 80 6 26356247 26357947 CATGTTGCAGAGGTTCTCTG 59 26356186 26356204 AGTGGTTGAGGAAAGTGGA 59 NA Rattus norvegicus 81 AABR07003241.1 ENSRNOG00000049860 ENSRNOT00000056467 3 1 1 60 1 99864155 99864175 TCATCTTCAGTTTCCTCAGCA 60 99864679 99864700 CTTCAGTCTGAGGAGAATTAGC 58 NA DesignNoJunction Rattus norvegicus 81 Hpn ENSRNOG00000021097 ENSRNOT00000079631 1 1 2 107 1 89542472 89543869 TGCGTCTTACATATGCGTC 58 89539124 89539142 TCTGTCTTGTCCAACACCA 59 NA Rattus norvegicus 81 Zp2 ENSRNOG00000057989 ENSRNOT00000088536 3 1 2 108 1 189911473 189911617 GAGAGTCTACTGGTTGCGT 59 189910450 189911402 ATCACAAATGAGAGTGCCTG 58 NA Rattus norvegicus 81 Tpmt ENSRNOG00000016468 ENSRNOT00000081708 1 1 2 80 17 18037359 18037378 TGTCATACACAGAAGAACCG 58 18037421 18038285 CCCGGAAGAACTCATAGTC 57 NA Rattus norvegicus 81 Tpmt ENSRNOG00000016468 ENSRNOT00000081708 2 1 2 80 17 18037360 18037379 GTCATACACAGAAGAACCGC 59 18037421 18038286 TCCCGGAAGAACTCATAGTC 59 NA Rattus norvegicus 81 Zfp583 ENSRNOG00000034184 ENSRNOT00000039438 2 1 2 95 1 71251643 71251661 GAATGGCAACAGCTGAGTG 60 71251717 71253353 GTAAATAGGAATTCCCAGCGAC 59 NA Rattus norvegicus 81 Serpinb8 ENSRNOG00000002396 ENSRNOT00000079134,ENSRNOT00000003274 2 2 2 80 13 27909757 27910722 TGATCTCACTGTGGTGGAG 59 27910763 27910784 TTACTTTCTGTCAGGGTTTCTG 58 NA Rattus norvegicus 81 Serpinb8 ENSRNOG00000002396 ENSRNOT00000079134,ENSRNOT00000003274 3 2 2 81 13 27896373 27906539 TCCTTTCGACCTTCAAGGA 58 27906581 27906602 CCTTCAGTGTCTTTAACAAAGG 58 NA Rattus norvegicus 81 Lsamp ENSRNOG00000031852 ENSRNOT00000047907 3 1 2 81 11 58809683 58827001 CCACCCTATTCAAGAAATTGG 57 58803423 58803441 GATGGATCCGTTGATTCCT 57 NA Rattus norvegicus 81 Atxn7l4 ENSRNOG00000010415 ENSRNOT00000013842 2 1 4 81 6 52667455 52667476 ATAGAAGATGGGATCGATTTCG 58 52667517 52668874 CTTCTGTGCTTCCACATCTG 59 NA Rattus norvegicus 81 Vasp ENSRNOG00000016367 ENSRNOT00000022214 1 1 2 86 1 80172763 80172888 GAAGAACAGCTCTTCCAGGA 60 80172696 80172714 GAGTCATCACTGGAGCTGG 60 NA Rattus norvegicus 81 Vasp ENSRNOG00000016367 ENSRNOT00000022214 2 1 2 87 1 80172764 80172889 AGAAGAACAGCTCTTCCAGG 60 80172696 80172714 GAGTCATCACTGGAGCTGG 60 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000037255 1 1 10 80 2 231316675 231316693 GTATGGAAGCCTGGATGTG 58 231314509 231316633 GGAGTATAGCCATTCTTCCCT 59 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000089534,ENSRNOT00000080470 2 2 10 81 2 231250894 231255694 AACAGCAACAAGATGATGAGAC 59 231250834 231250857 GCTAAGACAGGAACTTCATTAACC 60 NA Rattus norvegicus 81 Zfp772 ENSRNOG00000015598 ENSRNOT00000079497 3 1 2 100 1 69739357 69739999 CTCGGACTTGTACCTTCCG 60 69738150 69739294 ATCCAACAACCTGGAGTCAG 60 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000087781,ENSRNOT00000078903,ENSRNOT00000027487 1 5 7 80 1 215610627 215610647 AGAAGCAGAACTACCTGTCAG 60 215610689 215610847 GTTTGCAGAGTTCCTGCAC 60 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000078903,ENSRNOT00000027487 1 4 7 80 1 215610467 215610575 CACCTGAAGAGTGTGATGC 59 215610619 215610637 GTTCTGCTTCTCGGATTCG 59 NA Rattus norvegicus 81 Gspt1 ENSRNOG00000046271 ENSRNOT00000091610,ENSRNOT00000074487,ENSRNOT00000003213 3 3 3 80 10 4441843 4441861 CCAGGATTCATCCTCTGTG 57 4441901 4443395 GTGCTCTATAATCACTATCTGGG 58 NA Rattus norvegicus 81 Ptk2b ENSRNOG00000027839 ENSRNOT00000030007,ENSRNOT00000030036 1 2 2 80 15 42881236 42881255 CTACAGCAACAGCTTCAACC 60 42862945 42881196 GTGATGATCTCCTGGATCTCTG 60 NA Rattus norvegicus 81 LOC681766 ENSRNOG00000040136 ENSRNOT00000086010 2 1 2 81 6 11058410 11058506 ATACTCCAATACCCGGCAG 59 11058347 11058365 GGACTATATTGCGGGAGGT 59 NA Rattus norvegicus 81 Clint1 ENSRNOG00000005406 ENSRNOT00000079437 3 1 2 81 10 31005129 31006156 ACAACAGAATATGCAACAGCC 60 31006196 31006217 AAGCATGTTTGATGGAGAACTG 60 NA Rattus norvegicus 81 Epb41l3 ENSRNOG00000016724 ENSRNOT00000022849 1 1 4 129 9 117636826 117636844 GTACCATACGCCCTCACTC 60 117636935 117647719 CACTGTCAGTCTCTTCCTCTG 60 NA Rattus norvegicus 81 RGD1310352 ENSRNOG00000006148 ENSRNOT00000008119,ENSRNOT00000087555 3 2 2 91 10 37757309 37764327 CCTGTGCTATGGTATACCAGAG 60 37764378 37764397 GGGAAACAGAAGGTTTGGTG 59 NA Rattus norvegicus 81 Fam3d ENSRNOG00000007320 ENSRNOT00000009650,ENSRNOT00000085822 1 2 2 83 15 18349560 18351255 ACATGTACTCTGGAGAACCC 59 18351301 18351319 CATAGGAGGCTACCAGCAC 60 NA Rattus norvegicus 81 Cryaa ENSRNOG00000047175 ENSRNOT00000075545 2 1 2 86 20 10438617 10438636 TTCCTGTCTTCCACCATCAG 60 10438685 10438963 ATGGGTCATGAGCTCAGAG 59 NA Rattus norvegicus 81 Rab7a ENSRNOG00000012247 ENSRNOT00000077624 3 1 2 89 4 119915818 119915836 CTTACTTCGAGACCAGTGC 58 119913855 119915766 TTTGTGCATGCTGTTTAAGG 58 NA Rattus norvegicus 81 RGD1309870 ENSRNOG00000037621 ENSRNOT00000038733 2 1 2 80 14 91558357 91575082 AACTTGGAGGTTGGACGAG 60 91575126 91575144 ACAAGCGACTTAATGTGCC 59 NA Rattus norvegicus 81 Asphd2 ENSRNOG00000061004 ENSRNOT00000079190,ENSRNOT00000086782 3 2 2 87 12 50273628 50273646 ATCTCAGTGCTGAGTCCTG 59 50273696 50277578 GAGTCTTCAGACCTAGGTGG 59 NA Rattus norvegicus 81 March2 ENSRNOG00000007769 ENSRNOT00000090849 3 1 3 97 7 18577211 18577231 GACCACCTCAGTATGTAGCTC 60 18564675 18577152 CTGGGTCCTTTAGCCACTC 60 NA InUTR Rattus norvegicus 81 Rundc3a ENSRNOG00000020970 ENSRNOT00000028487 3 1 2 80 10 90346185 90346203 TCGATGATTCATCCGAGGA 58 90346247 90346614 GGGCACAAGCTTTAAATCG 58 NA Rattus norvegicus 81 Pdzd9 ENSRNOG00000016292 ENSRNOT00000044384 1 1 2 80 1 190596347 190596366 CTACCTCCAGATTAGCCACC 59 190591274 190596306 CTAATCAGAACATCACCTGGC 59 NA Rattus norvegicus 81 Recql ENSRNOG00000012602 ENSRNOT00000065576 1 1 2 80 4 176597712 176597730 TGCTTAGAGGACTCTGCTG 59 176596512 176597672 CCATGGGAAATCTTCTTTACTCC 59 NA Rattus norvegicus 81 Fmo4 ENSRNOG00000003400 ENSRNOT00000004577 3 1 2 81 13 80697729 80699830 TGGAAGTTTGCTACTACTGTG 58 80697668 80697686 TCTCTGTGACAACTTCCCA 58 NA Rattus norvegicus 81 Klhdc1 ENSRNOG00000004425 ENSRNOT00000082500,ENSRNOT00000064668 1 2 2 80 6 91557949 91560385 ATATTCCACTAAGTGATGGCTG 58 91560424 91560444 GCCTGGTGTAAGGTAAATGTC 59 NA Rattus norvegicus 81 Mapk9 ENSRNOG00000002823 ENSRNOT00000003987,ENSRNOT00000083688 3 2 3 80 10 35361980 35363419 AGGAGAATGTTGATATCTGGTC 58 35363457 35363478 GGTCAGTACCTTGGAATATCAC 58 NA Rattus norvegicus 81 Ppp3cc ENSRNOG00000009745 ENSRNOT00000082505,ENSRNOT00000012993,ENSRNOT00000084166 2 3 4 80 15 51925733 51925752 GTAGTGAGAAGACCCTGGAG 59 51920811 51925691 CACAAACTGCAGGGTAACTG 60 NA Rattus norvegicus 81 Ndufa2 ENSRNOG00000017571 ENSRNOT00000023811 1 1 1 62 18 29587420 29587438 GAATGTTCAGAGGTGCAGC 59 29585977 29585995 CACATTCTTCTCTTGGCCA 58 NA DesignNoJunction Rattus norvegicus 81 Wdr95 ENSRNOG00000000904 ENSRNOT00000061252 1 1 2 80 12 6267818 6267836 TGATGTACGTACACGTAGC 57 6267880 6274291 CCAGATCCCAGATCTTGAC 57 NA Rattus norvegicus 81 Ranbp3 ENSRNOG00000049785 ENSRNOT00000071228 2 1 3 80 9 10359438 10363405 AACTGTCAGGGAGATCTGC 59 10359300 10359319 GAGGGCAATAGTTTCCATCC 58 NA Rattus norvegicus 81 Lrrc38 ENSRNOG00000015264 ENSRNOT00000020483 2 1 1 113 5 162032733 162032751 GAGAACGCATCCAAACTGC 60 162052479 162052498 CTTACACTCGCTGAAACTGG 59 NA DesignNoJunction Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000079722 2 1 6 80 1 282643686 282643704 ACATCTATACACCAGCCCA 58 282672491 282681786 CTATAACCAGTGCACCACC 58 NA Rattus norvegicus 81 Ubfd1 ENSRNOG00000018243 ENSRNOT00000025072,ENSRNOT00000077457 2 2 2 80 1 192026237 192027054 ATTCACTCCATTACAGGTCTC 57 192027095 192027114 TCTCAACGTCTTGTCTTCAG 58 NA Rattus norvegicus 81 Nif3l1 ENSRNOG00000013446 ENSRNOT00000058667 2 1 2 90 9 65340325 65340345 CTGGCAACAATGATAGAACGA 59 65340397 65340909 TCCTATGCCCTAAGGTCCT 59 NA Rattus norvegicus 81 Gab1 ENSRNOG00000017879 ENSRNOT00000083219,ENSRNOT00000024390 3 2 2 80 19 30880743 30883016 TGAACAAGTTACGGAAAGATGC 60 30883056 30883075 AGGAACTGGATCTATCGCTC 59 NA Rattus norvegicus 81 Nedd9 ENSRNOG00000014548 ENSRNOT00000067374 2 1 3 93 17 23116766 23136877 GAAGTATAAGAATCTTATGGCGAGG 59 23136928 23136946 GACGGTCAAGATGTCTCCC 60 NA Rattus norvegicus 81 Ptpn13 ENSRNOG00000002061 ENSRNOT00000061162,ENSRNOT00000087081 1 2 2 80 14 7738622 7738641 CTAGGAGTGTTTATCAGCGC 59 7738201 7738579 TATCAAACGGTCTCCAGGC 60 NA Rattus norvegicus 81 Dync1li2 ENSRNOG00000025791 ENSRNOT00000034472 2 1 4 81 19 755959 757536 CTGATGAAACAACAGGAATCCC 60 757578 757596 GTACACTAGCTGGTCCACC 60 NA Rattus norvegicus 81 LOC690096 ENSRNOG00000009240 ENSRNOT00000012255 1 1 1 88 14 107349705 107349723 CGAAAGAACAAGTACCGCC 59 107349875 107349893 CTTTGAAGGATGGCACTGG 59 NA DesignNoJunction Rattus norvegicus 81 LOC687441 ENSRNOG00000016997 ENSRNOT00000023028 2 1 1 86 20 6157041 6157248 TTCTGGAAGAAGAGCCACAG 60 6156974 6156992 CCAGGGATTTCTTCCTGGG 60 NA Rattus norvegicus 81 Znrd1 ENSRNOG00000000779 ENSRNOT00000087098,ENSRNOT00000077405,ENSRNOT00000085900 1 3 3 60 20 2092328 2092346 ATGCCTTCTTGGTCTCCTC 59 2092367 2092388 CTGGGTCGATGATCTTATTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Znrd1 ENSRNOG00000000779 ENSRNOT00000087098,ENSRNOT00000077405 1 2 3 80 20 2089439 2092245 GTATCAACTGCAAGTTTCAGG 58 2092287 2092305 CAAGAGGAGGAAAGGACTG 57 NA Rattus norvegicus 81 Eif3e ENSRNOG00000027690 ENSRNOT00000038340 3 1 1 80 13 100149489 100149507 ACAAAGATGTGCGGAAACG 60 100149545 100150238 GGTCTTTATATGTGTAAGACTCCTG 59 NA Rattus norvegicus 81 Defb28 ENSRNOG00000036900 ENSRNOT00000055412 3 1 1 81 3 147992780 147992798 CTCGGGACACATTAAGCTC 58 147992843 147994466 TCTGAACCATCCTTCTGGG 59 NA Rattus norvegicus 81 Olr758 ENSRNOG00000004938 ENSRNOT00000006545 1 1 1 60 3 102659245 102659266 GTACGACAACATTCTTCAACTG 58 102659286 102659305 TGATGTGAGCTGATAAGGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Maats1 ENSRNOG00000002976 ENSRNOT00000040773 1 1 1 80 11 64984030 64984463 TATCAACAGCCAAGACAGGA 59 64984506 64984524 CCACAGTGGACTTGGTAGG 60 NA Rattus norvegicus 81 Maats1 ENSRNOG00000002976 ENSRNOT00000040773 3 1 1 80 11 65013759 65017944 GTCAAAGAGAAAGTGAGGAACG 60 65017985 65018003 CATGGATTCCGTGTTGCTG 60 NA Rattus norvegicus 81 Adgrg2 ENSRNOG00000032472 ENSRNOT00000040770 1 1 3 80 X 36971424 36974118 TCACCATCTGCTGAATCGT 59 36969058 36969077 CGACAATACTTCGGAAGCAG 59 NA Rattus norvegicus 81 Dpf2 ENSRNOG00000020892 ENSRNOT00000028363 3 1 2 88 1 221260956 221260974 AGTAAGGGTGTGAGCAGTG 59 221259406 221260905 TTTCCACAAATGTCACAGGC 59 NA Rattus norvegicus 81 RT1-M6-1 ENSRNOG00000022107 ENSRNOT00000051480 1 1 4 81 20 2058462 2058726 CGATAAAGCGCACTATAGCC 59 2058770 2058788 TCCCACACTCCATGTTGTC 60 NA Rattus norvegicus 81 Rad23a ENSRNOG00000003026 ENSRNOT00000084123 2 1 2 106 19 25950274 25950372 GCTATAGAAAGGCTGAAGGC 59 25950187 25950205 TGACTCAGGAGGAAGTTGG 59 NA Rattus norvegicus 81 Gpx6 ENSRNOG00000060749 ENSRNOT00000079035 3 1 2 85 17 45446848 45446868 TTTATGGCTTTGGCTCAGG 58 45445270 45445288 TACTCATAGACGGTGCCAG 59 NA Rattus norvegicus 81 Stx12 ENSRNOG00000011804 ENSRNOT00000078048 3 1 3 135 5 151072729 151072748 GACATGTATCGGAATCCGG 58 151061191 151061209 GCTTAGTTCCAAGTTGGCT 58 NA Rattus norvegicus 81 Znrd1as1 ENSRNOG00000000778 ENSRNOT00000085106,ENSRNOT00000001011 2 2 9 85 20 2083047 2083514 AGGATCCTGAGGTTTGGTG 59 2082980 2082998 CAGAGTGCTTTGCTCTCCT 60 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 2 10 10 74 18 30188421 30188439 AGTATCCAGTGCAACACCA 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 March7 ENSRNOG00000006241 ENSRNOT00000085563,ENSRNOT00000008464 1 2 2 80 3 46305798 46308046 ACACTGTCAGATTCTTCTTGG 58 46308086 46308106 CAAGTCTGTTCCAAATGAACC 58 NA Rattus norvegicus 81 Bbx ENSRNOG00000001971 ENSRNOT00000083438 3 1 2 87 11 53202292 53202315 CGGAAATGTGTATCTATTCCAAGG 60 53202361 53214545 ACTGGAAAGGACCTTTGCT 59 NA Rattus norvegicus 81 Gadd45gip1 ENSRNOG00000003011 ENSRNOT00000004027 2 1 1 84 19 25947265 25947283 TAGCGACCATGCAAGAGTC 60 25948669 25948687 CACTCTGCAATATGCTGCT 58 NA DesignNoJunction Rattus norvegicus 81 Slc36a1 ENSRNOG00000012356 ENSRNOT00000016755,ENSRNOT00000087763 2 2 2 80 10 40563930 40565136 TCATTGTCCAGAGGATCCC 59 40565180 40565198 CTGTGCCAAAGAACAGAGG 59 NA Rattus norvegicus 81 Gprc5b ENSRNOG00000016013 ENSRNOT00000065892 2 1 2 132 1 188693805 188693823 TTGGAGCAAAGATCCAGCA 60 188689949 188693709 CCATGGGATTAGTCCCACC 60 NA Rattus norvegicus 81 P2rx2 ENSRNOG00000037456 ENSRNOT00000085661,ENSRNOT00000056694,ENSRNOT00000056693,ENSRNOT00000056692,ENSRNOT00000081447 3 5 5 136 12 52398214 52398232 GTCGGAAGACAAAGTGTGG 59 52398429 52398526 TGTGAACCCTCATGCTCTC 59 NA InUTR Rattus norvegicus 81 Cyp2j10 ENSRNOG00000042224 ENSRNOT00000058163 2 1 4 80 5 115204775 115204793 TGGCTGGATTTAACTTGCC 58 115201691 115203024 TAACCAACCACTGTGAGGG 59 NA Rattus norvegicus 81 Nprl3 ENSRNOG00000020541 ENSRNOT00000066430 2 1 2 83 10 15629976 15629994 AAACCACGTAGCAGATACG 58 15630041 15637126 AATAGCATCCGAGAACCTG 57 NA Rattus norvegicus 81 Pfkfb2 ENSRNOG00000004162 ENSRNOT00000037679 3 1 5 98 13 47423152 47423170 AAACTTACTCCTGTGGCCT 59 47415473 47422656 ATTCTCCACTTCAGTTGGC 58 NA Rattus norvegicus 81 Pfkfb2 ENSRNOG00000004162 ENSRNOT00000050354 2 1 5 102 13 47421968 47421986 AATTACAGTGTTGGGAGCC 58 47415472 47421903 CATTCTCCACTTCTTGGGTC 58 NA Rattus norvegicus 81 Hist1h2bo ENSRNOG00000054296 ENSRNOT00000086309,ENSRNOT00000091176 2 2 2 129 17 44793464 44793482 GTCACCAAGTACACCAGCT 60 44756638 44756659 AGTCTCCACTCAGATAAGTCTG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rhpn1 ENSRNOG00000007597 ENSRNOT00000075958,ENSRNOT00000010065 3 2 4 80 7 116743372 116743391 CCTACAACTGCTGAAAGAGG 58 116743431 116743560 ATAGTAACACTCTCACCCTCTG 59 NA Rattus norvegicus 81 Arhgef9 ENSRNOG00000007733 ENSRNOT00000063861 1 1 5 80 X 64273629 64273648 GAGCTTGTGAGGTTCTTCAG 59 64273001 64273586 AGCAGAGTTGACACATGTG 58 NA Rattus norvegicus 81 Stt3b ENSRNOG00000011922 ENSRNOT00000017243 2 1 2 81 8 123326998 123327017 TCATCAACCTCATCCCTCTC 59 123317690 123326959 GTGCTATATGCTATGTAGACTCTC 58 NA Rattus norvegicus 81 Grip1 ENSRNOG00000004013 ENSRNOT00000005545,ENSRNOT00000088861 1 2 4 80 7 64769196 64769215 AAACCTCACAATTTCCACCA 58 64769257 64775476 AGCTAAAGACACATGAGCTG 58 NA Rattus norvegicus 81 Pus10 ENSRNOG00000054151 ENSRNOT00000083707,ENSRNOT00000083763 2 2 2 80 14 108443514 108443535 GAAGCCTACAAGTGGATAACTC 59 108443575 108446270 CACTTCGAACAAGCTCTTCC 59 NA Rattus norvegicus 81 Parp16 ENSRNOG00000029127 ENSRNOT00000045106,ENSRNOT00000079548 2 2 2 80 8 70723515 70726651 GTCACCTGAACAAGACTTCTC 59 70726691 70726711 GAGGACTATAAATGAGGGCCA 59 NA Rattus norvegicus 81 Lpin1 ENSRNOG00000004377 ENSRNOT00000084155 3 1 2 81 6 41838909 41838927 CAACACATCTGAGGACGAG 58 41835610 41838866 AGCTCTAGAGGAATCCATCAG 59 NA Rattus norvegicus 81 LOC102553099 ENSRNOG00000049740 ENSRNOT00000083841,ENSRNOT00000073436 2 2 2 80 11 61467130 61468657 AACATCTATCTGCATGTCCAG 58 61467070 61467090 AGTCTCGATAATCTCAAAGCC 58 NA Rattus norvegicus 81 Znfx1 ENSRNOG00000008194 ENSRNOT00000055127 3 1 2 158 3 163808772 163811820 CTACCAACCACAGAGGTCC 59 163808632 163808651 TGCCCATAGCCCTAAATCTC 59 NA Rattus norvegicus 81 Pde4d ENSRNOG00000042536 ENSRNOT00000067546 3 1 3 90 2 41442458 41449044 GGCTACATAAAGTTCAAGAGGA 58 41449094 41449113 ATATGTACTCCGACACCTGG 59 NA Rattus norvegicus 81 Gmcl1 ENSRNOG00000017838 ENSRNOT00000024414 2 1 3 81 4 118496283 118500914 CTTGAGAAAGACCAGGAGCA 60 118496221 118496245 AGAAGTTACAGCAGATGTATAGAGG 60 NA Rattus norvegicus 81 Slc17a1 ENSRNOG00000042692 ENSRNOT00000083829 3 1 2 86 17 43500371 43500389 CAGCTTGAAATCCAAAGGC 58 43499608 43500321 TCTCCAATCCTCAATGCAC 58 NA Rattus norvegicus 81 LOC100360638 ENSRNOG00000018936 ENSRNOT00000037975 2 1 2 61 1 84893850 84893868 ATGTTGGAGACCTACAGCC 59 84893803 84893821 CACATCACCCATTCATGGG 59 NA DesignNoJunction Rattus norvegicus 81 Strn3 ENSRNOG00000060335 ENSRNOT00000077578 1 1 2 80 6 72412701 72418131 GTACAGAATGGGATAAGGATGAC 59 72412643 72412663 CCTTCAGCTTACTCATTAGCC 59 NA Rattus norvegicus 81 Cldn6 ENSRNOG00000003648 ENSRNOT00000004845 1 1 1 62 10 13000180 13000198 TCGGACAAAGCTGACTGAG 60 13001449 13001467 TTTGCAGACCAGTAGAGGC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ddx17 ENSRNOG00000051170 ENSRNOT00000018185 2 1 5 80 7 120772355 120773297 GATGGCCCAATTTGTCTGG 59 120772293 120772311 TTTCCCATAGTCATCGGCC 60 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000057802,ENSRNOT00000040060 3 2 5 82 1 80524477 80524495 TATGGTGTGGACAAGAAGC 58 80524297 80524434 CTTTCAATTCCATGTGGATCAG 58 NA Rattus norvegicus 81 Elmo1 ENSRNOG00000059705 ENSRNOT00000090663 1 1 2 80 17 46682514 46682535 AAATCCAGACTTACACCATTGC 59 46679130 46682475 TATTAGCCATCTCCTGTCTCC 59 NA Rattus norvegicus 81 Elmo1 ENSRNOG00000059705 ENSRNOT00000090663 3 1 2 80 17 46682514 46682533 ATCCAGACTTACACCATTGC 58 46679128 46682474 AATATTAGCCATCTCCTGTCTC 57 NA Rattus norvegicus 81 Spint1 ENSRNOG00000012811 ENSRNOT00000088870,ENSRNOT00000017223 3 2 2 80 3 111057714 111057960 GTCAGTGTTAAGAGAAACCATCC 60 111057999 111058018 TCTTGTCAGTTGGAACAGGT 59 NA Rattus norvegicus 81 Kcnn2 ENSRNOG00000016675 ENSRNOT00000083642,ENSRNOT00000067262,ENSRNOT00000022530 1 3 3 80 18 39446022 39446042 CATTGGTTATGGTGACATGGT 59 39446083 39463265 CAACCTGCACCCATTATTCC 59 NA Rattus norvegicus 81 Creb1 ENSRNOG00000013412 ENSRNOT00000018326 1 1 2 80 9 71255039 71255058 ATTCAGTCTCCACAAGTCCA 59 71255803 71262310 AGTTGAAATCTGAGTTCCGG 58 NA Rattus norvegicus 81 Clps ENSRNOG00000000510 ENSRNOT00000000611,ENSRNOT00000085996 3 2 2 156 20 5804162 5805501 TTTATCAACCTGGAGGACGG 60 5803646 5803667 TGTAGTAGATCCCATAGAGGGT 59 NA Rattus norvegicus 81 Ap1b1 ENSRNOG00000008786 ENSRNOT00000089866 1 1 2 98 14 85271593 85272701 ACAGCCTGATTGGAGACAG 59 85272763 85272781 CACTTAAGCCACTGCTGAC 59 NA Rattus norvegicus 81 Cmtr1 ENSRNOG00000000532 ENSRNOT00000000640 3 1 2 137 20 8366503 8366933 TGTCAGGACTGTGACTGAG 59 8367032 8367525 TAGTAGCAGGTATGGAATGGG 59 NA Rattus norvegicus 81 Cmtr1 ENSRNOG00000000532 ENSRNOT00000083108 3 1 2 80 20 8325317 8325337 AACACCTGAGATTTCCAAACG 59 8325376 8327463 TTCATTGTTACCGTATGCAGAG 59 NA Rattus norvegicus 81 H3f3b ENSRNOG00000003220 ENSRNOT00000004329 1 1 1 60 13 99101081 99101103 GTGAAGAAACCTCATCGTTACAG 60 99099788 99099807 GATAGCGTCTGATTTCTCGG 58 NA DesignNoJunction Rattus norvegicus 81 Cacna1g ENSRNOG00000060528 ENSRNOT00000092024 2 1 2 87 10 82144138 82146405 GAGAAGGAATCTAATGTTGGACG 59 82139446 82139464 AGAGTAGTAGGGCTTGCAC 59 NA Rattus norvegicus 81 Kras ENSRNOG00000009338 ENSRNOT00000012887 1 1 2 86 4 179498593 179498611 GTAGACACGAAACAGGCTC 58 179486810 179498543 GTCAACACCCTGTCTTGTC 58 NA Rattus norvegicus 81 Zfp9 ENSRNOG00000006726 ENSRNOT00000065579,ENSRNOT00000079053 1 2 3 91 4 150520267 150520285 TTACGTAGGAGCTGTGGTG 59 150518987 150519522 TCTCCTTTCCTTGCAGTCC 59 NA Rattus norvegicus 81 Ift88 ENSRNOG00000009278 ENSRNOT00000076839,ENSRNOT00000012988 1 2 2 80 15 37720362 37725216 GGAACGTGAAAGGAAAGCC 60 37725260 37725278 AAGGAGGCTTCGATCACAG 60 NA Rattus norvegicus 81 Pla2g12a ENSRNOG00000057470 ENSRNOT00000087287 1 1 2 93 2 235321272 235322663 GTGTTCATCTGAACATTGGCA 60 235322718 235322736 CAGTCGTTCTTGCCTTTCC 59 NA Rattus norvegicus 81 Fcer2 ENSRNOG00000001005 ENSRNOT00000001332 1 1 2 80 12 2239911 2239930 TCTCCCATGTTACCAAGGAC 59 2239650 2239870 TTTGTGACATCTGAAGAGCCT 60 NA Rattus norvegicus 81 Kif23 ENSRNOG00000014080 ENSRNOT00000091755 1 1 2 80 8 66884314 66884334 TGCAGTTTGATCCCATAAAGC 59 66881334 66882382 ATTGTGGGAGTACAGCCTC 59 NA Rattus norvegicus 81 Wnk1 ENSRNOG00000009956 ENSRNOT00000013621 1 1 4 83 4 152495394 152495412 ACAGCACCAGGACATACAG 59 152492807 152495347 ACGACGAGGCATACTTGAG 60 NA Rattus norvegicus 81 Pik3r4 ENSRNOG00000013669 ENSRNOT00000090707,ENSRNOT00000018654 2 2 2 80 8 114333009 114333027 AACGTGCTCAAATGATGGT 58 114333069 114339148 AGAATAGACCTCGTCGTAGTG 59 NA Rattus norvegicus 81 Cd86 ENSRNOG00000038835 ENSRNOT00000003129 3 1 2 81 11 67082200 67082220 TCGTCAAGACATGTGTAACCT 60 67094345 67101789 GGAACAGCATCTGAGAGCA 60 NA Rattus norvegicus 81 Susd2 ENSRNOG00000033389 ENSRNOT00000079996,ENSRNOT00000089005 1 2 3 91 20 13971558 13971576 TATCATCTTCGGAGGCCTG 59 13971631 13971796 TCCACAAGTTCCTGTTGCT 60 NA Rattus norvegicus 81 Hdac3 ENSRNOG00000019618 ENSRNOT00000084735,ENSRNOT00000060417,ENSRNOT00000078667 3 3 3 80 18 31077930 31077948 ATATCCCTCTCCTGGTGCT 60 31077771 31077890 GCAGAGATGTTTCATATGTCCAG 60 NA Rattus norvegicus 81 Tnfrsf10b ENSRNOG00000038483 ENSRNOT00000066128 2 1 2 109 15 51454619 51454638 TCTAGGCTGTGAACAGGAC 59 51454711 51461140 GAGTTCTGTCAGGTTCCGT 59 NA Rattus norvegicus 81 Astn1 ENSRNOG00000005667 ENSRNOT00000075976,ENSRNOT00000007660 2 2 4 80 13 76298274 76335763 AGACATCAGTAAAGGCAACTC 58 76335804 76335823 TATTCTGGGAATGTCAGCAC 58 NA Rattus norvegicus 81 Astn1 ENSRNOG00000005667 ENSRNOT00000075976,ENSRNOT00000007660 3 2 4 80 13 76289671 76295384 CTTCTTGACTGGGATGGTG 58 76295428 76295446 TACATCACAGACCGAACCT 58 NA Rattus norvegicus 81 Kcnn1 ENSRNOG00000029264 ENSRNOT00000080467,ENSRNOT00000044291 2 2 2 80 16 20339606 20339624 CTGTGCTGTTGGTCTTCAG 59 20339664 20341729 GTTTATCATGGTACCTCTCACAC 59 NA Rattus norvegicus 81 LOC102551071 ENSRNOG00000054140 ENSRNOT00000085644 3 1 3 114 7 2907653 2907671 TGGACTTTGAGCACTTCCT 59 2907370 2907576 GTTGCTGTCCCTTCTTTGTC 60 NA Rattus norvegicus 81 Wnt1 ENSRNOG00000061818 ENSRNOT00000090156 3 1 1 63 7 140467184 140467202 CTACGCTTCCTCATGAACC 58 140467644 140467662 GCATCTCAGAGAACACGGT 60 NA DesignNoJunction Rattus norvegicus 81 Msn ENSRNOG00000030118 ENSRNOT00000076181,ENSRNOT00000076377 3 2 3 80 X 65279638 65280648 ACTCAATAAGAAGGTGACTGC 58 65280690 65280708 TCTGGATAGAACTTGGCCC 59 NA Rattus norvegicus 81 Ugt2b17 ENSRNOG00000001990 ENSRNOT00000089471 1 1 3 80 14 22780361 22780379 CTGCATGACCTTAGCTGGT 60 22780422 22806606 AGGGTATGAAGGGATCACAC 59 NA Rattus norvegicus 81 Pde2a ENSRNOG00000019560 ENSRNOT00000026586,ENSRNOT00000090959 1 2 2 80 1 166623491 166623770 AGAAGATGGCTGAAGTGGG 59 166623813 166623832 CACAGGAGGTCATAAGGAGG 59 NA Rattus norvegicus 81 Ly6h ENSRNOG00000007334 ENSRNOT00000056554,ENSRNOT00000076014,ENSRNOT00000076009 3 3 3 60 7 116606417 116606435 ACTGATACCGTTTGTGCCA 60 116606140 116606393 AATGATCCTTCCTGCTGCT 59 NA DesignRelaxed Rattus norvegicus 81 RGD1560860 ENSRNOG00000026376 ENSRNOT00000077324,ENSRNOT00000091037,ENSRNOT00000035675 1 3 3 80 17 59714733 59714753 TTCAGAAGCTTGATGTGACAC 59 59714795 59723845 ATTCTCGCAACTCATCCCA 59 NA Rattus norvegicus 81 Drp2 ENSRNOG00000026704 ENSRNOT00000085693,ENSRNOT00000039864 2 2 2 80 X 105268445 105268464 AGAGGCTTAAACAGCTCCAG 60 105268504 105270498 GAACTTGAACAGAAGTGGAGAG 59 NA Rattus norvegicus 81 Acot7 ENSRNOG00000010580 ENSRNOT00000000079,ENSRNOT00000014213 1 2 2 80 5 169400328 169406759 GTGCCTCCTATTGTGTATTTACG 60 169406799 169406817 CATGCGTTCTAGCTTCTGG 59 NA Rattus norvegicus 81 Uaca ENSRNOG00000012868 ENSRNOT00000089126 3 1 2 85 8 65733627 65736425 CTAACCACTCACTTTCAGCA 58 65736472 65736491 GGATACTTTCTCCACATCCC 58 NA Rattus norvegicus 81 Atg12 ENSRNOG00000000157 ENSRNOT00000000170 2 1 1 60 18 40724700 40724718 CAGACCAAGAAGTTGGGAC 58 40723953 40723974 TGTAGGACCAGTTTACCATCAC 60 NA DesignNoJunction Rattus norvegicus 81 Capn3 ENSRNOG00000008609 ENSRNOT00000080533,ENSRNOT00000082876 2 2 4 101 3 112242570 112250999 AGAGGCCAAAGGAAATTTGTG 60 112252327 112252345 CTGCAAGAAACCAGCAGTC 60 NA Rattus norvegicus 81 Capn3 ENSRNOG00000008609 ENSRNOT00000079079,ENSRNOT00000011761 2 2 4 99 3 112229137 112229155 TCTTTACCTGGATCCCGAG 58 112229218 112250998 ACAAATTTCCGGAGGTCTC 58 NA Rattus norvegicus 81 Golgb1 ENSRNOG00000030314 ENSRNOT00000083152 2 1 2 80 11 66799436 66799455 CTCCACGAAGATGAACTCCT 59 66797945 66799395 CTGCATCACCCTCAATTTCTG 60 NA Rattus norvegicus 81 Golgb1 ENSRNOG00000030314 ENSRNOT00000003255 1 1 2 82 11 66801382 66801400 GAGAAGGAGGAACTCATCG 57 66797949 66801336 ATCACCCTCAATTTCTGGG 57 NA Rattus norvegicus 81 Lrrc56 ENSRNOG00000016697 ENSRNOT00000022867,ENSRNOT00000091150 2 2 2 80 1 214194947 214194968 TCCTATAGAACAGGAAGACCAG 59 214195007 214196548 GATGTCCTGGAAAGTTCTGAG 59 NA Rattus norvegicus 81 Mxra7 ENSRNOG00000042915 ENSRNOT00000074286 3 1 2 99 10 105752613 105752631 CCTTTAAGTACAGCCCTGG 58 105745373 105752552 AGCTGTTCTTTCTGAACTCTC 58 NA Rattus norvegicus 81 Chn2 ENSRNOG00000009411 ENSRNOT00000084256 1 1 2 80 4 84374445 84374463 GTAGAGGGTGCCTACATCC 59 84374507 84376261 GGTCTGGTTTCCAAACCTC 58 NA Rattus norvegicus 81 Parp4 ENSRNOG00000051196 ENSRNOT00000076667,ENSRNOT00000076676 3 2 4 175 15 36823466 36824068 AAGTCGTTGAGGTCTCTGC 60 36825286 36825305 GTGTGCTGCTATCACAAAGG 60 NA Rattus norvegicus 81 Parp4 ENSRNOG00000051196 ENSRNOT00000076667 3 1 4 80 15 36836270 36836288 ATCTGGACAGAAGCTCTGG 59 36836331 36837318 TTTACTCACGTCATTCAGGC 58 NA Rattus norvegicus 81 Clpb ENSRNOG00000019693 ENSRNOT00000026665 3 1 2 112 1 166781274 166781292 GTACAGGTTCTCCTTGCTG 58 166781368 166797000 CGAGTGACTAGGACTTCCA 58 NA Rattus norvegicus 81 Nlrc3 ENSRNOG00000024210 ENSRNOT00000036205 2 1 2 132 10 11824670 11824688 GATATCTGCTCCTGGGAGG 59 11824784 11824807 CTTTCTCCTTTGCCCTCCT 59 NA Rattus norvegicus 81 Ablim3 ENSRNOG00000019365 ENSRNOT00000080365 1 1 2 91 18 57143385 57146056 ATTACTACCGCTCAGCTGG 59 57141346 57141364 CTTGCTCTTGGTTGCTGTG 60 NA Rattus norvegicus 81 Llgl2 ENSRNOG00000004834 ENSRNOT00000080714 3 1 2 108 10 104378472 104378789 AACGTACAGGTCTGTCGTG 60 104378861 104378879 TGAACTGGAACAGATCCCG 59 NA Rattus norvegicus 81 Tmbim6 ENSRNOG00000055579 ENSRNOT00000091050 1 1 3 83 7 141067354 141067373 GCATTGACCTCTTCTTGGAC 59 141067419 141069669 GGTCAATGGGCTTCTTCTC 58 NA Rattus norvegicus 81 Tmbim6 ENSRNOG00000055579 ENSRNOT00000091050 2 1 3 83 7 141067354 141067372 GCATTGACCTCTTCTTGGA 58 141067419 141069669 GGTCAATGGGCTTCTTCTC 58 NA Rattus norvegicus 81 Tmbim6 ENSRNOG00000055579 ENSRNOT00000091050,ENSRNOT00000084674,ENSRNOT00000088176 2 3 3 80 7 141065931 141065949 TGATCTTCACCTGCTTCAG 57 141065992 141066207 CTGACATCAAGATACCTCCC 57 NA Rattus norvegicus 81 Myo10 ENSRNOG00000010161 ENSRNOT00000065897,ENSRNOT00000014022 3 2 2 80 2 77998646 77998780 CTAGAATATAGCAGAGAAGGATTGG 59 77998816 77998836 CTTCTCGATCAAGTCTAGGCA 59 NA Rattus norvegicus 81 Klf12 ENSRNOG00000009145 ENSRNOT00000012424 2 1 2 92 15 84477325 84477343 TACACAGCTGTACGGTCAC 60 84447044 84477269 GCAGAACTGAACTTTGCCA 59 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000076913,ENSRNOT00000028219,ENSRNOT00000075879,ENSRNOT00000088037 3 4 6 82 15 36972825 36976237 AACATGGGAGATGCATTTAGC 59 36972763 36972786 CCTCTGTTGTTCATATTCATACCC 59 NA Rattus norvegicus 81 Psg19 ENSRNOG00000038101 ENSRNOT00000057986 1 1 5 80 1 79681617 79685368 GGTGAACAAGCCTGTAACAC 60 79681556 79681574 CAAGTGAAGACCACTGAGC 59 NA Rattus norvegicus 81 Iqce ENSRNOG00000001241 ENSRNOT00000051565 3 1 2 80 12 16032959 16032978 TCCTTTGATTCTGACGTGGA 59 16035401 16038097 GTAAGGTGACTTTGGTGATGTG 60 NA Rattus norvegicus 81 Adamtsl1 ENSRNOG00000006956 ENSRNOT00000083160,ENSRNOT00000009127 1 2 4 80 5 104739501 104740929 CTTTGGTGATCCAAGATTACTG 57 104740969 104740988 GATGAACACCTCTGTTACCA 57 NA Rattus norvegicus 81 Rn60_5_0814.23 ENSRNOG00000051022 ENSRNOT00000076135 1 1 1 60 5 77605853 77605871 GAACTGCAACAATCCAGCC 60 77605083 77605101 AGAGACTGGGACTTGTCTG 58 NA DesignNoJunction Rattus norvegicus 81 Fbxo7 ENSRNOG00000004637 ENSRNOT00000077577,ENSRNOT00000006366 1 2 2 80 7 23818969 23820423 TTTCACACGACAAGTGCTG 59 23818907 23818926 CGGAAGATGCGTAGTTTCAG 59 NA Rattus norvegicus 81 Synj2 ENSRNOG00000017114 ENSRNOT00000066798 2 1 3 91 1 46871431 46873007 ATGCATGTGCCAAATGTCC 60 46873062 46873080 CATCTGGAATTCTGCCCAC 59 NA Rattus norvegicus 81 Abca12 ENSRNOG00000015248 ENSRNOT00000036359 1 1 2 80 9 78585567 78585586 TAACCCAACTACAAAGGCCA 59 78585504 78585527 GTTAAGACAGAAACAGTCCCAC 59 NA Rattus norvegicus 81 Cep70 ENSRNOG00000022845 ENSRNOT00000081029 3 1 3 82 8 107524065 107525333 ATATACAAAGGCAGTGTGGG 58 107525377 107525396 TTTATAGGTTGGTGAGACGC 58 NA Rattus norvegicus 81 Hdx ENSRNOG00000037799 ENSRNOT00000077587,ENSRNOT00000057378 2 2 2 80 X 82882743 82882766 TGAAGTAGGAGAGGATAATGACAG 59 82875543 82882704 TCGTTGGACTCCTCTTGAG 59 NA Rattus norvegicus 81 Hdx ENSRNOG00000037799 ENSRNOT00000077587,ENSRNOT00000057378 3 2 2 80 X 82946082 82955316 TTCAGTGTAGTCAGGACGTG 60 82946021 82946039 AGTTCCTGCTGTTCCTGAC 60 NA Rattus norvegicus 81 Alad ENSRNOG00000015206 ENSRNOT00000077013,ENSRNOT00000020625,ENSRNOT00000075916 3 3 4 108 5 78369877 78369895 AGAGTTTGCCATGTTGTGG 59 78368992 78369806 GATGATAATGTCAGCACCGG 59 NA Rattus norvegicus 81 Oxsm ENSRNOG00000005993 ENSRNOT00000078249,ENSRNOT00000008035 3 2 2 80 15 10463901 10463919 TGGGTTATGGACTCTCAGG 58 10463963 10464985 CAGCCATGCATCTTAAAGC 57 NA Rattus norvegicus 81 Fabp6 ENSRNOG00000003902 ENSRNOT00000005205,ENSRNOT00000083910 2 2 2 136 10 29193607 29193625 GTGAAATGCAGACCATGGG 59 29191728 29192621 GATGGTGGAGATCTCCACC 59 NA Rattus norvegicus 81 Fabp6 ENSRNOG00000003902 ENSRNOT00000005205,ENSRNOT00000083910 3 2 2 137 10 29192697 29193601 AGAAGTTCAAGGCAACCGT 60 29191703 29191721 TTACACGCTCGTAGGTCAC 60 NA Rattus norvegicus 81 Kat7 ENSRNOG00000022664 ENSRNOT00000031252 3 1 2 93 10 83104145 83104169 CTTGTCAAGAGAAGTTAAGGCT 58 83104073 83104091 CAAGTATCCAGCTCGTAGC 58 NA Rattus norvegicus 81 Kat7 ENSRNOG00000022664 ENSRNOT00000082160 2 1 2 80 10 83122631 83125363 GAGTTCTCAAGATTCCAGCC 58 83122570 83122591 GTCACTCTTCTGGTAGAATAGG 58 NA Rattus norvegicus 81 Cln6 ENSRNOG00000007164 ENSRNOT00000034926,ENSRNOT00000078091 3 2 2 80 8 67741613 67742497 TTCTGCTAAAGCTGATGGAG 58 67742538 67742558 CCATGATGAATGTGATGATGC 58 NA Rattus norvegicus 81 Btbd11 ENSRNOG00000005758 ENSRNOT00000044331 1 1 2 87 7 24195215 24200502 GCATTCCTAGTGAGACGGA 59 24188817 24188835 CAGTGAGAAGATGCTGGTG 58 NA Rattus norvegicus 81 Nosip ENSRNOG00000020543 ENSRNOT00000079189,ENSRNOT00000027882 1 2 2 80 1 101070016 101070034 ACCTGTATGAAAGGGAGGC 59 101070077 101071257 TCTCATAGGCCTTCATCTGC 59 NA Rattus norvegicus 81 Vtn ENSRNOG00000010031 ENSRNOT00000078897 1 1 2 80 10 65768692 65768711 AGACCTCAAGAATGGTTCCC 60 65768751 65768824 AGCTCATAGCAATACTCACCTC 60 NA Rattus norvegicus 81 Agpat4 ENSRNOG00000017731 ENSRNOT00000024213,ENSRNOT00000082958 3 2 2 80 1 48724172 48724190 CCCATGGAAGACATCCCTG 60 48722739 48724129 CTGAAAGGCATCCTTCTCCT 60 NA Rattus norvegicus 81 LOC100909867 ENSRNOG00000048417 ENSRNOT00000071907,ENSRNOT00000064437,ENSRNOT00000080402,ENSRNOT00000083774 2 4 4 80 3 3000774 3000794 GGTCATTGTCATTTGAGACGA 59 3000835 3001452 GGTCTTCTTGCCTTTGAAGG 59 NA Rattus norvegicus 81 LOC100909867 ENSRNOG00000048417 ENSRNOT00000071907,ENSRNOT00000080402,ENSRNOT00000083774 3 3 4 80 3 2970211 2970745 ATGACCAGGATGATTTCTCTG 58 3000479 3000498 TGAATCTCTTCCCATCTGTG 57 NA Rattus norvegicus 81 LOC100911865 ENSRNOG00000036598 ENSRNOT00000078738,ENSRNOT00000091663,ENSRNOT00000072002,ENSRNOT00000073502,ENSRNOT00000018668 3 5 5 87 1 257590073 257746040 CTACATCTTTCAGAAGGGTGG 58 257746089 257746107 GTAACCAACGTCAGGTCTG 58 NA Rattus norvegicus 81 LOC100911865 ENSRNOG00000036598 ENSRNOT00000078738,ENSRNOT00000091663,ENSRNOT00000072002,ENSRNOT00000073502,ENSRNOT00000018668 3 5 5 83 1 257584945 257721301 TAGTGACATGGAAGGTCTATCTG 59 257721339 257721362 GATGGAAATGTACGAGATATGTCC 59 NA Rattus norvegicus 81 Hspbap1 ENSRNOG00000002241 ENSRNOT00000081875,ENSRNOT00000003060 1 2 2 80 11 68179557 68179576 CTTTCTAAGGTCTTGGAGGG 57 68165990 68179515 GGTTTCAAACTGAGGAACTG 57 NA Rattus norvegicus 81 Cacybp ENSRNOG00000002572 ENSRNOT00000076990 1 1 3 139 13 77958838 77958856 GGTATCCTCAGCTCTTCCC 59 77954862 77958735 CTTTCTGCAACACGATCCG 60 NA Rattus norvegicus 81 Krt2 ENSRNOG00000009563 ENSRNOT00000082863 3 1 2 81 7 143416228 143416246 AGTTCAGAGCCAATACGAG 57 143415894 143416185 GAGTTCTTCATACTTGCTGTG 57 NA Rattus norvegicus 81 Bcat1 ENSRNOG00000015514 ENSRNOT00000021193 1 1 2 124 4 179305720 179306961 CCAGGACTGCAGTAATGGA 59 179298019 179305633 GATCTTTGGCCCTAAACGTC 59 NA Rattus norvegicus 81 Bud31 ENSRNOG00000000989 ENSRNOT00000001307,ENSRNOT00000076423,ENSRNOT00000076149,ENSRNOT00000088603 3 4 4 80 12 11235613 11235632 TCTTCAGGATCCATCACCAG 59 11234575 11235573 CATAGAGTTCTCTGCTTATGGC 59 NA Rattus norvegicus 81 Pla2g4cl1 ENSRNOG00000026764 ENSRNOT00000033633 2 1 2 80 1 75468652 75468671 TTATTCTGACTCCTGTGCGT 59 75468713 75470738 CCCTGATGGTCTCAAATGGA 60 NA Rattus norvegicus 81 Slc22a1 ENSRNOG00000016337 ENSRNOT00000022254 2 1 2 81 1 48274076 48281578 CCATCGTCACTGAGTTTAACC 59 48281621 48281639 AAGAAGCCCAAGTTCACAC 58 NA Rattus norvegicus 81 Gbf1 ENSRNOG00000026048 ENSRNOT00000036156 2 1 2 80 1 266027636 266027654 CACAGTGATGAAGAGGAGG 57 266027698 266029843 GTCTAGCAAGTCCTGACTG 57 NA Rattus norvegicus 81 Kcnip2 ENSRNOG00000018018 ENSRNOT00000024750 1 1 4 85 1 262892887 262913312 ATGACCAGCTTACGGACAG 60 262913361 262913379 TTCCTGGAGTTGTTCCAGG 59 NA Rattus norvegicus 81 Rfwd2 ENSRNOG00000042492 ENSRNOT00000040505 2 1 3 86 13 76965620 76965638 GAATCACATGCAGCTCAGC 60 76965686 76979444 CTGGATCTGTTCCAATTGCTC 59 NA Rattus norvegicus 81 Ppp6r1 ENSRNOG00000018090 ENSRNOT00000082423,ENSRNOT00000024400 3 2 2 80 1 72775636 72775654 CTCAGCCTTCATTGACCAC 59 72775697 72779292 TTGTCAAATGGTGCATTCAC 58 NA Rattus norvegicus 81 Elk4 ENSRNOG00000007887 ENSRNOT00000065094,ENSRNOT00000087504,ENSRNOT00000090233 1 3 3 107 13 48801367 48804635 CTCTTCCAGTTCCCTTCTG 57 48804705 48804724 TTATGTCTTCTGCAGGTCTG 57 NA Rattus norvegicus 81 Pop1 ENSRNOG00000005243 ENSRNOT00000007190 2 1 2 82 7 73285779 73289135 AGATGATCCAGACAATGAGCA 59 73289179 73289197 GGTTCCAGATGAAGCTGTG 59 NA Rattus norvegicus 81 Slc12a8 ENSRNOG00000001792 ENSRNOT00000086495 3 1 3 92 11 70401368 70401388 GTTGGTATCGTGAGTTCCC 58 70399454 70399472 CTATCAGGAAGTCAGAGCG 57 NA Rattus norvegicus 81 Vom2r42 ENSRNOG00000043159 ENSRNOT00000089015,ENSRNOT00000089091,ENSRNOT00000045611 2 3 3 80 1 149150765 149151497 AATTTGACTCTTGGCAGATGG 59 149150705 149150726 GATTCAGGTTCACTTTGTCTCC 59 NA Rattus norvegicus 81 Naa35 ENSRNOG00000018417 ENSRNOT00000025096,ENSRNOT00000090032 2 2 2 110 17 5436598 5436617 GTGAAGTCGTGAACTTACCA 58 5429959 5432941 CGAGGAAAGTAGTTTGTAACAG 57 NA Rattus norvegicus 81 Mitf ENSRNOG00000008658 ENSRNOT00000051121 1 1 2 83 4 130172949 130342633 CTGAAGAGCAGCAGTTCTG 59 130342680 130342698 TAGCAAGATGCGTGATGTC 58 NA Rattus norvegicus 81 LOC100911951 ENSRNOG00000050450 ENSRNOT00000086164,ENSRNOT00000048592,ENSRNOT00000044195,ENSRNOT00000055915 2 4 4 80 1 265551479 265551497 AAGTACACATACCCTGCCC 59 265551294 265551437 CTTGTTCCTGTCCATCTTCTG 59 NA Rattus norvegicus 81 Slc4a7 ENSRNOG00000005957 ENSRNOT00000068171 3 1 3 142 15 11874675 11881758 CTTGCTTGAAAGGAATGGGA 59 11872507 11874573 TCATGTCAACCTTGCTAAAGTC 59 NA Rattus norvegicus 81 Has3 ENSRNOG00000059362 ENSRNOT00000081116,ENSRNOT00000083515 1 2 2 80 19 39070940 39071876 TGGAGGAGATGTCCAAATCC 59 39071919 39071937 TTGAAGGCCATCCAGTACC 59 NA Rattus norvegicus 81 Htr7 ENSRNOG00000018827 ENSRNOT00000025450,ENSRNOT00000078150,ENSRNOT00000025493 3 3 3 95 1 254670995 254671014 CTTCTGCAACGTCTTCATCG 60 254558983 254670938 GTGATCCCAAGGTACCTGTC 60 NA Rattus norvegicus 81 Ltbp2 ENSRNOG00000012094 ENSRNOT00000077458 3 1 3 83 6 108502110 108502132 TGAACTTCAGCCCACTATATCC 60 108501742 108501760 AGGATGCCACATTCCTCAG 60 NA Rattus norvegicus 81 Map1a ENSRNOG00000014230 ENSRNOT00000083005 1 1 2 81 3 113252193 113253058 CACCTTGAACAAGGGATTCTC 59 113253098 113253119 GGGTAATGAAGAGTCTCAACTG 59 NA Rattus norvegicus 81 Krt75 ENSRNOG00000043203 ENSRNOT00000088923 3 1 2 106 7 143219714 143220816 CCAGTGAACATCTCTGTGGT 60 143219627 143219645 AAGGAGTAGCCACTGTTCC 59 NA Rattus norvegicus 81 Jak3 ENSRNOG00000018669 ENSRNOT00000079784,ENSRNOT00000025312,ENSRNOT00000080146 1 3 3 80 16 20114286 20114305 TGGATGGTGAGACACATGAC 60 20114348 20114815 CCAGAAAGGACTCCATGCA 60 NA Rattus norvegicus 81 Zmym3 ENSRNOG00000003707 ENSRNOT00000004972 1 1 5 80 X 71310806 71310826 TCACTACTTTCTCCAAGAAGC 58 71310515 71310535 CAACTGAATCGGTGTTCCA 58 NA Rattus norvegicus 81 Epb41l4b ENSRNOG00000056550 ENSRNOT00000090366 2 1 2 80 5 74067056 74074624 TGTGAATGCCCAGATTGGA 59 74066994 74067017 CTGACATTAGTATCCTGGAGACTC 60 NA Rattus norvegicus 81 Map2k5 ENSRNOG00000007926 ENSRNOT00000051558,ENSRNOT00000010991 3 2 3 80 8 68281901 68281919 AGATTCCAAATAGTGGCGC 58 68275710 68281857 CTATCACATCCAGCACGTC 58 NA Rattus norvegicus 81 Adarb2 ENSRNOG00000030775 ENSRNOT00000083331,ENSRNOT00000047512 3 2 2 86 17 58301184 58301203 ATACTGTCAACCTTCCTCGC 60 58280156 58301137 ACTGCTGGTACTCAGATTGTC 60 NA Rattus norvegicus 81 Hrg ENSRNOG00000001809 ENSRNOT00000081864,ENSRNOT00000090031,ENSRNOT00000047595 2 3 3 81 11 81631770 81631788 CGACAAGTACAAAGCGGAG 59 81625154 81631729 CCCTCCTCTCATTCTTATAACCC 60 NA Rattus norvegicus 81 Hrg ENSRNOG00000001809 ENSRNOT00000081864,ENSRNOT00000090031,ENSRNOT00000047595 1 3 3 80 11 81636986 81637007 CCACAAGATACTCCAATGAGTC 59 81635619 81636945 TATATGCCGAAGAGACGGA 58 NA Rattus norvegicus 81 Krt77 ENSRNOG00000036865 ENSRNOT00000055336 1 1 2 81 7 143463259 143463277 CTCTGCAGAGTCAAGTGAG 58 143462325 143462346 GACTGAGGATCGTGAAGTC 57 NA Rattus norvegicus 81 Trmt11 ENSRNOG00000014240 ENSRNOT00000083276 3 1 2 126 1 29432190 29432209 CCTTGAATCGCTATCTGCTG 59 29436642 29440768 GGAGATTTATTCTTTGTCTCCTGAC 60 NA Rattus norvegicus 81 Camsap3 ENSRNOG00000000986 ENSRNOT00000084906 3 1 2 85 12 2145514 2145533 CAGAACAAGAAGCAACCCAG 60 2145581 2148311 CTTGCGGTATCGAATCGAG 59 NA Rattus norvegicus 81 Pax6 ENSRNOG00000004410 ENSRNOT00000089525 1 1 3 98 3 95715314 95716109 GAATTCTGCAGACCCATGC 59 95716266 95716284 TCTCGTAATACCTGCCCAG 59 NA Rattus norvegicus 81 Mefv ENSRNOG00000008134 ENSRNOT00000011073 2 1 3 92 10 12048739 12048760 GCAAGGACTACAGCAATGTC 59 12048815 12048833 TTTCAAGACTCCTGGGTCG 59 NA Rattus norvegicus 81 Mefv ENSRNOG00000008134 ENSRNOT00000011073 3 1 3 93 10 12048739 12048760 GCAAGGACTACAGCAATGTC 59 12048815 12048834 ATTTCAAGACTCCTGGGTCG 60 NA Rattus norvegicus 81 Acyp1 ENSRNOG00000006744 ENSRNOT00000080009,ENSRNOT00000009086 2 2 2 113 6 109097472 109103608 AAGTACACTCAGGCTGAGG 59 109097377 109097395 CATAAAGCGGACCTTGGAG 58 NA Rattus norvegicus 81 H2afv ENSRNOG00000052275 ENSRNOT00000082893 3 1 1 60 14 86694857 86694876 CTGCAATTCTGGAGTACCTC 58 86690117 86690137 TCTTTAGAAGCATTACCTGCC 58 NA DesignNoJunction Rattus norvegicus 81 Shank1 ENSRNOG00000019207 ENSRNOT00000044257 1 1 2 81 1 100319727 100319747 CAAGGCAAAGAGACTCTTCAG 59 100319785 100328076 CTCCTTGATGATGTAATCACTTGG 60 NA Rattus norvegicus 81 LOC100911833 ENSRNOG00000037188 ENSRNOT00000079192,ENSRNOT00000084717 1 2 6 80 4 154715192 154716008 TTCACTCCCACCTGTTGTC 60 154716051 154716070 CTGCCATTTCTTCCTTGCTC 60 NA Rattus norvegicus 81 Erc2 ENSRNOG00000015148 ENSRNOT00000081999,ENSRNOT00000047118 3 2 3 81 16 3568403 3568421 AAGCAACACATTGAAGTGC 57 3568466 3618450 GTGCATCTACCTCAGTCTG 57 NA Rattus norvegicus 81 Mrpl1 ENSRNOG00000002070 ENSRNOT00000084617,ENSRNOT00000002834 3 2 2 80 14 14982699 14986627 GCAGATCTAGTTAAGAAGATCTTGG 59 14982643 14982663 AAGTTCGCCCATTATTTCTGG 59 NA Rattus norvegicus 81 Ywhaz ENSRNOG00000008195 ENSRNOT00000035628,ENSRNOT00000080676 1 2 2 118 7 75578734 75579367 CAAGAAAGGAATTGTGGACCAG 60 75578637 75578655 ACACAGAGAAGTTGAGGGC 60 NA Rattus norvegicus 81 Nsmce1 ENSRNOG00000015218 ENSRNOT00000089464,ENSRNOT00000055034 3 2 2 81 1 196858129 196858148 CAAGTACTTCCAGTCTACCG 58 196857678 196858087 GTCGAAGACTTCTGGTATGTC 58 NA Rattus norvegicus 81 Pdgfa ENSRNOG00000001312 ENSRNOT00000042117,ENSRNOT00000001775,ENSRNOT00000091476 1 3 3 97 12 17743326 17745693 GAAGTATTGAGGAAGCCATTCC 59 17745751 17745769 CAAGAAGTTGGCCGATGTG 60 NA Rattus norvegicus 81 RGD1565655 ENSRNOG00000049317 ENSRNOT00000074350 2 1 1 71 1 81594134 81594153 TAACAATGCTGAGAGCACCA 60 81593993 81594011 GTGGTTCCCAGCTTAGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Cyth3 ENSRNOG00000001065 ENSRNOT00000001412,ENSRNOT00000082529 1 2 2 80 12 12880201 12880220 GGGAACCATGTTGTATACCG 59 12879930 12880158 GATGCTCGCTTTGATGGAC 59 NA Rattus norvegicus 81 Mkl1 ENSRNOG00000018803 ENSRNOT00000032232,ENSRNOT00000088814,ENSRNOT00000078345,ENSRNOT00000064515 3 4 4 82 7 122238167 122238966 GATGACATGAAGGTGGCAG 59 122238103 122238122 TCAATCAGCTCTGTCTTGGT 59 NA Rattus norvegicus 81 Prr36 ENSRNOG00000028892 ENSRNOT00000068586,ENSRNOT00000043197 2 2 2 67 12 2580354 2580372 TCTATTTCTAGCCCAGGGC 59 2581102 2581120 AGTCCCTTCTGGACAACAG 59 NA DesignNoJunction Rattus norvegicus 81 Krt85 ENSRNOG00000008436 ENSRNOT00000011374 3 1 2 115 7 143162616 143162634 GGTGATGAACTCCAAGCTG 59 143161420 143161828 TGCTGACACAGACATTCAC 58 NA Rattus norvegicus 81 Tac1 ENSRNOG00000007374 ENSRNOT00000009888,ENSRNOT00000052333 2 2 3 80 4 33640464 33640482 CTTCTTCAGAGAATCGCCC 58 33640525 33640982 AATTGAGGAATCAGCATCCC 58 NA Rattus norvegicus 81 Angel1 ENSRNOG00000010567 ENSRNOT00000078265,ENSRNOT00000014635 1 2 2 80 6 110649115 110660491 ACAGACACTAAGCCAGATCG 60 110649054 110649073 GAAGACAGGCTCAAGTTCAG 59 NA Rattus norvegicus 81 Dmrtc1a ENSRNOG00000048295 ENSRNOT00000074259 3 1 1 70 X 72650794 72650812 GTTGACACAGCAACTCAGC 60 72651069 72651087 GATGTTGTTTCTGGGAGCT 58 NA DesignNoJunction Rattus norvegicus 81 Steap3 ENSRNOG00000049471 ENSRNOT00000071388 1 1 1 60 13 36265310 36265329 GAAGGAGTTCAGCTTTGTGC 60 36258661 36258679 CATTGTGCTCAGCATCAGG 59 NA DesignNoJunction Rattus norvegicus 81 Txnl1 ENSRNOG00000018818 ENSRNOT00000025510 3 1 2 172 18 59069651 59069671 AAGAAGATGGCATTGTTCCTC 59 59059596 59067809 GCCAACTACTCGTTTGAAGTC 60 NA Rattus norvegicus 81 AC130139.1 ENSRNOG00000058058 ENSRNOT00000083075,ENSRNOT00000089902 1 2 3 92 10 13306432 13308507 CATCAAAGGCATCCAGCTG 59 13308562 13308581 CCATCCTCCAGAAGGAACTC 60 NA Rattus norvegicus 81 Ap3s2 ENSRNOG00000043141 ENSRNOT00000082591 3 1 2 105 1 141655397 141655868 TCCAGAAGAAATTCAACAGCAG 59 141654598 141655331 GCCACCAATCAAACTTCCA 59 NA Rattus norvegicus 81 Flvcr2 ENSRNOG00000008754 ENSRNOT00000089972,ENSRNOT00000082402 3 2 4 86 6 109669576 109673378 ACCTACAAAGGGACAACCC 59 109673428 109673446 ATGGTTCAGGTGAAGGGTG 60 NA Rattus norvegicus 81 Cdk11b ENSRNOG00000017213 ENSRNOT00000023274 3 1 2 80 5 173066584 173066602 AGGAAGAGGAGGAAGAGGA 59 173066646 173067080 CGTCACTGACTTCTTCAGC 59 NA Rattus norvegicus 81 LOC100911529 ENSRNOG00000046921 ENSRNOT00000078671 3 1 2 84 12 2910719 2910737 ATTACGGATGGAATGCCCT 59 2910784 2911405 CCTCTTCTATTAGGGCAGGG 59 NA Rattus norvegicus 81 Dnaaf1 ENSRNOG00000015590 ENSRNOT00000079580,ENSRNOT00000020917 1 2 2 80 19 52240450 52240468 CAGTGGAAGATGCAGACCT 59 52240511 52242699 GAGATGTGACCTCTTCAGGG 60 NA Rattus norvegicus 81 AABR07006049.1 ENSRNOG00000046649 ENSRNOT00000064050 3 1 4 123 1 215349782 215349800 CAGGATGTGGGTCTTCCTG 60 215329837 215329855 TTACAGCAGCTGGACTGAC 60 NA DesignNoJunction Rattus norvegicus 81 Lmntd1 ENSRNOG00000015910 ENSRNOT00000021306 1 1 2 80 4 179696351 179696372 TTCTAAATCCAATGTCCCAAGC 59 179695037 179696310 TTCCGTTCTACTGCTTGGT 59 NA Rattus norvegicus 81 Numa1 ENSRNOG00000000417 ENSRNOT00000000474 2 1 2 80 1 167076997 167077015 GAGAGGCAGAAACTCACTG 58 167077682 167083463 ATTCAGTTCTTCCACCTGC 58 NA Rattus norvegicus 81 Megf11 ENSRNOG00000010634 ENSRNOT00000050649,ENSRNOT00000037941,ENSRNOT00000082401 3 3 4 80 8 70175531 70175970 TGTGAACGTGTTAGACTCCC 60 70176008 70176031 CTAAGTTCAATGTAGAAGTCCTCG 59 NA Rattus norvegicus 81 Gria3 ENSRNOG00000007682 ENSRNOT00000029031 3 1 2 99 X 127804672 127804690 AAACTGAATGAGCAAGGCC 59 127804753 127822350 TGGTCTTGTCCTTGGAGTC 59 NA Rattus norvegicus 81 Sdk1 ENSRNOG00000001103 ENSRNOT00000077967,ENSRNOT00000089775 2 2 4 80 12 14654881 14662274 CTACATCCTCAGGTACCGC 59 14654819 14654837 CAGTAGTTCACCTCTGGGC 60 NA Rattus norvegicus 81 Enah ENSRNOG00000031934 ENSRNOT00000085188 3 1 2 80 13 100302917 100306358 TTACACAGACCCAAATCCAC 58 100302856 100302874 CAGCCTGTCATAGTCAAGC 58 NA Rattus norvegicus 81 Vipas39 ENSRNOG00000049223 ENSRNOT00000073428 2 1 2 86 6 111286934 111286952 GGCCTAAGGGAGAGTACAG 59 111283008 111284761 AGATCAGAACCTTGCCCTG 59 NA Rattus norvegicus 81 Stk11ip ENSRNOG00000020107 ENSRNOT00000080524 3 1 2 87 9 82724728 82724933 CTGAAGGATCTTCAGACTTCAG 58 82724981 82724999 AGGTTTCAGTGGTACTCCC 59 NA Rattus norvegicus 81 Slc25a40 ENSRNOG00000022837 ENSRNOT00000030352 2 1 2 80 4 22619751 22619771 TTTGGATATGTCAACCTGGAG 58 22619361 22619712 GGAATTAGACCTGTAAACAACC 57 NA Rattus norvegicus 81 LOC362863 ENSRNOG00000026807 ENSRNOT00000059545 1 1 3 80 7 27295122 27295140 CCCATCTTAAGACGAGCAC 58 27295181 27295207 CAGAAATTCCATTACTGCACTG 58 NA Rattus norvegicus 81 St8sia5 ENSRNOG00000022691 ENSRNOT00000035317 3 1 2 85 18 73564366 73564385 CTCTTCATCTTCATCTGCGC 59 73564430 73603595 TCGAAGTACCTCTTGATGTAGC 60 NA Rattus norvegicus 81 Sspn ENSRNOG00000001807 ENSRNOT00000002465 2 1 1 62 4 180291583 180291601 CAGAGACACTCCGTTCTGG 60 180315486 180315505 ATGAACAGTCCAAGGTAGGC 60 NA DesignNoJunction Rattus norvegicus 81 Rassf1 ENSRNOG00000021548 ENSRNOT00000037375,ENSRNOT00000037363 1 2 2 80 8 116314189 116314212 ATTCATGGTAGTAGATGATCCTCG 60 116314248 116314402 AGTTTCCGGAAGTATATTTGGC 59 NA Rattus norvegicus 81 Kcnma1 ENSRNOG00000005985 ENSRNOT00000065542 3 1 4 84 15 924009 954150 CCGTGCCTTTGAAGATGAG 59 954198 954216 TGTGTTGGGTGAGTTCCTC 60 NA Rattus norvegicus 81 AC096601.1 ENSRNOG00000024177 ENSRNOT00000056077 1 1 1 76 7 123088766 123088784 GAGCTTGATCTACACCGGT 59 123088706 123088725 GATAGCTTCTCTTAAGGCCC 58 NA DesignNoJunction Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000081940,ENSRNOT00000074087 1 2 6 147 17 77195784 77195803 TATGTTGTTGGCTGTTGCT 58 77195914 77196911 CTTCGATTCCCACACTCTC 58 NA Rattus norvegicus 81 Srgap2 ENSRNOG00000006733 ENSRNOT00000085967,ENSRNOT00000086928 2 2 3 91 13 48071614 48075035 CATCAACAAGCAAAGGAAGC 58 48071542 48071560 AGTCAGTCAGAGAACTGCC 59 NA Rattus norvegicus 81 Phf5a ENSRNOG00000024170 ENSRNOT00000090984 2 1 2 181 7 123100631 123101804 TGTAGGTGATGGCAAATGTG 59 123095890 123100490 AACCATCTCTATCCTTCTCCTG 59 NA Rattus norvegicus 81 Pds5b ENSRNOG00000001098 ENSRNOT00000040830,ENSRNOT00000001464,ENSRNOT00000064951,ENSRNOT00000050733 3 4 4 80 12 747977 747998 TTCTTGGAGATGATCAAGTTCC 58 748036 751573 CTTGATAAGAGCGCTGATAGAC 59 NA Rattus norvegicus 81 Chac2 ENSRNOG00000001531 ENSRNOT00000002094 1 1 1 60 14 115386429 115386447 TGACCCTTGTTGAAGATCC 57 115384903 115384922 CCGACTGGTAGTTTGTAAGC 59 NA DesignNoJunction Rattus norvegicus 81 Mgrn1 ENSRNOG00000003234 ENSRNOT00000004416 3 1 2 82 10 10844878 10844896 GAGCTCTGTCTCCCATCTC 59 10841862 10844835 TGGGACACTGTCAGAATTAGAG 60 NA Rattus norvegicus 81 Apoe ENSRNOG00000018454 ENSRNOT00000080453,ENSRNOT00000041891,ENSRNOT00000091574 1 3 3 100 1 80614202 80614220 AACCGCTTCTGGGATTACC 60 80613722 80614139 ATCAGTACCGTCAGTTCCTG 59 NA Rattus norvegicus 81 Gstz1 ENSRNOG00000047708 ENSRNOT00000072215,ENSRNOT00000082027 1 2 2 138 6 111176935 111180596 GCCTGTTCTCTATTCCTATTTCC 59 111181826 111182327 CTGAAATTCCTCGGAGAACTG 59 NA Rattus norvegicus 81 Xrcc6 ENSRNOG00000006392 ENSRNOT00000066849 2 1 2 80 7 123280378 123280396 AGGCCTATGGGCTAAAGAG 59 123280437 123280459 ATTAGTCAGTCTTCTCCAAGTG 58 NA Rattus norvegicus 81 Mdc1 ENSRNOG00000032813 ENSRNOT00000081676,ENSRNOT00000086914,ENSRNOT00000046798 1 3 5 80 20 3409193 3409317 ATCAGAAGCAGATTCACCC 57 3409131 3409150 GGATCTTCTTCCTTGACGAC 58 NA Rattus norvegicus 81 Myof ENSRNOG00000016117 ENSRNOT00000021546 1 1 2 80 1 256664564 256664583 AATGATGTAGTTGGGACGAC 58 256660618 256664522 CTCTCCTGTATTTGCTTCCA 57 NA Rattus norvegicus 81 Pdzd11 ENSRNOG00000002838 ENSRNOT00000076360,ENSRNOT00000076028,ENSRNOT00000003872 3 3 4 80 X 70459695 70460242 TTCATCTCCAAGGTGATTCCA 59 70459635 70459656 ATCATTCACAGCTAGAACTTGG 59 NA InUTR Rattus norvegicus 81 Hmg20b ENSRNOG00000020601 ENSRNOT00000028002,ENSRNOT00000086194 3 2 2 134 7 11241297 11241788 GAATGGACACAAGGGTGTG 59 11242245 11242263 AAAGCCACGTTCATCTTCC 59 NA Rattus norvegicus 81 Hsd17b4 ENSRNOG00000015840 ENSRNOT00000021646 2 1 2 84 18 44879543 44891047 CAAGTGGACCATTGACCTG 59 44891094 44891113 AATTGTGATGGTCGTGTCAG 59 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000017851,ENSRNOT00000079440,ENSRNOT00000083079,ENSRNOT00000092180,ENSRNOT00000082718,ENSRNOT00000090520 2 6 7 84 1 102915772 102920320 TTACTGAAGGGTCTGGCTG 59 102920368 102920386 CATGCAGAAGATCCAGTGC 59 NA Rattus norvegicus 81 LOC100366140 ENSRNOG00000048116 ENSRNOT00000037288,ENSRNOT00000074090 1 2 2 80 1 87777167 87777268 ACCAGCGAATTCATGTAAGAG 59 87777107 87777127 TGATTAGCTCTGACCTGTAGG 59 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000082271,ENSRNOT00000088945,ENSRNOT00000040762 1 3 10 88 7 117248581 117249303 ACTGCAGTCGGATATTCGG 60 117248511 117248529 TACCATCAGCCTTGTCCAG 59 NA Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000081021 3 1 10 91 7 117253868 117257199 GTTGTGTAGATGAACGAGACC 59 117253488 117253507 GTCACTGATGTGCCTTTGAG 59 NA Rattus norvegicus 81 Fermt2 ENSRNOG00000009102 ENSRNOT00000012400 2 1 2 80 15 19814016 19814034 AACTGACATCAATCCCGAG 57 19811428 19813973 AAGATCCGTGCTGTTATCTG 58 NA Rattus norvegicus 81 Micu1 ENSRNOG00000043436 ENSRNOT00000082734 2 1 2 80 20 29322182 29322201 ATAACACCCAATGAGAAGCA 57 29330323 29336581 CCAGAATTCCTTTCCATCGA 58 NA Rattus norvegicus 81 Slc11a2 ENSRNOG00000019550 ENSRNOT00000086751,ENSRNOT00000081327,ENSRNOT00000026531,ENSRNOT00000089912 1 4 4 80 7 142043311 142043439 TTGGACAAATATGGCTTGCG 60 142043250 142043270 CTCATATCCAAATGTGAGGGC 59 NA Rattus norvegicus 81 Mff ENSRNOG00000015428 ENSRNOT00000089142 2 1 3 80 9 90893523 90893541 CACAGATCAGATTCTGCCC 58 90893585 90898156 TGGTGTCACAGTGTACTCC 59 NA Rattus norvegicus 81 Pik3ap1 ENSRNOG00000013309 ENSRNOT00000017938,ENSRNOT00000077962 2 2 3 172 1 260552342 260553753 AGAGCATCAGGAAAGAGCC 60 260552188 260552207 CTCTTTGAAGTGCAGCACAG 60 NA Rattus norvegicus 81 Ugp2 ENSRNOG00000008079 ENSRNOT00000081245 2 1 2 80 14 106233394 106234245 GAGAGTAGTTCAGGATCTTAGC 58 106233335 106233356 TCTAGTTCTTGGAGAATGACCT 58 NA Rattus norvegicus 81 Cpg1 ENSRNOG00000060278 ENSRNOT00000078938 3 1 1 79 6 123034538 123034556 TCCAGAGAAGAGGATGAGG 58 123042373 123042393 GAATAACTGACTCCTCGACTG 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Sptlc2 ENSRNOG00000012210 ENSRNOT00000016324,ENSRNOT00000085458 2 2 2 80 6 111376568 111379715 GGAAATTGGGAACCTGGAC 58 111376506 111376524 TAGGTCAAAGCAGCTTCCA 59 NA Rattus norvegicus 81 Hrh3 ENSRNOG00000061153 ENSRNOT00000086761,ENSRNOT00000077308 3 2 2 95 3 175477710 175477730 GGTGGTAGACTACCTACTGTG 59 175476317 175477653 CTGTAGGAGACAGCTCGAG 59 NA Rattus norvegicus 81 Dgat2 ENSRNOG00000016573 ENSRNOT00000081669 1 1 2 81 1 164129060 164141360 AGCTCTGTAATGGGCACTG 60 164128997 164129015 CCTTGGATCTGTTGAGCCA 60 NA Rattus norvegicus 81 Gtf2b ENSRNOG00000011135 ENSRNOT00000089648,ENSRNOT00000015032 2 2 2 80 2 248724343 248724495 CCCACGCAATATAGTTGATCG 59 248724535 248724555 TCATTAGCTCTTCCCTTCAGG 59 NA Rattus norvegicus 81 Gtf2b ENSRNOG00000011135 ENSRNOT00000089648 1 1 2 80 2 248722153 248723256 CTGGTAATAGGTGTGGTAACTG 58 248723295 248723315 TGAAAGTTCTCCATTCAGACC 58 NA Rattus norvegicus 81 Gmps ENSRNOG00000051151 ENSRNOT00000076292 3 1 3 89 2 154559855 154561756 GGATTTCGGGCTATTATCATATCTG 60 154561800 154561821 GCCAATGGTAAATATTGCTGGA 60 NA Rattus norvegicus 81 Gmps ENSRNOG00000051151 ENSRNOT00000084238 2 1 3 80 2 154559801 154559822 GTACAGTCTGAAATCTTTCCCT 58 154559860 154561752 TATGATAATAGCCCTGTGTCGA 59 NA Rattus norvegicus 81 Fam78a ENSRNOG00000023352 ENSRNOT00000035580 1 1 1 101 3 11101670 11101688 GATCGTTGGCTGGATTCAG 59 11088901 11088919 TTTCCTTCCTGGAGATCGG 59 NA DesignNoJunction Rattus norvegicus 81 Map1lc3b ENSRNOG00000017905 ENSRNOT00000051352,ENSRNOT00000079382 3 2 3 81 19 53638873 53639688 CAGAAGAACGCAAACAAAGAG 58 53639731 53639749 GCTGTAGAACCTACTGGGA 58 NA Rattus norvegicus 81 Pde12 ENSRNOG00000059442 ENSRNOT00000079625 1 1 2 80 16 2361179 2363370 AGAGGTTGAACAGACATTTCAG 59 2361120 2361144 CAATCATCCTGATATCTGTATGCTG 60 NA Rattus norvegicus 81 Ccz1b ENSRNOG00000001032 ENSRNOT00000001365 3 1 2 81 12 12652931 12658160 TTGTTTATAAGGCCATGAGCG 59 12658968 12658987 AATCTTCGGCAGAAATCCAG 58 NA Rattus norvegicus 81 Trrap ENSRNOG00000025244 ENSRNOT00000076323,ENSRNOT00000030545 2 2 3 80 12 11618849 11623969 CGAGAACTTCGAGAATGTCAC 59 11618789 11618810 AGAAATGTGAGAAATCGAGGGA 60 NA Rattus norvegicus 81 Ptprj ENSRNOG00000034025 ENSRNOT00000077943,ENSRNOT00000049832 2 2 2 98 3 79258840 79258968 AAATCCAAGTTAATCCGAGTGG 59 79257515 79258785 CTTCAGATCCTCATATTCCTCTG 58 NA Rattus norvegicus 81 Ptprj ENSRNOG00000034025 ENSRNOT00000077943,ENSRNOT00000049832 3 2 2 98 3 79258840 79258967 AATCCAAGTTAATCCGAGTGG 58 79257514 79258783 GCTTCAGATCCTCATATTCCTC 58 NA Rattus norvegicus 81 Sptbn1 ENSRNOG00000005434 ENSRNOT00000083528 3 1 3 81 14 114540310 114540382 GAGAATCAGATGGAAGGAGG 57 114540248 114540266 AAGCTCCATGAACTTGGTC 58 NA Rattus norvegicus 81 Klrk1 ENSRNOG00000061739 ENSRNOT00000091890 1 1 2 83 4 163401038 163402335 TCATCACCCAGAGATGAGC 59 163400973 163400994 CTTTGTTTCTGATGCTCTTGAG 58 NA Rattus norvegicus 81 Mrps21 ENSRNOG00000024845 ENSRNOT00000034074,ENSRNOT00000083086 3 2 2 80 2 197981407 197981426 TCTGAAGTTCATTGCCAGGA 59 197975043 197981365 GTGAGGATTCTGTTCAGGGT 60 NA Rattus norvegicus 81 Lonrf3 ENSRNOG00000013092 ENSRNOT00000089266 2 1 2 80 X 122945062 122945085 CACTCAGAGAATTTCTCTACTGTG 59 122945124 122949392 TAAAGAGAAGCCTTTGCGC 59 NA Rattus norvegicus 81 Dip2a ENSRNOG00000043212 ENSRNOT00000066017,ENSRNOT00000083878 3 2 2 80 20 13114818 13114979 GAAGATGATTGTCGAGGTCAG 59 13115021 13115039 GCTTCTTTGGACTTGAGCA 58 NA Rattus norvegicus 81 Mrpl54 ENSRNOG00000020464 ENSRNOT00000027737 3 1 1 76 7 11322217 11322235 AAGCCAGACTCTGAGTACC 58 11323315 11323333 GGTTCTAGGTCCTCTAGCT 57 NA DesignNoJunction Rattus norvegicus 81 Rgs3 ENSRNOG00000024501 ENSRNOT00000080744 2 1 3 99 5 78446053 78446071 CTAGGAGGAGAATCAGGCA 58 78467493 78470065 CCTTCTATAACGTGTAGCAGC 59 NA Rattus norvegicus 81 Phf14 ENSRNOG00000005775 ENSRNOT00000065649 3 1 3 81 4 38338323 38338345 CAAGGCTGAAGACTTAAGAACTG 60 38338386 38338995 TCAGCTGAAGTTCCTGACG 60 NA Rattus norvegicus 81 Thra ENSRNOG00000009066 ENSRNOT00000012340 1 1 2 122 10 86680365 86684099 AGCTGCTGATGAAGGAGAG 59 86684185 86684203 CATGCATTCCGAGAAGCTG 59 NA Rattus norvegicus 81 Gmfb ENSRNOG00000047250 ENSRNOT00000075602 1 1 1 60 15 23604182 23604202 CCTCTGTGCTTTATCTTCTCC 58 23603592 23603610 CGTACATCATCTGCTGCTC 59 NA DesignNoJunction Rattus norvegicus 81 Psd3 ENSRNOG00000013884 ENSRNOT00000068177 3 1 4 80 16 23475372 23487947 AGTAATCTCTGTGATCATGGAGG 60 23487985 23488005 TTCCATGGTCCCATATTCTGG 60 NA Rattus norvegicus 81 LOC680663 ENSRNOG00000011120 ENSRNOT00000014811,ENSRNOT00000089579 2 2 2 80 X 110689439 110692687 GAGCCATATCAGACCTATTTGGA 60 110692726 110692745 CTCTGGACACAAAGCATTCC 59 NA Rattus norvegicus 81 Dpt ENSRNOG00000002947 ENSRNOT00000077070,ENSRNOT00000066119,ENSRNOT00000079796 2 3 3 92 13 83073934 83085477 CATGGAATGGTACCAGAAGTG 59 83085531 83085549 AATTGCCACTCTCGATCCA 59 NA Rattus norvegicus 81 Dpt ENSRNOG00000002947 ENSRNOT00000077070,ENSRNOT00000079796 1 2 3 91 13 83085515 83085533 TACTTCGAGTCAGTGCTGG 59 83085588 83097624 TACTCGGTTGTCATCCAGC 60 NA Rattus norvegicus 81 Ankrd17 ENSRNOG00000002940 ENSRNOT00000086542 1 1 2 80 14 19416028 19416048 TCTGATACTTCCAAAGCACCA 60 19416087 19418442 GTCCATGTTGACAATACCTGAG 59 NA Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000035838,ENSRNOT00000089869,ENSRNOT00000078658,ENSRNOT00000087568,ENSRNOT00000078538 2 5 6 80 20 3305443 3306023 GATGATGGAAGACAAATCTGAC 57 3306063 3306082 GCACAATGGTCTTCATATCG 57 NA Rattus norvegicus 81 Slc35g1 ENSRNOG00000029740 ENSRNOT00000044895 1 1 1 94 1 257080061 257080079 CATGCTGTAGAGATCAGCG 58 257081922 257081940 TTGGGACCTATGAACCCAG 59 NA DesignNoJunction Rattus norvegicus 81 Clec18a ENSRNOG00000022721 ENSRNOT00000048900 1 1 2 131 19 43163689 43164288 CCATTGTGCAAGCCTTGAG 60 43166178 43166196 CTAGTTGAGCCAGGCTCTC 60 NA Rattus norvegicus 81 Hiat1 ENSRNOG00000050407 ENSRNOT00000075340,ENSRNOT00000088123 1 2 2 80 1 69817727 69817746 GTCTAGCATCACCTTTCCAG 58 69817789 69818578 ATTCCCTGAACAACACCCT 59 NA Rattus norvegicus 81 Slc12a1 ENSRNOG00000005367 ENSRNOT00000008857 1 1 3 80 3 117430242 117430260 GTGCATGCTGAACATCTGG 60 117430304 117435554 ACTCCAAGACCAATTCCCG 60 NA Rattus norvegicus 81 Rin3 ENSRNOG00000007062 ENSRNOT00000065246,ENSRNOT00000077477 1 2 2 80 6 126216222 126216241 TTCCCTTCTCTGAAGAACAC 57 126216281 126239811 GCCTTCCAGGTACAATATAGAC 58 NA Rattus norvegicus 81 Ift122 ENSRNOG00000010952 ENSRNOT00000014733 1 1 2 85 4 147781981 147785027 GAGAGGAACATAATGACATCCTG 59 147785072 147788323 CTTCCCGATCTGTTTCCCA 59 NA Rattus norvegicus 81 Ugt1a8 ENSRNOG00000018740 ENSRNOT00000071200,ENSRNOT00000025652,ENSRNOT00000066839,ENSRNOT00000071003 2 4 10 82 9 95222320 95298734 CTTTCCAAGGAATTTGAAGCCT 60 95298777 95298795 TCTGAGACCATGGATCCCA 60 NA Rattus norvegicus 81 Xiap ENSRNOG00000006967 ENSRNOT00000078482,ENSRNOT00000009336,ENSRNOT00000085110 2 3 3 80 X 128446880 128446898 TGCAGATCTTGTGAGTGCT 59 128446939 128452171 TCAGTACTGATGTCTTTCTGCA 60 NA Rattus norvegicus 81 RGD1561551 ENSRNOG00000036959 ENSRNOT00000055538 1 1 2 81 4 177033411 177033429 CAGGGACAACCCTAACCTC 59 177026152 177033366 GCCATACACAACGTCTCCT 60 NA Rattus norvegicus 81 Meig1 ENSRNOG00000016283 ENSRNOT00000090779 2 1 2 94 17 78822723 78826622 GCTGTTCCCAGAAATAATTGCT 60 78826677 78826695 CTGACCATTTCTTGGCACG 60 NA Rattus norvegicus 81 Grm5 ENSRNOG00000016429 ENSRNOT00000050639 3 1 2 99 1 151730101 151730119 GAGACGGCAAATCATCGTC 59 151730182 151782379 TTTCCGTTGGAGCTTAGGG 60 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000050222,ENSRNOT00000078583,ENSRNOT00000091677 2 3 8 80 6 64838573 64838591 ACAAACATCAGTGGGATCG 58 64838633 64839958 AGAATACCAGCCTTCTTACCT 58 NA Rattus norvegicus 81 Mcc ENSRNOG00000011271 ENSRNOT00000085714,ENSRNOT00000079667 1 2 2 95 18 35780441 35780459 TATGAGGAGCGCATCACAG 60 35762729 35780383 CTCATCTTCCTCCCTGATGG 59 NA Rattus norvegicus 81 Rufy3 ENSRNOG00000003428 ENSRNOT00000092172 3 1 3 91 14 21068328 21072132 CAGCTGGAGCAAAGATTGC 60 21068255 21068274 ATCTTGTCTCCGAAGTCCTG 59 NA Rattus norvegicus 81 Crhr2 ENSRNOG00000011145 ENSRNOT00000014925 1 1 3 143 4 85329175 85329194 CCTCCTCTGCCTATACTCTC 58 85314209 85320408 CAGTAGGAGTAGGGACCTG 58 NA Rattus norvegicus 81 Rrad ENSRNOG00000011901 ENSRNOT00000081547 3 1 2 83 19 562362 562382 GTTTACAAGGTGGCTGCTG 60 562428 562448 TTCAGGTCCGTCTTCTATACC 59 NA Rattus norvegicus 81 Map3k5 ENSRNOG00000031700 ENSRNOT00000051496 1 1 2 81 1 15484258 15488399 AGAAGAACACAGTGTGCAC 58 15488444 15488462 CTGTCACAGCAGTAGACCT 59 NA Rattus norvegicus 81 Epn2 ENSRNOG00000060550 ENSRNOT00000091963 3 1 2 125 10 47812990 47824470 CTACCACGGCTCTACTTCC 59 47811326 47812901 TCCTGTTCTGCAACCTCTC 59 NA Rattus norvegicus 81 Vps29 ENSRNOG00000001274 ENSRNOT00000001717,ENSRNOT00000088905,ENSRNOT00000078683 1 3 3 80 12 39693748 39693770 GCTATGACTATCTCAAGACTCTG 58 39691563 39693711 GTTCTGGGTAATTCAGACTCTC 58 NA Rattus norvegicus 81 Immt ENSRNOG00000009097 ENSRNOT00000086291 3 1 2 80 4 99769699 99773146 GTTGAGATGGAGTCTCTAGCC 60 99773188 99773206 GGCTGTAATAGTCTGCCGA 59 NA Rattus norvegicus 81 Zscan29 ENSRNOG00000012419 ENSRNOT00000046391 3 1 2 80 3 113126803 113126828 TATGGTTTCCTCCATTCCCTG 60 113126743 113126761 ACCACTCTTGACCTTCCTG 59 NA Rattus norvegicus 81 Pigr ENSRNOG00000004405 ENSRNOT00000005853 1 1 3 107 13 47589317 47589340 GATGGAGGCAAACACATGG 59 47589571 47589589 CTTGGATTCCTCTGGTCGG 60 NA Rattus norvegicus 81 Cacna1d ENSRNOG00000013147 ENSRNOT00000051371 2 1 4 80 16 6161307 6161325 CTGAACATGGTCTTCACGG 59 6155843 6161263 AGTGAAATAGTGCTTGGGC 58 NA Rattus norvegicus 81 Mettl13 ENSRNOG00000003042 ENSRNOT00000063902 2 1 4 80 13 80441090 80441210 AAGCTTAGTGGTGCTTCCT 59 80441028 80441048 AGAGATTCATATTCCCACCGT 59 NA Rattus norvegicus 81 Anks3 ENSRNOG00000003186 ENSRNOT00000077347 3 1 2 81 10 10828697 10828938 TGTCCATGAGATGGGACAG 59 10828981 10829001 CCTCCATTTCTTCCCATTCAG 59 NA Rattus norvegicus 81 Rap1gds1 ENSRNOG00000015987 ENSRNOT00000084860 3 1 2 80 2 244304783 244330131 CTATGATAGCCATGAGGGC 57 244304721 244304739 CACAGCGACCTTAAATGGT 58 NA Rattus norvegicus 81 Flot1 ENSRNOG00000000826 ENSRNOT00000083657,ENSRNOT00000001098,ENSRNOT00000090039 1 3 6 95 20 3430207 3430225 CAAATGGCCAAGAAGGCAG 60 3429982 3430148 GATCTCTTCTGCCACCTGG 60 NA Rattus norvegicus 81 Slc2a2 ENSRNOG00000011875 ENSRNOT00000015866 1 1 2 80 2 114413624 114423583 AGAAGACAAGATCACCGGA 58 114423626 114423645 CCGATGTCATATCCGAACTG 58 NA Rattus norvegicus 81 Cldn2 ENSRNOG00000054495 ENSRNOT00000090928,ENSRNOT00000085078 2 2 2 241 X 111122742 111122761 CTTCGAGAAAGAACAGCTCC 59 111130522 111130540 CTAGGATGTAGCCCACCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Dnajc6 ENSRNOG00000052887 ENSRNOT00000086539 1 1 2 91 5 120459334 120459352 TGCACAAAGGATGTGAACC 59 120459404 120461032 GACTTCTCTGATTTCTGATCCC 58 NA Rattus norvegicus 81 Adgrl3 ENSRNOG00000030149 ENSRNOT00000044659 3 1 3 81 14 28609615 28609636 ATGGACAAGTTTCCTACATCTC 58 28536241 28609574 GTGGTAGAAATCCCTCTGAC 57 NA Rattus norvegicus 81 LOC100361584 ENSRNOG00000023561 ENSRNOT00000078495 2 1 3 80 4 158244431 158244449 CAGCGAGATGAATTTGAGC 57 158244491 158334051 TGCTTTGATCTCGTACATCTC 58 NA Rattus norvegicus 81 Actl6b ENSRNOG00000001408 ENSRNOT00000087817,ENSRNOT00000001910 2 2 2 80 12 22197561 22197581 GGCTACAACACAGACTATGGT 60 22197355 22197522 AGACAGACCCTTGACATTAGAG 59 NA Rattus norvegicus 81 Fam60a ENSRNOG00000049943 ENSRNOT00000083310,ENSRNOT00000089160,ENSRNOT00000071930 1 3 3 80 4 183406545 183408840 GAGTTTAAACGCCACAATTCTG 59 183406486 183406507 CTGGTTACTATAGCATGGAGAC 58 NA Rattus norvegicus 81 Fam60a ENSRNOG00000049943 ENSRNOT00000083310,ENSRNOT00000089160,ENSRNOT00000071930 2 3 3 80 4 183408874 183408893 AGACTCTGTCTGGAAACAGG 59 183406539 183408831 GAGCATCAGAATTGTGGCG 60 NA Rattus norvegicus 81 Fam60a ENSRNOG00000049943 ENSRNOT00000083310,ENSRNOT00000089160,ENSRNOT00000071930 3 3 3 80 4 183408873 183408892 GACTCTGTCTGGAAACAGGA 59 183406538 183408830 TGAGCATCAGAATTGTGGC 59 NA Rattus norvegicus 81 Stx7 ENSRNOG00000015670 ENSRNOT00000021318 3 1 2 175 1 22255249 22275914 TCCGCGGAAATACAAAGGA 59 22252400 22253289 TTCCTTTGACGCTGTTCAC 59 NA Rattus norvegicus 81 Ppil6 ENSRNOG00000043186 ENSRNOT00000068693 2 1 2 82 20 46236777 46236798 ATGGTTCGCAATTCTACATCAC 60 46236841 46243611 TCCTTCAATGAGTTGCCCA 59 NA Rattus norvegicus 81 Eif4e ENSRNOG00000052343 ENSRNOT00000089744 1 1 2 80 2 243840143 243841152 GTTCTTCCAGAGGAAACCAC 59 243841193 243841213 AGCAACCTCCTGATTAGACTC 59 NA Rattus norvegicus 81 Rock1 ENSRNOG00000031092 ENSRNOT00000051362 3 1 2 81 18 1281377 1285575 ACGGAAATCTTCCAGTTGGT 60 1280839 1280859 AGCCAACCTTCAATTCTTGAC 59 NA Rattus norvegicus 81 Rundc3b ENSRNOG00000008463 ENSRNOT00000087657,ENSRNOT00000030224 3 2 2 80 4 22536909 22536927 GAGAAGGATTGGATGGCAC 58 22536970 22553083 TGATGCTGTCAGAACTTTGC 59 NA Rattus norvegicus 81 Ggcx ENSRNOG00000012975 ENSRNOT00000084281 1 1 3 80 4 100281086 100281109 GAACAATCACTCCTATCTGTATGG 59 100281146 100281685 CTATCAGGGTACCAGTAGTGG 59 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000080158,ENSRNOT00000080419 1 2 12 101 20 3358368 3360397 GATCCTATACCCGCTGCTC 60 3360461 3360684 AGCCACCTTCAGGAATTCTC 60 NA Rattus norvegicus 81 Atp5f1 ENSRNOG00000046299 ENSRNOT00000075982 1 1 4 97 2 208573813 208576688 GGTCCAGGTTTGTATAATGGT 58 208573736 208573754 CAGGAAGAGGTGGTAGAGG 59 NA InUTR Rattus norvegicus 81 Acox1 ENSRNOG00000008755 ENSRNOT00000046754 1 1 2 80 10 104732211 104732992 GAGATGGGTCATGGAACTC 57 104732149 104732169 GTTGAGAATGAACTCTTGGGT 58 NA Rattus norvegicus 81 Acox1 ENSRNOG00000008755 ENSRNOT00000042372 1 1 2 80 10 104747511 104747532 CTATAACTTCCTCACTCGAAGC 59 104747450 104747472 CCATATTCCCTCATCTTTCCC 58 NA Rattus norvegicus 81 Cdipt ENSRNOG00000024144 ENSRNOT00000013691,ENSRNOT00000091295 3 2 2 80 1 198411990 198412331 ACTATACTTCCAGGCCTGC 59 198412372 198412393 AGAAATTGAACAGGTACAGGAG 58 NA Rattus norvegicus 81 Creb5 ENSRNOG00000008622 ENSRNOT00000031365 3 1 2 81 4 83527389 83527408 GATGATTCATAGGCACAAGC 57 83527451 83540414 TGGAGTCTGATCTGATAGCA 58 NA Rattus norvegicus 81 Tdrkh ENSRNOG00000020860 ENSRNOT00000028299,ENSRNOT00000081335 2 2 2 80 2 195667316 195668200 GAATCATAGGGAGAGGCGG 59 195668243 195668262 CTGATTCCTTGTCGCAAGTG 60 NA Rattus norvegicus 81 Myoz1 ENSRNOG00000040122 ENSRNOT00000011554,ENSRNOT00000085266 1 2 2 80 15 4082977 4082995 AGTGGAACTTGGCATTGAC 58 4083039 4083813 ATTGCCGTCCTGTTAAAGG 58 NA Rattus norvegicus 81 Foxn3 ENSRNOG00000004709 ENSRNOT00000083665 2 1 2 94 6 123290817 123290835 GAGAAATGGAGCCCTTCTG 58 123211233 123221568 CTGGAGAAACTGCTTGTATCTC 59 NA Rattus norvegicus 81 Fis1 ENSRNOG00000001420 ENSRNOT00000083471,ENSRNOT00000063901,ENSRNOT00000001924 1 3 3 121 12 22753562 22753580 ATGACGACATCCGTAGAGG 59 22751134 22751550 TTCATATTCCTTGAGCCGGT 59 NA Rattus norvegicus 81 Tmprss5 ENSRNOG00000008058 ENSRNOT00000086957 1 1 2 144 8 53417367 53420422 GCAGCAACCCATATCTTTCAG 60 53420525 53420546 GAAATATCCAAGACTCTGGCAG 59 NA Rattus norvegicus 81 Dclk1 ENSRNOG00000032922 ENSRNOT00000078337 2 1 3 80 2 144917460 144922289 TTCTGTAATAGCACTGGACCA 59 144922328 144922349 CAATACATTCCTGGTTGTTGGT 59 NA Rattus norvegicus 81 LOC103689943 ENSRNOG00000002314 ENSRNOT00000075870,ENSRNOT00000077828,ENSRNOT00000087156 1 3 3 83 10 58798 63035 GTTGTAAAGGTTGCTGATATGG 58 63079 63097 CAACTGAACAGTGAGAGGC 59 NA Rattus norvegicus 81 Ywhag ENSRNOG00000001436 ENSRNOT00000001954,ENSRNOT00000084730 2 2 2 80 12 23789862 23814661 TGAAGAACGTGACAGAGCT 59 23814705 23814723 CAACCACGTTCTTGTAGGC 59 NA Rattus norvegicus 81 Syne3 ENSRNOG00000005287 ENSRNOT00000035826,ENSRNOT00000082152 2 2 2 80 6 128671880 128671898 GGAACTTGTCATCTTCCCG 58 128670662 128671840 CCCTTCATACTTTGGTATTCCTG 59 NA Rattus norvegicus 81 Abcf1 ENSRNOG00000000799 ENSRNOT00000001049 2 1 3 80 20 3319641 3319783 CTGGCTCAATAACTACCTTCAG 59 3319823 3319842 CAGACATCATCCAGAAAGCC 59 NA Rattus norvegicus 81 Ldhd ENSRNOG00000019036 ENSRNOT00000044844 2 1 2 81 19 43839402 43839420 AAAGCGCAATGAACTTTGG 58 43838631 43839357 CCCAACAATGACTCTTCCT 57 NA Rattus norvegicus 81 Kdr ENSRNOG00000046829 ENSRNOT00000071405,ENSRNOT00000085089 2 2 3 80 14 34783084 34783553 GTGATTCCAGATGACAGCC 58 34783596 34783615 TTTGTTCCTGTCTTCCAGAG 58 NA Rattus norvegicus 81 Ccpg1 ENSRNOG00000053428 ENSRNOT00000090970 1 1 2 86 8 79685458 79687524 GCTCTAGATTTCAAGTCATCGA 58 79687568 79687589 GTTCTGAGTTTCAAAGGTAACC 58 NA Rattus norvegicus 81 Ccpg1 ENSRNOG00000053428 ENSRNOT00000090970 2 1 2 87 8 79685457 79687523 TGCTCTAGATTTCAAGTCATCG 58 79687568 79687589 GTTCTGAGTTTCAAAGGTAACC 58 NA Rattus norvegicus 81 Sugt1 ENSRNOG00000012594 ENSRNOT00000017086 1 1 2 80 15 61879868 61879886 AACAGAATCCAGATGACGC 58 61879927 61880487 CAATACCATCACAGTATTTCCC 57 NA Rattus norvegicus 81 Mrap2 ENSRNOG00000010545 ENSRNOT00000014007,ENSRNOT00000081848 2 2 2 80 8 94841370 94841390 CTGACTATACCTGGGAATACG 57 94841431 94850097 CGATGGAATATTTGTGAGCC 57 NA Rattus norvegicus 81 Ndrg4 ENSRNOG00000012482 ENSRNOT00000051414,ENSRNOT00000017494 3 2 3 101 19 9774386 9780740 GGACTGGAAGGAACATGAC 58 9774303 9774321 TCGTGGTAGGTAAGGATGG 58 NA Rattus norvegicus 81 Arl5b ENSRNOG00000018714 ENSRNOT00000051349,ENSRNOT00000083034 3 2 2 89 17 82080657 82080676 TTCTTATGTGGGACATCGGT 59 82080725 82083905 CGACAACAAGAATGATGAACTC 58 NA Rattus norvegicus 81 Pi4kb ENSRNOG00000021024 ENSRNOT00000040501,ENSRNOT00000080966 1 2 2 80 2 196170166 196171201 CATGCAGCAAGGTTCTCAG 59 196171244 196171263 ATGCTCATGTGGAACCTCTC 60 NA Rattus norvegicus 81 Acaca ENSRNOG00000034013 ENSRNOT00000041140 2 1 2 84 10 71547070 71560739 GATGATGGACTGAAGGCAG 58 71560787 71560805 TTCTGATTCCCTTCCCTCC 58 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000083412,ENSRNOT00000092060,ENSRNOT00000019265 2 5 9 92 9 81537272 81537291 TTGGAAAGGTGTTCATGCAG 59 81543882 81543900 CTAGAGGAGGTTCCCTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Cep89 ENSRNOG00000012140 ENSRNOT00000031236 1 1 2 130 1 91696457 91696475 GTGTCCTCAGAAAGCAGGT 60 91696563 91697348 CTCCAGCATCAAATACTTAAGACTG 60 NA Rattus norvegicus 81 Cep89 ENSRNOG00000012140 ENSRNOT00000031236 2 1 2 132 1 91696455 91696473 TGGTGTCCTCAGAAAGCAG 60 91696563 91697348 CTCCAGCATCAAATACTTAAGACTG 60 NA Rattus norvegicus 81 Rfng ENSRNOG00000050298 ENSRNOT00000078052 1 1 2 136 10 109964974 109964992 GAGAACTTGCAGAAGCTGC 60 109943872 109964575 TCAAATAATCGTGTAGGGTCCT 59 NA Rattus norvegicus 81 Dusp15 ENSRNOG00000008534 ENSRNOT00000072663 3 1 2 80 3 148422370 148422389 GCACTTCAAAGAATGTGTCC 58 148421878 148422327 GTGAAAGATAGGCAGTGCA 58 NA Rattus norvegicus 81 Gpr137b ENSRNOG00000002480 ENSRNOT00000081530 3 1 2 104 17 90701053 90701075 GTCCCAGATCTTACTTCTTTGAC 59 90701139 90745596 TTCCACCATTGGACCTTCC 60 NA Rattus norvegicus 81 Tulp3 ENSRNOG00000005767 ENSRNOT00000007634 2 1 2 80 4 161641633 161641651 CCAACTACCTGGTCTCCAC 59 161640818 161641591 TGAGATTGGATCTGAGTTTGC 58 NA Rattus norvegicus 81 Cngb1 ENSRNOG00000031773 ENSRNOT00000060351,ENSRNOT00000088645 1 2 3 80 19 10149366 10149668 CCCTAGCCTTCAAGAGACC 59 10149711 10149730 CTGTTCACCTTGACAACAGC 60 NA Rattus norvegicus 81 Sema6d ENSRNOG00000004812 ENSRNOT00000066101 1 1 2 89 3 116950081 116950099 TTGCATTGCATCACGAGAC 59 116950152 116950522 TCTTCGGTTAACAGCAGCA 60 NA Rattus norvegicus 81 Rtkn2 ENSRNOG00000000636 ENSRNOT00000068778 3 1 2 87 20 21935558 21941625 TTGATCTCAGCATTGATTCACC 59 21935492 21935511 AGGAACTGTCCATTGGTCTC 60 NA Rattus norvegicus 81 Eif4e2 ENSRNOG00000019634 ENSRNOT00000085476 1 1 2 81 9 94319010 94323058 CTTTGCCTCTGTGGAACAG 59 94323103 94323121 ATGAAAGTCACTGTGGCCT 59 NA Rattus norvegicus 81 Abca3 ENSRNOG00000050057 ENSRNOT00000072789,ENSRNOT00000079700 1 2 2 80 10 13736556 13736682 ACTCTGAAGAAACGGAAGGT 59 13736725 13736743 AAGCCAAATCAGGATCCCA 59 NA Rattus norvegicus 81 Atp2b4 ENSRNOG00000003031 ENSRNOT00000046273 2 1 2 87 13 50145518 50145536 TATTCAGAAGCAGTTGCGT 58 50145587 50149551 TTTGACCACTCTGATTGCC 58 NA Rattus norvegicus 81 Usp32 ENSRNOG00000027711 ENSRNOT00000081649 3 1 2 81 10 72417054 72472480 CCTTGGGAGTTTGAAGTTACAG 59 72416994 72417016 TGTAATATGAGAGTCCACAGGTC 60 NA Rattus norvegicus 81 Abcg2 ENSRNOG00000007041 ENSRNOT00000088983,ENSRNOT00000009546 1 2 2 80 4 88868767 88868786 CTTCCTTGACGTCATCAACG 59 88868827 88871435 TCTGTCTTGTTTGCTTCATGG 59 NA Rattus norvegicus 81 Tmc4 ENSRNOG00000059741 ENSRNOT00000085010,ENSRNOT00000080466 2 2 2 80 1 64048836 64048998 TCTGGAGAGGGTTACCTAGAG 60 64049040 64049058 CAGATAGGTGATGGCCAGG 60 NA Rattus norvegicus 81 Atp9b ENSRNOG00000032039 ENSRNOT00000090265 2 1 2 80 18 77384143 77394662 GTATTCTCCTGCGAGAACG 58 77384081 77384099 TCTGTCCCATAGGAGACAG 58 NA Rattus norvegicus 81 Aadat ENSRNOG00000011861 ENSRNOT00000015974 2 1 2 85 16 32833573 32833592 TCTTCGTCGATAATTCAGCC 58 32832511 32833527 CTGGAAGACTAAGTCCATCTG 58 NA Rattus norvegicus 81 Serpina11 ENSRNOG00000011141 ENSRNOT00000015516 2 1 2 83 6 127651198 127651216 AAGATGCAGCAGGTAGAGG 59 127649638 127651151 CAAATCCAACAGACTGGGC 59 NA Rattus norvegicus 81 Exoc1 ENSRNOG00000002144 ENSRNOT00000090470 3 1 3 82 14 34145112 34145135 CTCTTTCCTAAGCACTACATTAGG 59 34142886 34145074 GCCTTATCTGGTTACTAATGCA 58 NA Rattus norvegicus 81 Vom2r31 ENSRNOG00000031562 ENSRNOT00000047147,ENSRNOT00000090708 3 2 2 83 1 74978363 74978383 CTTATGGGACCGAATTTGTGG 59 74978423 74985459 GAAGGAAATCTGAAGGAAATGAGG 60 NA Rattus norvegicus 81 Fabp4 ENSRNOG00000010805 ENSRNOT00000014701,ENSRNOT00000077311 2 2 2 80 2 93795275 93795887 GAAAGTGAAGAGCATCATAACC 58 93795927 93795946 TTTATGGTGGTCGACTTTCC 58 NA Rattus norvegicus 81 Herc2 ENSRNOG00000013718 ENSRNOT00000019245 3 1 2 82 1 114507029 114507177 CTGCACAGGCAATGAAGTG 60 114507223 114507241 CTCCATCAGCCATCAAGCT 60 NA Rattus norvegicus 81 Clip2 ENSRNOG00000021611 ENSRNOT00000033200,ENSRNOT00000091328 2 2 2 80 12 25227391 25227409 CAAGAGGGACAAAGAGGTG 58 25227453 25229567 CACTTGTTCTCGAGAGCAC 59 NA Rattus norvegicus 81 Kif20b ENSRNOG00000018929 ENSRNOT00000054753 3 1 2 97 1 253242743 253243464 CTCAAGACATCAAGTAAGAGCT 58 253244517 253244538 TGGATATTATTGATTCTCCCGC 58 NA Rattus norvegicus 81 Fip1l1 ENSRNOG00000002275 ENSRNOT00000088448 1 1 2 80 14 36174392 36180785 TCACCTGATCTAAGGAGATTACC 59 36174334 36174352 CCGTCTTCCTTCTACTCGG 59 NA Rattus norvegicus 81 Mybph ENSRNOG00000003336 ENSRNOT00000046854 1 1 3 101 13 51034668 51034686 ACAGCTCCTTGACTGTGAG 59 51034752 51035430 ATTCTGAGGCTACCTCCCT 59 NA Rattus norvegicus 81 Fgf13 ENSRNOG00000042753 ENSRNOT00000091330 2 1 3 82 X 142247718 142247739 CTAAGTGTCACGAAATCTTCTG 57 142129518 142247675 CTTAAGCTGAGGCTCTTCG 58 NA Rattus norvegicus 81 Rbbp8 ENSRNOG00000012899 ENSRNOT00000078615,ENSRNOT00000017291 2 2 2 80 18 3208710 3208729 AGCTTGCATCAGTTCTTCAG 59 3208770 3210209 CAAATGACATATCGTGGTTGC 58 NA Rattus norvegicus 81 Ckmt1b ENSRNOG00000014573 ENSRNOT00000089230,ENSRNOT00000051354 1 2 2 80 3 113320574 113320763 ACCTATGAGGTATTTGCCGA 59 113320805 113320824 GTGCTTCATTGTTCTAGGGT 58 NA Rattus norvegicus 81 RGD1562644 ENSRNOG00000037381 ENSRNOT00000044666 1 1 1 60 X 152109991 152110009 TGTTTAGTGCTCTGCAGTC 58 152108542 152108562 TGTAACTTCATACCACCTTCC 58 NA DesignNoJunction Rattus norvegicus 81 Plxnb2 ENSRNOG00000007133 ENSRNOT00000088623,ENSRNOT00000010467 1 2 2 80 7 130145797 130145815 CGGGTAGAGGATGATGCTG 60 130145004 130145753 CACATCAACGTGGTCTTGG 59 NA Rattus norvegicus 81 Hyal4 ENSRNOG00000007212 ENSRNOT00000009458,ENSRNOT00000084706 3 2 2 86 4 52162193 52162211 CATAGGAGAAAGTGCTGCG 59 52162261 52164310 TTTGTACAGTTCTCCGCAG 58 NA Rattus norvegicus 81 Galnt6 ENSRNOG00000033059 ENSRNOT00000078848,ENSRNOT00000048488 2 2 2 80 7 142326898 142326916 CTGGTACCTGCACAATGTC 59 142326487 142326856 CCGAGATTCTTGATAGCTCCA 60 NA Rattus norvegicus 81 Stam ENSRNOG00000060817 ENSRNOT00000077368,ENSRNOT00000087129 1 2 2 80 17 81222922 81222942 GTTGAATACTGCTGAGGACTG 59 81222984 81233695 CAATCTTTAGGCCCTGTGC 59 NA Rattus norvegicus 81 Cyfip1 ENSRNOG00000011945 ENSRNOT00000088459 2 1 2 82 1 114318333 114318351 GAAAGGCTCTTGCATGTGG 60 114318397 114320294 TGCAGTGTTTCACCAAAGG 59 NA Rattus norvegicus 81 Clock ENSRNOG00000002175 ENSRNOT00000002981 3 1 3 86 14 34480764 34484605 CAGTAGTCAGTTTCAGCTTTCAG 60 34484651 34484669 GCTTCTATCATGCGTGTCC 59 NA Rattus norvegicus 81 Usp40 ENSRNOG00000018395 ENSRNOT00000064171,ENSRNOT00000085325 1 2 3 80 9 95135120 95135138 TCGTCTATACCATGGCACC 59 95132699 95135077 AAGAAGTCTTCCTGCCTCTC 59 NA Rattus norvegicus 81 Dolpp1 ENSRNOG00000017663 ENSRNOT00000064557 3 1 2 84 3 8962280 8963395 CTATAGCAGGCCCATCTCC 59 8963440 8963461 GGTTACTGTGTACTCAAACCAG 59 NA Rattus norvegicus 81 Pax8 ENSRNOG00000026203 ENSRNOT00000086447 2 1 2 80 3 1547488 1547511 ACAAGAGAAAGATGGGATAGTG 58 1547164 1547182 CTTTCGAGGACCACTACTG 57 NA Rattus norvegicus 81 Clec4a ENSRNOG00000010045 ENSRNOT00000039855,ENSRNOT00000087933,ENSRNOT00000077840 1 3 3 80 4 156063902 156064911 GGAAGAACAGGACTTCATCAC 59 156064953 156064971 TGTCGATGACCTGAATCCC 59 NA Rattus norvegicus 81 Nrip2 ENSRNOG00000042939 ENSRNOT00000055886 1 1 2 81 4 161728494 161728983 CTTTCCCTCAAGGTAGGCC 60 161729027 161729046 TCACAGTACTCTCGGTAGGA 59 NA Rattus norvegicus 81 Pdzk1 ENSRNOG00000000096 ENSRNOT00000000107 2 1 2 84 2 198997300 198997320 CTGATTAAAGAGGACGACAGC 59 198997366 198997755 CCTGCTGTACCTCCTTGAC 60 NA Rattus norvegicus 81 Dhcr7 ENSRNOG00000020776 ENSRNOT00000028195,ENSRNOT00000078979 2 2 2 80 1 217027263 217027283 GACTTCTGCCACAGATTTCTG 59 217027321 217027951 CTTATTTACAATCCCTGCTGGAG 59 NA Rattus norvegicus 81 Mcpt1l3 ENSRNOG00000031792 ENSRNOT00000043182 3 1 3 166 15 35002229 35002420 GAGAGGAGATTGTTGGTGGT 60 35002543 35003084 GACTGTGATTTCTCTTCCATTACAG 60 NA Rattus norvegicus 81 Slc1a7 ENSRNOG00000011644 ENSRNOT00000072263 3 1 4 80 5 127579904 127579923 CTACTTCCAGTTCCCTGGAG 59 127579966 127605493 AACATGTTCCTGGAGACCA 59 NA Rattus norvegicus 81 Rock2 ENSRNOG00000004496 ENSRNOT00000006403 3 1 2 103 6 42255542 42255566 GGGTAGAAGAAATCAAAGCATCC 60 42256291 42256310 TATGTCACTGCTGAGCTCAG 60 NA Rattus norvegicus 81 Clca5 ENSRNOG00000013334 ENSRNOT00000017824,ENSRNOT00000083535 1 2 3 80 2 250763783 250765227 TTGTCGGATATGACAGGAGG 59 250763722 250763740 GGAAATCCCACTGAAAGCG 59 NA Rattus norvegicus 81 Tle4 ENSRNOG00000013239 ENSRNOT00000087140 2 1 3 104 1 231498135 231498155 ATTCCTTTCCTGTCCCAAGAG 60 231458533 231482703 GAGTTGTTGCCCAATGATGG 60 NA Rattus norvegicus 81 Wnt11 ENSRNOG00000015982 ENSRNOT00000021674 1 1 1 60 1 163807146 163807165 CTACACAACAGTGAAGTGGG 59 163809700 163809719 ACTTACACTTCGTTTCCAGG 58 NA DesignNoJunction Rattus norvegicus 81 Tpst1 ENSRNOG00000000900 ENSRNOT00000084968,ENSRNOT00000001200,ENSRNOT00000065868 3 3 3 80 12 30069029 30069047 ATGATCCATACGCCAATCC 58 30051546 30068985 CTCCTTTATGGACCCTCCT 58 NA Rattus norvegicus 81 Taf9b ENSRNOG00000061102 ENSRNOT00000090833,ENSRNOT00000091234,ENSRNOT00000089640 2 3 3 80 X 77287181 77290477 ACTACTCCTACTGTAGCACC 58 77287120 77287138 TCTTTGGCTTGTCACTGAC 58 NA Rattus norvegicus 81 Ddx3x ENSRNOG00000023383 ENSRNOT00000039551,ENSRNOT00000091448 3 2 2 80 X 10404716 10405255 GGAAATACAGATGCTGGCC 59 10404654 10404675 TTCTCTGAAGTAGACCCAACTC 59 NA Rattus norvegicus 81 Ppfibp1 ENSRNOG00000031709 ENSRNOT00000083633 1 1 2 80 4 181412157 181412175 AAAGTGGGAAGAGGACAGC 60 181412666 181414737 TTTCTGTCTCAGCTAAGGTGG 60 NA Rattus norvegicus 81 Ctbp2 ENSRNOG00000017326 ENSRNOT00000023574 1 1 2 93 1 205013816 205040517 GATTTGTGAAGGTATCCGCC 59 205013742 205013760 TTCCACAGTGCAGTCTCTG 60 NA Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000045718,ENSRNOT00000082871 2 2 6 127 10 53800352 53800373 AGTAAAGGAACTCACCTACCAG 59 53800563 53848210 ATTGTTCCTCAGCCTCCTC 59 NA Rattus norvegicus 81 Trpc3 ENSRNOG00000016070 ENSRNOT00000079004 1 1 3 133 2 123348732 123348750 TCAGTCTGGTCCCTAGTCC 60 123333940 123348638 CATTATCTGCCTGGACTTTGAG 59 NA Rattus norvegicus 81 Asb5 ENSRNOG00000042630 ENSRNOT00000066639 1 1 2 80 16 39994276 40025154 TAAGCCAAGGACAAGGATCC 60 39994215 39994233 TCCTCAGAGCAAGAAGACG 59 NA Rattus norvegicus 81 Klrb1b ENSRNOG00000007310 ENSRNOT00000009594,ENSRNOT00000085887,ENSRNOT00000009904 2 3 3 80 4 162017579 162017597 AGTCTAGCTGACTGTGGTG 59 161953932 162017537 CAAGTTCCGTAGGAATCTCAG 58 NA Rattus norvegicus 81 Exosc1 ENSRNOG00000048708 ENSRNOT00000072073 1 1 2 80 1 261177911 261177930 CCCGTGGTATCAGTAATGAG 58 261171649 261177871 AATTTCTACCTTACAGGTGACG 58 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000028237,ENSRNOT00000092008 3 2 7 97 1 83711763 83711781 TCCTGTGTTCACCATCCAC 60 83711842 83711909 TGAACTCCTCAGCTTGGTC 59 NA Rattus norvegicus 81 Cyp2a3 ENSRNOG00000020817 ENSRNOT00000085008 2 1 7 117 1 83653843 83714394 TTTCAAAGGCTATGGCGTG 59 83714475 83714493 GATACGCTCCTCTACACCA 58 NA Rattus norvegicus 81 Gzmb ENSRNOG00000049976 ENSRNOT00000041430,ENSRNOT00000083961 1 2 2 80 15 35415511 35415657 TGTTAAAGCTGAAGAGTAAGGC 59 35415452 35415470 GTTTCACTTTGACGTTGCG 59 NA Rattus norvegicus 81 Aldh1l1 ENSRNOG00000047023 ENSRNOT00000085966 3 1 2 81 4 123518705 123519059 CAAGTCCCAGATTCTTCTTTCAG 60 123518646 123518665 CCAAAGGACTCCTCCTTAGC 60 NA Rattus norvegicus 81 LOC100911374 ENSRNOG00000001756 ENSRNOT00000091575 2 1 2 81 11 72805387 72806224 GTAACTTCATTAGGCAGGAACAG 60 72805328 72805347 CGGAATAGATCTGCAAGGGT 60 NA Rattus norvegicus 81 Ssmem1 ENSRNOG00000010345 ENSRNOT00000088235 1 1 2 80 4 57833051 57833069 CGAGGCAAAGGGATATGGA 59 57833111 57833909 TGATGAACTTGGTTCTCATGG 58 NA Rattus norvegicus 81 Dsc3 ENSRNOG00000017159 ENSRNOT00000077304,ENSRNOT00000064554 3 2 2 80 18 11780757 11780777 TGAAGCCTGTAAAGATGTGAC 58 11779027 11780718 TCCTTCAAACTAACTCTTCCGA 59 NA Rattus norvegicus 81 Cask ENSRNOG00000060946 ENSRNOT00000082316 2 1 3 99 X 10130008 10130026 AGGATGACCACAACTGGTG 60 10130089 10134384 GCAATGCAAGACCATTCCT 59 NA Rattus norvegicus 81 Cask ENSRNOG00000060946 ENSRNOT00000082316 3 1 3 100 X 10130008 10130026 AGGATGACCACAACTGGTG 60 10130090 10134385 GGCAATGCAAGACCATTCC 60 NA Rattus norvegicus 81 Pde4dip ENSRNOG00000018220 ENSRNOT00000087026 2 1 3 81 2 199870836 199870854 TGGAGCAGTTCATCGTGAG 60 199869701 199870547 CAGGAATATGGCTCTAAATTAGTCC 59 NA Rattus norvegicus 81 Rps27l ENSRNOG00000050473 ENSRNOT00000090977,ENSRNOT00000072573 3 2 2 124 8 72742852 72743537 TCTGGCTAGAGATCTATTACACC 59 72743619 72744253 TAATCTTGTAGCAACCTGGAC 58 NA Rattus norvegicus 81 Adk ENSRNOG00000012325 ENSRNOT00000080274,ENSRNOT00000016709 1 2 2 80 15 3094069 3094087 AAAGGTGAACTCGAAGAGG 57 3056949 3094026 ACATCATTTCCTGTAGCCAC 58 NA Rattus norvegicus 81 Clta ENSRNOG00000014635 ENSRNOT00000019737 1 1 3 81 5 59506500 59506519 CTACAAACAACCCTTCGCTG 60 59507732 59508707 TTCTGCTGCCTGTTCTAGG 59 NA Rattus norvegicus 81 Calca ENSRNOG00000011130 ENSRNOT00000055124,ENSRNOT00000014948 2 2 2 90 1 184187168 184187770 CCTTTGAGGTCAACCTTGG 58 184187096 184187115 TATAGTTCTGCACCAGTGCA 59 NA Rattus norvegicus 81 RGD1308751 ENSRNOG00000039954 ENSRNOT00000083451,ENSRNOT00000090013,ENSRNOT00000061398,ENSRNOT00000061391 1 4 4 80 17 4256429 4270621 ACAACACGAACGAAGAAGG 58 4270665 4270683 GATAGTCCTCGTTGTGCAG 58 NA Rattus norvegicus 81 Aspa ENSRNOG00000019659 ENSRNOT00000084432 2 1 2 96 10 59868425 59871367 CTAATCTGCAGGATCAAGACTG 59 59868350 59868368 GTACAGTCTCCACCCAGTG 59 NA Rattus norvegicus 81 AABR07058410.1 ENSRNOG00000007795 ENSRNOT00000010262 3 1 1 61 7 114944353 114944373 TATGGATATGGTCAGCATGCA 60 114944311 114944329 GTGCTGAGGATGTGAATGG 59 NA DesignNoJunction Rattus norvegicus 81 Pced1a ENSRNOG00000021221 ENSRNOT00000082369 1 1 2 108 3 122946280 122946944 GGACTCCATCCAAAGAGCT 59 122946081 122946099 CTGTTCAAAGCTCAGCTCC 59 NA Rattus norvegicus 81 Sp140 ENSRNOG00000022800 ENSRNOT00000078987 2 1 2 90 9 92628697 92628720 CAGGACTGTACAAAGGATAAATGG 60 92628767 92629388 ACGTGCTTGTGTATAATCACC 59 NA Rattus norvegicus 81 Senp2 ENSRNOG00000001773 ENSRNOT00000002425 2 1 2 88 11 82633946 82633964 TACAGGACGAAAGCAAGAC 58 82632575 82633894 TTGAGGAATCTCATGTGGC 58 NA Rattus norvegicus 81 Sfswap ENSRNOG00000000931 ENSRNOT00000077977,ENSRNOT00000001235 2 2 2 80 12 30795657 30795675 AAGATGGGAGTTACCTGCA 58 30794516 30795613 CCTTCAAGGGCTTCATCAG 58 NA Rattus norvegicus 81 Ccdc129 ENSRNOG00000012165 ENSRNOT00000045930,ENSRNOT00000081561 3 2 2 80 4 86223630 86230710 CCTGTGTTCTTGCACAGTC 59 86230751 86230772 TCAATTTCCTCTAAGTGCTCCT 59 NA Rattus norvegicus 81 RGD1307947 ENSRNOG00000006973 ENSRNOT00000036141,ENSRNOT00000091319,ENSRNOT00000083347 3 3 3 80 7 40308220 40309524 CCCATATGGGCTAGGAAGC 60 40308158 40308176 GTAGGCAGGTTTCTGACCT 59 NA Rattus norvegicus 81 Slc7a8 ENSRNOG00000014311 ENSRNOT00000092160,ENSRNOT00000019618 1 2 2 80 15 33382929 33383507 TCCTTACAAGAACCTTCCTAGAG 59 33382871 33382891 TAGGCGATATTAGCAAAGACG 58 NA Rattus norvegicus 81 Mpp5 ENSRNOG00000008788 ENSRNOT00000012005,ENSRNOT00000092157 1 2 2 80 6 102013315 102013336 GAACCAGCATAGATTCTGTACG 59 102013377 102014732 TCTTCAAGGACTGTGCTCG 60 NA Rattus norvegicus 81 Fbxw10 ENSRNOG00000003287 ENSRNOT00000091100,ENSRNOT00000004390 3 2 2 80 10 49295570 49295890 CATGTTTCATCAGATGATGTGG 58 49295931 49295949 TGTTATAGGGACCTTCCCG 58 NA Rattus norvegicus 81 Gpam ENSRNOG00000015124 ENSRNOT00000083215,ENSRNOT00000047903,ENSRNOT00000092170 3 3 3 80 1 275853854 275853873 TTTACCAGGTTTGTCACGAG 58 275853244 275853811 CTTCCTGGTCATCTTGCTC 58 NA Rattus norvegicus 81 Vta1 ENSRNOG00000011540 ENSRNOT00000064836 3 1 2 138 1 8857106 8878044 GGCCTACTACTCTTAAGAAACAG 58 8856990 8857008 TTGTGAAATCGTCCAGCTC 58 NA Rattus norvegicus 81 Erh ENSRNOG00000004883 ENSRNOT00000085646 1 1 2 80 6 104288058 104289629 TTGGAATTACCGGTGATTTCTC 59 104287999 104288019 ATAGTCAGCATAAGTCCTGCC 60 NA Rattus norvegicus 81 LOC689589 ENSRNOG00000009138 ENSRNOT00000012112 1 1 2 80 5 129170523 129175593 CGTCACCTAATGGTTTCTTTAGTC 60 129170466 129170487 AAGCAAAGAATCCAATTCCCAG 60 NA Rattus norvegicus 81 Cast ENSRNOG00000010286 ENSRNOT00000062055,ENSRNOT00000062054,ENSRNOT00000062052 2 3 5 80 2 1493436 1494357 CAGCCAAGGATAAAGATGGA 57 1489834 1489853 CAATCAGCTCTGACTCACTC 58 NA Rattus norvegicus 81 Cast ENSRNOG00000010286 ENSRNOT00000062055,ENSRNOT00000062054,ENSRNOT00000062052 3 3 5 80 2 1494399 1494417 AAAGGCAGGAGAAATGTGG 58 1493435 1494357 TTCCATCTTTATCCTTGGCTG 58 NA Rattus norvegicus 81 Wars ENSRNOG00000004359 ENSRNOT00000006128,ENSRNOT00000050350,ENSRNOT00000080163 1 3 3 80 6 132777441 132777460 CTTTCCCGAAGATCTTCCGA 60 132777175 132777398 TTCTGAAGTACGGGTCCTG 59 NA Rattus norvegicus 81 Wars ENSRNOG00000004359 ENSRNOT00000006128,ENSRNOT00000050350,ENSRNOT00000080163 2 3 3 80 6 132777441 132777459 TTTCCCGAAGATCTTCCGA 58 132777174 132777398 ATTCTGAAGTACGGGTCCTG 59 NA Rattus norvegicus 81 Robo2 ENSRNOG00000029598 ENSRNOT00000065748 1 1 3 83 11 11086249 11089576 CAAACATGGCACATTCAAAGC 60 11086186 11086204 AGAAATCAAGGCTCCGGAC 60 NA Rattus norvegicus 81 Ncor2 ENSRNOG00000001004 ENSRNOT00000084236 3 1 2 106 12 37012438 37012594 CCTCTGTGCTAAGAGGGAC 59 37012664 37012682 GATAGAGCCTCGGTAGCTG 59 NA Rattus norvegicus 81 Evl ENSRNOG00000014476 ENSRNOT00000080230 2 1 2 80 6 132510959 132551404 TGAAGAATTCAGCGAACAGAG 59 132551444 132551464 GGTACCCATTTCTTACTGGTG 58 NA Rattus norvegicus 81 Acsl1 ENSRNOG00000010633 ENSRNOT00000014235,ENSRNOT00000089501 2 2 2 80 16 48966311 48966330 ATGATGGCCCTTGTTTAGGT 59 48962839 48966268 CAGCCATTTCTGCAACCTG 60 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000044638 3 1 7 90 3 48198910 48198928 CGTTTCTCCTCAGTCTGCT 59 48198980 48204882 AAGATCAACCTTGCTGAAGTC 59 NA Rattus norvegicus 81 Exoc2 ENSRNOG00000060266 ENSRNOT00000092101,ENSRNOT00000090706,ENSRNOT00000077110 2 3 4 81 17 34831305 34831323 AGTCTCTGAAGAGCTGAGC 59 34831368 34835974 GATTTCAAGTCTGGCCTGC 59 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000064785,ENSRNOT00000060292 1 2 5 82 13 55114475 55115290 GATATCTCCTCAGGTGCCA 58 55114411 55114429 ATTTCTGTGCTTGTGGTGG 59 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000064785,ENSRNOT00000060292 3 2 5 83 13 55114476 55115291 AGATATCTCCTCAGGTGCC 58 55114411 55114429 ATTTCTGTGCTTGTGGTGG 59 NA Rattus norvegicus 81 Park7 ENSRNOG00000018289 ENSRNOT00000024711,ENSRNOT00000087402 3 2 3 83 5 167992676 167992694 CTCACGAAGTAGGCTTTGG 58 167988718 167992629 AGTAGCTGTAGTGACTGCC 59 NA Rattus norvegicus 81 Bsg ENSRNOG00000008414 ENSRNOT00000011275,ENSRNOT00000044275 1 2 2 88 7 12877159 12877177 CTGATCTGCAAGTCTGAGG 58 12876768 12877107 TTGGAGATAGTCTGGTCCC 58 NA Rattus norvegicus 81 Iws1 ENSRNOG00000014630 ENSRNOT00000085516 3 1 2 110 18 24874192 24879958 ATGGAGTCATCCAGGTTTCAG 60 24880030 24880048 CACTGCATGTGCAGATCTG 59 NA Rattus norvegicus 81 Trappc1 ENSRNOG00000037627 ENSRNOT00000087003,ENSRNOT00000057079 2 2 2 80 10 55925364 55925384 AGTACAAGCTGATGTATGGGA 59 55925425 55925784 AGCCATCCTTCATGTCTAGC 60 NA Rattus norvegicus 81 LOC690045 ENSRNOG00000061895 ENSRNOT00000086363,ENSRNOT00000077637 2 2 4 80 4 163845295 163845313 GATGTAAACAGACCTGCCA 58 163838420 163845251 GGAACCGAAGGAACTTCAG 58 NA Rattus norvegicus 81 Ehmt2 ENSRNOG00000030630 ENSRNOT00000081456,ENSRNOT00000047370 2 2 4 94 20 4583889 4583907 GAAATGGCGGAAAGACAGC 60 4583965 4584133 CACCATTCACTCCTCTGGG 60 NA Rattus norvegicus 81 Myo7b ENSRNOG00000015035 ENSRNOT00000021405,ENSRNOT00000090390 1 2 2 80 18 24749262 24749280 AACTGTGGCTCAATGTGAC 58 24748781 24749218 TGTACTTGGGTAGCTCCTG 58 NA Rattus norvegicus 81 Ptk2 ENSRNOG00000007916 ENSRNOT00000079599 2 1 2 80 7 114507042 114507061 TGACTATGCCGAGATCATCG 60 114504784 114505860 TAATCCCTGGCTTCATCTATTCC 60 NA Rattus norvegicus 81 Shank2 ENSRNOG00000050206 ENSRNOT00000075078 1 1 3 80 1 217565147 217573321 ATTGGAGGAACTCGATAAACC 58 217573362 217573381 GATTCTATGGCCACGTTCTC 59 NA Rattus norvegicus 81 Cyp4a1 ENSRNOG00000009597 ENSRNOT00000057095 3 1 3 81 5 134492915 134492933 AGGCAATGGCTACTCAAGG 60 134492977 134494137 CTTTGTCACCCATCTTGTGC 60 NA Rattus norvegicus 81 Spata5 ENSRNOG00000017462 ENSRNOT00000078650 1 1 2 80 2 124205976 124277549 TAGACAAGGCTCTGATGAGG 59 124277592 124277610 TTTCCCTTCTTGTTGCTGC 59 NA Rattus norvegicus 81 Siglec10 ENSRNOG00000037339 ENSRNOT00000081922 1 1 2 80 1 98519255 98519696 CGTGACAATGTATCAGTCCC 59 98519194 98519212 GAGGAGACGTAGAGACTGG 58 NA Rattus norvegicus 81 Adam33 ENSRNOG00000021242 ENSRNOT00000051404 2 1 2 81 3 123597650 123597670 ACTCCCTGATACTCATCTGGA 60 123597500 123597607 CTGGCACACCATTCTAGGT 59 NA Rattus norvegicus 81 Ebf1 ENSRNOG00000028845 ENSRNOT00000076664,ENSRNOT00000076674,ENSRNOT00000071435 2 3 4 80 10 24017207 24017228 CTATGGTTTCCAGAGGTTACAG 58 24017267 24035409 TTAAGGATCACTTCCTTTGGC 58 NA Rattus norvegicus 81 Mov10l1 ENSRNOG00000031093 ENSRNOT00000042686 3 1 2 80 7 130036129 130036147 GACATAAAGGTTGGCTCGG 59 130036191 130036961 TTCATTTGACCGCACAGTG 59 NA Rattus norvegicus 81 Epb41l4a ENSRNOG00000026050 ENSRNOT00000038247,ENSRNOT00000086729 1 2 2 80 18 26576489 26577310 GGAAGCATATCCAGAAGGAG 58 26576428 26576449 CCACTTTAGTGTATGGGATCTC 58 NA Rattus norvegicus 81 Csnk1e ENSRNOG00000013076 ENSRNOT00000088424,ENSRNOT00000018126 1 2 3 100 7 120654790 120654906 GCAAGCTGGCAATACTTCTC 60 120654709 120654727 AGGATGAGACATTGGCAGG 60 NA Rattus norvegicus 81 Zfyve27 ENSRNOG00000014903 ENSRNOT00000083287 3 1 2 81 1 261428422 261430028 AAGATGCAATAGAGGAGGACG 60 261430071 261430089 CTGAGGAAGCCATTGTCCT 59 NA Rattus norvegicus 81 Igsf3 ENSRNOG00000023851 ENSRNOT00000080176,ENSRNOT00000018895 3 2 2 81 2 203828156 203832078 CATCACAGCCCTTGAAACG 60 203832123 203832141 CAAGTCAAAGGAGTCGCTG 59 NA Rattus norvegicus 81 Sbno1 ENSRNOG00000001064 ENSRNOT00000057902,ENSRNOT00000088787 3 2 3 80 12 37627111 37627130 ACATGAGCTCTGGTGATGAC 60 37627172 37628218 TTAACCATGGATCGTCCTCG 60 NA Rattus norvegicus 81 Ptcra ENSRNOG00000042581 ENSRNOT00000067894,ENSRNOT00000091565 2 2 2 63 9 16538282 16538300 AAGAAGCTTCCACAGACAG 57 16538891 16538909 AGTACCTGACGTTGTGTCC 59 NA DesignNoJunction Rattus norvegicus 81 Tp53 ENSRNOG00000010756 ENSRNOT00000091216 2 1 5 80 10 56194525 56197197 TACCAAGGCAACTTCATCC 57 56197243 56197263 TAATTCCAAGGCCTCATTCAG 58 NA Rattus norvegicus 81 LOC100910371 ENSRNOG00000046142 ENSRNOT00000083886,ENSRNOT00000071033 3 2 2 82 9 16818503 16818521 GATCTCGCTCAGTACTGAC 57 16817704 16818457 TATCAGAGTTGAGCACGTG 57 NA Rattus norvegicus 81 Cfhr1 ENSRNOG00000042901 ENSRNOT00000079040 2 1 2 80 13 56837130 56843507 ATGCAAAGGTATCTTTGGAGG 58 56837070 56837089 TTTAAAGGCCTCCTGTTGAG 58 NA Rattus norvegicus 81 Ispd ENSRNOG00000006199 ENSRNOT00000008312 1 1 2 80 6 56036507 56158176 TCACTCACAGGATGAGCAG 59 56158217 56158238 TTTCTTTCCTTAACCAAGGCAG 59 NA Rattus norvegicus 81 Mrps10 ENSRNOG00000022609 ENSRNOT00000040204 1 1 2 148 9 15640625 15646336 CAGATAACCACTTCTGATGAGC 59 15639804 15640521 GGCTCGTGTACTTTAATAGAAAGG 60 NA Rattus norvegicus 81 Klhl22 ENSRNOG00000001878 ENSRNOT00000068711,ENSRNOT00000091675 3 2 2 80 11 87693880 87693902 TATACACTTCTGAGCTAGAGCTG 59 87693940 87698488 TTTCTGGTATCTGAAGTTGGC 58 NA Rattus norvegicus 81 Itih4 ENSRNOG00000017381 ENSRNOT00000048344 2 1 2 81 16 6971785 6971804 CTTCATCACCAACTTCTCCA 58 6973440 6973459 TATTGCTTCTGGCTTCAGC 58 NA Rattus norvegicus 81 Apc ENSRNOG00000020423 ENSRNOT00000090264 3 1 2 89 18 27086606 27087893 ATGAGCTTGGTAGGAAGGC 60 27091191 27091210 GTAACTCTGCAATAGCCTGC 59 NA Rattus norvegicus 81 Rilpl1 ENSRNOG00000001055 ENSRNOT00000090831 3 1 2 96 12 37519725 37524809 CAAGCGACTGCTCTTTACG 59 37524869 37524887 GAGGGACACGAGTCTTCTG 60 NA Rattus norvegicus 81 Pla2g4a ENSRNOG00000002657 ENSRNOT00000090693,ENSRNOT00000003630 3 2 2 80 13 67074211 67085160 CTCCATTCAAGGAACTTCTGC 59 67074151 67074172 ACACGTAAGGATCAATCTTTGG 59 NA Rattus norvegicus 81 Sema3f ENSRNOG00000017704 ENSRNOT00000085915,ENSRNOT00000024193 3 2 2 80 8 116443729 116443748 CATGTTAGAGGAGGTGGAGG 59 116442988 116443175 TACAGTTGTTGCCTCTTGGA 59 NA Rattus norvegicus 81 Pafah2 ENSRNOG00000022288 ENSRNOT00000037097 3 1 2 81 5 152629969 152629988 TGGACCCTTATGAAGGTCAG 59 152630032 152633712 TAGTCCTCCTTCAGGTCGA 59 NA Rattus norvegicus 81 Bin1 ENSRNOG00000012852 ENSRNOT00000042287,ENSRNOT00000049898 3 2 3 115 18 25199539 25206121 AATTGCCAAGGCAGAAGAG 58 25206344 25206362 TGACATAGAAACCCACACG 58 NA Rattus norvegicus 81 Ano1 ENSRNOG00000020865 ENSRNOT00000090653 3 1 2 81 1 217789475 217789493 ACGGAAGCAGATGAGACTC 59 217786774 217787352 TCTGGGATGATCCTTGACAG 59 NA Rattus norvegicus 81 Zfyve16 ENSRNOG00000013055 ENSRNOT00000089325,ENSRNOT00000017705 3 2 2 80 2 22073910 22073928 TTGTGGTGTTCAATGGTGC 59 22070371 22073869 GAACCATTAAGCCATCTTCGAC 60 NA Rattus norvegicus 81 Skint1 ENSRNOG00000043194 ENSRNOT00000087012,ENSRNOT00000064863 2 2 2 80 5 131920215 131933400 AATACAGCAAACTCAGAGCT 57 131933442 131933461 GAGTTCTAAGTTTCCACCCA 57 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000092034,ENSRNOT00000024682 2 2 18 81 1 43637403 43697828 TACAGGGACAGACCTAGACC 60 43697872 43697890 CACAATGGAAGTGCTCCAC 59 NA Rattus norvegicus 81 Cul9 ENSRNOG00000018372 ENSRNOT00000028786 1 1 2 90 9 16754373 16754632 AAACTGGATAAGGAGGCCG 60 16754686 16754704 TACTGAGAACCTGCAGCAC 60 NA Rattus norvegicus 81 Ptbp1 ENSRNOG00000010448 ENSRNOT00000091650 3 1 3 193 7 12668224 12668247 GTATGCAGGAGTTCCCTCC 60 12666369 12667429 TCTCAGGGTTCAAGTTGCT 59 NA Rattus norvegicus 81 Cxxc5 ENSRNOG00000032878 ENSRNOT00000085120,ENSRNOT00000045795 3 2 2 81 18 28654625 28654643 GACTGGCCATCAGATTTGC 59 28654687 28655897 AAGCATCACCTTCTCCAGAG 60 NA Rattus norvegicus 81 Pqbp1 ENSRNOG00000007766 ENSRNOT00000010536,ENSRNOT00000077268 1 2 2 139 X 15348426 15451595 CAAACATCTGGAGCCAGAG 58 15451698 15451890 AAGGGAGTCCACAAGAAGG 59 NA Rattus norvegicus 81 Lyar ENSRNOG00000005374 ENSRNOT00000084093 3 1 2 88 14 77309761 77309779 TGTCCCATGGAAAGTCCTG 59 77309327 77309710 GTTGAATTTACCAGGCTCCC 59 NA Rattus norvegicus 81 AABR07062219.2 ENSRNOG00000058775 ENSRNOT00000079429,ENSRNOT00000080017,ENSRNOT00000086461,ENSRNOT00000087529 3 4 4 80 4 165310580 165310601 GGGATGAATGTAAACAGACCTG 59 165176326 165310539 GAAGGAACTTCCGTTCGTC 59 NA Rattus norvegicus 81 Sh3glb1 ENSRNOG00000012957 ENSRNOT00000084337,ENSRNOT00000017770 3 2 2 81 2 250733892 250736670 CAGCCAAATCCAAATGCCA 59 250733829 250733850 CTGGGTTGTTTATACGACTTGG 59 NA Rattus norvegicus 81 Hsp90ab1 ENSRNOG00000019834 ENSRNOT00000026920 2 1 2 85 9 17819194 17819385 CTAATGCTTCTGATGCCCT 57 17819434 17819452 AATCTTCAGCTCTTTCCCG 58 NA Rattus norvegicus 81 Fam193b ENSRNOG00000039807 ENSRNOT00000089990,ENSRNOT00000017349 2 2 2 80 17 9625116 9626019 TACTTCAAGAGGTTCTGTTTGG 58 9626060 9626078 CTTGAGGCTGAAGTTGGTC 59 NA Rattus norvegicus 81 Rgs6 ENSRNOG00000008082 ENSRNOT00000086136,ENSRNOT00000058181 1 2 2 80 6 106539141 106548951 CATAGAGATGAGCAAAGAGCC 59 106548992 106549011 ACCTGGTCCTTCAGTATCTC 58 NA Rattus norvegicus 81 Was ENSRNOG00000031058 ENSRNOT00000073289,ENSRNOT00000051439 2 2 2 80 X 15156406 15156425 GGAGCTATACTCACAGCTGG 60 15156465 15156574 AGTCCTACTTGACAGTCATCTC 59 NA Rattus norvegicus 81 Acad10 ENSRNOG00000037815 ENSRNOT00000057435 3 1 2 80 12 40447491 40448820 AGTTTATGGAACAGAAGGGTG 58 40448862 40448880 GTGAAGAAAGGAAGGCCTC 58 NA Rattus norvegicus 81 Tmub1 ENSRNOG00000013383 ENSRNOT00000061992 3 1 2 80 4 7258310 7258826 AAGAATAGCTCCTTAGCACCT 59 7258867 7258886 AAAGGACAGTCACCTCATCC 60 NA InUTR Rattus norvegicus 81 Tmub1 ENSRNOG00000013383 ENSRNOT00000088357,ENSRNOT00000061992 3 2 2 99 4 7259172 7259190 ATGACTCTGAACAGGTGGC 60 7259526 7259544 TAGATGAGTCGAACCTGCT 58 NA DesignNoJunction Rattus norvegicus 81 Nckap5l ENSRNOG00000056678 ENSRNOT00000086276,ENSRNOT00000081434 1 2 2 83 7 141092658 141093220 ACTGAACCAGAAGGACCTG 59 141092593 141092611 CTGAGCATCTGATTCTGCC 58 NA Rattus norvegicus 81 Hbs1l ENSRNOG00000014531 ENSRNOT00000019734 2 1 2 126 1 16822454 16827567 ATCTCACCATCAACAGCTG 58 16827654 16827675 GGTCGATTTCACTTAATTGGTG 58 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000026637,ENSRNOT00000026559,ENSRNOT00000042790,ENSRNOT00000044163 1 4 6 81 9 17344346 17347174 GAAAGCCCATGAAGTGGTG 59 17347219 17347237 GAAGATGTCCACCAGGGTC 60 NA Rattus norvegicus 81 Vegfa ENSRNOG00000019598 ENSRNOT00000026637 3 1 6 83 9 17350342 17351514 TTTAAATCCTGGAGCGTTCAC 59 17351559 17351577 ACATTTACACGTCTGCGGA 60 NA Rattus norvegicus 81 Nup98 ENSRNOG00000020347 ENSRNOT00000027590 2 1 2 97 1 167246471 167246490 CAAAGAAGCTGAAGACTGCC 60 167246391 167246411 TTCTCTACCTGAGGTGGGT 59 NA Rattus norvegicus 81 Nup98 ENSRNOG00000020347 ENSRNOT00000027590 3 1 2 98 1 167246472 167246491 TCAAAGAAGCTGAAGACTGC 59 167246391 167246411 TTCTCTACCTGAGGTGGGT 59 NA Rattus norvegicus 81 Scap ENSRNOG00000020853 ENSRNOT00000028295,ENSRNOT00000090238 3 2 2 80 8 118622604 118622623 TGACTTCTTCCTCCAGATGC 60 118622665 118622818 TTGTTCAGGTCTGCTAGCTC 60 NA Rattus norvegicus 81 Lbh ENSRNOG00000039902 ENSRNOT00000091904,ENSRNOT00000061284 1 2 2 80 6 24163120 24181541 CCTATCAGATCTTTCCCGACC 60 24181583 24181601 GTTCCACCACTATGGAGGG 60 NA Rattus norvegicus 81 AABR07065792.1 ENSRNOG00000042197 ENSRNOT00000067336 3 1 1 61 6 141488230 141488249 AAATGCAGCTGGATCATCCT 60 141487841 141487859 TGGACTTCTGAGTTGACCC 59 NA DesignNoJunction Rattus norvegicus 81 Zfp317 ENSRNOG00000006684 ENSRNOT00000034254,ENSRNOT00000078593 1 2 2 82 8 19888890 19890688 GTCCTTCTCCAGATTGGGA 58 19890734 19890752 ATCAGATGCTTCCTTCCCA 58 NA Rattus norvegicus 81 Ncam2 ENSRNOG00000002126 ENSRNOT00000078127,ENSRNOT00000002895,ENSRNOT00000082417 2 3 3 80 11 20567349 20570172 AAGATGATACTTGAGATTGCCC 58 20570213 20570231 CGTGCCTATACGGTTAGTC 58 NA Rattus norvegicus 81 Gas7 ENSRNOG00000049361 ENSRNOT00000072855 1 1 3 91 10 54155880 54156665 CAGCAATTCAGAAGCCTGG 59 54156720 54156738 AGACAAGTAGCTGTGCCAG 60 NA Rattus norvegicus 81 Gas7 ENSRNOG00000049361 ENSRNOT00000072855 2 1 3 92 10 54155880 54156665 CAGCAATTCAGAAGCCTGG 59 54156721 54156739 GAGACAAGTAGCTGTGCCA 60 NA Rattus norvegicus 81 Mef2a ENSRNOG00000047756 ENSRNOT00000070864 3 1 4 82 1 128267097 128267115 CCTTCTCAAGTACACCGAG 57 128243012 128267054 GGCCTTTCTTTCTTAAAGTCTC 57 NA Rattus norvegicus 81 Krt25 ENSRNOG00000011196 ENSRNOT00000015150 1 1 2 86 10 87227651 87227753 TGGTTCCAAGAGAAGAGCG 60 87227583 87227601 TTCCGTCAGCTCATTCCTG 60 NA Rattus norvegicus 81 Trim37 ENSRNOG00000006248 ENSRNOT00000090921,ENSRNOT00000091163,ENSRNOT00000008298 2 3 3 80 10 74457424 74467244 GTAGAACATCAGTTGCGGTC 59 74467284 74467305 AACTTGCTGGAACATCATTAGG 59 NA Rattus norvegicus 81 Trim37 ENSRNOG00000006248 ENSRNOT00000090921,ENSRNOT00000091163,ENSRNOT00000008298 3 3 3 80 10 74467290 74467309 GATGTTCCAGCAAGTTCACC 60 74467349 74471254 ACCAATTCACTGGTAAAGTCTG 59 NA Rattus norvegicus 81 Chat ENSRNOG00000025012 ENSRNOT00000034283 2 1 2 103 16 8578292 8578311 GAGCCTTGTTGACATGAGAG 59 8578206 8578226 AAGATTGCTTGGCTTGTGG 59 NA Rattus norvegicus 81 Rbm3 ENSRNOG00000005387 ENSRNOT00000007367,ENSRNOT00000087033 2 2 2 80 X 15099611 15099631 CAACTTCAACACTGATGAGCA 59 15099673 15099968 TCCTTGACAACAACCACCT 59 NA Rattus norvegicus 81 Rbm3 ENSRNOG00000005387 ENSRNOT00000007367 2 1 2 115 X 15100049 15100706 TGAATGGAGAGTCCCTGGA 60 15100785 15100803 TCTAGAGTAGCTGCGACCA 60 NA Rattus norvegicus 81 Adgrf5 ENSRNOG00000011154 ENSRNOT00000015223 3 1 2 81 9 20114209 20114227 ACACATGTGAGTTCGTCAG 58 20111972 20114164 GTTAGGTTGGCTACAGAGG 57 NA Rattus norvegicus 81 Podxl ENSRNOG00000012495 ENSRNOT00000077406,ENSRNOT00000016991 1 2 3 87 4 58839566 58892953 CCAGGATAATGGAAATAAGACTGAC 60 58839503 58839521 ATTGCTTGGCTGGTTTGTC 59 NA Rattus norvegicus 81 Sv2b ENSRNOG00000011160 ENSRNOT00000015084 2 1 3 81 1 136691158 136697363 GAAGGTGTTCACGGTTTCC 59 136691095 136691113 CCAAGTCCCTGTTGAACTC 58 NA Rattus norvegicus 81 Btaf1 ENSRNOG00000017938 ENSRNOT00000081786 1 1 2 87 1 255564512 255582142 GTCTCCAGACTCGATCGTC 59 255582193 255582211 CTTCTCCAAGTTGCTGTGC 60 NA Rattus norvegicus 81 Zfp955a ENSRNOG00000048577 ENSRNOT00000082664 3 1 2 88 7 15785462 15785480 CTCTGCTGGATTCCTACCA 59 15785530 15785767 TTCCTCTGTCTTTCCTATGGA 58 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000075317 1 1 6 85 12 41302675 41305880 CCTATGATGTCCTGGAGGG 59 41302580 41302598 CTTCCTGATGAGACTGGCA 59 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000083500 1 1 7 80 19 15189762 15334677 TTGCTAGGAATAGGAACCCA 58 15334718 15334738 CAATCTGCAAATACCCTTCCT 58 NA Rattus norvegicus 81 Swt1 ENSRNOG00000032258 ENSRNOT00000086460 2 1 2 80 13 68771828 68771943 TGTGGATTCCAAGTCTACAC 57 68771767 68771786 CCATTTGTTTCTTGGTGCTC 58 NA Rattus norvegicus 81 Fbxo30 ENSRNOG00000014852 ENSRNOT00000019918 2 1 1 60 1 5381537 5381557 TCCAGAAGGAAATTCATCCTG 58 5387064 5387083 AAATGCAGTACTGAATCGCC 59 NA DesignNoJunction Rattus norvegicus 81 RT1-Db2 ENSRNOG00000030431 ENSRNOT00000083085 3 1 2 85 20 4120113 4124691 TCTGAGAGGATCAGTGTCTC 58 4124739 4124757 TGTGACATTCACTCCTGCT 59 NA Rattus norvegicus 81 RT1-Db2 ENSRNOG00000030431 ENSRNOT00000042571 2 1 2 88 20 4120113 4124687 TCTGAGAGCAGGATCAGTG 59 4124739 4124757 TGTGACATTCACTCCTGCT 59 NA Rattus norvegicus 81 Vcan ENSRNOG00000029212 ENSRNOT00000088313,ENSRNOT00000045532 2 2 4 80 2 18522665 18525806 TTTATCTACCAGGACCTGATCTC 59 18522607 18522630 CATAGGAAGTCTCAGTAGGATAGC 60 NA Rattus norvegicus 81 Rab6a ENSRNOG00000018176 ENSRNOT00000087534 3 1 2 125 1 165646264 165646285 GAAAGACATCCTTGATCACCAG 59 165647882 165649293 ATAATTGCAATCGCACGGT 59 NA Rattus norvegicus 81 Atp6v0a2 ENSRNOG00000052704 ENSRNOT00000087698 1 1 3 80 12 37396612 37398124 TCCGAGACCTTATTCAGGC 59 37391633 37391655 GAATATCAGCTCTGGTGATTTCC 59 NA Rattus norvegicus 81 Grik1 ENSRNOG00000001575 ENSRNOT00000051060,ENSRNOT00000042581 3 2 5 118 11 27812387 27831347 AATGACGTTGAGCAGTGTC 59 27812287 27812307 CTTGTGAAAGAAGATTTGCCC 58 NA Rattus norvegicus 81 Adamts20 ENSRNOG00000033397 ENSRNOT00000088223 3 1 3 89 7 135524222 135524241 CATTCGTAAGAGTGACCGTG 59 135522979 135524172 TCTGGGTTCACTCTTTCAGTC 60 NA Rattus norvegicus 81 Plcb4 ENSRNOG00000033119 ENSRNOT00000042853 3 1 3 90 3 128914905 128919218 GGAAATAGAAAGCGCAGCT 59 128919271 128919290 CTTGTGACTGAAGTCATCGG 59 NA Rattus norvegicus 81 Tnfsf13b ENSRNOG00000014464 ENSRNOT00000089650 3 1 2 107 16 85280743 85305258 GGAGGAAACAGGAACTTACAC 59 85280656 85280675 AAATAGCCTGTTTGCCTCAC 59 NA Rattus norvegicus 81 Spon1 ENSRNOG00000058003 ENSRNOT00000092099,ENSRNOT00000087612 3 2 2 80 1 178759842 178767267 TGTGAACAGGATCCCACAC 60 178767311 178767329 TCTGTACTTGGCAGTTCCG 60 NA Rattus norvegicus 81 Pphln1 ENSRNOG00000022778 ENSRNOT00000090908,ENSRNOT00000055688 2 2 2 80 7 134619427 134619445 TTGCCGAGTATGTAACGAG 57 134619487 134624162 TAGCCAAATTCATCTCCTCTG 58 NA Rattus norvegicus 81 Tbx3 ENSRNOG00000008706 ENSRNOT00000084018,ENSRNOT00000011552 3 2 2 83 12 42488722 42488740 CTTACAGTACCTTCCGCAC 58 42486589 42488678 ACTGGGTTATCTTGTCATTCTG 58 NA Rattus norvegicus 81 Tbx3 ENSRNOG00000008706 ENSRNOT00000011552 2 1 2 80 12 42490059 42490077 ATGGATGTCCAAAGTCGTC 58 42489111 42490015 AAGGCCAAAGTAAATCCGT 57 NA Rattus norvegicus 81 F2rl1 ENSRNOG00000018003 ENSRNOT00000061580 1 1 1 76 2 25235139 25235157 GAGGTATCACCCTTCTGGC 60 25225108 25225127 TCTCCCTTTACTGTTGGGTC 59 NA DesignNoJunction Rattus norvegicus 81 Mcm5 ENSRNOG00000014336 ENSRNOT00000084271,ENSRNOT00000064731 1 2 2 80 19 14552762 14552780 TCATCATGGAAGGTGGAGC 60 14552824 14553133 CATCTTCCCGCATCTTGTC 59 NA Rattus norvegicus 81 Ralgps2 ENSRNOG00000004736 ENSRNOT00000077169 3 1 2 80 13 74436043 74436062 GGGCTGTTACTATTCAAGGC 59 74433810 74436001 TTGTCCAAGATGCTACTGTG 58 NA Rattus norvegicus 81 Sox6 ENSRNOG00000020514 ENSRNOT00000079072 1 1 2 80 1 185863255 185863274 CTGAAGTTCTGGCTGATGTG 59 185863315 185878839 GCTTGGAAGACATTCTTACGA 59 NA Rattus norvegicus 81 Csnk2b ENSRNOG00000000847 ENSRNOT00000001123,ENSRNOT00000076528 3 2 3 81 20 5109838 5109856 TCACATGCTCTTCATGGTG 58 5108904 5109793 CTTGAAACCGTAGAGCCTG 58 NA Rattus norvegicus 81 Rasal2 ENSRNOG00000004917 ENSRNOT00000089062 3 1 2 80 13 74933867 74933887 TCATGGGAGAGGAAATACTGC 60 74923388 74933826 TCCATCCACAGGTATCTCCT 60 NA Rattus norvegicus 81 Tram1 ENSRNOG00000007892 ENSRNOT00000045373 3 1 2 80 5 5312638 5316370 TCTACCTCCAGGAGAAAGGT 59 5316412 5316431 GTTCATCACGTTCATCACGT 59 NA Rattus norvegicus 81 Mta3 ENSRNOG00000004685 ENSRNOT00000061921 2 1 2 83 6 7017279 7031683 TCTAGATGCCTCCAAGATTCG 60 7031726 7031746 GTTTCTAGTTGCAGGCTTCTG 60 NA Rattus norvegicus 81 Sbf2 ENSRNOG00000009812 ENSRNOT00000077125 2 1 2 80 1 175154504 175171311 TTCTATAGGACAGTGAGCTTACAC 60 175154447 175154466 ATAAACGGCAGACTCTAGGG 59 NA Rattus norvegicus 81 Pex12 ENSRNOG00000009718 ENSRNOT00000013233,ENSRNOT00000082684 3 2 2 80 10 70515858 70515876 TTTGAGGTGGTAGCACAGG 60 70515534 70515816 TGATTCTGCAAGAACCTTGAC 59 NA Rattus norvegicus 81 Map3k7cl ENSRNOG00000001584 ENSRNOT00000002158,ENSRNOT00000084580 3 2 2 80 11 27237364 27237382 AACAGCACTGCCAAATAGC 59 27237425 27250682 TGAGCTCCTTCTTCCTTTCC 60 NA Rattus norvegicus 81 Pard3 ENSRNOG00000032437 ENSRNOT00000078559 2 1 2 80 19 60351937 60358397 GCAGGATAATGGGTAAATGCC 60 60358436 60358457 GCCTGTCATCTTCAATCATGAC 60 NA Rattus norvegicus 81 Sat2 ENSRNOG00000011714 ENSRNOT00000079617,ENSRNOT00000015769 1 2 2 80 10 56228459 56228665 AAGATCAGTGAAGAAGCCCT 59 56228707 56228726 TGGAATAATCTCTGCCACCA 59 NA Rattus norvegicus 81 Stat2 ENSRNOG00000031081 ENSRNOT00000049536,ENSRNOT00000088201 2 2 2 80 7 2705964 2705982 CATTGAATCAGCTGTTGCC 58 2706024 2706241 TTCTGAAGATTTCCATCTCCC 58 NA Rattus norvegicus 81 Flot2 ENSRNOG00000009681 ENSRNOT00000078757,ENSRNOT00000014118 1 2 4 80 10 65312323 65312344 GTGTCGCTGTGAGAATATTGAG 60 65309840 65312283 TCCGTCATGATCTTCACCTG 60 NA Rattus norvegicus 81 Cand2 ENSRNOG00000010473 ENSRNOT00000014207 1 1 3 189 4 147692044 147692069 CTCCTCCTAGGTTCATGGC 59 147692772 147692790 TGGTACTCCTTCACCTTGC 59 NA Rattus norvegicus 81 Lipc ENSRNOG00000060338 ENSRNOT00000091858 2 1 3 80 8 77288631 77288652 CTATGTCTGAACTGCAAGAAGG 59 77288566 77288589 GAAGAGTGTCTTTGCGTGG 59 NA Rattus norvegicus 81 Dtx3 ENSRNOG00000005129 ENSRNOT00000090057,ENSRNOT00000006815 3 2 2 103 7 70479898 70480271 CGGATCAAATGTCGTTCGTC 60 70479814 70479832 CTCCTTGCTCAGGAAGTCC 60 NA InUTR Rattus norvegicus 81 L1cam ENSRNOG00000061230 ENSRNOT00000080945 1 1 2 80 X 156921390 156921636 CAACTCTCCCATTGAGAAATATGAC 60 156921674 156921692 ACCTTGCCTAGACTGAACC 59 NA Rattus norvegicus 81 Rnf4 ENSRNOG00000013930 ENSRNOT00000019555 2 1 2 84 14 81667701 81667720 GATGAAATCGTGGACCTCAC 59 81662111 81667657 CTTCAACAATCACAACAGAGTC 58 NA Rattus norvegicus 81 Tnfsf13 ENSRNOG00000014171 ENSRNOT00000090762,ENSRNOT00000056903 1 2 2 80 10 56289070 56289088 CAGTACTCACCCAGAAGCA 59 56288723 56288891 TGTCAGAGTCCTTGGAGGT 60 NA Rattus norvegicus 81 Epas1 ENSRNOG00000021318 ENSRNOT00000034991 1 1 3 88 6 10348324 10349065 AGAAGCATGAGAGCAGCTC 60 10349116 10349135 ATAGAAGACCTCCGTCTCCT 59 NA Rattus norvegicus 81 Ehmt1 ENSRNOG00000007242 ENSRNOT00000086843 1 1 2 80 3 2032372 2032390 TTCAGAGGAGGAACAGGAG 58 2030851 2032331 CTAGATTCAGAACTCAGGTCAG 58 NA Rattus norvegicus 81 Zfp472 ENSRNOG00000004572 ENSRNOT00000084634,ENSRNOT00000006044 2 2 2 81 7 15247727 15248595 AAGGAAGCCTGAGAACTCTG 60 15248639 15248657 CTCTGTCGTTGCGTTTCTC 59 NA Rattus norvegicus 81 Slc38a4 ENSRNOG00000006653 ENSRNOT00000085620,ENSRNOT00000009187 2 2 2 80 7 138474243 138476667 AGAACATTGGAGCCATGTC 58 138474181 138474200 CAAGTCCCATGAACACTCTG 59 NA Rattus norvegicus 81 Zfp266 ENSRNOG00000034037 ENSRNOT00000042903,ENSRNOT00000085060 3 2 2 80 8 21518762 21518782 TCATTCCTAGTCTGACTCCCT 60 21517639 21518720 GCAGTTCCAATTGCTGAGG 60 NA Rattus norvegicus 81 Ubtd2 ENSRNOG00000004137 ENSRNOT00000005486 3 1 1 79 10 17375110 17375130 GCAAACATAACACTACCACAC 58 17389945 17389963 CAATAGACTGGCAGCTGGT 60 NA DesignNoJunction Rattus norvegicus 81 Cacna1c ENSRNOG00000007090 ENSRNOT00000051846,ENSRNOT00000052017 1 2 3 80 4 150681950 150681970 CATGGAATACATTTGACGCCT 59 150674643 150681909 TATGTTCAGCTGGGTGTACC 60 NA Rattus norvegicus 81 Thumpd2 ENSRNOG00000008291 ENSRNOT00000011000 2 1 3 82 6 3743696 3748789 AAATGGAAAGAGTGCTGCAC 60 3743633 3743651 TCCACAGTCTGTAAGACGC 60 NA Rattus norvegicus 81 Fbxw8 ENSRNOG00000001126 ENSRNOT00000079510,ENSRNOT00000064756 2 2 3 80 12 44087266 44087285 CTGGAATGCAGCCATATGTC 59 44087326 44103308 CGTTAAGAATTCCATCCTCGT 58 NA Rattus norvegicus 81 Nell2 ENSRNOG00000006235 ENSRNOT00000008985 2 1 2 80 7 136791553 136852577 CCTCTTCCAAGATTCTCCCA 59 136791492 136791512 TGTTTATTCCTCAGCTTCTGG 58 NA Rattus norvegicus 81 Ube3d ENSRNOG00000010802 ENSRNOT00000014600,ENSRNOT00000080195 3 2 2 80 8 94069340 94070366 GGTGTATATCTTGCTCTGGGT 59 94069280 94069299 AACTTCCTGATACAACCGGA 59 NA Rattus norvegicus 81 Xpr1 ENSRNOG00000000042 ENSRNOT00000000049 3 1 2 81 13 73027913 73056642 AAGCAGTACATCCAGTATGAGG 60 72984028 73027874 CATCTGTAACTTCCACAGAAGG 59 NA Rattus norvegicus 81 Slc2a9 ENSRNOG00000005302 ENSRNOT00000042200 1 1 2 80 14 77079502 77081913 CGAGGAGGACAAAGAACTG 58 77081957 77081975 ACCCATAGAGGAAGGAGGA 59 NA Rattus norvegicus 81 Cntrob ENSRNOG00000008270 ENSRNOT00000073296 2 1 2 118 10 55913340 55913358 CAGATGGAGTCAGAGCTGG 60 55913201 55913258 CAACACTTGCTGTGATGGT 59 NA Rattus norvegicus 81 Bloc1s2 ENSRNOG00000012684 ENSRNOT00000017006 1 1 2 80 1 263920529 263920547 CATCAATGAACTCTGCCGG 59 263917791 263920485 TAGTCTTCACTGGTGGCTG 59 NA Rattus norvegicus 81 Mlec ENSRNOG00000021725 ENSRNOT00000081343,ENSRNOT00000038395 1 2 3 80 12 47226877 47228598 GACAGTAGACGATGTGCCA 60 47228638 47228660 TCATATTCTTCCTCTTCCTCCTC 59 NA Rattus norvegicus 81 LOC498369 ENSRNOG00000020730 ENSRNOT00000028149 1 1 2 98 10 89479850 89479868 CTGGAGGACTGGTGAAAGG 60 89479930 89482431 CTTCAGAAATGACGGGCTG 59 NA Rattus norvegicus 81 Neurl2 ENSRNOG00000015797 ENSRNOT00000021216 2 1 1 61 3 161297817 161297835 TGGTCCAACTGGAGTATGG 59 161296509 161296527 CCTCTGGATCACAAGACGG 60 NA DesignNoJunction Rattus norvegicus 81 Mrpl30 ENSRNOG00000049330 ENSRNOT00000083245,ENSRNOT00000075242,ENSRNOT00000088544 2 3 3 85 9 44568672 44570706 CCAGATAAAGTATTTCAGCCTAGAC 59 44570746 44570767 GTAACAATGTGCAGTTTATGGG 58 NA Rattus norvegicus 81 Acoxl ENSRNOG00000016179 ENSRNOT00000083627 2 1 2 80 3 120675778 120723878 GGCTTTGCTAATGAAGTTGC 58 120723917 120723939 GGAATATTGAAGGCAGAGATCAC 59 NA Rattus norvegicus 81 Ilf3 ENSRNOG00000022741 ENSRNOT00000079230,ENSRNOT00000085320,ENSRNOT00000009354 1 3 3 80 8 22427974 22427993 TCCTTGACCATCCATCTGAC 59 22428034 22429338 GTTGACTGATAGCGTTTCTCC 59 NA Rattus norvegicus 81 Hdlbp ENSRNOG00000031479 ENSRNOT00000085448,ENSRNOT00000051155 1 2 3 80 9 100574812 100575899 TGCCAAAGGTTCACATTGAG 59 100574751 100574771 GGGCTACATTCACATCTTCTG 59 NA Rattus norvegicus 81 Mdm1 ENSRNOG00000007286 ENSRNOT00000091885 2 1 3 81 7 61179486 61179505 CAGAGCAAAGAGAAGATGCT 58 61179546 61179569 CAGAATGAGATCGAGTTCTTGG 59 NA Rattus norvegicus 81 Aff3 ENSRNOG00000018830 ENSRNOT00000042227 3 1 2 133 9 45205608 45206412 CGTGTCTATGAACCAGATAGGA 59 45204260 45205516 CCCTTGTTAGTCTTGTAGGGT 59 NA Rattus norvegicus 81 Tacc2 ENSRNOG00000020457 ENSRNOT00000054937,ENSRNOT00000047161 3 2 4 168 1 201226086 201238798 ACATCTGACAGTCCAGAGC 59 201238930 201281634 CTCAGAGTCGGAACTCCTG 59 NA Rattus norvegicus 81 Tcf12 ENSRNOG00000057754 ENSRNOT00000081185 1 1 3 80 8 78421174 78421197 GAACACCATACTACTCATTCTCTG 59 78415911 78421140 CTTGTAAAGGATCTAGAGCTACAG 58 NA Rattus norvegicus 81 Map7d3 ENSRNOG00000027831 ENSRNOT00000030445 3 1 2 80 X 159190140 159190160 ATCTAGAAGCACCTCTTCAGG 59 159189326 159190099 CCATTTCTGGGTTCTGAGGT 60 NA Rattus norvegicus 81 Tnnt3 ENSRNOG00000020332 ENSRNOT00000080339 1 1 5 80 1 215680136 215680157 ATACCTTGTACCAACTGGAGAC 60 215680192 215681274 GGACAGTCATGATATCGTATTTCTG 60 NA Rattus norvegicus 81 Tnnt3 ENSRNOG00000020332 ENSRNOT00000066135,ENSRNOT00000080339 2 2 5 82 1 215671968 215673197 AAGAAGTCCAGGAGGAAGC 59 215676246 215678560 GATCTTAGGAGCAGTAAGTTTGG 59 NA Rattus norvegicus 81 Slc25a12 ENSRNOG00000022922 ENSRNOT00000036728 2 1 2 80 3 57957253 57957272 GTACAATGATCCGAACAGCA 58 57946315 57957210 GAGATCAACCCATCCTTGG 58 NA Rattus norvegicus 81 Ano6 ENSRNOG00000006995 ENSRNOT00000068742 2 1 2 80 7 137142260 137142280 CAGATGATGACTAGGAACGTC 58 137142321 137185972 AGGAACATCACCAATGTCTC 58 NA Rattus norvegicus 81 AABR07054405.1 ENSRNOG00000057817 ENSRNOT00000089719,ENSRNOT00000080543 3 2 4 83 3 152600423 152600441 CAGGAAAGATGCACAGACC 59 152600488 152600997 GGATTTGCTCCCAGTAGCT 60 NA Rattus norvegicus 81 Oxr1 ENSRNOG00000056487 ENSRNOT00000081948 1 1 5 84 7 80555210 80721373 CTATACCATTGATACTGGCCA 57 80721417 80721437 AATAGTTCCCTTAGGCTTCTG 57 NA Rattus norvegicus 81 Acacb ENSRNOG00000000658 ENSRNOT00000067975 1 1 4 82 12 48167554 48168612 CTGATCCAGAGGCAAGAGG 60 48167351 48167371 TCCACGTTCAGATATCTCCTC 59 NA Rattus norvegicus 81 Mgst3 ENSRNOG00000004245 ENSRNOT00000005719 1 1 1 80 13 85606393 85606412 GTCATGTACAGCACAGATCC 59 85604627 85606352 GTACACCTCCAATGTGTTCTG 59 NA Rattus norvegicus 81 AABR07052831.1 ENSRNOG00000046674 ENSRNOT00000071319 1 1 1 80 3 77799794 77799813 GCAGAAGTGATTGTCCTGTC 59 77791812 77799756 GATGGAAGAATAGTAGTGAAGTGG 59 NA Rattus norvegicus 81 Ddx39a ENSRNOG00000004373 ENSRNOT00000045974,ENSRNOT00000090312 2 2 2 80 19 24853413 24853431 TGTATGATGTTCAGCGCCA 60 24853473 24853869 AAACACCTCCATAGGATCCTG 59 NA Rattus norvegicus 81 Zzef1 ENSRNOG00000024535 ENSRNOT00000036278 1 1 1 80 10 59398210 59400157 ACATCAGTCAGCTCTATGTCC 59 59400199 59400217 CCCTCAGACCATGAATCCT 59 NA Rattus norvegicus 81 Zdhhc2 ENSRNOG00000022686 ENSRNOT00000036092 1 1 1 84 16 54976525 55001983 TGTGCATAGTGTCCATGGA 59 54975309 54975327 GACCAGACAAACATTGCGA 59 NA Rattus norvegicus 81 Celsr2 ENSRNOG00000020058 ENSRNOT00000027263 2 1 1 80 2 211185866 211185886 AATGGAGATGCTCTAACTCGG 60 211185711 211185825 CTTGAGGATGCCTTTGTGAG 59 NA Rattus norvegicus 81 Wdr61 ENSRNOG00000012803 ENSRNOT00000017239,ENSRNOT00000090439 2 2 2 80 8 59298350 59299801 TCACTTTGTTTCCAGTTCATCC 59 59298291 59298312 TCAAAGAAGGTGTGAATACAGG 58 NA Rattus norvegicus 81 Olr191-ps ENSRNOG00000017362 ENSRNOT00000023315 1 1 1 80 1 169973074 169973093 CCATGTACTATCTGCTTGCC 59 169971950 169973031 AGATAAGCAGGACCTTGGG 59 NA Rattus norvegicus 81 Olr191-ps ENSRNOG00000017362 ENSRNOT00000023315 2 1 1 81 1 169973073 169973092 CATGTACTATCTGCTTGCCA 58 169971948 169973030 GAAGATAAGCAGGACCTTGG 58 NA Rattus norvegicus 81 Tsr2 ENSRNOG00000002556 ENSRNOT00000072753,ENSRNOT00000003540 1 2 2 80 X 20227712 20227732 TTAAGACGGCCAAAGAAACTG 59 20227460 20227673 CATCATTAGTAGCTGTCACCTC 59 NA Rattus norvegicus 81 Pou2af1 ENSRNOG00000011500 ENSRNOT00000066848 2 1 1 97 8 55623430 55623448 ATACCAGTGTTGGGACAGC 60 55624463 55624481 CATGTCAAGGCAGGAAGGA 60 NA DesignNoJunction Rattus norvegicus 81 Krt34 ENSRNOG00000051302 ENSRNOT00000076980,ENSRNOT00000018048 2 2 3 82 10 87953596 87953614 TAAGTCTGAGAACGCCAGG 59 87952706 87953550 CAGTCTGGTACTTGGTCCT 58 NA Rattus norvegicus 81 Rims1 ENSRNOG00000011000 ENSRNOT00000083915 3 1 5 98 9 28667073 28732719 GCGATCGAACAATGAAAGGT 59 28664182 28664200 CTTCCAAAGAACCACGCTC 59 NA Rattus norvegicus 81 Atp2a3 ENSRNOG00000017912 ENSRNOT00000065181 2 1 3 80 10 59556436 59556454 TCAGATGTCTCTGCCTGTC 59 59556497 59556905 GTCTCAAGAACACCATCCAC 59 NA Rattus norvegicus 81 Ddah2 ENSRNOG00000000842 ENSRNOT00000001118,ENSRNOT00000083353,ENSRNOT00000088251 1 3 3 119 20 5050803 5050821 CTCCTGAGGAATCACTGCC 60 5050904 5051058 GGACTCCATCAACCTCAGG 60 NA Rattus norvegicus 81 Pkhd1l1 ENSRNOG00000004398 ENSRNOT00000057146 2 1 2 99 7 83386864 83386882 CTGAGCTCAAATGGAAGGA 57 83389768 83396202 CTGGGAAACTCAAATCATCAG 57 NA Rattus norvegicus 81 Leprotl1 ENSRNOG00000012601 ENSRNOT00000084858,ENSRNOT00000067231 3 2 2 80 16 61765482 61768143 CCAATATACAACCAATACTGGCC 60 61768182 61768201 TCTTCTGGCTATGCAGTACG 60 NA Rattus norvegicus 81 Wdr48 ENSRNOG00000016942 ENSRNOT00000082356 3 1 2 154 8 128577500 128585821 CGGGTTTCCTATGTAATTCGAG 59 128585935 128587752 TATGGATCTTGCTTGTGCTG 58 NA Rattus norvegicus 81 Cc2d1a ENSRNOG00000006747 ENSRNOT00000045180,ENSRNOT00000009806 2 2 2 80 19 25247895 25247999 TAGAAAGGAAGATCCTGGCC 59 25247834 25247853 GTACTACGTCCTGGTACTGC 60 NA Rattus norvegicus 81 Snph ENSRNOG00000009588 ENSRNOT00000091811,ENSRNOT00000012727 2 2 2 81 3 147109080 147109099 GCAGAAGGAGGTTTGTATCC 58 147106443 147109036 GATCTCTGTGTCCCGATCC 59 NA Rattus norvegicus 81 Vps25 ENSRNOG00000051179 ENSRNOT00000043754 2 1 5 82 10 89177764 89179530 GGAGGAAGAGTTCCATGGG 60 89179575 89179594 TAATCTCAGCCTTGTGCTCC 60 NA Rattus norvegicus 81 Mmadhc ENSRNOG00000004740 ENSRNOT00000066058,ENSRNOT00000083776 1 2 2 80 3 35791328 35791348 ACTGAACATGACATGACTGTC 58 35784857 35791289 AGCACCATTAATGAACTTCTCC 59 NA Rattus norvegicus 81 Aif1 ENSRNOG00000000853 ENSRNOT00000076979 1 1 3 80 20 5162791 5162916 ATCAACAAGCACTTCCTCGA 60 5162730 5162748 CTCACTCTTGAAGGCCTCC 60 NA Rattus norvegicus 81 Chek2 ENSRNOG00000037509 ENSRNOT00000085591,ENSRNOT00000056800 1 2 2 80 12 51870028 51876561 ATGGATTCTCGAATCTAGACTG 57 51869969 51869989 GTCCATCGAAGCAATATTCAC 58 NA Rattus norvegicus 81 Nlrp4 ENSRNOG00000021996 ENSRNOT00000046152,ENSRNOT00000078556 3 2 2 80 1 71690145 71690580 ACCCTTAAAGTACTCGTGGTC 60 71690085 71690105 ACGTTGGTTCTGAATCAACTC 59 NA Rattus norvegicus 81 Hps4 ENSRNOG00000000661 ENSRNOT00000000824 3 1 2 83 12 50288802 50292759 TTGAGGAGGTGTACCACAG 59 50288737 50288755 TAGTCTCATCTCTGGGCAG 58 NA Rattus norvegicus 81 Ptpn9 ENSRNOG00000017600 ENSRNOT00000023831,ENSRNOT00000091128 2 2 2 80 8 61703044 61703062 CATTGTGAAGCTGAAGCCT 59 61703104 61703647 TCTCGAACATTCAAGATGGTG 59 NA Rattus norvegicus 81 Rpl11 ENSRNOG00000026260 ENSRNOT00000079823,ENSRNOT00000030043 3 2 3 94 5 154391198 154391216 GACAAGAAGCGCAGAACAG 60 154390864 154391142 ATGATGCCATCATACTTCTGC 59 NA Rattus norvegicus 81 Apoc1 ENSRNOG00000018426 ENSRNOT00000046169,ENSRNOT00000091647 2 2 2 138 1 80606779 80609217 TGATCAAGACTCGGAACTGG 60 80606660 80606678 ATTTGAAGAGGGACCTGGC 60 NA InUTR Rattus norvegicus 81 Cadm1 ENSRNOG00000018778 ENSRNOT00000052392 2 1 2 80 8 52158192 52168552 TACCATCATCACAGACACCA 59 52175836 52175854 AGTTCTTCTGCGGAATTGG 58 NA Rattus norvegicus 81 Slc5a11 ENSRNOG00000013407 ENSRNOT00000090172 2 1 2 104 1 193200985 193201003 GAATACCTAAGGCGACGCT 60 193201071 193202400 TGCATACATGTCCACCGAG 60 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000058727,ENSRNOT00000081522 2 2 7 80 16 64036978 64043376 GCTTCTACAAGCATCTTGGG 59 64048171 64048190 AGATGCCAGTAATTGTCAGC 58 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000058727,ENSRNOT00000081522 1 2 7 80 16 64036976 64043375 CAGCTTCTACAAGCATCTTGG 59 64048169 64048188 ATGCCAGTAATTGTCAGCAC 59 NA Rattus norvegicus 81 Nrg1 ENSRNOG00000010392 ENSRNOT00000014147,ENSRNOT00000038549 1 2 7 104 16 64025208 64025226 TGAAGGACCTGTCAAACCC 60 64036977 64048151 CCTCCGCTTTGTAGAAGCT 60 NA Rattus norvegicus 81 Svep1 ENSRNOG00000033110 ENSRNOT00000047200 1 1 2 84 5 75144819 75146024 GTGAACCACCATCTACGTG 58 75144751 75144770 CAATCGTAGTCTGTCCAAGG 58 NA Rattus norvegicus 81 Bves ENSRNOG00000043199 ENSRNOT00000066167 2 1 2 80 20 50440117 50444186 TCTATAGGATGTACCCTCTACG 58 50444232 50444250 CAAGAACACCGAGTTCCAG 59 NA Rattus norvegicus 81 Gfi1 ENSRNOG00000002042 ENSRNOT00000002807 2 1 1 92 14 3064746 3064767 GAAGTCAGACATGAAGAAACAC 58 3067157 3067175 TTGGAGCTCTGACTGAAGG 59 NA DesignNoJunction Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000080174 1 1 5 90 20 4806712 4806730 ATGACATGCCAGAGGACTC 59 4806536 4806555 TGACACAAATGTGAGGCCA 60 NA Rattus norvegicus 81 Ddx39b ENSRNOG00000000841 ENSRNOT00000001115,ENSRNOT00000080174 1 2 5 80 20 4810664 4810684 GTCATGATGTTCAGTGCTACC 59 4808323 4810625 GAAGATCTCCATAGGATCTTGC 58 NA Rattus norvegicus 81 Morc2 ENSRNOG00000019624 ENSRNOT00000078980 1 1 2 80 14 83897137 83900081 GTTGATAATGCAAGAGATGCTG 58 83907864 83907884 CATAAATCCTCCTCGAAGGTC 58 NA Rattus norvegicus 81 Cyp2e1 ENSRNOG00000012458 ENSRNOT00000078080,ENSRNOT00000016883 3 2 2 80 1 213520407 213520425 TTGTCCCTTCCAACCTACC 59 213520469 213520984 TCACAACTGTACCCTTGGG 59 NA Rattus norvegicus 81 Prkca ENSRNOG00000003491 ENSRNOT00000055073 2 1 2 80 10 96213893 96213914 CATATGGAAAGTCTGTGGACTG 59 96204363 96213853 GGTGTTTGGTCATAAGCTGC 60 NA Rattus norvegicus 81 Cabp1 ENSRNOG00000001173 ENSRNOT00000001551 1 1 3 80 12 47185984 47203596 CTTCGGTCAGGATAGATCGT 59 47204372 47204393 TCTTTGTCCTTGTCAAATTCCC 59 NA Rattus norvegicus 81 Fgfr3 ENSRNOG00000016818 ENSRNOT00000023144 2 1 2 80 14 82277225 82279001 TACGTCACTGTACTCAAGACTG 60 82277166 82277185 AAAGGTGACATTGTGCAAGG 59 NA Rattus norvegicus 81 Vars ENSRNOG00000000867 ENSRNOT00000001160 1 1 2 80 20 5002728 5002746 GTCATTTACCGCAGTACCC 58 5002788 5002918 TTTCTTATCCACCTCGATGTC 58 NA Rattus norvegicus 81 Klhl38 ENSRNOG00000007896 ENSRNOT00000079961,ENSRNOT00000010484 2 2 2 80 7 98194921 98194939 AGTAAAGGACCAAAGGCTC 57 98189984 98194879 ATGTGGTAAACCTGGATAAGG 58 NA Rattus norvegicus 81 Acp5 ENSRNOG00000046261 ENSRNOT00000075237,ENSRNOT00000092200 1 2 2 80 8 23143848 23143866 AACTTGAGGCCATTGTTGG 59 23143284 23143805 ATCCTGAAGATACTGCAGGT 58 NA Rattus norvegicus 81 Myl7 ENSRNOG00000014409 ENSRNOT00000019335,ENSRNOT00000085847 1 2 2 80 14 86146443 86146640 AATTCAAGGAAGCCTTCAGC 59 86146382 86146402 GGGAATAAGTCTCCTTCAGGT 59 NA Rattus norvegicus 81 Stt3a ENSRNOG00000031896 ENSRNOT00000011226 2 1 4 80 8 39197768 39197786 CCAGACATAGGGATGCCTG 60 39197617 39197727 AATGCCATGAAGATAAACCACC 59 NA Rattus norvegicus 81 Gale ENSRNOG00000009712 ENSRNOT00000013322,ENSRNOT00000084085 2 2 2 80 5 154312111 154312230 CATTCGTGGAGAAGACTCCA 60 154312271 154312291 ATCTCCTCAAACTCCACAGAG 59 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721,ENSRNOT00000080289,ENSRNOT00000072848,ENSRNOT00000077561 2 6 8 92 20 4365725 4365829 AGACTCGAGGAGAGGAAGG 60 4365885 4365903 ATTCTCTGGCATTTCCGCT 60 NA Rattus norvegicus 81 Il31ra ENSRNOG00000042080 ENSRNOT00000041452 3 1 2 84 2 44339294 44339313 ACGACTCTAATTGGAGGAGG 59 44337785 44339247 GAGTCAATCGGCTGTTTGG 59 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468,ENSRNOT00000087055,ENSRNOT00000077655,ENSRNOT00000090518 1 5 8 80 20 4389081 4389099 GTCTGTCATGGATGAGCAC 58 4388931 4389038 TAGTCCGTGTCTCCATACTG 58 NA Rattus norvegicus 81 B3gnt1 ENSRNOG00000046904 ENSRNOT00000074972 3 1 1 73 1 220323975 220323994 GGTTTCAATCGAATCAGCCA 59 220324273 220324291 AAACCTTCGTTCAGCACCT 60 NA DesignNoJunction Rattus norvegicus 81 Man2c1 ENSRNOG00000030654 ENSRNOT00000048318 1 1 2 82 8 61813791 61813810 GTTCTCATGGCAATACGCTG 60 61813854 61813875 TTGATAATGGAGGCCCTTGG 60 NA Rattus norvegicus 81 Golga4 ENSRNOG00000029910 ENSRNOT00000078625 2 1 3 125 8 127190683 127190701 TTTGCTTTGGATCCCTCCA 59 127195019 127198421 TGTGTCACCTGACTGAGAC 59 NA Rattus norvegicus 81 Extl2 ENSRNOG00000014323 ENSRNOT00000091001,ENSRNOT00000019190 1 2 2 80 2 218967498 218967517 TAATGGTAGACGATGACGTG 57 218967560 218970594 TCTGATCCGGAAATTGCTG 58 NA Rattus norvegicus 81 Extl2 ENSRNOG00000014323 ENSRNOT00000091001,ENSRNOT00000019190 3 2 2 81 2 218966451 218966470 CCTCTTCAAACCACAAACGG 60 218966514 218967502 CATTAACACCGCGTTGGTC 60 NA Rattus norvegicus 81 Zfp26 ENSRNOG00000025937 ENSRNOT00000078192,ENSRNOT00000038084 1 2 2 81 8 21452364 21453110 TCTCCAAGAATGGGAAATGC 58 21452302 21452322 CCCATTTGACATATCTGACCA 58 NA Rattus norvegicus 81 Dhx30 ENSRNOG00000029194 ENSRNOT00000048764 2 1 2 85 8 118174104 118183375 CTCTCGAGCTTCTAGGGAC 59 118174037 118174055 AGATGCCAAGAGCTCTTCC 60 NA Rattus norvegicus 81 Csk ENSRNOG00000019374 ENSRNOT00000026358,ENSRNOT00000091223 2 2 2 80 8 62407322 62407341 GGTGGACTATCTTCGATCAC 58 62407161 62407279 GCTTCACAGACGTCTAGTG 58 NA Rattus norvegicus 81 Cdc40 ENSRNOG00000000581 ENSRNOT00000064081,ENSRNOT00000087740,ENSRNOT00000077926 2 3 3 80 20 48563761 48564813 GATTGTACAGTGGGACATTCG 59 48564854 48564873 AAGACAATCGTGTTGACAGC 59 NA Rattus norvegicus 81 RGD1304595 ENSRNOG00000008712 ENSRNOT00000085461,ENSRNOT00000011799 3 2 2 80 5 79398800 79400910 AGTGTGATACAGCTCTGGT 58 79400951 79400972 CTTCATTTCTTGGACATGATCG 58 NA Rattus norvegicus 81 Lrp4 ENSRNOG00000015285 ENSRNOT00000021353 2 1 2 91 3 80411694 80414303 AAGAAAGAGGGTGGACCTG 59 80414358 80414376 CATTCAGCATCATGCCCAG 59 NA Rattus norvegicus 81 Unc5d ENSRNOG00000011858 ENSRNOT00000085659 2 1 2 82 16 67522475 67522494 ATTGGTGTCACCCTCTACAG 59 67522536 67527006 AGAGAATTTCCTGTCAATGCAG 59 NA Rattus norvegicus 81 Tstd2 ENSRNOG00000009724 ENSRNOT00000090566 2 1 2 87 5 61704744 61704763 TAAGAGCAGGAGTCTGTGTC 59 61704272 61704696 CAGTGGGTCTGACAAATACAC 59 NA Rattus norvegicus 81 Nrd1 ENSRNOG00000007111 ENSRNOT00000010440 3 1 2 124 5 128648122 128652059 CTGAGAAACAGTCTGCAGC 59 128653202 128653223 ATCTGGGTATTTCAAACTACCC 58 NA Rattus norvegicus 81 LOC100911485 ENSRNOG00000046424 ENSRNOT00000055680 3 1 2 105 5 164690290 164691764 CAATGATCAGGTTCAGCGTC 59 164690204 164690222 AACCATGGAGACCATGAGC 60 NA Rattus norvegicus 81 Alpl ENSRNOG00000013954 ENSRNOT00000078851 1 1 2 195 5 156088635 156088654 TGGTTACTGCTGATCACCC 59 156087438 156087934 TTGTTGTGAGCATAATCCACC 59 NA Rattus norvegicus 81 Alpl ENSRNOG00000013954 ENSRNOT00000078851 2 1 2 195 5 156088636 156088655 GTGGTTACTGCTGATCACC 58 156087439 156087934 TGTTGTGAGCATAATCCACC 58 NA Rattus norvegicus 81 Rnf38 ENSRNOG00000013956 ENSRNOT00000077367,ENSRNOT00000060203,ENSRNOT00000091944 3 3 3 80 5 59630462 59630480 GTCTGTTACATCCAGCTGC 59 59624444 59630418 CTGTTCCTTGATGGAGCTG 58 NA Rattus norvegicus 81 Frem1 ENSRNOG00000022309 ENSRNOT00000058615 3 1 2 80 5 101023612 101023631 TTGTGACCGTATTCTCCAGG 60 101020639 101023571 TCTTCAAGCCTATCCAGAAGG 59 NA Rattus norvegicus 81 Eya2 ENSRNOG00000019203 ENSRNOT00000087530,ENSRNOT00000030119 1 2 2 91 3 162414187 162422792 CAATGAAATTGAGCGCGTG 59 162422847 162422865 CATATCTGGATGCGAACGT 58 NA Rattus norvegicus 81 Nfib ENSRNOG00000009795 ENSRNOT00000067435 2 1 3 80 5 100439798 100454039 TTACTTGGCAAAGTCCTGGT 60 100439737 100439755 CATTTGCCGGTAAGATGGG 59 NA Rattus norvegicus 81 Src ENSRNOG00000009495 ENSRNOT00000012739 2 1 2 81 3 153582303 153582322 TGACTATGAGTCACGGACAG 59 153582364 153586779 GTCTCCCTCTGTGTTATTGAC 58 NA Rattus norvegicus 81 Pde1a ENSRNOG00000054212 ENSRNOT00000084299 3 1 2 85 3 66836048 66836066 CGATGTCCCTGATACTCCA 58 66835979 66835999 CTCCATAAGCATGGTCCAC 58 NA Rattus norvegicus 81 Cnga2 ENSRNOG00000030119 ENSRNOT00000016415,ENSRNOT00000082752,ENSRNOT00000078635 3 3 3 92 16 69877426 69877444 GCCGGAGACTGGTATTACC 60 69875930 69877370 ATCACTGAAGCAGGCTCTG 60 NA Rattus norvegicus 81 Zfp385b ENSRNOG00000019065 ENSRNOT00000025803 3 1 2 109 3 64338566 64362754 CCGAACTTTAACACAATGGAC 58 64338477 64338497 AGCTGACAGACATTACAAGAG 58 NA Rattus norvegicus 81 Tfdp1 ENSRNOG00000019222 ENSRNOT00000087192 1 1 2 101 16 81105517 81113898 TTAGTCCTGGGAAAGGTGTG 59 81113962 81113980 CATTGGACTGTCCGAAGGT 60 NA Rattus norvegicus 81 Cdc16 ENSRNOG00000017536 ENSRNOT00000090674 3 1 2 127 16 81493514 81494835 GACAGTACCTGGACCAGAG 59 81494923 81496130 AAGCTTCATACAGTTTGTCCAG 59 NA Rattus norvegicus 81 Dlgap2 ENSRNOG00000012573 ENSRNOT00000057845 1 1 2 89 16 79889113 79895105 GGTCAGATGTAGAGACAGCC 60 79889043 79889061 TTTCGTCTTCCACTTGCAC 59 NA Rattus norvegicus 81 Atp7b ENSRNOG00000012878 ENSRNOT00000089265 2 1 2 88 16 74887642 74887660 CAGACGAGAAAGATCCTCC 57 74887711 74906122 AGATAAGATCTGGGACCTCC 58 NA Rattus norvegicus 81 AY172581.18 ENSRNOG00000032609 ENSRNOT00000048525 2 1 1 60 MT 5129 5147 TGAAGCCAGTAAGTAGGGT 58 5087 5106 TGGAAGGATTCAAACCTACG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049386.1 ENSRNOG00000054001 ENSRNOT00000080806 3 1 1 60 5 120176302 120176321 TTATCACAGTGCTGATGCTG 58 120176261 120176281 GCCATCCTTCAGTATTCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000058175 ENSRNOT00000086840 1 1 1 60 2 102009635 102009653 AGAGACTTTGACAGCCCAG 59 102009593 102009613 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059307 ENSRNOT00000084167 3 1 1 61 2 145884821 145884842 CATGTTCATCAATGAGTGACAG 58 145884781 145884801 TCATTCAGATGTTCAGGACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056329 ENSRNOT00000081950 1 1 1 64 2 131621068 131621086 TGAGGTTACATTGTTCGCA 57 131621022 131621040 AATGGATGATCCTCAGCCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07011090.1 ENSRNOG00000056030 ENSRNOT00000087814 1 1 1 60 2 157724043 157724065 CTTACAAATGCTGGGATTACAGG 60 157724005 157724023 ATGTCCATGTGCTCAAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055522 ENSRNOT00000090306 1 1 1 60 8 26732749 26732769 ATGTGGATCAGTAGGTGACAG 59 26732709 26732732 TAGGTAAGAACACTGAGCATAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA18 ENSRNOG00000061688 ENSRNOT00000088935 3 1 1 60 8 13868559 13868577 TTGAGGTCTATCCCGATGG 58 13868599 13868619 TATATGAGGCGTTTCCAACGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000058395 ENSRNOT00000081859 2 1 1 60 16 71209010 71209028 CAGTGGTGTCCTGGTAGAG 59 71208968 71208986 TCCCTAGGATCCCTTAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012575.1 ENSRNOG00000049706 ENSRNOT00000073822 1 1 1 66 2 197784293 197784311 ATCTCTGTGAGTTCGAGGC 59 197784341 197784359 CTCTGTGTATTGCTGGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059647 ENSRNOT00000084679 2 1 1 60 11 56105880 56105901 GAAGGATACGGCAGATATTAGC 59 56105919 56105940 GCTTCCTGAATTTGCAAATCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056882 ENSRNOT00000079314 3 1 1 61 5 139827987 139828006 TGGAACAGAGACGATTAGCA 59 139828028 139828048 CGAATGCTTCACAAATCTGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057119 ENSRNOT00000090670 2 1 1 60 8 68024849 68024871 GGAACGATACAGAGAAGATTAGC 59 68024891 68024909 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057521 ENSRNOT00000080149 3 1 1 60 8 62185768 62185789 CAACCAAATTTAGCCATCACAG 59 62185729 62185748 ACATGAACAGTGAAGGAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA41 ENSRNOG00000055453 ENSRNOT00000087703 2 1 1 61 5 59494930 59494951 TGTGGGAAAGAAACTGTTACAC 59 59494968 59494991 CCCATATTCCTCTTTCTATGTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA8 ENSRNOG00000056088 ENSRNOT00000080344 2 1 1 63 11 68058505 68058525 CCAATTGTCACTAGATCTCCC 58 68058550 68058568 TTTCACTCAATTCGCCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000059045 ENSRNOT00000078184 2 1 1 60 8 104069841 104069860 CTTCATCTCCAACTGCATGC 60 104069800 104069818 ACTGTGATAACCTGGGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000052850 ENSRNOT00000085603 1 1 1 60 8 23323385 23323406 CCTCCTTGGTAATGTATGTAGC 58 23323346 23323364 GTTTCCAAGGTCCCTTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044386 ENSRNOT00000069653 3 1 1 60 16 50847069 50847090 AACCAGATCTGGTCTGATATCG 60 50847030 50847050 TTCTTCCCTCTAAGCACTCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058928 ENSRNOT00000087365 2 1 1 60 16 49365957 49365975 GAAAGCAATCAGGCTTTGG 58 49365915 49365933 ACATCAGCTGAGTCAGTCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060696 ENSRNOT00000077724 1 1 1 60 16 81030664 81030688 CAGACTAAATTAGAAGGACACAGAG 59 81030628 81030646 AATTTGCACCCTATCCTCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052158 ENSRNOT00000089307 1 1 1 60 8 122040912 122040930 GTACATCAGGAGGTGGCAG 60 122040870 122040890 GTCATAGGTCTGAACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000061762 ENSRNOT00000090049 2 1 1 60 8 117213340 117213364 GCTGACTAGATTCCTTTCTTTATGG 60 117213304 117213324 AGCTACTTATGTTTGCCACCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000049473 ENSRNOT00000073795 3 1 1 60 2 230213364 230213385 GATCTTAGAAGCTAAGCAGGGT 60 230213405 230213424 GTAACCTCAGTTCTCCCGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000058708 ENSRNOT00000078805 1 1 1 60 16 24545284 24545302 CACATGTGTCACTAGGTGG 58 24545326 24545344 AGGTCAGAACACTGATGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055540 ENSRNOT00000084161 3 1 1 60 16 49355152 49355174 GCTAAACTTGGAACGATACAGAG 60 49355192 49355212 ATTTACGTGTCATCCTTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056975 ENSRNOT00000081177 2 1 1 60 X 21026074 21026094 AATAGAGGAGGTTTGGTCCAG 59 21026112 21026134 GTGGATGTTCTAGTAGGAGAGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071482.1 ENSRNOG00000031483 ENSRNOT00000043247 2 1 1 60 8 118378093 118378111 ACCACCTTAAAGCGGACTC 60 118378135 118378153 TTGGATTTGGTCGCAAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058633 ENSRNOT00000086110 1 1 1 60 2 176084984 176085002 GAGAAGATTAGCATGGCCC 58 176084942 176084960 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD115 ENSRNOG00000061649 ENSRNOT00000086337 3 1 1 81 1 121563651 121563671 GGGTCTATGTCGATGATAGCA 59 121563711 121563732 CCTCAGCGTAATACTATTGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000059106 ENSRNOT00000080307 3 1 1 60 6 133770713 133770731 ATGATGACAAGGTTTCGGG 58 133770751 133770773 CTCAGACTGCTAGAGATGTAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071598.1 ENSRNOG00000054937 ENSRNOT00000090467 1 1 1 125 8 123829005 123829024 ACACAGACACATACAGACAC 58 123828899 123828918 TGTGTCTGTATGTGTCTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062766.1 ENSRNOG00000051824 ENSRNOT00000085861 2 1 1 81 6 7035994 7036014 TCAGTGAGCAACTAGGAGTC 59 7036058 7036076 AAGGATGCCTTGCAAAGTG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000055269 ENSRNOT00000089917 1 1 1 61 X 105325837 105325855 AATACCGAGAAGAGTGGCA 58 105325880 105325898 AGCCCACTTCACAAATGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000054342 ENSRNOT00000091987 1 1 1 60 9 78980066 78980084 GCTGTAGTGTGCTATGCTG 59 78980024 78980044 GAGGTCACCATATTAATGCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012302.1 ENSRNOG00000009115 ENSRNOT00000091813 1 1 1 63 2 192520892 192520910 TACCAGCAGAAATGCCCTC 60 192520937 192520955 TCTTGGGTGGACACTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060809 ENSRNOT00000077795 3 1 1 60 9 23658602 23658624 TCAGTCAAGGGTATATGAGTAGC 59 23658564 23658583 CTTGAGAGCTTGTTTGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA2 ENSRNOG00000054098 ENSRNOT00000090605 2 1 1 60 X 87163075 87163096 TATGTGGACCAATAAGCAAGTG 59 87163117 87163135 AAGTGCTAATGTGGATGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054985 ENSRNOT00000080886 1 1 1 60 6 69084479 69084498 TGCTATGTCATGTATGGGTC 57 69084518 69084539 GCTGAGTGAAGAAATAGATGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060380 ENSRNOT00000081429 1 1 1 60 9 104363987 104364007 CACTGAGATCCAGATCTTGAG 58 104364029 104364047 TTCACGCCAAGATTCAGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052875 ENSRNOT00000082399 2 1 1 60 9 65051145 65051163 TCCTCAGTAAGTGGCAGAG 58 65051103 65051121 TTCACAGGTCAGAACACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000057513 ENSRNOT00000086739 2 1 1 60 6 66235355 66235373 GCTTCAACTTTGCGTCTCC 60 66235393 66235415 CTCAGTCATCATCTACAGGACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054731 ENSRNOT00000089092 3 1 1 60 6 29114594 29114614 CATTAAACTGGGACAGCACAG 60 29114554 29114573 TCATGAAGTTGCGTCATCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059999 ENSRNOT00000078954 3 1 1 60 X 20520605 20520623 GACACCACAGTCAAGAAGG 58 20520646 20520665 ATATACCGAGTGCGACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061036.1 ENSRNOG00000053228 ENSRNOT00000090283 1 1 1 80 4 103024462 103024807 TTTGGATTCCAGCTTCCAG 58 103024400 103024419 AAGCTTGATCTCCAAGTGTG 58 Novel Rattus norvegicus 81 AC106663.2 ENSRNOG00000055372 ENSRNOT00000088751 3 1 1 69 14 86711703 86711726 CAATTGAAATGGATGCAGTCAG 59 86711755 86711774 TAAACACCTTCCAGCTCCTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07018218.1 ENSRNOG00000060554 ENSRNOT00000083932 1 1 1 106 15 47340838 47340857 AAAGAGGTCATCAGGAGGTG 59 47340926 47340946 AGACATCCTGAACCCTTGC 60 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000057593 ENSRNOT00000090992 2 1 1 60 X 112166146 112166164 ACATCAGTAGGCAGCAGAG 59 112166104 112166122 TGTTCACAGGTCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054241 ENSRNOT00000079402 2 1 1 60 X 133363725 133363743 TCGGTCAAGGGTATACGAG 58 133363683 133363702 CTTGAGAGCTTGTTTGGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA11 ENSRNOG00000053998 ENSRNOT00000090733 2 1 1 61 X 63668874 63668892 AACTGACTCCTCTGTTTGC 58 63668831 63668849 GTGCTTCTTATCACAGCGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052900 ENSRNOT00000082512 2 1 1 68 16 87696667 87696688 TGTAGCTATTGTGACACATGTG 59 87696620 87696640 AGACCGAACATAGACATAGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053976 ENSRNOT00000091887 1 1 1 60 15 11045036 11045057 ACATCAATAGGTGACAGAAAGG 58 11045078 11045096 TTCATGGGTTGGAACACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059048 ENSRNOT00000079127 2 1 1 60 10 74989646 74989664 CAGAGATTAGCATGGCCTC 58 74989604 74989622 AAACATGGAACACATCCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068593.1 ENSRNOG00000057081 ENSRNOT00000079170 1 1 1 208 9 110721471 110721489 TAGTGTGGAGGTCAGAGGA 59 110731672 110731690 CTTGTTGCCTTTGTCCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000057777 ENSRNOT00000090516 3 1 1 60 7 45060777 45060797 TCACAGTTGAATCAGAAGGAG 58 45060818 45060837 TCACAGGTGAGAACACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052125.1 ENSRNOG00000047241 ENSRNOT00000072489 2 1 1 80 3 38017414 38017436 AACACATGACAACCCTGGA 59 38017477 38017498 CTTGTATTCTGTTGGTGAAGCT 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000058149 ENSRNOT00000090194 2 1 1 60 6 117111707 117111726 CTCCAGATATGCTGAACCCT 59 117111749 117111767 GTGTGAACACAGTCCTCCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055884 ENSRNOT00000088014 1 1 1 60 7 119070258 119070279 GAAACGATACAGATTAGCTTGG 57 119070219 119070237 TGGAACTCAATGCATTTGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041705 ENSRNOT00000063458 1 1 1 60 7 67029051 67029069 TTAGCAGCTAAGCAGGGTC 60 67029009 67029027 TATCCTGTTTGGCGTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057232 ENSRNOT00000088949 2 1 1 60 10 65227698 65227717 TGGATGAGTAGGTGACAGAG 58 65227739 65227758 TCATAGGACAGAACACTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061599 ENSRNOT00000081769 1 1 1 60 12 38675059 38675080 CTCCCAAATGCAAGAAATTCAG 59 38675020 38675038 GAGCATGAACACAGTCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063281.1 ENSRNOG00000054165 ENSRNOT00000084242 3 1 1 80 6 26444033 26444051 GATCAGCCATCCAGAGGAG 59 26439817 26441481 TAGATGGGACAGTGAGTCCT 59 Novel Rattus norvegicus 81 U2 ENSRNOG00000059533 ENSRNOT00000078169 2 1 1 60 8 117815367 117815388 GACCTAGGAGTTGGAATAGGAG 59 117815328 117815348 CTGCAATACCAGGTTGATGTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053403 ENSRNOT00000088789 1 1 1 60 8 115912478 115912496 CTGTCCCTAGAAGCTTGCA 59 115912520 115912538 CTCTGCCACCTACTGACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000053593 ENSRNOT00000080809 2 1 1 60 1 189345546 189345565 TAGATGACTGGACAGGAGAG 58 189345505 189345524 TTTCTAAGCTCTGGTGAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA9 ENSRNOG00000056770 ENSRNOT00000083475 1 1 1 61 1 87931424 87931442 TACAGAGCTTGCCAGAACC 60 87931381 87931399 TGCCTTGGATGAAGAAGGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057950 ENSRNOT00000078409 1 1 1 60 1 152004312 152004331 GCATATGCATCAGTAGGTGG 59 152004351 152004372 GGTTAGAACACTGAGTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031767.1 ENSRNOG00000053112 ENSRNOT00000088278 2 1 1 103 18 33444375 33444398 GTGCAAAGGATCTGTTCTATAAGG 60 33444461 33444479 TGAGTCGAAGAAGTGGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA47 ENSRNOG00000044194 ENSRNOT00000069461 3 1 1 60 2 25046228 25046246 TGGAGCAGTTCATACCGTG 60 25046269 25046288 GCTAGCCCTTTACTGTTGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056646 ENSRNOT00000090634 1 1 1 60 2 26671213 26671234 GCTTGACACAGAGAAGATTAGC 60 26671174 26671192 GCTTGTTCAATTGGCATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07008293.3 ENSRNOG00000057463 ENSRNOT00000071415 1 1 1 80 2 52156636 52156656 AGAATGCAGATCCCATGCT 59 52156700 52156718 TGTGTCTGCTTTGATGTGG 58 Novel Rattus norvegicus 81 AABR07027731.1 ENSRNOG00000049396 ENSRNOT00000072988 3 1 1 60 17 42825637 42825657 TAGTTCAGCTGTTCGATCCTC 60 42825597 42825617 GCATCATGGATGAGAAGATGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068355.1 ENSRNOG00000051904 ENSRNOT00000082949 1 1 1 94 9 101005211 101005229 CTTAGCCCTGATGACTCCC 59 101005394 101005412 TCCAGTACACTCAGAACGC 60 Novel DesignNoJunction Rattus norvegicus 81 AC103090.1 ENSRNOG00000053437 ENSRNOT00000084200 2 1 1 60 10 13780198 13780216 CAACTTTGCTGCTCATTCC 58 13780156 13780174 GAAAGCCAACAGGGTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054135 ENSRNOT00000088547 1 1 1 60 15 24285152 24285173 GCCATACCTAACTGATGATCAC 59 24285192 24285212 AATCCAATGGGTAAGTCTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Cfap61 ENSRNOG00000011028 ENSRNOT00000075899,ENSRNOT00000014713 3 2 4 80 3 140310628 140310646 TCAACTCATGGACTCCCAG 59 140310689 140316290 ATCATTAAAGCAGTGGTCGC 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000055244 ENSRNOT00000077247 1 1 1 60 3 118986634 118986652 GAGAAGATTAGCATGGCCC 58 118986674 118986694 CCTATCTAGTGTCTGTCAGGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC141152.1 ENSRNOG00000046520 ENSRNOT00000070924 2 1 1 60 4 9903119 9903139 CCTTGAACTCAGAGATTCTCC 58 9903159 9903179 TGGTACAGCCTTTAATCCCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051565 ENSRNOT00000081252 1 1 1 60 4 75730946 75730967 GGCTAATTATGCTTCCATAGTG 57 75730987 75731006 GGTTACCACATGCAATACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC094298.1 ENSRNOG00000026046 ENSRNOT00000038157 2 1 1 60 14 71710630 71710648 GAGACCAAAGTGAGCAGAG 58 71710588 71710608 AGTTATAGCCCTCAACAACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Ifit1lb ENSRNOG00000036603 ENSRNOT00000076802 3 1 1 81 1 252916827 252922404 ACCATGAGTGAAGAATCTCG 58 252916765 252916786 TAACCAACTCCCAAGTAAAGTG 58 Novel Rattus norvegicus 81 AABR07067583.1 ENSRNOG00000055728 ENSRNOT00000085193 2 1 1 60 9 52938082 52938100 AGGCAGCTCCATATTCGTC 60 52938121 52938142 ATAACCAAAGAGCAATGTAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054234 ENSRNOT00000085855 2 1 1 69 4 101750153 101750173 CTACCACCTACAGGTATAGCA 58 101750104 101750122 TTCTGTGCCACCTACTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053947 ENSRNOT00000082728 1 1 1 60 9 85305499 85305518 GTGTCTCATGAGCATCAGAG 58 85305458 85305482 CCTATATCAGAACACTGATATAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000054501 ENSRNOT00000083019 1 1 1 64 6 52306142 52306160 AAAGAAGCTTAGCACTCCC 58 52306096 52306114 CATGTGGGTGTTGTTAGGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07020994.1 ENSRNOG00000057663 ENSRNOT00000087794 1 1 1 80 13 51937099 51939266 CATGTTGGGCGATTCTCAG 59 51939311 51939329 GCATATGTCCTCCTCTTCC 57 Novel DesignNoJunction Rattus norvegicus 81 5_8S_rRNA ENSRNOG00000053888 ENSRNOT00000090107 2 1 1 60 1 11970126 11970144 GATGAAGAACGCAGCTAGC 59 11970166 11970186 GTCGATGATCAATGTGTCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071848.1 ENSRNOG00000060610 ENSRNOT00000078193 3 1 1 60 1 12952688 12952711 CTTACGGAGGTCTTAATTTATGGC 60 12952651 12952669 GAAGCATCCATTTAGCCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0645.2 ENSRNOG00000051275 ENSRNOT00000076719 2 1 1 60 X 63537996 63538018 GCTTAGGTAGCAAAGCATAAGTC 60 63537958 63537980 CATAAAGCTCAACACCCATACTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055463 ENSRNOT00000077310 1 1 1 61 17 16386271 16386289 TCACATGTGCGTCAGTAGG 60 16386312 16386332 GTCAGAGCATGGAACATAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055463 ENSRNOT00000077310 2 1 1 65 17 16386261 16386279 GACTGCTGTGTCACATGTG 59 16386304 16386326 GCATGGAACATAGACATAGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055824 ENSRNOT00000091726 1 1 1 64 1 62062210 62062229 AGAGAAGATTAACATGGCCC 57 62062165 62062184 AAACACATGGAATGCTTCAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059236 ENSRNOT00000085489 1 1 1 60 X 73798459 73798477 ATACTCACTTTGGCAGCAC 58 73798417 73798436 GGCCATGGTAATCTTCTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054598 ENSRNOT00000087639 3 1 1 60 2 260837372 260837391 CTAAAGCTGAGCTCTCAGTG 58 260837331 260837350 ACAGGTCCTCCTCTATTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000056164 ENSRNOT00000079132 3 1 1 61 3 150417897 150417915 TTGTGGTTGTTCCAACTGC 59 150417940 150417958 TGTGATAACCTGGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000051851 ENSRNOT00000083882 2 1 1 60 12 38654192 38654212 CCCAAATGCAAGAAATTCAGC 59 38654152 38654171 AAGAGCATGAACACAGTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056813 ENSRNOT00000092228 3 1 1 60 3 136819821 136819839 GTCCTTAGAGGCTTTGCAG 58 136819861 136819881 TCTCTACTACCTACTGGTGCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC122603.2 ENSRNOG00000059288 ENSRNOT00000078628 3 1 1 131 16 20052151 20052169 TTTGGCTTTGAAGGCACAG 59 20052037 20052056 CTTTGTGTCTCAGGTGTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA74 ENSRNOG00000058587 ENSRNOT00000091686 1 1 1 60 3 142141689 142141707 GGTTTCCTTGTACCTAGGC 58 142141731 142141749 CAACTTGCTATTGGCTGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1564534 ENSRNOG00000032038 ENSRNOT00000043280 1 1 1 91 X 63054173 63054191 TAAGTGCCCTGGATTCTGC 60 63054245 63056315 ATACTCCAAGGGCAAGAGAC 59 Novel Rattus norvegicus 81 AABR07050317.1 ENSRNOG00000052409 ENSRNOT00000080134 2 1 1 98 5 160826743 160826763 ATAAGCCTGCTTGTCTTGC 59 160826830 160826848 TTTCCCATCAGAGACCGTG 59 Novel Rattus norvegicus 81 AABR07006105.1 ENSRNOG00000052685 ENSRNOT00000080189 2 1 1 60 1 220354346 220354365 GGTGGCTTTGAGTGTTACTG 59 220354385 220354406 TACAACTGATACCATCTGCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Susd6 ENSRNOG00000045941 ENSRNOT00000070995 3 1 3 81 6 104526262 104526282 AAAGACACTGCAGATTCAGAG 58 104526322 104528744 GTGGGATATCATCTGTGTACTC 58 Novel Rattus norvegicus 81 AC122603.1 ENSRNOG00000032095 ENSRNOT00000051003 2 1 1 66 16 19954765 19954787 TAGCTCATTTCCTGGTATGAC 57 19954815 19954833 TGTAGGCCATGAGATCCAC 59 Novel DesignNoJunction Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000059789 ENSRNOT00000082557 1 1 1 60 12 7115999 7116017 GGAGTTCTGGGCTGTAGTG 60 7115957 7115977 TATTGATGCCGAACTTAGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004539.1 ENSRNOG00000056733 ENSRNOT00000086862 2 1 1 81 1 147270597 147270618 CAGAGACAACTAGTACAACCCT 59 147262624 147270555 TCTTCCTGGACTTTGGCTG 60 Novel Rattus norvegicus 81 AABR07029842.1 ENSRNOG00000050824 ENSRNOT00000070824 1 1 1 60 10 54769672 54769692 ACTCATGTAGATCCAGTTCCA 58 54769714 54769732 CCCTTACTGAAGAGTGCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057878 ENSRNOT00000080539 3 1 1 60 12 2299875 2299895 AGACTCGTCTTAAGTCAAGGG 59 2299835 2299854 TGTTTAGAGGCTCTAGCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057603 ENSRNOT00000090692 2 1 1 60 1 82084759 82084778 GAGAAGATTAGCATGGCCTC 58 82084801 82084819 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052747 ENSRNOT00000091868 3 1 1 60 4 106621990 106622010 TAGAGTCACTCCAGTTGTGAC 59 106622031 106622050 CTAAATCTGTGCCACCTACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD14 ENSRNOG00000057762 ENSRNOT00000077873 1 1 1 60 1 185329791 185329810 TGATGGTGTTCCAACATTCG 59 185329833 185329851 GAAGGTCTACCCAACACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000051966 ENSRNOT00000088761 1 1 1 72 12 46862483 46862501 ATGAGGTTTATCCGAGGCG 60 46862429 46862447 ATTTCAAGTCGTCATGGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036167.1 ENSRNOG00000045927 ENSRNOT00000074199 3 1 1 60 12 35318519 35318538 GTCCATTCTCAAGCTCACTG 59 35318478 35318497 TCCCTATGACCATATGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC118794.1 ENSRNOG00000059865 ENSRNOT00000079215 1 1 1 80 16 2461191 2461211 CCTTCACTGGAGAAATATGGA 57 2461252 2469952 AAGGTCATACCAATGTCCAC 58 Novel Rattus norvegicus 81 AABR07011708.1 ENSRNOG00000048557 ENSRNOT00000071263 2 1 1 70 2 166850505 166850523 GAGATCCAGCTGTAAGGCA 59 166850556 166850575 GGATGTTACTACCCACAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130862.3 ENSRNOG00000056968 ENSRNOT00000080692 2 1 1 84 X 105563549 105563567 CATCTCCACTACGTGGTCC 60 105563482 105563501 ATACCCATCCAAGCGTTCC 60 Novel Rattus norvegicus 81 U6 ENSRNOG00000056952 ENSRNOT00000091329 2 1 1 60 3 148628948 148628969 AATACAGAGATTAGAATGGCCC 58 148628988 148629008 ATGGAATGCTTCACCAATTCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA42 ENSRNOG00000056978 ENSRNOT00000087390 1 1 1 66 12 40881468 40881486 ATAGTGTCCCGTGCTAGAG 58 40881420 40881438 CAGGAGCCTACAGACAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA19 ENSRNOG00000059915 ENSRNOT00000084224 1 1 1 60 14 11184227 11184245 TTTCAGAGCACACGTTGTC 59 11184268 11184287 GTCACTCTGCTAACTACCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07062390.1 ENSRNOG00000054639 ENSRNOT00000073168 1 1 1 80 4 173974826 173974850 GAAACTATGGCCAGAAGATCC 59 173974892 173974910 TGGATACAGTAACCTGGGC 59 Novel Rattus norvegicus 81 AABR07010370.1 ENSRNOG00000054361 ENSRNOT00000086680 1 1 1 60 2 133290138 133290156 AGAAGTTAGACCACAGGGA 57 133290180 133290200 TCTTTGTTTAGCTCTGAACCC 58 Novel DesignNoJunction Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000060346 ENSRNOT00000088659 3 1 1 60 14 112298874 112298895 TTACTCAGTAAATGGCTACCCT 59 112298835 112298855 TACATCTGTTCAGACAGGGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007758.1 ENSRNOG00000046691 ENSRNOT00000075436 1 1 1 61 2 27324679 27324697 TAGTTCTGAGCACTGCCTG 59 27324636 27324654 TCAGAGTTTGAGGACAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142138.1 ENSRNOG00000056579 ENSRNOT00000089509 3 1 1 69 3 9540857 9540876 TGGTTATTAAGGAGCATGGG 57 9540802 9540820 GAAGACAGTGTGAGGAACG 58 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000054482 ENSRNOT00000086166 1 1 1 60 17 17451844 17451862 ACCACTCCACAATTTGCTG 59 17451886 17451904 CTACTGGGCTACCTTCGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059570 ENSRNOT00000078833 3 1 1 60 17 43922810 43922832 CGATACAGAGAAGATTAGCATGG 59 43922852 43922870 CGTTCACGGAATTAGTGCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052892 ENSRNOT00000079496 2 1 1 75 2 186583601 186583619 TCACATGTGCGTCAGTAGG 60 186583544 186583562 TCAGATGTTCACGGGTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061002 ENSRNOT00000082742 3 1 1 60 12 15115796 15115814 ATGTGCTGATACAGGACGG 60 15115836 15115856 GTATCTCATCCTTGCGAAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000052324 ENSRNOT00000083772 1 1 1 74 14 75229480 75229501 TCCAAAGGTAGTGAGTTATCTC 57 75229536 75229554 GTATTGGATCGGGAAGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059879.1 ENSRNOG00000031045 ENSRNOT00000046350 3 1 1 60 4 40004991 40005009 TTATCTGCACTGCCAAGAC 58 40005033 40005051 TTCACCTTCCCAAAGACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC128786.1 ENSRNOG00000050026 ENSRNOT00000071789 2 1 1 98 1 102284412 102284431 GGTAGCAGCTAGAAGAAAGG 58 102284333 102284351 TCTAGAAGCTGCCCATCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059140.1 ENSRNOG00000060116 ENSRNOT00000089932 2 1 1 60 4 4502120 4502141 AAGAGCCATTTGAAATGACAGG 60 4502162 4502180 TGGCTCACTAGAGCATCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097038.1 ENSRNOG00000059928 ENSRNOT00000081357 3 1 1 81 10 46183013 46183038 GTTTGTGATCAACTCTATCAGGAC 60 46183080 46183100 GTTATTCTGTGGTGGCTTTCC 60 Novel Rattus norvegicus 81 AABR07056470.1 ENSRNOG00000058647 ENSRNOT00000078534 1 1 1 89 7 26440504 26457239 TGTGAAGACATACAATGCCC 58 26457289 26457309 GGGTTCATTGTCAGTATTCCA 58 Novel Rattus norvegicus 81 AABR07043453.1 ENSRNOG00000053751 ENSRNOT00000083821 3 1 1 82 19 28665650 28666847 ATCCATGAAGAACAGGCCA 59 28665586 28665604 GAATTGACATGACCGCCTC 59 Novel Rattus norvegicus 81 Rn60_13_0801.2 ENSRNOG00000051166 ENSRNOT00000076586 1 1 3 80 13 75164272 75164291 TGACCCTTTCTGGTCTTCTC 59 75164332 75171892 CCATTTCAGTGGAGTTCATCC 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000058043 ENSRNOT00000082724 3 1 1 60 14 31554882 31554902 TCAAGGGAATACAAGTAGCTG 58 31554842 31554861 AAACTCGAGAGCTTGTTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100362999 ENSRNOG00000004239 ENSRNOT00000005614 3 1 1 60 6 59300465 59300487 GACTCAATGAAATCCTCAGTGAC 60 59300425 59300443 ACCATGACTTCTGGATCCT 58 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000054369 ENSRNOT00000081139 3 1 1 65 2 139869816 139869834 GCATCATTAGGTGGCAGAG 58 139869769 139869789 ATTACCAGATGTTCACAGGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052457 ENSRNOT00000088539 3 1 1 66 17 87158250 87158269 CACCTCAGCAGCATATACCA 60 87158298 87158316 TTGCGTGTCATTCTTGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6atac ENSRNOG00000057098 ENSRNOT00000083604 2 1 1 60 2 53432092 53432111 ACAGAAAGCTTAACACTCCC 58 53432051 53432070 TTAGAAGGTGTTAGGCACAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055162 ENSRNOT00000080902 3 1 1 61 1 264686110 264686129 CAGGAAGATTAGCTTGACCC 58 264686152 264686171 ATTATGGAACGCGTCATGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063672.1 ENSRNOG00000048410 ENSRNOT00000070791 1 1 1 62 6 41026076 41026094 GAATGACACTCCAGGTGGA 59 41026032 41026050 CACCTCTGACTCACTGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063672.1 ENSRNOG00000048410 ENSRNOT00000070791 3 1 1 63 6 41026076 41026094 GAATGACACTCCAGGTGGA 59 41026031 41026049 GCACCTCTGACTCACTGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911249 ENSRNOG00000056251 ENSRNOT00000080740 2 1 1 115 1 85253162 85253180 TGACACTGAAGGTCTTGGG 59 85253259 85253378 CTGAGGCTCTGTACAGGTC 59 Novel Rattus norvegicus 81 U4 ENSRNOG00000056383 ENSRNOT00000078246 1 1 1 64 1 30150400 30150418 AATGAGGTTTATCCGAGGC 57 30150354 30150375 CATAACAGAAAGATGCTCAGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000056383 ENSRNOT00000078246 3 1 1 66 1 30150401 30150420 CCAATGAGGTTTATCCGAGG 58 30150354 30150375 CATAACAGAAAGATGCTCAGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041974 ENSRNOT00000063727 1 1 1 60 1 249644137 249644155 CCTGAATGTGCCTGATCTC 58 249644095 249644114 GTACTAAACAGACCTGACCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07022023.1 ENSRNOG00000046240 ENSRNOT00000074553 2 1 1 90 13 103376381 103376399 ATGAGGATCAGACGGAAGC 59 103376304 103376329 CTCTTAAGTCGGAGTTCTTGC 59 Novel Rattus norvegicus 81 LOC100360491 ENSRNOG00000006283 ENSRNOT00000008276 1 1 1 79 8 6749876 6749894 CTTTAAGGCTTTCGCCAGC 60 6749814 6749832 CTTCTTTCGCCCTCTTTGC 60 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000057265 ENSRNOT00000089084 2 1 1 60 2 33531796 33531815 GACTGTGAATAGCTGCACTC 59 33531755 33531773 ACAGATGGACCCATAGAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047771.1 ENSRNOG00000061900 ENSRNOT00000083099 1 1 1 80 5 46752103 46752125 AGATTTCACCTCACATGCG 58 46752041 46752060 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 Rn60_13_0839.5 ENSRNOG00000051303 ENSRNOT00000089351 3 1 2 85 13 78979473 78983047 AAACTGCCAGAGGGTACAC 60 78983096 78983114 AACATCCAGTTCCACCAGG 60 Novel Rattus norvegicus 81 AABR07065049.1 ENSRNOG00000036502 ENSRNOT00000054610 2 1 1 60 6 106143531 106143549 TACTGTACACATGGGCTGG 59 106143572 106143591 TATTTGGTTGTGAGCCTAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005888.2 ENSRNOG00000060219 ENSRNOT00000077702 3 1 1 227 1 204320863 204320882 TTCATTCCCTGTACAGCCTG 60 204321076 204321094 CTCTGAGCTAACCTGTCGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07028568.2 ENSRNOG00000058428 ENSRNOT00000085781 2 1 1 80 17 75207299 75207317 CCAAGTCAAGTGTGCAGAG 59 75207360 75207381 TAGCCTGTTTGACATGTGGA 59 Novel Rattus norvegicus 81 AABR07006619.1 ENSRNOG00000050486 ENSRNOT00000071075 3 1 1 217 1 242809206 242809224 CATCGAGAGCATCATGCAG 59 242809003 242809021 CACAGTGATGCTCTTCCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07008724.1 ENSRNOG00000019037 ENSRNOT00000025809 2 1 1 80 2 71753819 71754348 AAAGTTACATCAGCTCAGGAC 58 71754387 71754408 CAATTCCACCTTCAGATTATGC 58 Novel Rattus norvegicus 81 Rn60_X_0745.3 ENSRNOG00000051218 ENSRNOT00000076778 1 1 1 60 X 73622636 73622655 AATATGCAAGATGCAAGCTC 57 73622678 73622696 CCAGGTCACTAAACCACTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061860.1 ENSRNOG00000043615 ENSRNOT00000068882 1 1 1 60 4 149826578 149826596 GGCCTTGTTGAAGGAAGTG 59 149826620 149826638 TGGCTTGAACATCTGAAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044082 ENSRNOT00000069349 2 1 1 60 2 48907267 48907287 GATCTTGGAAGCTAAGAAGGG 58 48907306 48907327 TAGAACTACAGATCTTCCACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044767 ENSRNOT00000070034 1 1 1 60 4 125508150 125508170 TGATCTCAGAAGCTAAGCAGG 60 125508110 125508128 ACTCCTTCATTCTCCCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC113773.2 ENSRNOG00000058178 ENSRNOT00000090224 3 1 1 182 1 255170931 255171109 CCTGATTCGGCTAGAATTATATCAG 59 255170484 255170503 CCTCTTCCTCTTCTTCCTCC 59 Novel Rattus norvegicus 81 AABR07015078.2 ENSRNOG00000059504 ENSRNOT00000080984 1 1 1 60 14 46650337 46650355 TGTTCACCTTGGAGACCTG 59 46650295 46650313 AGAGGGTGTAAATCTCGCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC240408.1 ENSRNOG00000060553 ENSRNOT00000083719 3 1 1 62 Y 1590138 1590156 AAGAAGTTAGACCGCAGGG 59 1590092 1590113 TTCTTTGTTTAGCTCTGAACCC 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000060080 ENSRNOT00000085065 2 1 1 60 14 20067088 20067106 ATGGCTGATCTAACTGGCT 59 20067046 20067067 CATTTACATGGAGTGTTGAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA15 ENSRNOG00000059209 ENSRNOT00000080079 1 1 1 60 10 104714068 104714086 AAGAAGACGGCTGAGTCTG 59 104714026 104714045 CCCTTTGTCTAGGAGGAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Sry3 ENSRNOG00000054335 ENSRNOT00000088534 2 1 1 60 Y 705881 705899 TGCATTTATGGTGTGGTCC 58 705839 705858 CATGCTGGGATTCTGTTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07055792.1 ENSRNOG00000046029 ENSRNOT00000040134 1 1 1 84 7 10091424 10091443 ATGAATGTGATCAGTGTGGT 57 10091487 10091510 CATAGGGTTTCTCCAGTATGAG 58 Novel Rattus norvegicus 81 AABR07035267.1 ENSRNOG00000046209 ENSRNOT00000070896 3 1 1 60 12 9001190 9001210 CTGAACTCAGAGATTTGCCTG 59 9001231 9001250 GTAGCACACGCCTTTAATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014756.2 ENSRNOG00000047135 ENSRNOT00000072268 1 1 1 62 14 30326695 30326714 CAGATGTGTTTCCATTCCAC 57 30326652 30326673 GAATACTGCAAGAGCAATAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoR38 ENSRNOG00000054872 ENSRNOT00000086564 3 1 1 61 10 105646451 105646475 AAGGATGATCTAAGTTATCCCTGTC 60 105646491 105646512 TCAGTAAACCGTGAATCTTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000051913 ENSRNOT00000090471 2 1 1 60 6 79926891 79926911 CAAGGATGAAGGAACTACTGG 58 79926851 79926871 CATGTAGATGGGACAACTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA66 ENSRNOG00000061409 ENSRNOT00000085510 3 1 1 60 14 2863661 2863679 CTAGCTCTGCATGATGTGG 58 2863619 2863638 TCACCACAGTTACTCTAGCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059151 ENSRNOT00000086556 3 1 1 72 6 124644946 124644967 GCAGCACATACATATAAATGGG 58 124644895 124644913 ACAAATTGCCTGTCCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055066 ENSRNOT00000083524 1 1 1 60 3 113086312 113086332 GTGCTAACATTGGAATGACAC 58 113086272 113086291 TTCATGTCATCCTTGCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000059449 ENSRNOT00000082659 1 1 1 60 10 59151756 59151774 GGAGTTCTGGGCTGTAGTG 60 59151795 59151816 TATTGATGCAGAACTTAGTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA24 ENSRNOG00000055813 ENSRNOT00000083091 2 1 1 60 2 23481228 23481246 TGCTACTGGTAAAGCAGTC 57 23481270 23481288 CGGTTATTTGTGCACACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000057115 ENSRNOT00000087409 1 1 1 60 1 88820837 88820855 CCTTGTGGCTAACTGAGTG 58 88820795 88820818 GACAGGACATATCCGATATTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017639.2 ENSRNOG00000055238 ENSRNOT00000078176 3 1 1 60 15 29547996 29548015 AGAGTGGAAGACTGACATCC 59 29547955 29547974 GAGATGTGCAAAGAGCTACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07067976.1 ENSRNOG00000057942 ENSRNOT00000077342 3 1 1 81 9 74960339 74960358 GGTAAGAAGTCCTGCAACTG 59 74960402 74960436 GGGACACCATGATACACAG 58 Novel Rattus norvegicus 81 Rn60_13_0849.2 ENSRNOG00000051254 ENSRNOT00000076116 1 1 1 80 13 79913061 79913081 CTGAATACTTGGATGGACGAG 58 79913121 79934303 GTTTGGTCCAGATGTATCCAG 59 Novel Rattus norvegicus 81 U6 ENSRNOG00000056816 ENSRNOT00000084287 2 1 1 60 2 52529277 52529295 TGATGCAGACAAGACTAGC 57 52529317 52529337 CTTCAAGAATTTGCATGTCCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07030386.1 ENSRNOG00000047289 ENSRNOT00000071187 2 1 1 60 10 83650417 83650436 GCCTTGAACTCAGAGATCCA 60 83650459 83650477 TCTCATGCCTTTGATCCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA67 ENSRNOG00000053701 ENSRNOT00000084579 3 1 1 60 12 39663286 39663306 GTAGCAACTTGGAAGAAAGCC 60 39663246 39663266 AACAAGTATTCCCTGTTCACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000051549 ENSRNOT00000086347 3 1 1 60 12 25779616 25779637 CACACTAAGATTGGAACAACAC 58 25779657 25779676 TATGAGTGTCATCCTTGCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003537.1 ENSRNOG00000021484 ENSRNOT00000032154 1 1 1 60 1 114175213 114175231 TATGTGGAATGCTCAGCTC 57 114175255 114175273 TGATAGCCTCGTCAAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07051253.1 ENSRNOG00000056675 ENSRNOT00000090568 2 1 1 80 3 4139246 4140186 ATACACAGCCTATAGTGGCA 58 4139185 4139209 CCCTCATAGTAGAAGATATAGTGGT 59 Novel Rattus norvegicus 81 AABR07069942.2 ENSRNOG00000056097 ENSRNOT00000079094 2 1 1 60 8 42786944 42786965 TTCTGTTCCTGAGCATCGT 59 42786989 42787007 GAGATGAGCAGGATCATGC 58 Novel DesignNoJunction Rattus norvegicus 81 Rn60_X_0742.1 ENSRNOG00000051134 ENSRNOT00000076427 1 1 1 83 X 73370315 73370333 ATAGCCAAGAACTTGCCTG 58 73370378 73371453 GCCAGTTAACAGTATCAAGGT 58 Novel Rattus norvegicus 81 snoU54 ENSRNOG00000059478 ENSRNOT00000085342 2 1 1 65 5 16706729 16706749 GCGATGAGGAGATACCTACTG 60 16706684 16706702 TATCGGCTCAGAATAGCGT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007690.2 ENSRNOG00000041749 ENSRNOT00000063502 2 1 1 75 2 24178741 24178759 GGCTGTTAAATGGCGATCC 59 24178798 24178816 TGGCTGAAGAGACTGTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068285.2 ENSRNOG00000061524 ENSRNOT00000086903 2 1 1 93 9 95786920 95786943 GAAGATCAAACTGACCGGC 59 95786845 95786864 CTGATAGGACTTCACAACGG 58 Novel Rattus norvegicus 81 AC120070.1 ENSRNOG00000054181 ENSRNOT00000085373 3 1 1 80 1 148267798 148267819 AGACAATGAGCTCAACATTGAG 59 148267858 148281760 TCTCTTCCTGGACTTTAGCTG 59 Novel Rattus norvegicus 81 SNORA2 ENSRNOG00000058669 ENSRNOT00000078457 1 1 1 60 5 6800274 6800292 TCGTACTGTAGCTGTTGGT 58 6800314 6800334 CAACAAACCACAGGAAGACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07010476.1 ENSRNOG00000057358 ENSRNOT00000083443 2 1 1 80 2 137150774 137150795 ATCAAACCTGTACTTGCAAGAC 59 137148853 137150735 TCTGTTCTTCTGAACGAAAGG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000058635 ENSRNOT00000086372 3 1 1 60 3 165667601 165667619 ATCCTAAAGGCTGCAGGTG 60 165667559 165667577 TCTTCTCTGCCACCTACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057442 ENSRNOT00000085558 1 1 1 61 3 177169958 177169978 CCATATACCAACATTGAACCG 57 177170001 177170019 GTGTCTTCCTTGCACAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07013288.3 ENSRNOG00000050314 ENSRNOT00000072390 2 1 1 60 2 231875233 231875252 TTAAACGTGGTTGTCCTTGC 59 231875274 231875293 CATCACCCAAACATGGAAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07040690.1 ENSRNOG00000055939 ENSRNOT00000092013 2 1 1 68 X 107634279 107634299 ATACAGTCGTTCGCTGGAG 60 107634331 107634349 ATGGACTTGGCTTAGCCAG 60 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000056991 ENSRNOT00000082565 2 1 1 60 2 82960158 82960181 GATAAAGAGAAGATTAGCATGGCC 60 82960199 82960218 GAATGCTTCACGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057845 ENSRNOT00000078090 2 1 1 60 1 215027281 215027300 CTGAAACTGGGACAGTATGG 58 215027240 215027260 GAATCTCTGTCATCCTTGCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000059590 ENSRNOT00000081502 1 1 1 60 1 73770493 73770513 AGCTAGAAGAGGAGATACCAG 58 73770453 73770471 GGTAGATAAGCCTCACCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000053442 ENSRNOT00000089159 1 1 1 60 6 133824031 133824050 CCAATGATGAGATCTGGTGG 58 133824070 133824091 GATATCTGTTCACAAGGCTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD46 ENSRNOG00000061361 ENSRNOT00000087225 1 1 1 64 5 136022659 136022677 ATCCTTAGGCGTGGTTCTG 60 136022613 136022631 GACAAGTCCTTGCATTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060704 ENSRNOT00000088157 2 1 1 60 5 61714750 61714768 GTCTACAGGCCAATCTGCT 60 61714791 61714810 TAGTCCTCATATGAGGCTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_13_0899.1 ENSRNOG00000051222 ENSRNOT00000076576 3 1 2 81 13 84968734 84970074 CAGTACAGGTATCAAGAACACC 59 84968674 84968692 CTCTAGTAATGCAGGGCAC 58 Novel Rattus norvegicus 81 7SK ENSRNOG00000061887 ENSRNOT00000079428 3 1 1 60 9 17933211 17933232 GGATGACCTTCCCTGAATAGAG 60 17933253 17933271 CACAGCTACTCGTACACCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061807 ENSRNOT00000079387 3 1 1 61 1 146766594 146766612 AGAGAAGATTAGCATGGCC 57 146766551 146766569 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048637.1 ENSRNOG00000059056 ENSRNOT00000088086 1 1 1 80 5 85857427 85857649 TCAGGACCACAGAAATAGCAG 60 85857365 85857383 TTCTGTTGCTTGGGTTCCT 60 Novel Rattus norvegicus 81 AABR07048637.1 ENSRNOG00000059056 ENSRNOT00000088086 2 1 1 80 5 85852913 85852935 AGATTTCACCTCACATGCG 58 85852851 85852870 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 AABR07042226.1 ENSRNOG00000058521 ENSRNOT00000088194 1 1 1 82 X 150660900 150666257 CATATAAGTTACACGGCAGCAG 60 150660839 150660858 ACACTCATCAGTCACAAGGT 59 Novel Rattus norvegicus 81 AABR07009919.1 ENSRNOG00000049341 ENSRNOT00000071473 2 1 1 62 2 116993012 116993030 CTTTGTAGACCAGGCTGGA 59 116993056 116993074 CAGCTCTTCAGAGGGAGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060963.2 ENSRNOG00000059176 ENSRNOT00000086458 3 1 1 87 4 101909425 101909807 CTCTGGATCCAGGAAACCC 60 101909858 101909876 AGATGGAGGCTGATTGTCC 59 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000035046 ENSRNOT00000053169 3 1 1 60 1 226610483 226610501 ACCGATCTCATCTGATCCT 57 226610441 226610460 TCCCATCCATGTACTAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047212.1 ENSRNOG00000060477 ENSRNOT00000090963 2 1 1 63 5 24145766 24145787 GATGGACTAGAAATCCATTGGG 59 24145811 24145829 CTCTTACCGTAGTCGGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061908 ENSRNOT00000088275 3 1 1 60 1 190338271 190338289 TTCGGTCAAGGGTATACGA 58 190338313 190338331 TCGAGAGCTTGTTTGGAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5f1 ENSRNOG00000016000 ENSRNOT00000076556 2 1 3 98 2 208416314 208419705 GGTCCAGGTTTGTATAATGGT 58 208416236 208416254 TCAGGAAGAGGTGGTAGAG 57 Novel InUTR Rattus norvegicus 81 Atp5f1 ENSRNOG00000016000 ENSRNOT00000076666 1 1 3 113 2 208420017 208420035 CTTCGCAGACAATGCTGTC 60 208416279 208416297 GAAAGACCCTTGTTGCCTG 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000061568 ENSRNOT00000079065 3 1 1 60 6 8579243 8579265 GATACAGAGAAGATTAGCATGGC 59 8579205 8579223 GAACGCTTCACGAATTTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snoZ6 ENSRNOG00000057911 ENSRNOT00000088985 1 1 1 60 20 11478100 11478118 GAAGTTGCCTCAATCCGAG 59 11478142 11478160 AGACAGATAAGACGCCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC121204.2 ENSRNOG00000059138 ENSRNOT00000083129 3 1 1 60 5 59113521 59113540 TCGTTTCCAGATGAGAATCC 57 59113480 59113500 AACAATCTCTGAAGGACTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017768.3 ENSRNOG00000051485 ENSRNOT00000086722 2 1 1 60 15 30853227 30853249 TGCACCTATCAGACTACTTACTC 59 30853265 30853287 CACTGAGATATTGCACATACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA63 ENSRNOG00000051501 ENSRNOT00000090781 2 1 1 60 14 107604182 107604203 TAAATACATCACCATCTCTGCC 58 107604222 107604242 TTAGAAACCAAGTGTCTCTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058210 ENSRNOT00000077410 1 1 1 60 5 144877388 144877412 GACTATGTCTTTGCTCAGTATTCTG 60 144877352 144877373 ATGCTAGGCTCTAATCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07015555.1 ENSRNOG00000045758 ENSRNOT00000072473 2 1 1 107 14 63295543 63295561 GACAGAGAAGGAGGGAAGG 59 63295454 63295473 TAATTCACATGCACATGGCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07059067.1 ENSRNOG00000055910 ENSRNOT00000083917 3 1 1 96 4 2972630 2972650 TTCTTCTGACTCACTTGGC 57 2972710 2972728 ATTGAAGATGGTCCAGGGA 58 Novel Rattus norvegicus 81 AABR07052085.1 ENSRNOG00000005951 ENSRNOT00000007800 2 1 1 60 3 35748879 35748898 GGCAATTACAACAACCAGTC 58 35748920 35748939 TGCTTCCAAAGTTTCCTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07006727.1 ENSRNOG00000052057 ENSRNOT00000082874 2 1 1 60 1 250300927 250300946 GAACTGGAGGAAGACTTTGC 59 250300886 250300904 CCAGCTCTTTGATCCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054997 ENSRNOT00000084153 3 1 1 60 10 21386907 21386925 ACTCCATGTGCATTTCTCC 58 21386865 21386884 GTAGACTGGTCCTCTTCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027235.1 ENSRNOG00000051931 ENSRNOT00000079788 3 1 1 81 17 20619325 20619344 CTATAGCCAATGCCTACGTG 58 20619386 20619406 GTGTGATGTGTTGAGAGTGTG 60 Novel DesignNoJunctionSingleExon, InUTR Rattus norvegicus 81 AABR07028839.1 ENSRNOG00000059656 ENSRNOT00000081311 1 1 1 95 17 88037338 88037356 TTTCCAAGACTCCTCCCTG 59 88037415 88037435 CCACTTCCAAAGCAGAACG 60 Novel Rattus norvegicus 81 AABR07019663.1 ENSRNOG00000057509 ENSRNOT00000089541 3 1 1 60 13 759822 759842 TCCATCATGTTCTAGTCACAC 58 759860 759882 ACTAGCATCTCTACTTCTTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059797 ENSRNOT00000087663 1 1 1 60 13 80950664 80950685 CTAGAGTAATTGCAGGTGTGAC 59 80950625 80950644 CTCTTCTCTGCCACCTACTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053853 ENSRNOT00000085219 1 1 1 60 1 235254000 235254020 CTAGAAAGTGTGACTTCAGCC 59 235253960 235253981 CTTTCAAGACCCTGTAAATGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054845.1 ENSRNOG00000049107 ENSRNOT00000070970 3 1 1 78 3 171784406 171784424 CTTCTTCGTCCAGGTCAGG 60 171784346 171784365 GCTTCAAACTCCGAAGACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Y_RNA ENSRNOG00000053822 ENSRNOT00000091174 1 1 1 60 7 80088053 80088071 CTGGTTGGAAGGTAGTGAG 57 80088011 80088030 GAGTTCAATCTGTAGCGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070043.1 ENSRNOG00000052640 ENSRNOT00000080835 2 1 1 64 8 45701549 45701568 TTAGTGCTATCTTCATGGCC 58 45701502 45701522 TACTCTCACACCAGCATCG 59 Novel DesignNoJunction Rattus norvegicus 81 U6 ENSRNOG00000053563 ENSRNOT00000083084 1 1 1 60 3 20410591 20410612 CAGTACAGAGAATTAGCATGGC 59 20410552 20410572 GGAATGCTTCAAGAATCTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA15 ENSRNOG00000055094 ENSRNOT00000091248 2 1 1 60 3 129328783 129328803 AAGACTTTGCTGATACACTCC 58 129328743 129328763 TCTCCAATAAGGGCTACTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07020835.1 ENSRNOG00000036368 ENSRNOT00000054487 3 1 1 63 13 43385466 43385484 ACAACCAACGCAAACTGAC 60 43385511 43385529 AGTGAGGCACTCAAAGAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054004 ENSRNOT00000092124 3 1 1 60 20 32909199 32909218 CTAGTACTCTGCAGGTCCTG 59 32909238 32909259 TGCAATCTATTAATGCACAGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059847 ENSRNOT00000080474 2 1 1 60 4 183569644 183569662 AGAGAAGATTAGCGCATGG 57 183569602 183569623 TATGGTACACTTCAGAATCTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07034739.1 ENSRNOG00000058590 ENSRNOT00000086514 1 1 1 80 11 86094798 86095951 AGATTGACTGTCCTAGACCA 58 86095993 86096012 GTCAGTCTTGAGCTCTTCAG 58 Novel Rattus norvegicus 81 AABR07029803.1 ENSRNOG00000057038 ENSRNOT00000089390 3 1 1 80 10 52023656 52023679 AGATTTCACCTCACATGCGA 60 52023595 52023615 TTCCTCTTTCTCCACAACCTC 60 Novel Rattus norvegicus 81 AABR07022014.1 ENSRNOG00000043772 ENSRNOT00000069039 2 1 1 76 13 102731776 102731794 TAAAGGCTGGACCTAGACG 59 102731718 102731736 TAAAGGCCGGAGTTAGACG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000041721 ENSRNOT00000063474 3 1 1 60 15 87221766 87221784 ACCTCAGAAGCTAAGCAGG 59 87221808 87221826 ATTAAAGGGAGGTCTCCCA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC105628.1 ENSRNOG00000028442 ENSRNOT00000008636 1 1 1 85 3 78697661 78697684 CTGCCAATTGATAAATGTGCTG 59 78697728 78697748 ACCTCAGAATTCCTGAGAGTG 59 Novel Rattus norvegicus 81 7SK ENSRNOG00000061278 ENSRNOT00000088859 2 1 1 60 10 57895861 57895882 CAAATAGAGGAGGATCAAGGGT 59 57895901 57895921 TGTTTAGAGGTTCTAGCAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130866.2 ENSRNOG00000059679 ENSRNOT00000079547 1 1 2 80 4 113979374 113979514 TTTCAAGAACAAAGGCGATCTG 60 113979550 113979573 ATCTCAGTATCCTGAATCTGTTCC 60 Novel Rattus norvegicus 81 Metazoa_SRP ENSRNOG00000061397 ENSRNOT00000086684 2 1 1 60 5 119052481 119052500 TGGGTGGTTATTTACTCTGC 58 119052440 119052460 ACGTAATGACAAGGATCTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA43 ENSRNOG00000053480 ENSRNOT00000083911 1 1 1 60 3 4092854 4092874 ATTTCTACGCTCAGTGTTCAG 59 4092814 4092833 AAATGTCAGGCTACAAACCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0713.5 ENSRNOG00000051245 ENSRNOT00000075848 2 1 1 60 X 70421890 70421908 GCAGGAGGCTAAGAATGGA 59 70421848 70421867 CCTGTTTCCTTCCAACTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060764 ENSRNOT00000081276 1 1 1 60 13 66565006 66565026 ATGCAGAGAAGATTAGCATGG 58 66564966 66564985 GGAACACTTCACGAATTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052250 ENSRNOT00000079163 3 1 1 60 13 6651628 6651647 TTAGTAAGTGGCACAGAGGA 58 6651587 6651606 ATGTTCACAGGTGAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 snosnR60_Z15 ENSRNOG00000059509 ENSRNOT00000083292 3 1 1 60 13 78854992 78855011 TAGTTCAGCAGACGTGACTC 60 78855032 78855052 CAGATACATCAGATAGGAGCG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029809.1 ENSRNOG00000060742 ENSRNOT00000083485 2 1 1 80 10 52478492 52478515 GAGATTTCACCTCACATGCG 59 52478431 52478450 TCCTCTTTCTCCACAACCTC 59 Novel Rattus norvegicus 81 SCARNA4 ENSRNOG00000055592 ENSRNOT00000085844 3 1 1 60 10 104714041 104714059 AGACTCTGCCGATACACTC 59 104713999 104714018 TTTCTCAGTAAGGGCTGCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052610 ENSRNOT00000091875 3 1 1 60 10 69763740 69763759 GAACCTCAAAGCAAACTCTC 57 69763699 69763718 TTCTTGGAATCAGTCCTCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000061368 ENSRNOT00000084326 1 1 1 60 5 148105191 148105213 GGAGATAACCACTATCAAGAAGG 58 148105153 148105173 CCTGCGTATAATAGATCAGCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057353.1 ENSRNOG00000047073 ENSRNOT00000074732 1 1 1 60 7 67140019 67140039 GTACTGCACTCCTGTAATTCC 59 67139979 67139999 TTTGAACTCCCAATCATCCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053254 ENSRNOT00000086636 1 1 1 60 20 46535683 46535701 CTACCCTTGCTTGGAAGTG 58 46535641 46535660 GCTTGTTTGGAGATTTCTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052295 ENSRNOT00000088285 3 1 1 62 3 38037665 38037683 GGCTACTGTGTCACATGTG 59 38037708 38037727 CTGAGTGTAGACATAGCCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042874.1 ENSRNOG00000055181 ENSRNOT00000085429 3 1 1 60 19 13139775 13139795 TAGAAGACCAAGATCAAGGTG 57 13139815 13139835 AGACACATTGAAAGGCTTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002683.1 ENSRNOG00000054609 ENSRNOT00000078462 3 1 1 91 1 80982566 80982589 GATCTGGGACACAGCAGAG 60 80982642 80982662 TCTTGGTGATGTCATACACGA 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000052252 ENSRNOT00000084314 3 1 1 60 13 80079629 80079647 GAGAGGCTACGTCTATGCT 58 80079670 80079689 TTGGGCTGCTAATCATTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028009.1 ENSRNOG00000061359 ENSRNOT00000089943 2 1 1 60 17 52755779 52755798 CCTAAGCAATCCAAAGGCTC 59 52755817 52755839 CTCTTTCTCCTTGATAGGATCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057547 ENSRNOT00000081872 2 1 1 60 6 28838202 28838221 CAAACAAGCTCTCCTTACCT 58 28838243 28838262 GTGGTTCTAACTTCAGGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07054266.1 ENSRNOG00000005920 ENSRNOT00000007780 1 1 1 93 3 145831638 145831657 CTTCCATTTGCGGAACGAG 60 145831714 145831732 ACAGACCATCATCCCATGC 60 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000055571 ENSRNOT00000085498 1 1 1 60 3 34555962 34555982 GCCAATAGAGATAATGCAGGT 58 34556001 34556022 TTTGTGTCACAGACTAATCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA68 ENSRNOG00000054041 ENSRNOT00000078163 3 1 1 61 15 4158934 4158952 AGTGCTTTGTTGCCTTTGG 60 4158891 4158910 TGTAGAACTTCCTGATTCGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000059617 ENSRNOT00000086312 3 1 1 60 10 106084727 106084748 CAGTCAAGGGTATATGAGTAGC 58 106084769 106084787 TCTTGAGAGCTTGTCAGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC096239.4 ENSRNOG00000061301 ENSRNOT00000087532 1 1 1 60 13 52265993 52266012 TACGTCTTGCAGAAATTGCC 59 52265952 52265971 AGTAAGTGCTTGTCAAACGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056452 ENSRNOT00000088371 2 1 1 60 X 11888069 11888088 GGAACCGTACAGAGATTAGC 58 11888028 11888049 ATGCTTCACCAACTTGTATGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036964.1 ENSRNOG00000048500 ENSRNOT00000072719 3 1 1 60 X 8059532 8059552 GGAAGATTTGCTCTTCTTTGC 58 8059492 8059510 CCAAGGATCTAGCAGTTGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000059077 ENSRNOT00000083530 1 1 1 60 7 137917812 137917833 CTTTATCTTTGGTGTGCAATGG 59 137917773 137917795 ATAGGCTACATACACTACCAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032413.1 ENSRNOG00000048770 ENSRNOT00000074068 3 1 1 63 18 64511582 64511601 CCCAGAGTCCTAACAATGTC 58 64511623 64511645 TCTCTTCATGTATGAGGTCTCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097153.2 ENSRNOG00000049523 ENSRNOT00000074021 2 1 1 60 2 2510226 2510248 TACTGGAACTTATCAGTTGCC 58 2510268 2510288 TCTGTGTTCTTGTACTCTGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07043573.1 ENSRNOG00000046882 ENSRNOT00000054555 2 1 1 61 19 29481768 29481789 CTTGCTTAATGCTAAGAAAGCG 59 29481811 29481829 CTAGCCTTTAACGGCTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044282 ENSRNOT00000069549 1 1 1 77 6 109955207 109955225 TTTAGGTCTATGGCCTCGC 59 109955148 109955166 ATCCAAGTACCAACCAGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052317 ENSRNOT00000087654 3 1 1 60 15 64346715 64346735 TCAAGGGTATACAAGTAGCTG 57 64346754 64346775 GTACCTTGAGAACTTGTTTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000060452 ENSRNOT00000085791 2 1 1 62 15 55520390 55520409 CAGTATCGTAGCCAATGAGG 58 55520347 55520368 GTGGTCTTGACTTTAGATTAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RNaseP_nuc ENSRNOG00000055467 ENSRNOT00000085952 2 1 1 60 20 19191580 19191598 ATCCAGATGTAAAGCCCAC 57 19191619 19191640 GAGACACATCTGTTCAAGAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034530 ENSRNOT00000052653 1 1 1 60 20 33366702 33366725 CAATCTCATATGATCTCAGAAGCC 59 33366665 33366686 TCTCCCATTCAAGTACTAACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061962.1 ENSRNOG00000061170 ENSRNOT00000082988 3 1 1 60 4 155169761 155169781 AGACTCCCATTATGATCCAGG 59 155169801 155169823 TTATGAGTTCTCTGCTTGGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07060156.1 ENSRNOG00000027692 ENSRNOT00000038047 2 1 1 60 4 60054390 60054410 GTACAAAGAACAACCAGCTCC 60 60054429 60054450 CTAGTGAAGCCACATTTATCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054830 ENSRNOT00000081076 3 1 1 90 6 49954995 49955014 CCTAGAACCATTGCAAGTGC 60 49955067 49955085 TCTGAACACTGAGCACAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102551497 ENSRNOG00000057156 ENSRNOT00000085882 3 1 1 60 11 29069344 29069362 GTGGCTATGGTAGCTATGG 57 29069386 29069404 GACCAGTACCTTCTACAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000060766 ENSRNOT00000088684 3 1 1 60 18 31515559 31515578 CTGATAGCATCTGGTCTTGG 58 31515596 31515619 CCTCCTATCCAAATATTAACCAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056661 ENSRNOT00000082206 1 1 1 60 3 20347760 20347778 GTGCTCACTTTGGCATCAC 60 20347718 20347737 GGAGCCATGCTAATTCTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000052908 ENSRNOT00000081038 3 1 1 63 7 140132879 140132897 TTCAAGCAGACGCCTAGAG 60 140132834 140132853 CTCTGTTGAAGTCCAGAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044429 ENSRNOT00000069696 3 1 1 60 15 46039590 46039609 GGAAACTAAACAGGTCAGGC 59 46039631 46039650 CCCAGAATCTCCAGGTAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135822.2 ENSRNOG00000055182 ENSRNOT00000083977 2 1 1 60 3 150303180 150303198 GGACATTCTGCTTTCAGCC 59 150303138 150303160 CTTGTTCTTCTTGATCTCGACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000057897 ENSRNOT00000085806 1 1 1 60 X 41163566 41163586 GAGTCCCTGAGGACATAAGAG 59 41163526 41163545 CTGACAGGTATCTGAGTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052139 ENSRNOT00000080561 1 1 1 60 18 78641836 78641854 TGAAATTGGACCGACACAG 58 78641875 78641896 AATGTGTACATCATCCTTGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SCARNA21 ENSRNOG00000056350 ENSRNOT00000079660 1 1 1 63 3 93979998 93980017 TATGCACTGTTGTGGGAGAG 60 93980043 93980061 ATTGTGAGGCTAGGACAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056815 ENSRNOT00000081001 3 1 1 60 18 74069180 74069199 GACATTGCAATGTGATTGCT 58 74069221 74069240 ATACCTCTCCTCTTTGCCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000053120 ENSRNOT00000089649 1 1 1 61 15 53961176 53961197 GTGATACCATGGTCATAAAGGT 58 53961216 53961237 GGAAATCACATAAGGCAAATCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07060678.1 ENSRNOG00000049140 ENSRNOT00000071086 1 1 1 80 4 89252358 89252380 AGATTTCACCTCACATGCG 58 89252423 89252442 TTCCTCTTTCTCCACAACCT 59 Novel Rattus norvegicus 81 U1 ENSRNOG00000061580 ENSRNOT00000088601 2 1 1 60 18 63230087 63230105 TTGCACTCCGGATGTACTG 60 63230045 63230065 TAAGTAGTCGAGCTTCCTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07032441.1 ENSRNOG00000046113 ENSRNOT00000075102 1 1 1 60 18 65750959 65750977 CTTACAAAGCTCCGCTTGC 60 65751001 65751019 ACTGCTTCCTAACGTCGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053681.1 ENSRNOG00000043539 ENSRNOT00000068806 3 1 1 60 3 120143643 120143663 CCTTGAACTCAGAGATTCACC 59 120143603 120143621 AGCACATGCCTTTAATCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060289 ENSRNOT00000090777 1 1 1 60 X 23467627 23467646 GAACCTCCAAACAAGCTCTC 59 23467586 23467604 TTGGAAGCTTGACTACCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060957 ENSRNOT00000084449 3 1 1 61 5 27757691 27757709 GTCTGAGCAAAGTGGAGAG 58 27757729 27757752 CAATCAGTCAGATGTTCATAGGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056405 ENSRNOT00000084719 2 1 1 60 18 74993295 74993315 GATACCATGACCTTGAAGACG 59 74993336 74993355 TCATAAAGAGTGCAGAGGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC130624.1 ENSRNOG00000046397 ENSRNOT00000073929 2 1 1 60 X 15536949 15536968 TTTGTTATGTGTTCCTGGGT 57 15536908 15536928 ATGAGTTTGAAGCTAGCTTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057379 ENSRNOT00000077940 2 1 1 60 X 33333975 33333998 GATAATCTGGCTACAACATCTGTC 60 33334016 33334035 CCAGATCAGGTGAATCAACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052105 ENSRNOT00000089755 2 1 1 60 X 131743025 131743043 AGAATGATCTGGCTGGGAC 59 131743066 131743085 AGATCTGGCAAATCAACCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026842.1 ENSRNOG00000031349 ENSRNOT00000047795 2 1 1 60 17 2920798 2920816 TCAAAGGGTTCATCTCCGT 59 2920837 2920858 CCTCATGATTCTTTCACTTCTG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000040532 ENSRNOT00000062285 3 1 1 60 7 52188790 52188808 CATGTCACCGTGAATGCAC 60 52188831 52188850 AAGGCCTAACTGCAATTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000058874 ENSRNOT00000091019 2 1 1 60 7 139421220 139421239 GTACTCTCCTGCTAGAACCT 58 139421260 139421280 TCTTGTGTTACATGCGTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051786 ENSRNOT00000083260 2 1 1 60 4 17801311 17801331 CTTCGGTCAAGGGTATATGAG 58 17801353 17801371 TCAGAGCTTGTTTGGAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056247 ENSRNOT00000083070 1 1 1 60 18 40542273 40542292 TTCGGTCAAGGGTATACGAG 59 40542315 40542333 TTGAGAGCTTGTTTGGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061296 ENSRNOT00000079804 3 1 1 60 18 39796105 39796124 TGAGAAACTTGGTGACAGAG 58 39796145 39796165 ACATAGGTTAGAACATGGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA33 ENSRNOG00000051715 ENSRNOT00000089757 2 1 1 60 18 63622299 63622319 TCTAGTCTGCTTAGCTCTGTG 59 63622259 63622277 GGCATTACTATTGCCAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054276 ENSRNOT00000088801 1 1 1 60 15 88744269 88744287 CTGCTCATTTCAGCAGCAC 60 88744310 88744329 GGCCATACTGATCTCCTCTG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054276 ENSRNOT00000088801 2 1 1 61 15 88744269 88744287 CTGCTCATTTCAGCAGCAC 60 88744312 88744330 GGGCCATACTGATCTCCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058015 ENSRNOT00000079771 1 1 1 60 X 5193985 5194005 TTACTTCAGCAGCACATATGC 59 5193945 5193966 TATGGGTCATGCTAATCTTCTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061830 ENSRNOT00000085740 1 1 1 60 6 128084079 128084099 GGAGACAGGCTATGTCTACAC 60 128084039 128084060 TGCTTGCTTACTTTCAGATGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065705.4 ENSRNOG00000060552 ENSRNOT00000090133 1 1 1 103 6 139719184 139719286 TTCCAACCTGTGTCCTGTC 60 139719099 139719117 TGAGAACCCAGAGACAGTG 59 Novel Rattus norvegicus 81 SNORD113 ENSRNOG00000053761 ENSRNOT00000081960 1 1 1 60 6 133834490 133834508 ATTGATGATGGCCACTCGT 60 133834530 133834550 GGACCTCAGAGACTTAGTCAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115418.1 ENSRNOG00000043746 ENSRNOT00000069013 1 1 1 60 15 4295140 4295160 GGGTAGGCTTTGAGATTTCAG 59 4295181 4295200 CAGCAGGAAGAAAGAGTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043101.1 ENSRNOG00000055046 ENSRNOT00000084965 3 1 1 60 19 21049309 21049330 TGGGAAGATTGTTGTGAATCTC 59 21049348 21049369 TCTAGGGCTTATAACTCCACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060234 ENSRNOT00000077987 1 1 1 72 5 164490575 164490593 CTCCAGCAGCACATATCCT 59 164490629 164490647 CATGTTCTCCTTGTGCAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060234 ENSRNOT00000077987 3 1 1 75 5 164490575 164490593 CTCCAGCAGCACATATCCT 59 164490632 164490650 TTGCATGTTCTCCTTGTGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000056893 ENSRNOT00000090399 3 1 1 60 15 84177285 84177305 AGATAGGATGAAGCATGTGCA 60 84177245 84177264 ATTTCAGGAGAAATCGCACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000053495 ENSRNOT00000089058 1 1 1 60 15 109415296 109415314 AGAGACTTTGACAGCCCAG 59 109415336 109415356 CATATAGGAGAGCTGAGTGGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053454 ENSRNOT00000087446 2 1 1 60 4 11286614 11286632 CTCTTCTTTCACCACCCAG 58 11286653 11286674 CATTGCTATAGGATGAGGACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053473 ENSRNOT00000077395 2 1 1 60 15 13869146 13869165 GCAGAGAAGAGTAATGTGGC 59 13869105 13869123 TGTGGACTGCTTGGTTAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053473 ENSRNOT00000077395 3 1 1 60 15 13869148 13869169 CAATGCAGAGAAGAGTAATGTG 58 13869109 13869127 GACTGCTTGGTTAGGTCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000052891 ENSRNOT00000083867 2 1 1 60 20 51862797 51862816 GTACTCTGAATTGCTGTCCC 58 51862756 51862777 TCCACTACCACAAATTATGCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044437 ENSRNOT00000069704 2 1 1 60 20 55529410 55529430 CTCAGTGTAGTCTGATCTTGG 58 55529450 55529470 TCCCACTCAAGGATTAACCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053809 ENSRNOT00000085136 3 1 1 60 5 128628225 128628246 TACTAAAGTTGGTCCGATACAG 58 128628186 128628206 GCCTATCCTATCACTCATGAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07058514.2 ENSRNOG00000037185 ENSRNOT00000056134 2 1 1 83 7 121773598 121773618 AAGACCCTTGACTGCACTC 60 121773665 121773683 CTTGATCCTCTCCTGGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AC120246.1 ENSRNOG00000048000 ENSRNOT00000071810 2 1 1 60 19 25668834 25668853 TATGTAGACCAGGCTAGCCT 60 25668876 25668894 AATACTCAGGAGGCAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC115670.2 ENSRNOG00000060002 ENSRNOT00000077475 2 1 1 60 17 45745902 45745923 GAAAGATTACTTCAAAGCAGGG 58 45745863 45745884 AAACTCAAATACCTCTCGACCA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000034799 ENSRNOT00000052922 3 1 1 60 9 64068871 64068889 CGATCTCGTCTGATCTCGG 60 64068829 64068849 CCTCCCATCCAAGTACTAACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U3 ENSRNOG00000054676 ENSRNOT00000086482 3 1 1 83 19 55874991 55875009 GAAACAGCAAACAGCATCC 58 55874926 55874944 GATCGTTAGTGGCAAGAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA50 ENSRNOG00000051773 ENSRNOT00000081852 3 1 1 60 19 9716525 9716547 GATGTCTTACTTGTAGCTCAAGG 59 9716566 9716585 GAAGAGCCCAGTTCTTTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000052699 ENSRNOT00000083058 2 1 1 60 19 11151098 11151117 GCATAGTGGCAGTATTGCAG 60 11151057 11151079 CTTCTATTAGCAATAGCCTCGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA13 ENSRNOG00000061393 ENSRNOT00000091576 3 1 1 60 11 84548931 84548949 GTAGCCTTTCCTTTCCCTG 58 84548889 84548909 CTTTGTTACTTATGCAGCTCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056081 ENSRNOT00000077538 1 1 1 60 18 8703265 8703285 ACTCACTAGAACCTCTAAGCA 58 8703225 8703244 AGCCTTAACCACTTTCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059030 ENSRNOT00000086381 2 1 1 60 5 59230816 59230838 GGAACGATACAGAGAAGATTAGC 59 59230778 59230796 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059918 ENSRNOT00000087014 1 1 1 60 18 56799787 56799806 TTGAAGTGGGAACAATACGA 57 56799746 56799764 TTGTCATGTGGGTCATCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054912 ENSRNOT00000079319 2 1 1 60 11 87547839 87547860 ATACAGAGAAGATTAGCATGGC 58 87547881 87547899 GGAACGCTTCACGAATCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000054471 ENSRNOT00000085417 2 1 1 60 19 28930875 28930897 GGAACGATACAGAGAAGATTAGC 59 28930917 28930935 CTTCACGAATTTGCGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000061329 ENSRNOT00000086484 3 1 1 60 18 36161916 36161938 GATACAGAGAAGATTAGCATGGC 59 36161957 36161976 GAACGCTTCATGAATTTGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044715 ENSRNOT00000069982 1 1 1 60 18 64976412 64976431 TGCATGTACCTGATTCTGTC 58 64976371 64976389 AAGAACTAACCAGGCCCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07068712.1 ENSRNOG00000056280 ENSRNOT00000088483 2 1 1 60 9 116297940 116297959 CTGCACTACTGTATGAGCTG 58 116297899 116297920 CTTCAGGAAATCGATTCCTGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043271.1 ENSRNOG00000057212 ENSRNOT00000090756 3 1 1 82 19 26944633 26945892 ATCCATGAAGAACAGGCCA 59 26944569 26944587 GAATTGACATGACCGCCTC 59 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000055656 ENSRNOT00000087571 1 1 1 60 6 5216258 5216277 TGTACTGATCAGCAGGTGAC 60 5216295 5216318 ATAGGTTAGAACACTGAGCATAGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA44 ENSRNOG00000056879 ENSRNOT00000079344 2 1 1 61 20 11934173 11934191 AGAGACTTTGACAGCCCAG 59 11934130 11934150 ACATATAGGAGAGCTGAGTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060768 ENSRNOT00000085428 2 1 1 60 7 5602200 5602220 TCTGTTACACTGTTGATCCCT 59 5602242 5602260 ACACCTGCCTAATGATCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC122630.1 ENSRNOG00000060740 ENSRNOT00000090086 1 1 1 60 4 41902686 41902704 TTGTAATGAGACCCAGTGC 58 41902728 41902746 TGTGAAACGCTGAACTCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056611.1 ENSRNOG00000055726 ENSRNOT00000079193 1 1 1 60 7 32193188 32193208 GTTTACGGCAAAGTCAATACC 58 32193228 32193248 CAGCATACTGTGTCTTCATCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000055213 ENSRNOT00000078767 1 1 1 104 7 144090360 144090378 ATCCACAGGACAGGTACAG 58 144090446 144090464 TCACCTCTAGAGGTGGTCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07046866.1 ENSRNOG00000060709 ENSRNOT00000085321 2 1 1 61 5 10125141 10125159 AGACCTGCTGATGCTACAG 59 10125182 10125202 CAGAATAGAAAGGCTCACCAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059692 ENSRNOT00000081956 3 1 1 60 9 42296680 42296700 GGAGCTATACAGAGAAGACCA 59 42296719 42296740 CTTCAGGTATTTGCATGGAGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056085 ENSRNOT00000083136 1 1 1 60 11 27642511 27642532 TGAGAAACCAAAGAAAGAGGAG 58 27642472 27642494 GATGTTCATAGGTGAGAACACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027128.1 ENSRNOG00000061064 ENSRNOT00000079489 2 1 2 80 17 14943492 14943511 TGTACGAAGAAAGGAACAGG 58 14942043 14943449 CTCCTGGGTATGCTTATGC 58 Novel Rattus norvegicus 81 U1 ENSRNOG00000061201 ENSRNOT00000080461 3 1 1 67 6 75622883 75622901 TTATCCATTGCACTCCGGA 59 75622834 75622852 TTATGCAGTCGAGTTTCCC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07065772.4 ENSRNOG00000057681 ENSRNOT00000090704 1 1 1 68 6 140586985 140587004 CAGCCATGTATTACTGTGCA 58 140585094 140585112 TTGTGATGCCGAAGTAGGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07015500.1 ENSRNOG00000057727 ENSRNOT00000089645 1 1 1 63 14 59811543 59811567 AAGCACTTTACTTGAGCAACTC 60 59811591 59811609 TTTGGAGATTCTGGTGCCT 59 Novel DesignNoJunction Rattus norvegicus 81 AC134651.1 ENSRNOG00000028529 ENSRNOT00000037907 2 1 1 61 2 205504434 205504452 AAACACTACACAGGACCAG 57 205504478 205504496 GGCTGCTTCTAATGCTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07063248.1 ENSRNOG00000053778 ENSRNOT00000080972 3 1 1 70 6 24200594 24200616 CACATACACTCACACTCATACAC 59 24200546 24200565 CGAGTGTGAGTATAGGTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053635.1 ENSRNOG00000024256 ENSRNOT00000031588 2 1 1 141 3 117766145 117766163 CCTCTTCAAGTATCGTCCG 58 117766268 117766287 GGAAAGGGAGGATAGATGGG 59 Novel DesignNoJunction Rattus norvegicus 81 7SK ENSRNOG00000052504 ENSRNOT00000078492 1 1 1 60 7 50726344 50726363 ATAAACGCATGCTTCATCCA 58 50726303 50726321 ACCAGAGATTGGTCCTCCT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000061413 ENSRNOT00000084653 3 1 1 60 4 160416189 160416210 CTTCCTCACTTACTGTTCATGC 59 160416227 160416249 GGTCATCCTCTTTAATCAAGTGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07064716.1 ENSRNOG00000028058 ENSRNOT00000034507 1 1 1 60 6 91581074 91581095 TGGTATTGAAGAGGTGAATGTG 59 91581035 91581053 AGGGTTGTTAAAGTGGGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043141.1 ENSRNOG00000033819 ENSRNOT00000045060 2 1 1 60 19 23832798 23832818 AAGAAGCCTAAGAAGTCAACC 58 23832836 23832858 CATCTTCTACTGGATGTGTAAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000054341 ENSRNOT00000082101 1 1 1 60 4 101803228 101803246 ACACATGTGTCAGTAGGTG 57 101803186 101803207 TGTCAGAATACTGATCAGAGAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07056621.1 ENSRNOG00000041450 ENSRNOT00000063203 3 1 1 70 7 32983215 32983234 CTATGTGGACTCTAGCTGCC 60 32983164 32983182 ATGTCTACACTGGCTGAGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC124874.2 ENSRNOG00000057667 ENSRNOT00000090254 3 1 1 77 13 82125799 82125817 TCTTTCTCCACATCCTCGC 60 82125859 82125878 GATTTCACCTCACACCAGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07011733.1 ENSRNOG00000061317 ENSRNOT00000089083 1 1 1 60 2 167607458 167607479 CTTCACCAACAGAATACAAGAG 57 167607419 167607440 TTCTATGGAATCTTCTGCTCCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051804 ENSRNOT00000091959 3 1 1 60 4 93889308 93889329 CATTGCAGGTATGTCATATGAG 57 93889269 93889287 CATTTGCATAGCCTTTCCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000052281 ENSRNOT00000079210 3 1 1 62 7 126031120 126031138 ACAGAGATTAGCATGGGCC 60 126031163 126031182 TAAATATGGAACGCTTCGCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07061586.1 ENSRNOG00000036454 ENSRNOT00000054565 3 1 1 60 4 134985219 134985237 GGCTATAACCAGCACAGAC 58 134985259 134985279 TGCTCAAAGAGATACTCACCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027387.1 ENSRNOG00000041434 ENSRNOT00000063187 2 1 1 69 17 27700538 27700557 AGATCTCTGTGAGTTCGAGG 59 27700589 27700607 TTTCTGTGTAGCCTTGGCT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07028336.1 ENSRNOG00000057298 ENSRNOT00000077094 2 1 1 60 17 65937656 65937676 ACCATAGCTGTCTTCAGACAC 60 65937616 65937636 AAGCTGACTTCTGTAATGGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07033465.1 ENSRNOG00000055484 ENSRNOT00000084837 2 1 1 114 11 22852251 22852272 GTATTACCTCAACCAGGGC 58 22852347 22852368 TCTTGAGTATTTGTCATCTGGG 58 Novel Rattus norvegicus 81 SNORA17 ENSRNOG00000059499 ENSRNOT00000081274 2 1 1 62 17 88628607 88628625 GTGTCAGTATGTGGCAGAG 58 88628563 88628583 TGTTCATAGGTCAGAACTCCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042669.1 ENSRNOG00000031076 ENSRNOT00000047925 3 1 1 61 19 2611359 2611377 AAAGTACCACTTGCTCCTG 57 2611316 2611336 AAATTCTCCACCAGATCTGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA72 ENSRNOG00000058556 ENSRNOT00000080287 1 1 1 60 10 23480885 23480905 GCGAATATTCTCGCTGTTCTG 60 23480845 23480866 ACTATAGCGAATGTTTAGCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07057421.1 ENSRNOG00000047216 ENSRNOT00000072394 2 1 1 60 7 70287318 70287337 TGGCTGGATTCAAGTAATCC 58 70287356 70287378 GTAATCAAGAATAGGCCTCACAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07021625.1 ENSRNOG00000057144 ENSRNOT00000089675 2 1 1 69 13 82121325 82121343 TCTTTCTCCACATCCTCGC 60 82121272 82121290 CTCACACCAGTCAGAATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07047089.1 ENSRNOG00000055063 ENSRNOT00000082188 1 1 1 80 5 18964137 18964155 CCAGTGTACCTCTTTGGCT 59 18964195 18964261 TCTAAGACTCTGACCAAGTTGTC 60 Novel Rattus norvegicus 81 Rn60_1_1360.1 ENSRNOG00000051226 ENSRNOT00000076150 2 1 1 60 1 134922193 134922214 ATCTGAAACAACCTTAACAGCC 59 134922235 134922253 ACGTTTGTGTCTCTGTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_1_1360.1 ENSRNOG00000051226 ENSRNOT00000076150 3 1 1 60 1 134922245 134922263 CACAAACGTGATGTCAGGA 58 134922286 134922305 TTTCCAGTGATGCGTATACC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA73 ENSRNOG00000054564 ENSRNOT00000084102 3 1 1 62 4 101074718 101074737 TGAATTCTGCTCCTATGCAC 58 101074675 101074693 TGTCTCCTCAGTCCTCCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063703.1 ENSRNOG00000046279 ENSRNOT00000075437 2 1 1 60 6 42778260 42778278 AGAAGGGTACATCGAACGG 59 42778300 42778320 AATTTCAAACTGCCTGTGGTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 ENSRNOG00000048017 ENSRNOT00000036375 1 1 1 80 7 18793033 18793251 CTGGATTTCAGACTCCAAAGG 59 18792973 18792993 CTGATTCTTTCTCCTGGAGTC 58 Novel Rattus norvegicus 81 SNORA70 ENSRNOG00000060059 ENSRNOT00000089500 1 1 1 60 10 65833127 65833147 GTCCTGGCTACAAATAACAGC 59 65833087 65833105 AACCCATGTAGGGAACAGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000056239 ENSRNOT00000088700 2 1 1 60 4 33537182 33537200 TGATTCAGACTGTCCACCT 58 33537140 33537161 TATGTATGGGATGTTGAAGGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07047750.2 ENSRNOG00000059308 ENSRNOT00000086284 2 1 1 61 5 45733895 45733913 CACCAACAATGGAGGAGTG 59 45733938 45733958 ATAGGTGACAGCAAATGCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07042789.1 ENSRNOG00000023805 ENSRNOT00000030597 1 1 1 60 19 8943823 8943841 GCCTGAAGTGTTACTGCTG 59 8943781 8943800 AGTTTCTCAATCAGGTCCAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07036642.1 ENSRNOG00000050192 ENSRNOT00000071941 1 1 1 60 12 51674416 51674439 AGTAGATGGATTGTGTAGATGAGG 60 51674379 51674399 GCACTTGATAAGTGGCTAACC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC098022.1 ENSRNOG00000048170 ENSRNOT00000074095 3 1 1 91 7 20075979 20075998 CAAGAGGAAAGATGGAGCTG 58 20076082 20076100 ATGCTTTATCCTTTCCCGC 58 Novel DesignNoJunction Rattus norvegicus 81 U1 ENSRNOG00000056357 ENSRNOT00000079611 2 1 1 61 10 25515995 25516013 ATCATCCATTGCCCTGGAC 60 25515952 25515970 GCCACAGATTATCGGTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 uc_338 ENSRNOG00000059318 ENSRNOT00000085365 2 1 1 62 8 22715691 22715709 GAGGAGCCACCTCTAAAGG 59 22715735 22715753 AGAAGCTGAGTTGAGTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060043 ENSRNOT00000083141 2 1 1 60 8 130537181 130537201 TGCTTAGTCAAGAGGATAACC 57 130537141 130537161 TATATCCTTGACCGAAGAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07066529.2 ENSRNOG00000053989 ENSRNOT00000090330 1 1 1 62 9 10840914 10840932 AAGAAGCTCCCTGTTTGCA 60 10840870 10840888 AAGAAGAGATGGGAGTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000055105 ENSRNOT00000087996 1 1 1 66 10 74742650 74742668 TTATCCATTGCACTCCGGA 59 74742698 74742716 TATGCAGTCGAGTTTCCCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07042323.1 ENSRNOG00000005681 ENSRNOT00000007487 1 1 1 60 X 152781259 152781277 ATCGCCTGTTCTGTAACCA 59 152781217 152781235 GAATGGACTGGATCTGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA48 ENSRNOG00000053138 ENSRNOT00000086632 3 1 1 60 9 77733386 77733404 GGCAGTCCTTTGTTCATCC 59 77733344 77733364 AAGCATAACACAGCTTTGACC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071742.1 ENSRNOG00000047621 ENSRNOT00000073760 1 1 1 60 8 128719693 128719711 TGTCCTGGAACTCACTCTG 59 128719732 128719753 CAGAGGCAGGTAAATTTCTGAG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 LOC680442 ENSRNOG00000042736 ENSRNOT00000064626 1 1 2 118 10 87819467 87819485 TGACCATCTACTGCAGCAC 60 87820033 87820051 TTCACAGCAAGTTGGAAGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07010306.1 ENSRNOG00000052009 ENSRNOT00000078570 3 1 1 83 2 131957234 131957254 GGGTCAGTGCCATTTATAAGC 60 131957170 131957189 CAAATGCGTGAAGCAGGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07021691.2 ENSRNOG00000059709 ENSRNOT00000072984 1 1 1 113 13 85624868 85624886 AAAGAGGCAACTTGAGCTG 58 85624965 85624983 CTATGTCTTTGTGGCCACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07037536.1 ENSRNOG00000056810 ENSRNOT00000085588 3 1 1 81 X 23246345 23246363 TGTTATTGGCATGCCAGTG 59 23246280 23246303 GCAAACATTCAGAATGTTTCGG 60 Novel Rattus norvegicus 81 AABR07071223.1 ENSRNOG00000037129 ENSRNOT00000056005 1 1 1 60 8 105526639 105526657 CTCTGTGTAGCCTTGACTG 58 105526681 105526699 CTTAGTTCAAAGCCAGCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000052830 ENSRNOT00000088511 3 1 1 60 8 118440373 118440392 GAGTTGGAATAGGAGCTTGC 59 118440332 118440350 GGAGGTACTGCAATACCAG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_10_0892.1 ENSRNOG00000053448 ENSRNOT00000077603 1 1 1 80 10 89260452 89260471 TCACTTGAAACTCATTCCCA 57 89260514 89280797 CAGCACAGATGAGACTACC 57 Novel Rattus norvegicus 81 5S_rRNA ENSRNOG00000045006 ENSRNOT00000070273 3 1 1 60 13 79439201 79439222 TGACCTGATCTAGTCTGATCTC 58 79439162 79439182 CATTCAAGTATTAACCAGGCC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC107580.4 ENSRNOG00000059412 ENSRNOT00000082045 3 1 1 60 X 123807334 123807352 GGACACTGAGAAGGAACGA 59 123807376 123807394 CTCCTGGATCTTCTGGCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000053734 ENSRNOT00000086034 3 1 1 60 8 75469110 75469131 GGTAGAACACTTACTGTACAGC 59 75469151 75469170 TTGCTTTGTGATGAGATCCA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07002384.2 ENSRNOG00000046037 ENSRNOT00000073243 3 1 1 83 1 72360923 72360944 AAGACTGACAGAAACCTTCAG 58 72360860 72360880 ATTTGGGAGTTGTAGTATGGG 58 Novel Rattus norvegicus 81 AABR07054547.1 ENSRNOG00000008136 ENSRNOT00000010732 3 1 1 95 3 159452573 159452599 CTGTCACCCAATGTTCTTAAGAG 60 159452500 159452519 ATCTTCTGGGCATTGGTCTC 60 Novel Rattus norvegicus 81 AABR07030603.2 ENSRNOG00000052459 ENSRNOT00000085552 3 1 1 72 10 95431204 95431223 GCATAAAGCTTGTCTCACCC 59 95431151 95431172 GCATTCTCTTACTATACAGCGC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07069524.1 ENSRNOG00000049314 ENSRNOT00000073310 1 1 1 80 8 26659498 26659520 AGATTTCACCTCACATGCG 58 26659436 26659455 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 AABR07056013.1 ENSRNOG00000009072 ENSRNOT00000044978 3 1 1 60 7 18280169 18280190 CTGTCTAGTCTATGATGAAGCC 58 18280208 18280229 AGCAATCTCTTGTTGAATCTGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052082 ENSRNOT00000081792 1 1 1 60 8 95064692 95064711 GTTATCAGTAGGTGGCAGAG 58 95064651 95064672 CCATAGTTCAGAACACTGAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000057842 ENSRNOT00000089663 1 1 1 60 8 18517585 18517606 TGGCTTTATAGAATACAGGAGG 57 18517624 18517645 GAATCACAACTACTCCTCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000053088 ENSRNOT00000089896 1 1 1 81 8 48799220 48799238 GAGACAGAACTGCCTCCTG 60 48799157 48799175 GTGTCATTCTTGTGCAGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 5S_rRNA ENSRNOG00000044880 ENSRNOT00000070147 3 1 1 60 8 64903644 64903662 ATTTGGGAAGTTGAGCAGG 58 64903602 64903621 ATTCACATCTTGTCTTCCGT 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052416 ENSRNOT00000081352 1 1 1 60 8 50872139 50872157 ACATGTGTAGGTGGCAGAG 59 50872179 50872199 TCAACTGTCCACAGAAATGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000061858 ENSRNOT00000083567 3 1 1 60 8 85317347 85317366 CAGTAGGTGACAGAAAGGAG 57 85317306 85317326 GATATTCACCGGTCAGAACAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA62 ENSRNOG00000055465 ENSRNOT00000090176 2 1 1 60 8 128808851 128808870 GTTAGAGCTTGGAGTTGAGG 58 128808891 128808911 GCACACTACCTACACTTAGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07052664.1 ENSRNOG00000053741 ENSRNOT00000091115 1 1 1 80 3 68305198 68305220 AGATTTCACCTCACATGCG 58 68305136 68305155 TTCCTCTTTCTCCACATCCT 58 Novel Rattus norvegicus 81 SNORA20 ENSRNOG00000056888 ENSRNOT00000086106 3 1 1 61 8 76903405 76903429 GTGATAAGAGTGGTTATACACATGG 60 76903445 76903466 TCCATCTCCATGTATAATGGCC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070207.1 ENSRNOG00000056320 ENSRNOT00000091086 1 1 1 80 8 57847542 57847564 TAAACCAATTTCTGGACACCTG 59 57861156 57861174 TTGAGCTCAGAGGCTAGTC 59 Novel Rattus norvegicus 81 AABR07068975.1 ENSRNOG00000053294 ENSRNOT00000071404 2 1 1 60 8 4118280 4118299 CCTTCTAAGATTGGTGTCCC 58 4118320 4118340 TCAGAATAGTCTTTGCCACAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07026359.1 ENSRNOG00000060898 ENSRNOT00000088219 2 1 1 80 16 73758563 73759369 TCACAATTACTGCAGAAACCC 59 73759410 73759429 AACTCCGTGGTATACTTCCC 59 Novel Rattus norvegicus 81 AABR07052557.2 ENSRNOG00000057935 ENSRNOT00000078456 3 1 1 60 3 61623277 61623297 GGCTGTCGTAAACTCATTACC 59 61623237 61623257 CAAGGTGTCATAAAGCCATCG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA25 ENSRNOG00000060240 ENSRNOT00000091104 1 1 1 60 3 121317844 121317865 GAGCTTGTTAGACTCTTAACCA 58 121317885 121317904 TGGACGACATCAATCTTTGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA64 ENSRNOG00000060026 ENSRNOT00000077474 1 1 1 60 3 83631634 83631653 TGTGACTTTCGTACTGGGAG 60 83631593 83631613 TGAAGCCAATCCAAAGTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC132741.1 ENSRNOG00000059369 ENSRNOT00000090188 2 1 1 80 3 160679302 160679321 TGAAGTCCATCTTCTTCAGC 58 160679363 160679610 TTGTCCCACCATAGATTCCT 58 Novel Rattus norvegicus 81 AC095852.2 ENSRNOG00000051712 ENSRNOT00000087837 1 1 1 60 3 153521746 153521767 CAATACAGTACAGTGCAGTACC 59 153521786 153521806 GTACTGCACTGTACTGTATGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07014690.1 ENSRNOG00000054903 ENSRNOT00000079570 3 1 1 81 14 26654440 26654461 ATCAGCTACATGTAGATGATCC 57 26654500 26655638 CAGTCTGAGGAGATGTATAGGA 58 Novel Rattus norvegicus 81 AABR07031247.1 ENSRNOG00000052385 ENSRNOT00000086877 1 1 1 80 18 5585536 5585558 CTACACCTTCCTTCAAGAAACTG 59 5585597 5585734 TTTAAAGATGCTGCCTGTCC 59 Novel Rattus norvegicus 81 AABR07031247.1 ENSRNOG00000052385 ENSRNOT00000086877 2 1 1 81 18 5585536 5585558 CTACACCTTCCTTCAAGAAACTG 59 5585597 5585735 CTTTAAAGATGCTGCCTGTCC 60 Novel Rattus norvegicus 81 AABR07031251.1 ENSRNOG00000053296 ENSRNOT00000090524 2 1 1 67 18 5839158 5839176 AGTAGAGACACTGTGGCTG 59 5839004 5839127 GGTTGTTCTGAAGACTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07014855.1 ENSRNOG00000054855 ENSRNOT00000079827 1 1 1 60 14 33960755 33960773 AGAAACAGTCCTCCTTCCT 58 33960713 33960731 AAATCTGTGCTTGCTTCCT 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000173.1 ENSRNOG00000059137 ENSRNOT00000082859 2 1 1 80 1 2762086 2762104 GTTCCGAGCCGAAATTCTG 59 2751376 2762045 TTCTGGGAGATTCTTCATCCTC 59 Novel Rattus norvegicus 81 AABR07015040.1 ENSRNOG00000056778 ENSRNOT00000084119 2 1 1 60 14 46286648 46286667 GACTCACAAACAACCGACAG 60 46286795 46286814 CTGATCTTCAGAAACGACGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07060595.1 ENSRNOG00000054078 ENSRNOT00000088866 1 1 1 70 4 83332366 83332384 CTCACTGAGGAGTGGTCTG 59 83380032 83380050 TTTAACTGGTCTGGCCTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07060620.1 ENSRNOG00000052491 ENSRNOT00000081555 2 1 2 101 4 86699588 86737137 GCTTCTCCCGATCTAAGTC 57 86699505 86699523 TGTCCTGGACAATTGTTGG 58 Novel Rattus norvegicus 81 AABR07000433.1 ENSRNOG00000055660 ENSRNOT00000082324 3 1 1 91 1 12403208 12409367 AGAGACTTCGGTGATCAGAC 59 12409418 12409439 CTTACTCTTGCATAGTTCACCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07047194.1 ENSRNOG00000058576 ENSRNOT00000081862 3 1 1 80 5 23391928 23391946 TCGAAACAGTCTGTTGCAG 58 23391990 23392611 ATGACCAGACGTCTTTGAC 58 Novel Rattus norvegicus 81 AC128394.2 ENSRNOG00000056019 ENSRNOT00000085926 1 1 1 111 1 12757921 12757940 TAGAAGGAAAGACGGTGCTG 60 12683096 12757847 CTTCACGACCTTCCCTCTC 60 Novel Rattus norvegicus 81 AABR07047256.1 ENSRNOG00000059459 ENSRNOT00000079809 2 1 1 80 5 25339604 25340938 CAGTACAGCCAAGATCCCA 59 25340980 25341000 GGTACTAACTTCTGTCATGCC 59 Novel Rattus norvegicus 81 AABR07000451.1 ENSRNOG00000053331 ENSRNOT00000084609 2 1 1 112 1 13351264 13351283 GAAGCAGAAAGATGATGCCA 59 13354109 13354128 TCTCTTTCTCCCTGATTCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AC134757.1 ENSRNOG00000061697 ENSRNOT00000082379 1 1 1 60 14 71504978 71516457 AAGCTTACACGAGTCCAGG 59 71516480 71516499 TATACCTGTTTCCACACGGA 59 Novel DesignNoJunction Rattus norvegicus 81 AC134757.1 ENSRNOG00000061697 ENSRNOT00000082379 2 1 1 61 14 71504978 71516457 AAGCTTACACGAGTCCAGG 59 71516481 71516500 CTATACCTGTTTCCACACGG 58 Novel DesignNoJunction Rattus norvegicus 81 AC134757.1 ENSRNOG00000061697 ENSRNOT00000082379 3 1 1 61 14 71504978 71516457 AAGCTTACACGAGTCCAGG 59 71516480 71516500 CTATACCTGTTTCCACACGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07030091.1 ENSRNOG00000054016 ENSRNOT00000088428,ENSRNOT00000079528 3 2 2 81 10 67111281 67127724 CTCTGGAACTTACAGAATGGA 57 67111220 67111238 GAGAAGAGCTGGTCTTCTG 57 Novel Rattus norvegicus 81 AABR07061155.1 ENSRNOG00000058418 ENSRNOT00000083209 3 1 1 83 4 107202355 107209827 GTAGGAAGATCTTCAAAGCCC 59 107209871 107209890 CAGACAGTACCTTCCAAGGA 59 Novel Rattus norvegicus 81 AABR07030235.1 ENSRNOG00000053740 ENSRNOT00000087117 3 1 1 83 10 77080669 77080687 CATGGATTTCCGAAGCTGG 59 77080734 77081945 GCTTCCTTCCACATCTCCA 59 Novel Rattus norvegicus 81 AABR07047840.1 ENSRNOG00000055803 ENSRNOT00000091267 2 1 1 80 5 49959596 49981649 GATCACTGAGGATTCCTAGGA 58 49981691 49981709 GTTTCAGCGTCTCCAACTC 59 Novel Rattus norvegicus 81 AABR07030257.1 ENSRNOG00000052162 ENSRNOT00000077728 3 1 1 91 10 78220602 78223572 GGACTACTCTGCTGGATGG 59 78223626 78223645 TGTTCATCACAGGGCTACAG 60 Novel Rattus norvegicus 81 LOC102550026 ENSRNOG00000058323 ENSRNOT00000080713 1 1 1 80 5 51150927 51183619 GAGCCCTTGAAAGAGATGAC 58 51150866 51150885 GGAGAAACAGTGTTCCTTCC 59 Novel Rattus norvegicus 81 AABR07061333.2 ENSRNOG00000055980 ENSRNOT00000082483 2 1 1 88 4 116858262 116862107 TGTTTCAGCTGTTCCATGAC 59 116862156 116862176 ACTTTGAATGCTTGGGAAGAG 59 Novel Rattus norvegicus 81 AABR07015966.1 ENSRNOG00000055092 ENSRNOT00000086499 3 1 1 82 14 88184245 88184269 CTGTTCTAATTCCACACTTACTCTG 60 88184307 88185540 AGTTTCTGAGATCCCTTCTGC 60 Novel Rattus norvegicus 81 AABR07016058.1 ENSRNOG00000056762 ENSRNOT00000084669 1 1 1 92 14 93085197 93085215 TAGCTGCCACATGTACTGG 60 93085268 93086734 TTAATGTTCAGGTTCCATGGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07016058.1 ENSRNOG00000056762 ENSRNOT00000084669 3 1 1 101 14 93085188 93085206 ACATCTCTGTAGCTGCCAC 60 93085268 93086734 TTAATGTTCAGGTTCCATGGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07071851.2 ENSRNOG00000053999 ENSRNOT00000078878 2 1 1 80 1 21405970 21434787 GTGGATCTTTATAAAGGCAGGA 58 21405911 21405930 TGTGAGTTAACCCTTTCTGG 58 Novel Rattus norvegicus 81 AABR07061384.1 ENSRNOG00000058483 ENSRNOT00000091313 3 1 1 81 4 120994864 120994885 CAGAACAAAGACTCATGTAGGA 58 120993721 120994822 ATGCAATGAGTGAAGCTGG 59 Novel Rattus norvegicus 81 AABR07048624.1 ENSRNOG00000052703 ENSRNOT00000092085 3 1 1 71 5 85124148 85137775 TGATTCTAGCTGAACCGGG 59 85137807 85137828 AGGATCACCACTCATCATAAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07061465.1 ENSRNOG00000056263 ENSRNOT00000081330 2 1 1 93 4 126984174 126985784 GAACCCATCAGTTTCAGCAG 59 126985840 126985858 ATCAGTCCAGAACCATCCG 59 Novel Rattus norvegicus 81 AABR07030568.7 ENSRNOG00000059036 ENSRNOT00000082506 1 1 2 82 10 93203369 93204402 CAAACTCTTCACAGGCCAG 59 93204445 93204466 CGTTAGGATTGAGTTTAATGCC 58 Novel Rattus norvegicus 81 AABR07048966.1 ENSRNOG00000059515 ENSRNOT00000088835 3 1 1 80 5 98793893 98812087 AAGTACAGGATGTCGGAACC 60 98812129 98812148 CTTCAGAAGTCCCAAATGGG 59 Novel Rattus norvegicus 81 AABR07061807.1 ENSRNOG00000052299 ENSRNOT00000080698 1 1 1 60 4 146294992 146296369 ACCCATGAAGGAAGGACTG 59 146294950 146294969 ACTGAATTCAGCAAGCAAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07049002.1 ENSRNOG00000060976 ENSRNOT00000080603 2 1 1 80 5 99320051 99347211 CTTCATTAATAAGGGCACTTCAGG 60 99319994 99320012 CACTGATCACCTCCAACCT 59 Novel Rattus norvegicus 81 AABR07049033.1 ENSRNOG00000055709 ENSRNOT00000089350 3 1 1 80 5 100777502 100812142 GGTCCATAAGCTCATCAGCT 60 100812185 100812203 TCAGTGTCTTCTTCACGCA 59 Novel Rattus norvegicus 81 AABR07016722.2 ENSRNOG00000060106 ENSRNOT00000080488 2 1 1 81 14 112606342 112606361 GCAAGAGCATATGACAGGAG 59 112606405 112607686 AATGGGATGCCTCATTCCT 59 Novel Rattus norvegicus 81 AABR07049033.2 ENSRNOG00000057129 ENSRNOT00000086258 1 1 1 60 5 100854671 100854689 CTGCTATGACATGTCAGCC 58 100852800 100852819 CAATGGACTTCTCAAGGGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07049079.1 ENSRNOG00000053914 ENSRNOT00000077312 1 1 1 80 5 103669495 103669515 GCTAATTGACTGCTAGCTGAG 59 103669554 103684804 TTGAAACAGAGTCATCATCTCC 58 Novel Rattus norvegicus 81 AABR07030660.1 ENSRNOG00000053434 ENSRNOT00000080349 2 1 1 82 10 98177819 98177837 CGGAGATGATTGAACTGCA 58 98177882 98188426 GGATCAGAGACACTTTCCTG 58 Novel Rattus norvegicus 81 AABR07030690.2 ENSRNOG00000061583 ENSRNOT00000086379 2 1 2 82 10 99706396 99706414 AATCTGTGAACACAAGGCC 58 99691230 99706352 TGGAAATACCTTGCAGATGTG 59 Novel Rattus norvegicus 81 AABR07049350.1 ENSRNOG00000060443 ENSRNOT00000082950 3 1 1 116 5 118035708 118035726 TGACCACATCCACTACAGC 59 118037219 118037237 CAGTGAGGAACCAGCTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AC118434.2 ENSRNOG00000053967 ENSRNOT00000085994 3 1 1 63 10 102861673 102861692 CTTGTGTCATCACTTGCCAC 60 102863824 102863843 CATGGCGGATGATATCAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AC121719.1 ENSRNOG00000057875 ENSRNOT00000079525 3 1 1 60 5 118820856 118820874 GTGCCTCTCAAGATCTACC 57 118851975 118851993 CATATCTCACCTTGCCACC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07017189.1 ENSRNOG00000058519 ENSRNOT00000089717 1 1 1 82 15 16637949 16638841 GTCTACAGTGATGCTTTCCTG 59 16637887 16637907 GGTGAACATCATCTTCCTCTG 59 Novel Rattus norvegicus 81 AABR07017227.1 ENSRNOG00000056328 ENSRNOT00000081094 3 1 1 91 15 18256999 18257017 AGTAAGCCTTGAGAGGAGG 58 18257072 18257311 GAGGCATGATTGATCCTGC 59 Novel Rattus norvegicus 81 AABR07062298.2 ENSRNOG00000052108 ENSRNOT00000083020 1 1 1 80 4 167558407 167558429 GGTAATACCTACTCAAGCTTCCT 60 167558465 167560781 TTCTTATCTAGTAAGTGACCGCC 60 Novel Rattus norvegicus 81 AABR07001358.1 ENSRNOG00000053056 ENSRNOT00000081556 2 1 1 97 1 40255592 40255616 GCTCTGATCCATTTAGATATGTCTC 59 40232414 40255539 CAGCTTCTTGATGAGTTACGG 59 Novel Rattus norvegicus 81 LOC102548428 ENSRNOG00000054173 ENSRNOT00000079775 3 1 1 81 15 23984837 23985078 GGACTCTAATGGCAATATTGC 57 23984776 23984797 ACTAGAATTCCAAGATGTCCTC 57 Novel Rattus norvegicus 81 AABR07045680.1 ENSRNOG00000056040 ENSRNOT00000085825,ENSRNOT00000085220,ENSRNOT00000082897 3 3 3 83 20 56198701 56199211 CTGGTTATGCAAATCAGAACCT 59 56199255 56199273 CTCCAACCTCTTCCAGCTC 60 Novel Rattus norvegicus 81 AABR07049695.2 ENSRNOG00000051636 ENSRNOT00000089245 2 1 1 83 5 133710458 133710477 CTAGAGGAGAGTGTGATCCG 59 133710522 133711051 ACTTGTTTCTGGGTCCTCTC 59 Novel Rattus norvegicus 81 AABR07001455.1 ENSRNOG00000053507 ENSRNOT00000088141 1 1 1 80 1 45621354 45621372 GTGCACATTTGGTCAGCTC 60 45621414 45622040 ACTCACGAAATCATGAGTCCT 59 Novel Rattus norvegicus 81 AABR07062513.2 ENSRNOG00000052942 ENSRNOT00000086702 2 1 1 81 4 180828669 180828688 AACTAGAGACCACAAGTGGA 58 180820130 180828626 GACAGAGAACTTCTGTGAGG 58 Novel Rattus norvegicus 81 AABR07049695.3 ENSRNOG00000052757 ENSRNOT00000077735 2 1 1 89 5 133717836 133720410 CCAGAGTCTATGTGTAGTTTCCA 60 133720454 133720477 GCTTCCTGGATTCTATATCTTCCT 60 Novel Rattus norvegicus 81 AABR07049760.2 ENSRNOG00000060378 ENSRNOT00000077862 1 1 1 132 5 136545171 136545189 TTCTGCTTCTCAGCTGGAC 60 136543609 136543627 TCACAGAAGAGGGAAGCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07001493.1 ENSRNOG00000058258 ENSRNOT00000086823 1 1 3 67 1 47534126 47534144 AGAGACCTCAGGAACACTG 58 47537476 47537494 TCCAATTTCTCCCACCTCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07001493.1 ENSRNOG00000058258 ENSRNOT00000086823 3 1 3 68 1 47534126 47534144 AGAGACCTCAGGAACACTG 58 47537477 47537495 TTCCAATTTCTCCCACCTC 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07017770.2 ENSRNOG00000061293 ENSRNOT00000089143 3 1 1 92 15 30883560 30883802 TTTGTCTGGATGTAATGTGGC 59 30883855 30883874 TATGAACACTCCAGGGTGAC 59 Novel Rattus norvegicus 81 AABR07017825.5 ENSRNOG00000060541 ENSRNOT00000089248 2 1 1 60 15 31497866 31497885 CCCTGGAGTGTTCATATGAG 58 31497994 31498015 GCTGGAAGATTACAGAATAGCG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07062823.1 ENSRNOG00000056860 ENSRNOT00000081006 2 1 1 102 6 10767024 10767042 ACTTCTTCCTCATCAGGGC 59 10765966 10766960 GAATACAGGAATTGCAAACCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07049884.1 ENSRNOG00000054370 ENSRNOT00000084152 2 1 1 100 5 142429261 142429279 TTCCTGTGGCAGACATCTC 59 142429341 142433581 ATCATGCTGCTTCCTTTATCC 59 Novel Rattus norvegicus 81 AABR07001610.1 ENSRNOG00000055136 ENSRNOT00000082026 2 1 1 80 1 54224086 54287680 TTCAGCATCAAATACCTGAGG 58 54224026 54224045 TACGTGCAGGTGATTTAGAC 58 Novel Rattus norvegicus 81 AABR07018116.1 ENSRNOG00000054194 ENSRNOT00000081842 1 1 1 80 15 40684509 40684529 AGAAACCAAAGCTCAAGAACC 59 40681578 40684472 GCTGGATTTCTCTGTACATAAGAC 59 Novel Rattus norvegicus 81 AABR07032141.1 ENSRNOG00000061456 ENSRNOT00000084077 3 1 1 89 18 49224777 49227203 TGGATTCCTTGCTAAGCCA 59 49224706 49224724 GTTTGTCAGCTGTCAGCAG 60 Novel DesignNoJunction Rattus norvegicus 81 AC111687.1 ENSRNOG00000052926 ENSRNOT00000090395 1 1 1 80 15 41619171 41619190 CCATGTTGTAAAGTGGGAGG 59 41617404 41619130 GTATTGTTCCTTCTGGGAGAG 58 Novel Rattus norvegicus 81 AC111687.1 ENSRNOG00000052926 ENSRNOT00000090395 3 1 1 80 15 41619169 41619189 CATGTTGTAAAGTGGGAGGTG 59 41617403 41619130 TGTATTGTTCCTTCTGGGAGAG 60 Novel Rattus norvegicus 81 AABR07032162.1 ENSRNOG00000061355 ENSRNOT00000084357 3 1 2 81 18 50434573 50435149 TGTTTGCCTAATGCTCCTC 58 50434510 50434528 GTGGAGTCTCAGGAATGTC 57 Novel Rattus norvegicus 81 AC132635.1 ENSRNOG00000061631 ENSRNOT00000089689 2 1 1 88 15 43742817 43742835 GTTCCCGAATGCTTGACTC 59 43742884 43746855 GGTCACATACTTTGATCTCCTC 58 Novel Rattus norvegicus 81 AABR07001764.1 ENSRNOG00000058989 ENSRNOT00000086654 2 1 1 89 1 56745996 56746014 AGATGTTGAATGCTGGCAC 59 56732610 56745945 CCAGAGCTTCTAGAAGTTGGA 59 Novel Rattus norvegicus 81 AABR07001780.1 ENSRNOG00000056729 ENSRNOT00000087541 1 1 1 87 1 57667193 57667212 CTAATATCGCCTCCTTGGCA 60 57667262 57667376 TCTTGGGTTTCCAGCTCTG 60 Novel Rattus norvegicus 81 AC118858.2 ENSRNOG00000060555 ENSRNOT00000088774 1 1 1 80 18 51713466 51716659 CCATGACAGAGAAGTCTTAAAGAG 59 51716697 51716716 TACCTTGGTTGACTTTGGTG 58 Novel Rattus norvegicus 81 AABR07050265.1 ENSRNOG00000052537 ENSRNOT00000087936 1 1 1 60 5 158641392 158641410 GCAACTTCAAGACAGACGG 59 158641350 158641368 GTTATGCCACTTACCCGGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07063636.1 ENSRNOG00000052000 ENSRNOT00000078407 2 1 1 85 6 38339526 38339984 GTTTATCAGGTAGCCACAAGAG 59 38339462 38339480 ACTGAGTTGGCTAGGAAGC 59 Novel Rattus norvegicus 81 AABR07018342.1 ENSRNOG00000060189 ENSRNOT00000086746 2 1 1 69 15 53092981 53092999 TATGCAATGTGTAGGGCTG 58 53095992 53096010 AGATAGCCATGGCTACTGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07018390.1 ENSRNOG00000060737 ENSRNOT00000078552 1 1 1 87 15 55406333 55406351 CAACTGGACCCAGAATGAG 58 55405124 55406285 CCTTACTGTGTTGATTTCTTCC 57 Novel Rattus norvegicus 81 AABR07050466.1 ENSRNOG00000059002 ENSRNOT00000086073 2 1 1 60 5 166262794 166262812 AAGCCTACCGAAGACACAG 59 166259303 166259322 GAATTGGGAAACCTCCTGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07002677.2 ENSRNOG00000060041 ENSRNOT00000081418 3 1 1 108 1 80378583 80378601 ATCCCTGGCAGAAAGACTG 59 80378673 80382575 CAGGATCTCCAGCACTGAC 60 Novel Rattus norvegicus 81 AABR07063804.1 ENSRNOG00000054273 ENSRNOT00000077239 3 1 1 104 6 49617417 49617436 GCTACCTTTGTCTCCATGGA 60 49617503 49617900 TGTAGTTCATCTGGCCCTG 59 Novel Rattus norvegicus 81 AABR07002805.1 ENSRNOG00000056831 ENSRNOT00000078361 3 1 1 113 1 85574476 85574494 AAGTCCATCTGTCCTACCC 58 85567967 85567985 ATGGAAGAGGACCAGACAG 58 Novel DesignNoJunction Rattus norvegicus 81 AC111292.1 ENSRNOG00000052912 ENSRNOT00000091786 3 1 1 81 3 3955902 3956355 ACCAGGACTGAATGCTGAG 59 3956400 3956418 TCCTGATTGGACTCAGGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07019088.1 ENSRNOG00000057291 ENSRNOT00000084024 2 1 1 82 15 87558243 87558261 TAGTGCTGTCACTAGCACC 59 87558307 87561108 TCTTCAGATCAAGGCTCGC 60 Novel Rattus norvegicus 81 AABR07064099.1 ENSRNOG00000053849 ENSRNOT00000079885,ENSRNOT00000090557 3 2 2 90 6 64609027 64609045 GTTTGCAGAGGTGACAGTG 59 64593182 64608973 TGTCTTCCAGTGCTCACTG 60 Novel Rattus norvegicus 81 AABR07002898.1 ENSRNOG00000054776 ENSRNOT00000084059 1 1 1 78 1 88612296 88612314 GAGACGGAAGTGGTGAGAG 60 88612999 88613017 GAGGACAAGAGGGAGAGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AC115341.2 ENSRNOG00000059168 ENSRNOT00000081056 1 1 1 95 3 9109354 9109372 TACGGGAAGATTGGTGGAG 59 9115109 9115127 AGTTCACAGGATTCCTGTG 57 Novel DesignNoJunction Rattus norvegicus 81 AC132699.1 ENSRNOG00000052323 ENSRNOT00000080821 3 1 1 64 18 79312133 79312151 GGATGGATGGGTGTCTCAG 60 79311562 79311585 GTCAAATCCTATTCTTGTCCTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07072853.2 ENSRNOG00000056129 ENSRNOT00000078431 2 1 1 113 3 9945850 9945868 CTGGATCGTCTCAACACGT 60 9942984 9945773 ACCATTGCATTTGCACCTG 60 Novel Rattus norvegicus 81 AABR07032758.1 ENSRNOG00000052976 ENSRNOT00000089151 3 1 1 83 18 80197365 80200996 AGCCCATGATTATCTGTAAGAG 58 80197303 80197321 GATGTCTCCCTGACATCTG 57 Novel Rattus norvegicus 81 AABR07051438.1 ENSRNOG00000060208 ENSRNOT00000082735 2 1 1 80 3 11277975 11277995 GTTAGGACCTTCCCTATGCTC 60 11278035 11278803 GTCAGGATGTGTCTTGAAGGA 60 Novel Rattus norvegicus 81 AABR07051485.1 ENSRNOG00000059802 ENSRNOT00000080186 2 1 1 81 3 13825545 13837679 CAAGTCTAGTTGCAGCATGAC 60 13825484 13825502 TAGAAAGTTCGCCTCCTGC 60 Novel Rattus norvegicus 81 AABR07019437.3 ENSRNOG00000053672 ENSRNOT00000086016 3 1 1 81 15 105486018 105486038 AACTCTACACGATCCTTTCCT 59 105469188 105485975 CCCATGTTGAAAGGGATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07033274.1 ENSRNOG00000059180 ENSRNOT00000080572 3 1 1 151 11 14773399 14773417 AACATAATCTGCCCTCCCG 60 14772796 14773284 AAGGAAGACAAGCCCTGAG 59 Novel Rattus norvegicus 81 AABR07033301.1 ENSRNOG00000061487 ENSRNOT00000078592 1 1 1 60 11 16670859 16670878 GGATGGATACATGGATGGTG 58 16669870 16669888 GGAAAGTGCTTCGAGTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07020696.1 ENSRNOG00000056686 ENSRNOT00000081626 3 1 1 83 13 35886854 35887289 AAAGACATCACCAGCAGGT 59 35886789 35886807 CTTTCCATTCTGCACGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07020703.1 ENSRNOG00000057145 ENSRNOT00000086960 1 1 1 80 13 36027697 36027715 ACAGTGAGCAGACACAGAG 59 36027759 36029655 GCCCTGGTTAAACTCTGTG 59 Novel Rattus norvegicus 81 AABR07065049.2 ENSRNOG00000053831 ENSRNOT00000084251 1 1 1 60 6 105833823 105833842 TCGAAGGATTAGAACCAGCA 59 105823696 105823714 CTCCTCCTGGTGTAGTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07033570.1 ENSRNOG00000056730 ENSRNOT00000086624 3 1 1 81 11 28097668 28097686 GGTTGCATGTGAATCTCCA 58 28097728 28160355 GCTCCTTTATTCCCTAGTTGTC 59 Novel Rattus norvegicus 81 AABR07073245.1 ENSRNOG00000053035 ENSRNOT00000077192 1 1 1 80 6 108930422 108930444 CCTGAGAAATAGGAAGCAAACTG 60 108930484 108931456 TTCTTCCTCCAGTGGAGGA 60 Novel Rattus norvegicus 81 AABR07020809.1 ENSRNOG00000060765 ENSRNOT00000087036 2 1 1 67 13 41853431 41853449 GAGGAGGAAGAGGGAAGAG 58 41853479 41860701 ACCCTGAACATTAGTCTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07003349.1 ENSRNOG00000055821 ENSRNOT00000086165 1 1 1 64 1 106862816 106862834 CAAACAACAGTCCCTGGGA 60 106861356 106862789 TCAGCTCCCTTGTAAATGCT 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065190.1 ENSRNOG00000054202 ENSRNOT00000091539 1 1 1 61 6 114631026 114631044 CAGCATATTCCATGCCCTG 59 114599048 114599070 GTCATGAGTATATTCTGGGTCAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052327.1 ENSRNOG00000054061 ENSRNOT00000078922 3 1 1 96 3 47689079 47689098 TTAGCTGCTCTTAGCAAGCT 60 47689156 47690627 CTTCTTGATCTCACGCTGAC 59 Novel Rattus norvegicus 81 AABR07033925.1 ENSRNOG00000056146 ENSRNOT00000084814 1 1 2 80 11 44736562 44736583 ATGTCATTGAACTTCAGAGGGA 60 44668911 44736521 CATTGTTATCGGCAGCTGG 59 Novel Rattus norvegicus 81 AABR07052452.1 ENSRNOG00000059803 ENSRNOT00000078191 3 1 1 82 3 54949322 54949341 AGACAGGGATCCTTACACTG 59 54948369 54949278 AATCTGGAGTCGGAACACTC 60 Novel Rattus norvegicus 81 AABR07052504.1 ENSRNOG00000054287 ENSRNOT00000085218 2 1 1 87 3 58301891 58301909 GTGTCAGCTGAAGCAATGG 60 58301212 58301233 ACGCTTTGGTAGTTATTACCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052504.1 ENSRNOG00000054287 ENSRNOT00000085218 3 1 1 88 3 58301891 58301909 GTGTCAGCTGAAGCAATGG 60 58301211 58301232 CACGCTTTGGTAGTTATTACCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07052521.1 ENSRNOG00000052533 ENSRNOT00000088745 2 1 1 85 3 59272199 59272217 CCTTGTGAGGAGAGTGGAG 59 59268830 59272152 GGGTACTTGACCTGAATTGAG 59 Novel Rattus norvegicus 81 AABR07003751.1 ENSRNOG00000061194 ENSRNOT00000079357 3 1 2 86 1 118050497 118050516 AAAGATGCTGCTATGGTCAG 58 118050563 118076989 CACAGTGTAACCTTTATGGGA 58 Novel Rattus norvegicus 81 AABR07052541.1 ENSRNOG00000056244 ENSRNOT00000084655 3 1 1 94 3 60681735 60683038 TTTGGCTGCCAGTATTTGC 59 60683095 60683114 ACTTGTCCAGTAACTACGCT 59 Novel Rattus norvegicus 81 AABR07021610.1 ENSRNOG00000060416 ENSRNOT00000088845 3 1 1 81 13 81327797 81327817 GTCCTCATTGAAAGCATGACC 60 81327854 81330028 CATATGAGGTAGCAGAATGATACTG 59 Novel Rattus norvegicus 81 AABR07065406.2 ENSRNOG00000060830 ENSRNOT00000082112 1 1 1 97 6 125904609 125910922 TCTACTTCAGGCAAAGTGG 57 125904530 125904548 AAAGAACTTGCTCTGAGGG 57 Novel Rattus norvegicus 81 AABR07034464.1 ENSRNOG00000054633 ENSRNOT00000087385 3 1 1 60 11 72774790 72774811 GTATAAGCACATCAAGGAAGCA 59 72774317 72774335 GGAGATGCCTTCTGTCCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AC133316.3 ENSRNOG00000061032 ENSRNOT00000083671 3 1 1 74 6 127276978 127282051 GGCATTCAGCAGGTAAAGAG 59 127276923 127276942 GGATCACCTCTTTGCTTTGG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07052587.3 ENSRNOG00000053470 ENSRNOT00000078374 1 1 1 81 3 64154794 64154812 AAGACCCTCCCATCTTCAC 59 64154857 64155096 GAAACATGGTCCACAGCAG 59 Novel Rattus norvegicus 81 AABR07004085.1 ENSRNOG00000061295 ENSRNOT00000086546 1 1 1 83 1 124059667 124076269 TAAGAGCACAGCAATGGAG 58 124059602 124059620 TATTTACTGCCGCAGACAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07021762.1 ENSRNOG00000059969 ENSRNOT00000086490 1 1 1 93 13 90171085 90171414 TCCATTCGACAATTTAGGAGTG 59 90171468 90171486 CTGGCTATTGCATGCATCC 60 Novel Rattus norvegicus 81 AABR07034669.2 ENSRNOG00000056957 ENSRNOT00000086326 1 1 1 60 11 83375963 83376987 ATATTTGTCCTTCTGCTCATCC 58 83375924 83375944 CTCACATTCTTGGCCTTAGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065460.1 ENSRNOG00000053628 ENSRNOT00000079871 2 1 1 96 6 129372341 129378221 GTCCTTTGGATTCAGTCAGC 59 129378280 129378298 TGTGAGCTCTGACCAACAG 60 Novel Rattus norvegicus 81 AABR07065460.1 ENSRNOG00000053628 ENSRNOT00000079871 3 1 1 99 6 129372338 129378218 AGGGTCCTTTGGATTCAGTC 60 129378280 129378298 TGTGAGCTCTGACCAACAG 60 Novel Rattus norvegicus 81 AABR07004136.1 ENSRNOG00000061645 ENSRNOT00000082877 1 1 1 80 1 126694891 126694909 TGTCCACCTTGGATCTTCG 59 126692046 126694847 AGATTCAACCTGCTTGCCT 60 Novel Rattus norvegicus 81 AC115369.1 ENSRNOG00000056279 ENSRNOT00000082620 3 1 1 91 13 97920624 97920643 CAAGAAACATCTCGGATGGC 59 97920697 97921745 GTCTTTCTCAGGGACCTCC 59 Novel Rattus norvegicus 81 AC128915.1 ENSRNOG00000053197 ENSRNOT00000085177 2 1 1 147 13 98559815 98559833 TGTACAGAGTCCATGCCAG 59 98560443 98560461 GATGCCTTTCGCCTAAAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07021972.1 ENSRNOG00000061273 ENSRNOT00000080652 1 1 1 118 13 101364814 101364832 ACACTTTGGTGCTCTCCTC 60 101364914 101371464 GAATGTTTCCTCCCAAGCG 59 Novel Rattus norvegicus 81 AABR07065593.1 ENSRNOG00000056013 ENSRNOT00000088117 2 1 1 82 6 136000341 136000359 CATAAGCACCAAGTGTCCA 58 136002098 136002116 TAAGGCTTCTGAGAGCAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07004232.2 ENSRNOG00000054097 ENSRNOT00000085407 1 1 1 80 1 131688255 131688274 CCAGTTCTCATCATCTGAGC 58 131688317 131688663 GTACAACAGCCCTCAACTG 59 Novel Rattus norvegicus 81 AABR07022061.1 ENSRNOG00000061342 ENSRNOT00000078247 1 1 1 80 13 105281910 105281929 TACCTTCGTCTTCTCACTGC 60 105281966 105282746 GGAAGTCCATGTACTTTATTTCTGG 60 Novel Rattus norvegicus 81 AABR07065815.2 ENSRNOG00000056934 ENSRNOT00000088727 3 1 1 81 6 142602030 142602130 TAGCTGCAGGTGTCTACTC 59 142601967 142601986 GACAACTTCACTGAAGCACC 60 Novel Rattus norvegicus 81 AABR07053091.1 ENSRNOG00000059850 ENSRNOT00000082072 2 1 1 61 3 90965825 90974803 GCTGTACCTATTTGTTTCTGGT 59 90965785 90965803 CAGTTCGAGGCATTTAGCA 58 Novel DesignNoJunction Rattus norvegicus 81 AC135766.1 ENSRNOG00000053578 ENSRNOT00000083972 1 1 1 105 12 7594375 7594395 TCTACCACTGAGCTAAATCCC 59 7589959 7594308 CTTCCAGTCCTGTTCTGGG 60 Novel Rattus norvegicus 81 AABR07024473.1 ENSRNOG00000051956 ENSRNOT00000082788 1 1 1 152 16 624614 624632 AAATCGAACCGTGGTTTGC 60 618595 618616 CCTACCTACATGTGGAAATGGA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07065895.1 ENSRNOG00000055113 ENSRNOT00000085086 3 1 1 86 6 143879858 143879960 AGTCCCTGCATATGTCCTG 59 143879790 143879809 CAAGTCAGACTGAGGGTCTG 60 Novel Rattus norvegicus 81 AABR07004404.1 ENSRNOG00000060197 ENSRNOT00000088103 3 1 1 66 1 141675228 141679356 AAGAAGAAAGGCGGAAGGT 59 141679384 141679404 TCTTAACCTCTGAGCCATCTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07065897.1 ENSRNOG00000055127 ENSRNOT00000077224 2 1 1 80 6 144056453 144062400 ATCAAGACAATGGGTCAGCA 60 144062442 144062461 GTTCTCTGAAGCACAGTGTG 59 Novel Rattus norvegicus 81 LOC102548818 ENSRNOG00000056324 ENSRNOT00000079908 3 1 2 61 1 141944112 141944130 CTCAGTGGCCTTGTAAACC 59 141944869 141944887 TTGTTGAGCATGAACACGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035382.1 ENSRNOG00000059403 ENSRNOT00000092129 1 1 1 103 12 12112037 12112055 CTCTCCCAGACACTGACAG 59 12112122 12113400 GAATAGTTGCTCCTGGCAG 58 Novel Rattus norvegicus 81 AABR07035412.2 ENSRNOG00000054485 ENSRNOT00000080876 1 1 1 112 12 13803484 13803503 CTTCCTCATTCGCCTAAGAG 58 13802834 13802852 TTTCCATATCCCTGCACCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07053480.1 ENSRNOG00000057230 ENSRNOT00000087561 1 1 1 95 3 109388065 109400375 GGTGGAGTCCAGAGTACAC 59 109400432 109400452 GCTCATAACATGATCTGTGCT 59 Novel Rattus norvegicus 81 LOC685564 ENSRNOG00000055239 ENSRNOT00000084235 2 1 1 80 16 13002552 13002570 TGGACAAGAAACCTGAGGA 58 13002610 13005253 GTATGCATACTCAAGTAGGACTC 58 Novel Rattus norvegicus 81 AABR07035622.1 ENSRNOG00000051614 ENSRNOT00000082889 3 1 1 83 12 20543467 20543860 TCGTGGAATCTGGGAACTC 59 20543402 20543420 CCTGGACTCCAGAGAAGAG 59 Novel Rattus norvegicus 81 AABR07066736.1 ENSRNOG00000053883 ENSRNOT00000077449 3 1 1 84 9 13737715 13739316 TCCGATATAAAGCTCACGGA 58 13737650 13737668 AGCAGAATGGAAGTCTGGG 59 Novel Rattus norvegicus 81 AABR07035722.1 ENSRNOG00000056359 ENSRNOT00000081965 1 1 1 80 12 21417547 21417568 GTGAGAAACGTGAGAGTATTGG 59 21417923 21418112 CATACACGATGTTATTATCCTTGGG 60 Novel Rattus norvegicus 81 AABR07053749.1 ENSRNOG00000053070 ENSRNOT00000088540 3 1 1 80 3 124004601 124004621 CTGATGGATATGGAAGTGGAC 58 124004658 124004801 CACTTCCATAATTTCCTCTAGGTC 59 Novel Rattus norvegicus 81 AABR07066861.1 ENSRNOG00000054665 ENSRNOT00000086266 1 1 1 91 9 19448020 19448038 GGAGACAGGTGGAGTTGAG 59 19447638 19447657 CAGCGATGTGACTAGTACTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07066861.1 ENSRNOG00000054665 ENSRNOT00000086266 2 1 1 92 9 19448020 19448038 GGAGACAGGTGGAGTTGAG 59 19447637 19447657 TCAGCGATGTGACTAGTACTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07053847.1 ENSRNOG00000055284 ENSRNOT00000086551 2 1 1 82 3 130435151 130455274 ATGGACAACAGATGGTGCA 60 130455319 130455338 ACTGTCCTTGTAAGCGTCTC 60 Novel Rattus norvegicus 81 AABR07053849.2 ENSRNOG00000057184 ENSRNOT00000084508 1 1 1 69 3 130642115 130642133 CATATTCCAGTGGTCAGCA 57 130640521 130642082 TCATGAGGTTTGTTGTCGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07035835.1 ENSRNOG00000054158 ENSRNOT00000085474 2 1 1 80 12 24447291 24447312 GAAACCACTACAAACCATAGCA 59 24442995 24447252 CAGCTAGAGTCACCTTATCGA 59 Novel Rattus norvegicus 81 AABR07067183.1 ENSRNOG00000057182 ENSRNOT00000090092 3 1 1 90 9 33915121 33915142 AAGATCATTCTGTGAGCATCAG 59 33913720 33915076 CTGTTAGTTGCTCCTCTTAATATCC 59 Novel Rattus norvegicus 81 AABR07067247.1 ENSRNOG00000060115 ENSRNOT00000079936 2 1 1 82 9 36488717 36488735 AAAGGAGAGGAGGACAGAG 58 36492628 36492647 CTGAGACATTTCTCCAGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07036024.2 ENSRNOG00000060352 ENSRNOT00000091954 2 1 1 69 12 30948086 30948106 ATCCATGTCAAGGACATTCTC 58 30947666 30947684 AAGAGAAGCTTTGCTGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07054281.1 ENSRNOG00000059685 ENSRNOT00000087630 2 1 1 80 3 146214859 146214882 CACTCTTGACTTTACATCATGTCC 60 146211443 146214826 CAGAAGAAATAATCTCAGACAGGAG 59 Novel Rattus norvegicus 81 AABR07054292.1 ENSRNOG00000056483 ENSRNOT00000090611 2 1 1 83 3 146545837 146545855 AGACGTGCCTGTCTATTGG 60 146544741 146545791 GGCTGTAACAAGCATTCCTG 60 Novel Rattus norvegicus 81 AABR07005752.1 ENSRNOG00000057137 ENSRNOT00000080259 1 1 1 80 1 195865516 195866275 TCCATATCAGAGGAAAGAGATGG 59 195865458 195865480 GTTGTGAGATAATGTCTCATGCC 60 Novel Rattus norvegicus 81 AABR07067402.2 ENSRNOG00000058672 ENSRNOT00000084225 3 1 1 80 9 43255288 43255817 GTATTCACAAAGGCACTTGC 58 43255858 43255878 GTCTCTTCTGTCACTTGACAC 59 Novel Rattus norvegicus 81 AABR07067402.1 ENSRNOG00000052570 ENSRNOT00000085189 2 1 1 80 9 43290625 43292535 GAATGAAACCTATCTCCACCA 58 43292576 43292595 TCCAAGTAGTCATCTTGCTG 57 Novel Rattus norvegicus 81 AABR07036080.2 ENSRNOG00000054502 ENSRNOT00000087264 2 1 1 81 12 33700257 33700278 TGAAGATGAGAAGACCCAAGAC 60 33700320 33719519 CATGCTTTCCTGCAATCGA 59 Novel Rattus norvegicus 81 AABR07054352.3 ENSRNOG00000053808 ENSRNOT00000086150 2 1 1 64 3 149259514 149259532 TTCGCCTAGGACTACAGTG 59 149258211 149259489 CTTGAGTGTCCTTCTTATTCCA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07067469.1 ENSRNOG00000052973 ENSRNOT00000089604 1 1 1 82 9 47937263 47938284 AGCTCAAGCAATGATCCAG 58 47937199 47937217 CTTGTCGTCTTTGCTTCTG 57 Novel Rattus norvegicus 81 AABR07036318.2 ENSRNOG00000056008 ENSRNOT00000086718 3 1 1 98 12 38117928 38117946 TATGAGCAAGAACGAGCGA 59 38118006 38120634 TCAGTATTGTGCAACTGTGAC 59 Novel Rattus norvegicus 81 AABR07054482.1 ENSRNOG00000061183 ENSRNOT00000091823 1 1 1 110 3 155857430 155858957 CTTACCTGCTCAGATCAAGAG 58 155857340 155857358 TATCTTCCCAGTGAGTCCC 58 Novel Rattus norvegicus 81 AABR07026120.1 ENSRNOG00000055659 ENSRNOT00000081035 1 1 1 60 16 64923466 64924520 TTCACTGACTGTCAGCAGG 60 64923424 64923447 CAACAGGATTAGTAAATACCCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07005950.2 ENSRNOG00000061500 ENSRNOT00000086515 2 1 1 82 1 208521667 208521685 TGCCTAGAGCTTCATTCAC 57 208521729 208522446 CTCACAGCTGAATGAATTGTG 58 Novel Rattus norvegicus 81 AABR07067767.1 ENSRNOG00000056520 ENSRNOT00000080327 3 1 1 88 9 62574195 62574213 TACAGGTGACTTGTCCTGG 59 62574265 62586001 CTCTGTCAAGCATCTGGTG 58 Novel Rattus norvegicus 81 AABR07026151.1 ENSRNOG00000061567 ENSRNOT00000082609 1 1 1 80 16 65931011 65932059 AACACATAACAGAAGCCTCG 58 65932100 65932120 AGATTTCCTTCTCCTCTTGGT 59 Novel Rattus norvegicus 81 AABR07005977.3 ENSRNOG00000059695 ENSRNOT00000083710 3 1 1 88 1 210397985 210398006 CCCAGATTTCCAAATCTATTGG 57 210398594 210398614 AACTGTACTTTCGGAGTAGCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07054583.1 ENSRNOG00000057311 ENSRNOT00000085951 3 1 1 98 3 162251486 162254144 TTCACTCACTTCAGAGGGA 58 162254204 162254224 TTTATTTGGTCCCACGATGAG 58 Novel Rattus norvegicus 81 AABR07005985.2 ENSRNOG00000059125 ENSRNOT00000089947 1 1 1 109 1 212146437 212146455 AGCTCACTGAAATTGTCCC 58 212146528 212148514 ATTCTGTCAGACGTGTCTG 57 Novel Rattus norvegicus 81 LOC102552829 ENSRNOG00000052879 ENSRNOT00000084277 2 1 1 89 16 71402888 71402906 GTTAGATGCCAGCCATCTG 58 71402957 71406136 AGAATTCTTTCCTCTGCTCTC 58 Novel Rattus norvegicus 81 AC132720.2 ENSRNOG00000052089 ENSRNOT00000090045 3 1 1 70 1 215586157 215586175 ATGGTCTGTTCCAGCTGAC 60 215582316 215582334 TTCAGACCCATAGCAGTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC141169.1 ENSRNOG00000054948 ENSRNOT00000084821 1 1 1 135 9 69991264 69991282 AGACAAGACGTAGCAGCTC 60 69987089 69987107 TCACTCAAGCTGCACTCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AC111319.1 ENSRNOG00000058458 ENSRNOT00000082753 3 1 1 113 9 71386848 71387370 GAAATGATACACCAGGCCC 58 71387447 71387465 CCAGCATGGATAACGTGAG 58 Novel Rattus norvegicus 81 AABR07054753.1 ENSRNOG00000060628 ENSRNOT00000088118 2 1 1 80 3 168643682 168646277 ATAGATAAGTGCTCCTCTGGC 59 168646319 168646337 TCTCATGAATGCAGGGAGG 59 Novel Rattus norvegicus 81 AABR07026441.1 ENSRNOG00000055536 ENSRNOT00000085982 3 1 1 96 16 76750241 76750261 AGATTGTCAATGCAGGATGAC 59 76719470 76750186 CCAATTCCACCTTAGTAATTGC 58 Novel Rattus norvegicus 81 AABR07026447.1 ENSRNOG00000057882 ENSRNOT00000084958 2 1 1 80 16 77130341 77136772 AAAGGCATTCAAGGAAAGGAG 59 77130281 77130301 CATAAGTGAGGATGATTGGCC 59 Novel Rattus norvegicus 81 AABR07037477.1 ENSRNOG00000058312 ENSRNOT00000086941 2 1 1 61 X 21946882 21946900 TGTCATCTGCCAAATGGGT 60 21946380 21946860 CTGAGAAATCCTGATGAAACCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07072963.1 ENSRNOG00000061570 ENSRNOT00000080924 1 1 2 60 3 174035648 174035666 ACATCTCTTGAGCTGCTGG 60 174040627 174040645 AATTCTTCTGAGGCCTCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006311.1 ENSRNOG00000060420 ENSRNOT00000079478 2 1 1 80 1 228815491 228815510 CTTGTAGAAGAGCTGACCTG 58 228793683 228815449 AACACAGTCTTCCTTACCTG 57 Novel Rattus norvegicus 81 AABR07068182.1 ENSRNOG00000056564 ENSRNOT00000078715 1 1 1 80 9 87907729 87907749 TTTCAATAGGAAAGGTGGTCG 58 87899571 87907687 CAGATTATCCGGGTGACTG 57 Novel Rattus norvegicus 81 AABR07068182.1 ENSRNOG00000056564 ENSRNOT00000078715 3 1 1 80 9 87907728 87907748 TTCAATAGGAAAGGTGGTCGA 59 87899570 87907687 TCAGATTATCCGGGTGACTG 59 Novel Rattus norvegicus 81 AABR07055333.1 ENSRNOG00000060440 ENSRNOT00000077500 3 1 1 97 7 1587159 1587177 AGAATCCCGATTCTACGCA 59 1587237 1591325 TGTTCATTAATGGACCTGCC 58 Novel Rattus norvegicus 81 AABR07026579.1 ENSRNOG00000054303 ENSRNOT00000090737 1 1 1 122 16 84545738 84545757 CTTCAAGTTCTGAGGACCCA 59 84545842 84545966 ATGTAGTCCATGGAAGCCC 59 Novel Rattus norvegicus 81 AABR07026579.1 ENSRNOG00000054303 ENSRNOT00000090737 2 1 1 123 16 84545737 84545756 TCTTCAAGTTCTGAGGACCC 59 84545842 84545966 ATGTAGTCCATGGAAGCCC 59 Novel Rattus norvegicus 81 AABR07026623.1 ENSRNOG00000052556 ENSRNOT00000085748 1 1 1 60 16 86818859 86818877 CTGAGTCCGTTACTCTGCA 59 86818899 86829775 GGCATAGTTTCAACACTCCTG 59 Novel DesignRelaxed Rattus norvegicus 81 AABR07056103.1 ENSRNOG00000054038 ENSRNOT00000083267 3 1 1 82 7 20217443 20217461 TGAAAGAAGTGGGAGTGCT 59 20207988 20217397 TAACTTCATCCAGCCTGGA 58 Novel Rattus norvegicus 81 AABR07068447.1 ENSRNOG00000055878 ENSRNOT00000085503 1 1 1 91 9 105808063 105808081 ATCATGTCCACAAGATGGC 58 105808136 105826406 TTTCACCCTCGTTTGTCTG 58 Novel Rattus norvegicus 81 AABR07006724.1 ENSRNOG00000053728 ENSRNOT00000091108 3 1 1 184 1 250199233 250199251 AAGTACCGCTCGGTAATCC 59 250105949 250199086 ATGAGATCCTTCGACTGTGG 59 Novel Rattus norvegicus 81 AABR07006752.1 ENSRNOG00000056210 ENSRNOT00000090926 2 1 1 70 1 251400936 251400954 ATGTAGTCACTGCTGAAGC 58 251387973 251400904 ATCTTATGAAGGAGAGGCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07068590.1 ENSRNOG00000057630 ENSRNOT00000077292 3 1 1 86 9 110399611 110401434 TGACATTGGAGTATTTCTAGGG 57 110399546 110399565 GGAATTGAACTCTGGACCTC 58 Novel Rattus norvegicus 81 AABR07056415.2 ENSRNOG00000058322 ENSRNOT00000087908 1 1 1 81 7 24400119 24403938 CCATTTCTAAGAGACAACATCG 57 24403979 24403998 TGAACCTTACTTCTGCTCAG 57 Novel Rattus norvegicus 81 AABR07068612.2 ENSRNOG00000052177 ENSRNOT00000081086 1 1 1 80 9 112125003 112125021 ATGAGTGGAAGAGTCCCTG 58 112121787 112124960 AAACCAGGTGTGATAAGCTC 58 Novel Rattus norvegicus 81 AABR07056464.1 ENSRNOG00000060280 ENSRNOT00000078205,ENSRNOT00000088976 1 2 2 80 7 26146117 26146450 GGAGACTATATTAGGCGTTATTTGC 60 26146061 26146079 TTCTGGTGCATTCCAAGGA 59 Novel Rattus norvegicus 81 AABR07056465.1 ENSRNOG00000058036 ENSRNOT00000087421 2 1 1 81 7 26181697 26186143 TTACCTCTAGAAGTTCAAAGTCCC 60 26186181 26186201 ACAACAGCCTTTCTTTCTTCC 59 Novel Rattus norvegicus 81 AABR07068712.2 ENSRNOG00000058356 ENSRNOT00000083914 2 1 1 80 9 116290997 116291608 GTAGCAAGAGAACTCTTACTGAC 59 116290939 116290957 CCCAGAAGTCCTAAGAGCA 58 Novel Rattus norvegicus 81 AABR07042668.1 ENSRNOG00000051791 ENSRNOT00000091435 3 1 1 87 19 2391275 2392048 AATGAGGGAAGAATCCAGC 57 2392098 2392117 CCACTACAGCAAAGGATACC 58 Novel Rattus norvegicus 81 AABR07006854.2 ENSRNOG00000056594 ENSRNOT00000088352 3 1 1 89 1 259107349 259111310 GATCGGTCTTCCCAAGGAG 60 259111361 259111381 CATCTTCTCCTTACTGTCACG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07042731.1 ENSRNOG00000059356 ENSRNOT00000077150 1 1 1 60 19 5851829 5851847 AGGAGGAGTCTCCTGTGAG 60 5851867 5852506 GTAATTTGTCTGTACCAGGTACC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069008.2 ENSRNOG00000060517 ENSRNOT00000088160 1 1 1 80 8 5154330 5154843 CCTCGAGAAATTTGATCTCAGG 59 5154271 5154289 TCAGATGGAAGGCCTTCAC 59 Novel Rattus norvegicus 81 AABR07042802.1 ENSRNOG00000052398 ENSRNOT00000086667 2 1 1 62 19 9567052 9567070 AAATCAGCCAACGAATCGG 59 9566617 9566637 AGTTGTAAGAACATGGCAGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07056680.1 ENSRNOG00000054516 ENSRNOT00000078509 3 1 1 131 7 35634685 35739097 GAAGTCAGAGGACTCTGCC 60 35634572 35634591 CCCACCCTTTGAATTCTCTG 59 Novel Rattus norvegicus 81 AC128836.1 ENSRNOG00000055411 ENSRNOT00000082461 1 1 2 170 1 264488777 264488795 CTGTCCCTCCAATCTGTCC 60 264489687 264489705 ATAAGGCGCAATCAGTGTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07056705.1 ENSRNOG00000060894 ENSRNOT00000084659 2 1 1 81 7 37404490 37406714 GATCTCGCTTTGTGGTTCC 59 37406753 37406777 CAATACCAAGATCTTCAGATGATCC 60 Novel Rattus norvegicus 81 AC105485.2 ENSRNOG00000056655 ENSRNOT00000083963 1 1 1 106 1 264975533 264976516 GATTGAAGGAGGAGTCCGG 60 264975445 264975463 TAAAGGTGTCAGGTGGCTC 59 Novel Rattus norvegicus 81 AABR07072065.2 ENSRNOG00000057355 ENSRNOT00000084208 2 1 1 80 1 269080684 269080702 AACCAGTTTACCGCATTGC 60 269080745 269081448 ATCGAAGCCCAATGATTGTG 59 Novel Rattus norvegicus 81 AABR07027347.1 ENSRNOG00000051991 ENSRNOT00000078832 2 1 1 60 17 25568587 25568605 ACCAGATTACACGGGAAGC 60 25569069 25569087 AACGAGCATGGCTGTAGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07043031.3 ENSRNOG00000059345 ENSRNOT00000081723 3 1 1 80 19 18021952 18021970 CTTCTGTCCTCTTCTGGCT 59 18018423 18021911 CATCAGCTAGTTGATTCAGCAG 60 Novel Rattus norvegicus 81 AABR07043100.1 ENSRNOG00000057051 ENSRNOT00000090089 1 1 1 84 19 20784099 20784117 AACGAAGCTGGTGAAAGGA 60 20774729 20784054 CATCTGGGAAATTTGCTTTCTC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07027394.1 ENSRNOG00000052212 ENSRNOT00000078151 1 1 1 88 17 27991847 27995392 TTAGACAGCACGAGGACTG 59 27991777 27991795 GAGGAAGCTCCTTTCCGAG 60 Novel Rattus norvegicus 81 AABR07057231.1 ENSRNOG00000056491 ENSRNOT00000091512 1 1 1 110 7 61874693 61874711 AATTTCTTCCGCGTTCAGC 60 61851310 61851328 AACTGTCTTCCTAGGCTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07057325.1 ENSRNOG00000059391 ENSRNOT00000086676 1 1 1 80 7 65729584 65731367 GACGGTCATTTACAGAAGCT 58 65729523 65729543 CTGAAAGACAAGCAGGATCTC 59 Novel Rattus norvegicus 81 AABR07043358.1 ENSRNOG00000055131 ENSRNOT00000089095 1 1 1 80 19 27747142 27748333 GAACAACAGGCCCTATTTCAG 59 27747082 27747101 TGCAGAATTGACATGACCAC 59 Novel Rattus norvegicus 81 AABR07043358.1 ENSRNOG00000055131 ENSRNOT00000089095 2 1 1 80 19 27747142 27748332 AACAACAGGCCCTATTTCAG 58 27747081 27747100 GTGCAGAATTGACATGACCA 59 Novel Rattus norvegicus 81 AABR07043365.1 ENSRNOG00000058666 ENSRNOT00000083526 1 1 1 79 19 27833484 27833502 TGATGGACACAGGACATGG 59 27834579 27834597 CCTGCACCTTGTTTAGGAC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069728.1 ENSRNOG00000058251 ENSRNOT00000090767 1 1 1 80 8 38128786 38128806 GGAATCATTTCAGCTCTCCTC 59 38128848 38128996 GCTGAATGTAGTGGACCCT 59 Novel Rattus norvegicus 81 AABR07057421.3 ENSRNOG00000059728 ENSRNOT00000079739 2 1 1 80 7 70264842 70264860 TGTTCCTGGAGAGGAAGGA 60 70257724 70264804 CTTGATATGTCATGGATATCGAGAG 59 Novel Rattus norvegicus 81 AABR07069840.1 ENSRNOG00000058968 ENSRNOT00000090495 1 1 1 80 8 41156309 41156330 CATGGAGATCACAATTCCTGAG 59 41155965 41156268 AGGGTGGAAGCATATCCTC 59 Novel Rattus norvegicus 81 AABR07043667.1 ENSRNOG00000054455 ENSRNOT00000087527 2 1 1 103 19 35185307 35190976 CATCAAAGGTACCCTAAGAAGC 59 35191037 35191058 AGAATACTGATTGAGCCATGGT 60 Novel Rattus norvegicus 81 AABR07028908.2 ENSRNOG00000055317 ENSRNOT00000078959,ENSRNOT00000081689 1 2 2 80 10 107629 109350 TCGACAAGACAATCTGCCA 59 109394 109412 TCAAATCCTGCACCAAGGA 59 Novel Rattus norvegicus 81 AABR07043701.2 ENSRNOG00000058049 ENSRNOT00000088764 3 1 1 77 19 36173581 36173599 TGGAGCTAACTACCAAGGA 57 36173640 36174951 GGCTCTTGTTCATGGATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07028917.1 ENSRNOG00000053864 ENSRNOT00000085385,ENSRNOT00000088497 2 2 2 80 10 196627 197043 AGTGGATTCAGGAACGAGG 59 196565 196585 TCCAGAAGATGTCAGTCATCC 59 Novel Rattus norvegicus 81 AC129395.2 ENSRNOG00000057329 ENSRNOT00000085015 3 1 1 120 10 6889340 6889358 CTTCTGCTTTCACCCACTG 59 6889442 6889969 ACAGGAGCACTGAAATCCA 59 Novel Rattus norvegicus 81 AABR07029111.2 ENSRNOG00000056145 ENSRNOT00000077595 2 1 1 84 10 7871857 7871875 TGACATCGTGAAGGTTGTC 58 7871921 7880166 TGAAGTCAAGAGTGTCTTCTC 57 Novel Rattus norvegicus 81 AABR07057683.1 ENSRNOG00000060927 ENSRNOT00000090394 1 1 1 60 7 83991191 83991212 TTGACCTGAAAGTTCTGAATGC 60 83989709 83991170 TCCATGTCTGGAAACACCT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07029175.1 ENSRNOG00000054141 ENSRNOT00000089720 2 1 1 76 10 11358544 11358563 GCTGATAAGAAACTGGTGGT 58 11362046 11362064 TCTTCCAGCAGTGTACGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07007566.1 ENSRNOG00000054888 ENSRNOT00000086723 1 1 1 80 2 19431937 19477038 CAAGGTAAGACAACCAGAAGAG 59 19477077 19477097 CAACTTGAAGTTTGTGACCTG 58 Novel Rattus norvegicus 81 AABR07057844.2 ENSRNOG00000061127 ENSRNOT00000091021 3 1 1 80 7 90423034 90423053 TACGTACAGTATGACCCTGG 58 90422433 90422991 CCATAGCCTCTCATAGCGA 59 Novel Rattus norvegicus 81 AABR07058124.4 ENSRNOG00000056785 ENSRNOT00000080596 3 1 1 80 7 101284592 101308851 GATCACAGATGCGTTGTCAG 59 101284531 101284550 GTCAAGATCACATCTGCTCC 59 Novel Rattus norvegicus 81 AABR07029535.1 ENSRNOG00000054345 ENSRNOT00000084631 2 1 1 85 10 33227265 33227283 GTGTCCTTGGTACTGAAGC 58 33227329 33227906 ATTTCCACACTCTTCATCACTG 59 Novel Rattus norvegicus 81 AC119356.1 ENSRNOG00000058744 ENSRNOT00000086947 3 1 1 80 2 28346847 28348253 AGTTGATCTCAGGTTTCAGG 57 28348295 28348314 GTCACAGAGATGCATACTGG 58 Novel Rattus norvegicus 81 AABR07058412.2 ENSRNOG00000059713 ENSRNOT00000086159 3 1 1 62 7 115114858 115114876 TCAGAGTGGGAAACAGCTG 60 115114386 115114405 GAGATATCTTGGAGGGCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AC112328.1 ENSRNOG00000053602 ENSRNOT00000090955 2 1 1 81 8 59108008 59108027 CTGACTCTCCAAGAACACCT 59 59108071 59110122 GAGGGACTGTTGCTAGCTC 60 Novel Rattus norvegicus 81 AABR07070265.1 ENSRNOG00000056498 ENSRNOT00000084245 3 1 1 82 8 62124507 62124526 CTTTGAGCCAGGAAGAACAG 59 62125963 62125981 TAGCTCCACAGTGAAGGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AC095267.1 ENSRNOG00000051809 ENSRNOT00000077229 1 1 1 89 X 156225837 156225856 CTTCATGAGAGTGTGCACAC 59 156221241 156225786 CGACCTGACCTTTCTCAGAG 60 Novel Rattus norvegicus 81 AABR07070341.2 ENSRNOG00000053265 ENSRNOT00000088695 3 1 1 151 8 66357978 66358107 TTGTCCCAGGATGACAGTG 59 66357845 66357863 CATCATTGGTGCCATGGAG 59 Novel Rattus norvegicus 81 AABR07058639.1 ENSRNOG00000053745 ENSRNOT00000091728 3 1 1 82 7 129340958 129340978 ACAGTATACAGACTCTCAGCC 59 129339961 129340914 TTCAACAAGCCAAGCTGTG 59 Novel Rattus norvegicus 81 AABR07070352.1 ENSRNOG00000057304 ENSRNOT00000090789 1 1 1 88 8 66731703 66731721 AGTACTGAAGGCCACTCAG 59 66730716 66731652 TGTTTCTCTTGTCGAGTCAC 58 Novel Rattus norvegicus 81 AABR07070352.1 ENSRNOG00000057304 ENSRNOT00000090789 3 1 1 89 8 66731703 66731721 AGTACTGAAGGCCACTCAG 59 66730715 66731652 TTGTTTCTCTTGTCGAGTCAC 59 Novel Rattus norvegicus 81 AABR07028036.1 ENSRNOG00000056249 ENSRNOT00000078898 3 1 1 97 17 54180929 54180949 GAAATATGGAACTGCTGGGTG 59 54178574 54180876 CTAGAAGTATCTGTCAAGTGATGTC 59 Novel Rattus norvegicus 81 AABR07044418.3 ENSRNOG00000061105 ENSRNOT00000088736 2 1 1 62 20 5317953 5318590 CTTGGGACCTCAAGGAGAG 59 5317909 5317927 CTCACCTGAGTTCCAGGAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028094.1 ENSRNOG00000052792 ENSRNOT00000080838 3 1 1 76 17 56876259 56876277 CTCTCCAACCATGTCCTGG 60 56876317 56879351 ATCAAAGGTGAGAAGCCGT 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07059009.1 ENSRNOG00000054713 ENSRNOT00000090542 1 1 1 60 4 1116205 1116226 CCCGTTAGATGAATACTGTTCC 59 1084232 1084253 AAATTCAAGCATCCAGATGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07028143.1 ENSRNOG00000057590 ENSRNOT00000083646 3 1 1 80 17 57832236 57837031 GAACTACTAACCTGAAGATAAGCG 59 57837068 57837088 GGATTTCCTTCTCCAAGTCCA 60 Novel Rattus norvegicus 81 AABR07028266.1 ENSRNOG00000053057 ENSRNOT00000090723,ENSRNOT00000078360 1 2 2 73 17 62814782 62814801 CTCAGATGACTTTGGATGGT 57 62807955 62807973 CTCTTCTCGACTTGAAGCA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07059499.1 ENSRNOG00000058022 ENSRNOT00000081034 2 1 1 80 4 22048281 22048301 TAAGGTTCCACAAAGACAGCT 60 22048341 22068929 TCAGATCTTCCTCTGCATTCC 60 Novel Rattus norvegicus 81 AABR07008099.2 ENSRNOG00000058955 ENSRNOT00000077179 2 1 1 116 2 42878782 42878801 TCTTATTTGTCTTCCAGCCC 58 42877540 42878705 AGATAACAAGATGAGCACAGG 58 Novel Rattus norvegicus 81 AABR07008126.1 ENSRNOG00000054288 ENSRNOT00000080687 2 1 1 61 2 44645853 44647342 CGTCATCTGACATATTTCTTGG 57 44645813 44645831 CAAGGTCTTCCGATTAGCA 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07044841.1 ENSRNOG00000061380 ENSRNOT00000078177 2 1 1 111 20 23359617 23359635 CTGTGTCCAGACTCCACAG 60 23351322 23359542 TTTCCTGGACAGGTGTTGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07071199.2 ENSRNOG00000060001 ENSRNOT00000078201 2 1 1 80 8 104389034 104390962 TCAGGAAGTTTATGCTTGTGAG 59 104388975 104388993 TCGTCATAAGCAGAGGCTC 59 Novel Rattus norvegicus 81 AC110102.1 ENSRNOG00000056346 ENSRNOT00000080355 3 1 1 61 4 44646973 44646992 GATGCTCATGGCTCAATGTG 60 44639618 44646953 CATATACCTGTCTTTCACACTGC 60 Novel DesignNoJunction Rattus norvegicus 81 AC116288.1 ENSRNOG00000060822 ENSRNOT00000084692 3 1 1 84 4 48932468 48932490 CTGAATGTGAAGTCTGGATTCAC 60 48928943 48932430 GGTGATTTAATCTGTATCACCTCTC 59 Novel Rattus norvegicus 81 AABR07008287.2 ENSRNOG00000061261 ENSRNOT00000083266 1 1 1 80 2 51571968 51582153 GGACTTGGTTACAGAAGTCC 58 51571907 51571927 ACTCTGACAGGAAGTATGAGG 59 Novel Rattus norvegicus 81 AABR07060084.1 ENSRNOG00000058930 ENSRNOT00000091929 2 1 1 81 4 53255636 53255660 GTCTGAAGATAGACTATTACACCAG 59 53255698 53271221 CATCTCCTGAGCTGAATCCT 59 Novel Rattus norvegicus 81 AABR07071385.1 ENSRNOG00000056504 ENSRNOT00000077851 3 1 1 64 8 112996286 112996306 TTCAGTATCATCCCTGCTCTC 59 112993116 112993134 CTGTATGGAACCAAGGGCA 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07060235.1 ENSRNOG00000052478 ENSRNOT00000089153 3 1 1 70 4 63631540 63698671 GAACAATAGAAGGCGAAGATAGC 60 63631492 63631510 GTAGAAGGGAGGTAGGTCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07071402.1 ENSRNOG00000056542 ENSRNOT00000084690 1 1 1 98 8 114131948 114131966 ATGAAGTGGCTGATCGACC 60 114132028 114132761 CAGAGTAGGCCACAACCTC 60 Novel Rattus norvegicus 81 AABR07060318.1 ENSRNOG00000058306 ENSRNOT00000086478 3 1 1 71 4 67100563 67100581 CAACTGGTTTGGGAAAGCT 59 67103094 67103112 ATATTGCCCACTGAAGCAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07060341.1 ENSRNOG00000059731 ENSRNOT00000081665,ENSRNOT00000080614 1 2 2 80 4 68424643 68424664 TGAGATTAAAGAACTCCACAGC 59 68424703 68425215 TCATTCATGTCAATCCACAGG 58 Novel Rattus norvegicus 81 AABR07008485.1 ENSRNOG00000061419 ENSRNOT00000087846 1 1 1 61 2 61038800 61038819 ACAGGATGAAACGTACTCAC 58 61038588 61038609 CAAGATAGCAGATTAGCTTGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AC120721.1 ENSRNOG00000054040 ENSRNOT00000077346 1 1 1 77 4 78667559 78667577 TGCAATTCATCTTGCTCCC 59 78684474 78684493 GGGTTCAGTCTTCTGTACTG 58 Novel DesignNoJunction Rattus norvegicus 81 AC120721.1 ENSRNOG00000054040 ENSRNOT00000077346 3 1 1 78 4 78667559 78667577 TGCAATTCATCTTGCTCCC 59 78684474 78684494 TGGGTTCAGTCTTCTGTACTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07008594.1 ENSRNOG00000058273 ENSRNOT00000080790 1 1 1 82 2 65870808 65870827 AACACTCAGTGAAATCAGCT 58 65851558 65851581 CCTGATAAGTTATCTGCTTCATGG 60 Novel DesignNoJunction Rattus norvegicus 81 AC241722.1 ENSRNOG00000053975 ENSRNOT00000085523 2 1 1 100 Y 1949497 1949516 TATTTCTTGGCAGCATTGTG 57 2027158 2027178 GGTATTCTCCAGCAATGTCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07060560.2 ENSRNOG00000053029 ENSRNOT00000091322 3 1 1 84 4 80484385 80486382 AACTAATCGGGAGGAGCTG 59 80486429 80486448 TCTTTCCCATCACAGAGGAG 59 Novel Rattus norvegicus 81 AABR07008661.1 ENSRNOG00000051543 ENSRNOT00000088420 1 1 1 60 2 69035913 69035931 ACTTCCCATCTCAGCTCAC 59 69038682 69038700 GAAACTGAGGATCCATGCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07008661.1 ENSRNOG00000051543 ENSRNOT00000088420 3 1 1 60 2 69035912 69035931 TACTTCCCATCTCAGCTCAC 59 69038681 69038699 AAACTGAGGATCCATGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07060589.1 ENSRNOG00000061189 ENSRNOT00000089053 1 1 1 138 4 82481809 82481827 ATACATCGCTGTTGTGCCT 60 82484999 82485658 TTTCCTGCACACCTTTCCT 60 Novel Rattus norvegicus 81 AABR07058672.1 ENSRNOG00000052733 ENSRNOT00000083253 3 1 1 82 7 131193127 131193148 GAAACCATTATTGGAGTTCAGC 58 131193189 131200730 TAGCTCCCTTCAAATTCTGTC 58 Novel Rattus norvegicus 81 AABR07058722.1 ENSRNOG00000058598 ENSRNOT00000090880 3 1 2 70 7 134985984 134988458 AAATGATCTCTTCCCGTTGTG 59 134988490 134988508 GAACTGGATTGGCTTGGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07044081.1 ENSRNOG00000061594 ENSRNOT00000088543 3 1 1 80 19 56541203 56541458 ATATGGATCAGCATGGAGGA 58 56541501 56541519 AGACGCTCTCAATTCTGTG 58 Novel Rattus norvegicus 81 AABR07058805.1 ENSRNOG00000055438 ENSRNOT00000089767 2 1 1 80 7 138228631 138228649 TGCTGTTGCTATCTGAGGA 58 138228692 138228873 GTTGAGTCCCAGAATTCCTG 58 Novel Rattus norvegicus 81 AABR07009351.1 ENSRNOG00000058574 ENSRNOT00000079444 3 1 1 96 2 93847275 93847295 ACATTTGATGTGAAGAACCGG 59 93845651 93847217 CACAGCTTGCTGAGTTGTG 60 Novel Rattus norvegicus 81 AABR07058976.1 ENSRNOG00000054065 ENSRNOT00000077914 1 1 1 107 7 145727982 145728001 GGTTTAGGGTTAGGGTTAGG 57 145728310 145728328 CTACCCTAACCCTAACCCT 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07010587.1 ENSRNOG00000054842 ENSRNOT00000078574 1 1 1 80 2 141637402 141637420 ACTGACATCACACTAGTGC 57 141637464 141639970 CTTCTTGGCTGTCTTCTCC 58 Novel Rattus norvegicus 81 AABR07010935.1 ENSRNOG00000053917 ENSRNOT00000086647 1 1 1 62 2 155301997 155303700 TGTAGCTTCAGTCTTAAAGGAC 58 155303723 155303741 AAACTGGAAGTCAGGAGGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07010985.1 ENSRNOG00000057008 ENSRNOT00000078751,ENSRNOT00000082918 3 2 2 143 2 156311186 156316031 AGTACTCCAAGGGCATGAG 59 156311061 156311082 CCATGTATATCAGCGTTTAGGT 58 Novel Rattus norvegicus 81 AABR07011888.1 ENSRNOG00000053028 ENSRNOT00000085019 1 1 1 80 2 174306751 174306771 CTAGGACAGATTCGACTCCAG 60 174254895 174306710 AGTTCCACTGAAATGTCCGT 60 Novel Rattus norvegicus 81 AABR07011947.1 ENSRNOG00000061687 ENSRNOT00000090996 1 1 1 82 2 177482374 177489455 CAGAGACTTGGGTGGACTC 59 177482310 177482330 CTCCTCATATGTAGTCAGCCT 59 Novel Rattus norvegicus 81 AABR07012051.2 ENSRNOG00000057323 ENSRNOT00000087787 3 1 1 84 2 183913601 183914891 ATTTCAGCATACCAAAGCCTC 59 183913537 183913555 CCTCCAGGTGACTGATGTC 60 Novel Rattus norvegicus 81 AABR07012081.2 ENSRNOG00000058727 ENSRNOT00000080610 3 1 1 91 2 184916590 184916843 TTGTGTCATGTGGACCTCC 60 184916517 184916536 ATATCGAAGCACAGTGTCCA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07014499.1 ENSRNOG00000060060 ENSRNOT00000088642 1 1 1 80 14 18155483 18157135 TATGTGACCTTCAGAGATGGG 59 18155423 18155446 GTGTTTAGATGTAGACTAGAGCTG 59 Novel Rattus norvegicus 81 AABR07014499.1 ENSRNOG00000060060 ENSRNOT00000088642 2 1 1 81 14 18155484 18157137 AGTATGTGACCTTCAGAGATGG 59 18155424 18155448 TGTTTAGATGTAGACTAGAGCTGAG 60 Novel Rattus norvegicus 81 AABR07012884.1 ENSRNOG00000052614 ENSRNOT00000081168 3 1 1 81 2 213687107 213687637 ACATGACAGCCACAGATCC 60 213687679 213687700 GTCTTTCTTGATGACGTTTGCT 60 Novel Rattus norvegicus 81 AABR07013140.1 ENSRNOG00000056951 ENSRNOT00000091134 3 1 1 105 2 224408727 224418838 TGAATGAAGATGGAGAAGAAGC 59 224418901 224418922 TTAAATAAGGGTGGTCCTTCAG 58 Novel Rattus norvegicus 81 AABR07013157.2 ENSRNOG00000052653 ENSRNOT00000088658 3 1 1 77 2 225143154 225143172 TCTCTTTCTGAAGGGCGTG 60 225143212 225143954 TTTAGGTGAGGAAAGGGCTC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07013249.1 ENSRNOG00000061460 ENSRNOT00000080106 1 1 1 80 2 230384534 230384557 GTACCATTGTCAACTGATGATAGG 59 230377971 230384496 TTGAGTCATGGTCCATCTGG 60 Novel Rattus norvegicus 81 AABR07013304.1 ENSRNOG00000055380 ENSRNOT00000077485 1 1 1 224 2 232650761 232650780 GGAACAAAGTTCCCACAGAG 59 232637260 232648327 CTCCTTTCTTGCAGTCCTG 58 Novel DesignRelaxed Rattus norvegicus 81 AABR07013686.1 ENSRNOG00000055290 ENSRNOT00000087168 1 1 1 80 2 250349589 250352324 TAATATCCAGTCCTGTACGCC 59 250349529 250349548 CGGCTTGCTCCTTAATACAG 59 Novel Rattus norvegicus 81 AABR07013841.1 ENSRNOG00000059248 ENSRNOT00000078408 2 1 1 80 2 258783426 258783725 TAATGCTGACAAGGTCATCC 58 258783768 258783786 ATGAAGTCAGAGCAGACGA 59 Novel Rattus norvegicus 81 AC114070.1 ENSRNOG00000055627 ENSRNOT00000077992 1 1 1 78 15 35953353 35953373 GGGTTGATTTCTGCAAATCTG 58 35955758 35955778 TTAGAGCATGAGAGCTTAAGG 57 Novel DesignNoJunction Rattus norvegicus 81 Cfap61 ENSRNOG00000011028 ENSRNOT00000076332,ENSRNOT00000014713 3 2 4 81 3 140159558 140160340 AAGGAGATCATCCGGACTG 59 140160382 140160403 CTAGACTCAGATATGTTGGCAC 59 Novel Rattus norvegicus 81 AABR07018164.1 ENSRNOG00000032317 ENSRNOT00000044151 3 1 1 86 15 44329494 44329512 CTCAACAAAGGCCACAAGG 59 44329579 44329597 GAACTTGGTGTGCTTGGTG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07005031.1 ENSRNOG00000036293 ENSRNOT00000054415 2 1 1 62 1 176078604 176078623 CATCTCTGGGCGAGTATCTC 60 176078561 176078579 AAGGCACAGAGGCTTAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U5 ENSRNOG00000060577 ENSRNOT00000084254 2 1 1 61 8 70702118 70702139 CAGATCGTATAAATCTTTCGCC 58 70702078 70702097 GACTCAGAGTTGTTCCTCTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07043169.1 ENSRNOG00000024754 ENSRNOT00000031820 3 1 1 65 19 25180867 25180885 CGATAAGCAAAGGTCAGCG 59 25180816 25180834 TCTTGGAGAAACTGAGGCC 59 Novel DesignNoJunction Rattus norvegicus 81 AC121413.1 ENSRNOG00000056044 ENSRNOT00000080738 1 1 1 71 17 9689757 9689775 CAAGTGAGACAGATGGGCA 60 9689809 9689828 GCACAAGGGAAGAGTTAGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07072995.1 ENSRNOG00000056668 ENSRNOT00000086134 3 1 1 60 4 56675680 56675699 CCTTTCTTCCTCTCACAACC 58 56675639 56675660 GACCCACAGTAACTACTTTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07039139.1 ENSRNOG00000050331 ENSRNOT00000074830 2 1 1 71 X 69152300 69152319 CTGGTGCTAAATTGGGAGAG 58 69152244 69152262 GATATTGTCCACTGGGCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07039648.1 ENSRNOG00000002789 ENSRNOT00000003730 1 1 1 60 X 81816990 81817008 CCCATTAAGGAGTCTCCGA 58 81816948 81816969 GAACCACATCCTTTAGAGATGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000054060 ENSRNOT00000083440 1 1 1 60 1 249097756 249097777 GTATTAGGTAGCTGTACTCCCA 59 249097796 249097816 CCACATTTGGAACTTGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07031949.1 ENSRNOG00000061023 ENSRNOT00000086625 1 1 1 65 18 40124192 40124210 CCCAGTGTTACTGGGACAG 60 40124241 40124259 GACTTGAATCCTTGGCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_2_1411.1 ENSRNOG00000051361 ENSRNOT00000076638,ENSRNOT00000076033 3 2 3 74 2 121357830 121357848 AAGACACAGATGCCCAGAC 60 121386150 121386168 TGCTTCTGTCCAGACTCTC 59 Novel DesignNoJunction Rattus norvegicus 81 Rn60_7_1165.1 ENSRNOG00000037374 ENSRNOT00000076594,ENSRNOT00000056556 1 2 2 80 7 116558121 116559929 CAGAAGTTGTTGTGAGCTCTG 60 116558061 116558080 CAGTTTGAGAACTCGTTGGG 59 Novel Rattus norvegicus 81 Rn60_7_1165.1 ENSRNOG00000037374 ENSRNOT00000076594,ENSRNOT00000056556 2 2 2 80 7 116558115 116559924 GTTGTTGTGAGCTCTGTAAGAG 59 116558056 116558075 CTCAGCAGTTTGAGAACTCG 59 Novel Rattus norvegicus 81 Rn60_7_1407.5 ENSRNOG00000060019 ENSRNOT00000087079,ENSRNOT00000077084 1 2 2 85 7 142860724 142861286 TGGATGTTAGCACATGACCA 60 142860658 142860676 TTCCTTCACTGCTGACCTG 60 Novel Rattus norvegicus 81 AC111421.1 ENSRNOG00000060040 ENSRNOT00000083033 1 1 1 60 8 43835780 43835800 TCCATTGTCTGGTCTATTCTG 57 43835825 43835843 ATGTCTGGAAAGCTCTGTG 58 Novel DesignNoJunction Rattus norvegicus 81 RGD1565058 ENSRNOG00000042779 ENSRNOT00000075923,ENSRNOT00000066530 3 2 2 73 X 66516489 66516507 AATCCTCAGCCTTGTTCCA 59 66516254 66516272 CTTGGCAGGATGTTCTTGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07008443.1 ENSRNOG00000059568 ENSRNOT00000081192 2 1 1 81 2 58679076 58679095 TCAGATACAGACGCTCAAGG 59 58679139 58681492 TGCTGCAGACTTGTACCTC 60 Novel Rattus norvegicus 81 SNORD115 ENSRNOG00000059788 ENSRNOT00000089413 3 1 1 61 1 116746403 116746424 GACAACAGAAAGTCAAGAACAG 58 116746363 116746382 TCAGCGTAATCCTATTGAGC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307100 ENSRNOG00000038436 ENSRNOT00000023150,ENSRNOT00000058552 3 2 5 97 2 123761677 123762137 TCATTACAAGATGCCAACGT 58 123762197 123762215 ATGATGAGCTCAGCATCCA 59 Novel Rattus norvegicus 81 AABR07064747.1 ENSRNOG00000058139 ENSRNOT00000083826 2 1 1 64 6 93357152 93357176 GTACATATCTAGATACATGGGACTG 58 93357199 93357218 CAAATGAAGAGTCACGAAGC 58 Novel DesignNoJunction Rattus norvegicus 81 Prdm16 ENSRNOG00000045913 ENSRNOT00000076044 2 1 4 88 5 171667068 171668412 TAAGAACCAGAGCTCACTGG 59 171666999 171667017 CTCAGAGGTGGTTGATGGG 60 Novel Rattus norvegicus 81 Dmrtc1b ENSRNOG00000022286 ENSRNOT00000076843,ENSRNOT00000076934,ENSRNOT00000029245 3 3 3 118 X 73667467 73667486 TTTCACAAGCATGCCAAGAG 60 73666603 73666911 CCATGAGAACTTCCCTCCC 60 Novel Rattus norvegicus 81 LOC100362640 ENSRNOG00000003201 ENSRNOT00000076090,ENSRNOT00000004278 3 2 2 80 X 72076611 72076632 GAACTTCCGTCTGATCTATGAC 59 72075770 72076570 CACAACTTGTACTTGGCCT 58 Novel Rattus norvegicus 81 AABR07073360.1 ENSRNOG00000059178 ENSRNOT00000083006 3 1 1 64 8 13223531 13223552 GACTAAGTTGCTTCTGATGTCG 60 13223581 13223599 TCCTGCTCATCATGTCCAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07042629.1 ENSRNOG00000055757 ENSRNOT00000089516 2 1 1 62 19 426209 426227 CCTGAGGTTCCTGACAGAG 59 427425 427443 GGATTTGGCCTGAAGTGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07025272.1 ENSRNOG00000056947 ENSRNOT00000083943 2 1 2 96 16 31273646 31274410 TACACTCATCAGACCATACCA 58 31273433 31273452 CCTAAGGGTCTAACAGAGCA 59 Novel Rattus norvegicus 81 AC080157.1 ENSRNOG00000058277 ENSRNOT00000089627 1 1 2 80 1 254565986 254568215 GTGGACAAGAAGAGTTAAGGG 58 254571388 254571408 CAGTATTGGTACTTGAGGGAG 58 Novel Rattus norvegicus 81 AABR07019572.1 ENSRNOG00000056176 ENSRNOT00000082995 2 1 1 60 15 109346166 109346184 TCTTAAGGGATGGTTGGGT 58 109346208 109346229 GACAATTTCTCCACCAAGTAGC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07040690.1 ENSRNOG00000055939 ENSRNOT00000092013 1 1 1 60 X 107634272 107634292 GAGAAACATACAGTCGTTCGC 60 107634313 107634334 CCAGTTCTCAAAGGTTTCTTCC 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07004812.1 ENSRNOG00000046332 ENSRNOT00000074995 1 1 1 64 1 158864626 158864644 GCCAGTATCTGTTGTCACC 58 158864674 158864692 CTGAGATTCCACCTCACAC 58 Novel DesignNoJunction Rattus norvegicus 81 Col4a4 ENSRNOG00000014851 ENSRNOT00000077036,ENSRNOT00000077503 1 2 4 100 9 88282556 88282575 TGTAATGTAACCTACCCGGG 59 88280156 88280174 CATCTCATACCAGGAGCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07022168.1 ENSRNOG00000059863 ENSRNOT00000082906 1 1 1 118 13 110678099 110678117 ACAGCATGTGGAAGGAGTC 60 110673859 110673877 CATGACTGCAGAACTTGGG 59 Novel DesignNoJunction Rattus norvegicus 81 Catip ENSRNOG00000037835 ENSRNOT00000080528 1 1 4 83 9 81645199 81645217 AAGTACAAAGACGACCTGG 57 81645263 81645678 TTGAGGTAGCTTGTCTAGGA 58 Novel Rattus norvegicus 81 AABR07058287.1 ENSRNOG00000054367 ENSRNOT00000086715 1 1 1 60 7 108551227 108551246 CCTGGAGAGTTACCCAAAGG 60 108551185 108551203 TTTGAATTGGTGCTGGACG 59 Novel DesignNoJunction Rattus norvegicus 81 SNORA17 ENSRNOG00000058525 ENSRNOT00000090967 1 1 1 63 15 103509982 103510000 AGAGAAGCCGTGTCTACAC 59 103510024 103510045 CGTTAGGCTACAAACCATTCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC135822.1 ENSRNOG00000051012 ENSRNOT00000075395 2 1 1 60 3 150414593 150414611 CTCCTAACAGCAGGAGCAG 60 150414551 150414571 AGGAAAGGATCCTAAAGGCAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC142178.3 ENSRNOG00000053650 ENSRNOT00000083003 2 1 1 60 11 36589481 36589499 TCAACAGTTCGCTTAGGCA 60 36589520 36589541 CTTCCCTTGTTATTGTGTAGCC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000057432 ENSRNOT00000088028 1 1 1 60 18 25401838 25401857 GTCAGTAGACGGCATAACAG 58 25401797 25401815 TGTTCATAGGTCGGAGCAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AC097153.2 ENSRNOG00000049523 ENSRNOT00000074021 2 1 1 66 2 2510219 2510241 CTCCAACTACTGGAACTTATCAG 58 2510268 2510287 CTGTGTTCTTGTACTCTGGG 58 Novel DesignNoJunction Rattus norvegicus 81 RGD1562521 ENSRNOG00000003009 ENSRNOT00000076500,ENSRNOT00000037886 2 2 3 80 X 74012057 74014923 AAGACTGCTGGATACAGCA 59 74011995 74012013 TCCTATGTATGAGGCCCAC 58 Novel Rattus norvegicus 81 AABR07021054.1 ENSRNOG00000048051 ENSRNOT00000075749 3 1 1 60 13 54914980 54914999 AAAGAATCTCCTCCCAGCAG 60 54915022 54915042 GTAATAAAGTACTCGCTGCCT 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07069944.1 ENSRNOG00000058997 ENSRNOT00000077101 1 1 1 60 8 42839619 42839637 CCCTCTTCCTTCTGTTCCT 58 42839574 42839592 AGGATCATGCCCAGATTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07069944.1 ENSRNOG00000058997 ENSRNOT00000077101 2 1 1 60 8 42839618 42839637 CCCTCTTCCTTCTGTTCCTG 60 42839574 42839592 AGGATCATGCCCAGATTCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010306.1 ENSRNOG00000052009 ENSRNOT00000078570 1 1 1 60 2 131957278 131957299 GGTACATTCTTTGCTATTCCTC 57 131957237 131957256 TATAAATGGCACTGACCCAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07072389.1 ENSRNOG00000057440 ENSRNOT00000083280 3 1 2 80 14 32897004 32897170 TCACAATCAACTACAATCGCTG 59 32896945 32896964 GTACCGGACTCTTCTTCAGG 60 Novel Rattus norvegicus 81 AABR07016058.1 ENSRNOG00000056762 ENSRNOT00000084669 2 1 1 61 14 93085262 93085280 GCAGAAGTCCATGGAACCT 60 93086749 93086768 TAGTTGCAGGATTCCATGGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07048624.1 ENSRNOG00000052703 ENSRNOT00000092085 1 1 1 60 5 85124140 85124159 CCGAATCGTGATTCTAGCTG 59 85137788 85137809 AGGATAGTTGTTTGCATAGGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07016841.2 ENSRNOG00000055948 ENSRNOT00000088780 3 1 1 61 15 1161403 1161421 TGCCAGCATGATGAATGTC 59 1152898 1152921 CAAATTAGGTCCACATCTCTACAG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07049681.1 ENSRNOG00000052717 ENSRNOT00000082851 1 1 2 81 5 132700492 132700513 CCTTTAGGCATAAATGTTGTGG 58 132700552 132706049 CATCATTTATGCCTGGATTCAC 58 Novel Rattus norvegicus 81 AABR07063274.1 ENSRNOG00000052838 ENSRNOT00000080102 3 1 1 78 6 26142048 26142066 CCTGACTCTGCTTCTCACC 60 26145360 26145378 ATCTTCTCAGGCCTCTGAG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032141.1 ENSRNOG00000061456 ENSRNOT00000084077 1 1 1 60 18 49224672 49224692 GGATTCTTAGCCTTATGAGCC 58 49223941 49223962 GTGTGAGTATTGTTGAGAAGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07032407.1 ENSRNOG00000059960 ENSRNOT00000089391 3 1 1 60 18 64304002 64304021 CAAACCTGTCTCCAGAAGTC 58 64309467 64309489 CTAGCACTTTCTCCATAAAGGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07032851.1 ENSRNOG00000051901 ENSRNOT00000082803 1 1 1 102 18 85816869 85816887 TTGGAGCTATTGTCGTGTG 58 85814317 85814335 TTCTTCTTGAAGGTGTGGC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07052610.1 ENSRNOG00000052515 ENSRNOT00000091668 2 1 1 60 3 66080129 66080147 ACAAATCTCCACAACTGCA 58 66075094 66075116 GTCCTCATACAGAGTATGTAGTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065530.1 ENSRNOG00000059315 ENSRNOT00000077237 1 1 1 70 6 133642479 133642497 CCATCCTGGATAGTGAACC 57 133632958 133632976 ATTTCTACCCAGGCAATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07065531.5 ENSRNOG00000059660 ENSRNOT00000090095,ENSRNOT00000088572 2 2 2 87 6 133668570 133676831 TGGAATAGGCCAACATCGT 59 133676882 133676900 AGTTGGAAGGTCCTATGGG 58 Novel Rattus norvegicus 81 AABR07035008.1 ENSRNOG00000053067 ENSRNOT00000085147 1 1 3 83 12 3223498 3223516 AGGTGTAGGCTTGACAGTG 59 3223562 3224153 GCTGAAGCCCTTTAAGACAG 59 Novel Rattus norvegicus 81 AABR07035008.1 ENSRNOG00000053067 ENSRNOT00000081463,ENSRNOT00000081902 3 2 3 80 12 3308126 3308146 AAACTCTTCTGGCAAATCACC 59 3308187 3309526 CCTCTTGATGCATTATCGCA 59 Novel Rattus norvegicus 81 AABR07065780.1 ENSRNOG00000059613 ENSRNOT00000084080 1 1 1 77 6 141112600 141112621 GACTGCTAAACATGAAGTTGAG 58 141112438 141112456 GCTGTACTTCACACTGGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07004733.1 ENSRNOG00000056844 ENSRNOT00000080895 2 1 1 60 1 153456476 153456499 CTCAAGTGGAATTAGAAATCAGGG 60 153457373 153457391 CCAATTCAACCAAAGCACG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07066871.2 ENSRNOG00000057011 ENSRNOT00000090558 1 1 1 63 9 20523742 20523760 AAAGTGACATTGACCGGAG 58 20525024 20525042 CCTCACATGTGAAGGATCC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07067031.1 ENSRNOG00000061563 ENSRNOT00000084485 3 1 1 60 9 26953158 26953178 AGTGGATCCAACTTTCTGGAG 60 26952789 26952809 CTAAAGTCGATCACATTGGGA 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07006263.1 ENSRNOG00000056620 ENSRNOT00000089237 3 1 1 60 1 227287288 227287306 AGTGACTGGATGACAAGGC 60 227288922 227288941 ACTTGTGGAATCATGATGGC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07006328.1 ENSRNOG00000059146 ENSRNOT00000087913 2 1 1 60 1 229097647 229097665 TCACCTTGTTCAAGGAGCA 59 229100222 229100240 GTTCCACCATATCCACCGA 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07056464.1 ENSRNOG00000060280 ENSRNOT00000088976 3 1 2 123 7 26145821 26145937 TACAGAGGGCTAGGTCTCC 60 26145716 26145734 TGTCTCACTTACTTCCGCC 59 Novel Rattus norvegicus 81 AABR07042731.1 ENSRNOG00000059356 ENSRNOT00000077150 3 1 1 68 19 5851825 5851843 TCTCAGGAGGAGTCTCCTG 59 5852488 5852510 CCATGTAATTTGTCTGTACCAGG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07056984.1 ENSRNOG00000055599 ENSRNOT00000086764 2 1 1 67 7 50073490 50073508 TATATGCTGCCCTGAGTGG 59 50072562 50072582 ACGTAATAATGCTCAGCTCTG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07057247.1 ENSRNOG00000058262 ENSRNOT00000091745 1 1 1 60 7 62839112 62839130 AAGCGCTTACTCCAAACAG 59 62839874 62839894 CTCATAGAGGTAGGAGAGGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07057648.1 ENSRNOG00000052208 ENSRNOT00000079204 3 1 1 75 7 82394544 82394564 GCTAAATGCTTCAGCATTTGG 59 82411835 82411853 TCATGGTTTGGACACAGAG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07070173.1 ENSRNOG00000053983 ENSRNOT00000079409 1 1 1 60 8 56024591 56024609 AAGTCACTGCCAATCACAC 58 56024034 56024054 AGTTATAGCTTTGTCCTTCGG 58 Novel DesignNoJunction Rattus norvegicus 81 AC112534.1 ENSRNOG00000054883 ENSRNOT00000086970 2 1 1 60 7 126382977 126382995 CTGGAGTCACTCCAGAGAC 59 126383599 126383619 CATGATGGATGATAGATGCCC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07059399.1 ENSRNOG00000054238 ENSRNOT00000085432 1 1 1 89 4 17666212 17666230 AGGATTCAGAGTGAGTCCC 58 17668584 17668602 GAACTCCAGGCTCCATGAG 60 Novel DesignNoJunction Rattus norvegicus 81 AABR07044717.1 ENSRNOG00000055750 ENSRNOT00000082808 1 1 1 60 20 18258560 18258579 CCAAGGAGATTTCTCAACCG 59 18248164 18248185 CGTTTACGAACTAAATGGATGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07045378.1 ENSRNOG00000060093 ENSRNOT00000079308,ENSRNOT00000085769 3 2 2 130 20 45683293 45684506 TCCCACGTATCCAGATACG 58 45684600 45684618 CTCCTTACCCAGACACCAG 59 Novel Rattus norvegicus 81 AABR07045483.1 ENSRNOG00000060038 ENSRNOT00000082374 1 1 1 63 20 48815843 48815861 AATGAAGACCACCACAGTG 58 48814469 48814490 CATGTCCTTGCTTGTTTATGAC 58 Novel DesignNoJunction Rattus norvegicus 81 AC241722.2 ENSRNOG00000059619 ENSRNOT00000091754 3 1 1 70 Y 2027467 2027485 CGATGCTGTGACTCTTCTG 58 2038673 2038694 ACTTTACTCAATCTAGGACAGG 57 Novel DesignNoJunction Rattus norvegicus 81 AABR07071747.1 ENSRNOG00000057660 ENSRNOT00000079586 3 1 1 90 8 129157622 129157640 GAACCTAAGTCGGAGGCAG 60 129156214 129156234 CTCCATCTGAGAAACCATGTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07010353.1 ENSRNOG00000054119 ENSRNOT00000085595 2 1 1 60 2 133028532 133028551 TCTGCAGGAAAGTCCTACAG 59 133026418 133026440 CATCCTCTACCACTTATATGTGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07010985.1 ENSRNOG00000057008 ENSRNOT00000078751,ENSRNOT00000082918 2 2 2 110 2 156311190 156316035 CAAGAGTACTCCAAGGGCA 59 156311098 156311116 CAGGTAGGGAAGGGAAAGC 60 Novel Rattus norvegicus 81 AABR07012081.2 ENSRNOG00000058727 ENSRNOT00000080610 1 1 1 71 2 184916847 184916865 TCCTACACCTGCAAGATGG 59 184916559 184916578 ACCAAATATTTGAGCCAGGG 58 Novel DesignNoJunction Rattus norvegicus 81 AABR07012757.1 ENSRNOG00000060909 ENSRNOT00000083654 1 1 1 77 2 206162761 206162779 GCACCAAGAAGGATTTCCC 59 206157106 206157124 TTTCCTTCTGGTCCTGAGG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013324.1 ENSRNOG00000051979 ENSRNOT00000091184 1 1 1 126 2 233542058 233542076 CTTATCTGCATGTGCGGAG 59 233538790 233538808 GTAAGCTGTGCTTCGTGTC 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013676.1 ENSRNOG00000053087 ENSRNOT00000078313 3 1 1 64 2 249514674 249514692 AGAGAATTAGCTGCACGGA 59 249515151 249515171 TTCAATTTCAGCCTCCATCTG 59 Novel DesignNoJunction Rattus norvegicus 81 AABR07013729.1 ENSRNOG00000051456 ENSRNOT00000080332 3 1 2 82 2 254034695 254038815 CTACGCCAAACTTAAGGAACAG 60 254038858 254038876 TGCACTGTAGCTGTCTGTC 60 Novel Rattus norvegicus 81 Sh3d19 ENSRNOG00000011752 ENSRNOT00000015802 3 1 1 80 2 185423326 185425326 CAAATTCTCAGGATAGCAGCC 59 185425368 185425386 CTAAGTCCTCGCTGGTCTC 59 NA Rattus norvegicus 81 LOC100912421 ENSRNOG00000031027 ENSRNOT00000049593 2 1 1 60 5 137514841 137514860 CTATAACATTGCCACAGCCT 58 137514800 137514821 CACATCCTTGTTCCTTAGACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnf180 ENSRNOG00000043329 ENSRNOT00000066069 2 1 1 80 2 35850675 35853302 TACAGAAGCAGGGTAAATACTC 57 35766321 35766342 GCTCATCATCTGTACTCATCTC 58 NA Rattus norvegicus 81 Gucy1a3 ENSRNOG00000012302 ENSRNOT00000017190 3 1 1 80 2 181051010 181051031 TCTGGCTAACAAATTTGAGTCC 59 181048145 181050974 CAGTCTTTGAGTAACCTGTATGTC 59 NA Rattus norvegicus 81 AABR07012317.1 ENSRNOG00000049173 ENSRNOT00000072995 1 1 1 66 2 193063297 193063315 AAGTGCCCTCCTAAGTGTC 59 193063249 193063267 ACTTGGGAGGACACTTTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab3c ENSRNOG00000011623 ENSRNOT00000015871,ENSRNOT00000086851 1 2 2 80 2 41592182 41684262 CTGTACAAGATTGGTCAACTCAG 60 41592124 41592142 TGTCACATTTGTTTCCGGC 59 NA Rattus norvegicus 81 Fabp5 ENSRNOG00000049075 ENSRNOT00000075493 2 1 1 80 2 93982956 93985223 CTACATGAAGGAACTAGGAGTAGG 60 93982899 93982918 TCGAGGGTAATGATGCAGTC 60 NA Rattus norvegicus 81 Fabp5 ENSRNOG00000049075 ENSRNOT00000075493 3 1 1 80 2 93985258 93985276 CTTAAGGACCTGGAAGGGA 58 93982952 93985214 CAGCCCTACTCCTAGTTCC 59 NA Rattus norvegicus 81 LOC100362724 ENSRNOG00000038965 ENSRNOT00000015146 2 1 1 60 X 20563671 20563689 GACAGACTACGAAGGAGCA 59 20563711 20563731 TTCCTCTTTCACCAATGACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olfm3 ENSRNOG00000017969 ENSRNOT00000024243 1 1 1 80 2 217963588 217971916 AGATACCTTAACTCAGATTAGCCC 60 217971955 217971973 CAAATGCATCGTCCATCGG 60 NA Rattus norvegicus 81 Fam198b ENSRNOG00000010183 ENSRNOT00000013524,ENSRNOT00000088686 3 2 2 81 2 178681570 178699066 ATTAGAGTTCATCCAAGATGGC 58 178699106 178699126 ATGGCTAACATTGCTTGAAGG 59 NA Rattus norvegicus 81 Ankrd34a ENSRNOG00000033741 ENSRNOT00000043535 2 1 1 186 2 198721760 198722346 GGACATTCAGGGATAGGCT 59 198722496 198722514 AAGCGTAGCTTACCCTGTC 60 NA InUTR Rattus norvegicus 81 Arih1 ENSRNOG00000009887 ENSRNOT00000013581,ENSRNOT00000084758 1 2 2 80 8 64233077 64267928 CGAGGTCATCCAGAATCCA 59 64233015 64233039 CTTTCCATTAGCTTCTCTTTATCCC 60 NA Rattus norvegicus 81 Olr1125 ENSRNOG00000026489 ENSRNOT00000039181 1 1 1 60 8 18846420 18846439 TCACTCCCATGATGAATCCT 58 18846462 18846480 AAAGCCTCAACCATGTCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Igll1 ENSRNOG00000025990 ENSRNOT00000029851 1 1 1 121 11 88388466 88388486 GTGTCCACCATATACTTTCCC 58 88388569 88389652 GATCTGGAACAGGAACCTG 58 NA Rattus norvegicus 81 Il10rb ENSRNOG00000028638 ENSRNOT00000061345 1 1 1 80 11 31573101 31577217 ACAACCAGTGATGAAACAACC 59 31577254 31577277 TAGGAAGAGGAAGACTATCAAGAC 59 NA Rattus norvegicus 81 Mir6323 ENSRNOG00000048889 ENSRNOT00000074134 1 1 1 72 11 84827033 84827051 CTGTGAATGCAGTGAGTGC 60 84827087 84827105 GAGATGGAGTTCCAGGACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankra2 ENSRNOG00000048118 ENSRNOT00000073183 1 1 1 80 2 28374389 28376156 CTCTGTTAGCAAATTCTCTGTC 57 28376195 28376215 CTTGTTCAATACGAGTAGCCA 58 NA Rattus norvegicus 81 Ankra2 ENSRNOG00000048118 ENSRNOT00000073183 2 1 1 80 2 28380165 28380185 CCCAACAATTGAAACAGACTC 58 28380225 28380752 ATGACCTGTTGAACACTTCTG 59 NA Rattus norvegicus 81 Ncr3 ENSRNOG00000000854 ENSRNOT00000001139 1 1 1 84 20 5175238 5175256 ATCTACGTGTGCAGAGTGG 60 5175304 5175425 GAGGAGGCTCTTTCTCCAC 60 NA Rattus norvegicus 81 Fgf9 ENSRNOG00000011471 ENSRNOT00000015367 1 1 1 81 15 38342017 38342041 CTGGATTTCACTTAGAAATCTTCCC 60 38342079 38352257 AATTCCAGAATGCCGAATCG 59 NA Rattus norvegicus 81 Tmem125 ENSRNOG00000045872 ENSRNOT00000072816 3 1 1 60 5 137372677 137372696 TTGCATGTTATCTCCCACCT 59 137372719 137372737 CCCTTCCCTAAGACTCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Amelx ENSRNOG00000003965 ENSRNOT00000087268 1 1 5 81 X 26442579 26443954 AGCTATGAGGTGCTTACCC 59 26448479 26448498 CCTGGTACCACTTCATAGGA 58 NA Rattus norvegicus 81 Mir582 ENSRNOG00000040434 ENSRNOT00000062187 2 1 1 61 2 40863756 40863776 TGGATACAGTTGTTCAACCAG 58 40863798 40863817 GGTTCAGTTGTTCAACAGGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir3554 ENSRNOG00000035606 ENSRNOT00000053729 3 1 1 60 5 107206560 107206579 CAGGTTCTCAGTTCAACAGC 59 107206519 107206537 CCTGAAACTTGGAACTGGA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nup155 ENSRNOG00000013411 ENSRNOT00000082694,ENSRNOT00000046069 1 2 2 80 2 57209151 57210078 ACAGTTTGGACACATGCAG 59 57210122 57210142 TGTCACTGTCAATTGTAAGCC 59 NA Rattus norvegicus 81 AC118954.1 ENSRNOG00000058912 ENSRNOT00000090993 2 1 1 80 20 7333893 7333912 CTGACACCCGTTTAAGACTG 59 7333952 7335368 TGTAGCCACATAATTTGTCCTC 59 NA Rattus norvegicus 81 Mospd2 ENSRNOG00000003350 ENSRNOT00000084395,ENSRNOT00000004494 1 2 2 80 X 31167572 31167592 ACGAGTAAGAATGAGATCCAG 57 31167632 31171997 ATACTTGAAAGGATCTGTCCC 57 NA Rattus norvegicus 81 RGD1563714 ENSRNOG00000031494 ENSRNOT00000050195,ENSRNOT00000089166 2 2 2 80 5 136074065 136074897 AAGACTATTGGGATCCTGGC 59 136074004 136074022 CATCAGGCTGTGAATCACG 59 NA Rattus norvegicus 81 Dact2 ENSRNOG00000022921 ENSRNOT00000080065,ENSRNOT00000035125 3 2 2 82 1 56163384 56163403 ATAAGTGAACTGCAGCTGGA 60 56162282 56163340 TCATAGAAACCTGAGCTGGG 59 NA Rattus norvegicus 81 Smcp ENSRNOG00000009326 ENSRNOT00000012371 1 1 1 124 2 192776116 192780486 CCTGATCAGAAACTCCAACTC 59 192776012 192776030 TGATTTCTGCAGACAGCAC 59 NA InUTR Rattus norvegicus 81 Grpel1 ENSRNOG00000006593 ENSRNOT00000008932,ENSRNOT00000082180 2 2 2 84 14 79460022 79460040 TACAAACGTGCTTTGGCAG 59 79459594 79459976 CCTGGATGCCATATAACTTGG 59 NA Rattus norvegicus 81 Zdhhc14 ENSRNOG00000029049 ENSRNOT00000043521 1 1 1 80 1 46544488 46578219 CTGGAAAGGCAAATAGACATCG 60 46578256 46578278 GATGATGACTTCTTTGGTTCTGG 60 NA Rattus norvegicus 81 Ces2i ENSRNOG00000012034 ENSRNOT00000090543,ENSRNOT00000015997 3 2 2 80 1 282569948 282569968 TCTGAAGACTGCCTGTATCTC 59 282570009 282570737 GATCCATACCATCACAGGCA 60 NA Rattus norvegicus 81 Map4k2 ENSRNOG00000021061 ENSRNOT00000064798 1 1 1 80 1 221713916 221713934 ATGTTTCCAGACACCATCC 57 221713976 221714100 CACTTGGTGAAATTGGATCTC 57 NA Rattus norvegicus 81 Pir ENSRNOG00000003674 ENSRNOT00000004884 2 1 1 80 X 31863328 31872014 GGAGATGTGTATATTGGGCCT 60 31863268 31863286 AGTGTCACCTTCTCCAAGC 60 NA Rattus norvegicus 81 mageb1l1 ENSRNOG00000048202 ENSRNOT00000074089 1 1 1 60 X 54865194 54865218 GATCTACTTAAACAACTACTGTGCC 60 54865158 54865179 TAACATATTCAGGAAGTGCCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 mageb1l1 ENSRNOG00000048202 ENSRNOT00000074089 3 1 1 60 X 54864979 54864997 GCAAGAGAAAGGTGATGGA 58 54864937 54864955 GAGTAAGAACTGGGCATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dppa3l1 ENSRNOG00000022376 ENSRNOT00000036219 1 1 1 60 8 60683562 60683581 CAGATGAAAGACGAAGAGGG 58 60683521 60683540 CTAGTGTTTCTGGTTGTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gde1 ENSRNOG00000050445 ENSRNOT00000073233 1 1 1 80 1 188401617 188401636 CTGGCCGATTATGTGATCTG 59 188398199 188401577 GGAACTCATTTCTGAGTCTGTG 59 NA Rattus norvegicus 81 Olr507 ENSRNOG00000055270 ENSRNOT00000090035 3 1 1 60 3 73800680 73800701 TATGTATGTGCAACCTAAGACC 58 73800641 73800661 AAAGATGGAAGCCACTTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir1912 ENSRNOG00000046748 ENSRNOT00000071202 1 1 1 60 X 118130663 118130681 GGATGTGCTCATTGCATGG 60 118130705 118130723 TCTCACTGCATGTTCTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5sl ENSRNOG00000020596 ENSRNOT00000027960 2 1 1 80 1 82414702 82414720 TTCCATGACGTCCAGACTC 59 82414763 82415968 CCTGTAGGATCGATTCTCCA 58 NA Rattus norvegicus 81 Olr347 ENSRNOG00000057869 ENSRNOT00000089953 3 1 1 60 1 229877677 229877697 AACCTGGGATTGATTCTACTG 58 229877716 229877737 AAATATACATGGGACTGTGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr486 ENSRNOG00000029884 ENSRNOT00000052306 3 1 1 60 3 73560826 73560847 TGTCCAGCCTAATTCTAGTCAC 60 73560787 73560807 GGTATAGAATACGGAAGCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dbt ENSRNOG00000015029 ENSRNOT00000020267 3 1 1 81 2 219587913 219588925 ATCACCTACAAGGCCTCTC 59 219588970 219588988 GAACGTTCTTCACGTTGGG 60 NA Rattus norvegicus 81 RGD1306233 ENSRNOG00000010152 ENSRNOT00000013473 1 1 1 80 3 7050973 7050992 CTGTTTCCATGTACAGGACC 58 7048178 7050933 GATAATATGCTTTCGGCATCTC 58 NA Rattus norvegicus 81 Usp47 ENSRNOG00000026754 ENSRNOT00000065712,ENSRNOT00000087461 1 2 2 80 1 176918262 176918281 CATGTTTGATCTGCTGTTGG 58 176918323 176919883 ACTTTCACCATCACTTCTCC 58 NA Rattus norvegicus 81 Ceacam11 ENSRNOG00000017620 ENSRNOT00000023686 2 1 1 81 1 79399735 79402689 CCTCAAAGTAAACAAACCTGGA 59 79402731 79402749 CTTCTTCGAGGTCCAGGTC 60 NA Rattus norvegicus 81 Paip2b ENSRNOG00000014092 ENSRNOT00000019399 2 1 1 80 4 115488923 115492858 ATTTCAACAGACAGGTGGAG 58 115488862 115488880 CCTCTTCATCCAGCATCTC 57 NA Rattus norvegicus 81 Snx19 ENSRNOG00000014719 ENSRNOT00000020041 1 1 1 80 8 31507460 31529144 AACGCTAGTTCAGAGGTGG 59 31529188 31529206 AGAAGGCGGAGGTATTGTG 60 NA Rattus norvegicus 81 LOC103692171 ENSRNOG00000054176 ENSRNOT00000083560 2 1 1 82 4 114815325 114815343 GTGAACTTGGTGACTTCCG 59 114815389 114815553 GACATTGTAGCTGCCATGC 60 NA Rattus norvegicus 81 Zbtb22 ENSRNOG00000000476 ENSRNOT00000000558 1 1 1 60 20 5478293 5478311 ATCTTCAGCCGCTACTACC 59 5478251 5478269 ACAAGGGACAGAGACAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mcpt8l2 ENSRNOG00000049096 ENSRNOT00000073555 3 1 1 98 15 34623319 34623338 AAACACCCAGGTCATCTCTG 60 34623017 34623258 TTGCGTTCCAACTTCAGGA 60 NA Rattus norvegicus 81 Eif2b3 ENSRNOG00000018375 ENSRNOT00000024841 3 1 1 80 5 135892751 135908777 AAACTTAAGACTGATGTGCTGG 59 135908818 135908836 TCTGAACAGGTCCACAACC 60 NA Rattus norvegicus 81 C1qtnf9 ENSRNOG00000013793 ENSRNOT00000018533 1 1 1 81 15 41070268 41070291 CTTTATTTACAGTGTGAGGGTTCC 60 41070331 41074318 ACACGGTCTGGACTTAACC 59 NA Rattus norvegicus 81 Col5a1 ENSRNOG00000008749 ENSRNOT00000086352,ENSRNOT00000012334 3 2 2 80 3 6465058 6465076 ATGTTGCCTACCGAGTCTC 59 6465118 6471268 CCTCAGGAAAGTCAGACTCAG 60 NA Rattus norvegicus 81 Sfrp2 ENSRNOG00000009465 ENSRNOT00000012658 2 1 1 77 2 182726657 182726678 GACAACGACATAATGGAAACTC 58 182730107 182730130 GTTGATGTAGGTTATCTCCTTCAC 59 NA DesignNoJunction Rattus norvegicus 81 Sfrp2 ENSRNOG00000009465 ENSRNOT00000012658 3 1 1 79 2 182726653 182726673 GGATGACAACGACATAATGGA 58 182730107 182730128 TGATGTAGGTTATCTCCTTCAC 57 NA DesignNoJunction Rattus norvegicus 81 Tmem214 ENSRNOG00000008812 ENSRNOT00000011838 1 1 1 80 6 26873064 26873084 GTACCGCATCTGTATTCAAGC 60 26872670 26873023 AGAAGCTCCAGGAACTTGTC 60 NA Rattus norvegicus 81 Tmem214 ENSRNOG00000008812 ENSRNOT00000011838 3 1 1 80 6 26873690 26873710 CCAGCTATCTCAACTACAAGC 59 26873436 26873650 GGCTGTAGGGATAATCATGTG 58 NA Rattus norvegicus 81 Smpd1 ENSRNOG00000017977 ENSRNOT00000024224 2 1 1 80 1 170384064 170384466 CAACTATGGGCTGAAGAAGGA 60 170384507 170384526 GCTATGTTCAGCATCTTGCA 59 NA Rattus norvegicus 81 Tfg ENSRNOG00000001633 ENSRNOT00000088152,ENSRNOT00000048417 3 2 2 80 11 46184986 46185004 TGATGCAGCGAGTATTCAG 58 46185046 46191191 TAAGATCTCCATCCTCATCCT 57 NA Rattus norvegicus 81 Kctd10 ENSRNOG00000047896 ENSRNOT00000073019 3 1 1 93 12 48005834 48006923 CCTACACCAGCAATTCCGA 60 48006979 48006998 TTTATGAACAGGACCCTCCC 59 NA Rattus norvegicus 81 Neil2 ENSRNOG00000010696 ENSRNOT00000014198 3 1 1 84 15 46377581 46377600 TCTGGGTGAATGACTTCTCC 59 46375404 46377534 AAATGGAGTACCAGCCTGG 59 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000049859,ENSRNOT00000047817,ENSRNOT00000002220,ENSRNOT00000002223,ENSRNOT00000063864,ENSRNOT00000070871,ENSRNOT00000072140 2 7 7 80 11 46341094 46341112 TGCAGAGCCGAAGTATCTG 60 46336078 46341050 GTGCGAGATTTACCTGAGC 59 NA Rattus norvegicus 81 Rn60_X_0595.2 ENSRNOG00000051308 ENSRNOT00000076448 3 1 1 60 X 58804733 58804753 GCTTTAGATTCAGGAAAGGCA 59 58804693 58804713 CTACATTCTCAAGAGTCACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nbn ENSRNOG00000008580 ENSRNOT00000012377 1 1 1 80 5 29653627 29653648 GATTTAATAGGTCACCATGCTC 57 29653688 29655282 TTGTTGTTTCTGTACCTCCA 57 NA Rattus norvegicus 81 Mcm2 ENSRNOG00000016316 ENSRNOT00000022231 1 1 1 80 4 120830248 120830267 GGGCATGAAGACATCAAGAG 59 120829812 120830206 AACTTTGTGCTTTCCACCTG 59 NA Rattus norvegicus 81 Dnajc19 ENSRNOG00000049819 ENSRNOT00000071944 2 1 1 80 2 120506283 120506783 ATACTAGGTGTAAGCCCTACTG 59 120506824 120506842 GTCTGGGTGGTTTAAGAGC 58 NA Rattus norvegicus 81 Snrpd2 ENSRNOG00000015844 ENSRNOT00000021221 3 1 1 88 1 80057206 80058513 CCTTCACCATGAGTCTCCT 58 80058564 80058583 ACCTGTGTTGAATTCCTCCT 59 NA InUTR Rattus norvegicus 81 Rab9a ENSRNOG00000030443 ENSRNOT00000050018 3 1 1 159 X 29525348 29525366 GAATAGCTCCCAGGACGTC 60 29546256 29546274 GAACTCTTGCCAACTCCAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ndufv2 ENSRNOG00000042503 ENSRNOT00000016965 2 1 1 80 9 113877316 113879089 ATAAACGACGACTACTACGAGG 60 113877257 113877275 TGGAACTTTCCCAGCTCTG 60 NA Rattus norvegicus 81 AABR07002094.1 ENSRNOG00000046802 ENSRNOT00000072667 3 1 1 60 1 66389045 66389066 CATCATATCAAACCACCTGGTC 59 66389086 66389105 CAAAGAGGTCACTGTCTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Glce ENSRNOG00000025372 ENSRNOT00000038641 2 1 1 80 8 67010375 67020009 AACAGTTTATTGCTCCAGAAGC 60 67010316 67010338 GGTCGAATGAGATAATGAAGTCC 59 NA Rattus norvegicus 81 Zc2hc1b ENSRNOG00000042705 ENSRNOT00000066725,ENSRNOT00000081112 3 2 2 80 1 7312544 7312563 ACTCTAGCCTTGAAAGAGGG 59 7297585 7312507 GTAAGGGCATTGAATATAATCTGGG 60 NA Rattus norvegicus 81 Taar6 ENSRNOG00000016089 ENSRNOT00000021529 2 1 1 60 1 22536351 22536371 CTTGGTGATGATATCCATCCT 57 22536393 22536411 AATGAGGAAGTTGGTGGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_7_0063.1 ENSRNOG00000048677 ENSRNOT00000071429 3 1 1 60 7 6157869 6157890 CTTGAAGATTTCATGCTCAGAC 58 6157910 6157929 CACTGCACAAACAATCACCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910595 ENSRNOG00000050717 ENSRNOT00000074413 3 1 1 60 8 43054952 43054972 TATTGATCTCTGCCATTCCAC 58 43054912 43054930 CTCTGCCACAAAGTTCACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Guca2a ENSRNOG00000008849 ENSRNOT00000011867 1 1 1 88 5 138685645 138685663 CATGAATGCCTGGTTGCTG 60 138685715 138686510 AAAGGTCTCCATCCTGCAC 60 NA InUTR Rattus norvegicus 81 LOC100910567 ENSRNOG00000050494 ENSRNOT00000072617 1 1 1 80 2 150354650 150354669 GTAGATCCTACCCGAATTGC 58 150354712 150364439 AATCTGCACCTGTTGTGTC 58 NA Rattus norvegicus 81 Defb30 ENSRNOG00000038758 ENSRNOT00000059211 3 1 1 86 15 46221751 46223337 GTTCCTCCAGTTAGAAGTGGA 59 46221685 46221703 TACATTCCTGCAATGCCCT 59 NA Rattus norvegicus 81 Gga2 ENSRNOG00000018599 ENSRNOT00000025309 1 1 1 80 1 191966413 191966432 GACTTCTCAAGAGCAACCAC 59 191965902 191966372 TTTCTTGTTCCTCCTTGACCA 60 NA Rattus norvegicus 81 RGD1559904 ENSRNOG00000014664 ENSRNOT00000061385 2 1 1 80 5 25111676 25113200 ATTCAACAACAGGACTGCG 59 25113242 25113262 GCCTGAAATGGAGTAAACCAC 60 NA Rattus norvegicus 81 Olr1345 ENSRNOG00000047633 ENSRNOT00000049347 1 1 1 60 9 99680833 99680852 TAGCCATCATCCTCACTGTC 59 99680792 99680812 AGGAAGTAGTACATGGGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prl7b1 ENSRNOG00000016742 ENSRNOT00000088868,ENSRNOT00000022447 3 2 2 81 17 39160772 39161327 TTGCCAAGAAGGTTAAACATGG 60 39161368 39161387 TTGGTTGACTGTAACGATGC 59 NA Rattus norvegicus 81 Mir764 ENSRNOG00000040427 ENSRNOT00000062180 3 1 1 60 X 118123297 118123316 CATGCCTACACATACATGGA 58 118123336 118123357 CAACGAAATCAATCATGGTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Clca4l ENSRNOG00000036877 ENSRNOT00000055362 2 1 1 80 2 250802934 250802955 TAGTTCCCATAACCTGGAAGTC 59 250802679 250802894 CAACTATGACGTCTGCTTGG 59 NA Rattus norvegicus 81 S1pr5 ENSRNOG00000020901 ENSRNOT00000028380 2 1 1 70 8 22269978 22269996 CCTATGTGCTCTTCTGCGT 60 22269926 22269944 AATCCTTGCATAGAGCGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ufsp1 ENSRNOG00000051006 ENSRNOT00000073356 1 1 1 60 12 22471624 22471642 TATTCACACTTCACAGCGG 58 22471582 22471600 ACTGAGCATCTGCATCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361811 ENSRNOG00000032803 ENSRNOT00000047936 2 1 1 60 X 10431170 10431189 CATCAAGCACTCAAAGAGCA 59 10431210 10431230 CTTCTGATCGTTCTCCTTCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lmo3 ENSRNOG00000047450 ENSRNOT00000072450 3 1 1 83 4 172951763 172992343 CAGAGACTACCTGAGGCTG 59 172992390 172992408 CGCATCACCATCTCAAAGG 59 NA Rattus norvegicus 81 Atl2 ENSRNOG00000006523 ENSRNOT00000091063 3 1 3 82 6 2584742 2593685 ATAACAAGGATTCGCAAAGC 57 2593729 2593748 TTCTCTTTCACAACCACCTC 58 NA Rattus norvegicus 81 Il1r2 ENSRNOG00000014378 ENSRNOT00000019415 3 1 1 80 9 46876370 46876390 GGCTAACAGCACGTTTATCTC 60 46876430 46878143 TCATTCTCTGAGTACTGGTGG 59 NA Rattus norvegicus 81 Ppil1 ENSRNOG00000000523 ENSRNOT00000068527 2 1 1 126 20 6863206 6864346 CTACCTGGAGACTAGCATGG 59 6863099 6863117 GATCCTGTGGAACTTGGTG 58 NA Rattus norvegicus 81 Sncb ENSRNOG00000018039 ENSRNOT00000024357 1 1 1 89 17 10385492 10388433 TCTACGTCGGAAGCAAGAC 60 10388642 10388660 CTCCCAGATGAGATGCCTG 60 NA Rattus norvegicus 81 Trpm6 ENSRNOG00000013053 ENSRNOT00000017892 3 1 1 80 1 234560133 234560151 GTACCCAAATGCTGCTGAC 59 234555987 234560091 TGCTGATGATTATCTTCAGCC 58 NA Rattus norvegicus 81 Ppidl1 ENSRNOG00000037230 ENSRNOT00000056255 3 1 1 60 9 121457206 121457225 GGGAAACATGTGGTATTTGG 57 121457248 121457266 TTTCAAGCATCCTTGCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r80 ENSRNOG00000046199 ENSRNOT00000074905 3 1 1 60 4 88026744 88026762 GTGGTCATTTACTGGGTGG 58 88026781 88026804 CATACATCCATAACAGGATTGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pafah1b3 ENSRNOG00000020481 ENSRNOT00000027774 1 1 1 84 1 82165546 82165759 GATGTCTCTGCACCATCGA 60 82165480 82165498 TAGCTGAACCAAGGAGTCC 59 NA Rattus norvegicus 81 Ucp2 ENSRNOG00000017854 ENSRNOT00000024156 3 1 1 81 1 165511150 165511168 CGGAGATACCAGAGCACTG 60 165511213 165511306 GAGAGGTCCCTTTCCAGAG 59 NA Rattus norvegicus 81 Cecr2 ENSRNOG00000011566 ENSRNOT00000015499 2 1 1 80 4 153306835 153306856 GCAAGAGCAGATGTTAAAGGAG 60 153306895 153308768 CTCCTCTTAGCTCGATCTTCC 60 NA Rattus norvegicus 81 MGC116197 ENSRNOG00000033341 ENSRNOT00000046852,ENSRNOT00000089904 2 2 2 87 9 9142231 9142252 CAGAAGTGTAAATTCGAGAGGG 59 9141179 9142183 ATTCGACATCCAGCCTGAG 60 NA Rattus norvegicus 81 Glmp ENSRNOG00000019281 ENSRNOT00000026153 1 1 1 81 2 187700451 187700469 CTTCTGTGCCTTCAACCTG 59 187700514 187700632 AAGCATTGACCAGCAAAGG 59 NA Rattus norvegicus 81 Ankrd6 ENSRNOG00000007110 ENSRNOT00000088179,ENSRNOT00000081748 2 2 3 80 5 48057255 48058371 AAACGTCAGATGTCATTGGTG 59 48057195 48057213 TCCCGAAAGTCTCAACTCC 59 NA Rattus norvegicus 81 RGD1559600 ENSRNOG00000042232 ENSRNOT00000066597 1 1 1 80 1 189348264 189359694 ATGGGCTACTCAAGATGCA 59 189348202 189348220 GAGTCCAAGTCTCTGAGCC 60 NA Rattus norvegicus 81 Utp18 ENSRNOG00000002644 ENSRNOT00000003582 1 1 1 80 10 81570876 81571280 GGATTAAAGACCAAAGAGCTG 57 81570816 81570838 CTTACTATCTGAGGAGAATGTGG 58 NA Rattus norvegicus 81 Dnajb13 ENSRNOG00000017975 ENSRNOT00000024256 2 1 1 80 1 165521211 165521229 CGAGACCTCTATTTGTCCC 57 165520104 165521167 TTCATTTAGCACCCTTCGG 58 NA Rattus norvegicus 81 Fam8a1 ENSRNOG00000026120 ENSRNOT00000060500,ENSRNOT00000036560 3 2 2 80 17 18418143 18420134 CAGTGGGATAAAGGACATCTC 58 18418083 18418102 AGGTCTTCCATTGATGTGTC 58 NA Rattus norvegicus 81 Siah2 ENSRNOG00000013703 ENSRNOT00000018488 2 1 1 80 2 148875515 148891254 TTTCCCTGTAAGTATGCCAC 58 148875454 148875474 TTCACAGATGTCTTCATGCTC 59 NA Rattus norvegicus 81 Kcnq1 ENSRNOG00000020532 ENSRNOT00000027875,ENSRNOT00000076661,ENSRNOT00000087153 2 3 4 88 1 216379934 216379952 GTTTGCACTGAAGGTCCAG 59 216380004 216381568 TCCATGCAGTCTGGATGAG 59 NA Rattus norvegicus 81 Kcnq1 ENSRNOG00000020532 ENSRNOT00000076526 3 1 4 99 1 216295152 216295170 GATGCTAGCTCCTGAGTGG 60 216295232 216335844 AGAACAATGAGGAAGCCCTC 60 NA Rattus norvegicus 81 Jade2 ENSRNOG00000004956 ENSRNOT00000082585,ENSRNOT00000043343 1 2 2 80 10 37290994 37291014 CAAGAATGGGAGAAAGGTGTG 59 37286560 37290952 TAGTGGTGGGAGGATCCTC 60 NA Rattus norvegicus 81 Pnpla6 ENSRNOG00000000977 ENSRNOT00000001298,ENSRNOT00000072952 3 2 2 80 12 2095651 2095669 CGAGTACCTTCGTCCATCC 60 2095709 2096454 TGGTAACCCACATCATAGATCTG 60 NA Rattus norvegicus 81 Sspo ENSRNOG00000025848 ENSRNOT00000035906 1 1 1 80 4 78091868 78092006 ATCCCTGTTCAGTGAATGC 58 78092050 78092068 ATGGAGCAAAGATTGGCTG 59 NA Rattus norvegicus 81 Msln ENSRNOG00000019445 ENSRNOT00000026395 1 1 1 80 10 15121871 15122135 GGACACAGAACAGAAAGCC 59 15121809 15121831 TCCCAATTCTGGTAGAAGATGAG 60 NA Rattus norvegicus 81 LOC100361637 ENSRNOG00000048099 ENSRNOT00000066802 2 1 1 94 15 29903540 29903711 AATACTCAGAAGGAGCAATGGA 59 29903467 29903485 GATAGGTGCAGTTCAGCAC 59 NA Rattus norvegicus 81 Clgn ENSRNOG00000003755 ENSRNOT00000005071 3 1 1 80 19 24575601 24575620 GCAGAAACTATAGAAGGGCA 57 24575661 24576521 CTCATCAGCATCCTTCATCTC 58 NA Rattus norvegicus 81 Pask ENSRNOG00000016888 ENSRNOT00000022748 1 1 1 80 9 100456176 100458429 CATCTTCCGACAACTGGTG 59 100456114 100456135 ATGTTCTCATCCTTGATGTCTC 58 NA Rattus norvegicus 81 Pask ENSRNOG00000016888 ENSRNOT00000022748 2 1 1 80 9 100469229 100469250 CAATTTATGGCATCAACCACAG 59 100467729 100469188 AAGTGATGTTCTTGCCCAG 58 NA Rattus norvegicus 81 AABR07005886.1 ENSRNOG00000053539 ENSRNOT00000091049 2 1 1 93 1 204092253 204096264 TCCTACTTCGTGGAGTCAG 58 204096320 204096339 TGGCCTTGAACTTGAAAGAG 58 NA Rattus norvegicus 81 Osbp ENSRNOG00000021057 ENSRNOT00000065411 3 1 1 80 1 228408716 228408735 CTACAGCCTCAACTTGTGGA 60 228408776 228412865 TTAAAGTTTACCGGCATTGGG 59 NA Rattus norvegicus 81 Olr733 ENSRNOG00000056633 ENSRNOT00000087245 2 1 1 60 3 78974176 78974194 ATGGACGGGAGGATTTGTG 60 78974134 78974154 GAAGGGCAAAGGAAAGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zcchc10 ENSRNOG00000006943 ENSRNOT00000009098 1 1 1 80 10 38664161 38664180 CGAAATGAATCCAAGAGCTG 57 38664223 38668070 TTGCTTATTGGCTTCACCT 57 NA Rattus norvegicus 81 Atp8a2 ENSRNOG00000008053 ENSRNOT00000011451 2 1 1 80 15 40351471 40352031 TACTACAGCAAATCCCAGAC 57 40351410 40351431 CTGCAATCGTTAGAATGATGAC 58 NA Rattus norvegicus 81 Trmt1 ENSRNOG00000002914 ENSRNOT00000003941 2 1 1 80 19 25804581 25804830 AGGGAATCCAGATCAAGGTC 59 25804871 25804891 CTGTTTCCTCCTCTTGATCAG 58 NA Rattus norvegicus 81 LOC100360679 ENSRNOG00000033152 ENSRNOT00000046010 3 1 1 60 10 104521921 104521939 AGAAGGACGTGAAGGATGG 59 104521879 104521897 AGCTTGTTGTCTAGACCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rad51 ENSRNOG00000037302 ENSRNOT00000056432 2 1 1 80 3 110941245 110941263 CCATGTTTGCTGCAGATCC 60 110941307 110941877 TCCTCAGGTATAGCCTGGT 59 NA Rattus norvegicus 81 Olr135 ENSRNOG00000043392 ENSRNOT00000067478 2 1 1 60 1 169116578 169116596 CTCTGCATCGTGACTTCCA 60 169116617 169116638 GCACATAAGAGACAACAATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnaseh2a ENSRNOG00000003504 ENSRNOT00000046181,ENSRNOT00000083159 1 2 2 80 19 26080492 26080641 CTGAAAGTAGCAGACTCAAAGAC 60 26080434 26080452 AAAGTCTCCGTCCTCTTCC 59 NA Rattus norvegicus 81 Ptk2b ENSRNOG00000027839 ENSRNOT00000030007,ENSRNOT00000030036 3 2 2 80 15 42862345 42862363 TGCCAGAAGACTTCATGGA 59 42860340 42862301 TGTAGTCATTCCGGAGCTG 59 NA Rattus norvegicus 81 RGD1565844 ENSRNOG00000004120 ENSRNOT00000020999 2 1 1 80 X 32496308 32496327 TGAACATGACTAGACAGCGT 59 32496370 32496496 CCAGCTGAAGATTCACTGG 58 NA Rattus norvegicus 81 AC130940.1 ENSRNOG00000046229 ENSRNOT00000068212 2 1 1 131 15 33637413 33637432 ATTTGAGTGTCCTGAGGACC 60 33637866 33637884 GAAGGACGAGGAGATGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Cd276 ENSRNOG00000033608 ENSRNOT00000042681 2 1 1 124 8 63332704 63335215 CCTTACAGGAGCTGTGGAG 60 63332598 63332616 TGAGGTTGAGCTGTCTCAG 59 NA Rattus norvegicus 81 Kif18b ENSRNOG00000021713 ENSRNOT00000084128,ENSRNOT00000032339 3 2 2 80 10 91019095 91019113 AACAGGATGTGTTCCAGCA 60 91018417 91019052 CATAGGCAAACACTGAGCAG 59 NA Rattus norvegicus 81 Jtb ENSRNOG00000016379 ENSRNOT00000064752 1 1 1 80 2 189592238 189592469 CGAGGAGAAGCTATCAGTGAG 60 189592510 189592529 GGAGTACACTCTTCGGTCAC 60 NA Rattus norvegicus 81 Psme2 ENSRNOG00000019246 ENSRNOT00000026279 3 1 1 80 15 34268636 34268752 CAAGGATGATGAGATGGAAACC 59 34268490 34268509 AGAAGCTTCTCATTCCCAGG 60 NA Rattus norvegicus 81 Ube2d4l1 ENSRNOG00000029497 ENSRNOT00000045603 1 1 1 60 X 83570579 83570600 TCCAAATATCAACCGTAAGGGA 59 83570621 83570639 TGGTGACCACTCAGATCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mrpl19 ENSRNOG00000006968 ENSRNOT00000009308 2 1 1 80 4 112705238 112705256 TTGCATCAAGCGATCAGGA 60 112703842 112705195 CAAATCTCCACACCTTGTCC 59 NA Rattus norvegicus 81 Zfp869 ENSRNOG00000033351 ENSRNOT00000015611 2 1 1 80 16 21447024 21447485 GCCTGAAGTAAATCTAAGGGAC 59 21447522 21447544 GGCTTCTCTTCATATTCCTTGTG 60 NA Rattus norvegicus 81 Pax9 ENSRNOG00000008826 ENSRNOT00000011802 1 1 1 80 6 77608968 77608986 CGTACCCTCTGTGAGTTCC 60 77609029 77609050 TGCTTATAGGACGTACCCTG 59 NA Rattus norvegicus 81 S100vp ENSRNOG00000028310 ENSRNOT00000023564 3 1 1 84 2 190629350 190631570 TTCTAAAGGCAATGGATGAAGC 59 190631612 190631633 ATGTCCCAAATCTCATCAAAGG 59 NA Rattus norvegicus 81 LOC100912272 ENSRNOG00000050096 ENSRNOT00000070889 2 1 1 60 11 28597801 28597821 GTTGCTACGTTCCAAGTTACC 60 28597761 28597779 CCATAGGTCAGATAGCCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910293 ENSRNOG00000048474 ENSRNOT00000073226 3 1 1 60 2 46067052 46067075 CATCTCATATGTTGGGTGTATGAC 60 46067091 46067112 CTCAGAAATGACACAGAAACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Akap2 ENSRNOG00000011504 ENSRNOT00000015576 1 1 2 80 5 74972260 74981655 GATGATAGTAGTGTCCTGGAGG 59 74981696 74981714 ATAAATCCCTGCCTCCCAG 59 NA Rattus norvegicus 81 Akap2 ENSRNOG00000011504 ENSRNOT00000015576 2 1 2 80 5 74972261 74981655 ATGATAGTAGTGTCCTGGAGG 58 74981697 74981715 CATAAATCCCTGCCTCCCA 59 NA Rattus norvegicus 81 Gna12 ENSRNOG00000001235 ENSRNOT00000001654 3 1 1 80 12 15890525 15934049 CAACATCCTTAAGGGCTCGA 60 15934091 15934110 TTCTCGTTCTCAGAGTGCTG 60 NA Rattus norvegicus 81 Ripk1 ENSRNOG00000017787 ENSRNOT00000023962 1 1 1 80 17 31560581 31560601 ACGAAGGTGTAATACACAAGG 58 31558746 31560542 CAAGATCGGCTATCTTAATGTG 57 NA Rattus norvegicus 81 Cav2 ENSRNOG00000057713 ENSRNOT00000080271 3 1 1 80 4 44574082 44578623 GCACATCTGGATCCTAATGC 59 44578664 44578684 GTCACACTCTTCCATATCGTC 58 NA Rattus norvegicus 81 AC120310.1 ENSRNOG00000045684 ENSRNOT00000071131 1 1 1 80 17 14711646 14711854 TGTCTATACCTCCTATTCTCTACTC 58 14711589 14711610 CTTGTTGTTCTGAAGAATCACC 58 NA Rattus norvegicus 81 Brd3 ENSRNOG00000007681 ENSRNOT00000065867,ENSRNOT00000084491 1 2 2 80 3 6013942 6013962 AAGACACTCTGGAAACATCAG 58 6013123 6013902 ATGATAATCAGGCAGGTTCAG 58 NA Rattus norvegicus 81 Rab7a ENSRNOG00000012247 ENSRNOT00000016432,ENSRNOT00000077624 3 2 2 80 4 119916768 119924482 ACTTGTTACCATGCAGATCTG 58 119916708 119916726 TCTGCACCTCTGTAGAAGG 58 NA Rattus norvegicus 81 Slc18a1 ENSRNOG00000011992 ENSRNOT00000016193 2 1 1 80 16 22374171 22374192 GTGATGTATGAATTTGTGGGCA 60 22374233 22374459 AAGTTGGAGAGCTCCATCC 59 NA Rattus norvegicus 81 Mrs2 ENSRNOG00000017545 ENSRNOT00000023787 1 1 1 80 17 42069744 42069762 AGACTTGAGGTTTCAGCAC 58 42069806 42073176 ACAGCCTTCAAGTACTCCA 58 NA Rattus norvegicus 81 LOC100363943 ENSRNOG00000033056 ENSRNOT00000050658 3 1 1 82 7 15821386 15821578 ACCTTCGCAAACATGAACG 60 15821322 15821340 GCTGGAATAGGTGAAGGCT 60 NA Rattus norvegicus 81 RGD1309870 ENSRNOG00000037621 ENSRNOT00000038733,ENSRNOT00000057067 2 2 2 84 14 91606972 91606990 TTCATTTCACAGCCACCCA 60 91607037 91613274 AGTAAGAGGCGGTTCATCTC 59 NA Rattus norvegicus 81 Wee1 ENSRNOG00000010017 ENSRNOT00000013362 2 1 1 80 1 174772347 174775386 GAATGAATACTGTAATGGTGGG 57 174775425 174775445 TCTGCTTCAGTAAAGTAGCTC 58 NA Rattus norvegicus 81 Mlana ENSRNOG00000036608 ENSRNOT00000054764,ENSRNOT00000089563 1 2 2 86 1 247871969 247876370 TATCACTGCTGAAGAGGCC 59 247876420 247876438 CTTCTGCAATACCAGCAGC 59 NA Rattus norvegicus 81 Sox30 ENSRNOG00000006098 ENSRNOT00000007978 1 1 1 80 10 31075253 31076904 CCTCAGATGCAGGAATACC 57 31076946 31076966 CCATAAATGCATTCATGGGTC 58 NA Rattus norvegicus 81 Cyp2c13 ENSRNOG00000049464 ENSRNOT00000071633 2 1 1 80 1 258811743 258820886 ATACCGAAGGGAACAGCAG 60 258811681 258811699 AAACATCTCTGGGTTGGGA 59 NA Rattus norvegicus 81 Fam107a ENSRNOG00000033261 ENSRNOT00000071273 3 1 2 108 15 18399774 18411081 GTAGAGAACCTCCATCGCT 59 18411151 18411171 GATGAGCTCTGAATTCCACTC 59 NA InUTR Rattus norvegicus 81 Olr145 ENSRNOG00000048582 ENSRNOT00000072668 2 1 1 60 1 169269647 169269665 TCATACTTCGTTCCGTGCT 59 169269605 169269624 GTGTTCAGAGTCTTCAGCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100910474 ENSRNOG00000008521 ENSRNOT00000011278 1 1 1 60 12 33182671 33182693 GAAATCCGTCATATCCTAGTCAC 59 33182633 33182653 GCATCTCTACTTCTTCCTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrr1 ENSRNOG00000004216 ENSRNOT00000005595 3 1 1 80 6 91466087 91466106 ACCAAATTTGTGGACGAAGG 59 91466148 91468534 AGGATTGGCCTTACTCAGAC 59 NA Rattus norvegicus 81 LOC100912610 ENSRNOG00000033415 ENSRNOT00000044186 2 1 1 114 5 77999068 77999410 ATGTGGACAAGCTCAATGG 58 77998972 77998990 CCAAGACATCGATGTGCTG 59 NA Rattus norvegicus 81 Napsa ENSRNOG00000019854 ENSRNOT00000026992 2 1 1 80 1 100584490 100584595 TCCAAGTTCATGAACACCC 58 100584639 100584657 CGTGTCAAAGACAACTGTG 57 NA Rattus norvegicus 81 Sipa1l3 ENSRNOG00000020703 ENSRNOT00000042207 3 1 1 80 1 87320489 87320508 GACCACATCTTTCTACAGGC 58 87314586 87320447 ATTGGTCATCACCTTTAGCC 58 NA Rattus norvegicus 81 Cmss1 ENSRNOG00000027888 ENSRNOT00000031464 1 1 1 80 11 45325064 45325600 ACATAAAGGTCCAGGAGCA 58 45325643 45325662 CTTTGATTCTCCCTGGAGTC 58 NA Rattus norvegicus 81 Ppl ENSRNOG00000002930 ENSRNOT00000004026 3 1 1 80 10 10670551 10671146 GAGAAACTGGACAAGCTGAG 59 10671189 10671207 GATGTTGTGTTGCTCCACC 60 NA Rattus norvegicus 81 Prx ENSRNOG00000018369 ENSRNOT00000024771 2 1 1 118 1 84319901 84319919 GTCTCCTTCTGCTTGAAGC 59 84320001 84320598 CTCTGGATGTTCAGCTTGG 58 NA Rattus norvegicus 81 Mir105 ENSRNOG00000059896 ENSRNOT00000085343 1 1 1 60 X 152585584 152585602 AGTCAAGTGCTCAGATGTC 57 152585542 152585560 AGCACATGCTCAAACATCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc46a2 ENSRNOG00000017324 ENSRNOT00000023588 3 1 1 80 5 77170935 77172244 TCTATATTGCCCGAGCTGTC 60 77170874 77170894 CCTTTACAAGCTTGGACATGG 60 NA Rattus norvegicus 81 LOC102549011 ENSRNOG00000050178 ENSRNOT00000072727 1 1 1 67 X 51792409 51792430 AGCTGCCTACAAATTATATCCC 58 51792184 51792202 TTCCACGTTTGTTGGTCCT 60 NA DesignNoJunction Rattus norvegicus 81 AABR07054000.1 ENSRNOG00000050784 ENSRNOT00000072928 1 1 2 80 3 134441437 134441456 GAGTGTGAACTTCCTGAAGG 58 134441497 134441519 AGGAAGGTCAGTATTACATGC 58 NA Rattus norvegicus 81 Spink12l1 ENSRNOG00000045937 ENSRNOT00000075045 2 1 1 82 X 43015833 43015851 CTCAGCAACATGAAGCCAG 59 43014206 43015787 TGGCTCACAGCATCTACAG 60 NA Rattus norvegicus 81 Lrfn1 ENSRNOG00000019869 ENSRNOT00000057073 3 1 2 123 1 85299512 85299530 ACTTACGTCCAGCTCTGTG 60 85292550 85299427 AGAAGGGATCATCCTGTAGAC 59 NA Rattus norvegicus 81 Mmd ENSRNOG00000002436 ENSRNOT00000087765,ENSRNOT00000086969,ENSRNOT00000003308 2 3 3 80 10 77769638 77769657 GAGCATTGTTTCCACATGTG 58 77769700 77771214 ACGGAGATTTAACCATGGG 57 NA Rattus norvegicus 81 Tnfrsf19 ENSRNOG00000014265 ENSRNOT00000077225,ENSRNOT00000065261 1 2 2 80 15 41316182 41316200 GCATTCAAGGTCCTACCTG 58 41315814 41316140 ACTTGCTTTACAGGACAAGTG 59 NA Rattus norvegicus 81 Tnfrsf19 ENSRNOG00000014265 ENSRNOT00000077225,ENSRNOT00000065261 2 2 2 80 15 41315817 41316142 GTCACTTGTCCTGTAAAGCA 58 41315756 41315774 GGACACAGTTTCCAGATCG 58 NA Rattus norvegicus 81 Ms4a8 ENSRNOG00000020939 ENSRNOT00000063879 2 1 1 80 1 227139731 227139752 AGACATCAGTATCTCAGGAGGA 60 227137309 227139691 ATAGCCACACCTGTACTCAC 59 NA Rattus norvegicus 81 Ipo13 ENSRNOG00000019758 ENSRNOT00000026844 3 1 1 80 5 136737550 136737569 ATCCTGAAGAACCTGCACTC 60 136737329 136737511 GGAGGGATTAGGTATCTCTTCTG 59 NA Rattus norvegicus 81 Celf6 ENSRNOG00000052224 ENSRNOT00000082840 2 1 1 80 8 64426139 64426246 AAGAGAAGGTCCTGAAGGC 59 64426289 64426308 AATGTCTGTATGAGTTCCGC 58 NA Rattus norvegicus 81 Hibch ENSRNOG00000028557 ENSRNOT00000040650,ENSRNOT00000029677 2 2 2 80 9 53475060 53475081 CTTTCAGTCCATGGTCAATTCC 60 53465072 53475020 AGGAAACAGTCCTATTCCCG 59 NA Rattus norvegicus 81 RGD1560755 ENSRNOG00000059911 ENSRNOT00000078964 3 1 1 86 16 70906204 70906223 CATCCTCCTCATCCTCTACC 59 70906270 70907481 AGGATAGAATTCATCCCTGGA 58 NA Rattus norvegicus 81 Phf1 ENSRNOG00000000480 ENSRNOT00000059548,ENSRNOT00000091364 1 2 2 80 20 5530004 5530022 TTTCAGACACTCCCAAAGG 57 5530066 5530179 TCCCTGAAATGAAACGGTC 58 NA Rattus norvegicus 81 Tmlhe ENSRNOG00000000729 ENSRNOT00000076901,ENSRNOT00000049573 2 2 2 82 20 248553 248572 TGTGAATTGTACTTGGCACC 59 250938 254199 ATTGCAGTTCTAGCAAGCG 59 NA Rattus norvegicus 81 Plekha5 ENSRNOG00000008747 ENSRNOT00000042291,ENSRNOT00000011770 2 2 2 80 4 174761840 174761859 AGTCCTCAACGATAGCTTCC 59 174761902 174764366 CACTTCTCGGTCTTTCCGT 60 NA Rattus norvegicus 81 LOC100910467 ENSRNOG00000048445 ENSRNOT00000074937 1 1 1 60 2 115125994 115126013 ATTGATCTCTGCCATTCCAC 58 115126036 115126054 TCTCTGCCACAAAGTTCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp958 ENSRNOG00000030410 ENSRNOT00000050885 3 1 1 88 12 5487195 5490652 AGAAGACACGGAAGACCTG 59 5487125 5487143 CTACTGCGATGTGCAAAGG 59 NA Rattus norvegicus 81 Rrp1 ENSRNOG00000001203 ENSRNOT00000001597 1 1 1 80 20 10989916 10989935 TAAGTAGGGCTGACCTTGAG 59 10989978 10990703 CGTAGTCAAACTGGAGGAC 58 NA Rattus norvegicus 81 Olr749 ENSRNOG00000049966 ENSRNOT00000051083 2 1 1 60 3 102472092 102472111 CTGAACCCTGCCATTTACAC 59 102472132 102472152 TTAGTTTCCTCATTGCCACCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vwa5a ENSRNOG00000000195 ENSRNOT00000015986 1 1 1 80 8 42448166 42453302 AAGAAGCGAGATAGTTTGATGG 59 42453342 42453361 CTTTGAGGCGTTCACTTCTG 60 NA Rattus norvegicus 81 RGD1311458 ENSRNOG00000013721 ENSRNOT00000018473 2 1 1 80 11 60925986 60926004 TGAAGCACTTAGGGCTACG 60 60924458 60925944 TATGGAGAACCCATAACCTGC 60 NA Rattus norvegicus 81 Rn60_20_0009.4 ENSRNOG00000053949 ENSRNOT00000092227 1 1 1 60 20 1547604 1547622 CTTTGCTTCATCACCACCA 58 1547562 1547580 ATCCATCTCCAGTCCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Arsj ENSRNOG00000000001 ENSRNOT00000055633 3 1 1 60 2 230661782 230661801 GCTGATCCATATGAGAGGGT 59 230661824 230661842 GCAACTTCTTCACAATGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc47 ENSRNOG00000009006 ENSRNOT00000012533 2 1 1 80 10 94402336 94403686 GATGCAGATACCCAGGAGG 59 94402274 94402295 ATCAGGTTTGTCTTCATAACCC 59 NA Rattus norvegicus 81 Morn2 ENSRNOG00000030319 ENSRNOT00000047356 1 1 1 81 6 2971869 2972590 GAAAGATGACAAGATGAATGGC 58 2972630 2972650 CATGTTGTCCTTAAACTGTCC 57 NA Rattus norvegicus 81 Morn2 ENSRNOG00000030319 ENSRNOT00000047356 2 1 1 81 6 2971869 2972590 GAAAGATGACAAGATGAATGGC 58 2972629 2972650 CATGTTGTCCTTAAACTGTCCT 59 NA Rattus norvegicus 81 Lyrm7 ENSRNOG00000045961 ENSRNOT00000075311 1 1 1 62 10 40195362 40198426 GCAGCCAGAGTAAAGATAAACG 60 40195321 40195340 TTTCTCTGGAGATGTCTCGT 58 NA DesignNoJunction Rattus norvegicus 81 Kcnk6 ENSRNOG00000049868 ENSRNOT00000032394 3 1 1 83 1 88169594 88169835 GCTTGTCACAGCATACCTC 59 88169529 88169547 CCATGGAGGTCAGAAACAC 58 NA Rattus norvegicus 81 Cstf3 ENSRNOG00000012089 ENSRNOT00000016318 2 1 1 80 3 94603144 94605767 TGGGCTACAAGGATGTCTC 59 94605810 94605829 GAACAGGCACTATGGAAGGA 60 NA Rattus norvegicus 81 Igsf6 ENSRNOG00000017277 ENSRNOT00000023262 3 1 1 80 1 191003875 191007423 TTCTTCAAGTTGGTGTGGTG 59 191003814 191003832 TCTGAGACGTGTAGTCCAC 59 NA Rattus norvegicus 81 Olr767 ENSRNOG00000045977 ENSRNOT00000047051 2 1 1 60 3 102773651 102773672 GTCATCCTGATCTTAGTAACCA 57 102773612 102773632 CCAACAAGAAGTACATGGGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prss22 ENSRNOG00000039698 ENSRNOT00000060888 2 1 1 92 10 13373190 13373355 GCTTTAGCAGCAATATGGAC 57 13373117 13373136 CTACTTTCTGAGACCTTGGG 57 NA Rattus norvegicus 81 Gchfr ENSRNOG00000012290 ENSRNOT00000016458 2 1 1 93 3 110975989 110977401 GATCCGTATGGAAGTGGGT 59 110977458 110977476 CAGGACTCGTCTCTTGGAG 59 NA Rattus norvegicus 81 Ermn ENSRNOG00000021472 ENSRNOT00000082604,ENSRNOT00000034449 2 2 2 83 3 44081639 44084950 TTTCCAAGAAGGGCATCCA 59 44081574 44081595 TGGACAATTCTTTCCTTCTGTC 59 NA Rattus norvegicus 81 Tmed1 ENSRNOG00000008037 ENSRNOT00000061009 2 1 1 82 8 22541850 22541868 GGAGGAGGTAGAAGGTTGG 59 22541274 22541808 CTATGGATTCCTTGATGTCTTCC 59 NA Rattus norvegicus 81 Espl1 ENSRNOG00000012835 ENSRNOT00000017314 1 1 1 80 7 143913651 143915291 AGTCTTCCACAGAGTTTGGT 59 143915334 143915352 CCTTATGCGTCCCTTTCTG 58 NA Rattus norvegicus 81 Inpp5a ENSRNOG00000017635 ENSRNOT00000054890 1 1 1 80 1 211826252 211826270 CACTGCCAAGAATTCGGAG 59 211826312 211830428 ACTGGACAGTAGTTCCTTGAC 60 NA Rattus norvegicus 81 Nfkbid ENSRNOG00000025111 ENSRNOT00000029719 3 1 1 82 1 88888019 88888127 AGACTTCGAAGGCCTTACC 59 88888172 88888191 TCCTCGGACACATAGTAGGT 60 NA Rattus norvegicus 81 Cntnap5c ENSRNOG00000043185 ENSRNOT00000067198 3 1 1 80 13 7464031 7531102 AAGTCACAGAGACTCTTGGG 59 7531145 7531163 GGACTGAAGAAAGGCATCC 58 NA Rattus norvegicus 81 Olr1199 ENSRNOG00000011563 ENSRNOT00000015369 3 1 1 60 8 40285723 40285746 CTTTCTAGGTTTCTACATGGTGAC 59 40285762 40285783 TCCTATTAAGGAGATCAAGCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rasgrp2 ENSRNOG00000021098 ENSRNOT00000028646 3 1 1 80 1 221786641 221786660 CTTCGTACACAACTTCCAGG 59 221786703 221786922 TAGATGCCCAGGATCAGAG 58 NA Rattus norvegicus 81 Agbl5 ENSRNOG00000008612 ENSRNOT00000011635 2 1 1 80 6 26854289 26854309 CTACGAGTTCAACGTATGGAC 59 26854020 26854249 CTGAAGTAGAACCATGACCTG 58 NA Rattus norvegicus 81 Cpm ENSRNOG00000034134 ENSRNOT00000044413 3 1 1 80 7 60703148 60707083 GCACCTAGGTGTAAAGGGT 59 60707127 60707145 TTTCTGTCTTGGGCTTCCA 59 NA Rattus norvegicus 81 Umodl1 ENSRNOG00000001157 ENSRNOT00000050744 3 1 1 80 20 9693621 9693640 AACAACTCCATCGTCTACCT 59 9693680 9696788 ATTGCAGTTTATTCTGCAGGAG 59 NA Rattus norvegicus 81 AABR07054522.2 ENSRNOG00000058577 ENSRNOT00000073941 3 1 1 90 3 158964363 158964383 ATTCCTCAGTGATTACACCCA 59 158964551 158964569 AAGTAGAGCTGGGTCATGC 60 NA DesignNoJunction Rattus norvegicus 81 LOC100912399 ENSRNOG00000013177 ENSRNOT00000017968 1 1 1 80 2 43338532 43338910 ATACTTAAAGCTGGATCCATCG 58 43338473 43338493 GTTTGATTCAGCTTGGTTTCC 58 NA Rattus norvegicus 81 Doxl1 ENSRNOG00000023612 ENSRNOT00000032300 1 1 1 84 4 78566724 78566956 AAGATAAGGATTTGGTGGCC 58 78567003 78567021 TTAGGTGTGGTCATGTTGG 57 NA Rattus norvegicus 81 Olr1388 ENSRNOG00000046425 ENSRNOT00000041536 1 1 1 60 10 34564410 34564428 CATGATGCACCCTGTTCTC 59 34564452 34564470 CAAGAAGCCTCCTACCCAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Upk1b ENSRNOG00000027380 ENSRNOT00000004315 3 1 1 80 11 64537333 64537351 TCTGCCTCTTCTGCTTGTC 60 64537394 64539729 TGATGAAGTACGCCAAGAGG 60 NA Rattus norvegicus 81 Rn60_20_0009.3 ENSRNOG00000054154 ENSRNOT00000090533 3 1 1 60 20 1515615 1515633 CCACCTACCTGAAACCTCC 59 1515573 1515592 ATAACAGCAGCTACCACCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1407 ENSRNOG00000047056 ENSRNOT00000047984 1 1 1 60 10 36499448 36499469 ATGTTCTTGTGGATGTACTTGG 59 36499490 36499508 TGATCGCCAGGATGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grb2 ENSRNOG00000037360 ENSRNOT00000056528 2 1 1 79 1 98046702 98046720 GATGAGCTGAGCTTCAAGG 58 98046641 98046662 GCCTTATACCAGTTCTGATCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07049320.1 ENSRNOG00000047792 ENSRNOT00000072724 1 1 2 235 5 116963697 116964552 AAGGAAAGAAATGGTGCGG 59 116964751 116964769 CAAGGCAGATTGCTTTGGG 60 NA DesignNoJunction Rattus norvegicus 81 Gab1 ENSRNOG00000017879 ENSRNOT00000083219,ENSRNOT00000024390 3 2 2 80 19 30880743 30883016 TGAACAAGTTACGGAAAGATGC 60 30883056 30883075 AGGAACTGGATCTATCGCTC 59 NA Rattus norvegicus 81 Pigf ENSRNOG00000015325 ENSRNOT00000020600 1 1 1 80 6 10588666 10588686 ACCTTGTCTGTGTTTGTTAGG 59 10577742 10588626 TCCCAAACAGATGTAACTCCA 59 NA Rattus norvegicus 81 AABR07035375.2 ENSRNOG00000048886 ENSRNOT00000074158 2 1 1 104 12 11734974 11734995 CTACAGTTCCATGCTGGAG 58 11735063 11735081 GTTATCCTCCAGGTGTGGG 60 NA DesignNoJunction Rattus norvegicus 81 Evi2b ENSRNOG00000014125 ENSRNOT00000018898 2 1 1 60 10 66857498 66857517 ATCATTCCCAGATCAACGAG 58 66857457 66857477 GACAGAGGCACACTAAATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olfr94-ps1 ENSRNOG00000000767 ENSRNOT00000000994 1 1 1 60 20 1875156 1875174 CCCACGCATAGTTACAACC 59 1875198 1875216 TCACCACCGTGTAGAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rab12 ENSRNOG00000019295 ENSRNOT00000026177 2 1 1 80 9 114685854 114685874 TGAGATCTTTCTGCTCGTG 57 114684115 114684135 AGGATGCTATTGGATAACTCG 58 NA Rattus norvegicus 81 Hectd2 ENSRNOG00000056753 ENSRNOT00000083002,ENSRNOT00000086991 3 2 2 81 1 255237815 255238600 TCACTTGATGAGCTGACCC 59 255238644 255238663 TATCCAAACCAGCTTCACCT 59 NA Rattus norvegicus 81 Tars ENSRNOG00000019023 ENSRNOT00000088202,ENSRNOT00000051910 1 2 2 80 2 61407792 61408034 CACAGGCAGTATATTGGCAC 59 61407731 61407750 CGTAACATAAGCATCCACCG 59 NA Rattus norvegicus 81 Bcam ENSRNOG00000029399 ENSRNOT00000045574 1 1 1 80 1 80676871 80677046 GCGAGGAGATACTACTCCAG 59 80676810 80676829 CTGGTGACTTTCAAGGTCAG 59 NA Rattus norvegicus 81 S100a10 ENSRNOG00000023226 ENSRNOT00000035240 3 1 1 117 2 193898570 193898588 CATGGAAAGGGAGTTCCCT 59 193900909 193900927 TAGAAAGCTCTGGAAGCCC 59 NA DesignNoJunction Rattus norvegicus 81 RT1-M3-1 ENSRNOG00000000763 ENSRNOT00000080622 3 1 2 82 20 1814894 1815075 AGTATGAAAGCACTGAGTGTG 58 1814832 1814850 ATTCCACTGTGGTACTGGT 58 NA DesignNoJunction Rattus norvegicus 81 Kdm4d ENSRNOG00000045905 ENSRNOT00000071532 2 1 1 60 8 13511924 13511942 AGAGATGACAGAAGTCCCA 57 13511882 13511902 CTATTAAGTCTCCAGTCACGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 S100a16 ENSRNOG00000012053 ENSRNOT00000016499 1 1 1 61 2 189927865 189927883 AAGAGCTGAACCACATGCT 60 189928080 189928098 CTGGATGAGCTTGTCAGCT 60 NA DesignNoJunction Rattus norvegicus 81 LOC100911479 ENSRNOG00000046634 ENSRNOT00000072854 2 1 1 60 10 44934140 44934161 TGAAGACACATCCCAATATGAG 58 44934181 44934200 TATCAGCACAAGGACAAGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prm3 ENSRNOG00000002564 ENSRNOT00000003451 1 1 1 60 10 4951783 4951802 GTCAAGACAACTTCTCCCTG 58 4951824 4951843 TCATCTTCCTCATCCTCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rai14 ENSRNOG00000028872 ENSRNOT00000040348 3 1 2 80 2 60563579 60564086 CAGGATGCTGATTTAAAGACC 57 60562468 60562487 AGTTCCACTTCTTTCTGAGC 58 NA Rattus norvegicus 81 Alg2 ENSRNOG00000006369 ENSRNOT00000008913 2 1 1 82 5 63191649 63191667 GCTCTACGTGCTGTTTCTC 59 63190050 63190069 GTTTGAACACAGGGATGCAG 60 NA DesignNoJunction Rattus norvegicus 81 LOC688335 ENSRNOG00000049188 ENSRNOT00000073660 3 1 1 85 8 38685464 38686113 GCTTCCTACAAGCTCTGAC 58 38686159 38686180 AGCTTTACAGGTAGAGTATCCT 58 NA Rattus norvegicus 81 Egr3 ENSRNOG00000017828 ENSRNOT00000024067 1 1 2 81 15 51757119 51758432 CAGATGGCTACAGAGAATGTG 59 51758474 51758493 GGAAAGAGCCCGAATAAGAG 58 NA Rattus norvegicus 81 Fam160b1 ENSRNOG00000017225 ENSRNOT00000023247 2 1 1 80 1 278220464 278221264 GTGATTGTCAGGGTTGTTGG 60 278221305 278221325 TCTGACTAAGAGAAGCTTGGG 59 NA Rattus norvegicus 81 Ypel3 ENSRNOG00000019721 ENSRNOT00000026755 1 1 1 81 1 198211894 198211912 CTGACAGGTCTTCATGCTG 58 198211955 198213349 CAAAGGCTTGCTCATATTTCC 58 NA Rattus norvegicus 81 Olr1350 ENSRNOG00000030424 ENSRNOT00000052361 3 1 1 60 9 99753430 99753448 TCTCCTTGTTGGCTACCAC 59 99753472 99753490 ATGAAACGGTCATAGGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pygl ENSRNOG00000006388 ENSRNOT00000009183 1 1 1 80 6 92607707 92608160 TTTCCAGATCAGGTAGCCA 58 92607645 92607665 GTCCACAAAGATCCTCATCAG 59 NA Rattus norvegicus 81 Fam170a ENSRNOG00000015834 ENSRNOT00000039379 3 1 1 92 18 45026126 45026924 ATCCATCGTAGTAAGGGAACC 59 45026978 45026996 AATAGTGGCCTCTCCTTCC 59 NA Rattus norvegicus 81 Srxn1 ENSRNOG00000031167 ENSRNOT00000041456 2 1 1 80 3 147619922 147620539 TCATCCAGGATGTAAGCTCTG 59 147621127 147621145 TACAGTCCACCAAGGAAGC 59 NA Rattus norvegicus 81 AABR07066994.1 ENSRNOG00000042034 ENSRNOT00000064584 1 1 1 60 9 25203648 25203667 ATGAATCTGACATGCTGCCT 60 25203687 25203708 GCTTCACCATGTTCTTAGTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sorbs3 ENSRNOG00000008829 ENSRNOT00000012056 2 1 1 80 15 51865089 51868770 TTATGTGGAGGTTCTGCCTG 60 51865028 51865046 GCATCTCCATACTCCAGCA 59 NA Rattus norvegicus 81 Catsperd ENSRNOG00000048818 ENSRNOT00000071207 1 1 1 80 9 10422218 10423017 GTGTATCTAGGGCAGAGGG 59 10422156 10422176 CATTGACTTCGGAATGGTGAG 59 NA Rattus norvegicus 81 Lgalsl ENSRNOG00000005464 ENSRNOT00000008274 1 1 1 80 14 105054353 105054518 TCCCACGACTGATAGTTCC 59 105054291 105054310 CGATGCCCATCACTAATACC 58 NA Rattus norvegicus 81 Lama5 ENSRNOG00000053691 ENSRNOT00000081226 3 1 1 80 3 175559777 175560031 AACCTGTCTGGCATTATCC 57 175559715 175559733 GCTGCTATAGGCATTGGAG 58 NA Rattus norvegicus 81 Pcdhgb8 ENSRNOG00000027220 ENSRNOT00000026967 3 1 1 64 18 30911846 30911865 CAGTGAGTGTCACTGAGGAG 60 30911892 30912589 TGCTTGGTGGTTAGAAGCA 60 NA DesignNoJunction Rattus norvegicus 81 LOC100911689 ENSRNOG00000046670 ENSRNOT00000041899 2 1 1 87 1 99324971 99325843 CCACTGCTATAGCAACTATTACC 59 99324906 99324925 GTTGACAAACCGGTACTGAG 59 NA Rattus norvegicus 81 Fads6 ENSRNOG00000021380 ENSRNOT00000029001 3 1 1 82 10 103835423 103836217 AGCTCTTGAGCATTTGAGG 58 103835359 103835377 ACTGAGAGTAAAGGCCCAG 59 NA Rattus norvegicus 81 Mthfd1 ENSRNOG00000005602 ENSRNOT00000008374 3 1 1 80 6 99317671 99317689 AAGGTCTTACTGTCAGCAC 57 99317731 99318986 TGTTGGAGTAATTCCAGTCAC 58 NA Rattus norvegicus 81 Mrgprx1 ENSRNOG00000037156 ENSRNOT00000056081 3 1 1 60 1 104023989 104024008 GACCAGACTGTATGTGACCA 59 104023948 104023966 GGGAAGACAGCAGATCAGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lefty2 ENSRNOG00000003263 ENSRNOT00000004354 3 1 1 74 13 99216156 99216174 GGTCACCATTGAATGGCTG 59 99216212 99216426 GACACGAGCCTAGAATCGA 59 NA DesignRelaxed Rattus norvegicus 81 Zbtb10 ENSRNOG00000061862 ENSRNOT00000087598,ENSRNOT00000081553 2 2 2 88 2 94693892 94694168 AAAGACATTCCCTGGTGCA 60 94693822 94693840 TATTCCAACACTGGCTGCT 59 NA Rattus norvegicus 81 Ssty1 ENSRNOG00000049619 ENSRNOT00000071530 3 1 1 60 3 96552467 96552488 ACCTACGAGAAAGATACAGTCC 59 96552506 96552527 TACCTTCTGTGTAATCATCCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prmt2 ENSRNOG00000001297 ENSRNOT00000050531 1 1 1 80 20 13196884 13200033 GGGACTCTGAAACTTCACCT 59 13200075 13200094 CTTGTTCTGCAGGATGACAC 59 NA Rattus norvegicus 81 Cxcr6 ENSRNOG00000006319 ENSRNOT00000008294 1 1 1 60 8 132870268 132870287 GGCTTATCTGTCAGTTCCAC 58 132870307 132870328 GTCATCTGTAGAACAAGAACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Thsd7b ENSRNOG00000003878 ENSRNOT00000005212 1 1 1 80 13 46885792 46888105 ACTGTGAGGAGCGTAATCTG 60 46888148 46888166 AGAGCTGACAGTTGACCAC 60 NA Rattus norvegicus 81 NMS ENSRNOG00000038979 ENSRNOT00000059587 3 1 1 80 9 45613284 45613931 CTAAGAAGGATCCTACCACCAG 60 45614682 45614703 GGACTTTGTCAGTGTATCTTCC 59 NA Rattus norvegicus 81 Zfx ENSRNOG00000005624 ENSRNOT00000065194 3 1 2 80 X 63166089 63177788 GGACTACCTTATGATCTCTTTGGA 60 63166032 63166053 GTTTCGTTGTCCATAGTCAGTC 60 NA Rattus norvegicus 81 Brinp1 ENSRNOG00000005561 ENSRNOT00000007578 1 1 1 80 5 84989325 84997296 CTACATTGGGAGGAGAGGAG 59 84989264 84989283 TTTGGGTAGCATTTCCTGAC 58 NA Rattus norvegicus 81 Cdip1 ENSRNOG00000003328 ENSRNOT00000004999 3 1 1 232 10 10986706 10986725 TTATCCAGGAGGTCCTACAG 58 10987160 10987778 GAGGAGGGTAGAAACCTGC 60 NA DesignRelaxed Rattus norvegicus 81 Gpx6 ENSRNOG00000060749 ENSRNOT00000082782,ENSRNOT00000079035 2 2 2 80 17 45445205 45445223 TATGCAGGAAAGCACATCC 58 45441705 45445162 CAATGTGTTCAGTTCAGGGT 58 NA Rattus norvegicus 81 AABR07012314.1 ENSRNOG00000043111 ENSRNOT00000045938 1 1 1 84 2 192978178 192978196 TCTGGATGCTGTAGCAGTG 60 192978070 192978088 AGCAATCTCCAGACTGCTG 60 NA DesignNoJunction Rattus norvegicus 81 Slc4a2 ENSRNOG00000014347 ENSRNOT00000019666 1 1 1 80 4 7264912 7265023 AGCGAGAAATGAAATGTCTGG 59 7264852 7264870 TCTCGTTGTACTCGTCCAC 59 NA Rattus norvegicus 81 Mycbp ENSRNOG00000017166 ENSRNOT00000023354 1 1 1 83 5 141565033 141565051 CTTCGCCTAGAATTGGCAG 59 141565096 141566210 CTGAACAAGCTTTGCTTTCAG 59 NA Rattus norvegicus 81 Qrfp ENSRNOG00000046473 ENSRNOT00000073731 1 1 1 68 3 10036558 10036576 ACATCGGAGCCAGAATGAG 60 10036608 10036626 GTGGACTTTGAACTGAGCG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Qrfp ENSRNOG00000046473 ENSRNOT00000073731 2 1 1 69 3 10036558 10036576 ACATCGGAGCCAGAATGAG 60 10036609 10036627 CGTGGACTTTGAACTGAGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100365902 ENSRNOG00000025383 ENSRNOT00000038352,ENSRNOT00000088802 1 2 2 80 X 37336210 37336800 GCAGAATTAACAGGACGAAGAG 60 37336841 37336859 GCCATAGAAGTTCTTGGCG 59 NA Rattus norvegicus 81 Clec11a ENSRNOG00000019138 ENSRNOT00000025949 3 1 1 81 1 100293304 100293322 GGGAAGGAATGGGAAGGAG 60 100293097 100293262 CCTGGAGATTCTTCAACATCAG 59 NA Rattus norvegicus 81 Serpina3c ENSRNOG00000010410 ENSRNOT00000013896 1 1 1 80 6 127999068 128000866 TCTCCTCTTTAAAGGCAAATGG 59 127999009 127999031 CTCTTCTCATCCAAGTAGAACTC 58 NA Rattus norvegicus 81 LOC685964 ENSRNOG00000025934 ENSRNOT00000030426 2 1 1 80 4 122219065 122219364 CAAGAAGTTTCCTTACAGGTTACC 60 122219403 122219421 GATTTGCTCTTGGCCTTCC 59 NA Rattus norvegicus 81 Itpripl2 ENSRNOG00000036762 ENSRNOT00000055106 2 1 1 60 1 188141400 188141419 GAGAAGTTGGTGAAGTTCCT 58 188141359 188141377 CACAATGGAAGAGGTCTCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp46a1 ENSRNOG00000007147 ENSRNOT00000081088,ENSRNOT00000009896 1 2 2 80 6 132255171 132258401 CTGAGTCAGTCAAGAAGTTCC 58 132258443 132258461 CGAACACAGTCTGAATCGC 59 NA Rattus norvegicus 81 Rn60_X_0588.2 ENSRNOG00000051220 ENSRNOT00000076131 1 1 1 124 X 57992124 57992142 TTCCATTACAAGGTGCGGT 60 57992008 57992027 CCTCTGTCCTCATCTAGACC 58 NA DesignNoJunction Rattus norvegicus 81 LOC100363537 ENSRNOG00000047067 ENSRNOT00000071701 3 1 1 81 4 6029699 6029721 ATCAAGTTCCACATCAAGTTCC 59 6029763 6029781 CGTCATCGGTCATCTTCAC 58 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000075810 1 1 10 64 18 29995653 29995671 CTCAAGACCGACCTCATGG 60 29995698 30185397 GGGTTGTCTGTAGAACTTGG 58 NA DesignNoJunction Rattus norvegicus 81 Ccdc84 ENSRNOG00000012137 ENSRNOT00000016227 2 1 1 80 8 48735613 48735632 ATTCTGGTGGGAGAACAAGG 60 48732610 48735573 TTCTTAAACCGTGCATAATCCG 60 NA Rattus norvegicus 81 Pigl ENSRNOG00000003070 ENSRNOT00000004113 2 1 1 80 10 48788188 48821859 TTGACAAGAGGGAGTTTCCA 59 48821902 48821920 GTATGTGCTGGAGGATGGT 59 NA Rattus norvegicus 81 Lonp1 ENSRNOG00000046502 ENSRNOT00000074253 1 1 1 80 9 10439098 10439118 CTGGGAAGATTATCCAGTGTC 58 10439160 10439268 GGCCAATCTTATCCACCTC 58 NA Rattus norvegicus 81 Zc3hav1 ENSRNOG00000013948 ENSRNOT00000018782 3 1 1 80 4 66035743 66036024 CGATGAGTATCTCCTACGC 57 66035681 66035699 TGGTCCTGACAGATTTCCT 58 NA Rattus norvegicus 81 RGD1565410 ENSRNOG00000037375 ENSRNOT00000082405 3 1 1 80 7 116503613 116503631 TACCTGCTCAACAGCTACC 59 116501810 116503571 TTCACAGAGTCCTTTACAGCT 59 NA Rattus norvegicus 81 LOC680959 ENSRNOG00000030346 ENSRNOT00000045382 1 1 1 60 X 60392038 60392056 TGTCAAGGAGCTGGAAGTG 60 60392080 60392098 GTGAGCAATCTCAGCACAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plod1 ENSRNOG00000007763 ENSRNOT00000010433 2 1 1 80 5 164732800 164735374 ATTCACAACCAAGAACAGCA 58 164732739 164732758 CTTCACAGACTGGTACTCAC 58 NA Rattus norvegicus 81 Mmaa ENSRNOG00000011618 ENSRNOT00000015508 1 1 1 80 19 32308647 32308665 GAGAGTCTTAGCCCACCAG 59 32308708 32312336 GGTCCAGACAATCCTACTCG 60 NA Rattus norvegicus 81 Slc5a6 ENSRNOG00000057628 ENSRNOT00000081167,ENSRNOT00000082623 3 2 2 81 6 26696067 26696227 ACAACCAGGATATCCCTGTG 59 26696270 26696289 TCTTTGTCTCTGCTGTCCTG 60 NA Rattus norvegicus 81 Senp8 ENSRNOG00000011595 ENSRNOT00000015415 2 1 1 86 8 64561040 64572810 AGGAATAGAAGTACTGCTGAGTG 60 64559870 64559889 TAACTCAAGACCACAGGGTC 59 NA InUTR Rattus norvegicus 81 Prss2 ENSRNOG00000032916 ENSRNOT00000018852 2 1 1 81 4 70692339 70693567 CACTGCTATAAGTCCCGCA 60 70693610 70693630 CATTGACAAACTGCTCATTGC 59 NA Rattus norvegicus 81 RGD1562055 ENSRNOG00000030214 ENSRNOT00000041674 3 1 1 60 10 2075141 2075162 TCAGAAATTTGCCATGAAGGAG 59 2075183 2075201 ATTGAGCCTGGTGTCTACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps6kb2 ENSRNOG00000021689 ENSRNOT00000029580,ENSRNOT00000083204 1 2 2 80 1 219410366 219411830 GAAAGTCTTGAGAAAGGCCA 58 219410305 219410326 GATTCTAGAATGTTCCGCTCAG 59 NA Rattus norvegicus 81 Prr9 ENSRNOG00000012312 ENSRNOT00000016430 1 1 1 135 2 192026626 192027190 GACTCTTCAAATCATCTGAGATGTC 60 192026515 192026533 TCCTGACATGATGGGACAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Olr1380 ENSRNOG00000049114 ENSRNOT00000041708 2 1 1 60 10 12776640 12776661 TGAGCTGTTGATTCTTACAGAG 58 12776601 12776619 CAGGATGCAGACAAATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1380 ENSRNOG00000049114 ENSRNOT00000041708 3 1 1 60 10 12776639 12776660 GAGCTGTTGATTCTTACAGAGG 59 12776600 12776618 TCAGGATGCAGACAAATGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1565033 ENSRNOG00000043295 ENSRNOT00000065589 1 1 2 80 10 95243361 95243379 TCCGCGTGCATATACTAGC 60 95243422 95244268 CAATATACCTGCTTCCGGGT 60 NA Rattus norvegicus 81 Olr508 ENSRNOG00000053924 ENSRNOT00000080756 2 1 1 60 3 73839136 73839154 CCATCTGTAAGCCTCTCCT 58 73839094 73839112 ACTAGGACCCAACATACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbm27 ENSRNOG00000027250 ENSRNOT00000036613 1 1 1 80 18 36646812 36646832 GAAGTTACAGCAAGACATGAG 57 36646872 36647011 TTAGAGATCAGCATCTTCTGG 57 NA Rattus norvegicus 81 Vom1r37 ENSRNOG00000038647 ENSRNOT00000058999 2 1 1 60 1 72210368 72210388 GCATTTACCAGTTTGTCACTC 58 72210410 72210428 ATTTCTCTGAGCATGACCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aamdc ENSRNOG00000012584 ENSRNOT00000016783 2 1 1 80 1 162527411 162533683 AACAGGAACTGAGCATTCTC 58 162527350 162527369 ATCACAAGAGTCTGTACACC 57 NA Rattus norvegicus 81 LOC100911373 ENSRNOG00000015798 ENSRNOT00000084658,ENSRNOT00000021299 2 2 2 80 9 64520280 64520301 CAGTAGAGATTGCACAAGATGG 59 64513779 64520241 CAGAATAAGGCTCTGGAACTG 59 NA Rattus norvegicus 81 Frmd4b ENSRNOG00000007764 ENSRNOT00000010717 1 1 1 80 4 129677382 129677403 CATAAACGAATACCGAATCCGA 59 129674548 129677344 GATGGAATGATGTCTTCTGGAG 59 NA Rattus norvegicus 81 Erlec1 ENSRNOG00000007283 ENSRNOT00000050321 1 1 1 80 14 115337197 115338647 GAGAAGTCAAATGAGATTCCCA 58 115337138 115337157 TGTACCATTTCCCATTCCCA 59 NA Rattus norvegicus 81 Rpl39 ENSRNOG00000034237 ENSRNOT00000043244 3 1 1 60 14 33031218 33031237 CAGAATCAAGCGATTCCTGG 59 33031177 33031197 AATCCATTGAGGAATAGGACG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Samd14 ENSRNOG00000004155 ENSRNOT00000005519 2 1 1 84 10 82823929 82823947 AAAGCTTCGAGAACCTGTG 58 82825752 82829052 TTTGTGTAAGCTAGTATCCAGC 58 NA Rattus norvegicus 81 Ndufb4l1 ENSRNOG00000034289 ENSRNOT00000044617 2 1 1 60 14 7949523 7949543 TTTAGGGCCTCTCATCTTCTG 59 7949563 7949583 TCTTTCCTTTCTGTCCCTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tram1l1 ENSRNOG00000009835 ENSRNOT00000013030 3 1 1 60 2 228545100 228545120 AGTCAGGAAACAAGATATCCC 57 228545142 228545160 AATGTGGAAGAGGTGGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhl15 ENSRNOG00000006515 ENSRNOT00000008558 1 1 1 82 X 63358960 63358978 TCTGATGACTCCATCCAGC 59 63388850 63388868 CAACTTCATACCGCAGCTG 59 NA DesignNoJunction Rattus norvegicus 81 Otop3 ENSRNOG00000053055 ENSRNOT00000083302 1 1 1 90 10 103892980 103896262 GTTCTCAGGTAACGGGACC 60 103896315 103896334 GAAAGGGTAGAGCATCAGGA 59 NA Rattus norvegicus 81 Art1 ENSRNOG00000020251 ENSRNOT00000027427 2 1 1 94 1 167202163 167202497 GAGTTCAGGTTCAAAGTTACTC 57 167202551 167202570 ATACTGGTCATCAAAGGACG 57 NA Rattus norvegicus 81 Osgin2 ENSRNOG00000009358 ENSRNOT00000012394 3 1 1 80 5 29664904 29667725 CAAGCGAAGGAACTTAAAGGG 60 29664844 29664864 CCCATGACCTTTACATAGTGC 59 NA Rattus norvegicus 81 Atad2b ENSRNOG00000058973 ENSRNOT00000084560 3 1 3 80 6 29139415 29139433 AGCTGAACTGGATCCAGAG 59 29139477 29142126 GCTGTCACTGATAAGCCTC 58 NA Rattus norvegicus 81 Atad2b ENSRNOG00000058973 ENSRNOT00000092223 2 1 3 88 6 29065172 29069742 AATGTGTTGGCTACTGTGG 58 29069794 29069812 ATAGATCTGAGGGTAGCGC 59 NA Rattus norvegicus 81 Ruvbl1 ENSRNOG00000013195 ENSRNOT00000090875,ENSRNOT00000018339 1 2 2 80 4 120433847 120433871 GAAGAAGGAAATCATACAGGATGTG 60 120433908 120435491 AGAATATCTTGCCCACCCTG 60 NA Rattus norvegicus 81 Olr410 ENSRNOG00000048499 ENSRNOT00000073976 1 1 1 60 3 16318979 16318999 TGCTCAAACTTTCCATCTCAG 59 16319020 16319039 ACTGCTAATGTGAGGATGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gnb3 ENSRNOG00000015541 ENSRNOT00000090898,ENSRNOT00000021481 1 2 2 81 4 157355825 157355957 ACACCACCAATAAGGTGCA 60 157355762 157355780 ACGAAGTTCCCTGATGGTG 60 NA Rattus norvegicus 81 Rgs17 ENSRNOG00000018690 ENSRNOT00000025355,ENSRNOT00000083225 1 2 2 85 1 42494549 42508968 TGTCACCGAAAGAGGTCAG 59 42494482 42494500 TTCGTACATGTGAGGGCTG 60 NA Rattus norvegicus 81 Slpil2 ENSRNOG00000029508 ENSRNOT00000043470 1 1 1 80 3 160738153 160738171 CAGGAAAGCAGAGATGCTG 59 160737610 160738109 TCTTCTTCACTGGTCTGGG 59 NA Rattus norvegicus 81 Fgf17 ENSRNOG00000012912 ENSRNOT00000017723 3 1 1 151 15 52331882 52332076 CCTAACCTTACCCTGTGCT 59 52328868 52328886 TAGAGCTGGTACTCACGGA 59 NA Rattus norvegicus 81 Fkbp3 ENSRNOG00000004629 ENSRNOT00000006531 3 1 1 81 6 86818447 86821995 GTTCAGATTCGTTTCTTGCAG 58 86818386 86818407 ACCAAATGGTCCTTATTAGCAG 59 NA Rattus norvegicus 81 Arhgef9 ENSRNOG00000007733 ENSRNOT00000076190 1 1 5 60 X 64249051 64249069 ATCTTTAGGCCAGACCCTC 59 64249009 64249027 TGGGAGTCTTGAGTGTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp6v1a ENSRNOG00000001992 ENSRNOT00000002727 3 1 1 80 11 61569795 61570807 TATTGTTCAGGTGTTCTGGG 58 61570849 61570868 TAGCTAATGAGCCAGTTGAC 57 NA Rattus norvegicus 81 LOC691519 ENSRNOG00000036743 ENSRNOT00000030732 2 1 1 102 1 190466242 190478002 CAAATAAGGATGGCTTCACAC 58 190478065 190478084 TCAGCTGCATGTATACTAGC 57 NA Rattus norvegicus 81 Sfrp4 ENSRNOG00000054957 ENSRNOT00000079216,ENSRNOT00000079368 3 2 2 81 17 47392329 47393553 TGACCTTCCGGAAGATGTG 59 47392266 47392287 TTTACAGTCAGCATCAAAGGAC 59 NA Rattus norvegicus 81 Arntl2 ENSRNOG00000001830 ENSRNOT00000077619,ENSRNOT00000084207,ENSRNOT00000055473 2 3 3 82 4 181103813 181105838 CTGCTCCAGTCAGAATTCAG 58 181105880 181105901 GTTCTTGTTGAAAGAACAGAGG 58 NA Rattus norvegicus 81 AABR07015505.1 ENSRNOG00000055911 ENSRNOT00000064713 2 1 1 60 14 59980264 59980283 CGAAACAAATCCACGGAGTC 60 59980223 59980241 TGGAGCAGTACTCCTTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pot1b ENSRNOG00000047439 ENSRNOT00000072684 1 1 1 80 9 7876217 7876241 CTGTAGATTTGGAAGCTATTCAGAC 60 7871083 7876183 CAGGGCTAGTACTTATTGAACAG 59 NA Rattus norvegicus 81 Pot1b ENSRNOG00000047439 ENSRNOT00000072684 3 1 1 80 9 7889627 7889645 GTAGAAACTGCGAAACCCT 58 7886272 7889584 TATATGCCTGGATCTTCAGC 57 NA Rattus norvegicus 81 Cgn ENSRNOG00000020952 ENSRNOT00000028440 3 1 1 80 2 195925316 195927000 TGAAGAGGTGAAGAAGCGG 60 195925254 195925273 CACTCTTCAGCCTTCTCCTC 60 NA Rattus norvegicus 81 AABR07069845.1 ENSRNOG00000054847 ENSRNOT00000072823 1 1 1 60 8 41350973 41350993 TCCTGCAGTAACACCTATGTC 60 41351015 41351033 TGATACCTGTACCCACCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc26a4 ENSRNOG00000058692 ENSRNOT00000087300 3 1 1 80 6 50830270 50830289 CTATTGCAGTGTCTGTAGGG 58 50829016 50830227 CGAAGGCAATGAATTCCTG 57 NA Rattus norvegicus 81 Olr1119 ENSRNOG00000034283 ENSRNOT00000045458 2 1 1 60 8 18115290 18115308 TCTCTGACTCACACCTCCA 60 18115248 18115268 TCAGCAAAGGACAGATTAGCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zdhhc21 ENSRNOG00000010484 ENSRNOT00000077429,ENSRNOT00000013950 1 2 2 86 5 100957783 100960624 CTGTCCCTGGATAAACAACTG 59 100957717 100957735 TAGCAGGTAAGCAGCTCAG 59 NA Rattus norvegicus 81 Gpr22 ENSRNOG00000008423 ENSRNOT00000011659 1 1 2 81 6 51018049 51019007 AAATCTTTAGCAGAGGGCC 58 51017986 51018004 CAGGGAGCCTCTTAATCAG 57 NA InUTR Rattus norvegicus 81 LOC679766 ENSRNOG00000033640 ENSRNOT00000049313 1 1 1 60 14 74095098 74095118 CAGTTGTGAACCCAGAAACTC 60 74095058 74095077 GAGTCCTCTTCATCTTCCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rmdn3 ENSRNOG00000011690 ENSRNOT00000016356 1 1 1 80 3 110953222 110960887 GTGAAGGAGGTTATACGACAG 58 110953162 110953181 CATCTTCAGCATCCTCACTC 58 NA Rattus norvegicus 81 Nde1 ENSRNOG00000058007 ENSRNOT00000086392 3 1 1 80 10 895952 895970 AAGCTGAAACCAGAAACCG 59 893865 895911 CAAACTTCTCCTTCACAGACTC 59 NA Rattus norvegicus 81 LOC498154 ENSRNOG00000001289 ENSRNOT00000001734 2 1 1 92 12 17378677 17379500 CGATGAGGACAAGGTTCCT 59 17379556 17379574 TTCTGCACTGTCAGCTCTC 60 NA Rattus norvegicus 81 Gda ENSRNOG00000018282 ENSRNOT00000024775 1 1 1 80 1 238994647 238995711 CCAACTCTAATCTGTCGCTG 59 238994586 238994604 TCCCAAGCCCTATCTTCAC 59 NA Rattus norvegicus 81 Tmem95 ENSRNOG00000043507 ENSRNOT00000065524 2 1 1 80 10 56487741 56487759 TGTACAACTGCTCCACCTG 60 56487593 56487697 ACAGATCGTGACTTCCTGG 59 NA Rattus norvegicus 81 Troap ENSRNOG00000060703 ENSRNOT00000089448 2 1 1 80 7 140762091 140762109 AGAAGGAGGACCCAAACTG 59 140762151 140764089 GATGAATATGTGGTCCTGGTG 59 NA Rattus norvegicus 81 Nol6 ENSRNOG00000010409 ENSRNOT00000076220 3 1 3 60 5 57448097 57448119 GAATGCTTCTTGAACTCTAGGTG 60 57448059 57448080 AAATAGTCTAACTTCCTGGCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pinx1 ENSRNOG00000012012 ENSRNOT00000016027 3 1 1 81 15 47219222 47219241 TCACCAGGATGACTTCAACC 60 47219283 47222991 CTTGTTGTCTGAGGAATCTGC 59 NA Rattus norvegicus 81 Zxdc ENSRNOG00000025818 ENSRNOT00000038244 3 1 1 86 4 122294032 122294050 GTTCTATCCAGCTCTGCAG 58 122294099 122295726 CCCACTTTCCAAGTAGAGAC 58 NA Rattus norvegicus 81 AABR07038567.1 ENSRNOG00000047748 ENSRNOT00000075300 3 1 1 98 X 55332597 55332616 CTCTGGAGCAGAAGATTCCA 59 55332677 55332696 ATTGAGTCCTGGATTTCCTG 57 NA DesignNoJunction Rattus norvegicus 81 Mir743b ENSRNOG00000041260 ENSRNOT00000063013 1 1 1 60 X 151253360 151253379 AGACTGGTGTCCATCATGTG 60 151253319 151253342 GAGCCTTACTCTATTCAGTATGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rln3 ENSRNOG00000005911 ENSRNOT00000007775 1 1 1 211 19 25166496 25166514 CAGCTGATCATGGCAACTC 59 25164741 25164759 CCATCAGCGAAGAATTCCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Accs ENSRNOG00000009199 ENSRNOT00000044121,ENSRNOT00000012214 2 2 2 80 3 82751601 82751622 ACAGAATGACATGCTTCATGTG 60 82750570 82751560 ACTTCTTTCCGGAGGAACC 59 NA Rattus norvegicus 81 Ttf1 ENSRNOG00000039777 ENSRNOT00000061029 2 1 1 80 3 7641058 7642369 GAAGGAGATACAGAGATTAGAACC 58 7642408 7642426 GATACGCATCTTGTTGCAG 57 NA Rattus norvegicus 81 Nudt9 ENSRNOG00000002186 ENSRNOT00000002973 2 1 1 80 14 7044382 7045495 ATCCTATTATAACCAGGTGGAAGAG 60 7044326 7044344 ACTGCAAGATGCATTTCCC 59 NA Rattus norvegicus 81 Hexim2 ENSRNOG00000021287 ENSRNOT00000004218 2 1 1 95 10 91218683 91221839 AAGACGAAGACTTCTGGTGG 60 91221897 91221915 AATCTCCCTTCCTGGTTGC 60 NA Rattus norvegicus 81 AABR07051793.1 ENSRNOG00000039141 ENSRNOT00000030332 3 1 1 91 3 21556838 21586080 AAACCAATTGTACTGCCGC 60 21586135 21586153 CCCTGTTCTCATTCTGTGC 59 NA Rattus norvegicus 81 Olr334 ENSRNOG00000042023 ENSRNOT00000067320 1 1 1 60 1 229443512 229443531 GTCACCCACACTATGTTCTC 58 229443553 229443572 AGAACCTATGAGTCCTGCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tomm70a ENSRNOG00000001640 ENSRNOT00000002238 1 1 1 80 11 45494360 45496157 GAAGGAGTGTTTAGAAGATGTCAC 60 45494303 45494323 TTATCAGCTAACAGCATGCTC 59 NA Rattus norvegicus 81 Zbtb6 ENSRNOG00000009340 ENSRNOT00000012364 3 1 1 85 3 21683057 21684072 TTTGCGAGTCGATTGTCAC 59 21682990 21683010 TTTCTGTAGGACCACATCTCC 59 NA InUTR Rattus norvegicus 81 Osbpl3 ENSRNOG00000010011 ENSRNOT00000013828 3 1 1 80 4 80085269 80088925 TCTACCACCTGAAGGTAAAGTC 59 80085210 80085228 TCTGCCGGTACATTCTGTG 60 NA Rattus norvegicus 81 Dexi ENSRNOG00000002635 ENSRNOT00000003544 2 1 1 217 10 5199874 5199894 ACGTCTTCGATGGATATTTGG 58 5211365 5211383 CTCACTTCTCCTGGCAGAC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fnbp4 ENSRNOG00000007241 ENSRNOT00000078278,ENSRNOT00000009687 2 2 2 80 3 79593759 79595574 GGACCTCAAATTTCAGATTGGA 59 79595613 79595633 ATGGACTGTCTGTTAATCCCT 59 NA Rattus norvegicus 81 Tsga10ip ENSRNOG00000027564 ENSRNOT00000083656,ENSRNOT00000038198 3 2 2 80 1 220784824 220784844 GCAGACAACAAAGAAAGAACG 59 220784683 220784783 CTGAAGAGATCCTCTGCCTC 59 NA Rattus norvegicus 81 Ahcyl2 ENSRNOG00000039300 ENSRNOT00000025165 2 1 1 80 4 57175655 57176131 TATGGAGAGGTAGGAAAGGG 58 57176171 57176192 GATGGGATCAATTTCAGTTACG 58 NA Rattus norvegicus 81 Cluh ENSRNOG00000002669 ENSRNOT00000003687 2 1 1 80 10 61443156 61443278 TTCTACTTGAATCAGTCCACAG 58 61443316 61443337 CTCTACTAGAGAATGGCTAAGG 57 NA Rattus norvegicus 81 Satl1 ENSRNOG00000022476 ENSRNOT00000037149 3 1 1 80 X 83786195 83786218 CTTGTGCTTTCTACATAAGACCTG 60 83782434 83786162 CATAGGTAGCCAGTTCTTTAATCAG 60 NA Rattus norvegicus 81 Nfya ENSRNOG00000012702 ENSRNOT00000017157,ENSRNOT00000091532 3 2 2 80 9 14569387 14569406 CTTAAGAGGAGACAAGCGAG 58 14569447 14569937 AGACTCATGGAGGTATTTCCT 58 NA Rattus norvegicus 81 Brms1l ENSRNOG00000008249 ENSRNOT00000076346 3 1 3 81 6 76701663 76702743 AACAATTAGGAAGGCAATGGC 60 76702783 76702804 CACAGAATAGGTCCCAATTCAC 59 NA Rattus norvegicus 81 Taar2 ENSRNOG00000025951 ENSRNOT00000035424 1 1 1 60 1 22579002 22581971 GGAAACCTTCGATTGTTCAG 57 22578961 22578981 CAGAGACCTTTCATTCTCTGG 58 NA DesignNoJunction Rattus norvegicus 81 Rasa2 ENSRNOG00000011909 ENSRNOT00000016327 3 1 1 80 8 104464277 104466486 GCTAAGAGATTTCCTAATAACCCTC 59 104464221 104464239 CGCTACAGCAAAGAAACGA 59 NA Rattus norvegicus 81 AABR07015956.1 ENSRNOG00000058316 ENSRNOT00000079338 1 1 1 64 14 87701368 87701388 GGAGAAGAGAATAAAGGAGCA 57 87701072 87701342 TTTCTGGTTGACAGGACTG 57 NA DesignNoJunction Rattus norvegicus 81 Ddx31 ENSRNOG00000013040 ENSRNOT00000064323 1 1 1 80 3 7427776 7428587 CTCCACCCACATCTAATTTCC 59 7430095 7430113 TGGGATACTCTGCTTCTGG 59 NA Rattus norvegicus 81 Cacna1g ENSRNOG00000060528 ENSRNOT00000081307,ENSRNOT00000092024 3 2 2 80 10 82185690 82185873 CCATCTTCCAGGTCATCAC 58 82185628 82185648 TGAAGTTGTAGAAGGAGTGAG 57 NA Rattus norvegicus 81 Pgc ENSRNOG00000014492 ENSRNOT00000019650 2 1 1 80 9 15268180 15268676 CAGATTACCATTGACGACTTCC 59 15268121 15268139 GTCTACAATGCCTTGGCAG 59 NA Rattus norvegicus 81 Crbn ENSRNOG00000006534 ENSRNOT00000008873 2 1 1 80 4 138882048 138882067 GACCAGGACAGTAAAGAAGC 58 138881377 138882006 TCCCAGGTATGTATGTGAGG 58 NA Rattus norvegicus 81 Slc35b3 ENSRNOG00000016174 ENSRNOT00000021669 2 1 1 80 17 26494810 26497730 TAATCTGACAGGTGTGATGC 58 26497771 26497791 TTCATAGCTTTCTCCTGAACG 58 NA Rattus norvegicus 81 Mis18bp1 ENSRNOG00000023093 ENSRNOT00000091202 2 1 1 80 6 86883651 86885636 AGAAACAAAGAATCCAGTTGCC 60 86883592 86883613 ATACTGGATTCCTGTCCATAGC 60 NA Rattus norvegicus 81 Nphs1 ENSRNOG00000020873 ENSRNOT00000045212 1 1 1 80 1 88923739 88924224 ACCTTCATCCAGAGTGGAC 59 88924267 88924286 TGTGATGCAGAGTTTCTCCT 59 NA Rattus norvegicus 81 LOC100909977 ENSRNOG00000042598 ENSRNOT00000066343 1 1 1 80 11 54185998 54187432 CTATCACAGTTCATTAGACTGCG 59 54187468 54187490 AATTCTCCTAGAGCTACTATGGC 59 NA Rattus norvegicus 81 Hfe ENSRNOG00000016967 ENSRNOT00000022881,ENSRNOT00000022809,ENSRNOT00000022810 3 3 3 83 17 43667354 43667373 AAGTGGGATCACCATTTGTG 59 43667419 43668789 ATGGTTCCTCCTGAAACCT 58 NA Rattus norvegicus 81 LOC688963 ENSRNOG00000002721 ENSRNOT00000003674 3 1 1 61 11 65960424 65960444 AGTATCTGCTTCAGTACAACG 58 65960467 65965177 AATCAAGGCAGGATCCTCG 60 NA DesignNoJunction Rattus norvegicus 81 Popdc2 ENSRNOG00000058752 ENSRNOT00000087892 1 1 1 86 11 64940754 64940773 TGGATTATAGGAGCGATGGG 59 64937332 64940706 TTCTAGAAGACAGGATCCGG 58 NA InUTR Rattus norvegicus 81 Tuba3a ENSRNOG00000032967 ENSRNOT00000052352 3 1 1 81 4 179908968 179908988 GGCTATTGCTACCATCAAGAC 59 179909026 179910330 GTAGTTAATACCCACCTTAAAGCC 59 NA Rattus norvegicus 81 Psmd12 ENSRNOG00000003117 ENSRNOT00000004283 3 1 1 80 10 95720792 95721448 ATTCCCAAATACAAGGATCTGC 59 95721488 95721507 CCCATAGTCCTCAACAAGTG 58 NA Rattus norvegicus 81 Zfp36 ENSRNOG00000058388 ENSRNOT00000090129 3 1 1 82 1 85380162 85380851 TCTACGAGAGCCTTATGTCG 59 85380895 85380914 TATGTTCCAAAGTCCTCCGG 60 NA Rattus norvegicus 81 Taldo1 ENSRNOG00000018367 ENSRNOT00000024863 3 1 1 88 1 214385114 214385132 AAATGGCTGTGGAGAAGCT 60 214385183 214385695 GAACATTCGTTCTGTGAGCA 59 NA Rattus norvegicus 81 Cacng1 ENSRNOG00000003245 ENSRNOT00000004349 1 1 1 80 10 95923574 95923592 AATTGCTCCTACTTCAGGC 58 95922367 95923531 GATGCTGTACTCCTTCTGAG 58 NA Rattus norvegicus 81 RGD1563015 ENSRNOG00000006658 ENSRNOT00000008726 2 1 1 80 5 138263446 138263465 ATTAATGCTTTGTCCCTGGC 59 138260978 138263403 AGCACAGTGTGATTTCCTG 58 NA Rattus norvegicus 81 Rn60_5_0814.3 ENSRNOG00000030866 ENSRNOT00000047961 2 1 1 80 5 77551311 77551675 GCTCTATGGCAGAACAAAGG 59 77551250 77551269 CTAGTGATTCCATGCACCAC 59 NA Rattus norvegicus 81 RT1-M1-5 ENSRNOG00000028035 ENSRNOT00000038725 3 1 1 87 20 2356545 2356826 TACAGCATGACTGTTATCACAC 59 2356872 2356892 AATTCTACGAATCCGTGACTG 58 NA Rattus norvegicus 81 Rab3gap1 ENSRNOG00000003953 ENSRNOT00000082439,ENSRNOT00000005289 1 2 2 80 13 44629160 44629178 CCGTCGAAAGGAATCAACC 59 44629219 44629679 TGAGTTATATCAGCAACGTCTC 58 NA Rattus norvegicus 81 Rab3gap1 ENSRNOG00000003953 ENSRNOT00000082439,ENSRNOT00000005289 2 2 2 80 13 44629153 44629171 AAATTTGCCGTCGAAAGGA 58 44629214 44629672 TATCAGCAACGTCTCTTCCT 59 NA Rattus norvegicus 81 Psca ENSRNOG00000061376 ENSRNOT00000081571 1 1 1 81 7 116091460 116091704 TTACATCTCGTGTCCGGAC 59 116091749 116091767 TTCTCCGTGTCATCCTCAC 59 NA Rattus norvegicus 81 Psca ENSRNOG00000061376 ENSRNOT00000081571 3 1 1 83 7 116091460 116091704 TTACATCTCGTGTCCGGAC 59 116091751 116091769 AGTTCTCCGTGTCATCCTC 59 NA Rattus norvegicus 81 Rab11a ENSRNOG00000011302 ENSRNOT00000015598 2 1 1 80 8 70203370 70203391 TTGTCGTTCATTGAGACATCTG 59 70194650 70203335 GCGGTATATCTCTGTTAGAATTGTC 60 NA Rattus norvegicus 81 RT1-M1-4 ENSRNOG00000027873 ENSRNOT00000038626 2 1 1 89 20 2390411 2390435 CCCTGAAAGATATTCGGTTTATGAG 60 2390095 2390366 GTGATATCCTGGACTCACCAG 60 NA Rattus norvegicus 81 AABR07006823.1 ENSRNOG00000045862 ENSRNOT00000075459 2 1 1 85 1 258477115 258477136 GGTCTTGCCTTACAAAGTAGTG 59 258477032 258477069 TAGAGCCATGTTTGCCCTC 60 NA Rattus norvegicus 81 Folr1 ENSRNOG00000019902 ENSRNOT00000079675,ENSRNOT00000026962 3 2 2 83 1 166935456 166939255 AAGTTACACGACCAGTGCA 60 166935391 166935412 GGAAATGTCCTTATGTGCTTCC 60 NA Rattus norvegicus 81 Tbck ENSRNOG00000011454 ENSRNOT00000038827,ENSRNOT00000083937 1 2 2 80 2 237814842 237814861 CAACGAGATTGGCTTCATCC 59 237830458 237831622 TTGTGCAGTGGAAATACATGAG 59 NA Rattus norvegicus 81 LOC100909935 ENSRNOG00000032077 ENSRNOT00000044773 1 1 1 60 1 149913783 149913801 CAATCGGCAAAGTGGTCTC 59 149913741 149913760 GTGAGAGGGTTGACTAAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1304963 ENSRNOG00000008942 ENSRNOT00000011832 3 1 1 86 6 23341385 23341403 CAGACTGGGAATCCCATCC 60 23345240 23345258 AGTTGTTCCAAGGTGGGAG 60 NA DesignNoJunction Rattus norvegicus 81 Utf1 ENSRNOG00000050207 ENSRNOT00000075049 2 1 1 218 1 212281640 212281658 CCCTTCGATGACCAGATCC 60 212281937 212281955 GGAAGAGCTGAATCTGAGC 58 NA DesignNoJunction Rattus norvegicus 81 Sgpp1 ENSRNOG00000005175 ENSRNOT00000006913 2 1 1 81 6 98683480 98683500 CTGATTCTCATTCCCTGTTGG 59 98677740 98683437 CAATGACGTCCAGGATGGA 60 NA Rattus norvegicus 81 Gpr174 ENSRNOG00000032970 ENSRNOT00000046164 1 1 1 69 X 78372311 78372329 AGCTTCTATCAGCACTGGA 58 78395312 78395333 ACATTGAAGAAGAGCATGAGAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ttc1 ENSRNOG00000003980 ENSRNOT00000005304 2 1 1 80 10 29357397 29357416 AAATAGAGCTGCTGCAAGGA 60 29350672 29351449 GGATTTAACTGAATGGCTTTGC 59 NA Rattus norvegicus 81 Ceacam3 ENSRNOG00000027607 ENSRNOT00000023663 1 1 1 80 1 79124137 79127800 GCACCTTCATGTGTACTTCTC 59 79127840 79127860 GTCGGCACTGATTCAATACTG 60 NA Rattus norvegicus 81 Tnfrsf10b ENSRNOG00000038483 ENSRNOT00000077758,ENSRNOT00000066128 3 2 2 82 15 51461131 51461149 GACAGAACTCAGAGTTCGC 58 51461195 51462872 ATCAACTTCAGGGCATCAG 58 NA Rattus norvegicus 81 Nox1 ENSRNOG00000048706 ENSRNOT00000075325 3 1 1 80 X 104921684 104921702 TCTCCAGCCTATTCCATCC 58 104921513 104921641 CTGCATACATCACTGTCACG 59 NA Rattus norvegicus 81 Rn60_14_0474.1 ENSRNOG00000033251 ENSRNOT00000050454,ENSRNOT00000076657 2 2 3 60 14 47202533 47202552 GGTTCAGACTTTGTTTCAGG 57 47202492 47202510 GGCCTGGTAAGTGTTAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07027869.1 ENSRNOG00000050687 ENSRNOT00000072833 2 1 1 80 17 47653537 47653556 AAAGATATGGGCCTAGGTGG 59 47651606 47653496 AAGCTACAGTCATCCTTGTCC 60 NA Rattus norvegicus 81 Pnmal2 ENSRNOG00000016863 ENSRNOT00000022610 1 1 1 60 1 78877451 78877470 GGAGGTAGAAACAGAAGTGG 58 78877492 78877511 TTCATCATCGTCATCATCGT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Idi1 ENSRNOG00000016690 ENSRNOT00000022389 3 1 1 93 17 57982888 57983671 AATCGCTGTGTTCTAGGTC 57 57982813 57982831 CTGCTAGAAGCTGAACCTG 58 NA Rattus norvegicus 81 RGD1562747 ENSRNOG00000037352 ENSRNOT00000077290,ENSRNOT00000056518 1 2 2 82 8 69486724 69487440 GGTAATAGCTGGACTTGTTGAC 59 69487481 69487501 TTTCCAGTTCCACAACATCAG 59 NA Rattus norvegicus 81 Fam136a ENSRNOG00000016273 ENSRNOT00000022014 2 1 1 60 4 118160264 118161078 GAATATCCGGAAGATGCAGG 58 118161100 118161119 GTTGTCTTCACAGCAGTTGG 60 NA DesignNoJunction Rattus norvegicus 81 Gm2a ENSRNOG00000052219 ENSRNOT00000078910 2 1 1 80 10 40443927 40449013 CTCAGAAGGTGGAGCTCAC 60 40449056 40449075 AGCTTCCTAGCTGTTCTACG 59 NA Rattus norvegicus 81 Armcx2 ENSRNOG00000025705 ENSRNOT00000029511 1 1 1 80 X 105620946 105621479 AAAGGAATTCGGGTTCTTAGG 58 105620886 105620905 CTAATTCAGCCAGAGCTTCG 59 NA InUTR Rattus norvegicus 81 Ppfia3 ENSRNOG00000020731 ENSRNOT00000028142 1 1 1 80 1 101331175 101331193 AAACGGCTCAACTATGACC 58 101330686 101331131 CCACACCATCACATCTCTG 58 NA Rattus norvegicus 81 LOC689618 ENSRNOG00000028533 ENSRNOT00000029558 1 1 1 87 3 171597425 171601010 GGACGAGATCTGGAAATACC 58 171601057 171601078 CATGGAGGTTGTTAAATATCCC 57 NA Rattus norvegicus 81 Olr384 ENSRNOG00000032117 ENSRNOT00000041509 2 1 1 60 1 230812666 230812690 CTATAGCCTAAGAAACAAGGATGTG 60 230812707 230812726 CGGGCATTTACCAATAACCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Acrbp ENSRNOG00000017399 ENSRNOT00000024618 3 1 1 80 4 157564670 157564883 GATTGGTACCAGATGGTGC 58 157564927 157564945 GATACTGAGCAAACTGGCA 58 NA Rattus norvegicus 81 Lct ENSRNOG00000003681 ENSRNOT00000004908 1 1 1 80 13 45019844 45019862 TGAGCTATGCAGGCTATGG 59 45017310 45019800 GGTGAGCCACCTTAAAGGA 59 NA Rattus norvegicus 81 LOC100363452 ENSRNOG00000021395 ENSRNOT00000037551 2 1 1 60 3 103192935 103192956 CTACAATGCATCCAATAACGAG 58 103192977 103192995 CACAATGCAGTTCTTCACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1115 ENSRNOG00000050583 ENSRNOT00000041855 1 1 1 60 8 17775995 17776013 GTGATGGCCTATGATTGCT 58 17775953 17775974 TCATGATGATTGTGTACCTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnfsf11 ENSRNOG00000049547 ENSRNOT00000049056 2 1 1 81 15 60504156 60504175 ACAGAAGCACTACCTGACTC 59 60488542 60504115 CCACAATGTGTTGTAATTCCCT 59 NA Rattus norvegicus 81 Lmln ENSRNOG00000001781 ENSRNOT00000002427 2 1 1 80 11 70918888 70918908 ATTCAGCTGGCATTTAAGTGG 59 70916573 70918848 TTCTTAAACAGCTCTGGTTGG 59 NA Rattus norvegicus 81 Tecpr1 ENSRNOG00000001010 ENSRNOT00000001347 3 1 1 80 12 12384189 12384207 TTATATGGGCCACCCTCTG 59 12384251 12384356 ACCAGGAATTTCCTTTGGG 58 NA Rattus norvegicus 81 Gabpb2 ENSRNOG00000021105 ENSRNOT00000028661 3 1 1 81 2 196361387 196361405 CAAACCGCAATCCCTACTG 59 196359993 196361342 CAGGCACAGTTAGAACTGG 58 NA Rattus norvegicus 81 Rn60_X_0641.5 ENSRNOG00000051055 ENSRNOT00000076163 2 1 1 60 X 63431399 63431417 CCAGGTTCCAGGTTCAGAG 60 63431436 63431459 CTGTCTCCTAAGCTTCTATAACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0641.2 ENSRNOG00000051315 ENSRNOT00000075921 1 1 1 60 X 63434330 63434348 GGCGTCATTGTAAACAAGC 58 63434176 63434194 TGCACATTGATCCTCTTGG 58 NA DesignNoJunction Rattus norvegicus 81 Cracr2b ENSRNOG00000019199 ENSRNOT00000025964 1 1 1 86 1 214445199 214445217 AGATGTGGTTGCTGTCTCC 60 214445266 214445496 CTCAGATTCAGCTCCCTCAG 60 NA Rattus norvegicus 81 AABR07004678.1 ENSRNOG00000052842 ENSRNOT00000089920 3 1 1 60 1 149778530 149778549 GGATTCCACACTACAGACAC 58 149778489 149778507 GATCTCCAGGAATGACAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000087301,ENSRNOT00000077691 2 2 8 113 13 68703050 68707607 GATGACCCAGATTATGATGCA 58 68707682 68707700 AGGCTTTAATGGTGGTTCC 58 NA Rattus norvegicus 81 RGD1564887 ENSRNOG00000025523 ENSRNOT00000054703 1 1 1 80 1 265729086 265733160 GCATGAAGAACTTGATGGAGAG 60 265729027 265729050 GTTTCAGACATAGACTCTTCAGAC 59 NA Rattus norvegicus 81 Scgb3a2 ENSRNOG00000026912 ENSRNOT00000037796 2 1 1 81 18 38292911 38295128 TGTGGTTATTCTGCCACTG 58 38295172 38295191 GGTTGTCCAAAGGTAAAGGT 58 NA Rattus norvegicus 81 AABR07039303.1 ENSRNOG00000053857 ENSRNOT00000082660 2 1 1 80 X 73580182 73580203 TACATCAAGACAGATAGCTCCC 59 73580243 73580263 CTCCTCCCAACCAAATTCCT 60 NA Rattus norvegicus 81 Vip ENSRNOG00000018808 ENSRNOT00000025477 1 1 1 80 1 42173914 42174277 CGAATCAGCAGTAGCATCTC 59 42174320 42174338 GCGGGTGTAGTTATCTGTG 58 NA Rattus norvegicus 81 Olr1052 ENSRNOG00000033400 ENSRNOT00000049493 1 1 1 60 7 16432595 16432615 ACCATCATTACACTCACTCTG 58 16432555 16432575 TGAGGAAGAAATACATGGGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pknox1 ENSRNOG00000001184 ENSRNOT00000001566 1 1 1 80 20 10334406 10338529 GGACAACAAATGCAGGTGG 60 10338573 10338591 ACTCACTCCTTCTGCATCC 59 NA Rattus norvegicus 81 LOC680441 ENSRNOG00000033439 ENSRNOT00000051510 1 1 1 60 4 148361963 148361982 TATCAAGGCCAACAAACACC 59 148361922 148361946 CACATCAATGTCATAGAGTTTCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp551 ENSRNOG00000047230 ENSRNOT00000074063 1 1 1 83 1 66899020 66899038 TACTGCAATGTGATGCTGG 58 66900370 66900390 ACAAGTTACCTCTTTACTCCC 57 NA DesignNoJunction, InUTR Rattus norvegicus 81 Zfp551 ENSRNOG00000047230 ENSRNOT00000074063 2 1 1 84 1 66899020 66899039 TACTGCAATGTGATGCTGGA 60 66900370 66900391 CACAAGTTACCTCTTTACTCCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Rps6ka6 ENSRNOG00000002592 ENSRNOT00000081625,ENSRNOT00000003512 1 2 2 80 X 82676305 82676323 AATTGGCCCTAGCTTTGGA 59 82675719 82676263 CGTCAAGCAAGATGTTCTCTG 60 NA Rattus norvegicus 81 Tpbgl ENSRNOG00000017922 ENSRNOT00000024157 1 1 1 60 1 164589623 164589641 GCCTCTTACGTCTTCTTCG 58 164589581 164589599 GCACCATGAGGAAGATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr796 ENSRNOG00000049431 ENSRNOT00000043710 1 1 1 60 3 103248437 103248456 CCTGGGATTCACAAACTCCT 60 103248474 103248497 GAACATTGAGGATACCAGAAAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scgb1d2 ENSRNOG00000020294 ENSRNOT00000027492 1 1 1 88 1 225593147 225594887 CTATGAAGCTAATGCTAGCCAG 59 225593080 225593100 CCTTCTTCAGTTCTTCCTCAC 58 NA Rattus norvegicus 81 Cst13 ENSRNOG00000005103 ENSRNOT00000006850 1 1 1 80 3 143156179 143156198 AAGAATACAACAAGGCCAGC 59 143156241 143160553 TGTCTGTGATCTGCTCCTG 59 NA Rattus norvegicus 81 Cpeb4 ENSRNOG00000033169 ENSRNOT00000064832,ENSRNOT00000089460 2 2 2 80 10 15990135 15992383 CATTACGAGCTGTGGAGCT 60 15990073 15990092 CTGGGTCAGTATCGATTCCA 59 NA Rattus norvegicus 81 Edf1 ENSRNOG00000016272 ENSRNOT00000022196 3 1 1 90 3 2781306 2783467 TCTAAGCAGGCCATCTTAGC 60 2783839 2783857 TGGAATGCTGCTTGTTCTG 59 NA Rattus norvegicus 81 Olr1144 ENSRNOG00000030753 ENSRNOT00000040848 1 1 1 60 8 19772877 19772896 AGTAATGGCTTATGACCGCT 59 19772836 19772856 CATGATGACCAAGTACCTCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Crym ENSRNOG00000061215 ENSRNOT00000088482 1 1 1 80 1 189954256 189955779 TCTCCTTCAAGGAGGTGAG 58 189954194 189954213 GAACATCTCCTTGCACTGAG 59 NA Rattus norvegicus 81 Vrk2 ENSRNOG00000007864 ENSRNOT00000086299,ENSRNOT00000068190 1 2 2 80 14 110792185 110792204 GAAGCTCTTGAACCAGAACG 59 110790915 110792145 TATTCCAGTACATCGAGCATCC 60 NA Rattus norvegicus 81 Pla2g4e ENSRNOG00000024904 ENSRNOT00000030502 3 1 1 80 3 111957821 111957839 ATGCTTGGAATCTGTCCCA 59 111957385 111957780 GATCATCTTCGATGTCATGCAG 60 NA Rattus norvegicus 81 Trh ENSRNOG00000011824 ENSRNOT00000015944 2 1 1 94 4 124112317 124112335 CTGGAGAATGTTCAGGTCC 58 124111754 124112259 ATCCAGGAGTCTAAGGCAG 58 NA Rattus norvegicus 81 Add1 ENSRNOG00000013039 ENSRNOT00000018073,ENSRNOT00000018340 2 2 2 80 14 81389596 81394496 TCTACAATCACATCACAACCAG 59 81389537 81389557 CTTCACTGTAGAGAAGTCCGA 59 NA Rattus norvegicus 81 AABR07051652.1 ENSRNOG00000055193 ENSRNOT00000074650 2 1 1 60 3 18707004 18707022 AGTCTCCACATTCCCTGTC 59 18707045 18707064 CTTGCTAGACATTCGATGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ms4a6bl ENSRNOG00000050395 ENSRNOT00000074127 3 1 1 81 1 227246037 227248815 AAATCTTTGGTAGATGGCAGC 59 227248855 227248876 TGACAGAGATGATAATGATGCC 58 NA Rattus norvegicus 81 Olr246 ENSRNOG00000050375 ENSRNOT00000050651 2 1 1 60 1 172265315 172265334 GATTCCCATGTTGAACCCTC 59 172265356 172265375 CATAGCCTCCTTTACCTCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc137 ENSRNOG00000048712 ENSRNOT00000072099 3 1 1 82 10 109632129 109633598 GAAGAAAGCGTTCCAGAAGC 60 109633642 109633661 ACTCTTGCTCCAATCTGTCC 60 NA Rattus norvegicus 81 Olr399 ENSRNOG00000049538 ENSRNOT00000075496 1 1 1 60 3 15823987 15824006 TGGGCTATACCTAGTTCCCT 59 15824028 15824047 CACAGACACAATGACATCCT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zdhhc15 ENSRNOG00000002751 ENSRNOT00000003714 1 1 1 80 X 75500260 75500279 TTTGTGTTCTTTGCATGGAC 58 75491861 75500219 ATAGGACAAGTGGAACTTCTG 58 NA Rattus norvegicus 81 LOC685849 ENSRNOG00000012068 ENSRNOT00000016068 2 1 1 82 5 75004562 75004580 TTCGTGCCCAGTATGAAGG 60 75000258 75004518 AGGCATGATCCCTTCTTTAGG 60 NA Rattus norvegicus 81 Cpsf3 ENSRNOG00000052418 ENSRNOT00000091061 2 1 1 80 6 43369569 43370742 TCTGTTGATCAGTCACTTCCA 59 43370782 43370802 GTCCGTCCTTTGAAACTTGTC 60 NA Rattus norvegicus 81 Lcp2 ENSRNOG00000005620 ENSRNOT00000046135 3 1 1 80 10 19028959 19031615 ATGATGAAGATGATGTGCACC 59 19031655 19031675 ATCTCGAAGGAAATGTGTTGG 59 NA Rattus norvegicus 81 Bard1 ENSRNOG00000014960 ENSRNOT00000087870,ENSRNOT00000020414 1 2 2 80 9 78314761 78315447 GACAACACAGTAACTCATGTC 57 78314701 78314719 TCCATTGAGAATCCCAAGC 58 NA Rattus norvegicus 81 Olr341 ENSRNOG00000050798 ENSRNOT00000072071 3 1 1 60 1 229765037 229765056 CTCATCTACACCATCACCCT 59 229764996 229765014 AGTCCAAGACAATCAGCAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC099384.2 ENSRNOG00000056621 ENSRNOT00000080099 2 1 1 175 14 10694137 10694156 AATGTGACTGCTTTGATGGC 60 10686343 10686361 GAGGAACTCCTGTGGAGAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Myo10 ENSRNOG00000010161 ENSRNOT00000065897,ENSRNOT00000014022 1 2 2 80 2 78037568 78038096 GAAGAAAGAGAAAGAAAGCGAG 58 78038675 78038694 TTGTTGCTTCCTTGTTTCTG 57 NA Rattus norvegicus 81 E2f1 ENSRNOG00000016708 ENSRNOT00000022115,ENSRNOT00000086933 3 2 3 80 3 150050879 150050898 ATCAGCTACAAGCCCTACAG 59 150050552 150050836 TTTCTTCATCCAACCGCTG 59 NA Rattus norvegicus 81 Tex30 ENSRNOG00000011658 ENSRNOT00000015600 3 1 1 83 9 50868152 50868171 CTTCGAGCGTGTTAGTTAGC 59 50867701 50868106 AAACCCAATTCAGCGAACG 60 NA InUTR Rattus norvegicus 81 Gimap6 ENSRNOG00000033338 ENSRNOT00000049038 2 1 1 80 4 78342646 78342665 AAATCCACTGGAGTCCAGTG 60 78339921 78342603 TCTTCTTCCATCACTGGGC 59 NA Rattus norvegicus 81 Pspc1 ENSRNOG00000020782 ENSRNOT00000076913,ENSRNOT00000028219,ENSRNOT00000075879,ENSRNOT00000088037 1 4 6 80 15 36972824 36976235 CATGGGAGATGCATTTAGCC 59 36972763 36972786 CCTCTGTTGTTCATATTCATACCC 59 NA Rattus norvegicus 81 Twist1 ENSRNOG00000011101 ENSRNOT00000014763 3 1 1 165 6 53401920 53401938 GAGCTGGACTCCAAGATGG 60 53402063 53402582 GGAAACAATGACATCTAGGTCTC 59 NA InUTR Rattus norvegicus 81 Ado ENSRNOG00000000639 ENSRNOT00000000791 3 1 1 80 20 22448226 22448247 GAAGACCTTAACATCGCACC 59 22448289 22448308 GATGTGCATGTAAGTGACCG 59 NA Rattus norvegicus 81 Zmynd8 ENSRNOG00000019154 ENSRNOT00000079324,ENSRNOT00000068328 3 2 2 80 3 162492292 162492313 CTGAGGATTGAGATTGAGAAGC 59 162491464 162492253 CATGGTCAACTCCAAGTTGTG 60 NA Rattus norvegicus 81 Tlcd2 ENSRNOG00000037275 ENSRNOT00000056355 1 1 1 80 10 62304518 62305234 CACCACCTAGTGGTAGTGAG 59 62305272 62305295 AAGTAGAGATACCATAGAGAAGCC 59 NA Rattus norvegicus 81 Tex21 ENSRNOG00000038496 ENSRNOT00000088808 3 1 1 83 6 99257874 99257894 ACAGAATCTCAGAGTTTCGGA 59 99254401 99257829 CAGGTGCTCCCTTAGACAG 60 NA Rattus norvegicus 81 Rn60_5_0814.23 ENSRNOG00000051022 ENSRNOT00000076135 2 1 1 61 5 77605865 77605886 GGATACAAAGCTAGAGAACTGC 59 77605097 77605844 GTCTGGGATCTTGATTTCCT 57 NA DesignNoJunction Rattus norvegicus 81 LOC498933 ENSRNOG00000011671 ENSRNOT00000015541 2 1 1 80 19 32376406 32379111 TACTGAGACAACTTCAGCGA 59 32379154 32379172 AGGAGAATCGATCCGTGTC 59 NA Rattus norvegicus 81 Rn60_6_1087.2 ENSRNOG00000052719 ENSRNOT00000090480 3 1 1 60 6 99249912 99249930 GGAACACATTGACCTGGAC 59 99249952 99249972 GAAAGTCAAGCCATAGATGCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0592.1 ENSRNOG00000051296 ENSRNOT00000076286 1 1 1 80 X 58335563 58335687 GAGGAACTTCTTTCTGCATAGTG 60 58335724 58335745 TAGCACCAACACAATATGAGTG 59 NA Rattus norvegicus 81 LOC679894 ENSRNOG00000042340 ENSRNOT00000061664 2 1 1 60 14 6582806 6582827 AGAGAATGTTAAAGGAGGAGAG 57 6582767 6582786 GGAAACAGGTGATTTCAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc7a ENSRNOG00000014879 ENSRNOT00000061747,ENSRNOT00000086247 3 2 2 80 6 10992996 10994442 CGCAGACTCTGGTTCTAGG 60 10994484 10994504 GTCGTTATGGTTAGCTCTGAC 59 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000076173 3 1 6 60 14 44526228 44526248 TCTACCACTGAGCTAAATCCC 59 44526270 44526288 AGCTTTGCTTTACCGTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003616.1 ENSRNOG00000038697 ENSRNOT00000035149 1 1 1 60 1 116919070 116919088 AGTCTCACTTCACCCTCCA 60 116919028 116919046 AAGTTGCACTTGAAGGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nrgn ENSRNOG00000010688 ENSRNOT00000014404 3 1 1 115 8 40016595 40016615 ATAAAGAGTGGAGAGTGTGGC 60 40016299 40016521 CGTTCAGTTCTGGCTTAATCTC 60 NA InUTR Rattus norvegicus 81 Scgb2a2 ENSRNOG00000020305 ENSRNOT00000072584 1 1 2 80 1 225828091 225828110 CTGTGAAGCAATTCAAGCAG 58 225825561 225828049 ATATTGCCTCCATCATCACG 58 NA Rattus norvegicus 81 Ssc5d ENSRNOG00000016687 ENSRNOT00000022480 1 1 1 80 1 72446024 72451196 GCCTTCCAGACATAGATGAC 58 72445963 72445981 CTTTGGACAGACTCCTTCC 58 NA Rattus norvegicus 81 Rps3 ENSRNOG00000017418 ENSRNOT00000023935 2 1 1 80 1 164440109 164440128 CTACTCTGGAGTTGAAGTCC 57 164439836 164440068 CCAAGAACATTCTGTGTTCTG 58 NA Rattus norvegicus 81 Wac ENSRNOG00000018698 ENSRNOT00000058852 2 1 1 80 17 60895600 60895619 CCTCAGACTAACACAGTCCC 60 60893859 60895560 TACTGGAGTACTAACCTTTGGC 60 NA Rattus norvegicus 81 Glis2 ENSRNOG00000004766 ENSRNOT00000006680 3 1 1 82 10 11158674 11158775 AATGCCAGGTACAAGATGC 58 11158610 11158628 AAGCTCTTGTTACAGGTGG 57 NA Rattus norvegicus 81 Cdca2 ENSRNOG00000025302 ENSRNOT00000031163 1 1 1 80 15 44410335 44410354 TCTCCACAGTAACCGTAGAG 58 44408725 44410294 GGGAAGATGATGACTTTCCTG 59 NA Rattus norvegicus 81 Rnaseh1 ENSRNOG00000008584 ENSRNOT00000011819 3 1 1 80 6 47924249 47924268 AAGACGTGATCAACAAGGAG 58 47924311 47925047 CAGGAATGTGCATCCACTG 59 NA Rattus norvegicus 81 Gtf3c3 ENSRNOG00000002091 ENSRNOT00000082681,ENSRNOT00000002864 2 2 2 80 9 61022385 61023943 GGAAATCATAAGACAAGCTCCT 58 61022326 61022345 TCCATGTCACCTTGATCCTC 59 NA Rattus norvegicus 81 Cln6 ENSRNOG00000007164 ENSRNOT00000034926,ENSRNOT00000078091 1 2 2 80 8 67741612 67742496 CTTCTGCTAAAGCTGATGGA 58 67742536 67742557 CATGATGAATGTGATGATGCTG 58 NA Rattus norvegicus 81 Rhpn2 ENSRNOG00000011885 ENSRNOT00000016148 3 1 1 80 1 91616888 91624028 GAGAACCTTCTGAAAGTCACC 59 91624069 91624088 CAGGTCTGAGTTGACAAAGC 59 NA Rattus norvegicus 81 LOC685411 ENSRNOG00000049890 ENSRNOT00000041115,ENSRNOT00000042781 3 2 2 80 19 28292573 28293224 AACTTCTATCGCAACCTGC 58 28292511 28292529 CTCCTGCTTCAATGTGACC 59 NA Rattus norvegicus 81 Fxyd5 ENSRNOG00000021062 ENSRNOT00000028597,ENSRNOT00000089474 1 2 2 80 1 89468713 89468731 CAGGATCAAATCTCCCAGC 58 89467652 89468670 CTGTTCTCATTGGGATCCAG 58 NA Rattus norvegicus 81 Nosip ENSRNOG00000020543 ENSRNOT00000079189,ENSRNOT00000027882 2 2 2 80 1 101071337 101071355 GAAGGAGTCAGCCATTGTG 59 101071399 101071498 TGTTCACCATCTGTGTTGG 58 NA Rattus norvegicus 81 Psmd10 ENSRNOG00000057649 ENSRNOT00000083150 1 1 1 80 X 112328573 112328592 GAAGCTGGATGAGTTGAAGG 59 112324950 112328531 AATGCTGATTCTGCTGTCTG 59 NA Rattus norvegicus 81 Psmd10 ENSRNOG00000057649 ENSRNOT00000083150 3 1 1 80 X 112323348 112323457 AGAATAGGCATGAGATTGCTG 58 112323288 112323309 TTGCTGTAGCATCATAATGGTC 59 NA Rattus norvegicus 81 Rag2 ENSRNOG00000004623 ENSRNOT00000006097 1 1 1 73 3 91195186 91195208 AGGAAGTAGACTTCATACCTCTC 59 91196807 91196825 TGTAACCATCTGCAGGGAC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ntf4 ENSRNOG00000020783 ENSRNOT00000028194 2 1 1 90 1 101406343 101406363 ACTACCTGTATCCTACACAGG 58 101406415 101407022 TTTGCACACCTGTCAACAG 59 NA InUTR Rattus norvegicus 81 Plek ENSRNOG00000005214 ENSRNOT00000007044 2 1 1 80 14 100165321 100168085 CTGCTTCACAGGTAGTGGT 59 100165259 100165277 GAGATCATGAGGCCTTCCT 59 NA Rattus norvegicus 81 Xpo1 ENSRNOG00000009935 ENSRNOT00000014062 2 1 1 80 14 108034167 108034185 CCTTCCTAAAGGAGCATGG 58 108034228 108036324 ACATGTAATGAAGAGCCTCC 57 NA Rattus norvegicus 81 L3mbtl3 ENSRNOG00000011720 ENSRNOT00000061404 2 1 1 80 1 20045325 20045344 TGGCAGTCCTACCTTAAGAC 59 20045385 20047749 CGGGATCACTGTTATGTTCTG 59 NA Rattus norvegicus 81 Lipa ENSRNOG00000019077 ENSRNOT00000078279,ENSRNOT00000025845 2 2 2 80 1 252833127 252845843 TTGATAAAGGTCCCAAACCAG 58 252833067 252833085 TGTCAATGTTTGTGACCCA 58 NA Rattus norvegicus 81 Pramef12 ENSRNOG00000037035 ENSRNOT00000048232 2 1 1 80 5 162385403 162385425 GGATGTCTTACAAACCATACTGG 59 162385462 162385969 ATTCGAAGTCGGTAATTACTGG 58 NA Rattus norvegicus 81 Inmt ENSRNOG00000011250 ENSRNOT00000015316 2 1 1 82 4 85382539 85384581 GGGAGACAGAAGCAGATGG 60 85382475 85382494 TCTTGGTCACATCACACCTC 60 NA Rattus norvegicus 81 Dync1i2 ENSRNOG00000009781 ENSRNOT00000067729,ENSRNOT00000047243,ENSRNOT00000013400 3 3 3 80 3 57852882 57852905 TCTGATTAGCATCTCTACTGATGG 60 57852943 57853272 AACTCCATGCTATCCTGTGG 60 NA Rattus norvegicus 81 Smurf1 ENSRNOG00000000999 ENSRNOT00000084577,ENSRNOT00000082989 2 2 2 80 12 11503837 11504009 TTGAAAGATACCGGCTACCA 59 11504051 11504070 CACTATTTGGCCACGAACTG 60 NA Rattus norvegicus 81 LOC685351 ENSRNOG00000038499 ENSRNOT00000058683 2 1 1 84 13 84757294 84757733 ATCCAGTTCCAGACAAAGGT 59 84757229 84757247 CAGTCTCTACCACCACGTC 60 NA Rattus norvegicus 81 Rn60_X_0689.1 ENSRNOG00000026617 ENSRNOT00000036763 2 1 1 60 X 67981197 67981215 CCCGACCTGTACAAATCCT 59 67981236 67981257 CAAAGGGATCTTCAATGGACAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nid2 ENSRNOG00000000341 ENSRNOT00000000383,ENSRNOT00000082196 3 2 2 80 15 4894722 4894746 TACTGATGAGTATCTTCCTGAACAG 60 4894540 4894685 CACTTTCTTCCTGTTGGACAG 59 NA Rattus norvegicus 81 Dhrs3 ENSRNOG00000015736 ENSRNOT00000021155 2 1 1 81 5 162835406 162835748 CAATTCTGGACCACCAAGG 59 162835793 162835811 CAAGCACAGAATTGAGGCA 59 NA Rattus norvegicus 81 Mmp20 ENSRNOG00000021896 ENSRNOT00000033306 1 1 1 81 8 5842772 5842790 CTGATGTGGCTAACTACCG 58 5842830 5845995 GTGTACTTAGAGACTCTGTATGTC 58 NA Rattus norvegicus 81 Olr1249 ENSRNOG00000055051 ENSRNOT00000083649 3 1 1 60 4 1641088 1641107 TATGTACCTAAAGCCCTCCT 57 1641128 1641148 GAAGACAGAAGACACTTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajc5 ENSRNOG00000015202 ENSRNOT00000020581,ENSRNOT00000086046 3 2 2 81 3 177040813 177041755 AAGTCCTATCGGAAGCTGG 59 177041798 177041818 TCTCCTTAAACTTGTCTGCAG 58 NA Rattus norvegicus 81 Zdhhc18 ENSRNOG00000058156 ENSRNOT00000081470 3 1 1 80 5 151837878 151837898 CTTCACCTGTAAGATGTTCCG 59 151836409 151837836 TGATGGTCAAACCGTTCCA 60 NA Rattus norvegicus 81 Six3 ENSRNOG00000057031 ENSRNOT00000091510 3 1 2 212 6 8887114 8887134 CTTCTTGTTGACCTTCGCC 59 8887310 8887328 AACATGGACAACTCTTCCG 58 NA DesignRelaxed Rattus norvegicus 81 Bambi ENSRNOG00000016066 ENSRNOT00000021801 2 1 1 80 17 56906361 56906380 AAGACATGTGCAATTACCGA 58 56905868 56906320 GGTATCTGTTTCCTTGTCCTG 59 NA Rattus norvegicus 81 Smim5 ENSRNOG00000049642 ENSRNOT00000088665,ENSRNOT00000071694 2 2 2 89 10 104455968 104455988 CTGCTGAAACTGAAAGAACTC 58 104456039 104456439 CATCAGGACAGTAGCTGTG 58 NA Rattus norvegicus 81 Ccbl1 ENSRNOG00000016097 ENSRNOT00000021865 1 1 1 80 3 8754449 8754878 CCTTTAGGAAAGGTATTCTCTAGGA 59 8754393 8754412 AGAGATGCACAAGACATCGT 60 NA Rattus norvegicus 81 Cdh23 ENSRNOG00000033087 ENSRNOT00000048029 3 1 1 80 20 29984952 29985603 TATGAAGGCTATGGAGTGATCAG 60 29984894 29984914 GACGGTTAGGTATATCAGCCC 60 NA Rattus norvegicus 81 Cdyl2 ENSRNOG00000042888 ENSRNOT00000068440 2 1 1 80 19 49159220 49197720 TGTCATATCAAGGGTTGAAAGG 59 49159161 49159184 CCTTTCCATCGGATAAGATATTCC 59 NA Rattus norvegicus 81 Ovca2 ENSRNOG00000003111 ENSRNOT00000004150 3 1 1 188 10 62020463 62020481 CTGAGAGTACTGTGCCTCG 60 62020065 62020083 TTGCTCCTCTGGAGAACAG 59 NA DesignNoJunction Rattus norvegicus 81 Olr402 ENSRNOG00000046228 ENSRNOT00000041987 3 1 1 60 3 16001904 16001922 GAATCTGCAAAGCCTTGTC 57 16001941 16001964 CCATAGTACAGAGAAACAACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911776 ENSRNOG00000048071 ENSRNOT00000074282 1 1 1 60 1 156327081 156327099 CTTGAAACGCAGATCCGAC 59 156327039 156327057 CGAGTTGAGCAGTTCTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ndrg1 ENSRNOG00000007393 ENSRNOT00000010811 1 1 1 80 7 107741343 107742344 CCTACTCAAGATGGCAGAC 57 107739095 107739114 ACAAAGTACTTGAAGGCCTC 58 NA Rattus norvegicus 81 Hk2 ENSRNOG00000006116 ENSRNOT00000008813 3 1 1 80 4 113571953 113573161 TCTCGGATATTGAAGAGGATAAGG 60 113571896 113571914 CCTGCAATGGATTCAGACC 59 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000076035,ENSRNOT00000090799 2 2 6 80 5 47907010 47907029 AGCACAAGTTATCCTTCCTC 57 47907071 47907161 GAGCCTCTTCTAACAACCTC 58 NA Rattus norvegicus 81 Mapre1 ENSRNOG00000011798 ENSRNOT00000016220 3 1 2 80 3 149245823 149245841 TTTGCCAGGAGAATGAGGG 60 149245885 149247825 CAAAGCCTTCATCTGTGGC 60 NA Rattus norvegicus 81 Tctex1d2 ENSRNOG00000001758 ENSRNOT00000002397 1 1 1 80 11 71598263 71601516 CAGCAAAGGTTTAGACCCT 57 71598201 71598221 AGAATATTCAGCACCTGTCAG 58 NA Rattus norvegicus 81 Olr230 ENSRNOG00000019599 ENSRNOT00000026506 3 1 1 60 1 171179675 171179695 GCTGATCCTTTGTTCCTACAC 59 171179715 171179735 TTGAGCTGATGGAATCTTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aim2 ENSRNOG00000003480 ENSRNOT00000074608 3 1 2 60 13 91954394 91959724 AAGAAGCCTCAGAAGAAACAG 58 91959743 91959764 GCTGTAAATCTTCTCTGATGGC 60 NA DesignNoJunction Rattus norvegicus 81 Tp53i3 ENSRNOG00000005177 ENSRNOT00000076653,ENSRNOT00000006924 1 2 2 80 13 75118022 75118727 TCACTGACCAGAAGACCCT 60 75118768 75118789 TGCCATAAGATACTGGTAGGAC 59 NA Rattus norvegicus 81 rno-mir-6319-1 ENSRNOG00000050532 ENSRNOT00000074397 2 1 1 60 17 35477470 35477488 AGATGCCGAGAGGAATGAG 59 35477512 35477530 AGAAACTGAAGAGCAGGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem164 ENSRNOG00000012787 ENSRNOT00000068431 3 1 1 82 X 113949745 114016371 ATGATGCATATCTTCCTCCTG 57 114041551 114041570 CCATTCAACATGTGCATCTG 58 NA Rattus norvegicus 81 Cap1 ENSRNOG00000013492 ENSRNOT00000018711 1 1 1 80 5 140561255 140561609 ATGTCAAAGTTCAGGTGATGG 59 140561195 140561214 TCTTACTCAGGTAAGCGTGG 59 NA Rattus norvegicus 81 Uhrf1 ENSRNOG00000048411 ENSRNOT00000083848,ENSRNOT00000075265 2 2 2 81 9 10742951 10742969 GGATGACACTGAACCTGAG 58 10741400 10742908 TTCAGGATACTGCATAGTGAG 57 NA Rattus norvegicus 81 C1ql2 ENSRNOG00000046863 ENSRNOT00000071305 1 1 1 108 13 36378894 36378912 TACCACATCCTCATGCGTG 60 36379567 36379585 CATAATTCTGGTCCGCGTC 59 NA DesignNoJunction Rattus norvegicus 81 Krt71 ENSRNOG00000049495 ENSRNOT00000068533 1 1 1 81 7 143349774 143350183 TGCTGAAGAAGGATGTGGA 59 143349711 143349729 TTGATGTCCTGGTCCATGG 59 NA Rattus norvegicus 81 Zfand2a ENSRNOG00000032917 ENSRNOT00000047634,ENSRNOT00000083814 2 2 2 80 12 17254618 17257980 ATTCAAGAAGGATGTGCAGG 58 17258023 17258041 ACATCTGGGATGTCACCTC 59 NA Rattus norvegicus 81 Pskh1 ENSRNOG00000019290 ENSRNOT00000026163 1 1 2 91 19 37885154 37904545 GACAAGCAAGAAGTCATCACC 60 37904598 37904616 GTAAAGGAGGGTCTGGCAG 60 NA Rattus norvegicus 81 AABR07030798.1 ENSRNOG00000045888 ENSRNOT00000075706 2 1 1 94 10 104933478 104935460 TATGGTCCCAGGTTTGAGG 59 104935518 104935536 CATTTGTGGTCATGCTGGG 60 NA Rattus norvegicus 81 Tyrobp ENSRNOG00000020845 ENSRNOT00000028284 2 1 1 80 1 88875481 88875500 GTGCTTTCTGTTCCTTCCTG 59 88875988 88876144 CATCCTGGGTAATTGTCACTC 59 NA Rattus norvegicus 81 Upf1 ENSRNOG00000020134 ENSRNOT00000027268 2 1 1 80 16 20836879 20836898 CAGTACCAGAACATCTTCGG 58 20836940 20837401 ATCTTGAGTCTGTGACTCCT 58 NA Rattus norvegicus 81 Sparc ENSRNOG00000012840 ENSRNOT00000017486 3 1 1 81 10 40751210 40751859 GGAGACAGGGTTACCTGTG 59 40751147 40751165 CTCGACAGTTTCCTCTGCA 60 NA Rattus norvegicus 81 Prorsd1 ENSRNOG00000004145 ENSRNOT00000005504 2 1 1 121 14 113938953 113940211 CATCCGGAGGTGTTTACAG 58 113938850 113938871 AGAACTGTGACTAACCAATAGC 58 NA Rattus norvegicus 81 Flg2 ENSRNOG00000050967 ENSRNOT00000074518 3 1 1 80 2 193483916 193484679 CGGCCAATTCTGAAGAATCC 59 193484722 193484740 CCTTCGGTCATGATCTCGA 59 NA Rattus norvegicus 81 Plaur ENSRNOG00000037931 ENSRNOT00000075167,ENSRNOT00000074985 2 2 2 83 1 81343470 81343488 GTTCCTACGAAGAGACGTC 57 81343536 81344485 TTTCCCAGCACATCTAAGC 58 NA Rattus norvegicus 81 Dhrs13 ENSRNOG00000009673 ENSRNOT00000012825 2 1 1 113 10 65332886 65332904 CATCTTCATGGCCTTGGAC 59 65332652 65332810 GAACTGATCCCTGCATTGTG 59 NA Rattus norvegicus 81 Elk4 ENSRNOG00000007887 ENSRNOT00000065094,ENSRNOT00000087504,ENSRNOT00000090233 3 3 3 109 13 48801361 48804630 AATACGCTCTTCCAGTTCCC 60 48804702 48804720 GTCTTCTGCAGGTCTGGAG 60 NA Rattus norvegicus 81 Qk ENSRNOG00000048297 ENSRNOT00000089149,ENSRNOT00000035402,ENSRNOT00000023290,ENSRNOT00000086441 1 4 4 80 1 50828658 50828677 GAACTTATGGAGCAGCAAGC 60 50828717 50864549 ACTCTGCTAATTTCTTCGTCCA 60 NA Rattus norvegicus 81 Spdef ENSRNOG00000000491 ENSRNOT00000079933,ENSRNOT00000000583 2 2 2 127 20 7296595 7298837 GAATATCACAGCCGACCCT 59 7296486 7296504 ATAGCTCTTTGCCACCCAG 60 NA Rattus norvegicus 81 RGD1561778 ENSRNOG00000046216 ENSRNOT00000083683,ENSRNOT00000074003 3 2 2 85 10 104997967 104997987 GGAACACCATTTCCCTATCAC 59 104998034 104999841 CTCCAAAGGCTTGAACCTG 59 NA Rattus norvegicus 81 Prss27 ENSRNOG00000005336 ENSRNOT00000007392,ENSRNOT00000070981 3 2 2 107 10 13417263 13417281 GTACAGCAAGGATGCTGAG 58 13417352 13417868 CCAGAGTCACCCTTACAGG 59 NA Rattus norvegicus 81 Rfc3 ENSRNOG00000001088 ENSRNOT00000001444 1 1 1 80 12 1464212 1464231 ATCCAGGAGATGCTGAAGAC 59 1464270 1465888 CAGTAACACCACTTTGAAGTCTC 60 NA Rattus norvegicus 81 LOC102554255 ENSRNOG00000050376 ENSRNOT00000050154 2 1 1 60 4 88232276 88232296 TCTATCTGTATCACCTGCCTC 59 88232317 88232336 AGGTAATGGGACTGATTGTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Potea ENSRNOG00000056767 ENSRNOT00000088403,ENSRNOT00000079671 1 2 4 97 14 85876553 85879203 AAAGTTCTCAGCTGTCGGA 59 85879264 85879282 CTCAGACAGGAGACAGGTC 59 NA DesignNoJunction Rattus norvegicus 81 Mau2 ENSRNOG00000020526 ENSRNOT00000027846 1 1 2 80 16 21142670 21143069 GTTGATATCACAGCAAATCCC 57 21143109 21143129 TCTTGACAATACAGCTCTGAC 58 NA Rattus norvegicus 81 Psenen ENSRNOG00000020941 ENSRNOT00000028438 2 1 1 80 1 89016345 89016555 CCAAATCAAAGGCTATGTTTGG 59 89016286 89016304 AAGATGGTGATCCAGGTGG 59 NA Rattus norvegicus 81 Vsx2 ENSRNOG00000011918 ENSRNOT00000015889 2 1 1 86 6 108287551 108287569 GATGTTTCCTCCAGTGACC 58 108287619 108291966 AAAGATTGTCCTGTGTCGC 59 NA Rattus norvegicus 81 Lipf ENSRNOG00000019448 ENSRNOT00000027969 2 1 1 80 1 252289308 252289328 GAGGAAATACATGGTCCAGGA 59 252289367 252290450 CCATTTCATCAAAGCTGAAAGC 59 NA Rattus norvegicus 81 Atp8b1 ENSRNOG00000024952 ENSRNOT00000038652 3 1 1 80 18 60063639 60063658 TTCTGCTATTGTCCAGCTCC 60 60062332 60063599 ACTTCAAATTGGTTTCTCCGTC 60 NA Rattus norvegicus 81 Ifrd1 ENSRNOG00000050997 ENSRNOT00000073910 1 1 1 80 6 60145840 60145860 CGCATCCATTGAAACAATGAG 59 60145647 60145798 TCAAGAACTTCTGGTCCGT 59 NA Rattus norvegicus 81 Olr631 ENSRNOG00000032712 ENSRNOT00000050173 3 1 1 60 3 76718462 76718482 ACATTTGCTATACCTCCTGTG 58 76718422 76718443 TTTCTCTTTACAAGCAGATCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tnr ENSRNOG00000002468 ENSRNOT00000076860 2 1 3 81 13 77626338 77626356 GAGCAGTACCATGAAGTGC 59 77626399 77626795 GAAATGAAGGAAGCAAACCTG 58 NA Rattus norvegicus 81 Trem2 ENSRNOG00000013578 ENSRNOT00000018351 2 1 1 82 9 14615344 14615362 TCTACCAGTGTCAGAGCCT 60 14612742 14615298 ATCTAGAGGGTCCTCCAGC 60 NA Rattus norvegicus 81 LOC498339 ENSRNOG00000029004 ENSRNOT00000044855 1 1 1 81 14 20468891 20474555 TTCGTCCCTATTCTCCCTC 58 20468828 20468846 CTTTGGAGCCATACACAGG 58 NA Rattus norvegicus 81 LOC498339 ENSRNOG00000029004 ENSRNOT00000044855 2 1 1 82 14 20468891 20474555 TTCGTCCCTATTCTCCCTC 58 20468827 20468845 TCTTTGGAGCCATACACAG 57 NA Rattus norvegicus 81 Slc4a7 ENSRNOG00000005957 ENSRNOT00000068171,ENSRNOT00000008759,ENSRNOT00000049771 2 3 3 80 15 11864042 11864061 TACTGTGCCTGTATGTCTCC 59 11860985 11864002 CTCTATTGCACTTATTCTGCCT 58 NA Rattus norvegicus 81 Vom1r70 ENSRNOG00000047591 ENSRNOT00000075356 1 1 1 60 1 103064552 103064570 TCTATCTCTGTCACCTGCC 58 103064593 103064612 AGGTACTGGGACTGATAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Npc1l1 ENSRNOG00000049955 ENSRNOT00000075827 3 1 1 80 14 86349577 86349596 AACCTTCTGATCACCTTGCT 59 86346605 86349535 AACATCTGGTCCCAGATAGC 59 NA Rattus norvegicus 81 Lcat ENSRNOG00000019573 ENSRNOT00000026585 1 1 1 96 19 37915658 37915754 TTGATAACACCAGGGTTGTC 58 37915581 37915599 GAGTAGGTCTTGCCAAAGC 59 NA Rattus norvegicus 81 Tom1l2 ENSRNOG00000003590 ENSRNOT00000083093,ENSRNOT00000067866 2 2 2 80 10 46633250 46633270 GCTCCCTACTCTACTCTACAG 58 46630567 46633209 CAGCCTAGCAATCTGTTCTG 59 NA Rattus norvegicus 81 RGD1304704 ENSRNOG00000000340 ENSRNOT00000049255,ENSRNOT00000092002 1 2 2 80 15 4891259 4893410 AATGAAAGAGGGCTTACCTG 58 4893569 4893588 GCAGCTTCATTAAGAACTGC 58 NA Rattus norvegicus 81 Fstl1 ENSRNOG00000002746 ENSRNOT00000003721,ENSRNOT00000091057 2 2 2 81 11 65807246 65810867 CTCTGCATTGAGCAATGCA 59 65807183 65807203 GAAGTTCACAATGGTTGAGGT 59 NA Rattus norvegicus 81 RGD1311933 ENSRNOG00000012581 ENSRNOT00000016989 1 1 1 80 1 31412897 31412915 CCACTGGAATGACAGACTG 58 31412959 31415627 AATTTACATCAGCCCACCA 57 NA Rattus norvegicus 81 Cat ENSRNOG00000008364 ENSRNOT00000011230 3 1 1 80 3 93399274 93399294 CACTGAAGATGGTAACTGGGA 60 93397773 93399233 AAGGATGGAAACAACATGGC 59 NA Rattus norvegicus 81 AABR07017140.1 ENSRNOG00000027633 ENSRNOT00000029140 2 1 1 80 15 12599594 12599613 TGAAGGAACTTCCATCTCCC 59 12589032 12599555 CATCAAGCTGTATAGTTGCAGTC 60 NA Rattus norvegicus 81 Sntg2 ENSRNOG00000004928 ENSRNOT00000066904 1 1 1 80 6 49123871 49135710 AAACAGATTGAAACGAAGGAGC 60 49123812 49123830 CTTGGCAGCAATGAAGGAG 59 NA Rattus norvegicus 81 Ppargc1b ENSRNOG00000017503 ENSRNOT00000023661,ENSRNOT00000066048 2 2 2 81 18 56639043 56639756 CTTGTGTCAAGGTGGATGG 59 56638980 56639000 TTATGCAGTTCTGTACAAGGC 59 NA Rattus norvegicus 81 Ppargc1b ENSRNOG00000017503 ENSRNOT00000023661,ENSRNOT00000066048 3 2 2 84 18 56637974 56637992 AGATGAAGATCCAAGCTGC 58 56636600 56637174 AAGAGGGTCACTTTGTGAC 57 NA Rattus norvegicus 81 Rap1a ENSRNOG00000032463 ENSRNOT00000047836 2 1 1 81 2 208210857 208210876 CAGTTCAGTTTGTTCAGGGA 58 208208086 208210815 TCTACTTCGACTTGCTTTCTG 58 NA Rattus norvegicus 81 Tmem203 ENSRNOG00000010894 ENSRNOT00000014454 3 1 1 60 3 2475389 2475407 TCGTCTCTTCCAAGATGGG 59 2475431 2475449 GGTGAGAACCCAGAAGAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Jak3 ENSRNOG00000018669 ENSRNOT00000079784,ENSRNOT00000025312,ENSRNOT00000080146 2 3 3 81 16 20112540 20112558 TTTCTTCTGCAAGGAGGTG 58 20112602 20112706 AAAGTCTAACGTGATGGGTC 58 NA Rattus norvegicus 81 LOC100362226 ENSRNOG00000024412 ENSRNOT00000032589 1 1 1 60 3 2405332 2405350 GTAGGAGCTGTGATCAACC 58 2405369 2405392 CAGAGATGATATACACGTTCTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Apoa4 ENSRNOG00000055909 ENSRNOT00000080658 1 1 1 80 8 50538238 50538260 ATTAAACATGCCGATGACCTG 59 50538298 50538320 CTCTGTTTCCTTGGTTAGATGTC 59 NA Rattus norvegicus 81 Hhex ENSRNOG00000016595 ENSRNOT00000022384 1 1 1 87 1 256104470 256104488 CAAGATGTTGCAGCTCAGC 60 256104729 256106593 AGGATTCTCCTGCTTCAGTC 59 NA Rattus norvegicus 81 Cacna2d1 ENSRNOG00000033531 ENSRNOT00000042914,ENSRNOT00000090240,ENSRNOT00000082161,ENSRNOT00000034969 3 4 4 80 4 15710914 15720302 GATAACAATGTGCTGGAGGA 58 15710853 15710875 GAGTCCAAAGATAGACCATAAGG 58 NA Rattus norvegicus 81 Cav3 ENSRNOG00000005798 ENSRNOT00000007601 3 1 1 95 4 144383179 144397817 GAGGACATTGTGAAGGTGG 58 144397876 144397894 GAAAGTGGTGTAGCTCACC 58 NA Rattus norvegicus 81 LOC100361636 ENSRNOG00000033346 ENSRNOT00000041470,ENSRNOT00000076177 1 2 2 60 14 107393319 107393337 CACCTTTGACAAACACGGA 59 107393359 107393379 ACGGCTTATTCCAAATCTACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Faxdc2 ENSRNOG00000027259 ENSRNOT00000036481 2 1 1 80 10 43505690 43509026 GACAAGAATGAGCCAGTAGAC 59 43505630 43505648 GAAAGAGATGACGCTCTGG 58 NA Rattus norvegicus 81 Gpc2 ENSRNOG00000001367 ENSRNOT00000001849 1 1 1 80 12 19596817 19597526 CTCCGCCTACAGATAACCC 59 19596755 19596773 GCTGACCACATTTCTTCCG 59 NA Rattus norvegicus 81 Akap11 ENSRNOG00000009987 ENSRNOT00000058148,ENSRNOT00000079978,ENSRNOT00000013333 2 3 3 85 15 60732498 60733222 ACATCAGACAGTGATGGACC 60 60728665 60728683 AGCAGAGTCTTTCCACTCG 59 NA Rattus norvegicus 81 Pcbp4 ENSRNOG00000012406 ENSRNOT00000017139 1 1 1 82 8 115163471 115163489 CCAAAGGAGCCACTATCCC 60 115163535 115163733 CTGGACAGAGAAACCCTGG 60 NA Rattus norvegicus 81 Pcbp4 ENSRNOG00000012406 ENSRNOT00000017139 2 1 1 83 8 115163471 115163489 CCAAAGGAGCCACTATCCC 60 115163536 115163734 CCTGGACAGAGAAACCCTG 60 NA Rattus norvegicus 81 Mxra8 ENSRNOG00000019244 ENSRNOT00000091205,ENSRNOT00000067252 2 2 2 80 5 173291895 173291915 ATAACATCCTGAAGGAGAGGG 59 173291953 173292136 TCCTGAACTCTTTATCCAGATCC 60 NA Rattus norvegicus 81 Zmiz2 ENSRNOG00000025923 ENSRNOT00000052002 1 1 1 80 14 86527424 86527701 ATATTCAGAACTCAGACTACGAGG 60 86527740 86527758 GTAGGTCAGGCTTCACAGG 60 NA Rattus norvegicus 81 Alkbh8 ENSRNOG00000024525 ENSRNOT00000084222,ENSRNOT00000003432 2 2 2 80 6 18900542 18900561 ATTCCTGCCCATATTGACTC 58 18900603 18912487 ATCCATAACAATCGCTGACC 58 NA Rattus norvegicus 81 Cope ENSRNOG00000020178 ENSRNOT00000027381 3 1 1 80 16 20863394 20863414 GATACTTGTCACAGCTGAAGG 59 20863257 20863354 GATCGAAATCGTTCTCCTTGG 59 NA Rattus norvegicus 81 Zfp641 ENSRNOG00000032447 ENSRNOT00000045473 3 1 1 125 7 139903264 139903284 GGATGTGTCCTTATGCTTCTC 59 139902601 139903177 GGGATGGGAAACCTCAGAG 60 NA Rattus norvegicus 81 Ccdc77 ENSRNOG00000037206 ENSRNOT00000056200 1 1 1 80 4 152861776 152863653 CTCTATAAGGCAACCATGAACAC 60 152861718 152861737 AGCTCTCCTGTTGCTATCAC 60 NA Rattus norvegicus 81 Nrk ENSRNOG00000008880 ENSRNOT00000057049 3 1 1 80 X 109990351 109992735 ATGCTGAAGTCAAGATAGTGGA 59 109992773 109992794 TACCAATGAAGCTATTTCTCCG 58 NA Rattus norvegicus 81 Ssu72 ENSRNOG00000017829 ENSRNOT00000024349 1 1 1 80 5 173181650 173181668 CCAGAACTGCAAAGACCTG 59 173181708 173182162 GAGTTCAGATCTTCTACAACCTG 59 NA Rattus norvegicus 81 Mlh3 ENSRNOG00000006699 ENSRNOT00000033493 2 1 1 80 6 109071579 109071600 TGTCTTCCACAATAATTCCTCC 58 109069623 109071539 AATGTTTGTGGTAAGACCGT 58 NA Rattus norvegicus 81 Adh4 ENSRNOG00000046357 ENSRNOT00000090253,ENSRNOT00000016891 2 2 3 81 2 243704534 243705923 CCAACTTCAAACCAGGTGAC 59 243705966 243705985 GTGAGAGGACTCAGACAGAG 59 NA Rattus norvegicus 81 Akr1c3 ENSRNOG00000017531 ENSRNOT00000023739 3 1 1 80 17 69761233 69767071 ATGCAACCGAAGAGAATCTC 58 69767114 69767132 AATCAATATGGCGGAACCC 58 NA Rattus norvegicus 81 Ogdh ENSRNOG00000005130 ENSRNOT00000083394,ENSRNOT00000057199 1 2 2 80 14 86473690 86474248 CCAGATGTCCTGCCTAACC 60 86474292 86474310 GCAGTTGACGACAATCCAG 59 NA Rattus norvegicus 81 Trmt11 ENSRNOG00000014240 ENSRNOT00000019436,ENSRNOT00000083276 1 2 2 80 1 29457448 29460726 GTTCATGGCTTGGGAAAGG 59 29460770 29460788 CTGACGAAGATTTGCCCTG 59 NA Rattus norvegicus 81 Fam49a ENSRNOG00000052758 ENSRNOT00000082616 1 1 1 80 6 37646984 37647003 GTCCTCCAAGATTCCGAGAG 60 37647043 37648174 TTGAATTGCATCTCGAATCTCC 59 NA Rattus norvegicus 81 Dnajc3 ENSRNOG00000010352 ENSRNOT00000014182 1 1 1 80 15 104222365 104223424 AATGTATGATGAAGCCATCCAG 59 104223464 104223483 TCTAAGCCTTCCCGAATCTG 59 NA Rattus norvegicus 81 Cyp17a1 ENSRNOG00000020035 ENSRNOT00000027160 2 1 1 80 1 266425942 266426119 CAGAAACTGGAGAAGCTAATCTG 59 266425884 266425903 GTCTATGGACTCCTTGTCGT 59 NA Rattus norvegicus 81 Gtf2h5 ENSRNOG00000018007 ENSRNOT00000024211 3 1 1 88 1 46979562 46983604 AGTGCTTATAGAATGCGATCC 58 46983651 46983672 CTTGAATGATGAACTTCTTCCC 58 NA Rattus norvegicus 81 Thoc7 ENSRNOG00000007701 ENSRNOT00000083787,ENSRNOT00000010675,ENSRNOT00000079000 3 3 3 80 15 12582389 12583429 AGACATTGGAGAATGACGAC 58 12583472 12583490 TCTATGGCTTAGGGTCTGC 59 NA Rattus norvegicus 81 Hypk ENSRNOG00000015703 ENSRNOT00000021091 1 1 1 83 3 113424598 113424757 GAAGATCTGGAGTTGATAATGACAG 60 113424798 113424816 CACATTGCCCATGTGTTCC 60 NA Rattus norvegicus 81 Dpp9 ENSRNOG00000050748 ENSRNOT00000075386 3 1 1 80 9 10857745 10857763 TGACTTCCAGTTTGTGCAG 58 10857806 10863408 CTACCATAAGGCATTCCCAG 58 NA Rattus norvegicus 81 Ndst1 ENSRNOG00000019014 ENSRNOT00000025881 2 1 1 80 18 55965786 55966436 TGTGCTCCTCAATCCTATCAG 59 55965726 55965745 TTGAAGGTGTACAGTCCCAG 59 NA Rattus norvegicus 81 Trim39 ENSRNOG00000000785 ENSRNOT00000077291 3 1 4 62 20 2501335 2502702 GAAGCCATTCCATCTGCAC 59 2502726 2502746 TTCTTGGAGAAGACGTTACTG 58 NA DesignNoJunction Rattus norvegicus 81 Snx31 ENSRNOG00000025501 ENSRNOT00000036852 1 1 1 80 7 75328482 75333675 GTCACTTCCCTTGGAACTC 58 75328420 75328441 GTACTGAAATCTCAGCTCTAGG 58 NA Rattus norvegicus 81 Perm1 ENSRNOG00000020244 ENSRNOT00000027476 2 1 1 108 5 173640821 173641567 TGAGAACCAGGACTGTGAC 59 173641633 173641657 CCAGATTCTACTTCATTCTTCTGAG 59 NA InUTR Rattus norvegicus 81 Dse ENSRNOG00000000824 ENSRNOT00000088287,ENSRNOT00000001093 2 2 2 80 20 27718060 27720736 CTGATGAACCAAGGGTACCT 59 27717999 27718018 CAAGACCAGAGACTTCTCCA 59 NA Rattus norvegicus 81 RGD1564425 ENSRNOG00000038259 ENSRNOT00000058238 1 1 1 60 3 123997020 123997040 CAGCAGATCAAACCTTACACC 59 123996980 123996999 ACCGTTTCTCATACAAGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dnajb2 ENSRNOG00000019506 ENSRNOT00000026467,ENSRNOT00000081958 3 2 2 80 9 82440878 82441073 TGGCAACTCTGATTTCTCCT 59 82441114 82441134 GTTGTGGACGTAGAAACAGAG 59 NA Rattus norvegicus 81 Eif4a2 ENSRNOG00000001815 ENSRNOT00000002484,ENSRNOT00000089294 1 2 2 80 11 81377444 81378174 AGAACTGGCTCAACAGATCC 60 81377383 81377401 CCTCCAATGCAAGCATGAC 60 NA Rattus norvegicus 81 Cd36 ENSRNOG00000040108 ENSRNOT00000075974 3 1 9 87 4 14040685 14040703 ATAAACGGAGGTCACAGGC 60 14040748 14070560 GTAAGCTACAAATAGTTCACAGAGG 60 NA Rattus norvegicus 81 Cradd ENSRNOG00000008507 ENSRNOT00000063946 1 1 1 78 7 36407102 36407120 AAGCTGGAGAAGGCAAGAG 60 36395966 36395984 GCTTCTCAGGCAAATGGTC 59 NA DesignNoJunction Rattus norvegicus 81 Cradd ENSRNOG00000008507 ENSRNOT00000063946 3 1 1 101 7 36407123 36407143 AGGAATTTCCCTGGGTAAGAG 59 36395966 36395984 GCTTCTCAGGCAAATGGTC 59 NA DesignNoJunction Rattus norvegicus 81 RGD1561748 ENSRNOG00000028214 ENSRNOT00000030164 3 1 1 80 7 17859329 17859349 AAGCAAGTGGAAGAAACATGG 60 17853390 17859289 ATACATAGACCATGGCAGGAG 59 NA Rattus norvegicus 81 Slc25a43 ENSRNOG00000012756 ENSRNOT00000017026 3 1 1 82 X 123362830 123382152 AAAGATGCAGGCTCAAAGC 59 123382198 123382216 GTCTGAAGCAGTCAACTGC 59 NA Rattus norvegicus 81 Usp37 ENSRNOG00000022720 ENSRNOT00000032719 1 1 1 80 9 81768982 81769002 TAAGGATGCAGAGGAAATGAG 58 81764714 81768943 CCTTGAGAAGATTTCATAGCTG 57 NA Rattus norvegicus 81 RT1-M10-3-ps ENSRNOG00000051398 ENSRNOT00000039155 1 1 1 80 20 2291740 2291971 GGACAGCAATGATTATCACACC 60 2291681 2291699 TATTGACCGCGAAGGAAGG 60 NA Rattus norvegicus 81 AABR07073181.1 ENSRNOG00000021437 ENSRNOT00000039341 1 1 1 80 5 155871443 155871463 ATACGCTCTCCTACACATCTG 59 155871505 155871779 GCATGATGTTATTGCCCGT 59 NA Rattus norvegicus 81 Appbp2 ENSRNOG00000027654 ENSRNOT00000033684 2 1 1 80 10 72512307 72512328 TTGGTATCATTACCCACATCCT 59 72510662 72512271 CCTCTAATATAAGTGCTTTCACCC 59 NA Rattus norvegicus 81 Phyhd1 ENSRNOG00000016794 ENSRNOT00000022552 1 1 1 83 3 8832806 8835816 TCAAGAAGTTCCAGGAGGAC 59 8835862 8835880 CAATCCTCTGCTGCATGAC 59 NA Rattus norvegicus 81 Adh7 ENSRNOG00000032959 ENSRNOT00000015870 3 1 1 81 2 243512602 243512620 GATGCTCAGCTATGACCCA 59 243512664 243513362 ATCTCTGCTCTTCCAACCAC 60 NA Rattus norvegicus 81 Mettl10 ENSRNOG00000017137 ENSRNOT00000023121 3 1 1 61 1 204836773 204836794 AATAACCTCCTGTAATTGGACC 58 204831911 204836754 GTTCAAATCCTTCACTGAATGC 59 NA DesignRelaxed Rattus norvegicus 81 LOC100364002 ENSRNOG00000050457 ENSRNOT00000072249 2 1 1 80 X 124000709 124001351 CTTGCGAACAAGGAAGGAC 59 123999894 123999913 GATCTTCTCATCCGGAACCA 59 NA Rattus norvegicus 81 Ccni ENSRNOG00000002125 ENSRNOT00000002924 2 1 1 80 14 16358558 16362834 CTTCAGAAAGCACAGATGGAC 59 16362876 16362894 AGACTGCAGAGCAGAAAGG 60 NA Rattus norvegicus 81 RGD1559644 ENSRNOG00000042808 ENSRNOT00000068281 3 1 1 81 5 162750985 162751004 AATTCCATCTACCCTGAAGC 57 162742604 162750944 TATGGTTCCCAAAGTTATCAGG 58 NA Rattus norvegicus 81 Rn60_X_0675.1 ENSRNOG00000051104 ENSRNOT00000076769 1 1 1 60 X 66668192 66668211 AGTCCTGCACAAATTCACTG 59 66668151 66668169 GGCTGATTGACCTCCTCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0675.1 ENSRNOG00000051104 ENSRNOT00000076769 3 1 1 60 X 66667512 66667533 GTTAAGTCACAAGAAGGATCAC 57 66667473 66667492 GCAAGATACCTCCAATTCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Epm2a ENSRNOG00000040242 ENSRNOT00000061930 1 1 1 80 1 5449250 5505163 ACTGGGAAGGAAATGGACC 59 5505204 5505225 GGAGACAATAAACACCATCCAC 59 NA Rattus norvegicus 81 Kbtbd6 ENSRNOG00000047604 ENSRNOT00000071455 2 1 1 60 15 61731931 61731950 GCCCAGAGGAATTAAAGGAC 58 61731973 61731991 AAAGACTTGAGCTGTGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Csnk1a1 ENSRNOG00000017106 ENSRNOT00000044346,ENSRNOT00000066133,ENSRNOT00000078783 2 3 3 80 18 56899339 56899359 CGAAGACCTCTTCAATTTCTG 57 56899398 56900108 ATTCTACTGATCATCTGGTCAG 57 NA Rattus norvegicus 81 Hdac1l ENSRNOG00000009568 ENSRNOT00000012854 2 1 1 80 5 147721742 147721760 CTACGCCGTTAACTACCCA 59 147719636 147721698 ACTTTGGACATGACTGGCT 59 NA Rattus norvegicus 81 Treml1 ENSRNOG00000040109 ENSRNOT00000018138 2 1 1 80 9 14597727 14598326 GGAAATTCAGGCATGGACC 59 14597665 14597685 CCTCATATGTGGTATGTCCGA 59 NA Rattus norvegicus 81 Rpl26-ps2 ENSRNOG00000039783 ENSRNOT00000061041 3 1 1 60 1 31527940 31527959 ATAATGTTCGGTCTATGCCC 58 31527899 31527918 TAGTGTCCTCGAACAACCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC290415 ENSRNOG00000038078 ENSRNOT00000057935 1 1 1 60 15 73180486 73180505 TTGGCCTAAGCAGAATTGGA 60 73180445 73180466 GTCTTCATTCCAAAGGACTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC290415 ENSRNOG00000038078 ENSRNOT00000057935 2 1 1 60 15 73180342 73180363 TCTCTGTGATTTCATCACTGTC 58 73180303 73180321 ATTGAGCAAGCCTGTAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912534 ENSRNOG00000001748 ENSRNOT00000002382 2 1 1 80 11 82859842 82859947 TTTACCCTGTAGACTTAGGTGAC 59 82859784 82859803 CACCATCATCCAAGGTACCA 60 NA Rattus norvegicus 81 Trip13 ENSRNOG00000015810 ENSRNOT00000081471,ENSRNOT00000021532 3 2 2 80 1 31979807 31980077 TTCTGATTGATGAGGTGGAG 57 31980120 31980138 CACGGATAGCATCTGATGG 58 NA Rattus norvegicus 81 Chst8 ENSRNOG00000022919 ENSRNOT00000037700 3 1 1 85 1 90616322 90616340 GACCCTATAGAGCTCAGCC 59 90543562 90543988 CTCAAGTGGCTATCATGCTG 59 NA Rattus norvegicus 81 Car3 ENSRNOG00000010079 ENSRNOT00000014180 3 1 1 81 2 88130637 88130657 AAGTATAACACCTTCGGAGAG 57 88129787 88130594 TCTCCCGTCCTATCTTCAG 58 NA Rattus norvegicus 81 Rfx3 ENSRNOG00000014486 ENSRNOT00000023762,ENSRNOT00000077544 3 2 2 80 1 245877514 245877535 ATGTTCTACTTAGTAGAGCACC 57 245862399 245877473 TAAATCACCAAACTCGCCC 58 NA Rattus norvegicus 81 Rpl22l2 ENSRNOG00000029173 ENSRNOT00000040366 2 1 1 60 3 122285542 122285563 CAAGGAGACTTATGAACTTCGT 58 122285583 122285602 AGACTCTGAACCATCTTCGT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl22l2 ENSRNOG00000029173 ENSRNOT00000040366 3 1 1 60 3 122285346 122285366 AACAGTTTCTACGGGAGAAGG 60 122285385 122285406 ACAACATTCCCAAGATTTCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pmm2 ENSRNOG00000002615 ENSRNOT00000003542 3 1 1 80 10 7071512 7071532 CAGAAGACCAAGATTGGAGTG 59 7068919 7071473 TTTCTCAACCACATCATTTCCC 59 NA Rattus norvegicus 81 Cdv3 ENSRNOG00000010186 ENSRNOT00000082097,ENSRNOT00000044956 2 2 2 87 8 111840630 111843633 TCCAGTAACAGTTACAGAAACC 58 111840564 111840582 TTTCCTTGTCGTGGTTAGC 58 NA Rattus norvegicus 81 Fpr3 ENSRNOG00000042605 ENSRNOT00000064917 1 1 1 60 1 59801660 59801679 AACTGTTGAAGAAGTGCTGG 59 59801619 59801638 CCTGATGGTCCCTCTAACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Eif3h ENSRNOG00000040153 ENSRNOT00000061786 3 1 1 80 6 108753701 108753720 CCTCTCCAAACTCTTCAAGC 59 108753760 108756051 CAGTAAGTGTTAATCTGGCCTG 59 NA Rattus norvegicus 81 Map3k7 ENSRNOG00000005724 ENSRNOT00000007654 3 1 1 80 5 47232161 47232179 CACTACCTCAGGACCAACC 59 47232222 47237548 GAGCCATTGGTATCTGTGGA 60 NA Rattus norvegicus 81 RT1-T18 ENSRNOG00000030666 ENSRNOT00000084324 3 1 4 60 20 3115993 3116011 TGACCATCTGGTCAGAACC 59 3116033 3116053 ACTCTTTGGTAGGAGTCTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rabgap1l ENSRNOG00000002736 ENSRNOT00000075887,ENSRNOT00000087506 2 2 4 80 13 78196455 78196473 ACATCATTGACCTGCTGCT 60 78089875 78148182 CTTCCTTTGAGGTCTTTAGAAGAG 59 NA Rattus norvegicus 81 Thumpd1 ENSRNOG00000014946 ENSRNOT00000020077 1 1 1 80 1 189459586 189460602 AGAGTTGGCAGGAATAGTAGG 59 189459526 189459547 TCTACTACCACCGTGTATTCTG 59 NA Rattus norvegicus 81 LOC689701 ENSRNOG00000046189 ENSRNOT00000044669 3 1 1 80 8 44664777 44666216 ATATCTGAAGACTGGGATGTG 57 44666257 44666276 TCCTGCAATACATGTCTCAC 58 NA Rattus norvegicus 81 Lzic ENSRNOG00000016200 ENSRNOT00000021822 1 1 1 80 5 166437470 166437488 GGAAAGAGACCTGCATACC 58 166437531 166437929 TCATCATCTGTCAGCTTCTC 57 NA Rattus norvegicus 81 Tmem255a ENSRNOG00000028085 ENSRNOT00000077697,ENSRNOT00000036472 1 2 2 80 X 124442856 124442876 TATCAGCTTTGGTGTGATTGC 59 124436103 124442817 GGTTTCAAATCAATGTGTCTGG 59 NA Rattus norvegicus 81 LOC100910668 ENSRNOG00000046526 ENSRNOT00000074267 3 1 1 84 9 14951090 14951807 CAAGTGACTTCGGAGAGGA 59 14951852 14951873 TTGTCCCAAATATCTTCCACTG 59 NA Rattus norvegicus 81 Mrps36 ENSRNOG00000017757 ENSRNOT00000023948 2 1 1 85 9 82070930 82070948 TAAGCTCAGTGCCTCAGAC 59 82070999 82071123 TTCCTTTAGAATGATGCTGGG 58 NA Rattus norvegicus 81 Prkd2 ENSRNOG00000016434 ENSRNOT00000022360 2 1 1 80 1 78783726 78789922 CTTATCACGCAGATTCTGGT 58 78789963 78789983 CACATTCTCTGGTTTCAAGTC 57 NA Rattus norvegicus 81 Dmrtc1a ENSRNOG00000048295 ENSRNOT00000074259 2 1 1 67 X 72650456 72650761 GAAGAAGGAGTTCGCACTG 59 72650792 72650810 TGAGTTGCTGTGTCAACCT 60 NA DesignNoJunction Rattus norvegicus 81 Cdan1 ENSRNOG00000047427 ENSRNOT00000014664 3 1 1 80 3 112675044 112675062 AGAGTGTCTTCTCGACAGC 59 112674854 112675004 AAGGTTTGGTACTAGGTTCTCAG 60 NA Rattus norvegicus 81 Tifa ENSRNOG00000010941 ENSRNOT00000083193,ENSRNOT00000014533 2 2 2 65 2 232129925 232135436 CCACTGGAAGACTCTCAGG 59 232135464 232135483 GTCTCTTCTGTATCAGCGTC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Immp1l ENSRNOG00000004829 ENSRNOT00000006406 2 1 1 80 3 96002491 96002511 AGAGTAATTGGTTTGGAAGGG 58 96002552 96023075 TGTTGGTACATAGTTACGGC 58 NA Rattus norvegicus 81 Abcc4 ENSRNOG00000010064 ENSRNOT00000031036,ENSRNOT00000013366 2 2 2 80 15 103766274 103766292 GTTTCTCCAAGGACATCGG 58 103747168 103766230 CAACAAGGAGCAAGGTCTG 59 NA Rattus norvegicus 81 Rn60_7_1411.3 ENSRNOG00000054046 ENSRNOT00000083662 3 1 1 86 7 143239555 143239573 GAAGGAGTACCAGGAGCTC 59 143238805 143239506 ACCTTTCAACCTTCCAACAG 58 NA Rattus norvegicus 81 Cep126 ENSRNOG00000021839 ENSRNOT00000029887 1 1 1 84 8 6261511 6261529 CTATCTGTGCCCTCTCAGC 60 6258710 6261466 GCTTCTTGTACATAGTACAGCC 59 NA Rattus norvegicus 81 Rspo2 ENSRNOG00000037687 ENSRNOT00000087177,ENSRNOT00000082741,ENSRNOT00000067333 3 3 3 80 7 81991901 81991920 ATGGAGAGTGTCTGCATTCC 60 81978550 81991859 TTCTGCATCTTGCACATCTG 59 NA Rattus norvegicus 81 Cobl ENSRNOG00000004281 ENSRNOT00000086154,ENSRNOT00000064483 2 2 2 80 14 92361750 92361769 CCAGTAAATGCTAGGCAAGC 59 92344372 92361707 GAGCAAGGGAACCTTTCTG 59 NA Rattus norvegicus 81 Rn60_X_0698.2 ENSRNOG00000023879 ENSRNOT00000035857 2 1 1 60 X 68874560 68874578 CTCGTGCTATTGTTGTGGT 58 68874518 68874537 GTGTTCCTGGAGGAGATCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ppp2r5a ENSRNOG00000000068 ENSRNOT00000000078 2 1 1 80 13 110036076 110036094 ATCGATAAGATCCTGCCCA 58 110035474 110036036 CAGAGCTACAATAGTCTGATTCC 59 NA Rattus norvegicus 81 Ap3s2 ENSRNOG00000043141 ENSRNOT00000068084,ENSRNOT00000082591 3 2 2 81 1 141641730 141641751 TTGTGGAGACTCTGGATAAGTG 60 141615632 141641690 AGGATGTAGTGCACCTTATCC 59 NA Rattus norvegicus 81 Flvcr2 ENSRNOG00000008754 ENSRNOT00000011599,ENSRNOT00000085031,ENSRNOT00000089972,ENSRNOT00000082402 1 4 4 80 6 109674114 109674132 CTGTGGAGCTCACATACCC 60 109674174 109674316 AGATGATCCCGAATACCTGTG 60 NA Rattus norvegicus 81 Rpl38 ENSRNOG00000033686 ENSRNOT00000050489 3 1 1 60 14 104453010 104453029 GTAAAGTTCAAGGTCCGCTG 59 104453050 104453070 TCTCCTTGTCTGTGATAACCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nrtn ENSRNOG00000048651 ENSRNOT00000072592 1 1 1 169 9 10305522 10305540 TGCTGTCTGTCTGGATGTG 60 10306130 10306148 AAGTTCTCGAAGCTCCACC 60 NA DesignNoJunction Rattus norvegicus 81 G3bp2 ENSRNOG00000002433 ENSRNOT00000003346 1 1 1 80 14 17507828 17509554 CTCCTGAAGGATCTGTTCCA 59 17509593 17509615 CGGAATCTCCAAATACTTCATCC 59 NA Rattus norvegicus 81 Blnk ENSRNOG00000013967 ENSRNOT00000019014 3 1 1 80 1 260187393 260192872 AATGGCGAAGAGTACTTTGGA 60 260187333 260187354 CTGACTGTCAATAAGAACCAGG 59 NA Rattus norvegicus 81 Gdi2 ENSRNOG00000018091 ENSRNOT00000024952 1 1 1 80 17 70310605 70313638 CCTTATGGCCAATGGTCAG 58 70310543 70310563 CCTTCGATCACTTTGAAGTCC 59 NA Rattus norvegicus 81 Gcfc2 ENSRNOG00000006888 ENSRNOT00000009104 1 1 1 80 4 112671478 112671497 AGGAAGATGAAAGCCAAGAC 58 112671538 112676129 GGTCTATACTTTGTCCCTCTG 57 NA Rattus norvegicus 81 Psd ENSRNOG00000019435 ENSRNOT00000026378 1 1 1 80 1 266061914 266062037 CTACCTGCAGAAGGAGGAG 59 266061852 266061870 GCGTGGTGAATGCTAATGG 60 NA Rattus norvegicus 81 Olr213 ENSRNOG00000048519 ENSRNOT00000046171 3 1 1 60 1 170840603 170840623 TGTGGTCTTCTACTATGGGTC 59 170840563 170840581 CATTGTCTTGGAGTTGGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Scx ENSRNOG00000021812 ENSRNOT00000029768 3 1 1 225 7 117519614 117519632 CTACATTTCTCACCTGGGC 58 117519819 117520724 GTCTTTGCTCAACTTTCTCTG 58 NA DesignRelaxed Rattus norvegicus 81 LOC100911529 ENSRNOG00000046921 ENSRNOT00000078671,ENSRNOT00000075775 1 2 2 80 12 2905172 2906613 TCATTGTCAAAGGCACTGAG 59 2906656 2906674 CCTGATCCAGTTTCTGGTG 58 NA Rattus norvegicus 81 Tk1 ENSRNOG00000047314 ENSRNOT00000071420 1 1 1 80 10 106819236 106819332 TGGAGAAAGAGGTGGAGGT 60 106819174 106819198 CTGAAGACTTCTTAAAGTAGCACAG 60 NA Rattus norvegicus 81 Mrpl16 ENSRNOG00000021005 ENSRNOT00000028517 1 1 1 64 1 228142912 228143205 TTCAGATACTTGGGCAGCC 60 228143233 228143251 AAGTTGGAACTGGGAGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Smim8 ENSRNOG00000023035 ENSRNOT00000035840,ENSRNOT00000089172 1 2 4 60 5 50232939 50232957 ACAACCTTGTTTCGAGCTG 59 50231070 50232916 CCATCACAGGTTTGTTAGGT 58 NA DesignRelaxed Rattus norvegicus 81 MGC105649 ENSRNOG00000050251 ENSRNOT00000073569 2 1 1 95 3 114773050 114773912 CCGACGTGGTTATTGATCG 59 114775247 114775265 TCCATTCCTGGTTGATGGT 59 NA Rattus norvegicus 81 Hspb2 ENSRNOG00000010402 ENSRNOT00000013960 3 1 1 66 8 55177752 55177770 GAATTTGCCAACCCTAGCC 59 55177281 55177299 GGATCTCTTCTGGCAGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Olr633 ENSRNOG00000049129 ENSRNOT00000040604 3 1 1 60 3 76751997 76752017 TAATGAGCCAACGTATCTGTG 58 76752039 76752057 TGGATACAAGACCCTACCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC365828 ENSRNOG00000047434 ENSRNOT00000074913 2 1 1 60 2 178868526 178868546 AAGACTGGTCATCCTAGCC 59 178868567 178868588 GATATCCACAGGAATCACTGTC 59 NA DesignNoJunction Rattus norvegicus 81 Iqcf6 ENSRNOG00000042065 ENSRNOT00000068240 2 1 1 101 8 115328553 115328572 CTAAAGACCAAGGCCATGGA 60 115328632 115329192 GGCTGTCTTCTCTAACTTTACAC 59 NA Rattus norvegicus 81 Cdkl2 ENSRNOG00000002506 ENSRNOT00000050038,ENSRNOT00000079304,ENSRNOT00000046771 1 3 3 80 14 17553202 17553222 ACAATCTTTCTGCAGTTGCTC 60 17553261 17553791 TCTCGTCCACTCTGTAATTCTG 60 NA Rattus norvegicus 81 Gid4 ENSRNOG00000003847 ENSRNOT00000005237 2 1 1 80 10 46791430 46798898 CCTTACAGAGGAATATCCAACC 58 46798938 46798957 TTCCGAGTTAAGAAAGGGTG 58 NA Rattus norvegicus 81 Car11 ENSRNOG00000021017 ENSRNOT00000028540 3 1 1 81 1 101685606 101685755 CTCTTTGTCAACGTGGCTG 60 101685796 101685818 TGTAGGAGATTCGGGTAATAGTG 59 NA Rattus norvegicus 81 Hoxb5 ENSRNOG00000008010 ENSRNOT00000010724 2 1 1 84 10 84152824 84153517 TCAGCCACGATATGACTGG 59 84153565 84153583 AATTCCTTCTCCAGCTCCA 58 NA Rattus norvegicus 81 Gp2 ENSRNOG00000015716 ENSRNOT00000092022,ENSRNOT00000021249 2 2 2 80 1 189171375 189173015 CAGTGTCAACCATCTTGCT 58 189171313 189171332 TCCTATATCCAGAACCCGAG 58 NA Rattus norvegicus 81 Mrc2 ENSRNOG00000006548 ENSRNOT00000055137 1 1 1 80 10 93566151 93566171 CAAGTGATCTACAGTGATGCC 59 93566213 93566602 CTGCTCAAACCTGTTGGTG 59 NA Rattus norvegicus 81 Megf11 ENSRNOG00000010634 ENSRNOT00000050649,ENSRNOT00000037941,ENSRNOT00000058007,ENSRNOT00000082401 1 4 4 80 8 70129677 70136466 GAGAACACTATCAGCTGCC 58 70136510 70136528 GGACTCATTGCAGTAGTGG 58 NA Rattus norvegicus 81 Il15ra ENSRNOG00000018706 ENSRNOT00000025252 3 1 1 82 17 70466275 70467726 CAACCTCAAGTGTATCAGAGAC 59 70466214 70466232 GTTGTGAGGTCACCTTTGG 59 NA Rattus norvegicus 81 Fgfr1op ENSRNOG00000055093 ENSRNOT00000085501 3 1 1 80 1 53124294 53126536 GTGACAAACTCGATGACCT 58 53124232 53124253 ATGCAACATCTTCCAGATAGTC 58 NA Rattus norvegicus 81 Vom1r7 ENSRNOG00000061043 ENSRNOT00000091192 3 1 1 60 1 60088116 60088136 GCCAGATGTATGTCCATAAGC 59 60088076 60088097 TGATGGTGATTGCTTGAAAGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07053185.1 ENSRNOG00000004787 ENSRNOT00000006385 2 1 1 80 3 95856526 95856544 ACCAATCACAGTCTACGCA 59 95850760 95854226 TTATAGTCACTATGCCTACAGACAG 60 NA Rattus norvegicus 81 Arl5c ENSRNOG00000036880 ENSRNOT00000082427,ENSRNOT00000037318 2 2 2 80 10 85944796 85944818 ATAGATAGTACTGACCGGAATCG 59 85943762 85944756 ATCCTGAAGTGCCTCATGG 60 NA Rattus norvegicus 81 Tas2r129 ENSRNOG00000031107 ENSRNOT00000051110 1 1 1 60 4 167024571 167024590 CTCATGTGTCTTGATCTGGG 58 167024530 167024549 CCACAACACAGAAAGAAAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 l7Rn6 ENSRNOG00000017383 ENSRNOT00000089014,ENSRNOT00000023468 3 2 2 80 1 154152103 154165291 TCTTAAATCTGGAGAAGGAAGC 58 154152044 154152062 ATTCCAATCTGGGCAACAG 58 NA Rattus norvegicus 81 RGD1307461 ENSRNOG00000015718 ENSRNOT00000084120,ENSRNOT00000021188 3 2 2 86 8 116100626 116101239 AAGAGGCTGGAGAAGTTACG 60 116101288 116101306 TAGTTCCTGCTCCAGTTCG 59 NA DesignNoJunction Rattus norvegicus 81 Vipas39 ENSRNOG00000049223 ENSRNOT00000079373,ENSRNOT00000073428 3 2 2 80 6 111273532 111273947 ATGTTGTCATTGATACTTGCCG 60 111273473 111273496 CAGATCCTTTATCTACTTTGCTCC 59 NA Rattus norvegicus 81 RGD1561699 ENSRNOG00000047839 ENSRNOT00000068306 1 1 1 84 14 15424607 15425380 AATCAAGTCCTAGGGTGCC 59 15424541 15424561 GGGAATCCAAGTCTTTCTGTG 59 NA Rattus norvegicus 81 Mir3565 ENSRNOG00000035486 ENSRNOT00000053609 1 1 1 66 14 66923130 66923148 TACTCATACCTCGCAAGCA 59 66923177 66923196 TGTAGTGATAACGTAGCGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Styx ENSRNOG00000007956 ENSRNOT00000010612 2 1 1 80 15 19714477 19714497 TACAGATGATGTCACCACTCC 59 19714534 19717393 CATATGTTCTCTTCACACTACCTG 59 NA Rattus norvegicus 81 Ric8b ENSRNOG00000007323 ENSRNOT00000009625,ENSRNOT00000090153 1 2 2 80 7 25972147 25980642 CTCAAAGATCAGGTGTTACCAC 59 25980682 25980701 CACCAGCTTATTTCTCACGG 59 NA Rattus norvegicus 81 Gpr39 ENSRNOG00000021586 ENSRNOT00000038811 1 1 1 60 13 42009454 42009473 TCCAATATGTCCATCTGCAC 58 42009496 42009514 AGATGCTGGACTGGAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tle6 ENSRNOG00000006350 ENSRNOT00000008360 1 1 1 80 7 10983880 10983898 AGAAGACATCAGTGAGCCC 59 10984019 10984619 TCCCAGAACAAGGGATTCAG 60 NA Rattus norvegicus 81 RT1-O1 ENSRNOG00000032664 ENSRNOT00000048036 1 1 1 118 20 3162200 3162218 TGGAACCTTCCAGAAGTGG 59 3162300 3162449 GATGGAGGAGCCATCTCAG 59 NA Rattus norvegicus 81 Slitrk1 ENSRNOG00000009209 ENSRNOT00000012195 1 1 1 60 15 93306402 93306420 GCTTGCATGAAATCGTTCC 58 93306360 93306378 ATATGCAGTCGTTTCACCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ska1 ENSRNOG00000015275 ENSRNOT00000020637 3 1 1 80 18 70179529 70179550 TGTGGAACATCTCAAAGAACAC 59 70177140 70179490 AGATCTGGCTTATGAGTCGAG 59 NA Rattus norvegicus 81 Rpn1 ENSRNOG00000046345 ENSRNOT00000073429 2 1 1 80 4 120009852 120009870 TCTTTGGAGGGTGGAAGAC 59 120009911 120013747 ACTGGTCACCCAGATTATAGAG 59 NA Rattus norvegicus 81 Med10 ENSRNOG00000017150 ENSRNOT00000023161 3 1 1 90 1 36112807 36112825 AGTTCGTGGAGAACATTCG 58 36111177 36112753 ATGAAGTTCAGCTTCTGGC 58 NA Rattus norvegicus 81 Rn60_20_0028.1 ENSRNOG00000059667 ENSRNOT00000087688 1 1 1 60 20 2791213 2791231 CCTTCTCTGGGACTCTCCT 60 2791171 2791191 ACAGTCATCGAGACATTTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nip7 ENSRNOG00000020391 ENSRNOT00000027653 2 1 1 80 19 39258087 39258106 GGAAAGTTTACCAAGACCCA 58 39258147 39258754 CACTTTATACTTGGCGTAGGG 59 NA Rattus norvegicus 81 Lpl ENSRNOG00000012181 ENSRNOT00000016543 3 1 1 80 16 22554699 22554718 GACTCTGTGTCTAACTGCCA 60 22550648 22554657 ATACATTCCTGTCACCGTCC 60 NA Rattus norvegicus 81 Pcyt2 ENSRNOG00000036684 ENSRNOT00000054952 1 1 1 80 10 109789915 109789934 GTACAAGGGCAAGAACTACC 58 109789665 109789872 ACTTCTGAAACATACCGGC 58 NA Rattus norvegicus 81 Csrp3 ENSRNOG00000014327 ENSRNOT00000019311,ENSRNOT00000092211 2 2 2 82 1 104151376 104152939 CCTGCAGTTCCAACAATCC 59 104151312 104151331 ATTCTCCAAACTTCGCAGAG 58 NA Rattus norvegicus 81 Galnt16 ENSRNOG00000004589 ENSRNOT00000006460 2 1 1 80 6 104243926 104243945 CCTCCACCTTAATGTCTTCC 58 104243988 104248028 TTCTCCATTTCTGCTTGCC 59 NA Rattus norvegicus 81 LOC100909594 ENSRNOG00000046558 ENSRNOT00000074363 2 1 1 61 3 159095919 159095937 TAGTGACAGGAGCCATTGG 59 159096421 159096440 GACAACTTCTTCCGACTGTG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100912571 ENSRNOG00000049598 ENSRNOT00000075306 2 1 1 80 11 82890044 82890299 CTGGATAGAGGCCAACCTG 60 82889982 82890005 GAATAACAGACAGTTGTCATGAGG 60 NA Rattus norvegicus 81 LOC100912571 ENSRNOG00000049598 ENSRNOT00000075306 3 1 1 80 11 82891875 82892038 GAGAGCTCTTTAGGGAAATTACG 59 82891817 82891835 AGAGACCCAGGATCTCCAG 60 NA Rattus norvegicus 81 AABR07055827.1 ENSRNOG00000059620 ENSRNOT00000091611 3 1 1 94 7 10629668 10629689 ATGACCTTGTCACCGAGAG 59 10629747 10629765 TGCTTCTTCACCCATCAGG 60 NA Rattus norvegicus 81 LOC100912365 ENSRNOG00000004066 ENSRNOT00000005407 1 1 1 60 13 104283498 104283518 GAACTTTGTCCATCAGAGGAG 59 104283458 104283476 TTCCCACTTCTCTTCAGCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07005506.1 ENSRNOG00000025122 ENSRNOT00000036330 1 1 1 80 1 183630559 183630580 CCTTCAATGATACGTTTGTCCA 59 183630484 183630521 GAGAGGACTCATCTTCATTCCA 59 NA Rattus norvegicus 81 Uso1 ENSRNOG00000002301 ENSRNOT00000003277 2 1 1 80 14 17424152 17424174 CGTAGCTTCATCTACTTTACTGG 59 17423785 17424114 TCCAAGCGGTATTTCTTAGAC 58 NA Rattus norvegicus 81 Inpp4b ENSRNOG00000018382 ENSRNOT00000024981,ENSRNOT00000025013 3 2 2 80 19 29732975 29743763 CTCACCTGAAAGATGCTCTC 58 29732914 29732933 GACCACCATTCTTGAATCCC 59 NA Rattus norvegicus 81 Rps6ka2 ENSRNOG00000013194 ENSRNOT00000017809 2 1 1 80 1 53465880 53471335 GACTGGAATAAGCTGTATCGC 59 53471376 53471395 AAAGTGGAAGGTGTCCTCAG 60 NA Rattus norvegicus 81 Nfe2l1 ENSRNOG00000008830 ENSRNOT00000067542 2 1 1 80 10 84689834 84690541 AAATGCAGGCTATGGAAGTG 59 84689773 84689791 AGTTGGTGGTAAGAGGGTC 59 NA Rattus norvegicus 81 Rassf1 ENSRNOG00000021548 ENSRNOT00000037375,ENSRNOT00000037363 3 2 2 83 8 116314189 116314212 ATTCATGGTAGTAGATGATCCTCG 60 116314249 116314405 GACAGTTTCCGGAAGTATATTTGG 60 NA Rattus norvegicus 81 Lmo4 ENSRNOG00000009205 ENSRNOT00000077221,ENSRNOT00000067502,ENSRNOT00000088618,ENSRNOT00000082132 2 4 4 75 2 250224218 250224596 CAACGTGTATCATCTCAAGTG 57 250224163 250224181 GTAGTGAAACCGATCTCCC 57 NA DesignNoJunction Rattus norvegicus 81 Klhl21 ENSRNOG00000003334 ENSRNOT00000004508 2 1 1 80 5 169185232 169186874 TACTTCGTCAGGGATGACTC 59 169186914 169186935 GTTCATAGATGGGATCTTGTCC 58 NA Rattus norvegicus 81 Eml6 ENSRNOG00000037462 ENSRNOT00000056706 2 1 1 80 14 114300307 114300325 TTCAGCCCAGATGGATCTC 59 114297596 114300266 TTCTGTCATATCTCTGACTCGG 59 NA Rattus norvegicus 81 Sesn3 ENSRNOG00000008173 ENSRNOT00000011008 1 1 1 80 8 12861022 12862374 ACTTTGGGATTGTGGACTC 57 12862418 12862436 CATCTTCCCTGTCTTCCTG 57 NA Rattus norvegicus 81 Kitlg ENSRNOG00000005386 ENSRNOT00000007231 3 1 3 89 7 42331550 42337817 GTCCTGAGAAAGGGAAAGC 58 42337869 42337888 TTACAAGCGAAATGAGAGCC 59 NA Rattus norvegicus 81 Rpl18a ENSRNOG00000018795 ENSRNOT00000025421 3 1 1 80 16 20294465 20294483 GTACTTTGTGTCGCAGCTG 60 20294526 20294636 GGTGACTTCTCAAACACCTG 59 NA Rattus norvegicus 81 LOC690507 ENSRNOG00000015637 ENSRNOT00000071772 3 1 1 80 3 149809742 149809760 GTCCATAACCATTGCCTCC 58 149809802 149810407 AGGTCATTCATCTGAACAGAG 58 NA Rattus norvegicus 81 Ano3 ENSRNOG00000004731 ENSRNOT00000006349 1 1 1 80 3 101876442 101876689 TCTTCTTCATGATCTCCTTGGT 59 101876383 101876401 ATGCAAACTGCTCCATGAC 59 NA Rattus norvegicus 81 Optn ENSRNOG00000017941 ENSRNOT00000042881,ENSRNOT00000083342,ENSRNOT00000024162,ENSRNOT00000091561,ENSRNOT00000081940,ENSRNOT00000074087 3 6 6 80 17 77201196 77201214 GAGATGAAGCAGACCATCG 58 77201257 77210815 ACAGTACACCTCCATCTGAG 59 NA Rattus norvegicus 81 RGD1566239 ENSRNOG00000019990 ENSRNOT00000063780 1 1 1 126 16 20672610 20673167 CTAGACCAAGCTCACCGTC 60 20673257 20673275 CTTCCACTGCCAGTACCTC 60 NA Rattus norvegicus 81 Sec14l5 ENSRNOG00000002917 ENSRNOT00000061253 2 1 1 81 10 10599526 10599544 GTCTGGGACAGATGGACAC 60 10599385 10599483 TCGTTGACAGAAAGAACATGC 60 NA Rattus norvegicus 81 Kxd1 ENSRNOG00000019971 ENSRNOT00000027053 3 1 1 82 16 20662292 20664683 AGGATCAGGACACTGAAGG 58 20665817 20665835 TCCTCTAGGAGTGAACCCT 59 NA Rattus norvegicus 81 AABR07061336.1 ENSRNOG00000028235 ENSRNOT00000031768 1 1 1 97 4 116933639 116933657 TTGAGGAACCCAGTGTGAG 59 116935916 116935934 CAACTCTGGGTCCATGGAG 60 NA DesignNoJunction Rattus norvegicus 81 RGD1309995 ENSRNOG00000008331 ENSRNOT00000011326 2 1 1 80 7 26316948 26316966 TCCAGAATTTCGAAGGCCA 59 26314914 26316908 TCTACAAAGTTCAGAGTGAGAGG 60 NA Rattus norvegicus 81 Ube2a ENSRNOG00000039985 ENSRNOT00000083861,ENSRNOT00000061455 2 2 2 80 X 123496139 123496159 TACTTCAGAACCGTTGGAGTC 60 123496195 123496536 GATTAGGTTCATCCAATAGAGACTG 59 NA Rattus norvegicus 81 Akr1c2 ENSRNOG00000029844 ENSRNOT00000066282,ENSRNOT00000051342 1 2 2 80 17 69404146 69404165 TGTGAAACTGAACGATGGTC 59 69401977 69404106 GCTTTACTCTTGGGTAACTCTG 59 NA Rattus norvegicus 81 AABR07065012.1 ENSRNOG00000032248 ENSRNOT00000047825 3 1 1 60 6 103948965 103948983 CAGCAGAAGTGGAGGAGAC 60 103948923 103948944 TATCTTCTTGCCATTTCTTCCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Bco1 ENSRNOG00000012027 ENSRNOT00000016880 1 1 1 80 19 49648466 49648485 TTCTATGCCACCACAGAGAC 60 49648527 49650381 CCGGTAATCAACCTTCTCCA 60 NA Rattus norvegicus 81 Arnt ENSRNOG00000031174 ENSRNOT00000064442,ENSRNOT00000044738,ENSRNOT00000091681 3 3 3 80 2 196646171 196646190 GTCAGAAGGTCTCTTTGTGC 59 196646231 196646422 CCTTTACTCTGATCTGCACTG 59 NA Rattus norvegicus 81 Mir101b ENSRNOG00000035532 ENSRNOT00000053655 2 1 1 60 1 247263748 247263767 GGTTATCATGGTACCGATGC 59 247263785 247263808 CATTCTTCAGCTATCACAGTACTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dctn4 ENSRNOG00000019298 ENSRNOT00000026334,ENSRNOT00000026394 1 2 2 80 18 55797272 55797291 CTCTCACAGCTCTACTTCTG 57 55797333 55800017 ATAATGAGAGTCCACCTCGT 58 NA Rattus norvegicus 81 Fgb ENSRNOG00000007092 ENSRNOT00000009813,ENSRNOT00000091155 2 2 4 80 2 182032241 182034920 ACTCCGATAAAGTGGACCT 58 182032179 182032197 GTCTTAGGCTAGGAGGCTC 59 NA Rattus norvegicus 81 Fgb ENSRNOG00000007092 ENSRNOT00000077663 2 1 4 60 2 182034335 182034355 TCATTTGTAGCTCCAATTGGC 59 182034295 182034314 AACAAACAAGTTGAGGCAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 L2hgdh ENSRNOG00000004857 ENSRNOT00000006473 1 1 1 80 6 92033252 92034045 AAGGAAATATTTATCCGGTCCC 58 92033193 92033211 AAATAGAGCCATCCAGCCT 59 NA Rattus norvegicus 81 L2hgdh ENSRNOG00000004857 ENSRNOT00000006473 2 1 1 80 6 92033251 92034043 GGAAATATTTATCCGGTCCCG 59 92033191 92033209 CCAAATAGAGCCATCCAGC 58 NA Rattus norvegicus 81 Mysm1 ENSRNOG00000026299 ENSRNOT00000039554 1 1 1 80 5 113921070 113921092 GGGATGTTAATTGTATTGGACGG 60 113919809 113921030 ATATGGCCTGCTCACATCC 60 NA Rattus norvegicus 81 Capn5 ENSRNOG00000014251 ENSRNOT00000019370,ENSRNOT00000083055 1 2 2 80 1 163081076 163082902 ATGGTGAATTCTGGATGACCT 59 163081016 163081035 AGGACGTATTAATCAGGCGG 60 NA Rattus norvegicus 81 Scaf1 ENSRNOG00000056946 ENSRNOT00000081430 3 1 1 81 1 100998376 100999844 GGGACACTGACAAGTATCTG 58 100998314 100998332 TAGTATGGCTTGATGGCCA 59 NA Rattus norvegicus 81 Cipc ENSRNOG00000011111 ENSRNOT00000014980 3 1 1 147 6 110975754 110975773 GAGGAAAGTCCCATCGAGAG 60 110975882 110985834 ACATTCTGAGCTCCCATCTG 60 NA Rattus norvegicus 81 Alb ENSRNOG00000002911 ENSRNOT00000003921 2 1 1 80 14 19182293 19182313 AAATATGAAGCCACACTGGAG 58 19181163 19182252 CTGAAATTCTGCAAGCACTG 58 NA Rattus norvegicus 81 Gdpd1 ENSRNOG00000060561 ENSRNOT00000088182 1 1 1 80 10 74358130 74360803 TCTCAAATACTGTGAGCTCC 57 74346952 74346970 TCTGTTCCTTCACACTTGC 58 NA Rattus norvegicus 81 Liph ENSRNOG00000047894 ENSRNOT00000077119,ENSRNOT00000075512 3 2 2 80 11 82694923 82695708 GTTGTCTGACGGAAGTCAC 59 82696363 82696383 TGGGATCTAATCTGTCCTCAG 59 NA Rattus norvegicus 81 Olr1624 ENSRNOG00000045711 ENSRNOT00000041733 1 1 1 60 15 26780668 26780687 TTACAAAGCCTGCATCACTC 59 26780627 26780645 AAACATTTCTCCCGCTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncf1 ENSRNOG00000001480 ENSRNOT00000002028,ENSRNOT00000076916 2 2 2 80 12 25500930 25500948 CTGCATCCTATTTGGAGCC 58 25500992 25502890 TTACATACGGTTCACCTGC 58 NA Rattus norvegicus 81 RGD1565059 ENSRNOG00000021324 ENSRNOT00000086472 2 1 1 84 2 154491171 154505260 CATGGAAACAAGAGCCGTG 60 154491105 154491124 TTCTGTAGCCACACCTTACC 60 NA Rattus norvegicus 81 Ldhc ENSRNOG00000013103 ENSRNOT00000017851,ENSRNOT00000079440,ENSRNOT00000083079,ENSRNOT00000088892 2 4 7 80 1 102930430 102930448 CTGTGACTGATATCGCTGC 59 102930490 102931619 CATATAAGCCCTTAACCAGCG 59 NA Rattus norvegicus 81 Mthfd2l ENSRNOG00000021347 ENSRNOT00000081455,ENSRNOT00000047708 1 2 2 80 14 18703193 18703213 TTTAGTGGGAGATAACCCAGC 60 18702204 18703151 TCACTGCAGATGCCTACAG 60 NA Rattus norvegicus 81 Asic3 ENSRNOG00000008380 ENSRNOT00000011300 1 1 1 80 4 7292411 7292430 CTTGAGGACATGTTGTTGGA 58 7291145 7292371 CATTCGAGTAAAGATCACTGTG 57 NA Rattus norvegicus 81 Ctrl ENSRNOG00000019353 ENSRNOT00000026361 3 1 1 83 19 37907062 37907080 CTGAGCTACAACCAGAGGA 58 37906908 37907015 GGTGTTATCCTGCAGAGAC 58 NA Rattus norvegicus 81 Slc29a4 ENSRNOG00000001115 ENSRNOT00000001477 3 1 1 82 12 13922825 13923466 CTAGGATCACCACAGGTTACC 60 13922763 13922781 AGAGAAGAGCTGAAGCCAC 59 NA Rattus norvegicus 81 Npffr2 ENSRNOG00000003067 ENSRNOT00000004153 3 1 1 82 14 20149784 20153981 ATAGCCGTGGACAGATTCC 59 20149720 20149739 ATCACGATCATGACAAAGGC 59 NA Rattus norvegicus 81 Sfmbt1 ENSRNOG00000016645 ENSRNOT00000022865,ENSRNOT00000084713 2 2 2 80 16 6877765 6877784 TGAAGAAGTGAGCATAGCCA 59 6877825 6878778 ACAGGCTTCTTAGAACCTTCC 60 NA Rattus norvegicus 81 Tc2n ENSRNOG00000004754 ENSRNOT00000006371 3 1 1 80 6 125553487 125568136 ATTCATCCAGAGACATGACTC 57 125553427 125553445 CTTCTGTTACTGCCCTGAG 58 NA Rattus norvegicus 81 Med21 ENSRNOG00000001820 ENSRNOT00000002500 3 1 1 93 4 180966265 180966956 TACAGAAGAGTATGCCCAGC 59 180967011 180967030 AGACTCTTCACTGGGTAAGG 59 NA Rattus norvegicus 81 Mis12 ENSRNOG00000007725 ENSRNOT00000010144 2 1 1 60 10 57660368 57660388 AAGATAAGTGTCAGGAGACGA 58 57660410 57660428 TCCTGTTTGAGAAGCTGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1559588 ENSRNOG00000049331 ENSRNOT00000072303 3 1 1 80 12 19714488 19714508 CACTTCCTGAACAGAATCTGG 59 19714550 19714863 CTGAATTCCCAGTGTGCAG 59 NA Rattus norvegicus 81 Col4a5 ENSRNOG00000018951 ENSRNOT00000064478 2 1 1 80 X 112981216 112982563 CATGTTCAGTAAACCTCAGTCAG 60 112982601 112982621 TTCATGCATACTTGACATCGG 59 NA Rattus norvegicus 81 Fpr-rs4 ENSRNOG00000043056 ENSRNOT00000066769 2 1 1 60 1 86073827 86073845 ATGGTCTCAGAATCACCGA 58 86073869 86073887 TATCCAAGCTCCAACAACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lpo ENSRNOG00000008422 ENSRNOT00000011402 2 1 1 80 10 75110753 75110774 GGACTGATAACTACACCAAAGC 59 75109311 75110712 CAGTTGGGAACATGATGGG 59 NA Rattus norvegicus 81 Muc1 ENSRNOG00000020539 ENSRNOT00000027850 2 1 1 80 2 188545751 188545769 AAGTGAAGTCACAGCTCGT 59 188545811 188545941 TCTCATTCACATTGACTTCCG 59 NA Rattus norvegicus 81 Rfc5 ENSRNOG00000001134 ENSRNOT00000084747 2 1 2 81 12 44932747 44933927 GAGTACCATTCAGAAGTTCATCAG 59 44933967 44933985 GGATGTCTTTCCTGTGCCT 60 NA Rattus norvegicus 81 Hnrnpc ENSRNOG00000011621 ENSRNOT00000090378,ENSRNOT00000060514 2 2 2 82 15 28487483 28487501 AGATGACTCTGCTGAGGAG 58 28487314 28487437 CATCCTTCAACTCCAGCTG 58 NA Rattus norvegicus 81 RGD1565904 ENSRNOG00000049116 ENSRNOT00000073735 3 1 1 80 11 83881073 83881177 TTACCCTGTAGACTTAGGTGAC 59 83881014 83881033 TCACCATCATCCAAGGTACC 59 NA Rattus norvegicus 81 LOC100359960 ENSRNOG00000033244 ENSRNOT00000060074 1 1 1 60 8 43480643 43480694 GGGTAAAGCTGAAGACAAGG 59 43480602 43480620 GTCCTTAACCAGGTGACCC 60 NA DesignNoJunction Rattus norvegicus 81 Rab33a ENSRNOG00000006698 ENSRNOT00000008868 3 1 1 80 X 135349198 135359628 GCGAGAAGATCAAGGTTCAG 59 135359670 135359689 TGCGGTAATAATGCTCAACC 59 NA Rattus norvegicus 81 Klhl20 ENSRNOG00000002875 ENSRNOT00000076070,ENSRNOT00000003851 3 2 3 81 13 78928337 78928355 TAGTCCCAAGTTCCTGGTG 59 78925972 78928294 CTCATCTACCAAGTCTCTGCA 59 NA Rattus norvegicus 81 Cct4 ENSRNOG00000009642 ENSRNOT00000012847 1 1 1 80 14 107771105 107771126 GTGACCATTACCAATGATGGTG 60 107771167 107771627 CAGTTCCACCAGCATTCTG 59 NA Rattus norvegicus 81 Cct4 ENSRNOG00000009642 ENSRNOT00000012847 2 1 1 80 14 107771714 107772400 TCTGCAGAAAGGTATACATCCA 59 107772439 107772459 TCGGTAAGGATTTCAAGACCC 60 NA Rattus norvegicus 81 AABR07009508.1 ENSRNOG00000021867 ENSRNOT00000032342 2 1 1 83 2 100955162 100955180 ACGACTACAGTTGCAAGGT 59 100955227 100955566 GGATGTCCATGGAAGGAGG 60 NA Rattus norvegicus 81 Tardbp ENSRNOG00000012455 ENSRNOT00000049822 3 1 1 80 5 165434733 165436234 AATTCTAAGCAAAGCCCAGAC 59 165434673 165434692 TTCAGCAGTCATGTCCTCTG 60 NA Rattus norvegicus 81 Nfam1 ENSRNOG00000022975 ENSRNOT00000037681 2 1 1 81 7 123871938 123871956 CACTGCTAAGACATGCCCT 60 123861010 123871894 CTGTAGGGACGTGTAGATGG 59 NA Rattus norvegicus 81 Pcyt1a ENSRNOG00000001762 ENSRNOT00000002403 1 1 1 80 11 71559317 71559335 GTTACGTAGACGAGGTGGT 59 71556629 71559273 CGACGAAATCAATCCGGTG 59 NA Rattus norvegicus 81 Acmsd ENSRNOG00000003884 ENSRNOT00000005206 2 1 1 80 13 44459728 44468286 TAGGGAAGGATAGAGTTATTCTGG 59 44468322 44468343 TAGACTCTATCAACTTCCCAGG 59 NA Rattus norvegicus 81 Ap5m1 ENSRNOG00000014148 ENSRNOT00000018972 2 1 1 81 15 25947093 25947111 AACTACACGAAAGTGTGCG 59 25947154 25947618 AAATGGGTAATTGGACCTCTG 58 NA Rattus norvegicus 81 Syn2 ENSRNOG00000008157 ENSRNOT00000011292 2 1 1 80 4 147174804 147174822 CAGCTATTGTCCAGGACTC 57 147174864 147187423 TTCCTTAAGTGTTCCACTCTG 58 NA Rattus norvegicus 81 RGD1562987 ENSRNOG00000018676 ENSRNOT00000025198 1 1 1 106 18 70982165 70982185 CCTGGAGCCATACATATACCC 60 70982253 70982736 TATCTGCACCCTTGCAGTC 60 NA Rattus norvegicus 81 LOC100912059 ENSRNOG00000029046 ENSRNOT00000042095 1 1 1 60 12 10966577 10966600 CGGATGAAAGTTAAGAAACTACCC 60 10966413 10966432 ACTTAAACCTCTTCAGGTGC 58 NA DesignNoJunction Rattus norvegicus 81 Mir199a2 ENSRNOG00000029459 ENSRNOT00000044190 1 1 1 60 13 80125627 80125646 TGTTTCCAAGGAGAGGACAG 59 80125666 80125687 AGAGAAACACTGGATATGAGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lmtk2 ENSRNOG00000025155 ENSRNOT00000046381 1 1 1 80 12 12432368 12432386 TGTTATCTCACCTCCGACC 59 12430356 12432330 CTCTATGTAATCCTCCTTGTATCTG 58 NA Rattus norvegicus 81 Olr1231 ENSRNOG00000029086 ENSRNOT00000044223 1 1 1 60 4 1471283 1471303 ACCAGCACTTATGTCAATGAG 58 1471323 1471343 GGACTGTGATGTTAATACCCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Odf2l ENSRNOG00000014059 ENSRNOT00000018905,ENSRNOT00000080600 1 2 2 80 2 251011314 251011332 AAAGTGTACAGACAGAGGC 57 251011376 251017724 CTTGGCTTCCTGATCTCTG 58 NA Rattus norvegicus 81 Olr799 ENSRNOG00000012214 ENSRNOT00000059651 2 1 1 60 4 68805436 68805454 ATGTGAAACCCAAGCAGAC 58 68805475 68805496 GAAATCATCAAGGAAACTACCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Impa2 ENSRNOG00000018516 ENSRNOT00000025147,ENSRNOT00000081432,ENSRNOT00000085655 1 3 3 80 18 63036455 63039322 ACTTTGTGCACAGATTCCC 58 63040959 63040978 GGTGAATCACTCCGAATTCC 59 NA Rattus norvegicus 81 Rn60_4_2163.2 ENSRNOG00000042507 ENSRNOT00000034180 1 1 1 60 4 150301920 150301938 CCTGAAGCGTTTACTGCTG 59 150301878 150301897 AGTTTCTCAATCAGGTCCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc29a3 ENSRNOG00000000568 ENSRNOT00000000689 3 1 1 80 20 30324050 30324070 TTTAAACTCCGAAACTGCTCC 59 30304870 30324011 GTAGCTCTCAAAGTAGTTCAGG 58 NA Rattus norvegicus 81 Cyp7b1 ENSRNOG00000009730 ENSRNOT00000013116,ENSRNOT00000082084 2 2 2 80 2 102726667 102726685 ATTGTTCAGGAGAGGCAGG 59 102726140 102726624 CAAGCCAAGATGATGTGCTC 60 NA Rattus norvegicus 81 Dhodh ENSRNOG00000015063 ENSRNOT00000066733 2 1 1 81 19 42068662 42070749 CTCTGACATGCTGGAAGTG 58 42070794 42070812 GCCGTTCTTGTCAAATCCT 59 NA Rattus norvegicus 81 Tm7sf2 ENSRNOG00000020989 ENSRNOT00000028485 1 1 1 80 1 221426996 221427014 TTCCTGTTGTACCATCCAC 57 221426732 221426953 GATGTAGTAACCAACAGCCT 57 NA Rattus norvegicus 81 RGD1560242 ENSRNOG00000036615 ENSRNOT00000054776 2 1 1 80 1 241424258 241424277 GATATGGAGGATCCCAAGGT 58 241397980 241424216 TACCCATCTTGGACTGTCAG 59 NA Rattus norvegicus 81 Pald1 ENSRNOG00000000561 ENSRNOT00000066794,ENSRNOT00000065614 3 2 2 92 20 30942726 30942744 TAATGCCTACCTTCGCCTG 60 30940667 30940686 TCATAGATGCCAGCTTTGGT 60 NA DesignNoJunction Rattus norvegicus 81 Mettl17 ENSRNOG00000025512 ENSRNOT00000064907 2 1 1 80 15 28293495 28293513 ATTGTCACCTCTGTTGTCC 57 28293557 28293655 AGCGATATAAATCCCTGCC 57 NA Rattus norvegicus 81 Adnp2 ENSRNOG00000053370 ENSRNOT00000078496 1 1 1 80 18 76647868 76652551 GCTGCTGAAGGATCTTAAAGG 59 76647808 76647828 TCCCAAAGAGAAACATCTCCC 60 NA Rattus norvegicus 81 Pcmtd2 ENSRNOG00000017404 ENSRNOT00000023989 3 1 1 88 3 177361119 177361139 GTGCAGAAAGAACATGAAGAG 58 177361187 177365761 ATCTTGGTCAACTTCTCTTCC 58 NA Rattus norvegicus 81 Lonrf3 ENSRNOG00000013092 ENSRNOT00000089266,ENSRNOT00000017550 2 2 2 80 X 122952626 122952645 ACCGGATCTCAGTATTCCAC 59 122952683 122960247 GGCTCATAGAACAATCTCATACAC 60 NA Rattus norvegicus 81 RGD1561137 ENSRNOG00000030143 ENSRNOT00000043621 2 1 1 60 3 21984036 21984056 CAGTACAAGTTACTGGAGCCT 60 21984077 21984096 TATCCACACCAGCAAGTCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r49 ENSRNOG00000050887 ENSRNOT00000046111 3 1 1 60 1 67660741 67660760 AATCAGCCCTAATCACTCCA 59 67660780 67660801 ACCAATGTACTTGATGACTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Grm8 ENSRNOG00000021468 ENSRNOT00000075324 3 1 2 102 4 55398566 55398584 TCTGTGTCCATCATGGTGG 59 55398220 55398502 CTATGGTTGTCAAGATTGCCG 60 NA Rattus norvegicus 81 Mrpl54 ENSRNOG00000020464 ENSRNOT00000027737 3 1 1 109 7 11322225 11323283 CTCTGAGTACCCGACATGG 59 11323356 11323374 TGTTCTGTTTGCGAAGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Apba3 ENSRNOG00000020466 ENSRNOT00000027784 3 1 1 80 7 11314689 11314795 ACAGAGACAAGAGAAATCCAC 58 11314629 11314648 GTATACTGGCTGTTCCTGTC 58 NA Rattus norvegicus 81 AABR07042616.1 ENSRNOG00000050034 ENSRNOT00000044037 2 1 1 80 19 341838 342490 TAACTTCTATCGCAACCTGCA 60 341778 341796 TCCTGCTTCAATGTGACCA 59 NA Rattus norvegicus 81 Dmrtc1c1 ENSRNOG00000037923 ENSRNOT00000057644,ENSRNOT00000076215 1 2 2 80 X 72686384 72686544 CAAGTCAGGGAACAAGGAG 58 72686588 72686606 CTGGCGTCTCTTTATTGGT 58 NA Rattus norvegicus 81 RGD1564379 ENSRNOG00000042501 ENSRNOT00000064861 1 1 1 60 3 3592660 3592680 ACCAAGTACAACAACTTCGAC 59 3592620 3592638 AGCGGATAAAGCCGTAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tob2 ENSRNOG00000050500 ENSRNOT00000071998 1 1 1 255 7 123088213 123088231 AATCACATGAGCTCGGTCC 60 123081541 123081559 ACTTTGATCTCCAGCTGCA 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gk2 ENSRNOG00000029397 ENSRNOT00000044244 2 1 1 60 14 13751619 13751638 CTATACAATGCCGTGGTGTG 59 13751657 13751679 TATTGAGACTCTCCACAGTAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1563780 ENSRNOG00000048565 ENSRNOT00000074218 2 1 1 83 15 29349564 29349756 GATTTGCTGGGTGAGAGGA 59 29349499 29349518 CATCTCAGAGCAGGATTGGT 60 NA Rattus norvegicus 81 MGC114427 ENSRNOG00000023016 ENSRNOT00000037881 2 1 1 99 X 147494728 147495263 ACATCAGTGTGAAGGTTTGTG 59 147495324 147495342 GCTGTTGTCAGTAGGTTCC 58 NA InUTR Rattus norvegicus 81 Olr789 ENSRNOG00000048999 ENSRNOT00000071479 2 1 1 60 3 103344588 103344607 CACATCTCTGTTGTGGTCCT 60 103344547 103344565 GCGAAGGCCATGTATAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nt5c2 ENSRNOG00000020179 ENSRNOT00000027351 2 1 1 80 1 266668766 266669718 TCCCAGATATACCAGTTGTGAC 59 266668707 266668729 CTTACATCCTGGAACATACTCCT 60 NA Rattus norvegicus 81 LOC102551504 ENSRNOG00000049274 ENSRNOT00000052217 3 1 1 60 1 67917881 67917900 AATCAGCCCTAATCACTCCA 59 67917920 67917941 ACCAATGTACTTGATGACTCTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lgmn ENSRNOG00000007089 ENSRNOT00000010101 2 1 1 80 6 126292051 126292845 AAAGTCTTGAAGAGTGGGC 58 126291989 126292007 AGGAAACACCAGGATTCCA 59 NA Rattus norvegicus 81 Plau ENSRNOG00000010516 ENSRNOT00000014273 3 1 1 80 15 3647114 3647632 CATAATGACATAGCCTTGCTG 57 3647054 3647072 GCAGATGGTCTGTATGGTC 58 NA Rattus norvegicus 81 Hacd1 ENSRNOG00000043192 ENSRNOT00000063911 2 1 1 80 17 81187413 81187602 TTTGCTTGAGGTAGTCCAC 57 81187275 81187294 ATTCGTGAACTCACTTGGAC 58 NA Rattus norvegicus 81 Olfml1 ENSRNOG00000056562 ENSRNOT00000081351 1 1 1 89 1 171797728 171797746 GAGGAGAAGACATCAGCTG 57 171797799 171815887 CATGTTGTCACAGCTTGTG 58 NA Rattus norvegicus 81 Mre11a ENSRNOG00000009506 ENSRNOT00000012940 2 1 1 80 8 13319115 13319134 GCTCTTCTATGTGTCTCAGC 58 13319176 13321322 AGGCCTACATGTTTCTTCAC 58 NA Rattus norvegicus 81 AABR07017735.1 ENSRNOG00000049065 ENSRNOT00000071797 1 1 1 80 15 30430017 30430209 AGATTTGCTGGGTGAGAGG 59 30430253 30430271 TCAGAGCAGGATTGGTTCC 59 NA Rattus norvegicus 81 AABR07017735.1 ENSRNOG00000049065 ENSRNOT00000071797 2 1 1 83 15 30430018 30430210 GATTTGCTGGGTGAGAGGA 59 30430256 30430275 CATCTCAGAGCAGGATTGGT 60 NA Rattus norvegicus 81 Ovol1 ENSRNOG00000020669 ENSRNOT00000081567,ENSRNOT00000028081 1 2 2 80 1 220929920 220931398 CAAGATGAAGGTGACCTTGG 59 220929859 220929878 TGGTAGGTGAAGGACTTCTG 59 NA Rattus norvegicus 81 Rilp ENSRNOG00000003784 ENSRNOT00000005039 2 1 1 94 10 63661538 63661918 CCAGAATTTCTTTGGCTTATGG 58 63661973 63661991 CTTCTCCTTCCTGTGTCCT 58 NA Rattus norvegicus 81 Atf1 ENSRNOG00000061088 ENSRNOT00000087298 3 1 1 80 7 141889616 141905472 AGTCCATCAGGTGTCATCG 59 141905516 141905534 TGAGCTTTCTGTGAGGAGC 60 NA Rattus norvegicus 81 Rpl27-l1 ENSRNOG00000031517 ENSRNOT00000047308 3 1 1 60 X 68955201 68955219 CCACAAGGTACTCTGTGGA 59 68955159 68955178 CTGAACACATCCTTGTTGAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1304770 ENSRNOG00000042918 ENSRNOT00000066856 1 1 1 81 20 45017629 45020641 GGATACAGGTGCAAATGTCC 59 45017567 45017585 GAAACTGAAGTGCAAGGCC 60 NA Rattus norvegicus 81 Wt1 ENSRNOG00000013074 ENSRNOT00000067940 2 1 1 83 3 95176387 95176405 ACTTCAAGGACTGCGAGAG 59 95176451 95177271 GGAATGGTTTCACACCTGTG 60 NA Rattus norvegicus 81 LOC361346 ENSRNOG00000028677 ENSRNOT00000014670 1 1 1 80 18 68974562 68978062 CCCTGTTACTTTCAAATCTCCT 58 68974503 68974522 TCCTCAAGACACTTTGTCCT 59 NA Rattus norvegicus 81 Zfp709l1 ENSRNOG00000048910 ENSRNOT00000047433 2 1 1 87 7 10430923 10430941 GCTTTGCTGGATCCTTTCC 59 10420357 10430878 CCAATTTGTATCCTATAGCAGTGAG 60 NA Rattus norvegicus 81 Spdye4 ENSRNOG00000058563 ENSRNOT00000080489 1 1 1 80 12 13391086 13392484 CCCAGGACTATCAGAACCA 58 13392528 13392546 GATGACAAGTCCCTCTTCC 57 NA Rattus norvegicus 81 Tekt4 ENSRNOG00000018792 ENSRNOT00000025434 3 1 1 80 10 14832758 14832776 GCCCAAACTCGACTTTACC 59 14832820 14833555 GCTCATCAACCTGAACTGG 59 NA Rattus norvegicus 81 Manba ENSRNOG00000052247 ENSRNOT00000087371 3 1 1 80 2 240695787 240695807 AAGACGTTAGAATCGAAGCCT 60 240695843 240700008 CCTGAGAAGTGTTATCATACAATGG 60 NA Rattus norvegicus 81 Tubd1 ENSRNOG00000053309 ENSRNOT00000081012 2 1 1 80 10 73872415 73872435 AGCTACAAGATCAGTACTCCA 58 73872477 73874989 TCTGAACAATAACCTCGCC 58 NA Rattus norvegicus 81 Nxf2 ENSRNOG00000011729 ENSRNOT00000015806 2 1 1 80 X 105785084 105785212 CAATATCCCTGAACTGTTGTCC 59 105785025 105785046 TTCTCTGTCATGTCAGATAGCC 60 NA Rattus norvegicus 81 Snai3 ENSRNOG00000013586 ENSRNOT00000018387 3 1 1 103 19 55278730 55279906 ACCCATACAGGTGAGAAGC 59 55278645 55278663 TTCTTGGTACCAGCGTGAG 60 NA Rattus norvegicus 81 Dlg2 ENSRNOG00000022635 ENSRNOT00000055401 1 1 1 80 1 156929544 156929562 GTATCCTTCATTCTGGCCG 58 156929604 156969334 ACCATTCACCGATAAGATCTG 58 NA Rattus norvegicus 81 LOC100910921 ENSRNOG00000049438 ENSRNOT00000072853 1 1 1 60 3 75167844 75167865 ACTTCTTCTGTGACATACCTCC 60 75167805 75167826 TCATTCACAAAGATGTTCCCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ift122 ENSRNOG00000010952 ENSRNOT00000086549,ENSRNOT00000014733 3 2 2 80 4 147766455 147766475 CTACGACCTTGCATTTAAACC 58 147766516 147768130 TCAGAGGTGTCATAAACCAG 57 NA Rattus norvegicus 81 Gja1 ENSRNOG00000000805 ENSRNOT00000001054 2 1 1 90 20 37876807 37876827 CGGCTTCACTTTCATTAAGTG 58 37886192 37886210 AGTAGGCTTGGACCTTGTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Gja1 ENSRNOG00000000805 ENSRNOT00000001054 3 1 1 102 20 37876784 37876802 GAGTTCCACCAACTTTGGC 59 37886181 37886199 ACCTTGTCCAGAAGCTTCC 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 LOC691909 ENSRNOG00000053015 ENSRNOT00000078779 1 1 1 80 1 199033816 199033835 CAGACTATGTGGTCAACACC 58 199033662 199033773 ATAGGTCGAGACGAACCTG 59 NA Rattus norvegicus 81 LOC691909 ENSRNOG00000053015 ENSRNOT00000078779 2 1 1 81 1 199033815 199033835 CAGACTATGTGGTCAACACCT 60 199033661 199033773 GATAGGTCGAGACGAACCTG 60 NA Rattus norvegicus 81 RGD1309651 ENSRNOG00000017646 ENSRNOT00000023721 2 1 1 170 19 54187327 54204687 GTCTGAAAGGCTTTAAGATGTG 58 54184987 54187196 CCAACTCATCCATCCAGAC 58 NA Rattus norvegicus 81 Olr43 ENSRNOG00000018514 ENSRNOT00000024971 2 1 1 60 1 167720263 167720281 ATGCCTTCACCTATGTGGA 58 167720305 167720323 GCAATGAAGCGATCAAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912228 ENSRNOG00000046449 ENSRNOT00000074351 1 1 1 84 4 79579183 79579201 CAAGAGATCCAGCCCTGAG 60 79579248 79581020 GTCTTCAAGCCTTGTTCTGG 59 NA Rattus norvegicus 81 Rpl7a ENSRNOG00000049097 ENSRNOT00000006754 3 1 1 89 3 4869034 4869052 ATCATCAAGGGAAAGGCCA 59 4869105 4869336 CTTGTCTTCCGAGTTCACC 58 NA Rattus norvegicus 81 Stap1 ENSRNOG00000002014 ENSRNOT00000002760 1 1 1 80 14 23604730 23604750 CTAAAGATCACTGCTCTACCC 58 23599046 23604689 ATAGTGTTCGTACTCCTGGT 58 NA Rattus norvegicus 81 Bahcc1 ENSRNOG00000043102 ENSRNOT00000066736 2 1 1 80 10 109479465 109479483 GTGGTGAAGGTCAAATGGT 58 109479525 109479696 GTATAGTGCATTCTTCCCGTC 59 NA Rattus norvegicus 81 Nptx2 ENSRNOG00000001006 ENSRNOT00000001331 1 1 1 98 12 12023142 12023160 CTCCACAATGAGACCTCGG 60 12017931 12023080 GAATGCACTGTTGCCTCTC 59 NA Rattus norvegicus 81 Fbxw7 ENSRNOG00000010889 ENSRNOT00000081678 1 1 2 80 2 184242658 184242677 GAAGAGTGCGTACATCAGAC 59 184238603 184242615 CCTTTCAGCACCTTAGGAG 58 NA Rattus norvegicus 81 Ugt2a1 ENSRNOG00000001973 ENSRNOT00000002704,ENSRNOT00000041514 2 2 5 80 14 22193669 22211524 TACAGTAAAGCCTTAGGAAGACC 60 22211562 22211582 CCAATATGTTCGCATTAGCCA 59 NA Rattus norvegicus 81 Plagl1 ENSRNOG00000025587 ENSRNOT00000030329 1 1 1 83 1 7252688 7254751 AAGCTGATGAGACACATGG 58 7254798 7254816 ATCCTTCCGGTTGAAAGTC 58 NA Rattus norvegicus 81 Zswim8 ENSRNOG00000009596 ENSRNOT00000063831 3 1 1 80 15 3769590 3769712 TTATGAGGAAGATGCTGACGA 59 3769530 3769548 TCATCCTCCTCTCCAACTG 58 NA Rattus norvegicus 81 Olr1498 ENSRNOG00000055339 ENSRNOT00000082426 1 1 1 60 10 60542258 60542279 AATCATTCTCCTGGTTCAACTG 59 60542219 60542239 GCTAAGAAACAAGTACATGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1498 ENSRNOG00000055339 ENSRNOT00000082426 3 1 1 60 10 60542175 60542193 TTTCCTCCGTCACAATACC 57 60542133 60542153 GATATAGATGGCACTTGGCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rrnad1 ENSRNOG00000011645 ENSRNOT00000015793 2 1 1 85 2 187296998 187297016 CTAGTAGCGAGAGCTCAGC 60 187296314 187296949 CTTTGCACCATCTTTGGGT 59 NA Rattus norvegicus 81 Cdc42bpg ENSRNOG00000027456 ENSRNOT00000038016 2 1 1 80 1 221676994 221677015 TGTTCTAGTGAAGGGAGATAGC 59 221677055 221677473 ATCACCAGGTACAGGTACTC 58 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000059739,ENSRNOT00000050222,ENSRNOT00000051908,ENSRNOT00000078583,ENSRNOT00000091677,ENSRNOT00000082793,ENSRNOT00000083088 1 7 8 113 6 64854378 64861601 CGTTTGGAGAATATAGTGATGC 57 64861675 64861693 CATAGTCAACCAGGCTGTC 58 NA Rattus norvegicus 81 LOC100912655 ENSRNOG00000047568 ENSRNOT00000072820,ENSRNOT00000071324,ENSRNOT00000042677 1 3 3 80 12 20955543 20956032 AGTGGAGCAACAGATTCCT 59 20955481 20955499 GCTTTCCCTTCCTGAAGAG 58 NA Rattus norvegicus 81 LOC103689929 ENSRNOG00000058333 ENSRNOT00000086076 2 1 1 80 X 123856902 123856920 AATCACTTCATCGGTGCAG 58 123852111 123853448 AAACCAATTCTGAACTCTGGC 59 NA Rattus norvegicus 81 Clca1 ENSRNOG00000060831 ENSRNOT00000084996 3 1 1 83 2 250923591 250923609 ATGGCTATGAAGGCATCGT 59 250918696 250923545 TCACCATGTCCTTTATCCGT 59 NA Rattus norvegicus 81 Nell1 ENSRNOG00000015675 ENSRNOT00000056030 2 1 1 80 1 106209316 106209336 GATCAAAGTGGACAGAAGCTC 59 106209378 106211369 CTCTCCTTCCAGACATCGG 59 NA Rattus norvegicus 81 Olr325 ENSRNOG00000021071 ENSRNOT00000028605 1 1 1 60 1 228546008 228546026 ATCACACCCATGCTAAACC 58 228545966 228545985 TGGCTGACTTCATTTCTTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Uck1 ENSRNOG00000011467 ENSRNOT00000015792 1 1 1 80 3 11276057 11276222 GACCCACTCAAGGTTACCA 59 11275995 11276015 GTGTAGAATACCAAGATGCCC 59 NA Rattus norvegicus 81 RGD1560559 ENSRNOG00000025031 ENSRNOT00000031780 2 1 1 60 11 83676682 83676703 ATGATAGACTGGAAGGATCCTC 59 83676643 83676661 TTACATGCTGCCAGTTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cntn5 ENSRNOG00000007038 ENSRNOT00000009418 2 1 1 80 8 7951230 7952987 TGTCAAAGAACCCACAAGGA 60 7951169 7951189 TTGCAGTTAAGGACAATGCTC 59 NA Rattus norvegicus 81 Rhox2 ENSRNOG00000040013 ENSRNOT00000066130 2 1 3 106 X 123989722 123990559 AAAGGTACCTCCTTTGCCA 59 123988554 123988572 ATCTGTCATGGAGATGGCG 60 NA Rattus norvegicus 81 LOC100360619 ENSRNOG00000053623 ENSRNOT00000087392 1 1 1 65 19 38643186 38643204 GTCCTCCGAAGAGACTGTG 60 38643319 38643337 GTTGATGGCGGTGAAAGAC 60 NA DesignNoJunction Rattus norvegicus 81 Fam149b1 ENSRNOG00000006554 ENSRNOT00000065858,ENSRNOT00000079812 2 2 2 80 15 4388363 4388384 AGGCGGACTGTATAATCTTCTC 60 4382965 4388326 GAAATCCCTCTTCCATATCTGTG 59 NA Rattus norvegicus 81 Fam149b1 ENSRNOG00000006554 ENSRNOT00000065858,ENSRNOT00000079812 3 2 2 80 15 4369928 4369946 GGCCTCTTGATTCATGGGA 60 4367496 4369888 GAGCTTGTCATCAAGATCTAGGA 60 NA Rattus norvegicus 81 Crebrf ENSRNOG00000020769 ENSRNOT00000079462,ENSRNOT00000028186 3 2 2 80 10 16710033 16710054 GTTAGTGAGCTTCCCTTAACAG 59 16707641 16709992 CTTCAGCCTACAAGCTCTG 58 NA Rattus norvegicus 81 Ambp ENSRNOG00000006889 ENSRNOT00000009248 1 1 1 80 5 78977191 78978217 TCAAGAAAGAAGACTCCTGC 58 78977130 78977151 CGCCATTGTAGTAATACTTCTG 57 NA Rattus norvegicus 81 Pex2 ENSRNOG00000008748 ENSRNOT00000011579 2 1 1 81 2 98265918 98267930 AGGATCCAAGGAAAGACAGC 60 98267974 98267992 ATCCTCAGCACTCTGTTGG 59 NA InUTR Rattus norvegicus 81 RGD1559962 ENSRNOG00000026462 ENSRNOT00000036049 3 1 1 60 1 20417586 20417604 AAGATGTCCTCGTATGCCT 58 20417544 20417565 GATGCTTATTCTTGTGCTCCTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttll1 ENSRNOG00000010141 ENSRNOT00000055978 1 1 1 80 7 124357790 124359257 ATACCTCTATCTGGACTTCGT 58 124357730 124357749 CTCTTCCGGAATTCTTCCAC 58 NA Rattus norvegicus 81 Sox8 ENSRNOG00000018841 ENSRNOT00000025494 1 1 1 63 10 14936590 14936608 TCCATAACGCAGAGCTCAG 60 14935514 14935532 TTCTCGCTTTCACTCAGCA 60 NA DesignNoJunction Rattus norvegicus 81 Slc36a4 ENSRNOG00000011455 ENSRNOT00000015383 3 1 1 80 8 14262995 14263015 TACATGTGTTTCCGAGATGAG 58 14263054 14266836 TTTCACTGACTGATACAACCAC 59 NA Rattus norvegicus 81 Mef2d ENSRNOG00000031778 ENSRNOT00000051394 1 1 1 85 2 187527813 187528773 GCTATGGGTCATCTGTTCC 58 187528822 187528840 ATTGCTGAACTGCATGGAG 59 NA Rattus norvegicus 81 Rnf43 ENSRNOG00000007606 ENSRNOT00000010296 2 1 1 85 10 75022113 75022132 AGAAGCTGATGGAGTTTGTG 58 75022180 75022732 ATCGTAATTTGCCCAAGCC 59 NA Rattus norvegicus 81 Dcaf12l1 ENSRNOG00000023458 ENSRNOT00000038653 3 1 1 127 X 131342605 131342623 ATGGCTACTTCCACCTGTG 59 131342307 131342514 GGAACCCACAGCATAGAGG 60 NA Rattus norvegicus 81 Dars ENSRNOG00000003743 ENSRNOT00000005127 3 1 1 80 13 45076757 45077838 CCCAAGAAATCCTAAGCAGTC 59 45076697 45076717 TGTATTCTTTGTGCTCCAGAC 58 NA Rattus norvegicus 81 Tstd3 ENSRNOG00000028185 ENSRNOT00000030559 1 1 1 80 5 35894809 35894922 AGTCAACATACCATTGGATGAG 58 35894750 35894771 TTCTCTTCACCATACTTCTCCT 58 NA Rattus norvegicus 81 Cd5 ENSRNOG00000020872 ENSRNOT00000086669,ENSRNOT00000054812,ENSRNOT00000065376,ENSRNOT00000082482 1 4 4 81 1 226778035 226778053 ACTACAGCAATGCTTCCAG 58 226776303 226777990 CTTGGGCTGGAAATCAGAG 58 NA Rattus norvegicus 81 Olr421 ENSRNOG00000032321 ENSRNOT00000051973 1 1 1 60 3 21027835 21027856 TCCTTACCATGTATCTGATGTC 57 21027796 21027814 GAACAAGCGACAAGTACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom1r72 ENSRNOG00000056406 ENSRNOT00000086909 3 1 1 60 4 87700443 87700461 GTGGTCATGTACTGGTTGG 58 87700481 87700503 CATACATCCATAACAGGACTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem150b ENSRNOG00000028273 ENSRNOT00000032439 3 1 1 80 1 72693658 72693676 TAACTGTGGCTCTTACGCT 59 72693719 72694144 CAGATCCAAACAGCTAGAGC 59 NA Rattus norvegicus 81 Prss36 ENSRNOG00000033343 ENSRNOT00000090368,ENSRNOT00000026587 1 2 2 80 1 199394999 199395340 AGTTGTAGTCCTGGTGGTC 59 199394640 199394659 TCTTCGAATTCTCCTTGGGT 59 NA Rattus norvegicus 81 Rad9b ENSRNOG00000021480 ENSRNOT00000048454 1 1 1 80 12 39714962 39718315 AATCACTGGATTTAACCAGCTC 59 39718353 39718374 CAAGTCCAACCTGAAAGAAGTC 60 NA Rattus norvegicus 81 AABR07040565.1 ENSRNOG00000037736 ENSRNOT00000050903 3 1 1 60 X 104336831 104336849 CTTCAACAGCAACTCCCAC 59 104336789 104336807 GTCATTGAGAGCAATGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr720 ENSRNOG00000006637 ENSRNOT00000008676 1 1 1 60 3 78716706 78716725 TTAATCAGGAAGGGAGGTGG 59 78716665 78716683 ACAACTACAGTGATGTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gigyf1 ENSRNOG00000001410 ENSRNOT00000001912 2 1 1 80 12 22238393 22238415 GGGACATACCAATTAACTCTTCG 59 22238254 22238356 CTCTGCGTTCTTGAAATTTGTG 59 NA Rattus norvegicus 81 Glcci1 ENSRNOG00000008524 ENSRNOT00000011138,ENSRNOT00000086735 2 2 2 80 4 34602701 34610182 GATCGTGATAAAGACAGTGGG 59 34610222 34610242 GAACATGTAGCTGTTGTTTGG 58 NA Rattus norvegicus 81 LOC500702 ENSRNOG00000030420 ENSRNOT00000046625 3 1 1 100 6 116235643 116235667 GATGGTATTGTCTAGCATCTATAGG 58 116234214 116235585 CTGCATCATCAGTCTCAGC 58 NA Rattus norvegicus 81 RGD1310507 ENSRNOG00000009434 ENSRNOT00000083855,ENSRNOT00000056483 1 2 3 80 8 111744888 111746493 GAACACAGATGGAAAGAACCC 59 111744828 111744846 GTACCATCAAGGCAGAGGA 59 NA Rattus norvegicus 81 Mpc1 ENSRNOG00000012415 ENSRNOT00000017282 1 1 1 80 1 53027715 53038111 GGGACTATCTCATGAGTACTCAC 60 53027657 53027678 TCTTCATGTCATTGATAGCAGC 59 NA Rattus norvegicus 81 Dgcr8 ENSRNOG00000001886 ENSRNOT00000002581 3 1 1 80 11 86864191 86867612 GAAGAATAAAGCTGCCCGAG 59 86867653 86867673 TCTTTAGGCTTCTCCTCAGAG 59 NA Rattus norvegicus 81 Serpina10 ENSRNOG00000050761 ENSRNOT00000073709 1 1 1 80 6 127501513 127501531 AGGATCTTCTCCACCTCAG 58 127500354 127501469 CTGTTGTACGACCTTGGAC 58 NA Rattus norvegicus 81 Rpf2 ENSRNOG00000000587 ENSRNOT00000000717 3 1 1 80 20 45332860 45332878 GAAGTCGGACTGTTCTCTG 58 45331679 45332818 TCATACATACGACCTATCACG 57 NA Rattus norvegicus 81 Sft2d2 ENSRNOG00000003038 ENSRNOT00000004065 2 1 1 81 13 83451850 83454619 TTGTTTGCTGTTGTGGAGTC 59 83451788 83451806 GGATCCCTAGAGCAAAGCA 59 NA Rattus norvegicus 81 Olr434 ENSRNOG00000008003 ENSRNOT00000010520 1 1 1 60 3 21363372 21363391 ACCCTCTTCCTGATATTCCT 57 21363414 21363432 CCATTCCCACATTTCCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC102549842 ENSRNOG00000049259 ENSRNOT00000079626,ENSRNOT00000071889 2 2 3 94 1 37957343 37957361 GAGTGGGAATGTCTGGACC 60 37956102 37957285 GAGAAAGCAAGACCCAGGA 59 NA Rattus norvegicus 81 LOC102549842 ENSRNOG00000049259 ENSRNOT00000079626,ENSRNOT00000071889 3 2 3 95 1 37957343 37957361 GAGTGGGAATGTCTGGACC 60 37956101 37957284 AGAGAAAGCAAGACCCAGG 59 NA Rattus norvegicus 81 LOC102549842 ENSRNOG00000049259 ENSRNOT00000085560 1 1 3 60 1 37957287 37957308 GGAGAATTATAGCAACCTTGTG 57 37918596 37918615 GCAGGATGAAGATGGAAGAC 59 NA DesignNoJunction Rattus norvegicus 81 Iqgap3 ENSRNOG00000027894 ENSRNOT00000038589 1 1 1 80 2 187456543 187456564 AGAGACCACAGACATCTATGAC 59 187456604 187457431 CGGAAGAGGAAGAGACTGAG 59 NA Rattus norvegicus 81 Srsf9 ENSRNOG00000001163 ENSRNOT00000001539 3 1 1 84 12 47040636 47042131 TTCTTGTTTCAGGGCTTCCT 60 47040571 47040589 TCTGCGTAACAGACATCCC 60 NA Rattus norvegicus 81 Txlna ENSRNOG00000048242 ENSRNOT00000072165 2 1 1 80 5 147835708 147835965 AAGGAGTTTCTCTTGAAAGAGG 58 147835649 147835669 CTGCTTTAAGTGAGTCTCCTG 59 NA Rattus norvegicus 81 LOC684709 ENSRNOG00000046786 ENSRNOT00000074864 1 1 1 60 13 71305989 71306007 GTTCAGGTCTCGTCAAAGG 58 71306031 71306049 GGAACACCACCAAGATGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Teddm1 ENSRNOG00000048614 ENSRNOT00000071815 2 1 1 60 13 71323364 71323384 AGCCTTCATCCTGTTTAGACC 60 71323404 71323424 GTCACTGATGTCATCATCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sall3 ENSRNOG00000026116 ENSRNOT00000034896 1 1 1 115 18 77575095 77576493 ATCTCAAGGTACACATGGGC 60 77574999 77575017 AGAGAACTTGAGAGCGTCG 60 NA Rattus norvegicus 81 Dnajb12 ENSRNOG00000030408 ENSRNOT00000044805 1 1 1 80 20 29460918 29460937 GACACAGACATGTACCACAG 58 29460978 29462010 CTCCAGGGATTTCATAGTCTC 57 NA Rattus norvegicus 81 LOC103690015 ENSRNOG00000033146 ENSRNOT00000049028 2 1 1 61 1 77541598 77541616 CAAGATCTACGGAGGACGG 59 77541641 77541659 TAGAGCCTCTGCTGAAGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prmt8 ENSRNOG00000053804 ENSRNOT00000086772 1 1 1 80 4 160293653 160293671 GATGTTGGGAGTGGTACAG 58 160290540 160293611 GGAACATTCAATCCCAAACAC 58 NA Rattus norvegicus 81 Anks3 ENSRNOG00000003186 ENSRNOT00000004298,ENSRNOT00000077347 1 2 2 80 10 10816594 10816615 GATTCACTCCTTTGATGGAAGC 60 10816653 10818546 CCACTTTGACTCCATGATTCAG 59 NA Rattus norvegicus 81 Slc19a2 ENSRNOG00000002839 ENSRNOT00000076752,ENSRNOT00000003817 2 2 3 89 13 82562096 82563162 GTTTCAACCTTGCTGGGTG 60 82563214 82563233 CAGGAATAACGTCACCTCTC 58 NA DesignNoJunction Rattus norvegicus 81 Slc19a2 ENSRNOG00000002839 ENSRNOT00000076186 3 1 3 61 13 82557540 82557561 GCTAAATGAGATGTTCTTTGGG 58 82559162 82559182 GGTAAGAGTATGTCCACACTG 58 NA DesignNoJunction Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000070848 2 1 10 81 15 32809121 32852780 GACTGAAGGTTATACCACATGTC 59 32852819 32852839 AGGGTGATGTTATCAGACTGG 59 NA Rattus norvegicus 81 Csgalnact2 ENSRNOG00000014713 ENSRNOT00000019778 2 1 1 80 4 150167232 150167252 GTGTTCAGTCTTTACAACCCT 58 150162117 150167190 TTTATGAACCAGCTGCTGC 59 NA Rattus norvegicus 81 Xpc ENSRNOG00000008274 ENSRNOT00000011490 3 1 1 80 4 123156522 123156543 ACTAAGTCCAAGAATCTCAAGG 58 123154665 123156481 GTTACTCAATGAGTCCCGG 58 NA Rattus norvegicus 81 Uba6 ENSRNOG00000021931 ENSRNOT00000037509 1 1 1 80 14 23533869 23533888 ATCTTGAAGCAGCAGATACC 58 23533929 23535586 CATCGTATCTATCTCCTCGTG 57 NA Rattus norvegicus 81 Nmrk2 ENSRNOG00000042897 ENSRNOT00000066348 1 1 1 80 7 11385269 11385288 GTGGACTTGTACAACCAACG 60 11385328 11385644 CATGTAAGTACGGCTTCTTCTC 59 NA Rattus norvegicus 81 Tnfsf10 ENSRNOG00000013269 ENSRNOT00000017758 2 1 1 80 2 113023082 113024116 TAATTCCAATCTCCAAGGATGG 58 113024157 113024175 GAAATGAATGCCCTCTCCG 59 NA Rattus norvegicus 81 Bin2 ENSRNOG00000031930 ENSRNOT00000048262 2 1 1 80 7 142282353 142284563 TTATAACAGTCGTATTGGCTGC 59 142282294 142282314 CTCATCTCCCTGTAGAAGACG 60 NA Rattus norvegicus 81 Bmp8a ENSRNOG00000030155 ENSRNOT00000045922 1 1 1 82 5 141019931 141033085 CTTCGTCAACATGGTGGAG 59 141019867 141019887 TCTGGGTTAAGTCAAAGTGGA 59 NA Rattus norvegicus 81 Olr636 ENSRNOG00000049429 ENSRNOT00000040581 1 1 1 60 3 77290004 77290024 TGGACATTTGCTATACCTCCT 59 77290045 77290064 CTTCTCACAAGCAGATCTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Synpo ENSRNOG00000019181 ENSRNOT00000025934,ENSRNOT00000064686 2 2 2 60 18 55871388 55871410 GAAATACGTCATAGAGTCGTCAG 59 55871350 55871368 CATAGTAGGTGAAGGGCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ankrd42 ENSRNOG00000009664 ENSRNOT00000068402 3 1 1 80 1 157422352 157425561 GAGTCTAAGAAGACCATCACAG 58 157422293 157422314 CAGTTGACACTCTAACTTCTCC 59 NA Rattus norvegicus 81 Olr866 ENSRNOG00000050435 ENSRNOT00000046941 2 1 1 60 5 137845831 137845850 ACCTCATTGAGATTGTGGAC 58 137845790 137845809 AGGGAGATTGGAGTAACGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Znhit2 ENSRNOG00000021794 ENSRNOT00000028482 1 1 1 60 1 221425073 221425092 ACTCTCGCCCTATATCATGG 59 221425114 221425133 GAGTAGCACAGAAGTCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017662.3 ENSRNOG00000052843 ENSRNOT00000040046 3 1 1 79 15 29852633 29852651 TGTTTCACTGGTGGTCCTG 60 29852393 29852411 TGAGTGATTCTGGGCTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Tas2r118 ENSRNOG00000021799 ENSRNOT00000034936 1 1 1 60 4 51002723 51002741 TTCTCTGGTTGCTATTGGG 57 51002681 51002701 ACAACAGAAGGGATGATTGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Inpp5e ENSRNOG00000019039 ENSRNOT00000079882,ENSRNOT00000025764 2 2 2 80 3 3845413 3845433 CAAGTTTGACATTGGGAAGGA 59 3844832 3845373 TTGTATAGGACTCGGTCTGTG 59 NA Rattus norvegicus 81 Tmprss11b ENSRNOG00000033910 ENSRNOT00000029805 3 1 1 80 14 23456233 23456252 AGCTACTCAGAAGTTCCCAC 59 23456293 23457309 TTAGGACTGTCTCCATCTGAC 59 NA Rattus norvegicus 81 Mrpl52 ENSRNOG00000039297 ENSRNOT00000060193 2 1 1 91 15 33071215 33072033 GAGAAGCTTGCAAGACGAG 59 33072088 33072106 TCTTCCTGCAGTTTCTGCT 59 NA Rattus norvegicus 81 Trim42 ENSRNOG00000048975 ENSRNOT00000071936 1 1 1 80 8 105220236 105222148 CAAGTTCAAAGCAGTCCGA 58 105220174 105220194 TTGTCAGCTTTGAAGCTACTC 59 NA Rattus norvegicus 81 Trim42 ENSRNOG00000048975 ENSRNOT00000071936 2 1 1 80 8 105220230 105222144 TTCAAAGCAGTCCGATATGAG 58 105220170 105220189 TTCCTTGTCAGCTTTGAAGC 59 NA Rattus norvegicus 81 Cyp2ab1 ENSRNOG00000042367 ENSRNOT00000066953 1 1 1 80 11 84509156 84509509 AAATCACCAAGGCCATGGA 60 84509550 84509571 CCAGAAATAGGTCAATCACCAC 59 NA Rattus norvegicus 81 Cdh16 ENSRNOG00000012222 ENSRNOT00000016419 1 1 1 80 19 569520 569538 ACAGAAAGCCTGCATACAG 58 569580 570253 TAAGGGTAGTGGTAGCTTGAG 59 NA Rattus norvegicus 81 Cdh1 ENSRNOG00000020151 ENSRNOT00000027346 3 1 1 80 19 38769457 38769475 CGAGGTCTACACCTTCCTG 59 38769516 38817353 GTGCATCCTTCAAATTTCACTC 59 NA Rattus norvegicus 81 Rab14 ENSRNOG00000018901 ENSRNOT00000025649 2 1 1 80 3 14382951 14382969 AGGTTCAGAGCTGTTACAC 57 14379893 14382909 TGTACTTCTTCTGGTGATGTC 58 NA Rattus norvegicus 81 LOC102555377 ENSRNOG00000026569 ENSRNOT00000034746 3 1 1 90 1 62171413 62171431 ACCTTGACTGTGCTCAGAG 59 62171482 62172734 TGACATAAGTGATGACTCTCCA 59 NA Rattus norvegicus 81 Pcdhb17 ENSRNOG00000039471 ENSRNOT00000040998 2 1 1 60 18 30562982 30563003 TTAGACAGTGGAGACTATGGGA 60 30563021 30563042 TAATATCTTCTGAGGGTTGCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07017733.1 ENSRNOG00000049583 ENSRNOT00000071781 1 1 1 84 15 30413527 30414816 CTCTTCTTCACAGGTGTGAG 58 30414863 30414881 TAAAGGCACTGTCTCCCTC 59 NA Rattus norvegicus 81 Crtc2 ENSRNOG00000056337 ENSRNOT00000092144 1 1 1 80 2 189621147 189621333 CTTAACAGGACAAGCTCTGAC 59 189621375 189621393 TGTAGGGCCTGGATAAGTG 59 NA Rattus norvegicus 81 Twistnb ENSRNOG00000010750 ENSRNOT00000014373 3 1 1 80 6 52765106 52765127 GATGTGTTTCGCTTAGACTCAG 60 52765166 52765735 CTTATGCTGCAAACTTGTGGT 60 NA Rattus norvegicus 81 Nt5m ENSRNOG00000003332 ENSRNOT00000004448 3 1 1 81 10 46228860 46241103 GTCCCTATGAGAAGTATGCCT 59 46241145 46241164 GTCTTGTCTCTGGTCAACAC 59 NA Rattus norvegicus 81 Iars2 ENSRNOG00000002368 ENSRNOT00000090786,ENSRNOT00000085211,ENSRNOT00000057395 3 3 3 80 13 103255831 103255849 GAATGTTCACCAGTGCTGC 60 103255154 103255790 GCATCTTTATAACCACATCGGT 59 NA Rattus norvegicus 81 Tceal7 ENSRNOG00000037645 ENSRNOT00000046091 3 1 1 168 X 106775021 106775867 GAAGAGAAGGAATCTGTGTTCAC 60 106776284 106776303 CCATAGGGATGTTCCTCCTC 59 NA InUTR Rattus norvegicus 81 LOC684828 ENSRNOG00000048264 ENSRNOT00000075069 2 1 1 60 17 43798050 43798070 CCTTCAAACTCAACAAGAAGG 57 43798010 43798029 CCTACTTTCTTTGCTTTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aqp9 ENSRNOG00000061883 ENSRNOT00000087980 3 1 1 81 8 77560156 77563046 TTGAGGTCTTCACAGTTGGA 59 77560094 77560113 ATAAGACCTCCCAGGAAAGC 59 NA Rattus norvegicus 81 Slc11a1 ENSRNOG00000014956 ENSRNOT00000057472,ENSRNOT00000080961,ENSRNOT00000088679 3 3 5 80 9 81661226 81661593 CTTCCTGGATAACTATGGTTTGC 60 81661633 81661651 TAACCGAAGGTCAAAGCCA 59 NA Rattus norvegicus 81 Atat1 ENSRNOG00000000809 ENSRNOT00000090225 2 1 12 60 20 3364215 3364234 TAACACATGCTTCATCTCCC 58 3364255 3364275 CTGTAACAAGACCTGATCCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Atp5f1 ENSRNOG00000046299 ENSRNOT00000075083,ENSRNOT00000076379 2 2 4 114 2 208577000 208577018 CTTCGCAGACAATGCTGTC 60 208573777 208573795 TGAAAGACCCTTGTTGCCT 60 NA DesignNoJunction Rattus norvegicus 81 Ndufb11 ENSRNOG00000008329 ENSRNOT00000011183 1 1 1 80 X 1787746 1789006 AACCTCTACGCGAAGAACC 60 1789049 1789068 GAAGACAGCTCGCATATTCC 59 NA Rattus norvegicus 81 Gjb5 ENSRNOG00000059897 ENSRNOT00000081919 1 1 1 60 5 145423120 145423138 GGGTCAACAAGTACTCCAC 58 145423078 145423096 CGGAAGACAAAGACCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100912017 ENSRNOG00000045677 ENSRNOT00000050551 2 1 1 80 1 213680878 213681926 GTCTGAGTATTCTGACCTTGTC 58 213681967 213681985 GAGCTACCTTCAGAGCCTC 59 NA Rattus norvegicus 81 Tcl1a ENSRNOG00000025233 ENSRNOT00000029346 3 1 1 110 6 128890699 128894593 GATAGTCATCAAGAGTAACGGA 57 128890610 128890629 ATTAAAGGCAGCTCATACGG 58 NA Rattus norvegicus 81 Asz1 ENSRNOG00000060343 ENSRNOT00000091311 2 1 1 80 4 45363194 45371541 AGTTGGAAATTAGTGGCGA 57 45363132 45363151 GCACAGCTGTGATTAAATGG 58 NA Rattus norvegicus 81 Slc9a3r1 ENSRNOG00000003232 ENSRNOT00000004351 1 1 1 82 10 103729312 103729330 CTGGTAGAGCCAGCTTCAG 60 103729376 103729612 TGGGCATTTAGCTCCTCAC 60 NA Rattus norvegicus 81 Nkain1 ENSRNOG00000011445 ENSRNOT00000056229 1 1 1 80 5 148661193 148662658 CGGTATCTCATCCTGTATGC 58 148662701 148662719 AACCTCCAGGTAGAAGCAG 59 NA Rattus norvegicus 81 Cables1 ENSRNOG00000012795 ENSRNOT00000017187 1 1 1 83 18 3400431 3415772 TTCGTACATGACCACAGTG 58 3415818 3415837 GGAAACTTCTCCTTGAAGGT 58 NA Rattus norvegicus 81 Vom1r78 ENSRNOG00000057171 ENSRNOT00000080536 2 1 1 60 4 87943430 87943448 CACCTACCTCCTGAGTGTG 59 87943472 87943490 TGCCAACAACGAAGTTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trim69 ENSRNOG00000017157 ENSRNOT00000023209 1 1 1 80 3 114117667 114118599 GACTTCCTCACAGACATCAC 58 114118726 114118744 GGAGATAAGCTGTCTGGGT 59 NA Rattus norvegicus 81 Trim69 ENSRNOG00000017157 ENSRNOT00000023209 3 1 1 80 3 114118758 114118776 TAGGTCGCTTCAAAGGTCC 59 114118820 114122708 TTAGTTGAGATGGGCCTGG 59 NA Rattus norvegicus 81 Ppp2r1a ENSRNOG00000011282 ENSRNOT00000015019 1 1 1 80 1 60723071 60724684 TGCCCTTTCTTACAGATACCA 59 60724726 60724744 AAGTGGTGAAGGTTCCCAG 60 NA Rattus norvegicus 81 Eif3l ENSRNOG00000011020 ENSRNOT00000014817 2 1 1 88 7 120328688 120330515 CTACATTGATAAGGACATGATCCAC 60 120330561 120330579 CAAACTTGTGGATCTGCCG 60 NA Rattus norvegicus 81 LOC100365347 ENSRNOG00000043089 ENSRNOT00000065401 2 1 1 92 15 31167874 31167892 TGTTTCACTGGTGGTCCTG 60 31168496 31168514 CCCTCTGGAACAGTGAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Klk7 ENSRNOG00000018664 ENSRNOT00000025299 2 1 1 83 1 99751849 99751870 AGGTGTATAAGGATCTTCTGGG 59 99751913 99753720 CTGAGTCACCATTGCATGTG 60 NA Rattus norvegicus 81 Hist1h1a ENSRNOG00000017175 ENSRNOT00000023054 2 1 1 60 17 43614298 43614317 AGACTTCTTCTAAGAGCCCA 58 43614257 43614275 CTCTTGGCTACCTTCTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Slc6a14 ENSRNOG00000005687 ENSRNOT00000007967 3 1 1 80 X 120631194 120631212 ACTTCACCTGCTTGAATGG 58 120631256 120633593 GAAGCGTCACTTTATCCCA 58 NA Rattus norvegicus 81 Olr1297 ENSRNOG00000046553 ENSRNOT00000075687 1 1 1 60 15 35505243 35505264 TGTATCCATGTCCTTTCAAGTC 58 35505285 35505303 TAAGCCAACACCATACACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ifi27 ENSRNOG00000009263 ENSRNOT00000063970 2 1 2 148 6 127333677 127333696 GTGTCAGCCATTGCTAATGG 60 127334212 127334320 ACCTCTGTTCCCATGTTGG 60 NA Rattus norvegicus 81 AABR07031158.1 ENSRNOG00000043413 ENSRNOT00000073306 3 1 1 139 18 2182272 2182290 CTTTGTGATGGAGGAGGGT 59 2181404 2182170 GATGGCGAGTTATCACAGAG 58 NA Rattus norvegicus 81 AABR07072562.1 ENSRNOG00000050653 ENSRNOT00000073029 3 1 1 60 17 69617336 69617357 CCTAAACAACAGACACCAAGAC 60 69617376 69617396 TTCTTTGGTAGAAGAACTGGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plaa ENSRNOG00000007753 ENSRNOT00000010621 3 1 1 80 5 113567882 113567987 ATGATGACATTACAGGGTCAC 58 113567822 113567843 TGATCCAGTTAACATTAAGCCC 59 NA Rattus norvegicus 81 Mrgprb4 ENSRNOG00000033021 ENSRNOT00000045792 3 1 1 60 1 103426271 103426289 ATAGGAATGCCTTCTCCGT 58 103426229 103426250 CAGAGGTACAAGAAATCAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1307391 ENSRNOG00000001439 ENSRNOT00000001957 2 1 1 80 12 23876259 23876278 AGAAGTGTGAAGAAACACCG 59 23874938 23876102 CTTGAGGCTTCTCGATCTG 58 NA Rattus norvegicus 81 Tfb1m ENSRNOG00000056223 ENSRNOT00000078768 3 1 1 80 1 44453999 44454018 GTACCTCTGCAATGTTGAGC 59 44435607 44453957 ACCACTCCTACATCAACCTC 59 NA Rattus norvegicus 81 Fbxo44 ENSRNOG00000009298 ENSRNOT00000067059 2 1 1 80 5 164968135 164968246 TGACTTCCTATTACACCTGCC 60 164968075 164968093 TGGTGTCCATCAGTTCCTC 59 NA Rattus norvegicus 81 Malt1 ENSRNOG00000017181 ENSRNOT00000068418 3 1 1 80 18 61156466 61156485 AGTATAGTCCACAAGCCACC 59 61156523 61158582 TGGATCAATATCTAGGTCAAGAGG 59 NA Rattus norvegicus 81 Grina ENSRNOG00000029941 ENSRNOT00000059599 3 1 1 81 7 117306587 117306605 CTCCCTCATTGTCCTCAGC 60 117306650 117306788 GATGGTCAGGATCGACAGG 60 NA Rattus norvegicus 81 Adora3 ENSRNOG00000015788 ENSRNOT00000021236 1 1 1 80 2 208531471 208531489 CTTCCATCATGTCCTTGCT 58 208531530 208533431 TGGTAACCGTTCTATATCTGAC 57 NA Rattus norvegicus 81 Gng5 ENSRNOG00000015936 ENSRNOT00000021358 3 1 1 83 2 252363674 252363695 AGTGTCTTCAAGTACAAATCCC 58 252363737 252367341 AGTAGTTTGAGAAACCTCGAG 58 NA InUTR Rattus norvegicus 81 Fanca ENSRNOG00000016706 ENSRNOT00000022658 1 1 1 80 19 56077585 56082405 CCACCAAAGGAGTTACAACC 59 56077524 56077546 CTAGAAAGAAGATCCTCGTTTCC 59 NA Rattus norvegicus 81 Egfl7 ENSRNOG00000019388 ENSRNOT00000026318 1 1 1 80 3 4040423 4040442 CTTTGTGCAGCGTGTATACC 60 4040485 4041467 CGGTAGATGGTTCGGTAGG 59 NA Rattus norvegicus 81 Cirh1a ENSRNOG00000020333 ENSRNOT00000027553 3 1 1 80 19 39109656 39111266 ATCTAAAGCTTCACTGCACAG 59 39111308 39111326 CCAGGTTGTTGGTATTGGG 58 NA Rattus norvegicus 81 Ceacam16 ENSRNOG00000031391 ENSRNOT00000045306 2 1 1 80 1 80780345 80780836 ACATGCAGGTCTATGAGATCC 60 80780285 80780303 GAAGGGTATCCCTACGCTC 59 NA Rattus norvegicus 81 LOC683961 ENSRNOG00000048698 ENSRNOT00000073017 2 1 1 60 5 57658259 57658279 CCGCCTGATTCTAATTGAGAG 59 57658297 57658319 CCGCTTAGTCTTATAGTATCGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fpr1 ENSRNOG00000011174 ENSRNOT00000014842 1 1 1 60 1 59766731 59766752 CCTCAACCCAATCCTTTATGTC 59 59766770 59766791 GGAGTGGATTAGTCTTTGTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam129b ENSRNOG00000015845 ENSRNOT00000021689 1 1 1 80 3 11956258 11957574 TGTATGAGAACAAAGTGGCCT 60 11957616 11957634 AGGTGAGAACCTTGTAGCC 59 NA Rattus norvegicus 81 Fbxl3 ENSRNOG00000059334 ENSRNOT00000089876 1 1 1 80 15 93656811 93660053 GCTTTATGGATCTACCAAAGTCTC 59 93656754 93656774 TAAGTGAGGACAGGGATTTGG 60 NA Rattus norvegicus 81 Cpne3 ENSRNOG00000006298 ENSRNOT00000008281 3 1 1 80 5 33559962 33559982 CTGATCTAACGTCAAAGTCCG 59 33559205 33559920 TGCGTTCAACCTCATACCA 59 NA Rattus norvegicus 81 Rn60_2_2279.2 ENSRNOG00000051203 ENSRNOT00000076296,ENSRNOT00000076549 3 2 2 84 2 208556341 208556359 TCCTCATCAAGAGCTGCAG 60 208555762 208556046 ATAGATGACAGCTTGGTGGG 60 NA Rattus norvegicus 81 Dclk1 ENSRNOG00000032922 ENSRNOT00000072110 3 1 3 148 2 144861597 144862510 GAACTCATAGAAGTTAATGGAACCC 60 144866046 144866065 ACTGAGTCCAAATCATCCGA 59 NA Rattus norvegicus 81 Mras ENSRNOG00000014060 ENSRNOT00000050374,ENSRNOT00000077963 2 2 2 82 8 107633349 107633368 ATAGAAACCAGTGCCAAGGA 59 107632055 107633307 GGAACCTGTTGCCTAATTACTC 59 NA Rattus norvegicus 81 Cog3 ENSRNOG00000000155 ENSRNOT00000000168 2 1 1 80 15 57779628 57779648 GACATCACAGGCTATAAACCA 58 57777838 57779586 ACTCTGTGCAATTTGCTCC 59 NA Rattus norvegicus 81 Eefsec ENSRNOG00000012954 ENSRNOT00000063950,ENSRNOT00000017323 1 2 2 80 4 120295797 120298569 ACTCATTGAGCTTCTGAAGTC 58 120295737 120295757 CAGTGATCCACAGACATAAGG 58 NA Rattus norvegicus 81 Gcgr ENSRNOG00000036692 ENSRNOT00000054962,ENSRNOT00000088898,ENSRNOT00000083601 3 3 3 80 10 109714943 109715076 ATTACAAGTTCCGGCTAGC 58 109715120 109715138 TCACAAAGGCAAAGACCAC 59 NA Rattus norvegicus 81 Avl9 ENSRNOG00000013314 ENSRNOT00000018425 3 1 1 80 4 87034521 87035544 GCACATAACTATCAGGAAGATACTG 59 87035578 87035600 AGAGATACCATATACTGTGGCTC 59 NA Rattus norvegicus 81 Ppat ENSRNOG00000002128 ENSRNOT00000002905 1 1 1 80 14 33606191 33606209 TCAGAGACTGAAGGATGGG 58 33606250 33607866 CTTCACTTCATGGCAATATCTC 57 NA Rattus norvegicus 81 AABR07051400.1 ENSRNOG00000047244 ENSRNOT00000072628 3 1 1 80 3 9233572 9233593 CATGATGTCCAGTGAATATGGC 60 9231592 9233532 CGTTTCAGTGGTTTAGCCTG 60 NA Rattus norvegicus 81 Kdr ENSRNOG00000046829 ENSRNOT00000071405,ENSRNOT00000090183,ENSRNOT00000085089 3 3 3 80 14 34733701 34736974 TGTCTATGTTCAAGATCACAGG 58 34737013 34737033 TTGTTCTCAGTGATGTACACG 58 NA Rattus norvegicus 81 Zfp426 ENSRNOG00000033624 ENSRNOT00000038069,ENSRNOT00000077465 2 2 2 62 8 21479630 21480224 CAAACGCAGACAGGAAGTG 60 21479586 21479606 GAAGTCTCCATATTGTGTCCC 58 NA DesignNoJunction Rattus norvegicus 81 Lpcat4 ENSRNOG00000005058 ENSRNOT00000006776 3 1 1 80 3 103730275 103730380 ATCGTGGATGTAGAGTTCCTC 59 103730421 103730440 GACGTTGTTGGCATAAAGGG 60 NA Rattus norvegicus 81 Selp ENSRNOG00000002794 ENSRNOT00000003759 2 1 1 80 13 82456373 82456391 TGGGATCTCGAAATGTGGA 58 82456433 82457544 GAAGTGATGTTACACCTTTGC 58 NA Rattus norvegicus 81 Tlr5 ENSRNOG00000022067 ENSRNOT00000004821 1 1 1 60 13 101383293 101383312 AACATCAAAGATCCCGACCA 60 101383335 101383353 GTTGTAGCACCGAACTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103691445 ENSRNOG00000050842 ENSRNOT00000071711 1 1 1 60 15 35910083 35910104 GACCAAGGGAAAGTATCATCAG 59 35910122 35910143 TAAGAGGATTCAACATAGGCAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC103691445 ENSRNOG00000050842 ENSRNOT00000071711 2 1 1 60 15 35909598 35909617 TTGCTGTTTCAGAATGTCAC 57 35909639 35909658 GATATAGCCACATAGCGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cdt1 ENSRNOG00000013970 ENSRNOT00000018923 3 1 1 89 19 55382667 55383066 CAGAACAACCATGTGTCGA 58 55383119 55383137 TGTATGGTAGGACAAGGCC 59 NA Rattus norvegicus 81 Olr215 ENSRNOG00000050698 ENSRNOT00000036261 3 1 1 60 1 170888125 170888147 GCTATTGTTATGTATGTCCTGCC 60 170888164 170888185 AGCTGATATTGTCTTGTTTGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 S100a11 ENSRNOG00000010105 ENSRNOT00000013393 1 1 1 80 2 193867083 193868357 TTCACGAAGAACCAGAAGGA 59 193868400 193868418 ATCTAGCTGCCCATCACTG 59 NA Rattus norvegicus 81 S100a11 ENSRNOG00000010105 ENSRNOT00000013393 2 1 1 81 2 193867084 193868357 TCACGAAGAACCAGAAGGA 58 193868402 193868420 AAATCTAGCTGCCCATCAC 58 NA Rattus norvegicus 81 Prss30 ENSRNOG00000033266 ENSRNOT00000034340 2 1 1 89 10 13350779 13350928 TATTGCATTCAGGTGCTGG 58 13350708 13350726 CTTTCTCTGTCCTCAGGCT 59 NA Rattus norvegicus 81 Cited4 ENSRNOG00000046607 ENSRNOT00000072427 1 1 1 91 5 139598089 139598107 ATACGGCTCTTTCGGATCG 60 139598162 139598180 TAGCTGCAGACTGAAGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 mrpl9 ENSRNOG00000020869 ENSRNOT00000028316 3 1 1 81 2 195685187 195685205 TAAGTTGGTGGAGGACACG 59 195685249 195685953 CACTCCAATTTCGTCCACAG 59 NA Rattus norvegicus 81 RGD1308139 ENSRNOG00000018550 ENSRNOT00000025553 1 1 1 80 10 59630163 59631209 TCAAGTGATGTAGAGTTGGAC 58 59631251 59631269 TTTGTTAGCTGGACGAAGG 58 NA Rattus norvegicus 81 Nav3 ENSRNOG00000052157 ENSRNOT00000082100 2 1 1 80 7 52318388 52335396 AGCTATCTGGTGAAGACCC 59 52318326 52318344 TCTCTTCCAAGTTCTGCCT 58 NA Rattus norvegicus 81 Pcbp3 ENSRNOG00000001245 ENSRNOT00000001675 2 1 1 80 20 12591018 12591036 TGGAATCTAAGGTCTCGGA 57 12591080 12592273 TGCTTCCAACTTCCTTTCC 58 NA Rattus norvegicus 81 Dnah6 ENSRNOG00000015581 ENSRNOT00000020894 3 1 1 80 4 101081279 101081381 GTTCAATCCAAGGTAGACTCAG 59 101081220 101081239 GTTATCCAGGTCTACGTCCC 59 NA Rattus norvegicus 81 Csf3r ENSRNOG00000008759 ENSRNOT00000011694 1 1 1 80 5 144038573 144038789 TAAAGAGCTTCAGGAGCCG 60 144038833 144038851 TGCTGTGTCTCTTCTTGGG 60 NA Rattus norvegicus 81 Sugt1 ENSRNOG00000012594 ENSRNOT00000017086,ENSRNOT00000042606 3 2 2 81 15 61910251 61913777 AAGTCATTTATGGAGTCTGGTG 58 61913816 61913837 GAGGGTTGATTTCAACTTTCCT 59 NA Rattus norvegicus 81 Glt8d1 ENSRNOG00000018179 ENSRNOT00000013291,ENSRNOT00000024624 1 2 2 80 16 7096438 7096533 ATGAAGCTCAATGTAGAAGAGG 58 7096572 7096592 AAATACGATAAGCAGAGGAGG 57 NA Rattus norvegicus 81 LOC688708 ENSRNOG00000022305 ENSRNOT00000044108 1 1 1 80 10 576411 578460 GAGATTGGTGAGAAGGGTG 58 576349 576368 AGAGTTACAATACACAGCCC 57 NA Rattus norvegicus 81 Rwdd1 ENSRNOG00000042916 ENSRNOT00000068777 1 1 1 80 20 27535611 27538493 AATTCCTGGAGGATGCTGG 60 27535549 27535571 CATCTTCTAGCTCCAAATCATCC 59 NA Rattus norvegicus 81 Klhdc8a ENSRNOG00000000036 ENSRNOT00000000041 1 1 1 80 13 49075591 49075609 GGCAAGTGGAAGAAGAGGA 59 49075649 49078749 GGCATACACTCGATAATCTTTGG 60 NA Rattus norvegicus 81 Ube2v2 ENSRNOG00000001829 ENSRNOT00000031401,ENSRNOT00000088212 1 2 2 94 11 89570212 89570230 GTGATGGTACGGTTAGCTG 58 89570288 89574237 ATAGTTTGTCCTTGGTGGC 58 NA Rattus norvegicus 81 AABR07032229.1 ENSRNOG00000048302 ENSRNOT00000073388 3 1 1 60 18 55464382 55464400 CTCCCTTCACTGACCTTCC 59 55464422 55464442 ACTTCAGGCATTTCTTCAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rn60_X_0695.1 ENSRNOG00000038099 ENSRNOT00000057979 3 1 1 60 X 68581242 68581263 AGCTTCCTTGTATCTACACCAG 60 68581283 68581302 ATAGATGGTAGCACCCACTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rsph4a ENSRNOG00000047471 ENSRNOT00000064063 1 1 1 80 20 33954298 33954316 CCAAGTGATTGACCTGGTG 59 33954360 33958635 CAATTACAGCGACCCTGAG 58 NA Rattus norvegicus 81 Rsph4a ENSRNOG00000047471 ENSRNOT00000064063 2 1 1 80 20 33958697 33958715 CCTGACTACGTAGAGCAGG 59 33958753 33959481 AGAGGGTATATTCTGAATCTCTAGG 59 NA Rattus norvegicus 81 LOC100911932 ENSRNOG00000050278 ENSRNOT00000074361 3 1 1 60 1 220363797 220363815 TTTGCTCCCAGATGTTCCA 59 220363839 220363857 GAGAGCTGAGACAGAAACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Nek11 ENSRNOG00000042432 ENSRNOT00000046816 1 1 1 80 8 113866133 113866154 TGACAATCAGATAGTGGAATGG 58 113854256 113866094 TCTCGATGAAGTATCCTCCTC 58 NA Rattus norvegicus 81 Dstyk ENSRNOG00000021298 ENSRNOT00000004810 2 1 1 80 13 49211125 49211143 AAGACAGTGAGGACACTGC 60 49211185 49224930 CAATGTCCACTTCCTGTAGGA 60 NA Rattus norvegicus 81 Prpf19 ENSRNOG00000020897 ENSRNOT00000028373 2 1 1 80 1 226952903 226954814 TCATCCTTCTCAGGAATTGGT 59 226954856 226954874 ACACAAGAAGTGTTCGGGA 59 NA Rattus norvegicus 81 Pde4a ENSRNOG00000020828 ENSRNOT00000061100 3 1 1 80 8 22227726 22227745 TGGAGACGAAGAAAGTGACC 60 22228694 22228951 CCATGTTCCTGAGGACCTG 60 NA Rattus norvegicus 81 Pagr1 ENSRNOG00000020217 ENSRNOT00000027392 1 1 1 80 1 198449235 198449980 AAGACGTACACCAGGAAGC 60 198449173 198449192 TGTCGCTTCATGTCTGAGAG 60 NA Rattus norvegicus 81 Pip4k2a ENSRNOG00000016670 ENSRNOT00000022375 1 1 1 91 17 85538649 85543758 GATGTCGAGTTCCTTGCAC 59 85538576 85538594 TCAACCTCCTCTTGCTCTG 59 NA Rattus norvegicus 81 Arpc2 ENSRNOG00000014289 ENSRNOT00000078317,ENSRNOT00000084682,ENSRNOT00000085124,ENSRNOT00000019265 3 4 9 60 9 81548510 81548529 GCTTGCTACTGGATAATCGT 58 81548550 81548570 GAATCCCTTAAGAACCTGGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam110a ENSRNOG00000050946 ENSRNOT00000074295 3 1 3 62 3 147478107 147479174 CATGGAGAACTTGAGCGGA 60 147478063 147478082 GAGAAGACAGATACAGGCAC 58 NA DesignRelaxed, InUTR Rattus norvegicus 81 Wbscr22 ENSRNOG00000033700 ENSRNOT00000044449 2 1 1 80 12 24677377 24677861 AAGCAAAGAAGTTCTACCTCTG 58 24678160 24678179 CTGCTTCCTGACTTTCAGTC 59 NA Rattus norvegicus 81 Nup43 ENSRNOG00000049505 ENSRNOT00000080138,ENSRNOT00000073528 2 2 2 80 1 1779148 1781225 TCTCTTTCACCAAGGAGGA 58 1781268 1781287 GAACTTACTAGGGACAGGTG 57 NA Rattus norvegicus 81 LOC500948 ENSRNOG00000031660 ENSRNOT00000041021 2 1 1 80 8 16347341 16347361 GAGCCAGATATGGATGTCTCC 60 16343532 16347304 GTGTATTAGGTACAGCAATCATCC 60 NA Rattus norvegicus 81 Clcnkb ENSRNOG00000009897 ENSRNOT00000080462 2 1 3 83 5 159961494 159961512 CCTCTGCAAGAACTCTGGA 59 159960720 159960738 TCACAGCTCTTTCCTTGGG 60 NA DesignNoJunction Rattus norvegicus 81 Lipg ENSRNOG00000018694 ENSRNOT00000025257 3 1 1 80 18 70911032 70911050 CTATCCCAATGGTGGTGAC 58 70910045 70910989 TCTGAGATTGTTCCATACGC 58 NA Rattus norvegicus 81 Olr1231 ENSRNOG00000058298 ENSRNOT00000088867 2 1 1 60 4 1431465 1431483 ATGCCAATCTCATCAACCA 57 1431504 1431525 GTACAAGAAAGTTGGAGGAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tulp3 ENSRNOG00000005767 ENSRNOT00000007634,ENSRNOT00000067895 1 2 2 80 4 161652971 161653513 TCATCCTACATGGCATCGA 58 161652909 161652927 AGAGAACTTGAGGCTTGCT 59 NA Rattus norvegicus 81 Mllt11 ENSRNOG00000021110 ENSRNOT00000028664 2 1 1 84 2 196394260 196402082 GCTAACAGGGAATCATGCG 59 196394194 196394212 AGATCCAGTTCTGGGATGG 59 NA InUTR Rattus norvegicus 81 Zfp93 ENSRNOG00000042101 ENSRNOT00000017008 1 1 1 60 3 165692664 165693414 TTTAACTGCTGCTATCCAGG 58 165692623 165692641 GGTCCAAGTCTTTCATGCC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07055485.1 ENSRNOG00000053774 ENSRNOT00000045977 1 1 1 80 7 4066703 4066770 CCTGTTCTTACATCAAGCCT 58 4066642 4066660 GGGCAATGGAAGTAGTGAG 58 NA Rattus norvegicus 81 Rn60_X_0750.2 ENSRNOG00000051310 ENSRNOT00000076781 1 1 1 60 X 74188577 74188595 ATGTCAAGCTGCACTACTG 58 74188619 74188637 GATCGATTCCTGACCACCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sall2 ENSRNOG00000013287 ENSRNOT00000078180 3 1 2 120 15 28733452 28733471 ATTGTGTCCTAACCCATCCC 60 28732975 28733369 CTCACTAGCATCACCTCCG 60 NA InUTR Rattus norvegicus 81 Sall2 ENSRNOG00000013287 ENSRNOT00000017730 1 1 2 104 15 28732977 28745382 TGAGAACGGTGATGCTAGTG 60 28732892 28732910 CAACATGCGTTCTGGTGAG 60 NA Rattus norvegicus 81 Myo7a ENSRNOG00000013641 ENSRNOT00000019053 3 1 1 80 1 163019134 163020322 GTGTGAGAAGGAGGATGAC 57 163019072 163019090 CGCTCCAGAATCATCTCAG 58 NA Rattus norvegicus 81 Etl4 ENSRNOG00000008666 ENSRNOT00000073718 2 1 1 80 17 87678764 87679475 AATACCGTCAGGCTAATGGA 59 87679516 87679536 TCTTAGAAGCAGGTAAGGAGG 59 NA Rattus norvegicus 81 Etl4 ENSRNOG00000008666 ENSRNOT00000073718 3 1 1 80 17 87588996 87592745 TGATGTGAGGAATATCCAAGAC 58 87592786 87592804 TTTGCCATGTGGTTAAACG 57 NA Rattus norvegicus 81 Lsg1 ENSRNOG00000001727 ENSRNOT00000081081,ENSRNOT00000002354,ENSRNOT00000090940 1 3 3 80 11 73712858 73712877 GAGAAAGAAGGTGTGAAGGT 58 73712917 73714657 TACTTCATCCTTAGAGTCACCA 58 NA Rattus norvegicus 81 St6galnac3 ENSRNOG00000056894 ENSRNOT00000082253,ENSRNOT00000091407 3 2 2 81 2 259382705 259382723 TTTATCCTGGCCATGGACG 60 259381631 259382661 TATACCCTTCTGTCGTGCAG 59 NA Rattus norvegicus 81 Olr14 ENSRNOG00000050901 ENSRNOT00000048861 3 1 1 60 1 149632672 149632693 CTGACTTCCATGTCTTATGACC 59 149632633 149632652 TGGCATCATAGTTGAGTGGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tgif2-ps1 ENSRNOG00000030925 ENSRNOT00000048929 3 1 1 60 17 49516954 49516974 ACAGGTGGACTCTTCAATACG 60 49516996 49517014 TGAAGTCGTCCTTGTCCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rps29 ENSRNOG00000004196 ENSRNOT00000005577 1 1 1 82 6 91456336 91456354 GATCCGTAAATACGGGCTG 58 91455442 91456293 CTTAGTCCAACTTAATGAAGCC 57 NA Rattus norvegicus 81 Zfp648 ENSRNOG00000031569 ENSRNOT00000050365 1 1 1 60 13 71656701 71656719 CATGATTCGTGACAGCCAG 59 71656740 71656761 CCTACCATCCTCTTCTTCACTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmprss11f ENSRNOG00000002005 ENSRNOT00000002745 1 1 1 80 14 23996031 23996052 TAATAAGCCATCGTTTAGCCTC 58 23993530 23995187 ATTCTTATCCCACATCGACTG 58 NA Rattus norvegicus 81 Hist3h3 ENSRNOG00000054539 ENSRNOT00000079880 1 1 1 81 17 44763829 44763847 GACTTCAAGACCGACTTGC 59 44763892 44763910 ATAGACCCACAAGGTAGGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tpd52l3 ENSRNOG00000042441 ENSRNOT00000066891 1 1 1 60 1 248196087 248196105 CTTAAGCTTGCGTGACCTG 59 248196129 248196147 CTTCCTCTTGAGTTCGCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Drg1 ENSRNOG00000018590 ENSRNOT00000025241 3 1 1 88 14 83468925 83468944 ATTCGTTTGAACAGCAAACC 58 83464682 83468874 TCACTCTGAGGACAAGTGG 59 NA Rattus norvegicus 81 Irf9 ENSRNOG00000019478 ENSRNOT00000026364 3 1 1 80 15 34286450 34287415 TCTGTAGAGATTTGGCCCAG 59 34287458 34287476 TCCTGTCCCAGAAATGCAG 60 NA Rattus norvegicus 81 Thrap3 ENSRNOG00000009977 ENSRNOT00000013570 3 1 1 80 5 144181672 144185184 TCAAAGAAGCAGAAGAAGCAC 59 144181612 144181631 GTAGGAGTGAGATGACTGGG 59 NA Rattus norvegicus 81 Kcmf1 ENSRNOG00000015097 ENSRNOT00000020671,ENSRNOT00000078956 3 2 2 80 4 100769456 100779740 CAACAGAAGTGATTTGTCCCA 59 100769396 100769416 GATGAGCTGCAAAGTCATCTG 60 NA Rattus norvegicus 81 Myl10 ENSRNOG00000028981 ENSRNOT00000041654 3 1 1 110 12 23012206 23014536 CAAGGCTGACTTCATTAAGGA 58 23011988 23012006 TCTAAGTTGCCACAGACGT 59 NA Rattus norvegicus 81 Adcy4 ENSRNOG00000020401 ENSRNOT00000027719,ENSRNOT00000067536 2 2 2 80 15 34457091 34457109 GAACCGAAACTGATGGGAG 58 34456432 34457049 GTAATACTCATTCTGCCGAGC 59 NA Rattus norvegicus 81 Mrc1 ENSRNOG00000018251 ENSRNOT00000024736 1 1 1 80 17 81411364 81412050 TACACAAATTCAGGGTTCTGG 58 81412091 81412110 GATGCTGCTATTATGTCGCT 58 NA Rattus norvegicus 81 Mrc1 ENSRNOG00000018251 ENSRNOT00000024736 2 1 1 80 17 81417222 81418683 GTCGTACGAAGATGTTGACTG 59 81418725 81418743 TCACAGGTGCTATCCATCC 59 NA Rattus norvegicus 81 Atl3 ENSRNOG00000021203 ENSRNOT00000028787 1 1 1 80 1 222764190 222764213 GAAACTACTGGGATTCAGATTTGG 60 222764250 222770379 CATCAGAACAACTGCAACCTC 60 NA Rattus norvegicus 81 Bcl11b ENSRNOG00000005776 ENSRNOT00000088421 2 1 3 80 6 131912783 131912804 CGATGAAGATGACCATCTACTG 59 131838872 131912743 GAAGGCTCATCTTTACCTGC 59 NA Rattus norvegicus 81 Hadh ENSRNOG00000010697 ENSRNOT00000014658 2 1 1 80 2 236362933 236362955 CCAGAAGACATTTGAATCTCTGG 60 236361315 236362893 AATCCAGGAGTGTCCTTGC 60 NA Rattus norvegicus 81 Kcnk16 ENSRNOG00000006422 ENSRNOT00000008461 3 1 1 86 15 4478841 4479301 CTACCATAGGTTATGGAAACCTG 59 4479347 4479365 TGAGTGGGATTCCCATCAG 59 NA Rattus norvegicus 81 Lancl3 ENSRNOG00000003756 ENSRNOT00000005042 3 1 1 81 X 14476541 14476563 GTGCATATGTCTTCCTTCTTCTC 59 14476602 14490195 AAGAACTGAGCAAACCTTTGG 59 NA Rattus norvegicus 81 RT1-DOa ENSRNOG00000026762 ENSRNOT00000091485 1 1 2 94 20 3891808 3891998 TACCCGCAGGTAACTTCTG 59 3892056 3892074 ACACTGTAATAGGCTGCCG 60 NA Rattus norvegicus 81 Mlph ENSRNOG00000019763 ENSRNOT00000080449 1 1 1 88 9 98092558 98092576 CTGATGAAGACAGCATCCC 58 98092627 98094937 CTCCGAGATCTGAGTCTCAG 59 NA Rattus norvegicus 81 Olr838 ENSRNOG00000050363 ENSRNOT00000051234 2 1 1 60 5 59292673 59292692 TTTCTCACTCCCAGGAAGAC 59 59292632 59292652 AAGACAGAAACATCTGCATGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lix1 ENSRNOG00000012988 ENSRNOT00000017442 1 1 1 80 1 59199461 59209698 CTGGAGTTTCAGGAACTAATGAC 59 59209738 59209756 GCACTTTGTTTCACGGAGG 60 NA Rattus norvegicus 81 Abca17 ENSRNOG00000039656 ENSRNOT00000060818 3 1 1 80 10 13657709 13660063 CTTTGCGTATTCAAGGTTCTG 58 13657649 13657668 CGTAGAGCTTATCGAAGTCC 58 NA Rattus norvegicus 81 Spcs1 ENSRNOG00000018075 ENSRNOT00000024447 2 1 1 81 16 7080772 7081246 TTTCTCGTGTTTGCTGACAC 59 7080710 7080728 GCCTGAGTCTTGAACAGGT 60 NA Rattus norvegicus 81 Mlst8 ENSRNOG00000009667 ENSRNOT00000014269 1 1 1 80 10 13841617 13841730 CGTCACAGCTTCTTCAGAC 59 13841555 13841573 TGATGGCCACCATACTCTC 59 NA Rattus norvegicus 81 Parvg ENSRNOG00000052064 ENSRNOT00000085216 3 1 1 80 7 125300201 125300219 ATTGGACAGCTAGAAGGCT 58 125300263 125304976 ATTGTGCAGCATCTCTGTG 59 NA Rattus norvegicus 81 Masp2 ENSRNOG00000011258 ENSRNOT00000016317,ENSRNOT00000079407 3 2 2 81 5 165415729 165415747 CCTTCCACTCCGACTACTC 59 165415791 165416365 CTGCATTCATCCACATCCTC 59 NA Rattus norvegicus 81 LOC100360087 ENSRNOG00000031506 ENSRNOT00000044711 3 1 1 60 5 152326451 152326471 CTCTGTGACTTCTTGGAAAGC 59 152326490 152326511 CCATCTTCTTGATGAGCTTCAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hist1h2ail1 ENSRNOG00000046144 ENSRNOT00000072019 1 1 1 152 17 43616408 43616426 CTACCAGAAGTCCACCGAG 59 43616542 43616560 AACAGACCCACAAGGTAGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rpl13 ENSRNOG00000015335 ENSRNOT00000020635 2 1 1 115 19 55918426 55918915 AAGGGAGACAGTTCTGCTG 59 55919863 55919881 TTCTCCTCTTCCGTGATGG 59 NA Rattus norvegicus 81 Gemin7l1 ENSRNOG00000034168 ENSRNOT00000040934 3 1 1 61 4 78954727 78954745 GAAGGTGTACACGTGACTG 58 78954684 78954704 ACGTAGAAGTTAGCTACATCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sdf2l1 ENSRNOG00000001859 ENSRNOT00000002540 2 1 1 80 11 88123022 88123889 TATCCAACAACCAGGAGGT 58 88123932 88123951 CAGAACATCGTACTGTCCAC 58 NA Rattus norvegicus 81 Sdf2l1 ENSRNOG00000001859 ENSRNOT00000002540 3 1 1 80 11 88123021 88123889 CTATCCAACAACCAGGAGGT 59 88123930 88123950 AGAACATCGTACTGTCCACAG 60 NA Rattus norvegicus 81 Gin1 ENSRNOG00000011962 ENSRNOT00000016028,ENSRNOT00000087355 1 2 4 80 9 111205732 111205750 GAACCAGACTCAAACGACC 59 111200742 111205690 GATAAAGACTGTCCTGCTCAC 59 NA Rattus norvegicus 81 Zfp422 ENSRNOG00000013379 ENSRNOT00000018050 2 1 1 229 4 148761417 148761435 TCTCCGCCTCTTCCTAGAG 60 148759399 148759418 TTGCACTTCGAGAAATACCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Fam151a ENSRNOG00000007799 ENSRNOT00000010288 1 1 1 80 5 126346347 126346365 GTAGAGTGGTTGGCTCTGG 60 126346405 126346862 TAGGATCATGCCTTCTCTATCAG 59 NA Rattus norvegicus 81 Rps29 ENSRNOG00000032542 ENSRNOT00000046690 3 1 1 60 3 147490560 147490578 TGATCCGTAAATACGGGCT 59 147490518 147490536 ATGTCCTTCGCGTACTGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mdm4 ENSRNOG00000009696 ENSRNOT00000012984 2 1 1 80 13 49796676 49798827 GACAAGAAGATGGTTGAAGGG 59 49796616 49796638 GACTTCCACATCAGTATCATCAC 59 NA Rattus norvegicus 81 Zfp580 ENSRNOG00000016274 ENSRNOT00000021772 2 1 1 256 1 72339270 72339288 CTCCACTTCTTCCTCGGTG 60 72339032 72339051 AAGTAAAGGGCTTGAGGTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspan11 ENSRNOG00000054360 ENSRNOT00000087834 1 1 1 80 4 160495386 160495404 GTCATGACAACTGGCTTCC 59 160495445 160510246 CAACAGGCAGAAATATGTGGAG 60 NA Rattus norvegicus 81 Olr816 ENSRNOG00000005431 ENSRNOT00000007200 2 1 1 60 4 72567646 72567664 CCCTGATCTACAGCCTGAG 59 72567687 72567706 TTCCACAGTGATCTTCTGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Exoc1 ENSRNOG00000002144 ENSRNOT00000090470,ENSRNOT00000091230,ENSRNOT00000059814 1 3 3 80 14 34161123 34165281 TTGTTCAACAGGGTCACGA 60 34161061 34161079 GAAATGGATGGTGGTTGGG 59 NA Rattus norvegicus 81 Sox12 ENSRNOG00000007514 ENSRNOT00000009852 1 1 1 65 3 147865180 147865198 CACAACGCTGAGATCTCCA 60 147865133 147865151 AATCTTCTCCGAGTCCTGC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyp2g1 ENSRNOG00000020827 ENSRNOT00000028261 3 1 1 80 1 83627567 83629165 TCAAGGTTATGGTTTAGCTCTG 58 83629205 83629224 AAGTTTCGAAGGACAGTCAG 58 NA Rattus norvegicus 81 Otub2 ENSRNOG00000009117 ENSRNOT00000012124 2 1 1 84 6 127295617 127295635 GGGAACTGCTTCTACAGGG 60 127295680 127297613 GCTCTTTGAACTTGAGGATCTC 59 NA Rattus norvegicus 81 Dnajc16 ENSRNOG00000012503 ENSRNOT00000017247 3 1 1 80 5 160328200 160328218 TGCTGTCCCTCATCTTCTC 59 160328051 160328157 GCTCCTCATTTGAGTCACTG 59 NA Rattus norvegicus 81 Crcp ENSRNOG00000000901 ENSRNOT00000001202,ENSRNOT00000079176 2 2 2 95 12 30144015 30144033 CAATGAAGAGCCACAAGCT 59 30126321 30136745 TCTCTTCCACCATCAGCTG 59 NA Rattus norvegicus 81 Vcl ENSRNOG00000010765 ENSRNOT00000015179,ENSRNOT00000085126 2 2 2 80 15 3477688 3477706 TACAACTCCCATCAAGCTG 57 3473841 3477646 CTCTCGTCAAATACCTCTTCC 58 NA Rattus norvegicus 81 AABR07006774.1 ENSRNOG00000050417 ENSRNOT00000075515 3 1 1 89 1 257727286 257727307 GAAGACATAACATCAGAGAAGC 57 257727357 257729180 AGAAGCAAAGACCTGAGTC 57 NA Rattus norvegicus 81 RGD1304694 ENSRNOG00000031269 ENSRNOT00000042070 2 1 1 80 7 125864926 125864944 GGACAGCAAAGGAGAAGAG 58 125863780 125864882 TCACTGAACACCTCTTCGA 58 NA Rattus norvegicus 81 RGD1565912 ENSRNOG00000029600 ENSRNOT00000043909 3 1 1 60 5 72321465 72321484 CGTGATCTCTGAGAAGTCCC 60 72321424 72321442 CTGCTCATCGATGTTGGTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ceacam6 ENSRNOG00000030331 ENSRNOT00000057600,ENSRNOT00000034553 1 2 2 80 1 81685452 81685475 CTGGAATCTACCACCTAAATATCC 58 81685511 81689070 TTAACAGAGGGTACACAAAGAC 58 NA Rattus norvegicus 81 Phlda1 ENSRNOG00000004019 ENSRNOT00000005361 3 1 1 156 7 54248591 54248609 TCATCCACACCAACTCCAG 59 54249121 54249141 ATAGTAATGCACTCTTCCCAC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Casc4 ENSRNOG00000016357 ENSRNOT00000044158 3 1 1 82 3 113855399 113860610 TTCCTGCTGCTTTAAAGAAGC 60 113860652 113860672 CTGTCCAGTTAGAAGATGGGA 59 NA Rattus norvegicus 81 Mtfmt ENSRNOG00000014602 ENSRNOT00000019671 1 1 1 80 8 70960911 70960929 CTGTGTCAAGTGGGAGGAG 60 70960971 70981044 GTTTGCAGTGGAACTATGTCC 60 NA Rattus norvegicus 81 Crygn ENSRNOG00000009226 ENSRNOT00000012285 3 1 1 138 4 6903267 6905955 TGTAGGCATGCATGGAGAG 60 6906057 6906075 CTTGATGGCGTTGACACAG 60 NA Rattus norvegicus 81 Lig3 ENSRNOG00000021815 ENSRNOT00000055982,ENSRNOT00000084076 2 2 2 80 10 70150133 70150152 CTGGCTGACATGATAAACCG 59 70150193 70150447 AGGCTCATATGTACCCTTCAC 59 NA Rattus norvegicus 81 Ednrb ENSRNOG00000010997 ENSRNOT00000014747 2 1 1 80 15 88014064 88014085 CTTCATACAGAAGGCTTCTGTG 59 88013873 88014025 GAAGCAACAGCTCGATATCTG 59 NA Rattus norvegicus 81 Btd ENSRNOG00000019656 ENSRNOT00000061063 3 1 1 135 16 7783725 7784376 CCAAAGCGATTTACGGTCTG 60 7784474 7784492 CCACGTAGTACTCAGCCTC 59 NA Rattus norvegicus 81 Thop1 ENSRNOG00000019924 ENSRNOT00000027045,ENSRNOT00000082486 2 2 2 80 7 11501687 11501705 AGTGAGGTGTACTCCATGG 58 11501486 11501644 GTAATCCATGCCAACCTTGG 59 NA Rattus norvegicus 81 Mos ENSRNOG00000008567 ENSRNOT00000011602 2 1 1 61 5 16746798 16746818 CCTTGGTACCATAATCATGGA 57 16746757 16746775 CACCGTAGATGACTTGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tcam1 ENSRNOG00000010929 ENSRNOT00000014867,ENSRNOT00000088697 1 2 2 80 10 94473744 94474696 GACATCACCATGTACCAACC 59 94474738 94474757 TGTGAAGGCTTCATCAATGG 59 NA Rattus norvegicus 81 Pcdhgb7 ENSRNOG00000039454 ENSRNOT00000060461 3 1 1 60 18 30901705 30901723 CTCAAGTCAGAGCATGGGA 59 30901746 30901765 ATGATGGAGTAGGAGACGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncapd2 ENSRNOG00000055300 ENSRNOT00000083016 1 1 1 80 4 157701385 157704481 CCCAGCTTAGAGCATTTCAG 59 157701324 157701345 TGCTGTAGATTGTATCGAAGTG 58 NA Rattus norvegicus 81 Lrrc42 ENSRNOG00000009983 ENSRNOT00000013575 1 1 1 80 5 126843361 126843379 TATCTTGTTGCTGGCTTGG 58 126842324 126843317 GGAGCTGAGTTACACTGGA 59 NA Rattus norvegicus 81 Scn2b ENSRNOG00000016221 ENSRNOT00000021819 1 1 1 80 8 49426293 49426312 TATACCGTGAACCACAAGCA 60 49426354 49426604 CTGGAGGAACATCTCCTCTG 59 NA Rattus norvegicus 81 Mir879 ENSRNOG00000041321 ENSRNOT00000063074 2 1 1 60 4 21673688 21673709 TCTAGATCCAGAGGCTTATAGC 59 21673649 21673667 AAGCTTGAAGCCATAAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Spata33 ENSRNOG00000038239 ENSRNOT00000058216 2 1 1 88 19 56010231 56010331 AGAGAAGAAAGTTGAGGAGGA 58 56010381 56010399 ACTGCTTGGTCTCCTTCTC 59 NA Rattus norvegicus 81 Ctxn3 ENSRNOG00000022957 ENSRNOT00000037529 3 1 1 60 18 52550987 52551005 TCTAGACCCATATCGGAGC 58 52551029 52551047 CTCTAGACCTTCAAGCCCG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Upk3a ENSRNOG00000013593 ENSRNOT00000018365 1 1 1 80 7 125921239 125921257 TGTGCATGTTCGATAGCTC 58 125921300 125922237 AGGAGATAGCTGAGTCTACC 58 NA Rattus norvegicus 81 Tmem65 ENSRNOG00000008934 ENSRNOT00000064122 2 1 2 80 7 98679992 98680011 TTCTTCCACAATGCGATACC 58 98675865 98679949 TTCAATTTGGGTTCCTGCA 58 NA Rattus norvegicus 81 Creb3 ENSRNOG00000016452 ENSRNOT00000085311,ENSRNOT00000065909 3 2 2 90 5 59063817 59063835 AAAGTGGAGATTTGTGGGC 58 59063888 59063992 AATTCTTGCACGGAGTTCTC 59 NA Rattus norvegicus 81 Eed ENSRNOG00000017509 ENSRNOT00000024082 2 1 1 80 1 154212673 154215813 AGACGAGAATGACGATGCT 59 154212611 154212631 GCATTTGGTGTATTTGTGGGT 60 NA Rattus norvegicus 81 Unc45b ENSRNOG00000009466 ENSRNOT00000064625 1 1 1 80 10 70284573 70284592 ATGTTTGAGAACCATGACCA 58 70284633 70287079 CTCCTGAACCTCCTTATTGAG 58 NA Rattus norvegicus 81 Sorcs1 ENSRNOG00000011313 ENSRNOT00000015979 3 1 1 80 1 270001932 270001951 ACACTATCACGGTACAGGTC 59 269996371 270001890 AGCGGAATTCCTCGTATACC 60 NA Rattus norvegicus 81 Nubp1 ENSRNOG00000002574 ENSRNOT00000003479 3 1 1 80 10 5336610 5337103 GGTCTCCAGTGTATGTGGAG 60 5336549 5336567 AGATGACAGCATCATCCGG 60 NA Rattus norvegicus 81 Phf13 ENSRNOG00000009046 ENSRNOT00000012407 1 1 1 96 5 169164392 169166053 CTATCCGAAGGAGGAGCTC 59 169164314 169164332 AGAGAAACCAGTGTCCCAG 59 NA Rattus norvegicus 81 Phf13 ENSRNOG00000009046 ENSRNOT00000012407 2 1 1 97 5 169164392 169166053 CTATCCGAAGGAGGAGCTC 59 169164313 169164331 CAGAGAAACCAGTGTCCCA 59 NA Rattus norvegicus 81 LOC100911976 ENSRNOG00000047254 ENSRNOT00000071054,ENSRNOT00000071503 1 2 2 80 1 100709009 100709028 TCGATCAACTGGAAACAGTG 58 100709070 100710222 GAGGACCATCTGTCCTAGAG 58 NA Rattus norvegicus 81 Cnga1 ENSRNOG00000004778 ENSRNOT00000006469 1 1 1 80 14 38156631 38156653 GAAGAATCAGAGAATGAGGACTC 59 38156693 38158188 CAAGTAATGCTCCCTCTGG 58 NA Rattus norvegicus 81 A2ml1 ENSRNOG00000007247 ENSRNOT00000009557 3 1 1 80 4 161876614 161876635 GTGAAGAAGCAGAAATCAAACG 59 161874104 161876573 GTCACTGTCCTGAGACTCC 59 NA Rattus norvegicus 81 Cdh2 ENSRNOG00000015602 ENSRNOT00000021170 1 1 1 80 18 8179626 8179649 TAGACCCAGAAGATGATGTAAGAG 59 8161291 8179589 AGTCATAGTCCTGGTCTTCCT 60 NA Rattus norvegicus 81 Phc1 ENSRNOG00000015191 ENSRNOT00000020529 1 1 1 80 4 155098566 155098585 GCTTCCTACAAAGGCATCAC 59 155098266 155098526 GGTTCAGCTTTCTCTACAAGAC 59 NA Rattus norvegicus 81 Vars2 ENSRNOG00000000833 ENSRNOT00000091232 3 1 1 80 20 3598490 3598508 CAGAAGCAGCTTGATGACC 59 3598552 3598658 CTGGAGGGAGGAAATCCTC 59 NA Rattus norvegicus 81 Fam89a ENSRNOG00000019022 ENSRNOT00000025705 3 1 1 81 19 57503353 57514614 CAAGGAGATGGTTGGTCTC 58 57503290 57503308 GTACTCCTGAATGGACTCG 57 NA Rattus norvegicus 81 Dennd6b ENSRNOG00000029866 ENSRNOT00000088030,ENSRNOT00000051347 3 2 2 80 7 130167104 130167122 GGACCTACCTAAGCAGGTC 59 130166744 130167060 TAGGAGGTGTAGAGGCCTG 60 NA Rattus norvegicus 81 Psph ENSRNOG00000000925 ENSRNOT00000001228 3 1 1 81 12 30520621 30520640 CAGTCATCAGAGAAGAGGGA 58 30520684 30521459 GCTCTCCGTGTCATTTCAG 59 NA Rattus norvegicus 81 Sec24c ENSRNOG00000009042 ENSRNOT00000012270,ENSRNOT00000084350,ENSRNOT00000090352 1 3 3 80 15 4039969 4040178 TATCACCAGCTTATTGGATCAG 58 4039910 4039929 TGGATAACTGGAGCAAACAC 58 NA Rattus norvegicus 81 Senp1 ENSRNOG00000022260 ENSRNOT00000030943,ENSRNOT00000080056 3 2 2 82 7 139635519 139635542 GACTTTAGAAAGAAGAGTGTCACC 60 139633889 139635480 AGGTATTGCAAGAGGATCCTG 60 NA Rattus norvegicus 81 Psmd3 ENSRNOG00000028103 ENSRNOT00000039836 3 1 1 81 10 86608272 86608374 TCACCCAAGCTGTTAGGAC 59 86608416 86608437 CCATCTGTTTGAAACTTCTCCC 60 NA Rattus norvegicus 81 Cpne4 ENSRNOG00000026577 ENSRNOT00000016749 1 1 1 80 8 113572162 113572181 GCTCCCATCATTCAGAAGGT 60 113572222 113577372 CAGCAGGATGAAATATTGCGA 59 NA Rattus norvegicus 81 LOC606294 ENSRNOG00000000395 ENSRNOT00000000444 1 1 1 80 20 32193131 32196841 CCATGCAGGACAACATAGG 58 32193069 32193087 CTTCATCCAGCTCCTTCCT 59 NA Rattus norvegicus 81 Gabarapl1 ENSRNOG00000053362 ENSRNOT00000077356 1 1 1 80 4 163298979 163298999 GACGCCTTATTCTTCTTTGTC 57 163299039 163301648 CTCATGGTTGTCCTCATACAG 58 NA Rattus norvegicus 81 Uts2b ENSRNOG00000038512 ENSRNOT00000042650 3 1 1 80 11 76833858 76833876 CCTGGCTTTGTTGTCTGTG 59 76833917 76838369 GGAAATAACTCATGTCCTGAGC 59 NA Rattus norvegicus 81 Pax8 ENSRNOG00000026203 ENSRNOT00000031058,ENSRNOT00000086447 2 2 2 80 3 1542953 1542973 TGACACCTTCCAATACACCTC 60 1542412 1542911 AGGGTGAATGAGGATCTGC 59 NA Rattus norvegicus 81 RGD1308601 ENSRNOG00000017215 ENSRNOT00000038767 1 1 1 80 18 74037398 74037417 GCACAGTAATTCAGTAGGCG 59 74025908 74037355 GGATCCAAATGACCTGCCT 60 NA Rattus norvegicus 81 RGD1560436 ENSRNOG00000025065 ENSRNOT00000038013 1 1 1 80 5 142938616 142938772 AACCCTTGTGTCAGATATCCT 59 142938813 142938832 TCCAGATCTCCAGATACTGC 58 NA Rattus norvegicus 81 Keap1 ENSRNOG00000020878 ENSRNOT00000028360 2 1 1 82 8 22254275 22254294 CATAGATGGCCACATCTACG 58 22252727 22254231 CTCGATCTGGCTCATATCTC 57 NA Rattus norvegicus 81 AABR07015006.1 ENSRNOG00000021986 ENSRNOT00000032337 2 1 1 80 14 44790477 44790497 TGTGTCAAGAGAAGATTCTCG 58 44790537 44790561 GTGTCTTCTTTAATACCGCCA 59 NA Rattus norvegicus 81 AABR07015006.1 ENSRNOG00000021986 ENSRNOT00000032337 3 1 1 80 14 44791042 44791061 TGAAAGGAGGAAACTTTGGA 57 44791104 44791125 CACCTTGGTTTGGTTTAGC 57 NA Rattus norvegicus 81 Serpina12 ENSRNOG00000042634 ENSRNOT00000012960 3 1 1 107 6 127702789 127704646 TTTACTTTCAAGGCAGGTGG 58 127702701 127702719 TTTGGAACATCATGGGCAC 59 NA Rattus norvegicus 81 Arhgap19 ENSRNOG00000048166 ENSRNOT00000071417 3 1 1 80 1 261033386 261033405 TCTAGGAGAGTTACCAGAGC 58 261031206 261033344 TCAAACTGCATCAGATCAGC 59 NA Rattus norvegicus 81 Mcee ENSRNOG00000016327 ENSRNOT00000021884 3 1 1 86 1 125239752 125239770 AGTGATAGTCCGATCGCAG 59 125239818 125252403 TGCATTTATGTTGTCCACCTC 59 NA Rattus norvegicus 81 RGD1311345 ENSRNOG00000019232 ENSRNOT00000089138 1 1 2 96 17 6684640 6689007 GTGGTTTGAGGAGAAATGCTC 60 6689065 6689083 CAAGACAGTCCCGGATCAG 60 NA InUTR Rattus norvegicus 81 RGD1560028 ENSRNOG00000006782 ENSRNOT00000008947 1 1 1 93 4 96312639 96312658 CAAAGGGCTTTCACAATGCT 60 96320739 96326650 CATACTTAATCTCAAGTCTCTGCAC 60 NA Rattus norvegicus 81 Dnmt3b ENSRNOG00000010625 ENSRNOT00000090321,ENSRNOT00000015482 1 2 2 80 3 149152566 149152584 CCAGCACTTTAATCTGGCC 59 149152628 149153506 ACCATGGCTTTCTCCAGAG 59 NA Rattus norvegicus 81 Gzmc ENSRNOG00000045641 ENSRNOT00000075752 1 1 1 80 15 36450413 36450890 TGCAGAGGAAGATCAATGAC 58 36450352 36450371 CACAGGGATAATCTGCTGTG 59 NA Rattus norvegicus 81 Zc3h12a ENSRNOG00000009131 ENSRNOT00000012314 1 1 1 80 5 143114783 143114801 GCCATACAGACATCACCGT 60 143113803 143114739 TGTGCTGGTCTGTGATAGG 59 NA Rattus norvegicus 81 Mmp15 ENSRNOG00000012622 ENSRNOT00000017629 3 1 1 82 19 10082713 10084088 CTTCTTCAAAGGTAACCGCT 58 10082650 10082668 TACCATAGCTGCTCAGTGG 59 NA Rattus norvegicus 81 Vom1r19 ENSRNOG00000032996 ENSRNOT00000042702 2 1 1 60 1 61095809 61095827 GGTACAGCATATACACGCA 57 61095851 61095869 GGTAGCTTGATCCACACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC502618 ENSRNOG00000039210 ENSRNOT00000060011 1 1 1 80 3 14595095 14598797 GTGGGAAGCTACATTTGGT 58 14595033 14595051 GATGACCTTCTGGTTGACC 58 NA Rattus norvegicus 81 Npbwr1 ENSRNOG00000007640 ENSRNOT00000010032 1 1 1 60 5 13380639 13380660 ATCTCTTACTTCATCACCAGTC 57 13380680 13380699 CATAGAGGAAAGGGTTGAGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir181b2 ENSRNOG00000035563 ENSRNOT00000053686 1 1 1 60 3 23151467 23151486 TCAACATTCATTGCTGTCGG 59 23151507 23151527 TTGCATTCATTGACCAGTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gja10 ENSRNOG00000006478 ENSRNOT00000008469 2 1 1 60 5 47835912 47835931 CAGCCATCTCCTTGTTACTC 58 47835871 47835889 ATGATCTTCCTGATGCCGA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rnase10 ENSRNOG00000010261 ENSRNOT00000013619 2 1 1 60 15 27933419 27933438 ACAAAGAAATGGCAGTACCT 58 27933460 27933479 CCCACTTCATCTTCACTGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 B4galt6 ENSRNOG00000015895 ENSRNOT00000021764,ENSRNOT00000091696,ENSRNOT00000091557 3 3 3 80 18 15520978 15520996 TCAATGGCTTTCCCAATGC 59 15521036 15521239 TGTATCCAGAGTAGTGAACTCTG 59 NA Rattus norvegicus 81 Qtrt1 ENSRNOG00000007158 ENSRNOT00000010030 1 1 1 81 8 22451788 22452675 TGCCTGAAAGAGATGACCA 59 22452720 22452738 AGAACTGCTCCTTGCTCTC 59 NA Rattus norvegicus 81 Kif26a ENSRNOG00000013661 ENSRNOT00000018278,ENSRNOT00000086868 1 2 2 80 6 136749134 136749272 ATGTACCCTACAGGGACCA 59 136749315 136749334 CAATCATGGTGGTACAGCAG 59 NA Rattus norvegicus 81 Rbm8a ENSRNOG00000021215 ENSRNOT00000028807 1 1 1 105 2 198755367 198755685 GATGGTGACGAAAGCATCC 59 198755870 198755888 CATAATCTTCCCGCATCCG 59 NA Rattus norvegicus 81 LOC100912252 ENSRNOG00000042206 ENSRNOT00000068160 3 1 1 92 17 5359165 5359184 CTTCTCCTGTCTTCTGTTGC 59 5359239 5360014 TAGGAACTGCTTTCCTGGG 59 NA Rattus norvegicus 81 Olr1646 ENSRNOG00000053618 ENSRNOT00000081045 1 1 1 60 15 32925567 32925586 TTCCTCCTGACCTACTTCCT 59 32925526 32925547 CAAGGGTGATGAAGATGATGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hsd17b3 ENSRNOG00000019096 ENSRNOT00000025850 1 1 1 80 17 1579595 1580539 GCTCATGAAATCTTGGCGA 59 1579533 1579552 CAGGAGAAATCTTTGGGTGG 59 NA Rattus norvegicus 81 Chit1 ENSRNOG00000028072 ENSRNOT00000080768,ENSRNOT00000035658 1 2 2 81 13 50987628 50987646 TTGACTGGGAATACCCAGG 59 50987690 50987906 TTGGCCAAATCCTGTATCAG 58 NA Rattus norvegicus 81 Chit1 ENSRNOG00000028072 ENSRNOT00000080768,ENSRNOT00000035658 3 2 2 81 13 50993606 50993625 GGGATGACTTCAAAGGTTCC 59 50993669 50994200 GATGAAAGGCTCAGCTCCT 60 NA Rattus norvegicus 81 Olr713 ENSRNOG00000046126 ENSRNOT00000041870 1 1 1 60 3 78340558 78340576 TTCTACTGCCATCTTGCCC 60 78340516 78340539 GGAAATGGTCTTCTTATCACAGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Surf2 ENSRNOG00000005167 ENSRNOT00000006889 2 1 1 80 3 5467490 5467963 CCGTAAACTCAGGAAGAAGG 58 5468006 5468024 GAACTGAAGTTCTTGGGCT 58 NA Rattus norvegicus 81 Cdca4 ENSRNOG00000013898 ENSRNOT00000018596 3 1 1 141 6 137421115 137421133 GGTTTGAACGAAAGCTCCG 60 137398153 137421010 TAGCAAACATCCTGTCCGG 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 Mrps34 ENSRNOG00000015479 ENSRNOT00000021075 2 1 1 125 10 14257552 14257654 TTTCAAAGGGAAGAGTGAGG 58 14257742 14257760 AATCTGTCCTCTGCTTTCC 57 NA Rattus norvegicus 81 Vegfb ENSRNOG00000021156 ENSRNOT00000050891 1 1 1 80 1 222241077 222241287 CAAGTCCGAATGCAGATCC 59 222241015 222241033 ACATTGGCTGTGTTCTTCC 58 NA Rattus norvegicus 81 Thy1 ENSRNOG00000006604 ENSRNOT00000008685 2 1 1 80 8 48385609 48385627 GTGTGAACTTCGAGTCTCG 58 48385671 48386090 CACTTGACCAGCTTGTCTC 59 NA Rattus norvegicus 81 Adgrd1 ENSRNOG00000023536 ENSRNOT00000058586,ENSRNOT00000073105 3 2 2 80 12 31166570 31175508 CTTCCTTAACTTCAGCTCCG 58 31166509 31166528 ACTGAGTAGGTGAGGTTTCC 59 NA Rattus norvegicus 81 Cd164l2 ENSRNOG00000009505 ENSRNOT00000012626 1 1 1 90 5 151414689 151416250 CAAGTACGACAGGGAGTCC 60 151416304 151416322 CTCAGTACCAGCACAATGC 59 NA Rattus norvegicus 81 Atp13a3 ENSRNOG00000001724 ENSRNOT00000002350 3 1 1 82 11 73957899 73962705 GATGAAATGGAGATACATGGCT 58 73962746 73962766 AAACCACCAGTACAAATCACC 59 NA Rattus norvegicus 81 Ptpn7 ENSRNOG00000005807 ENSRNOT00000007833 1 1 1 80 13 51961073 51962446 GACCATCTTGCCAAATCCC 59 51962490 51962508 TTGGCATTGATGTAGTCGC 59 NA Rattus norvegicus 81 Cyb5rl ENSRNOG00000009148 ENSRNOT00000036072,ENSRNOT00000012201 2 2 2 80 5 126671246 126671265 TTGTCCGGTTTACACTACCT 59 126671306 126674103 CATCTACTACACCTCGTAGGA 58 NA Rattus norvegicus 81 Mfap3l ENSRNOG00000011775 ENSRNOT00000015759 1 1 1 84 16 32753180 32753201 TCATGTTACTCTACACATCCTG 57 32752409 32753138 GATCAAGGATCTAAGTTCCTGG 58 NA InUTR Rattus norvegicus 81 Sema5a ENSRNOG00000011977 ENSRNOT00000016506,ENSRNOT00000085094 3 2 2 80 2 85579411 85579430 AGAATGCTGTGGATTTCTCG 58 85579470 85594596 TGAAGAGATAGTTTCTTGCTCC 58 NA Rattus norvegicus 81 Olr472 ENSRNOG00000009670 ENSRNOT00000012814 1 1 1 60 3 73352959 73352979 GATTTAACCTCTCCCTCTCCC 59 73352998 73353019 GCAGGAAAGATATACAGGTAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kcnq3 ENSRNOG00000005206 ENSRNOT00000006930,ENSRNOT00000074573 3 2 2 80 7 106751222 106751241 TGCTTCGAATGGATAGGAGG 59 106747903 106751180 CGGTGATGAGTTCTTTGCTG 60 NA Rattus norvegicus 81 Yap1 ENSRNOG00000005933 ENSRNOT00000031189 3 1 5 88 8 6152357 6152375 GCAGGAGTTATTTCGGCAG 59 6140371 6140687 AGCTAATTCCCGCTCTGAC 60 NA Rattus norvegicus 81 Olfm1 ENSRNOG00000009862 ENSRNOT00000065953 3 1 2 87 3 6780891 6780909 GAACCAGATGAAAGGCCTG 59 6780960 6782361 AAGTTAGCCCTTGAACTGC 58 NA InUTR Rattus norvegicus 81 Rhoj ENSRNOG00000021919 ENSRNOT00000031979 3 1 1 87 6 98356948 98356966 ACAACGTTCAGGAGGAGTG 60 98357017 98358944 CGGAGATCAATCTGGGTCC 60 NA Rattus norvegicus 81 Tbcd ENSRNOG00000036658 ENSRNOT00000054913 3 1 1 80 10 110782017 110782038 TACTACTTCTCCCATGGATGTG 59 110782079 110782725 ACTGTCTGGCAAATTCTCG 58 NA Rattus norvegicus 81 Heca ENSRNOG00000060972 ENSRNOT00000081259 3 1 1 80 1 13049652 13049673 GATGGAACTCTGTTCTTAAGCC 59 13043280 13049612 CATGAGTCTCCCTTGAAGGT 59 NA Rattus norvegicus 81 Pgrmc1 ENSRNOG00000012786 ENSRNOT00000017101 2 1 2 80 X 123209913 123209932 CCTTTCTGACCTCACTCCTG 60 123209970 123212618 GTGATGGTACTTGAAGGTAAAGTG 60 NA Rattus norvegicus 81 Syna ENSRNOG00000050672 ENSRNOT00000074788 1 1 1 60 12 25161156 25161174 GAAGCCTTTCCATCAGAGC 59 25161198 25165167 TTATGGAAGCTGGACCGAC 60 NA DesignRelaxed, InUTR Rattus norvegicus 81 Coa4 ENSRNOG00000025385 ENSRNOT00000038764 2 1 1 83 1 165549345 165549365 AGAACTTACTGCCTACAGACC 59 165549410 165551294 TGACATCTTGAGGAACCCG 59 NA InUTR Rattus norvegicus 81 Dcun1d4 ENSRNOG00000002152 ENSRNOT00000065458,ENSRNOT00000081087 1 2 2 80 14 37214457 37216375 TCACCAATTCTTAGAGCAATCG 59 37214398 37214416 ATTGTCCTGCTGAACTCCA 59 NA Rattus norvegicus 81 Tex11 ENSRNOG00000025672 ENSRNOT00000041731 3 1 1 80 X 70923199 70923217 CAGTGAACCTGTGGAACTG 58 70910104 70923156 TGTAACACAGTTTAGCTGCC 59 NA Rattus norvegicus 81 Sqrdl ENSRNOG00000000172 ENSRNOT00000068129 1 1 2 112 3 114918609 114918627 ATGAGGTGCTGGTACTTGG 59 114918703 114920906 GAAATGCCTCTCACTGGGT 60 NA Rattus norvegicus 81 LOC100911779 ENSRNOG00000017230 ENSRNOT00000023215 1 1 1 80 1 263503375 263506439 TAGTCTGTTTCCAGGGTCTG 59 263503314 263503334 GAGGGATGTCATAGGACTCTG 59 NA Rattus norvegicus 81 Vom1r56 ENSRNOG00000033061 ENSRNOT00000040738 1 1 1 60 1 66664377 66664399 GCTCCTGGCTTATTAACATACTC 59 66664417 66664437 GATTTGGCTACTACCATTGGA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vom2r65 ENSRNOG00000047177 ENSRNOT00000033032 2 1 1 80 14 221423 222822 AGGAGAAACATTGGTTCCCT 59 222864 222883 GCTGTTTGTTTCTGATGGCT 60 NA Rattus norvegicus 81 Eif2ak3 ENSRNOG00000006069 ENSRNOT00000008451 2 1 1 80 4 98680086 98680107 GATGATGTTGTTCTGGTTGGAG 60 98680145 98681920 ACAGATATACCTCAGCTTTCCA 59 NA Rattus norvegicus 81 Eif2ak3 ENSRNOG00000006069 ENSRNOT00000008451 3 1 1 80 4 98680087 98680107 ATGATGTTGTTCTGGTTGGAG 59 98680146 98681921 AACAGATATACCTCAGCTTTCC 58 NA Rattus norvegicus 81 RT1-Ba ENSRNOG00000000451 ENSRNOT00000091096 1 1 2 82 20 4067219 4067664 CTACCAACAAGGTTCCTGAG 58 4067156 4067174 TACAAAGCAGATGAGGGTG 57 NA Rattus norvegicus 81 Snap29 ENSRNOG00000001867 ENSRNOT00000002550 1 1 1 80 11 87839399 87839419 CAAATCCAAACCAGTAGAGCC 59 87834890 87839359 ATGGCTTCTTTCAATCTGCTG 59 NA Rattus norvegicus 81 Olr1373 ENSRNOG00000039760 ENSRNOT00000060989 1 1 1 60 10 12603245 12603264 GAACCCTTTCATCTACAGCC 58 12603286 12603305 GAGCACTTTCCTTAAAGCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspan33 ENSRNOG00000007900 ENSRNOT00000010989 3 1 1 80 4 56996951 56996970 TCTCATGTTCCTTCTCACCT 58 56997013 56997352 CAGAGGGAGAAAGTCTGCA 59 NA Rattus norvegicus 81 Ddx59 ENSRNOG00000042451 ENSRNOT00000042846,ENSRNOT00000043798 2 2 2 81 13 53318590 53319239 GATACTGAAGGGACTACTGGA 58 53319281 53319300 GTTGACCAAATCTAGGCCTC 58 NA Rattus norvegicus 81 Myh8 ENSRNOG00000050042 ENSRNOT00000057260 3 1 1 80 10 53821148 53821167 TGATGACCCACCTTCATGAG 60 53821206 53821314 CTGAGTAGGTGTAGATCATCCAG 60 NA Rattus norvegicus 81 Scyl1 ENSRNOG00000023668 ENSRNOT00000032387 1 1 1 80 1 221128804 221128995 TATATCGATGGGTTGGAGACAG 59 221128745 221128763 TGCCTTGAGGTATGTTCCC 59 NA Rattus norvegicus 81 Rabac1 ENSRNOG00000020233 ENSRNOT00000027435 2 1 1 74 1 81844129 81845856 CTAAGCTTGTGCTCTTTGGC 60 81844074 81844092 AAGGGAAAGAGACACCACC 59 NA DesignNoJunction Rattus norvegicus 81 LOC100362216 ENSRNOG00000017557 ENSRNOT00000023592 2 1 1 85 9 93064618 93068000 CAGTTCAAGAGCACCTCCA 60 93068049 93068067 ATTCCCACGGTCTTCACAG 60 NA Rattus norvegicus 81 Fbxo8 ENSRNOG00000010502 ENSRNOT00000084469,ENSRNOT00000014015 3 2 2 80 16 37133283 37133303 GTTCTCACATAGGTTCTGTGC 59 37132171 37133244 CACAGTACATAGACAGCATCTG 59 NA Rattus norvegicus 81 Haghl ENSRNOG00000019612 ENSRNOT00000026536 1 1 1 80 10 15153443 15153462 ATGATGTACCTACTGTGCCT 58 15153063 15153400 GGACTGGATCCTCTGTCAC 59 NA Rattus norvegicus 81 Haghl ENSRNOG00000019612 ENSRNOT00000026536 2 1 1 80 10 15154046 15154145 CCCTCTTCTCTGGAGATGC 59 15153984 15154002 AGCTCTGGTACATCTGCTG 59 NA Rattus norvegicus 81 Agtpbp1 ENSRNOG00000018651 ENSRNOT00000025381,ENSRNOT00000091370 2 2 2 80 17 5604205 5604224 GGGAAATTGGAGTTCAAAGG 57 5604264 5606352 TCTGTAAACCCTTGTATCTACC 57 NA Rattus norvegicus 81 LOC100362150 ENSRNOG00000047658 ENSRNOT00000042220 1 1 1 60 11 85042371 85042391 GTTTCTTGGGTTCTTGTTGCT 60 85042523 85042542 CTGGGTCATCTGAATGTCAC 58 NA DesignNoJunction Rattus norvegicus 81 Hpgd ENSRNOG00000010610 ENSRNOT00000014229 2 1 1 80 16 37460912 37474132 TTCTTCAATAGCAGGGCTC 57 37460850 37460868 CGTGTGAATCCGATTATGC 57 NA Rattus norvegicus 81 Nadsyn1 ENSRNOG00000020736 ENSRNOT00000028175 1 1 1 80 1 216986204 216987891 TTGACAACCAGGTTGTACAG 58 216986143 216986162 ATGGCTCTTTGAAATGCTCC 59 NA Rattus norvegicus 81 Gbp3 ENSRNOG00000036885 ENSRNOT00000040856 1 1 1 80 2 248453716 248455176 GAGTGAAGGCAAGTGAGGT 60 248453654 248453674 CTTTGTCTGACTGCAAGATGG 60 NA Rattus norvegicus 81 Skor2 ENSRNOG00000018006 ENSRNOT00000031993 1 1 1 102 18 73161548 73161567 GCAAAGGATGACAACTTCTC 57 73162143 73175690 TGTGTTCACCTGATCTTTCTC 58 NA Rattus norvegicus 81 Pck2 ENSRNOG00000018536 ENSRNOT00000025260 3 1 1 80 15 34218984 34219709 CCAAGTATGAGAACTGCTGG 58 34219750 34219770 AAGTTACAATCACCGTCTTGC 59 NA Rattus norvegicus 81 Tsnax ENSRNOG00000049784 ENSRNOT00000071827 3 1 1 80 19 57772516 57772534 TTGTGAAACTAAGCCGGGA 59 57772576 57776960 TATCAGGAGCACTTGTGATCC 60 NA Rattus norvegicus 81 Mettl23 ENSRNOG00000000249 ENSRNOT00000000266 1 1 1 80 10 105791969 105791989 CAAAGGACACTTTGTCATTGC 59 105792030 105792122 TGCTTTCAAAGTCTTCTGGT 58 NA Rattus norvegicus 81 Zfp259 ENSRNOG00000018481 ENSRNOT00000025149 3 1 1 80 8 50566278 50566459 AAGACCTTAGAAACGAAGTGC 59 50566499 50566519 CAAGCTTCATGTTGGTCTGAG 60 NA Rattus norvegicus 81 Cyp2c23 ENSRNOG00000013291 ENSRNOT00000017840 2 1 1 80 1 263790549 263790568 AACAAGACGTTCCTCAACCT 60 263790005 263790506 GTTGTACATCTGGCACCAC 59 NA Rattus norvegicus 81 Cyp2c23 ENSRNOG00000013291 ENSRNOT00000017840 3 1 1 80 1 263790543 263790563 GACGTTCCTCAACCTTATGGA 60 263790000 263790503 CAAAGGTTGTACATCTGGCAC 60 NA Rattus norvegicus 81 Mir223 ENSRNOG00000035505 ENSRNOT00000053628 1 1 1 60 X 65367828 65367848 GTTACGCTCCGTGTATTTGAC 60 65367868 65367888 CAAACTGACACTCTACCACAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pknox2 ENSRNOG00000028856 ENSRNOT00000076540 1 1 5 60 8 39370496 39378905 TTCCAGCATCTCATGGGTG 60 39370454 39370474 CTTGCCATGTTTAGAATGCTC 58 NA DesignRelaxed Rattus norvegicus 81 Olr901 ENSRNOG00000054865 ENSRNOT00000071164 3 1 1 60 7 5325039 5325060 CATGTCCTAGAAATGATGTCCT 58 5325077 5325099 GTACCAGTGTAACTACAAGTGTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp52 ENSRNOG00000042826 ENSRNOT00000050119 3 1 1 80 1 61421095 61424170 GGTCTCTGTGGAGAACTACTG 60 61424209 61424230 TCATTACACTGACAAGACTCCT 59 NA Rattus norvegicus 81 Gnpda2 ENSRNOG00000002177 ENSRNOT00000002992 3 1 1 89 14 62638546 62638564 CTGATTTGCAGGCAGAGTG 59 62633515 62638494 CATCTGGACCTATTCCTCCA 58 NA Rattus norvegicus 81 Mpeg1 ENSRNOG00000021084 ENSRNOT00000028622 1 1 1 80 1 228726894 228726912 GGATCCTCAGACCAACCAG 60 228726955 228726975 ATTACCGTCCCATGGATGAC 60 NA Rattus norvegicus 81 Eif2s1 ENSRNOG00000009432 ENSRNOT00000013375 1 1 1 80 6 102064009 102064030 TTGATGACAAGTACAAGAGACC 58 102064067 102067899 TATCCAAGATAGATGGGTCTGAG 59 NA Rattus norvegicus 81 Bcl2l2 ENSRNOG00000015732 ENSRNOT00000020409 2 1 1 163 15 33544400 33544703 CTTCTTCCTGACTCGGCTC 60 33545291 33545311 TACAAAGTCAGCCACTAGAGC 60 NA InUTR Rattus norvegicus 81 Myo5a ENSRNOG00000058866 ENSRNOT00000082288,ENSRNOT00000079535,ENSRNOT00000091789 3 3 3 80 8 82099970 82104549 GGAGATGACAGAAACTATGGA 57 82104590 82104609 CTCAGCCTCTCATCATTCAG 58 NA Rattus norvegicus 81 Cenpj ENSRNOG00000022597 ENSRNOT00000065764 2 1 1 80 15 36775739 36775758 TCTTCGAGAAGTACACAGCA 59 36758145 36775696 TGGAACCATTCAGAGCCTG 60 NA Rattus norvegicus 81 Rdh14 ENSRNOG00000039551 ENSRNOT00000006020 3 1 1 80 6 36107753 36111051 AAGAACTGCTACAGGAGGAG 59 36111093 36111112 CAGTCTTCGTATATGGGCAC 58 NA Rattus norvegicus 81 Ntrk2 ENSRNOG00000018839 ENSRNOT00000082611,ENSRNOT00000042145,ENSRNOT00000090914 3 3 3 80 17 6189448 6203238 ATTCCCAATTGTGGTCTGC 58 6189386 6189405 GGAAATGGTCACAGACTTCC 59 NA Rattus norvegicus 81 Hltf ENSRNOG00000000082 ENSRNOT00000064828,ENSRNOT00000090912 3 2 2 80 2 104869956 104869976 CTTACCAACTTTGATGATGGC 58 104870016 104872160 CTCGTCCTTGTATTCCTTTCC 59 NA Rattus norvegicus 81 Fam71f1 ENSRNOG00000006132 ENSRNOT00000041207 3 1 1 80 4 56605822 56609843 AGAAACAGTACAGTTCCAGCA 60 56613052 56613070 TGTCTTCACAGGGAGTAGC 59 NA Rattus norvegicus 81 Psmb1 ENSRNOG00000001488 ENSRNOT00000002037 1 1 1 80 1 57472360 57482659 GACTTGATGAAGAAGGAAAGGG 59 57472301 57472319 CTCCGGCTTTGAAAGAGTC 59 NA Rattus norvegicus 81 Ammecr1l ENSRNOG00000016250 ENSRNOT00000061074 1 1 1 80 18 24540707 24540725 CCACCAACACTTACCATCG 59 24540769 24541368 CCTTCTTCCAATACCGGAC 58 NA Rattus norvegicus 81 AABR07054968.1 ENSRNOG00000059891 ENSRNOT00000086626 2 1 1 96 3 175925150 175925168 TTCAGCCAGAATATTGGGC 58 175925228 175926090 GAATCTCAGACTCGTGCAG 58 NA Rattus norvegicus 81 Mapre2 ENSRNOG00000049681 ENSRNOT00000075444 3 1 1 97 18 15764828 15770188 CAACGAACAGGTTCATTCAC 58 15770248 15770266 GGCATAGCAGCTCAATCTC 59 NA Rattus norvegicus 81 Coasy ENSRNOG00000019918 ENSRNOT00000027061 3 1 1 80 10 88995661 88995848 CTGTGGCTAAGGGAAAGAC 58 88995891 88995910 CCTCGTGTACCATATTCTGC 58 NA Rattus norvegicus 81 Calr4 ENSRNOG00000037710 ENSRNOT00000068697,ENSRNOT00000057216 1 2 2 80 5 128881964 128885048 GAGATAAAGGTCTCCAGACCA 59 128885088 128885108 CATTCTCATTGCTGAATGGCT 59 NA Rattus norvegicus 81 Olr984 ENSRNOG00000049589 ENSRNOT00000047489 3 1 1 60 7 4292998 4293016 ACTGCCATGTCCTATGACC 59 4292956 4292975 TGATGGTTGTGTAGTGAAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hs2st1 ENSRNOG00000012549 ENSRNOT00000016872 1 1 1 80 2 250471310 250471329 AGACTTCATCATGCTCCTGG 60 250470412 250471272 GATTTCTTTCCTGTACGATAGAGG 59 NA Rattus norvegicus 81 Olr1214 ENSRNOG00000051323 ENSRNOT00000047933 1 1 1 60 8 40691925 40691943 TTACCAGGTCACCATGTCC 59 40691967 40691985 CATCACATACACTCCCACC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir363 ENSRNOG00000036273 ENSRNOT00000054396 2 1 1 64 X 140117160 140117178 TGTTATCGGGTGGATCACG 60 140117114 140117133 TGGATACCGTGCAATTTCTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sla ENSRNOG00000056714 ENSRNOT00000087116,ENSRNOT00000088752 3 2 2 80 7 107593120 107595634 AGAGTGTATCATGGCTGGC 60 107593058 107593076 AATCTTTGTGTCTGGCAGC 59 NA Rattus norvegicus 81 Epc2 ENSRNOG00000029447 ENSRNOT00000051953 3 1 1 80 3 33726855 33726874 TCACAACACTTACAGTTCCA 57 33726917 33727036 GGTCCATTATGACCCTTCC 57 NA Rattus norvegicus 81 Clec1b ENSRNOG00000057335 ENSRNOT00000082537 3 1 1 80 4 163165367 163165387 GTTTGACGGCTTTAATTCTGC 59 163165429 163166737 GTGTGACTGACATGATCCC 58 NA Rattus norvegicus 81 Fhod3 ENSRNOG00000027230 ENSRNOT00000068139,ENSRNOT00000041961 2 2 2 80 18 17160107 17175981 CTTGTTGGCTCAAAGTTCC 57 17176023 17176043 ATTGGACTCAGAATACTCCAC 57 NA Rattus norvegicus 81 AABR07030977.1 ENSRNOG00000046767 ENSRNOT00000034630 3 1 1 81 10 111387973 111389218 GAAACATTGGTTCCCTCCTC 59 111389262 111389280 AGTCGGCTGTTTGTTTCTG 59 NA Rattus norvegicus 81 Olr1610 ENSRNOG00000047419 ENSRNOT00000016721 1 1 1 60 15 27076763 27076782 TGCAGGCCTTTACATTACTC 58 27076722 27076741 CCAACAACATCACATAGCAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Wfikkn1 ENSRNOG00000021578 ENSRNOT00000060156 3 1 1 168 10 15245694 15245712 CTCATCCATCTGACCTCGG 59 15244874 15244892 CATTGGTGCAGCACTTCTC 60 NA DesignNoJunction Rattus norvegicus 81 Gcm1 ENSRNOG00000007932 ENSRNOT00000010583 3 1 1 80 8 85357584 85357603 GAACTGGACGACTTTGATCC 59 85357646 85363691 CTTCACATTCTGAGGCAGC 59 NA Rattus norvegicus 81 Olr1540 ENSRNOG00000049405 ENSRNOT00000060892 2 1 1 60 11 43330460 43330481 CTCTTCTCTTCATGTATCTGCT 58 43330501 43330520 TCCATCATGTCTTCATCCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC114343.2 ENSRNOG00000052100 ENSRNOT00000090835 3 1 1 60 15 28091636 28091655 ACAGCTATGTTCAGTTCCAC 58 28091595 28091615 TTCATGTCCTCTATGCTGTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC691196 ENSRNOG00000037027 ENSRNOT00000040763 1 1 1 106 5 166295435 166327430 CAGTCTGGATGTTTACCATGG 59 166294256 166294274 TAACAGGATGACGGTGGTC 59 NA Rattus norvegicus 81 Zfp697 ENSRNOG00000048181 ENSRNOT00000074666 2 1 1 116 2 200572728 200575244 CCACTGTCTGTTCAGAGGG 60 200575323 200575342 CAGATTCTGACAGTCCTGGG 60 NA Rattus norvegicus 81 Fgd5 ENSRNOG00000010213 ENSRNOT00000051022 3 1 1 80 4 123923671 123923689 CCTTTGTCATCGCTCAGGA 60 123923821 123935433 CATGGAAATCCAGGCTTAAGTG 60 NA Rattus norvegicus 81 AABR07055747.1 ENSRNOG00000030254 ENSRNOT00000041966 2 1 1 80 7 8883047 8883065 CTCACATATGTGCTGAGCG 59 8882983 8883004 ATACATGGTCTTCAGGTGGG 59 NA Rattus norvegicus 81 Olr1569 ENSRNOG00000050293 ENSRNOT00000057990 2 1 1 60 11 85313487 85313508 ACCATTTCTTCTGTGATGTTCC 59 85313448 85313468 TAAACCCAAGTGTCCATACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gtsf1 ENSRNOG00000036831 ENSRNOT00000055275 1 1 1 80 7 145037773 145037793 AACCTTGGACAAGAGACTCTG 60 145037247 145037733 TTCCCACAAGTCTTTATCCCA 59 NA Rattus norvegicus 81 Ccdc86 ENSRNOG00000020925 ENSRNOT00000028405 3 1 1 84 1 227001366 227001384 GGAGCTTCCTGTAATTCCG 58 226998671 227001318 AACCATCTGGGAGAACCTC 59 NA Rattus norvegicus 81 Olr1553 ENSRNOG00000046886 ENSRNOT00000060877 3 1 1 60 11 43561647 43561666 TATCATCCACAGTGACACCA 59 43561606 43561625 GAAATCACCTTGCCCTTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Dctn5 ENSRNOG00000018048 ENSRNOT00000024367 3 1 1 83 1 192090508 192090527 GTAAGAGTTGGACGTCACTG 58 192090573 192095132 GAATGCAACACCTTTGCTG 58 NA Rattus norvegicus 81 Spata31a5 ENSRNOG00000018202 ENSRNOT00000024504 2 1 1 81 17 2421261 2423288 AATTTCACCAGGAAGCCTC 58 2421198 2421219 CATCGTTCCTACAATGATTCCT 58 NA Rattus norvegicus 81 Tas2r108 ENSRNOG00000012195 ENSRNOT00000016232 1 1 1 60 4 68657644 68657662 TCCATATTCAATCGCTGCC 58 68657686 68657704 GGCTCTCAGATTCTTCCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Stat5b ENSRNOG00000019075 ENSRNOT00000026354,ENSRNOT00000081247 2 2 2 80 10 88699367 88699464 CACTTCAGAAACATGTCCCT 58 88699306 88699324 TGTGAACTTCTCTTCCGTG 57 NA Rattus norvegicus 81 Dr1 ENSRNOG00000000070 ENSRNOT00000000080 3 1 1 83 14 1631592 1631610 ATATCTTCCGAAGCCAACG 58 1625631 1631547 ACTTTCTAGTGCTTGGATGAC 58 NA Rattus norvegicus 81 Med16 ENSRNOG00000011315 ENSRNOT00000080089,ENSRNOT00000015257 2 2 2 98 7 12629114 12629584 TCACCGATGTTGACATCGA 59 12629646 12629664 ATTGTAGCAACTGCTGCAG 59 NA Rattus norvegicus 81 Zdhhc9 ENSRNOG00000004581 ENSRNOT00000006484 1 1 1 80 X 135015053 135015071 AACATCGTCTATGTGGCCC 60 135013295 135014089 TTCCAGAACAGTTCCAGGAG 59 NA Rattus norvegicus 81 Zdhhc9 ENSRNOG00000004581 ENSRNOT00000006484 2 1 1 80 X 135011268 135013209 ATGAAGACATCAAAGGATCGTG 59 135011209 135011230 AGCAGTTCTTCACAATGTTTCC 60 NA Rattus norvegicus 81 LOC100912481 ENSRNOG00000046950 ENSRNOT00000057382,ENSRNOT00000086607 2 2 2 80 4 24632972 24633374 ATCTCGATCTAGGCCTTCC 58 24633415 24633436 CACTGTCATTTAATCCTTGCAC 58 NA Rattus norvegicus 81 Gtf2h3 ENSRNOG00000001035 ENSRNOT00000001368 2 1 1 80 12 37438676 37438696 GGAAATATGAGCTGTTGACAG 57 37434622 37438634 CCTTGATGTCACTCTTGGT 57 NA Rattus norvegicus 81 AABR07065693.1 ENSRNOG00000045786 ENSRNOT00000070810 1 1 1 116 6 139412500 139412518 AATCCCGACTGAGCATCAG 60 139412596 139412710 TCTGAAGTGATCTGTGTCTGG 60 NA Rattus norvegicus 81 Cfap70 ENSRNOG00000007046 ENSRNOT00000035345 1 1 1 80 15 4302228 4302247 CTGACGAGTTCATTGTTGGG 59 4302287 4304832 GGTTCCTTAATTCTCTGTCCTC 58 NA Rattus norvegicus 81 Lrrc17 ENSRNOG00000012817 ENSRNOT00000017103 2 1 1 81 4 10120120 10120138 GGAAGCAGACTCCACTCTG 60 10113645 10120078 GACTTTCTTCAGCTCTTTCCTC 59 NA Rattus norvegicus 81 Usp49 ENSRNOG00000013866 ENSRNOT00000018550 2 1 1 80 9 15321449 15322193 AAGATTCAGGTGGTCTGGC 60 15321387 15321406 GGTTCCATGGTTAACACCTG 59 NA Rattus norvegicus 81 LOC498063 ENSRNOG00000001986 ENSRNOT00000002718 2 1 1 60 11 32469368 32469389 GGGAAGACTTTAGTGATAACGG 59 32469329 32469348 CCAGCATGTAGAATACACCA 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ly49i3 ENSRNOG00000046046 ENSRNOT00000050861 3 1 1 80 4 162627464 162637357 TTGAATTGTGATTTGGTGGC 58 162627403 162627424 ATCATGTAGACCTGTCATACTG 57 NA Rattus norvegicus 81 Mrpl18 ENSRNOG00000014582 ENSRNOT00000020064 3 1 1 86 1 48034291 48034309 TGGAGCTCTTAGGTGTAGC 59 48034358 48036256 TTACAACTCTCAACCTGTGC 58 NA Rattus norvegicus 81 LOC100911564 ENSRNOG00000048623 ENSRNOT00000072812 2 1 1 80 9 16315881 16315900 AGATGCTGAAATACGCACTG 59 16315943 16316517 TGGCTTCTTCAATGACCCA 59 NA Rattus norvegicus 81 AABR07049728.1 ENSRNOG00000033231 ENSRNOT00000044921 1 1 1 82 5 134444686 134444706 CCAATGTCAGATCTGCTACAC 59 134444750 134444967 TTCTTTCTTTCGGGTGGTG 58 NA Rattus norvegicus 81 Olr820 ENSRNOG00000046810 ENSRNOT00000047359 3 1 1 60 4 72656246 72656265 ATGGGACTATCCTTGCACTG 60 72656286 72656306 AAGAAGTACATGGGAGTGTGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zcchc11 ENSRNOG00000052062 ENSRNOT00000079161 1 1 1 80 5 128147832 128147853 GAAGGCATTTATCAATGGAAGG 58 128147891 128153408 TCAAAGAAGTACTCAGCTTCTC 58 NA Rattus norvegicus 81 Scarf2 ENSRNOG00000000288 ENSRNOT00000000313 2 1 1 112 11 87728702 87728720 ACTTACGGTGAGGACTGTG 59 87728795 87729245 ACATTACAGTGAGGTCCGTG 60 NA Rattus norvegicus 81 LOC690045 ENSRNOG00000061895 ENSRNOT00000081854 2 1 4 80 4 163757493 163757513 GGATCCAATGTAAACAAGCCT 59 163754532 163757453 GAAGGAACTTCAGTTCATCGT 58 NA Rattus norvegicus 81 LOC690045 ENSRNOG00000061895 ENSRNOT00000081854 3 1 4 80 4 163757491 163757511 ATCCAATGTAAACAAGCCTGC 60 163754530 163757452 CTGAAGGAACTTCAGTTCATCG 59 NA Rattus norvegicus 81 Cct2 ENSRNOG00000021317 ENSRNOT00000037946 2 1 1 80 7 60120359 60120379 CAGGATGATGAAGTTGGTGAC 59 60120204 60120319 AATTAAAGATTCCGCTTCCCG 59 NA Rattus norvegicus 81 Klhl35 ENSRNOG00000017365 ENSRNOT00000023386 3 1 1 83 1 164427557 164428121 TTACGTTTCTGGAGGTCAC 57 164428168 164428186 ATTGAGGCAACCTTGATCC 58 NA Rattus norvegicus 81 Ogn ENSRNOG00000047786 ENSRNOT00000072490 2 1 1 105 17 15456943 15456961 TGATGCTGTACCACCACTG 60 15454289 15456877 TCTTAAGTTAGGCATGTCTGCA 60 NA Rattus norvegicus 81 Fam111a ENSRNOG00000012067 ENSRNOT00000016152 2 1 1 81 1 229013596 229013615 CGCAAATCACAGAAGATCCC 59 229013659 229016611 GCTCTTCTTTGGGAACCTG 59 NA Rattus norvegicus 81 Hip1r ENSRNOG00000001091 ENSRNOT00000034264 2 1 1 80 12 38031184 38031390 ATGAAGGATGACAGGGACC 59 38031122 38031142 CTTAATCTTCTCCAGCTCAGC 59 NA Rattus norvegicus 81 Ppfia2 ENSRNOG00000004353 ENSRNOT00000005862 2 1 1 80 7 49041144 49041164 TCAGAAACATTACCAGCTGGA 60 49041205 49042407 TGATGAAGCAACATCTGTCG 59 NA Rattus norvegicus 81 LOC500331 ENSRNOG00000030522 ENSRNOT00000090431,ENSRNOT00000049620,ENSRNOT00000043078 1 3 3 80 4 162086213 162086805 GAGGAGCTGAATTTCCTAAAGAG 59 162086844 162086863 AGGGTCTGCTGATGATTCTC 59 NA Rattus norvegicus 81 P4ha1 ENSRNOG00000050655 ENSRNOT00000070897 3 1 1 80 20 28940553 28940574 GTTAATGAAACGTCTGAACACC 58 28940613 28943530 TTAGAGATGAAGCCATCTGAC 57 NA Rattus norvegicus 81 Psmc3ip ENSRNOG00000020022 ENSRNOT00000027159 3 1 1 85 10 89003463 89003482 TCTGGATGCCAGTATCATGG 59 89002951 89003415 ATTCCTTCAGCTCAGCCTC 60 NA Rattus norvegicus 81 Ptk2 ENSRNOG00000007916 ENSRNOT00000011219,ENSRNOT00000079599 3 2 2 80 7 114504742 114504760 AACTTGGACGCTGTATTGG 58 114499143 114504698 CCAAAGCTGGATTCTCTGG 58 NA Rattus norvegicus 81 LOC687631 ENSRNOG00000047532 ENSRNOT00000071454 2 1 1 110 20 11597188 11597206 CCAGCAGTCTAGCTGTGAG 60 11597280 11597298 GATTCAGAGCAGATGGGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07000534.1 ENSRNOG00000048762 ENSRNOT00000072759 3 1 1 67 1 16987937 16989115 AGAGACTTTAACCAAGCAAGTG 59 16987891 16987911 CAGTTTCTTTCTTCAGAGGCT 58 NA DesignNoJunction Rattus norvegicus 81 Mir3546 ENSRNOG00000035583 ENSRNOT00000053706 3 1 1 60 15 33613440 33613458 AGAGACGATAGCTCCTCTG 58 33613478 33613500 TACCTGACTCTCACGTATAAGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gar1 ENSRNOG00000061146 ENSRNOT00000078074 1 1 1 88 2 235257064 235257082 GAGGAGGATTTGGACGAGG 60 235255607 235257015 CTCTCCTAATAAGACGACTCGT 59 NA Rattus norvegicus 81 Mapk15 ENSRNOG00000009336 ENSRNOT00000091960,ENSRNOT00000012461 1 2 2 80 7 117059485 117059503 GACTCTTGGCATTTGCTCC 59 117059547 117059642 GGCAATGGAATCTCTGCAC 59 NA Rattus norvegicus 81 Ccdc62 ENSRNOG00000038002 ENSRNOT00000057814 3 1 1 81 12 38086523 38089375 AGTTAGAAGGTGAGCTGCA 59 38086460 38086479 ATCTGATTGGACTCAAGCGT 60 NA Rattus norvegicus 81 Mt4 ENSRNOG00000019004 ENSRNOT00000025694 3 1 1 62 19 11340570 11341811 TGTATGTCTGGAGGGATCTG 58 11340527 11340545 TTTACAGCTGCAGGTTGTG 59 NA DesignRelaxed Rattus norvegicus 81 Dnajc7 ENSRNOG00000017781 ENSRNOT00000080521,ENSRNOT00000024321 2 2 2 80 10 88513968 88513986 GCAGCATGTCGTAGTTTCC 59 88510975 88513926 ATTGGCATTCTTGAACTCCTG 59 NA Rattus norvegicus 81 Tssc4 ENSRNOG00000032677 ENSRNOT00000046669 1 1 1 227 1 216254999 216255018 GTTATTGAAGCGTGTACGGA 58 216255456 216255475 ATAAGACCTGACATCCGTCC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mreg ENSRNOG00000015774 ENSRNOT00000085619,ENSRNOT00000021152 2 2 2 80 9 79494507 79523277 ACCAAAGACTCAGAGGAGTG 59 79494446 79494464 CCTGTTCCTCACTTCCCTG 60 NA Rattus norvegicus 81 Suclg1 ENSRNOG00000005587 ENSRNOT00000007624 3 1 1 80 4 101202711 101203955 GTGTATTGGCATTGGAGGT 58 101203999 101204017 GTAGCTGGATCCTTCAGGA 58 NA Rattus norvegicus 81 Parp10 ENSRNOG00000004361 ENSRNOT00000006376 1 1 1 80 7 117297508 117297526 GAGTTCCAAGATGTGGTGC 59 117292438 117297465 ACGTTCTACTCGAACAATGC 59 NA Rattus norvegicus 81 Kcnb2 ENSRNOG00000028991 ENSRNOT00000045460 1 1 1 109 5 2982181 2982594 GCATGTAAGATCCTGGCCA 60 2982090 2982108 GGTTGCCCAAATTCATCGT 59 NA Rattus norvegicus 81 Kcnb2 ENSRNOG00000028991 ENSRNOT00000045460 3 1 1 110 5 2982181 2982594 GCATGTAAGATCCTGGCCA 60 2982089 2982107 GGGTTGCCCAAATTCATCG 60 NA Rattus norvegicus 81 Mob3c ENSRNOG00000037620 ENSRNOT00000067566 3 1 1 82 5 134684340 134686443 CTACACGTGTTGGAGTTCC 58 134686488 134686507 GACAAAGACTCGGAAGAGTC 58 NA Rattus norvegicus 81 Car4 ENSRNOG00000002916 ENSRNOT00000003908 3 1 1 80 10 72279547 72279565 GAAACGAGGTAAACGAGGG 58 72279607 72279737 TCACTGTGGAGTTTGTAAAGG 58 NA Rattus norvegicus 81 Mir138-2 ENSRNOG00000035643 ENSRNOT00000053766 3 1 1 63 19 11149802 11149820 GCTGGTGTTGTGAATCAGG 59 11149757 11149775 CTGGTGTCGTGAAATAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem132c ENSRNOG00000000963 ENSRNOT00000048474 1 1 1 80 12 33016047 33016065 AAGGAGACATAGTCACCGC 59 32914642 33016005 TCTTTACCTTGGCTCTTAGGA 58 NA Rattus norvegicus 81 LOC100363287 ENSRNOG00000029293 ENSRNOT00000049858 1 1 1 60 11 28724727 28724747 CCTGAATTGTGGAGTCTATGG 58 28724767 28724787 TGGATAGCAATATCTGGACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cyr61 ENSRNOG00000014350 ENSRNOT00000019501 2 1 1 81 2 251531181 251531540 ATCTGCAGAGCTCAGTCAG 59 251531118 251531136 AGTTGGGTTGGAAGCTCTC 60 NA Rattus norvegicus 81 Il2rg ENSRNOG00000003954 ENSRNOT00000075911,ENSRNOT00000076166 2 2 3 60 X 71166374 71166395 CTGGTTACTGAATACCATGGGA 60 71165998 71166016 CAGTCAGCCCTTTAGACAC 58 NA DesignNoJunction Rattus norvegicus 81 Olr157 ENSRNOG00000017252 ENSRNOT00000023170 2 1 1 60 1 169616542 169616563 ATTCTACCATCCTCACTGACAC 60 169616581 169616602 CCTCTCATCATAGCTACTACCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rasl10b ENSRNOG00000010302 ENSRNOT00000013687 3 1 1 146 10 70629260 70629278 GAGTCCATCTCCAGAGTCC 59 70629387 70630117 CCACCTAGACACGTTTAAGC 59 NA InUTR Rattus norvegicus 81 Rnf115 ENSRNOG00000000098 ENSRNOT00000000110 1 1 1 80 2 198914958 198917612 CTCAGGAGCAAGTCAATACG 59 198917655 198917673 GTAACTGCCGGACTTTCTC 58 NA Rattus norvegicus 81 LOC100910416 ENSRNOG00000049183 ENSRNOT00000074056 2 1 1 60 2 46204383 46204404 TTGTGGTCTTTGTTCTAGTTGG 59 46204425 46204443 GAGACAAACGTGGTACTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Npw ENSRNOG00000012390 ENSRNOT00000016554 2 1 1 60 10 14021314 14021914 CTAGAGCCTTCGGTGAGAC 59 14021272 14021291 GCAAAGATGATTTGCTGCAG 59 NA DesignNoJunction Rattus norvegicus 81 Taf12 ENSRNOG00000048288 ENSRNOT00000081681,ENSRNOT00000074251 2 2 2 82 5 150472357 150472375 TGTGGATCCCAGGATTTGG 59 150472420 150473333 CGCCATTCTCTGTTTGTGAG 60 NA Rattus norvegicus 81 Akap9 ENSRNOG00000026319 ENSRNOT00000010118,ENSRNOT00000090751 3 2 2 80 4 27218566 27222493 AGAATACAAGAGCAGGGCA 59 27218504 27218523 TTCAGTCAGTAAGCTCCTCC 59 NA Rattus norvegicus 81 Coq7 ENSRNOG00000017012 ENSRNOT00000022988 1 1 1 80 1 188178474 188178492 TACAACAACCAGATCCGCA 59 188176864 188178432 TCGAAACTGCTTAATGACCTG 59 NA Rattus norvegicus 81 Slc35f3 ENSRNOG00000049456 ENSRNOT00000071655 1 1 1 80 19 59186928 59186948 TTCTTCCCATTGTACTACGCA 60 59186988 59254043 ACAGCATTCCCTGTATCTCTG 60 NA Rattus norvegicus 81 Egr1 ENSRNOG00000019422 ENSRNOT00000026303 3 1 1 208 18 27657925 27657943 AGGAGATGATGCTGCTGAG 59 27658115 27658805 AAAGGACTCTGTGGTCAGG 59 NA DesignNoJunction Rattus norvegicus 81 LOC102553962 ENSRNOG00000046480 ENSRNOT00000074435 2 1 1 84 1 198831328 198831346 AGGAAGAGACCGAACTGTG 59 198830758 198831280 TGTCTGCAATCTGAGTGGA 59 NA Rattus norvegicus 81 Sh2d4a ENSRNOG00000013541 ENSRNOT00000018543 2 1 1 80 16 23085275 23085709 GGTGGAATATCACAAGGAGGA 59 23085215 23085233 GGCTTGTCTTGTTGACCAC 59 NA Rattus norvegicus 81 Giot1 ENSRNOG00000051563 ENSRNOT00000080491 1 1 1 81 7 13108643 13108664 GAATCCTTCCCAGAAGAATCTC 58 13108377 13108604 GTTCCATTTGTAGCCTATAGCA 58 NA Rattus norvegicus 81 Polr1a ENSRNOG00000009545 ENSRNOT00000013587 2 1 1 80 4 99875510 99875529 CAAGAAAGCACTGAGGAGAG 58 99875570 99875999 TCAACTTTCTGCAATACCTCC 58 NA Rattus norvegicus 81 Nlgn3 ENSRNOG00000003812 ENSRNOT00000005077 2 1 1 80 X 71202736 71202755 TCGTCGCCACTTATATCCAG 60 71202798 71203450 TCCGCTTTACATCTTCCGT 59 NA Rattus norvegicus 81 Azin2 ENSRNOG00000051507 ENSRNOT00000085151,ENSRNOT00000080340 1 2 2 83 5 147131571 147131591 CTTGATGAAGGTGTTTATGGG 57 147123389 147131526 AGATGGTTTCTTCTGCAGG 57 NA Rattus norvegicus 81 Atp1a1 ENSRNOG00000030019 ENSRNOT00000040430 1 1 1 80 2 204011882 204011900 TCTCCATGATTGACCCTCC 59 204010904 204011840 CCATGATGACCTTAATCCCAG 58 NA Rattus norvegicus 81 Ccdc7 ENSRNOG00000050191 ENSRNOT00000073524,ENSRNOT00000075053,ENSRNOT00000091209 1 3 3 83 19 62150202 62150223 ACCATCAACTATGACGAAAGAC 59 62146876 62150161 GAAGAAACAACCATCTTCAGGT 59 NA Rattus norvegicus 81 LOC100359993 ENSRNOG00000048458 ENSRNOT00000089454 2 1 2 60 6 139636927 139636945 GCAAATGGACAGTCTGAGG 59 139636621 139636903 TGATGTGTCTGTTGCACAG 58 NA DesignNoJunction Rattus norvegicus 81 Vom2r52 ENSRNOG00000033494 ENSRNOT00000042249 2 1 1 80 4 156611119 156618816 CTCATCTATGGAAGCTTCATCC 59 156611060 156611078 CCTTGTTCATGACAGCCTC 59 NA Rattus norvegicus 81 AABR07065699.5 ENSRNOG00000058753 ENSRNOT00000075467 1 1 1 130 6 139523667 139523685 AATCCCGACTGAGCATCAG 60 139523779 139524168 AACTGCAGTCTGGACTTCC 60 NA Rattus norvegicus 81 Zfp629 ENSRNOG00000018877 ENSRNOT00000085954 1 1 3 62 1 199060238 199060257 CATACATCTGTGCTGACTGC 59 198895476 198895494 TGACTTGGTGCTGAGACAG 60 NA DesignNoJunction Rattus norvegicus 81 Pdcd2 ENSRNOG00000001490 ENSRNOT00000002040 2 1 1 80 1 57517546 57517568 GCAAGGAACATCAGACATTAGAC 60 57516988 57517511 GAACCATATGGTCTAAATGGTCTG 59 NA Rattus norvegicus 81 Zbtb3 ENSRNOG00000019461 ENSRNOT00000026321 1 1 1 85 1 224998304 224998613 GTTGGAGGACTCACTGGAG 59 224998662 224998680 CTGTGTTCTGGGAACTCCA 59 NA InUTR Rattus norvegicus 81 AABR07065651.4 ENSRNOG00000050972 ENSRNOT00000075376 2 1 1 119 6 138679322 138679340 CTCTCAAATCCCGACTGAG 57 138679127 138679239 GAAGTGATCTGTGTCTGGC 58 NA Rattus norvegicus 81 AABR07065651.4 ENSRNOG00000050972 ENSRNOT00000075376 3 1 1 119 6 138679316 138679334 AATCCCGACTGAGCATCAG 60 138679121 138679237 GATTCTGAAGTGATCTGTGTCTG 59 NA Rattus norvegicus 81 Rilpl1 ENSRNOG00000001055 ENSRNOT00000001401,ENSRNOT00000090831 3 2 2 81 12 37518089 37518110 ATGAGAGGAATGAGCTTAAGTC 58 37518150 37519658 TCCTCTTCTATTTCTTCGCTC 57 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000078507,ENSRNOT00000080590,ENSRNOT00000060327 3 3 7 93 20 4095964 4095982 GAAGATGAGTGGAGTCGGG 60 4096039 4096453 TCCAGACTGTCCTTTCTGG 59 NA Rattus norvegicus 81 RT1-Db1 ENSRNOG00000033215 ENSRNOT00000089182,ENSRNOT00000080590,ENSRNOT00000060327 2 3 7 81 20 4087728 4087746 TGTTGCTAACAGTGCTGAG 58 4091565 4091586 CACTCGGATTTATACTGTTCCA 58 NA DesignNoJunction Rattus norvegicus 81 Med12 ENSRNOG00000003848 ENSRNOT00000076226,ENSRNOT00000090192,ENSRNOT00000040334 3 3 3 80 X 71184463 71184657 CCTGATAGGGTAAATGACATCG 59 71184698 71184716 TCCTAACCACTCTGCACTC 59 NA Rattus norvegicus 81 Tgfbi ENSRNOG00000012216 ENSRNOT00000016390 3 1 1 80 17 8408312 8409058 TCCCAGATTCAGCCAAGAC 59 8408250 8408268 CAGCTTGTCTGAGGAGGTC 60 NA Rattus norvegicus 81 Fbln7 ENSRNOG00000017550 ENSRNOT00000023708 3 1 1 81 3 121423546 121433346 CCGCTGTAGAGATACCAGTG 60 121433390 121433408 TCTGTAGTGGTGGACACCT 60 NA Rattus norvegicus 81 Klrh1 ENSRNOG00000059182 ENSRNOT00000079813 3 1 1 80 4 163603047 163603065 GGATGAAAGTGAGGCATCC 58 163599240 163603006 TGAATAAAGTTCTGCTCCTCTC 58 NA Rattus norvegicus 81 RGD1560685 ENSRNOG00000013839 ENSRNOT00000018492 1 1 1 60 19 13287528 13287546 AAGCTCATTGAGGCAGAGG 60 13287568 13287588 TGTATGTGACTGTGATGTTGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir674 ENSRNOG00000040429 ENSRNOT00000062182 3 1 1 62 3 108864470 108864488 TTGCACTGAGATGGGAGTG 60 108864514 108864532 AGCCTTGTTCTGAGATGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Calcoco1 ENSRNOG00000048982 ENSRNOT00000089290,ENSRNOT00000070855 1 2 2 80 7 144316261 144316281 GGAGTTAGAGGATGACATCCA 59 144314478 144316220 ACCATGTCTCTAACCCTGTC 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000079390 2 1 18 72 1 43475842 43475860 GGCCCTCTACTCTATCGTG 59 43475890 43527500 CTAGCTTACAATCACATACATGACC 60 NA DesignNoJunction Rattus norvegicus 81 Thap11 ENSRNOG00000019109 ENSRNOT00000025815 2 1 1 60 19 37826316 37826334 TCGGGAGATGATGTGAAGC 60 37826358 37826376 CTTCAGCAGCTGCAAACTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem220 ENSRNOG00000003367 ENSRNOT00000064764,ENSRNOT00000004516 3 2 2 89 10 53575897 53575915 CCTGAATGAGGAAGAAGGC 58 53576930 53579194 ACTGAATTCTTGGATGAGCTG 58 NA Rattus norvegicus 81 Pp2d1 ENSRNOG00000004719 ENSRNOT00000006325 1 1 1 80 14 72958062 72958080 GTTAACAGCTCTCCCTTCC 58 72950484 72958018 TGCTTGTACATTTCCAGCA 58 NA Rattus norvegicus 81 Ndufs7 ENSRNOG00000024568 ENSRNOT00000039728 1 1 1 97 7 12318929 12319572 ACATCTATGTGCCAGGCTG 60 12318850 12318869 GATCTTCAGCTTCTGTTCGC 59 NA Rattus norvegicus 81 Ttc9c ENSRNOG00000019464 ENSRNOT00000026376 3 1 1 80 1 225006347 225010548 AACCTAAAGACGCCAATGTC 59 225006286 225006306 GCTGTTTCTCTTTCCTATGGT 58 NA Rattus norvegicus 81 Klhl3 ENSRNOG00000019533 ENSRNOT00000034877 3 1 1 80 17 6993052 6993071 TTAAGTCTGGACCAGGTGTG 59 6993112 7014403 CACGGCTTCAAATACCTTCTC 59 NA Rattus norvegicus 81 AABR07063855.1 ENSRNOG00000011040 ENSRNOT00000014668 3 1 1 126 6 52824060 52824078 GACTCCCTGGAAATGAGCT 59 52823950 52823970 TCTTCTCAGTAGGGCAAGC 59 NA Rattus norvegicus 81 Cdc42ep1 ENSRNOG00000008517 ENSRNOT00000011270 3 1 1 152 7 120068070 120068088 CTTTGATAGCACTCCGGCT 60 120069571 120069589 TCTCGGTCTTGAGAATGGT 58 NA DesignNoJunction Rattus norvegicus 81 RGD1561777 ENSRNOG00000050425 ENSRNOT00000072256 2 1 1 80 20 45043474 45043493 CTGAACCGATCTTCCAAAGC 59 45043412 45043431 GAAGACAGAAACCCACAGC 59 NA Rattus norvegicus 81 Ccnf ENSRNOG00000007483 ENSRNOT00000064392 2 1 1 80 10 13610193 13610212 TGAAGAATCTGCTCATCAGG 57 13609815 13610150 GGGTCAGACATATCCACCT 58 NA Rattus norvegicus 81 Olr446 ENSRNOG00000046122 ENSRNOT00000071646 1 1 1 60 3 73003942 73003960 TGTGGTGATCCCTATGCTG 59 73003983 73004002 ACCTTTCACTTCCTTGTTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kdm3b ENSRNOG00000050200 ENSRNOT00000070930 3 1 1 80 18 27622931 27624182 GCTCACGATGAAGAAGTTCTC 59 27624224 27624242 TTTGCCGTCATGAATCCTC 58 NA Rattus norvegicus 81 Copz1 ENSRNOG00000036835 ENSRNOT00000065270 2 1 1 82 7 144917806 144918407 GACGGATAGTGAAATCGCC 59 144918450 144918471 TGCCGATCACATAGAAATAGAG 58 NA Rattus norvegicus 81 Trove2 ENSRNOG00000003434 ENSRNOT00000004701 2 1 1 80 13 60556591 60557226 AGTCTAAAGAGGTATGGAAGGC 59 60556532 60556550 TGGCAGTCATCTTTCCCAG 60 NA Rattus norvegicus 81 Heatr6 ENSRNOG00000002542 ENSRNOT00000003492 1 1 1 80 10 71056607 71056626 GCCTCTTAATCAGAACCACC 58 71056667 71058182 TCCACAATCACCTGTAATCTG 58 NA Rattus norvegicus 81 Myo1d ENSRNOG00000003276 ENSRNOT00000004609 1 1 1 80 10 67974043 67974063 AGTTGCTAATGAGCTGAAACG 59 67965587 67974005 CTAAATCGATTCACCTTTCGGAC 60 NA Rattus norvegicus 81 AABR07062183.2 ENSRNOG00000054265 ENSRNOT00000078121 1 1 1 80 4 164011496 164011514 TCAGATGTCAACAAGCCTG 58 164007788 164011452 GCTGAAGGAACTTCAGCTC 59 NA Rattus norvegicus 81 Ifitm10 ENSRNOG00000020164 ENSRNOT00000027344 2 1 2 80 1 215536573 215536594 CATCTTCAACTTCGTCTACCTC 59 215522199 215536533 TTCTTGTCCCGAACTTTGAG 58 NA Rattus norvegicus 81 Ifna2 ENSRNOG00000058365 ENSRNOT00000045433 2 1 1 60 5 107416450 107416468 TATCCCTGTCCTGCATGAG 59 107416408 107416428 TGACTCCTTTGATGTGAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ifna2 ENSRNOG00000058365 ENSRNOT00000045433 3 1 1 60 5 107416412 107416430 GCCTCTTCACATCAAAGGA 58 107416370 107416388 CAGAATGAGTCTAGCAGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mylip ENSRNOG00000017579 ENSRNOT00000024021 2 1 1 80 17 19690261 19690279 AACACTGCCCAATACAGCT 60 19688945 19690217 ATGCTTCCCAACAATGCTG 59 NA Rattus norvegicus 81 Hdac6 ENSRNOG00000047281 ENSRNOT00000064924 3 1 1 80 X 15402019 15402038 TATTGCATGTTCAACCACCT 58 15402081 15402210 GTCCACGATGAGAATCCTC 57 NA Rattus norvegicus 81 Foxj2 ENSRNOG00000009000 ENSRNOT00000065419,ENSRNOT00000087883 1 2 2 80 4 155665670 155665689 CATTCGACACAACCTTTCCC 60 155665732 155667187 CAATAGGAGCCCTTCCCAG 60 NA Rattus norvegicus 81 Arl4a ENSRNOG00000004282 ENSRNOT00000005800 1 1 1 60 6 59949267 59949285 CTTCTGGGATGTAGGTGGT 58 59949225 59949245 GCATCGGGTATATGACTTCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cacng6 ENSRNOG00000057852 ENSRNOT00000081837 2 1 1 85 1 64313788 64315419 CAAGAAAGAGGTAAACCTGGC 59 64313723 64313741 CCATGATGACACAGAGGCA 60 NA Rattus norvegicus 81 Nsun4 ENSRNOG00000012020 ENSRNOT00000016714 3 1 1 80 5 134370192 134372530 CTGTTGCCGTAACCTAGCT 60 134370130 134370149 GGCACATAACTGTGAAGGAC 59 NA Rattus norvegicus 81 Drc7 ENSRNOG00000025860 ENSRNOT00000031064 3 1 1 80 19 10366242 10366821 GCATCAGCTACGAGGTAGAG 60 10366181 10366203 CATTCTTCAGGTGAATCATGGTC 60 NA Rattus norvegicus 81 Smco1 ENSRNOG00000024960 ENSRNOT00000029572 3 1 1 61 11 71755647 71756062 GGTTCACCTCAATGGAACTG 59 71755605 71755623 CAAGCAAATGAGGACCTCG 59 NA DesignNoJunction Rattus norvegicus 81 Susd3 ENSRNOG00000016525 ENSRNOT00000032997 1 1 1 60 17 15823140 15823158 GTACAGAAGAGTGAGCAGC 58 15824508 15824526 CTCTCAGCTGGTACCACAG 60 NA DesignNoJunction Rattus norvegicus 81 Cyc1 ENSRNOG00000012457 ENSRNOT00000017067 2 1 1 89 7 117411507 117411525 AAGTAGCCAAGGATGTTGC 58 117411577 117411678 TCAACAACATCTTGAGTCCC 58 NA Rattus norvegicus 81 Rn60_1_0913.3 ENSRNOG00000051350 ENSRNOT00000076449 1 1 1 60 1 90123307 90123325 GCAACTTTATGAAGCCCAC 57 90123265 90123283 ACCACCCTGTTACTGTACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbm47 ENSRNOG00000002408 ENSRNOT00000003327 2 1 1 84 14 43830756 43831585 AAACAGGCAGCATAAGAGG 58 43831633 43831651 GAATACCCTCCCAGGTAGG 58 NA DesignNoJunction Rattus norvegicus 81 Tmem8a ENSRNOG00000020374 ENSRNOT00000079826,ENSRNOT00000027609 3 2 2 80 10 15490655 15491082 TGAGGGCTAACAAGTCAGAG 59 15491124 15491143 TGAAGCTGAGGAAAGGTGAG 60 NA Rattus norvegicus 81 Rgs6 ENSRNOG00000008082 ENSRNOT00000086136,ENSRNOT00000058181 3 2 2 80 6 106500907 106500926 CTACGTCTTCCCAATCTCAG 58 106500969 106502152 CAGAAGTAAGGAGCCTGGA 58 NA Rattus norvegicus 81 Dopey2 ENSRNOG00000051204 ENSRNOT00000076259,ENSRNOT00000083594 2 2 2 80 11 33964984 33965665 TCTTCTAGTTGAGGCTCTGG 59 33965708 33965726 AGATATTCATGGTGGCGCT 59 NA Rattus norvegicus 81 Skint4 ENSRNOG00000042047 ENSRNOT00000041421 2 1 1 80 5 132008917 132014551 CACTGAGTTCAGAACAATTCAC 58 132014590 132014610 AACTCAGGTCAACATTTCCAC 59 NA Rattus norvegicus 81 Bmp6 ENSRNOG00000013717 ENSRNOT00000018359 1 1 1 80 17 26955286 26955391 TGTACAGACCTTGGTCCAC 59 26955224 26955243 GAGATGGCATTCAGTTTGGT 59 NA Rattus norvegicus 81 Dgcr6 ENSRNOG00000001880 ENSRNOT00000002574 3 1 1 89 11 87080937 87080955 CTTCTGGAGATCCAGCACC 60 87078094 87080885 CAGAGTCTGTCTGAGCACTC 60 NA Rattus norvegicus 81 LOC679576 ENSRNOG00000014865 ENSRNOT00000019925 2 1 1 60 10 58784677 58784695 CCTTAGGAGCAAGTCCTCC 59 58784719 58784737 AGTCGATGTCTCCTTGTGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam71b ENSRNOG00000021425 ENSRNOT00000031580 3 1 1 80 10 31509164 31509183 ACAGTTGCATCAGTAACCCA 60 31509224 31510352 CATGGATTTCTGAGACGAGTG 59 NA Rattus norvegicus 81 AABR07027088.1 ENSRNOG00000046068 ENSRNOT00000075373 1 1 1 80 17 14091560 14091580 TGTGTCTATGGACTAGAGCTG 59 14087377 14091518 CCGAGATGTTGCAACTCTG 59 NA Rattus norvegicus 81 Stx18 ENSRNOG00000006139 ENSRNOT00000008410 1 1 1 80 14 77428719 77440807 GTACATTAATGCCTACAGCCAC 60 77428660 77428678 GCATCCTGGTCTATCTGGT 59 NA Rattus norvegicus 81 Ptprm ENSRNOG00000011700 ENSRNOT00000056366,ENSRNOT00000091316 1 2 2 80 9 114864934 114867283 TCCTACCCAGTTATGTCCAC 59 114864873 114864891 GCAGACACAAATTCCACCT 58 NA Rattus norvegicus 81 AABR07027098.1 ENSRNOG00000048372 ENSRNOT00000071112 3 1 1 80 17 14372590 14373810 CATCACAGAGGATTTGAAGATGAG 60 14372533 14372553 CTAAGAAACGGTAGCCTACCT 59 NA Rattus norvegicus 81 Arid3a ENSRNOG00000026435 ENSRNOT00000089009,ENSRNOT00000026708 1 2 2 94 7 12580008 12580026 CAACAAGAAGCTGTGGAGG 59 12579103 12579951 ACTTCATGTACTGTGTCCGA 59 NA Rattus norvegicus 81 Fahd2a ENSRNOG00000013974 ENSRNOT00000018922 3 1 1 80 3 120007224 120007242 CTTCAGCAAGTTCTCCAGC 59 120005486 120007182 TCCCAGTCAACTTCCTTACTC 59 NA Rattus norvegicus 81 Pdlim3 ENSRNOG00000012658 ENSRNOT00000017054,ENSRNOT00000085535,ENSRNOT00000017568 2 3 3 80 16 49543724 49544915 TGGTATTGTAGGTGCTGTG 57 49543662 49543680 TTGAGGTTACAGTCAGCAC 57 NA Rattus norvegicus 81 RT1-A2 ENSRNOG00000030712 ENSRNOT00000038660 3 1 1 84 20 5377256 5377368 CAGAGATGGGAGCCTTCTC 59 5377416 5377434 GAGTTCCAATGATGGCTCC 58 NA Rattus norvegicus 81 Cspg5 ENSRNOG00000020833 ENSRNOT00000028278 1 1 1 80 8 118339103 118339123 ATGATGACTGTGTTCTTTGCC 59 118339165 118341207 CCGGAATTTGTTGGTCCTC 59 NA Rattus norvegicus 81 RGD1565117 ENSRNOG00000033161 ENSRNOT00000045687 2 1 1 60 7 70445510 70445531 ATATCTGAAGCAAGTGTCTTCG 59 70445552 70445570 AGTGCAGCTTGACAAAGAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tmem167a ENSRNOG00000016686 ENSRNOT00000022377 3 1 1 104 2 18937510 18937528 GTACGTGTGCTTATGTGCG 60 18940039 18943502 TCTTGCGTTCACCAATTCG 59 NA Rattus norvegicus 81 Bbs10 ENSRNOG00000026913 ENSRNOT00000039096 2 1 1 101 7 54031549 54031925 TTAGCCAGGATGATAGTGGC 59 54031987 54032007 AAGTCCTCTGAGTAAATGGCA 59 NA Rattus norvegicus 81 Rpl6 ENSRNOG00000025936 ENSRNOT00000034951 2 1 1 82 12 40878172 40879277 GCTACTTGTGACTGGACCT 59 40878108 40878126 TTGTAGAGGTGGCGATGAC 60 NA Rattus norvegicus 81 Uqcrh ENSRNOG00000012550 ENSRNOT00000016751 3 1 1 93 5 134921965 134922688 AGAGGAAGAATTAGTGGACCC 59 134921892 134921910 ACACGACTCTAGTCGTTCC 59 NA Rattus norvegicus 81 Pigk ENSRNOG00000042359 ENSRNOT00000014725 1 1 1 80 2 257920023 257920044 TACCGACATGTTGCAAATACTC 59 257920081 257937509 CATAAGGACAATGTGACTGTCTG 60 NA Rattus norvegicus 81 Tmem70 ENSRNOG00000006608 ENSRNOT00000008680 2 1 1 86 5 2034280 2034301 GCCTCTTACATACACAAGTTGG 59 2021185 2034236 ATTTCACACCAAATACTGTCCG 59 NA Rattus norvegicus 81 Morc3 ENSRNOG00000026236 ENSRNOT00000076473,ENSRNOT00000076354,ENSRNOT00000064751 3 3 3 82 11 34071530 34073121 CAGTTAAAGGCAAACAACATGG 59 34073162 34073182 TCTTGCTTATTATGAGTCGGC 58 NA Rattus norvegicus 81 Rph3a ENSRNOG00000001368 ENSRNOT00000001844 3 1 1 80 12 41125235 41126748 GTAAGAAGAATGTCTGCACCA 58 41126790 41126808 GGCAGATCTTACAGAGCCA 59 NA Rattus norvegicus 81 Mcm4 ENSRNOG00000001833 ENSRNOT00000002510 2 1 1 80 11 89513629 89514111 TACCCACAGGAGGTTATACCA 60 89514148 89514171 TTCTAAGATGGAGTCAGGATAACG 60 NA Rattus norvegicus 81 Fam129a ENSRNOG00000002403 ENSRNOT00000003320 2 1 1 80 13 69072506 69077873 AGATGAAGTCCAGATCCTGAG 59 69077915 69077933 TTCAGTTTAGGCAGCAGGT 59 NA Rattus norvegicus 81 Tonsl ENSRNOG00000014703 ENSRNOT00000019754 1 1 1 80 7 117700346 117700900 GTCAGAGTCTCAAGTATGTATTGG 59 117700289 117700308 CACCTTGAAGATCATTGCCC 59 NA Rattus norvegicus 81 LOC100361349 ENSRNOG00000009168 ENSRNOT00000012135 1 1 1 60 2 192481132 192481150 CCAGAGTCTTGTCCTCCTC 59 192481090 192481108 TCTGTTGGTATGAGGGAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100361349 ENSRNOG00000009168 ENSRNOT00000012135 3 1 1 60 2 192481078 192481096 CAACAGAAATGCCCTCCTG 59 192481036 192481054 TCTTTGGTGGACACTTCTG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pdxp ENSRNOG00000009570 ENSRNOT00000040513,ENSRNOT00000073905 1 2 2 198 7 120140940 120140958 TTTCCTTCGCCAAGTTGAC 59 120144581 120144599 TGGAACATGTAAGGGCTGG 60 NA DesignNoJunction Rattus norvegicus 81 Magi2 ENSRNOG00000013962 ENSRNOT00000066643,ENSRNOT00000078799 1 2 2 80 4 11308646 11308666 CGAGTTTCTACAGGTGAAGAG 58 11227279 11308605 ACAATGACATCACCTGTCTC 58 NA Rattus norvegicus 81 Brap ENSRNOG00000046497 ENSRNOT00000072481 1 1 1 80 12 40383722 40383746 GTTCTATCCTGGAGACCAGC 60 40383661 40383679 ATGTTGATCTGCCCTTCCT 59 NA Rattus norvegicus 81 Brap ENSRNOG00000046497 ENSRNOT00000072481 3 1 1 80 12 40401068 40404246 GATGACACAACGTGTCCTG 59 40401006 40401024 AACACCACACTCGAAACAC 59 NA Rattus norvegicus 81 Eef1b2 ENSRNOG00000024186 ENSRNOT00000034740 3 1 1 80 9 69955809 69955828 GACATGACGAAACTTGAGGA 58 69955868 69955986 CACTGGAACCAATTTAGAGGAG 59 NA Rattus norvegicus 81 Jakmip1 ENSRNOG00000004998 ENSRNOT00000006771 2 1 1 81 14 78431595 78431613 GAGACGTCCTACAACACAG 58 78430191 78431550 CTTCTCTGGTTGTGGTCTC 58 NA Rattus norvegicus 81 Coch ENSRNOG00000005286 ENSRNOT00000007365 3 1 1 80 6 72371605 72371626 TTATTGTCACAGATGGACAGTC 58 72371666 72372814 AGAAGATGGTGATACCTGCA 59 NA Rattus norvegicus 81 Mctp2 ENSRNOG00000009932 ENSRNOT00000076444,ENSRNOT00000046645 1 2 2 80 1 133353524 133372418 AGAAAGAGGAAGAGAAGGAGTC 59 133353465 133353486 GGACAGTGGAAACAATATCCTG 59 NA Rattus norvegicus 81 Robo1 ENSRNOG00000029614 ENSRNOT00000087080,ENSRNOT00000042384 1 2 2 80 11 9990348 10020683 CGAGCGAATCACTATCCGA 60 10020725 10020745 CCAACACAAACATACTTGCCA 60 NA Rattus norvegicus 81 Mbd6 ENSRNOG00000006209 ENSRNOT00000008854 1 1 1 86 7 70576050 70576279 TCTTCTCCTGGAGAGGGAG 59 70575982 70576000 AGGAACTCGACAAGAAGGG 59 NA Rattus norvegicus 81 RGD1304624 ENSRNOG00000006986 ENSRNOT00000009180 3 1 1 83 6 75961818 75963322 CGCCTTTGGGATTTATTTCTC 58 75961755 75961773 TTCCTGACAGATCAGGGAG 58 NA Rattus norvegicus 81 Dnm1l ENSRNOG00000001813 ENSRNOT00000002482,ENSRNOT00000002477,ENSRNOT00000002478 1 3 3 80 11 88863820 88870032 TTCTGAGCTATGTGGTGGT 58 88870073 88870094 AGTGGATCAACAGATTCTAAGG 58 NA Rattus norvegicus 81 RT1-A1 ENSRNOG00000038999 ENSRNOT00000081240 3 1 5 168 20 5416724 5416836 CACTTTCCCAGAGATGGGA 59 5416966 5417160 TAGACTCCTCCTTTCCTACCT 59 NA Rattus norvegicus 81 Skil ENSRNOG00000009899 ENSRNOT00000013191 1 1 1 80 2 115868153 115868527 CAGTTGCAGATGGAAGTGG 59 115868091 115868111 TTTCTGTAGATTCTGCTGCTC 58 NA Rattus norvegicus 81 Rreb1 ENSRNOG00000015701 ENSRNOT00000079298,ENSRNOT00000060218 1 2 2 80 17 27571520 27571541 GGAGTTTGTTTGCAAGTATGGA 60 27560364 27571481 ACACAGCAAATGTCACATCTC 59 NA Rattus norvegicus 81 Styk1 ENSRNOG00000010347 ENSRNOT00000013833 3 1 1 80 4 165533428 165533446 CACCATCCCTCTCAAGTGG 60 165531180 165533385 CCAAAGGACCAAACATCTCC 59 NA Rattus norvegicus 81 Atp1b2 ENSRNOG00000011227 ENSRNOT00000015076 3 1 1 80 10 56208835 56208954 TCTTGGAGCCTTACAACGA 59 56208773 56208794 TATCGGGTTGCTCATAATATCG 58 NA Rattus norvegicus 81 Wdr5b ENSRNOG00000002253 ENSRNOT00000003068 3 1 1 60 11 67647174 67647193 ACTTTATGGTCACAGTCTGG 57 67647133 67647154 CAGACGACTAGAATCTGAAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rgs8 ENSRNOG00000002369 ENSRNOT00000083366,ENSRNOT00000003239,ENSRNOT00000088329 3 3 3 80 13 71112462 71112480 CGCACAAATCAGACTCCTG 59 71112522 71113431 CTGTGGAGAGTCTCTTGAGAG 59 NA Rattus norvegicus 81 AABR07009978.1 ENSRNOG00000038552 ENSRNOT00000058810 1 1 1 75 2 119139955 119139973 AAGGTCACCTGGAAAGAGC 60 119139898 119139916 CTTTCCGAAGACTGTCGGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Hdac1l ENSRNOG00000013695 ENSRNOT00000018423 1 1 1 60 9 84894422 84894440 TATCGTCCTCACAAAGCCA 59 84894380 84894398 TGATGTAGTCGTCGCTGTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Myadm ENSRNOG00000053450 ENSRNOT00000081980 2 1 1 134 1 64441131 64444181 GTTAAGGAAGCAGCCATGC 60 64441015 64441033 GGATACTAGCTGCAGGAGG 59 NA InUTR Rattus norvegicus 81 Lnp ENSRNOG00000001593 ENSRNOT00000068018,ENSRNOT00000083045 1 2 2 80 3 61449557 61464037 CAGGACAAGAGATTCGTCAG 58 61449496 61449515 GAGGAGGACCCTGATTAGAG 58 NA Rattus norvegicus 81 Tsc22d2 ENSRNOG00000038044 ENSRNOT00000088139,ENSRNOT00000015119 3 2 2 110 2 148609931 148609950 ACCTCTGTATTCAGCATAGC 57 148652074 148652721 TTTCACCAGATCCATTGCT 57 NA Rattus norvegicus 81 Olr881 ENSRNOG00000043125 ENSRNOT00000065917 2 1 1 60 7 3804483 3804501 TGTGATGTGTCTCCCTTCC 59 3804441 3804459 CCATCTGCTCAATGACCCA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rec114 ENSRNOG00000009332 ENSRNOT00000012381 3 1 1 81 8 63459316 63507514 ACAGACACTACTGGAAGGG 58 63459253 63459272 GAACAGAAGACAGTCCATGC 59 NA Rattus norvegicus 81 Rps15al2 ENSRNOG00000032877 ENSRNOT00000046642 2 1 1 60 11 84094695 84094713 GGAAGATCGTTGTGAACCT 58 84094734 84094755 AATCTAGGGCTTATAACTCCAC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pllp ENSRNOG00000016558 ENSRNOT00000022277 2 1 1 83 19 10748545 10748566 TGTCTTCTTCATCATCTACCTG 57 10748608 10750782 ACAAAGAAGACCAGTAACACC 58 NA Rattus norvegicus 81 Mir130b ENSRNOG00000035541 ENSRNOT00000053664 2 1 1 60 11 88129775 88129793 CTTGCTGGACACTCTTTCC 59 88129817 88129835 CATCATTGCACTGCTTCCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Thsd7a ENSRNOG00000030151 ENSRNOT00000052063 1 1 1 80 4 38696852 38696873 AGAGAATGTAAACTACCATGCC 58 38693376 38696811 ATTGCAAGGCAAAGAACAC 57 NA Rattus norvegicus 81 Trim37 ENSRNOG00000006248 ENSRNOT00000090921,ENSRNOT00000091163,ENSRNOT00000008298 3 3 3 80 10 74467290 74467309 GATGTTCCAGCAAGTTCACC 60 74467349 74471254 ACCAATTCACTGGTAAAGTCTG 59 NA Rattus norvegicus 81 LOC679247 ENSRNOG00000047631 ENSRNOT00000074645 1 1 1 83 7 70327780 70327798 AAGAAGGTGATCGAACTGG 57 70321459 70321478 ATCAGTGATGGTAACATCCC 57 NA DesignNoJunction Rattus norvegicus 81 LOC679247 ENSRNOG00000047631 ENSRNOT00000074645 3 1 1 84 7 70327780 70327799 CAAGAAGGTGATCGAACTGG 59 70321459 70321478 ATCAGTGATGGTAACATCCC 57 NA DesignNoJunction Rattus norvegicus 81 Cbx6 ENSRNOG00000046955 ENSRNOT00000068033 2 1 1 81 7 121053103 121057339 TTTCCTCCTAAAGCCAAGC 58 121053040 121053058 GATGTCTTTCTTGAGCCGG 59 NA Rattus norvegicus 81 Tor3a ENSRNOG00000004307 ENSRNOT00000005726 3 1 1 80 13 74270909 74276169 CTTCACAGGCTTAGAATCAGAC 59 74270850 74270869 TTCACTGCTTCTAGGACCAG 59 NA Rattus norvegicus 81 RT1-DOb ENSRNOG00000000454 ENSRNOT00000085724 3 1 2 84 20 4024436 4024454 AGCTTGGAGACGTCTACAG 59 4024502 4025447 TATTCAGACTGAGCCACCC 59 NA Rattus norvegicus 81 RT1-DOb ENSRNOG00000000454 ENSRNOT00000092127 3 1 2 61 20 4020430 4020448 CTCATGAGGCCAGATTCCT 59 4020472 4022407 CAGGTTGAAGATGAACCTGG 59 NA DesignRelaxed Rattus norvegicus 81 Ccdc71l ENSRNOG00000039207 ENSRNOT00000060006 1 1 1 80 6 51662319 51662337 GGAGAAGGTGGTGTACTCG 60 51662381 51662399 ATGAAGAGCTTGAAGGCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc71l ENSRNOG00000039207 ENSRNOT00000060006 3 1 1 81 6 51662318 51662336 AGGAGAAGGTGGTGTACTC 58 51662381 51662399 ATGAAGAGCTTGAAGGCGT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gbx2 ENSRNOG00000019495 ENSRNOT00000026419 2 1 1 153 9 97065391 97065409 AACTTCGACAAATCCGAGG 58 97064213 97064231 CCTTTGACTCGTCTTTCCC 58 NA DesignNoJunction Rattus norvegicus 81 Mab21l3 ENSRNOG00000016044 ENSRNOT00000021487 2 1 1 80 2 204245663 204253668 CTGAGTAAGATGGACCTGAGG 59 204245603 204245621 TGTAGTCAGAAGGTGGACG 59 NA Rattus norvegicus 81 Polr2f ENSRNOG00000011214 ENSRNOT00000015009 3 1 1 96 7 120389724 120389914 CATGAAGGAACTCAAGGCC 59 120389974 120389992 GATGATGAGCTCATCCACG 58 NA Rattus norvegicus 81 Tpr ENSRNOG00000002394 ENSRNOT00000063833 1 1 1 80 13 67646336 67646357 ACAACTCAGAAAGCAGAATCAC 59 67646395 67646524 AACTTCATCCTTCAACACTCTC 58 NA Rattus norvegicus 81 Snrpb ENSRNOG00000006961 ENSRNOT00000079923,ENSRNOT00000049857 2 2 2 93 3 122699737 122699755 AAGAGAAGCGAGTCCTTGG 59 122698203 122699681 GCAATGCCAGTATCTTTGGG 60 NA Rattus norvegicus 81 Gabra6 ENSRNOG00000003569 ENSRNOT00000004877 2 1 1 80 10 27858818 27859119 AAGTTTGGGAGCTATGCCT 59 27858756 27858777 TGGGACCTCTACTGAATAAAGC 60 NA Rattus norvegicus 81 Dtd2 ENSRNOG00000006727 ENSRNOT00000009020 3 1 1 91 6 72785241 72786709 GGAGATTCGGAGAGGATTGG 60 72781634 72785189 CGTTTAACAGCGTATTGACCA 59 NA Rattus norvegicus 81 Rn60_8_0402.1 ENSRNOG00000030252 ENSRNOT00000041862 1 1 1 74 8 40160154 40160465 AAGAACCTGGGAAACAGAG 57 40160098 40160116 AGGACTGGTATGACTGACG 59 NA DesignNoJunction Rattus norvegicus 81 Rbm3 ENSRNOG00000005387 ENSRNOT00000007367,ENSRNOT00000087033 3 2 2 80 X 15099610 15099630 TCAACTTCAACACTGATGAGC 59 15099672 15099967 CCTTGACAACAACCACCTC 59 NA Rattus norvegicus 81 Lrp1b ENSRNOG00000039050 ENSRNOT00000040023 3 1 1 80 3 25211805 25212045 CAACATTGGTGAAGTGCTC 57 25211743 25211761 TATGCTCAGATTTGCTGCT 57 NA Rattus norvegicus 81 Clec10a ENSRNOG00000018715 ENSRNOT00000025308,ENSRNOT00000080323 3 2 2 94 10 56768862 56769030 AGAAAGGCTTTACGCACTG 59 56769088 56769106 ATCTGAGGTGAAGTGTGCA 59 NA Rattus norvegicus 81 Gdi1 ENSRNOG00000056870 ENSRNOT00000089814 2 1 1 80 X 156405005 156405435 AGGCCTTGGCTTCTAATCTG 60 156404944 156404965 CATCAAAGTTTGCCACAAACAC 60 NA Rattus norvegicus 81 Olr1082 ENSRNOG00000050171 ENSRNOT00000048054 3 1 1 60 7 13530778 13530797 TCTCACCTTTCCATTGTCTC 57 13530737 13530755 CAGAACTGACGTACACTCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gzmm ENSRNOG00000030530 ENSRNOT00000011086 1 1 1 82 7 12894511 12894530 CTTCTACATCAAGCAAGCCA 58 12894353 12894466 GTCCATCCAGCTTAAGCAG 58 NA Rattus norvegicus 81 Chodl ENSRNOG00000001915 ENSRNOT00000031889,ENSRNOT00000090878 1 2 2 80 11 17549473 17553319 CAAGTATGAACCAGAGATTCATCC 59 17553357 17553376 TTCTCATGGGTGTCTTCAGG 60 NA Rattus norvegicus 81 LOC100363289 ENSRNOG00000010657 ENSRNOT00000014449,ENSRNOT00000086093 2 2 2 82 8 87211946 87211968 CTGAATACCAGAGACATAACCAC 59 87212010 87213469 TTGACAATAAGCCGTGCTG 59 NA Rattus norvegicus 81 Gemin4 ENSRNOG00000055236 ENSRNOT00000087689 1 1 1 60 10 64372141 64375782 GGACCCTTGAATATCTGTGAG 58 64372101 64372119 GTTCAGCCATCAAGAAGCC 59 NA DesignNoJunction Rattus norvegicus 81 Gemin4 ENSRNOG00000055236 ENSRNOT00000087689 2 1 1 61 10 64372141 64375783 AGGACCCTTGAATATCTGTGAG 59 64372101 64372119 GTTCAGCCATCAAGAAGCC 59 NA DesignNoJunction Rattus norvegicus 81 Olr1370 ENSRNOG00000046347 ENSRNOT00000073401 1 1 1 60 10 12521357 12521375 AACCCGTTCATCTACAGCC 60 12521315 12521335 TGAGCACTTTCCTTAAAGCAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam163a ENSRNOG00000024825 ENSRNOT00000036392 1 1 1 80 13 73746060 73746081 GGAATCCTAGCTACAGTGATCC 60 73745041 73746022 CTTCTTGCAGCAGTAATACTGG 60 NA Rattus norvegicus 81 C1qtnf5 ENSRNOG00000007613 ENSRNOT00000010127 3 1 1 138 8 48443819 48443837 AAGCTAGGAGTCTGTCAGC 59 48443939 48444202 GTAGTCTGTAGGCCCTTCC 59 NA InUTR Rattus norvegicus 81 Sdsl ENSRNOG00000001391 ENSRNOT00000001882 1 1 1 81 12 41644519 41644537 GTAAGGGCACAAGAACTGG 59 41644581 41645220 CATTGCCTTCCCATATCAGG 59 NA Rattus norvegicus 81 Heatr5b ENSRNOG00000025926 ENSRNOT00000035905 1 1 1 80 6 1352516 1352535 CTCCTAGTCAACTGTACCGA 58 1345860 1352473 CCACATATACCTCTGCCCA 59 NA Rattus norvegicus 81 Olr1383 ENSRNOG00000047402 ENSRNOT00000044667 3 1 1 60 10 34300334 34300354 CTTACTCCTATGCTCAATCCC 58 34300294 34300313 GTGCTCCTATCACATCACGA 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Irgq ENSRNOG00000046500 ENSRNOT00000081829 2 1 2 65 1 81399607 81399625 CAAGCCTTGGATGAGATGC 59 81399654 81399672 TTACTGATTGTGCTCTGGG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Trpc6 ENSRNOG00000006324 ENSRNOT00000008905,ENSRNOT00000042553 3 2 2 80 8 6905790 6906790 GGAAATTGAGGATGATGCGG 60 6906829 6906851 GTTCTTCCCTCTTCAAAGTAGGA 60 NA Rattus norvegicus 81 Ssbp1 ENSRNOG00000012100 ENSRNOT00000081178,ENSRNOT00000016217 3 2 2 82 4 68640022 68640511 CATACCAAATGGGTGACGTC 59 68640555 68640574 ATAAGCCACATCTCTGAGGC 60 NA Rattus norvegicus 81 Hipk1 ENSRNOG00000019333 ENSRNOT00000056079 3 1 1 80 2 206234721 206234739 ACAACAGCAGTCTAGTTCC 57 206234002 206234679 AGAACTTCCAGAGAAGATGTG 58 NA Rattus norvegicus 81 Oas1k ENSRNOG00000033220 ENSRNOT00000048782,ENSRNOT00000075234,ENSRNOT00000075317 1 3 6 81 12 41306150 41307123 TCTAAGGTTGTGAAGGGTGG 59 41306088 41306106 TAAGGAACACCACCAGGTC 59 NA Rattus norvegicus 81 Prickle3 ENSRNOG00000022417 ENSRNOT00000013758 1 1 1 80 X 15685478 15685587 GTGTGATGAGATCATCTTCTCC 59 15685419 15685437 TCGAAACAGCAGAAGTGAC 58 NA Rattus norvegicus 81 Ngf ENSRNOG00000016571 ENSRNOT00000022200,ENSRNOT00000078376 1 2 2 86 2 204932429 204932447 AAGCTCACCTCAGTGTCTG 59 204932496 204938633 CATTACGCTATGCACCTCAG 59 NA InUTR Rattus norvegicus 81 Bpgm ENSRNOG00000010133 ENSRNOT00000013569 2 1 2 80 4 61924606 61939863 TCTAGAAGGTATCTCAGACGAG 58 61939904 61939922 TTCTCATCCAACTCCAGCA 59 NA Rattus norvegicus 81 Rpap2 ENSRNOG00000023484 ENSRNOT00000002815 2 1 1 80 14 3174897 3174915 GGGAGTTCTACAGAGGACG 59 3170713 3174853 CACGCTGAAGCTCATTCTC 59 NA Rattus norvegicus 81 Rpap2 ENSRNOG00000023484 ENSRNOT00000002815 3 1 1 80 14 3175765 3183106 GAAGAAAGGACAAAGTGGCT 58 3175704 3175722 TAAGCATCGACATCTGCTG 58 NA Rattus norvegicus 81 Ltn1 ENSRNOG00000001602 ENSRNOT00000002180,ENSRNOT00000073948 3 2 2 81 11 27026480 27026502 CATGGTTTCAACTATTCCCTTCC 60 27024746 27026441 ACCATTTGTACAAGCAAGCTG 60 NA Rattus norvegicus 81 Slc22a15 ENSRNOG00000033051 ENSRNOT00000021713 3 1 1 80 2 204330490 204330508 CAATGGCAGTGAGATCCAC 59 204314761 204330449 TTGGCAATTAAGAACCACTCAG 59 NA Rattus norvegicus 81 Gfra4 ENSRNOG00000021241 ENSRNOT00000047947 2 1 1 138 3 123580204 123580222 ACTACCTGGACAACGTGAG 59 123579343 123579361 TCAAAGGCTTGTATGGCAC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07065827.1 ENSRNOG00000049315 ENSRNOT00000070923 2 1 1 80 6 143065503 143065604 AGTAACTGCAGGAGTCCAC 59 143065441 143065460 ATCTTCACTGAAGAGCCAGG 60 NA Rattus norvegicus 81 Msh3 ENSRNOG00000013673 ENSRNOT00000018449 2 1 1 80 2 21930063 21931543 AACCAGCAGAGAAGGTGAC 60 21930001 21930022 TCTTTGCTTTCTTGTTAGTGGG 59 NA Rattus norvegicus 81 Tor1aip2 ENSRNOG00000048267 ENSRNOT00000071482 2 1 2 80 13 73709035 73718246 CAGAAATCGAGGTGTGACG 59 73718288 73718308 TTTATCTGGACCCAGTCACAG 60 NA InUTR Rattus norvegicus 81 Rn60_20_0141.1 ENSRNOG00000001226 ENSRNOT00000037297 1 1 1 60 20 11928608 11928626 GGAGAGTGCCGAGAAAGAG 60 11928566 11928589 CTTATAGTCAATCAGTTCTTCGGG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 RGD1559629 ENSRNOG00000031317 ENSRNOT00000049500 2 1 1 60 6 69950763 69950783 CTTGATTATTGGCTATGCCAG 57 69950805 69950823 AATGGGATAGGAGGAGAGC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC683038 ENSRNOG00000033014 ENSRNOT00000046081 1 1 1 87 16 12537800 12537948 CAGACAAGAGTGAGAATGATTCTG 60 12537736 12537754 AGCTTAACCACAGCCTCTG 60 NA Rattus norvegicus 81 Tpgs1 ENSRNOG00000008296 ENSRNOT00000011010 2 1 1 69 7 12917636 12917654 CCAATTTCCCAGACAGTGG 59 12917585 12917603 AAATCCTCCTCGCTCTCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfp347 ENSRNOG00000031216 ENSRNOT00000044241 2 1 1 60 7 9974872 9974894 CCCTATGTATGTAATCAGTGTGG 59 9974834 9974855 CATGTACTTGAAGATTACAGCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Gpr135 ENSRNOG00000004499 ENSRNOT00000005933 3 1 1 60 6 94817263 94817287 CCTAACATTTCTATGTTCCTAGGTC 59 94817227 94817249 CCATGTTTCTAGTCCTATATCCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Prkar2a ENSRNOG00000020284 ENSRNOT00000027552,ENSRNOT00000088705 1 2 2 80 8 117535934 117536103 ATCACTAGAGATGTCAGAACGA 59 117536142 117536162 GTGATTATTCGCTCTCCATCC 59 NA Rattus norvegicus 81 Sh3tc1 ENSRNOG00000007993 ENSRNOT00000010784 3 1 1 83 14 80219426 80222604 TCTGGAGAGTCAGTTACAGG 58 80222650 80222668 TAGATGACACATCGCACCT 59 NA Rattus norvegicus 81 Tex14 ENSRNOG00000023698 ENSRNOT00000009077 2 1 1 80 10 74786856 74786877 AAGAAGATAGACTCTCCTCAGC 59 74786917 74791663 AGAACTATTTGGGCTTCCCT 59 NA Rattus norvegicus 81 Mybpc3 ENSRNOG00000012307 ENSRNOT00000016652 1 1 1 80 3 79946984 79947002 GCTAGTGATGGTGGGTCAG 60 79947045 79947149 CCATCCTTCAGCCATTTGAC 59 NA Rattus norvegicus 81 Fam60a ENSRNOG00000046048 ENSRNOT00000075027 3 1 1 80 16 18450946 18450965 AGACTCTGTCTGGAAACAGG 59 18451008 18453296 CATCAGAATCTGCTGTGGC 59 NA Rattus norvegicus 81 Sarm1 ENSRNOG00000010244 ENSRNOT00000013639 2 1 1 80 10 65757408 65757689 GAACTTTCGGGATCAGCAG 59 65757346 65757365 TTCATGCCTAGGTCTGTCTG 59 NA Rattus norvegicus 81 Tmem102 ENSRNOG00000015057 ENSRNOT00000020578 3 1 1 87 10 56412388 56412407 CAGGAGAGTTGGAGTGAAGG 60 56412219 56412340 GGTGAACTAGACCGAGTAGAG 59 NA Rattus norvegicus 81 Dera ENSRNOG00000007570 ENSRNOT00000009998 1 1 1 85 4 171821552 171825295 GAAACAAGGTAGGCTTTAAGC 58 171825341 171825360 CAGTTCCTCCTTTACCAGAG 57 NA Rattus norvegicus 81 AABR07013095.1 ENSRNOG00000049260 ENSRNOT00000071934 1 1 1 60 2 222935930 222935951 GATGTGATATCCAGATGAACCA 58 222935891 222935912 ACTCGTTCTCCAATAGATACAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029591.1 ENSRNOG00000057510 ENSRNOT00000086358 1 1 1 80 10 36580192 36580214 CTTTCCTTCGATGACTGCT 58 36580130 36580148 GATGATCTCCGTTCCAGAC 57 NA Rattus norvegicus 81 Olr1362 ENSRNOG00000047553 ENSRNOT00000060995 1 1 1 60 10 12369783 12369802 GAACCCTTTCATCTACAGCC 58 12369742 12369761 GAGCACTTTCCTTAAAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Mir336 ENSRNOG00000035459 ENSRNOT00000053582 3 1 1 60 10 35349768 35349790 CTCTCACCCTTCCATATCTAGTC 59 35349809 35349828 ACATCCCTTCATGGAATCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Golm1 ENSRNOG00000018400 ENSRNOT00000037597 1 1 1 80 17 5403237 5403256 GAAGAGCGGATAGAAGAGGT 59 5403296 5405389 ATAGAAATACTGCTGTCGTTGG 59 NA Rattus norvegicus 81 Tmem256 ENSRNOG00000037540 ENSRNOT00000056870 2 1 1 115 10 56446438 56446718 AAGGAGCTCTTTGACAAGG 57 56446893 56446912 GTAGTTCCAGAAGCTAGCAG 58 NA DesignNoJunction Rattus norvegicus 81 Sncg ENSRNOG00000058006 ENSRNOT00000087150 1 1 1 223 16 10725386 10725689 CAAAGTGTAACCTCGGTGG 59 10722397 10722415 TAGTCTCCTCCACTCTTGG 57 NA DesignNoJunction Rattus norvegicus 81 Synj2bp ENSRNOG00000006399 ENSRNOT00000009122 1 1 1 80 6 105231240 105240468 AGATCCTCTCGGTAAATGGC 59 105231179 105231200 CATATCCTGCATTACGGAAGAG 59 NA Rattus norvegicus 81 Pcdh10 ENSRNOG00000031974 ENSRNOT00000066542,ENSRNOT00000040187 3 2 2 80 2 136997590 136998113 CCGAGTTAACAGTTCTGCA 58 136998157 136998175 TCTCCCTGTTCACTGTCTC 58 NA Rattus norvegicus 81 Grik1 ENSRNOG00000001575 ENSRNOT00000085629,ENSRNOT00000051060,ENSRNOT00000042581,ENSRNOT00000050073,ENSRNOT00000081066 3 5 5 80 11 27864721 27864740 GACATTTGGATGTACGTGCT 59 27859104 27864678 CTCGTAGGGTGTGAACCTC 60 NA Rattus norvegicus 81 Cd247 ENSRNOG00000003298 ENSRNOT00000004403,ENSRNOT00000070958 3 2 2 98 13 84068321 84068340 CTGCAGAAAGACAAGATGGC 60 84069167 84070250 GCTGAGACCCTGGTAAAGG 60 NA Rattus norvegicus 81 Dcun1d1 ENSRNOG00000012734 ENSRNOT00000068334,ENSRNOT00000080100 2 2 2 80 2 122504605 122507153 CATGACAGAGTTAGGATGTGAC 59 122504546 122504566 CCTGGTTCTTTCAATTCTTGC 58 NA Rattus norvegicus 81 Mpv17 ENSRNOG00000049430 ENSRNOT00000034207 2 1 1 84 6 26595905 26595923 CAATGGAATGTCAGCCCAG 59 26596185 26596419 AGGCCAGAGATAGTAGTTGG 58 NA Rattus norvegicus 81 Ces1d ENSRNOG00000015519 ENSRNOT00000021812,ENSRNOT00000090865,ENSRNOT00000078874 3 3 3 80 19 15224945 15229650 TCTCGAAGTCACAGAGATGC 60 15229692 15229711 CCTCATGGCTGATACAAAGC 59 NA Rattus norvegicus 81 Gprc5a ENSRNOG00000008412 ENSRNOT00000011134 1 1 1 80 4 168846201 168846221 AAACCTCAACTCATGAAGCAG 59 168846263 168850439 CTCCTCAAGACCTTGGGTG 60 NA Rattus norvegicus 81 Aqp7 ENSRNOG00000009686 ENSRNOT00000012975 2 1 1 80 5 57360783 57369166 TGTCTTGATGGTGTTTGGC 59 57360721 57360741 AAGTTGACACCAAGATAGCTG 58 NA Rattus norvegicus 81 Dpp4 ENSRNOG00000030763 ENSRNOT00000085426,ENSRNOT00000077788,ENSRNOT00000040482 1 3 3 80 3 48295622 48305557 GACCATTACAGGAACTCAACAG 59 48295563 48295582 TGCTGTACCGTGAATAAGGA 59 NA Rattus norvegicus 81 Spon1 ENSRNOG00000058003 ENSRNOT00000092099,ENSRNOT00000087612 1 2 2 80 1 178658522 178658541 GCTTCACGTTAATTGCTCTC 58 178658582 178714763 CATCTATGATCTGGAAGGTGC 58 NA Rattus norvegicus 81 Nudt10 ENSRNOG00000046053 ENSRNOT00000048236 2 1 1 86 X 17172096 17172114 CTGGAGAAACTGAAGCTGG 58 17172164 17213427 CTCTGTTCATTAGGGCTCG 58 NA InUTR Rattus norvegicus 81 Cmya5 ENSRNOG00000023803 ENSRNOT00000073710 1 1 1 80 2 22657607 22657626 TCTTCTATGTGAGAGCCACC 59 22656396 22657565 ATCTAGTTCCTCTGGTGGAG 58 NA Rattus norvegicus 81 Tada1 ENSRNOG00000003816 ENSRNOT00000005090,ENSRNOT00000058689 2 2 2 80 13 84591533 84591552 TGGTTCAAGCAGAAGATCAG 58 84591594 84591789 GTGAGAATGGACATTGTCCT 58 NA Rattus norvegicus 81 Mlxip ENSRNOG00000001255 ENSRNOT00000001690 1 1 1 80 12 38573050 38573619 GTGGCTGCATTAAAGAACC 57 38572988 38573006 AGTGTTAAAGCCCATCCTG 57 NA Rattus norvegicus 81 Cyp4f17 ENSRNOG00000042496 ENSRNOT00000007428 3 1 3 80 7 14572685 14572703 CCAGCTATAGACCTCCTGC 59 14572746 14572876 ACAGATGTTCCCTTTAGGGA 58 NA Rattus norvegicus 81 Rn60_1_1734.1 ENSRNOG00000036817 ENSRNOT00000031043 2 1 1 60 1 167162227 167162247 ACACAGGTTAACTCTGAAGAC 58 167162187 167162206 TTTCCCTAATAGCTTCCACC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Cpz ENSRNOG00000008947 ENSRNOT00000012109 1 1 1 80 14 80413415 80415752 CATGAACTGATGGAGCCTG 58 80415794 80415814 GTAGATGAGTATTTCCCGTCC 58 NA Rattus norvegicus 81 AC126960.1 ENSRNOG00000039860 ENSRNOT00000031118 3 1 1 80 4 26253506 26254142 ACTTCTATCGTAACCTGCAC 58 26253445 26253463 TCTCCTGCTTCAGTTTGAC 57 NA Rattus norvegicus 81 Pgap2 ENSRNOG00000020371 ENSRNOT00000076240,ENSRNOT00000055235 1 2 3 98 1 167309270 167320523 ATGATATGGTGATGGCATGC 59 167320584 167320602 TACGTGAGAGCAGTCAGAG 59 NA Rattus norvegicus 81 Pgap2 ENSRNOG00000020371 ENSRNOT00000076240,ENSRNOT00000055235 3 2 3 101 1 167309267 167320520 AGGATGATATGGTGATGGCA 59 167320584 167320602 TACGTGAGAGCAGTCAGAG 59 NA Rattus norvegicus 81 Gas6 ENSRNOG00000018233 ENSRNOT00000076356 1 1 2 80 16 81231350 81233294 CAAGATATCAAGAGTGCATGAG 57 81231291 81231311 ACTTACTCTTAACACAGGTGG 57 NA Rattus norvegicus 81 Gas6 ENSRNOG00000018233 ENSRNOT00000076356 3 1 2 80 16 81231350 81233295 CCAAGATATCAAGAGTGCATGAG 59 81231292 81231312 CTTACTCTTAACACAGGTGGC 59 NA Rattus norvegicus 81 Ccng1 ENSRNOG00000003256 ENSRNOT00000079646,ENSRNOT00000065633 1 2 2 80 10 25907242 25907260 AAGCTACTACTGCCTTCCA 58 25906665 25907201 GATCGTTTCTCCTTTCAAATGG 58 NA Rattus norvegicus 81 Trpv6 ENSRNOG00000014714 ENSRNOT00000020616 1 1 1 80 4 70922409 70922773 CATTCCATGTCATCATTGTCAC 58 70922350 70922368 CCTCTCCATCTGAGTTGGT 58 NA Rattus norvegicus 81 St7l ENSRNOG00000014002 ENSRNOT00000019129,ENSRNOT00000084302 3 2 2 80 2 207375836 207375860 GAGATAATTTATAGACGGTCACAGC 60 207375896 207377930 TACATTGGTATCTCGCCTCAG 60 NA Rattus norvegicus 81 RGD1559848 ENSRNOG00000027798 ENSRNOT00000021014 3 1 1 60 6 103718487 103718507 TGGAGAATACGTCTACAAGGG 59 103718447 103718466 CTCATTCTGGACTGTTTCCT 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AC121204.1 ENSRNOG00000039439 ENSRNOT00000060436 1 1 1 83 5 58967822 58967862 AGAGTCCTCGAAACCATCG 59 58967909 58967927 CTTGGTGGTGATCTCGGAG 60 NA Rattus norvegicus 81 Nsg1 ENSRNOG00000005700 ENSRNOT00000008030 2 1 1 80 14 77383986 77394835 GAGAGGTTTAAGGTCTCCG 57 77394878 77394897 CACTTTGTAGACAACCAGGA 58 NA Rattus norvegicus 81 Nsg1 ENSRNOG00000005700 ENSRNOT00000008030 3 1 1 80 14 77383987 77394836 AGAGGTTTAAGGTCTCCGT 58 77394879 77394898 ACACTTTGTAGACAACCAGG 58 NA Rattus norvegicus 81 Olfml3 ENSRNOG00000019211 ENSRNOT00000026075 2 1 1 83 2 206221243 206221262 GATGAGAAGGTGACTGGAGG 60 206220686 206221198 GTAGCTACAGTCTGTCACCA 59 NA Rattus norvegicus 81 Mirlet7d ENSRNOG00000035594 ENSRNOT00000053717 1 1 1 60 17 16419988 16420008 TAGGAAGAGGTAGTAGGTTGC 58 16420030 16420048 AGTTAACTCCTTGTGGGCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ict1 ENSRNOG00000032780 ENSRNOT00000045875 1 1 1 81 10 103961976 103962235 CTTCAGAGACTCAGGATTGAG 58 103962277 103962296 TCCTGCTTGTCTTTATGGTC 58 NA Rattus norvegicus 81 Ankrd66 ENSRNOG00000046426 ENSRNOT00000075670 2 1 1 85 9 20004366 20004384 GAAAGGTCTCTGTGACCCA 59 20004433 20008464 CCATTTGCCCTCTGATTGC 60 NA Rattus norvegicus 81 Mrpl39 ENSRNOG00000047563 ENSRNOT00000074032 1 1 1 80 11 24187577 24187598 CAAAGTGGACTTCATAGAGGAG 58 24186604 24187538 TCAATGAAGTCACCGATTCTG 59 NA Rattus norvegicus 81 Theg ENSRNOG00000007960 ENSRNOT00000042792,ENSRNOT00000010549 1 2 2 86 7 13014387 13014662 GTGTCTGAAAGACAGGACG 58 13014712 13014730 CAATACAGGCAGAACTGCA 58 NA Rattus norvegicus 81 Wdr24 ENSRNOG00000019713 ENSRNOT00000026697 2 1 1 80 10 15194512 15194608 CATCACCAATGAGGATAACGA 58 15194650 15194668 TCCTCTCCTTCTACGTCAC 58 NA Rattus norvegicus 81 Gnb4 ENSRNOG00000011070 ENSRNOT00000087803 1 1 2 80 2 118989113 118989135 TTAAGAACGATATGCACGCC 59 118989052 118989070 CTACGTAGTTCCCAGACGG 59 NA Rattus norvegicus 81 Cyp2b2 ENSRNOG00000020775 ENSRNOT00000028196,ENSRNOT00000047540 3 2 2 80 1 83104083 83108846 TTCCTTCATGCAGTTTCGC 59 83108890 83108908 CCACATAGCATGACCACAG 58 NA Rattus norvegicus 81 Zfp606 ENSRNOG00000019127 ENSRNOT00000079249 1 1 3 95 1 66253717 66253735 GAGGAGAGCAGAAGACAGG 59 66253637 66253658 AAACCTTGGAACGTGACCT 60 NA Rattus norvegicus 81 Ubxn2b ENSRNOG00000009137 ENSRNOT00000012551 1 1 1 80 5 19285496 19290143 GACTTACAGTTGGCCTTGG 59 19290185 19290205 TGTAGCTGTAGATCTGTCAGG 59 NA Rattus norvegicus 81 Olr1416 ENSRNOG00000046967 ENSRNOT00000052223 2 1 1 60 10 43946947 43946966 TGTGAGGTTCTTACTGTGAC 57 43946906 43946925 TGAAGGTCTCATAGAGCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100365588 ENSRNOG00000053283 ENSRNOT00000080171 2 1 1 145 10 87516946 87516964 GAACTGCCGTGTTAGATGG 59 87516819 87516837 GTCCACAGTAGGATGGACG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vwa7 ENSRNOG00000000860 ENSRNOT00000001153 3 1 1 80 20 5011079 5011387 ACCTCCAGGGAAATGTAGC 59 5011431 5011449 CTGTCCTTGTTGATGCCTC 59 NA Rattus norvegicus 81 Trex2 ENSRNOG00000056983 ENSRNOT00000081973 3 1 1 60 X 157375052 157375070 ACATGGATCCTGAGATTGC 57 157375094 157375112 TTCTCCAAGGAAGATCGGT 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 F2rl3 ENSRNOG00000048186 ENSRNOT00000072664 1 1 1 67 16 18819728 18819747 GCATCTACGACGATGTAGAG 58 18819380 18819398 AAGTTCTACTGTGGGACGC 60 NA DesignNoJunction Rattus norvegicus 81 Krtap3-3l1 ENSRNOG00000049383 ENSRNOT00000045189 3 1 1 195 10 87475748 87475766 CCTCTGACAAGTCCTGTCG 60 87475571 87475590 ACATAGGTGGTGAGGTTGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc23 ENSRNOG00000013877 ENSRNOT00000078707,ENSRNOT00000073355 3 2 2 80 1 128628354 128637029 GTTTGCACAGTTGTATCAAGG 58 128637068 128637089 GTCTCAGTATATTCCAAAGCCT 58 NA Rattus norvegicus 81 RGD1305807 ENSRNOG00000010497 ENSRNOT00000064113 2 1 1 80 5 61448040 61451928 GCCTCTACCTCTTCATCGT 59 61451972 61451990 GCAGCTTGTCTTCAAACAC 58 NA Rattus norvegicus 81 Abcc2 ENSRNOG00000046727 ENSRNOT00000070861 1 1 1 80 1 263580313 263581861 TTCTCAGTGGAATCAAGATCCT 59 263581902 263581920 CTTTCTTCCGAATGCCCTG 59 NA Rattus norvegicus 81 Mcmdc2 ENSRNOG00000021702 ENSRNOT00000082023,ENSRNOT00000030053 3 2 2 80 5 8998039 8998057 TGGTGTCTGCTTCATAGGA 58 8990596 8997995 CTTCTGCTCTCCAAAGCTG 59 NA Rattus norvegicus 81 LOC100911713 ENSRNOG00000050660 ENSRNOT00000075612 3 1 1 100 9 20280302 20280320 CAAGATGCTGCAATTCGTG 58 20280382 20281058 CAAACTTAAGGACACCTTCCC 59 NA Rattus norvegicus 81 Mir148b ENSRNOG00000035525 ENSRNOT00000053648 1 1 1 60 7 144912056 144912079 GAGGTGAAGTTCTGTTATACACTC 59 144912097 144912116 AAGTTCTGTGATGCACTGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aff1 ENSRNOG00000002232 ENSRNOT00000066071,ENSRNOT00000086694 1 2 2 80 14 7234675 7235265 GAACACAAAGGATCTTCTGGAG 59 7234616 7234636 CTTTCCTGGCTTAGAGTTACC 58 NA Rattus norvegicus 81 Aff1 ENSRNOG00000002232 ENSRNOT00000066071,ENSRNOT00000086694 2 2 2 80 14 7230173 7230739 TTGCTGTCTTATGCTTGCG 59 7230111 7230131 AATACTTCATCACCGTGTCCT 59 NA Rattus norvegicus 81 LOC102547118 ENSRNOG00000039305 ENSRNOT00000060213 1 1 1 122 X 17252371 17252825 TCAGGTCCCAAGGTAAAGC 59 17252267 17252285 TGGAGAAGGTTTCAGGCTC 59 NA Rattus norvegicus 81 Tmem38b ENSRNOG00000028063 ENSRNOT00000034570 3 1 1 81 5 70665514 70668814 AAGATGTCCTTCCCTTGCA 59 70668858 70668877 TTGATATTGCCAGATGCCTG 58 NA Rattus norvegicus 81 Mzf1 ENSRNOG00000027550 ENSRNOT00000058563 3 1 1 80 1 65523527 65523947 TGATGGAGAATCCAGAGCTC 59 65523989 65524008 CCACCTTAGGTAGGAGAGTG 59 NA Rattus norvegicus 81 Dyx1c1 ENSRNOG00000056654 ENSRNOT00000085959 2 1 1 80 8 79648430 79648448 TGTATTTGAATCGGGCTGC 59 79648488 79650726 ATTCTAGTGCCTTAGAAGAGTCC 60 NA Rattus norvegicus 81 Dyx1c1 ENSRNOG00000056654 ENSRNOT00000085959 3 1 1 80 8 79640228 79640246 AAAGAGGCTACAGAAGCGA 59 79640286 79641083 CTCTTCAATCTTCATCATCTCGC 60 NA Rattus norvegicus 81 Pus7l ENSRNOG00000022570 ENSRNOT00000029097 2 1 1 83 7 135795544 135799545 AGTGTATACAGCTTTCACCC 57 135795480 135795498 ATAACGCCAAGTTGGATGG 58 NA Rattus norvegicus 81 Fau ENSRNOG00000046393 ENSRNOT00000048726 3 1 1 61 6 86921935 86921954 TGGGAGGTAAAGTTCATGGT 59 86921978 86921996 CTTGGGAGTCTGACCTCTC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Aloxe3 ENSRNOG00000007454 ENSRNOT00000010141 2 1 1 80 10 55713962 55713980 TCTGTGGTTCACTTTCCCT 59 55714024 55715243 GATGGTTCTTGCTGTTCCT 58 NA Rattus norvegicus 81 Akr1a1 ENSRNOG00000016727 ENSRNOT00000023072 3 1 1 82 5 135483766 135484204 AGATCTTGCTCAGATGGCA 59 135483702 135483720 AATGTTCTGAAGGATGCGG 58 NA Rattus norvegicus 81 Acsl5 ENSRNOG00000016265 ENSRNOT00000022126 3 1 1 80 1 276276013 276276769 CAGTGGAACTACAGGTGAC 58 276276813 276276831 AATTTGAGGAAAGCAGCCA 58 NA Rattus norvegicus 81 Cic ENSRNOG00000056118 ENSRNOT00000091357 2 1 1 80 1 82156103 82156123 CTAGTGAAGACATGACCAGTG 58 82156165 82156597 TGTCATCAGCAATGACGTC 58 NA Rattus norvegicus 81 Sod1 ENSRNOG00000002115 ENSRNOT00000002885 1 1 1 80 11 30367646 30367665 TGTCCATTGAAGATCGTGTG 58 30367708 30368674 CTTGTTTCTCGTGGACCAC 59 NA Rattus norvegicus 81 Sod1 ENSRNOG00000002115 ENSRNOT00000002885 2 1 1 81 11 30367645 30367665 GTGTCCATTGAAGATCGTGTG 60 30367708 30368674 CTTGTTTCTCGTGGACCAC 59 NA Rattus norvegicus 81 B4galt2 ENSRNOG00000019609 ENSRNOT00000026591 3 1 1 82 5 136711867 136714947 CTATGTCATCAACCAGCATGG 59 136711805 136711824 CCTCTTTCAGTGCCTCTAGG 60 NA Rattus norvegicus 81 Stat2 ENSRNOG00000031081 ENSRNOT00000049536,ENSRNOT00000088201 2 2 2 80 7 2705964 2705982 CATTGAATCAGCTGTTGCC 58 2706024 2706241 TTCTGAAGATTTCCATCTCCC 58 NA Rattus norvegicus 81 Ndufaf5 ENSRNOG00000004784 ENSRNOT00000006412 1 1 1 80 3 133247015 133247034 TTTCTCCTTTCACTGCTGTC 58 133247075 133251342 CATCAGTATCCACAGTCAGAG 58 NA Rattus norvegicus 81 Nnat ENSRNOG00000024923 ENSRNOT00000072502 3 1 2 81 3 154045022 154045040 GGAATGCTGCATTTACTGG 57 154045085 154045353 CCTGAACACCTCACTTCTC 58 NA Rattus norvegicus 81 AABR07049783.1 ENSRNOG00000049373 ENSRNOT00000072631 2 1 1 60 5 137709459 137709479 CTGGCTCTGTTCTACAATGTC 59 137709499 137709519 TACGAAGGCTGTAGATGATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Shcbp1l ENSRNOG00000002691 ENSRNOT00000003661 2 1 1 80 13 70876056 70877809 CATCACTATAAAGGGAGTTGGA 57 70877849 70877868 TTGGATACCACAAAGCTGTC 58 NA Rattus norvegicus 81 Gns ENSRNOG00000047350 ENSRNOT00000064349 2 1 1 80 7 63479645 63479663 CAGTACCAGAAGGCTTTCC 58 63479707 63481757 TAACCAGTGCTTGTTCGTC 58 NA Rattus norvegicus 81 Acaa1a ENSRNOG00000032908 ENSRNOT00000045049 1 1 1 103 8 128035689 128035745 TCCCTAGAAGAAAGGTGAACC 59 128035810 128035828 CTTCAGCTCATTGAGCAGC 59 NA Rattus norvegicus 81 Esam ENSRNOG00000033217 ENSRNOT00000050609,ENSRNOT00000083778 3 2 2 80 8 40004702 40007173 GACCAGCCTTAGATACCGTC 60 40007215 40007234 CCTTGCAGACATAGACTCCA 59 NA Rattus norvegicus 81 St6galnac6 ENSRNOG00000046984 ENSRNOT00000074401 3 1 1 80 3 11630855 11633728 GAGTAGCAACAAAGAGCAGC 60 11633770 11633789 TTGGAGCTGTAGAGGATGAG 59 NA Rattus norvegicus 81 Timp3 ENSRNOG00000004303 ENSRNOT00000005746 1 1 1 80 7 23548530 23553800 GCAAATGAAGATGTACCGAG 57 23548469 23548487 CCACAGAGACTTTCAGAGG 57 NA Rattus norvegicus 81 Tmem101 ENSRNOG00000054581 ENSRNOT00000081539 2 1 1 80 10 90095475 90095493 CTCCAGCTAGCCATTAGCA 59 90094415 90095434 ATACATACGGACCTTTAGCCAG 60 NA Rattus norvegicus 81 Tmem101 ENSRNOG00000054581 ENSRNOT00000081539 3 1 1 80 10 90095474 90095492 TCCAGCTAGCCATTAGCAC 60 90094414 90095433 AATACATACGGACCTTTAGCCA 59 NA Rattus norvegicus 81 Rgs20 ENSRNOG00000008100 ENSRNOT00000089273,ENSRNOT00000010682 3 2 2 93 5 14490478 14493064 CTCTCCGAAAGAGGTCAGC 60 14493119 14493139 TTGAGCGTCATCAAAGATGTG 59 NA Rattus norvegicus 81 RGD1565283 ENSRNOG00000002972 ENSRNOT00000003979 2 1 1 117 13 88644675 88644693 TATGTCCTCACTTGCGACC 60 88647607 88647627 GCATACGAAGTAGCTGTAAGG 59 NA DesignNoJunction Rattus norvegicus 81 Scimp ENSRNOG00000037409 ENSRNOT00000056608 3 1 1 136 10 57422785 57424729 CAGCTTAGACAAGGCAGGA 59 57419509 57419527 AAAGGTGAACTCCTGGGTG 60 NA Rattus norvegicus 81 AABR07060287.1 ENSRNOG00000049746 ENSRNOT00000043147 2 1 1 85 4 66091872 66091982 TACATCCCACAAAGCAAAGG 59 66092029 66092048 GCAGTGTTGTTCCAAATCTC 58 NA Rattus norvegicus 81 Lrrc4b ENSRNOG00000019418 ENSRNOT00000026259 1 1 1 80 1 100450583 100466560 GAACAGCATTCAGGTGATCC 59 100466603 100466621 ACCAGATTCTTGCTCAGCT 59 NA Rattus norvegicus 81 AC119011.1 ENSRNOG00000050497 ENSRNOT00000060181 1 1 2 85 7 117951209 117951227 GTCTGGATTCCGGTCAGAG 60 117951275 117953477 AAAGACCAGGAATCCTAGCC 59 NA Rattus norvegicus 81 Dopey1 ENSRNOG00000022847 ENSRNOT00000014783 3 1 1 80 8 94203474 94203849 AGAGACCTTCAGGATGTGAC 59 94203891 94203910 CCATGTTGTCTGTTCCAGAG 59 NA Rattus norvegicus 81 Kdelc2 ENSRNOG00000007177 ENSRNOT00000009497 1 1 1 80 8 57978806 57978825 AAGGGCAGTTAACTGCTAGG 60 57978866 57980272 CCGCATATTTCTGCAGTACTC 59 NA Rattus norvegicus 81 Rad54l2 ENSRNOG00000013570 ENSRNOT00000018475 1 1 1 80 8 115409179 115409412 GTTACATATGAATGGGCCAAGG 60 115409120 115409141 AAGAAGTACCATCTTGGGAGAG 59 NA Rattus norvegicus 81 Pbx1 ENSRNOG00000004693 ENSRNOT00000043004,ENSRNOT00000027996 3 2 2 81 13 86424530 86424549 TGTTATCAGCCAGACAGGAG 59 86391999 86424486 TCCATTAGCACTGATGCCC 60 NA Rattus norvegicus 81 Szt2 ENSRNOG00000028659 ENSRNOT00000039235 2 1 1 80 5 137194873 137194891 CTGCTTGTCTGTCACTCTG 58 137194706 137194829 CACGAAGAACTGAAGCCTC 59 NA Rattus norvegicus 81 Zfp472 ENSRNOG00000004572 ENSRNOT00000084634,ENSRNOT00000006044 1 2 2 80 7 15247728 15248595 AGGAAGCCTGAGAACTCTG 59 15248639 15248657 CTCTGTCGTTGCGTTTCTC 59 NA Rattus norvegicus 81 Csf1 ENSRNOG00000018659 ENSRNOT00000025222,ENSRNOT00000081835 2 2 3 95 2 210547143 210550356 CCTTCTTCGACATGGATGG 58 210547066 210547084 AATCATGTGGCTACAGTGC 58 NA Rattus norvegicus 81 Ptpn18 ENSRNOG00000013415 ENSRNOT00000067928,ENSRNOT00000084470 2 2 2 80 9 40986734 40986755 CAATTTCAGCCTCTTTGAAGTG 59 40986796 40986907 AACCTGTACTGCTCCTCTG 59 NA Rattus norvegicus 81 Wnt9b ENSRNOG00000003807 ENSRNOT00000005074,ENSRNOT00000078561 1 2 2 85 10 91792311 91792329 AATGCCAGTTCCAGTTCAG 58 91790872 91792262 TGTCTCCTTGAAGCCTCTC 59 NA Rattus norvegicus 81 Arhgap18 ENSRNOG00000011245 ENSRNOT00000015547 3 1 1 80 1 19270903 19270922 CATTGAAGAAGGCAGTCTGG 59 19269188 19270863 TCTTGGCAAAGATTCTTGACTC 59 NA Rattus norvegicus 81 Sorbs2 ENSRNOG00000013391 ENSRNOT00000029628 3 1 1 80 16 49679799 49681737 CAATGCAGGTCTGTACAACTC 59 49679739 49679759 TTGGAAAGAGGTCTGTAGGTC 59 NA Rattus norvegicus 81 Cfc1 ENSRNOG00000042646 ENSRNOT00000066284 3 1 1 87 9 41046176 41046280 AGAGACACAGAGACTGTGG 58 41046330 41046349 TAAAGGGCTGAGAAGATGCA 59 NA Rattus norvegicus 81 AABR07002905.1 ENSRNOG00000047959 ENSRNOT00000072570 2 1 1 80 1 88689439 88689458 TGCCACTATTGTGGTAAAGG 58 88688497 88689396 GAATGGCCGTATTCCAGTG 59 NA Rattus norvegicus 81 AABR07002247.1 ENSRNOG00000050476 ENSRNOT00000073121 1 1 1 80 1 69692263 69692300 AAATCCAAAGAACTCACAACGG 60 69692340 69692359 ACAAGACTGTAGCTTTGCCT 60 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000082605,ENSRNOT00000014230,ENSRNOT00000083233 3 5 10 83 10 87127013 87127031 AAGTCGACAGAGACAGTCG 59 87122197 87126968 TCATCATAATCGTCTGGGTCC 60 NA Rattus norvegicus 81 LOC100910214 ENSRNOG00000024462 ENSRNOT00000034036 3 1 1 80 12 41184885 41184904 AACACTTCCTGAAGCATCCT 59 41181806 41184845 TCTCCTTACACAGTTGATACCA 59 NA Rattus norvegicus 81 Prss33 ENSRNOG00000029279 ENSRNOT00000034380 2 1 1 131 10 13174489 13174730 CTTAGCCCAGGAGTACCAC 59 13174376 13174394 TAGCACTATGCGCTCACTC 60 NA Rattus norvegicus 81 Pag1 ENSRNOG00000061328 ENSRNOT00000090023 1 1 1 80 2 94273160 94273178 CTTCCAGAGAAGGGAGAGC 59 94273221 94274189 AAATCTGGAGAACTGCTTGC 59 NA Rattus norvegicus 81 Lhx6 ENSRNOG00000005996 ENSRNOT00000008817 3 1 1 80 3 15419480 15419689 AGCAATTGCAGGTTATGCAG 60 15419419 15419437 TCATGTCCGCTAGCTTCTG 60 NA Rattus norvegicus 81 Cntnap5b ENSRNOG00000032206 ENSRNOT00000047108 3 1 1 80 13 22122244 22146993 GAAATCATCACAGGCAGTGG 59 22147032 22147054 GAGAGTAACACGATTTCTTCTGG 59 NA Rattus norvegicus 81 Nell2 ENSRNOG00000006235 ENSRNOT00000008985,ENSRNOT00000087376 3 2 2 80 7 136704177 136704197 CTACTTTGAGGGAGAAAGGAG 58 136700860 136704135 TTCATGGTCTGATCCTTGC 58 NA Rattus norvegicus 81 Fgf11 ENSRNOG00000014882 ENSRNOT00000020152 1 1 1 81 10 56406877 56406895 CAGGGTTTCTACCTCCAGG 59 56406604 56406833 GATTGAAGTGGGTGAAGGAG 58 NA Rattus norvegicus 81 B3galt5 ENSRNOG00000030983 ENSRNOT00000050178 2 1 1 85 11 36677881 36679002 CTTACCTGGCAAAGATGGC 59 36679051 36679069 GCTGAAGTACAAGCAGAGC 59 NA InUTR Rattus norvegicus 81 B4galt3 ENSRNOG00000003551 ENSRNOT00000004735 2 1 1 80 13 89647513 89647657 AAGTTTGGATACAGCCTTCC 58 89647698 89647718 ATTCATCTTCAGGTACTGGTC 57 NA Rattus norvegicus 81 Dzank1 ENSRNOG00000007440 ENSRNOT00000029701 3 1 1 80 3 138635375 138635393 CCTCAGGTCCTATGCTCAG 59 138634174 138635332 GTAGCAGAGATGAGCTTTCC 58 NA Rattus norvegicus 81 LOC102550668 ENSRNOG00000033487 ENSRNOT00000048673 1 1 1 60 19 33130411 33130433 GGTGATATTGTAGACATCAAGGG 59 33130452 33130471 AACACTTGTGGGTCATTCCT 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lppr2 ENSRNOG00000012164 ENSRNOT00000016790 1 1 1 92 8 22951257 22951406 CACCCTCACGATCCTTCTG 60 22951462 22951480 GACACAATGGTGCTTTCCC 60 NA Rattus norvegicus 81 LOC500876 ENSRNOG00000004914 ENSRNOT00000006510 3 1 1 60 7 100382756 100382775 GAAATCAGACTCCCAAGTCC 58 100382715 100382734 ATGTATCCTGCTGAGACACC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Krt23 ENSRNOG00000011907 ENSRNOT00000016657 2 1 1 80 10 87397215 87397233 ATATCCATGAGCTGAGGCG 59 87394528 87397172 TTTCCAAAGCGGATTTCCTG 59 NA Rattus norvegicus 81 Uox ENSRNOG00000016339 ENSRNOT00000021970 1 1 1 80 2 252452369 252466747 GACTATGGAAAGAATGATGAAGTGG 60 252466780 252466803 CCTCTGAATATGGAGAACTTTGAC 59 NA Rattus norvegicus 81 Rnf41 ENSRNOG00000023456 ENSRNOT00000090689,ENSRNOT00000029778 2 2 2 94 7 2850630 2850648 CTGAAGGCGTATATGCGAG 58 2850705 2851373 TTCACCCACTCAAGGATCTC 59 NA Rattus norvegicus 81 Ccl3 ENSRNOG00000011205 ENSRNOT00000015139 2 1 1 146 10 70870369 70870935 CTTCTCAGCGCCATATGGA 60 70869992 70870010 CGGTTTCTCTTGGTCAGGA 59 NA Rattus norvegicus 81 Zfp414 ENSRNOG00000008378 ENSRNOT00000011094 3 1 1 83 7 18499383 18499845 TACTTCAAGTGTGAGAATTGCC 59 18499886 18499907 ACCATGGTCTATACAAACATGC 59 NA Rattus norvegicus 81 Zfand2b ENSRNOG00000018639 ENSRNOT00000025219 3 1 1 98 9 82372755 82372773 ATTGCTTTGCAGAATGGCT 59 82372919 82373212 CTCTTGAGAACTTGGGATCTG 58 NA Rattus norvegicus 81 Eps8l3 ENSRNOG00000048209 ENSRNOT00000074806 3 1 1 80 2 210679514 210679712 GAGATTCTGGAGATTCTGGAC 58 210679754 210679772 GCTGGGAATGTAACCAGTC 58 NA Rattus norvegicus 81 RGD1564039 ENSRNOG00000048021 ENSRNOT00000073262 2 1 1 87 3 143395910 143395930 GTAATTTCCAGAGGGAATCCT 57 143394847 143394915 GGACATAGTTTAGATATGGGCA 58 NA Rattus norvegicus 81 Andpro ENSRNOG00000031840 ENSRNOT00000049635 2 1 1 80 3 143895535 143896322 TCTATAACCTAAAGCGGACTCC 59 143895476 143895495 ATAGGAGCTTCCTGCATCTG 59 NA Rattus norvegicus 81 AABR07061614.2 ENSRNOG00000053654 ENSRNOT00000088301 2 1 1 60 4 136228550 136228568 CCTCAAGGATCTTACACGG 57 136228505 136228524 AAGTCTTTCAGCTTCTTGCG 59 NA DesignNoJunction Rattus norvegicus 81 Adgra3 ENSRNOG00000004279 ENSRNOT00000005894,ENSRNOT00000036646 1 2 2 80 14 64732679 64734905 CTCTTGACTTGTGGTCCTC 58 64734948 64734967 GTCTCCTTCAAACACAACCT 58 NA Rattus norvegicus 81 Git1 ENSRNOG00000061270 ENSRNOT00000078730 3 1 1 80 10 62662339 62662359 AGAATGGGCATTACATCATCC 58 62660530 62660719 TGGCCAATTGATCCAAACTC 59 NA Rattus norvegicus 81 Opcml ENSRNOG00000023809 ENSRNOT00000090643,ENSRNOT00000042890 3 2 2 80 8 29714511 29853598 TCATAGTGCAAGTTCCTCCC 60 29853641 29853659 ATAACAGGGTCACACTGCT 59 NA Rattus norvegicus 81 Ampd2 ENSRNOG00000019240 ENSRNOT00000088657,ENSRNOT00000026051 3 2 2 80 2 210866781 210866802 TGACCTACAGGAATTTGTAGCT 59 210866508 210866743 CGGTAGCAGAATGACTTTATGG 59 NA Rattus norvegicus 81 LOC498369 ENSRNOG00000020730 ENSRNOT00000028149,ENSRNOT00000077942 2 2 2 80 10 89470618 89471500 TCTAACACCCTCATGCTTCC 60 89471540 89471561 CAAATTCTCATCCACGAATGCT 60 NA Rattus norvegicus 81 AABR07037412.2 ENSRNOG00000047165 ENSRNOT00000073114 3 1 1 80 X 20224019 20225002 AGGTCCATCCTAGAGAAACAG 59 20225044 20225062 ACCCTTCTCCATGTAGTGC 59 NA Rattus norvegicus 81 Defb27 ENSRNOG00000036896 ENSRNOT00000055407 3 1 1 81 3 148073474 148073492 CTGTCCCAGGTCATTCCAG 60 148070100 148070118 TCTCTTTCCTGAGGCACTC 59 NA DesignNoJunction Rattus norvegicus 81 Klf8 ENSRNOG00000039057 ENSRNOT00000041039 1 1 1 80 X 18862102 18873589 GGAGGTATTCAAACAGGTCAC 59 18862042 18862064 GGAGAAGTCATATTCCTTCTGTC 59 NA Rattus norvegicus 81 Olr903 ENSRNOG00000047956 ENSRNOT00000050898 1 1 1 60 7 5401836 5401855 TTCTCCTTGCTATCATGTCC 57 5401876 5401896 ATGTAGTGCAGAGGTTTACAG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zfhx4 ENSRNOG00000008765 ENSRNOT00000011641 1 1 1 80 2 98448690 98456250 GACAGCCTCAGAAGAACTC 58 98448628 98448649 GTCTCTTTCTCATCATCCTCAG 58 NA Rattus norvegicus 81 RGD1310819 ENSRNOG00000018366 ENSRNOT00000068496 2 1 1 81 9 44195092 44195919 CATCAGAACTTGGCTCAGG 58 44195029 44195048 GATCGGAACTAGCATAGCTG 58 NA Rattus norvegicus 81 Rdm1 ENSRNOG00000020751 ENSRNOT00000028174 1 1 1 80 10 89545225 89546157 CCATCGTGGTTCTAGAAAGTG 59 89546198 89546217 CTTCTTCACTTCTGGCATCG 59 NA Rattus norvegicus 81 Suv420h1 ENSRNOG00000016790 ENSRNOT00000022486 1 1 1 80 1 219036704 219036806 CAGACCTAACTGTAAGTTTGTG 57 219036844 219036865 TCTTCTCCAGGTTCAATATCTC 57 NA Rattus norvegicus 81 Col6a4 ENSRNOG00000031782 ENSRNOT00000047563 1 1 1 80 8 114731869 114737096 GGAGACCATGGACCAAGAG 60 114731807 114731825 CTTAGGTCCTCTCACACCC 59 NA Rattus norvegicus 81 Hat1 ENSRNOG00000001524 ENSRNOT00000002085 1 1 1 80 3 58051983 58052001 ACCGTAGGCTACATGACAG 59 58052041 58052377 CAGTATCAGCATCTGACTTACAC 59 NA Rattus norvegicus 81 Hat1 ENSRNOG00000001524 ENSRNOT00000002085 3 1 1 80 3 58051018 58051038 AACCCTCCTCCATACATACTC 59 58051076 58051332 GTCATGTCAGCCTTGTATATCTG 59 NA Rattus norvegicus 81 Serpinb3 ENSRNOG00000031134 ENSRNOT00000040021 3 1 1 83 13 27188210 27188231 GTGGAAATACCATACAAAGGCA 59 27187523 27188168 TTCTTCAAGCTTCTTCAGACC 58 NA Rattus norvegicus 81 Zfp949 ENSRNOG00000043223 ENSRNOT00000032976 2 1 1 80 8 96363882 96376794 TGAATATGTGGAGTTGGTGTC 58 96376835 96376854 TGAGCATCACTGAGATTCTG 57 NA Rattus norvegicus 81 Tmem8b ENSRNOG00000015664 ENSRNOT00000021227 3 1 1 80 5 59186271 59191041 TTCTTCTCCACGTTCTACCA 58 59191082 59191102 GAACTGAAGCACATCGTAGTC 59 NA Rattus norvegicus 81 Fhl1 ENSRNOG00000000875 ENSRNOT00000084594,ENSRNOT00000043820,ENSRNOT00000001169,ENSRNOT00000083502,ENSRNOT00000087274 1 5 5 80 X 159167282 159167300 GTGCTTTGACAAGTTCTGC 58 159167342 159168348 TTATAGTGCACCTCCTTAGCA 59 NA Rattus norvegicus 81 Vangl2 ENSRNOG00000004889 ENSRNOT00000091710,ENSRNOT00000006849 2 2 2 60 13 90387585 90387603 GCTTCTATAATGTCGGCCA 57 90386724 90386743 TACTTCTCCAGGATCCACAC 59 NA DesignNoJunction Rattus norvegicus 81 Hectd4 ENSRNOG00000001352 ENSRNOT00000001826 3 1 1 80 12 40755439 40756494 TGAAATCAGAACCAGAGCCT 59 40755378 40755399 CACTGCTGTATGAATTCCTCAC 60 NA Rattus norvegicus 81 Gpd2 ENSRNOG00000033824 ENSRNOT00000044419,ENSRNOT00000088589,ENSRNOT00000090323 3 3 3 80 3 43344168 43344187 TTCAAGGAGGCAAAGATTGG 59 43344230 43344867 GTTGTGCAACCTCACTCTC 59 NA Rattus norvegicus 81 Slc13a5 ENSRNOG00000014870 ENSRNOT00000020043 2 1 1 80 10 58815530 58817587 AAAGGATGTGAGACTTCAGG 57 58815469 58815490 AATAATAGCAGGTCTCACTGAG 58 NA Rattus norvegicus 81 Tbc1d9 ENSRNOG00000003496 ENSRNOT00000065558,ENSRNOT00000080934 3 2 2 80 19 24413102 24416310 CCTACGAGAAATTTGGAACTATCC 59 24416348 24416367 GGGTTTGGATCACTTTCAGC 60 NA Rattus norvegicus 81 Rnf13 ENSRNOG00000029209 ENSRNOT00000068606 2 1 1 90 2 148037240 148037258 GAGATGAGTACGACGTGTG 58 148037310 148037794 CAATGATAAGCATGGGAACAG 57 NA Rattus norvegicus 81 Olr1767 ENSRNOG00000029322 ENSRNOT00000040369 2 1 1 60 X 137014419 137014437 CTGTGGTGATCCCTATGCT 59 137014377 137014397 GCTTTCACTTCCTGATTTCTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1767 ENSRNOG00000029322 ENSRNOT00000040369 3 1 1 60 X 137014625 137014646 CTCTGTTGTGGTAATTCTTGTC 57 137014586 137014604 TGGAATGCCCATGATAGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Fam65c ENSRNOG00000010791 ENSRNOT00000035463 1 1 1 80 3 164716615 164716637 GATTGTCAGTCTATGTCAGTCTG 59 164716200 164716576 CCTTTCTCACCAAACGACAG 59 NA Rattus norvegicus 81 Fam65c ENSRNOG00000010791 ENSRNOT00000035463 3 1 1 80 3 164716205 164716581 CAACACTGTCGTTTGGTGAG 60 164716144 164716164 GACAGAAGGCTTCTTGTTCTG 59 NA Rattus norvegicus 81 Mgat4d ENSRNOG00000003695 ENSRNOT00000004982 3 1 1 80 19 24528386 24528405 ACAAACCATCTCTGTTCCAG 58 24528445 24532608 AGTAGTAATGATCCTTGAGGTG 57 NA Rattus norvegicus 81 Tagln2 ENSRNOG00000008301 ENSRNOT00000011208 1 1 1 80 13 90807977 90808299 CAACTGGTTTCCTAAGAAATCC 57 90807918 90807936 CCAATCACATTCTTGCCCT 58 NA Rattus norvegicus 81 Zfp494 ENSRNOG00000042772 ENSRNOT00000065954 3 1 1 87 7 18180370 18180388 GAAGTGGAAATCCTGTGGC 59 18175939 18180320 AACATGGACCATAGCAGGAG 60 NA Rattus norvegicus 81 Eif2a ENSRNOG00000013393 ENSRNOT00000018022 2 1 1 83 2 148739237 148739259 CCCTAACCTACAACTTTATGACG 59 148739302 148739809 GAAGGACACCAATTCTGCA 58 NA Rattus norvegicus 81 Slc9a2 ENSRNOG00000015567 ENSRNOT00000021270 1 1 1 80 9 47418291 47418314 GTCAATGAACAGCTCTATATCCTG 59 47418351 47425451 GAACAAGTTGTACAGGACCAC 59 NA Rattus norvegicus 81 AABR07054045.1 ENSRNOG00000057476 ENSRNOT00000084576 3 1 1 88 3 137632430 137632449 AAGCCAGAAGGATTTCAAGG 58 137632358 137632382 TAATAGGTGTAGCCATCTTCAC 58 NA DesignNoJunction Rattus norvegicus 81 Olr1264 ENSRNOG00000047687 ENSRNOT00000073036 3 1 1 60 2 35285965 35285986 AATATACAGAGACCCATTTCCC 58 35286005 35286025 ACCGTGATAACATAGATGCCT 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kif7 ENSRNOG00000026857 ENSRNOT00000033491 3 1 1 80 1 141443938 141443958 CTACATCAGAGGAGGAAGAGG 59 141443477 141443897 AGTTGCTGATTCCATTCCTG 58 NA Rattus norvegicus 81 Dcaf8 ENSRNOG00000006785 ENSRNOT00000008944,ENSRNOT00000082469 2 2 2 80 13 90572649 90572669 CATCTTCCTCTGGGAGAAGTC 60 90572709 90576203 TCAAGACAGTTTACCACACCT 59 NA Rattus norvegicus 81 Spns3 ENSRNOG00000015873 ENSRNOT00000041886 3 1 1 80 10 59098925 59099963 TTCATCTCCTACCAGTATTCCTG 59 59098867 59098886 AATGGTGGAATAGCTTGCTG 59 NA Rattus norvegicus 81 Prkcsh ENSRNOG00000013360 ENSRNOT00000018009 2 1 1 80 8 23024474 23024492 TTTGATTTCGGTCCCTCTG 58 23024535 23024906 CCGGTAGACATACTCATTGG 58 NA Rattus norvegicus 81 Chst11 ENSRNOG00000008885 ENSRNOT00000012017 2 1 2 168 7 26646836 26750203 TACAATCCCATCCAGCTGG 59 26646686 26646704 AGATGAGTTCGTGGTCCTC 59 NA Rattus norvegicus 81 Chst11 ENSRNOG00000008885 ENSRNOT00000087536 3 1 2 170 7 26646838 26690121 TTAGTCTTGCGTTCGAGCT 60 26646686 26646704 AGATGAGTTCGTGGTCCTC 59 NA DesignNoJunction Rattus norvegicus 81 AABR07067274.1 ENSRNOG00000038721 ENSRNOT00000051890 2 1 1 60 9 37593327 37593345 TATCCACTGGTGATGTTGC 58 37593415 37593434 TCATACTTCTCCTTCAGCGT 59 NA DesignNoJunction Rattus norvegicus 81 LOC102551901 ENSRNOG00000045554 ENSRNOT00000072309 3 1 1 80 7 139050713 139050731 TTGGAACCTGATTCTGCTG 58 139049633 139050151 GTGGTGTTGTAGTAACTGGAC 59 NA Rattus norvegicus 81 Cdh19 ENSRNOG00000029841 ENSRNOT00000044628 2 1 1 80 13 32424113 32424133 TGTCAATGACAATGAACCCAG 59 32408505 32424073 ACAAATGTTCCTTCTGGAGAC 58 NA Rattus norvegicus 81 Dnajc25 ENSRNOG00000015340 ENSRNOT00000020702 2 1 1 97 5 76167985 76168003 CCCAGTCTCAGTTCGACAG 60 76168064 76171177 TTCCTGCTTGTAGACCTCG 59 NA Rattus norvegicus 81 Sln ENSRNOG00000009047 ENSRNOT00000011974 2 1 1 110 8 58431420 58435390 TTCTCTTCAGGACGTGAAGAC 60 58435462 58435480 AAACAGCTCCTGGGTAGAC 59 NA InUTR Rattus norvegicus 81 Myf6 ENSRNOG00000004878 ENSRNOT00000006523 2 1 1 81 7 49740249 49740555 TAAGGAAGGAGGAGCAAGC 59 49740186 49740205 TGAGGAAATACTGTCCACGA 59 NA Rattus norvegicus 81 Chp2 ENSRNOG00000019112 ENSRNOT00000025832 3 1 1 89 1 192171259 192171277 GATGAAGACGATGCCACAC 59 192171328 192171496 ATAGAGCTGAAATGCAAAGCG 60 NA Rattus norvegicus 81 Stxbp3 ENSRNOG00000020392 ENSRNOT00000027666 2 1 1 80 2 211628469 211628487 TGGATGACTTCACCACCAG 59 211627431 211628428 TCTCTATAACTGTCACACCCTC 59 NA Rattus norvegicus 81 Slc25a4 ENSRNOG00000010830 ENSRNOT00000014704 3 1 1 125 16 49269400 49269418 TTGTGAGCTGGATGATTGC 59 49269505 49270274 CCGTGTACATAATATCAGCCC 59 NA Rattus norvegicus 81 Foxo3 ENSRNOG00000000299 ENSRNOT00000000327,ENSRNOT00000076818 1 2 2 103 20 46429964 46429982 TCAAGGATAAGGGCGACAG 59 46505776 46505794 AGTCCCTTCGTTCTGAACC 59 NA DesignNoJunction Rattus norvegicus 81 Btbd16 ENSRNOG00000036675 ENSRNOT00000067742 1 1 1 80 1 201349005 201349026 CTACTTGACAGCCTTGATACAG 59 201349063 201352386 CTCTCAGTTGAATGGACTTTCAG 60 NA Rattus norvegicus 81 RGD1562914 ENSRNOG00000012022 ENSRNOT00000016127 3 1 1 124 8 55695194 55696308 TTTCGTCTTTAGAGACTCCTGG 60 55695091 55695109 CTGACTCCAGTTGGGAGAG 59 NA Rattus norvegicus 81 C2cd4d ENSRNOG00000020832 ENSRNOT00000028263 3 1 1 77 2 195604409 195604429 AACCCAATCTTCAACGAAGAC 59 195604468 195604486 CTTGGCCCTTAGACTACGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Oser1 ENSRNOG00000008297 ENSRNOT00000011610 2 1 1 80 3 159795099 159795120 CAGAACAACAGTAGATGACACC 59 159785387 159795060 GAAGACTTCCTTGTAGACCCA 59 NA Rattus norvegicus 81 Adgre5 ENSRNOG00000004489 ENSRNOT00000006152 1 1 1 80 19 24861353 24861373 TGAGTTTCTCTGTTGAAGTCC 58 24860547 24861311 CGATGAGTTTCTGGATGGT 57 NA Rattus norvegicus 81 Mtrr ENSRNOG00000017826 ENSRNOT00000061790,ENSRNOT00000024041 1 2 2 80 1 37770967 37771086 GAGACTATTTGTTCAGGGAGG 58 37771125 37771146 CTCTTGAGAATGAGACCTTCAG 58 NA Rattus norvegicus 81 Dbi ENSRNOG00000046889 ENSRNOT00000072295,ENSRNOT00000074685 2 2 2 95 13 36154866 36154884 CTGTGGGCGATGTAAACAC 59 36147914 36150852 CCTTGGAAGTTCCTTTCAGC 59 NA Rattus norvegicus 81 Bgn ENSRNOG00000055962 ENSRNOT00000085201 3 1 1 80 X 157323690 157323708 CTACCTTCAGTGCCATGTG 58 157323334 157323646 CAGTCTTCAGACCCAAGTC 58 NA Rattus norvegicus 81 Inhbb ENSRNOG00000060237 ENSRNOT00000086350 3 1 1 83 13 35439199 35441789 GCTTTGCAGAGACAGATGG 59 35439134 35439153 CAAATAGGTTCTGGTTGCCT 58 NA Rattus norvegicus 81 Fam213a ENSRNOG00000011140 ENSRNOT00000014819 1 1 1 93 16 17504439 17504458 CCAACACAGACATGTTTCTC 57 17504514 17506003 GTCCTTGGTTCTTTCTCCA 57 NA Rattus norvegicus 81 Svop ENSRNOG00000000693 ENSRNOT00000000874,ENSRNOT00000084511 2 2 2 80 12 48345338 48346499 CATTGGAAGAAATGTGCTAACC 58 48346540 48346558 TAAACGTAGGCTGCTTGGA 59 NA Rattus norvegicus 81 Dnttip1 ENSRNOG00000014933 ENSRNOT00000020280,ENSRNOT00000083553 1 2 2 80 3 161230716 161232941 CTCTTTAAGTATGCAGCAGATCC 59 161232981 161232999 CATCTTTCCTCCTGTTGCC 59 NA Rattus norvegicus 81 LOC100909434 ENSRNOG00000047473 ENSRNOT00000032351 3 1 1 60 2 182798597 182798615 AGCATTTCTGTGGATGACG 58 182798639 182798657 CATTATACACCTGCCTCCG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Samt4 ENSRNOG00000024271 ENSRNOT00000029966 3 1 1 69 X 24364227 24364247 TTCAAATGGATCTCTTCACCC 58 24362816 24362836 CTCAACTTGAAGATGCATTCC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ric8a ENSRNOG00000013256 ENSRNOT00000018470 2 1 1 84 1 213611628 213611646 GGAAGGCATGACAGAGGAG 60 213611694 213612079 GATGAGTCTGTGCCTGGAG 60 NA Rattus norvegicus 81 AABR07008377.1 ENSRNOG00000052207 ENSRNOT00000041483 3 1 1 60 2 55055494 55055514 AAGTGTGGAGTTATAAGCCCT 59 55055454 55055472 TCTGCCACTTCTCTAGGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ttc21b ENSRNOG00000005868 ENSRNOT00000007832 2 1 1 80 3 52328422 52329023 TTAAATGGAGAACAGCACGAG 59 52328362 52328382 ACGTAATTCTTCGCAAGTTCC 59 NA Rattus norvegicus 81 Tspyl5 ENSRNOG00000006278 ENSRNOT00000008227 1 1 1 60 7 72327128 72327147 CACGATCTACAGTCCCTGAG 59 72327087 72327105 ACCACCCAAAGAAGCTACC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Kansl3 ENSRNOG00000015417 ENSRNOT00000085260,ENSRNOT00000020955 1 2 2 80 9 42939779 42941862 GCAGCAGGAGAATACTATTGAG 59 42939720 42939739 TTGTCATAGAGTGGAGCAGG 59 NA Rattus norvegicus 81 Sidt2 ENSRNOG00000017871 ENSRNOT00000024240,ENSRNOT00000035310 1 2 2 80 8 50238345 50238513 TATGGCTCCTTTGAGAATGGT 59 50238285 50238304 GTAACTGTAGGAGAGGTCCC 59 NA Rattus norvegicus 81 Sidt2 ENSRNOG00000017871 ENSRNOT00000024240,ENSRNOT00000035310 2 2 2 80 8 50239768 50239786 TTTGCCTGGGCATATTCCT 59 50239382 50239724 TCTTCTTCCTTTGCCTCCA 59 NA Rattus norvegicus 81 Acot8 ENSRNOG00000015187 ENSRNOT00000020740 2 1 1 81 3 161263630 161267411 CCAGTACTTAAGGGATCCTAACC 60 161263571 161263589 CTCAATAGGCACCTCTCGG 60 NA Rattus norvegicus 81 Smim12 ENSRNOG00000014352 ENSRNOT00000019224 2 1 1 60 5 145314507 145314526 GGACAAGCTAGAATTTGCCC 59 145314549 145314567 TCAATTCTTCTCTGGGCGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ccdc130 ENSRNOG00000008319 ENSRNOT00000011150 2 1 1 84 19 25369944 25370973 GACTCCGATCTACAGGTTCC 59 25369879 25369897 ATAGTCACAGTTGGCAGGG 59 NA Rattus norvegicus 81 Wdr48 ENSRNOG00000016942 ENSRNOT00000024172,ENSRNOT00000082356 3 2 2 80 8 128585875 128585894 GCACTCAACAGACTCTTCAC 59 128585935 128587753 GTATGGATCTTGCTTGTGCTG 60 NA Rattus norvegicus 81 LOC102547078 ENSRNOG00000047740 ENSRNOT00000057007 3 1 1 85 3 81884041 81886453 CACCAGCTATGATGAAGATGAG 59 81883977 81883995 CCTCTTCCTCTGGAGAACG 59 NA Rattus norvegicus 81 Aplp2 ENSRNOG00000047179 ENSRNOT00000070818,ENSRNOT00000074457 3 2 2 80 8 32306776 32307432 GAGATTCAGGAGGAAATTGATGAG 59 32306719 32306738 GTTCTCTGAGATGGAGGAGG 59 NA Rattus norvegicus 81 AABR07067526.1 ENSRNOG00000060633 ENSRNOT00000080275 3 1 1 61 9 51129583 51129601 ACAATCCACAGAAACCACG 58 51129629 51129647 GAGTCTCTGGGTCTCTGGA 60 NA DesignNoJunction Rattus norvegicus 81 RGD1564447 ENSRNOG00000032401 ENSRNOT00000049001 3 1 1 60 7 94777986 94778004 GTGCGAGAAATTGCTCAGG 60 94778028 94778046 CACCAATAGCTGCACTCTG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr56 ENSRNOG00000051464 ENSRNOT00000087667 2 1 1 60 1 167944759 167944780 CTTCATTCAACTCTTCACTGTC 57 167944801 167944819 GCGATCATAAGCCATAGCC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Rbpj ENSRNOG00000046327 ENSRNOT00000071929 2 1 1 80 14 59670036 59670055 AACCCTGTGCATTTATTGGA 58 59666975 59669993 CTGTGCAGTAGTTCTTCCC 58 NA Rattus norvegicus 81 Chchd4 ENSRNOG00000033038 ENSRNOT00000043517 1 1 1 60 1 248403079 248403099 AATGATCCCTATGAGGAGCAC 60 248403118 248403139 GGCAATTCCAGTTAATGTCTCC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chchd4 ENSRNOG00000033038 ENSRNOT00000043517 2 1 1 60 1 248403080 248403099 ATGATCCCTATGAGGAGCAC 59 248403121 248403140 GGGCAATTCCAGTTAATGTC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Samt2 ENSRNOG00000046569 ENSRNOT00000065084 2 1 1 60 X 21944972 21944993 AGGGTCAGCATAATCAAATCCT 60 21944933 21944957 CTGAGCACTTGTAACATACTATCTG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Sez6l ENSRNOG00000025612 ENSRNOT00000032193 3 1 1 80 12 50237164 50238017 CATCTATGTCACGAGGTGC 58 50238061 50238079 ACAGTGATCTGGCTGTAGG 59 NA Rattus norvegicus 81 Dpy19l2 ENSRNOG00000045585 ENSRNOT00000071884 1 1 1 80 8 25796729 25796747 GCTCTGCTTCTCCAATGTC 59 25780297 25796686 AATAACGAGGCTATCTGGGT 58 NA Rattus norvegicus 81 Chrna6 ENSRNOG00000012283 ENSRNOT00000016452 1 1 1 80 16 68865362 68866505 CAAAGGAGGTAGAAGATGACTG 58 68866543 68866564 CACAGACGATTATAAACACCCA 59 NA Rattus norvegicus 81 Arhgef6 ENSRNOG00000000869 ENSRNOT00000001158 2 1 1 80 X 159801795 159839307 CTTCAAGTGGAAGTGTTTGAG 58 159801735 159801755 GACAGCTAGAAGGGTATTCAG 58 NA Rattus norvegicus 81 Ttc21a ENSRNOG00000034089 ENSRNOT00000043831 3 1 1 80 8 128628653 128628674 AAGAAATCCATCAAGTACCTGG 58 128628715 128629921 GAAGTACTTTGCCTTGCCC 59 NA Rattus norvegicus 81 Cstf2t ENSRNOG00000050289 ENSRNOT00000074100 2 1 1 60 1 249575731 249575750 CCTAACGTCATGTTGAACCA 58 249575771 249575791 GTCTTCTTGGTAAATGCTGAG 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Chek2 ENSRNOG00000037509 ENSRNOT00000085591,ENSRNOT00000056800 3 2 2 80 12 51852895 51853586 GAGGACTGTCTTATCAAGATCAC 59 51852837 51852857 ACCACATAGAGTCCTCATCAG 59 NA Rattus norvegicus 81 Limd2 ENSRNOG00000025448 ENSRNOT00000035973 1 1 1 80 10 94351821 94351924 AGCGGTCTAAGTCCTTTAGC 60 94351760 94351779 GCTCCATAGGGTACACAGTC 60 NA Rattus norvegicus 81 Rnasek ENSRNOG00000018881 ENSRNOT00000025767 1 1 1 105 10 56849247 56849923 TCATGTTGATAATGCTCGGG 58 56848689 56848707 TATATGTTCTGAGGGCCGT 58 NA Rattus norvegicus 81 Chst10 ENSRNOG00000012815 ENSRNOT00000087866,ENSRNOT00000017714 2 2 2 88 9 45536282 45538226 AAGTCATGAAGCCAACTGG 58 45536212 45536230 GTTTCTGATGAGCTCCAGC 59 NA Rattus norvegicus 81 LOC100365525 ENSRNOG00000031248 ENSRNOT00000058250 1 1 1 80 2 132537551 132537572 CAAATTGGATTCAGACGAAGAG 58 132536528 132537513 TGTAGGAAGTCCTTAAAGATCC 57 NA Rattus norvegicus 81 Cobll1 ENSRNOG00000027016 ENSRNOT00000001607 3 1 1 80 3 51195814 51195837 GTTATATGCCATGGATATCAGCAG 60 51187903 51194603 GATATTTGGCAGGACTCTTGG 59 NA Rattus norvegicus 81 Pik3ip1 ENSRNOG00000018859 ENSRNOT00000085228 1 1 2 86 14 83561832 83561850 TACATCAGCAGCGAGACTG 60 83561900 83562975 TGTCTCTTTGTCACCAGGG 59 NA Rattus norvegicus 81 Ccdc60 ENSRNOG00000032684 ENSRNOT00000046882 1 1 1 80 12 46146659 46146679 AGAGTTAAACAAGTTCCAGCC 59 46146720 46156378 TCGTATTCGTAGGTGGTCAG 59 NA Rattus norvegicus 81 Ccdc60 ENSRNOG00000032684 ENSRNOT00000046882 2 1 1 80 12 46146660 46146681 GAGTTAAACAAGTTCCAGCCAG 60 46146720 46156379 TTCGTATTCGTAGGTGGTCAG 60 NA Rattus norvegicus 81 Spink14 ENSRNOG00000045824 ENSRNOT00000073750 1 1 1 66 2 36011093 36011111 CTTCATTCGATGCTCCTGG 58 36011785 36012943 TCTTAATCAGTCCATGTGTAGG 57 NA DesignNoJunction Rattus norvegicus 81 LOC100364877 ENSRNOG00000049646 ENSRNOT00000075721 3 1 1 62 X 134389439 134389457 GACCGAAAGTGAACGTCTC 59 134389480 134389501 CCCTTGTTTGATTTCTGAAGTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000087190,ENSRNOT00000089624 2 2 5 100 8 99717199 99717219 TCAGAATGACAAGAAGGAGGA 59 99717278 99723371 CCTCATCAAGAGACTTGATCTC 58 NA Rattus norvegicus 81 Tchp ENSRNOG00000001191 ENSRNOT00000001577 1 1 1 82 12 47641222 47642452 TGATGAGCGAGGTTCTGAC 60 47641158 47641176 TAGGGTCTCCTCTTGTGCT 60 NA Rattus norvegicus 81 Prep ENSRNOG00000051061 ENSRNOT00000076640,ENSRNOT00000091456 2 2 2 80 20 50177663 50194468 TGAACAGACAAAGGCTTTCG 59 50194507 50194529 TATAGACCTCTGATTGGACACTG 59 NA Rattus norvegicus 81 Ptx3 ENSRNOG00000012280 ENSRNOT00000016541 3 1 1 78 2 158098107 158098125 CAATGGACTTCATCCCACC 58 158098593 158098611 GATGAACAGCTTGTCCCAC 59 NA DesignNoJunction Rattus norvegicus 81 Stag1 ENSRNOG00000015389 ENSRNOT00000079618,ENSRNOT00000066917 2 2 2 80 8 109192412 109192431 TGTATAGCGATGCCTTCCTC 60 109192474 109202625 GTCTGACTTCACCTTGCCT 60 NA Rattus norvegicus 81 Hps4 ENSRNOG00000000661 ENSRNOT00000079256,ENSRNOT00000000824 3 2 2 80 12 50298928 50298947 TCATCTTACAGACCTGCCAG 59 50297486 50298887 GCTGGGAATTCACAATCAGTC 60 NA Rattus norvegicus 81 RT1-DMb ENSRNOG00000051002 ENSRNOT00000087520,ENSRNOT00000078309 3 2 3 80 20 5227632 5227650 CTACACTCCTCTCCCTGGA 59 5227306 5227325 GTCTGGATCTCCTTCTCAGC 60 NA DesignNoJunction Rattus norvegicus 81 Olr1107 ENSRNOG00000010787 ENSRNOT00000014316 3 1 1 60 7 140032651 140032671 ATTCACCACTACACTTGTGAG 58 140032692 140032711 TGGAGATATCCGAACAGGAC 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Agpat9 ENSRNOG00000002159 ENSRNOT00000002936 2 1 1 80 14 10357318 10358547 CATCCATTACCATAACAAGCAG 58 10357259 10357277 AAGACATCGATGGGAGAGG 59 NA Rattus norvegicus 81 Bcl2 ENSRNOG00000002791 ENSRNOT00000003768 2 1 1 73 13 26768599 26768617 GACTGAGTACCTGAACCGG 60 26605774 26768563 ATAGTTCCACAAAGGCATCC 58 NA DesignNoJunction Rattus norvegicus 81 Popdc3 ENSRNOG00000047102 ENSRNOT00000073259 1 1 1 80 20 50419403 50419582 CCAGTATCTTGTTTGTGTTCG 58 50419622 50419642 TATACAGCACGTGGAATTCTC 58 NA Rattus norvegicus 81 RGD1564340 ENSRNOG00000013243 ENSRNOT00000066617 1 1 1 81 3 176721957 176723274 GAAGAGGAGTGCTCCTAGAC 59 176723318 176723336 AGGAATGTGGACTGTCCAG 59 NA InUTR Rattus norvegicus 81 LOC102551265 ENSRNOG00000030551 ENSRNOT00000042834 3 1 1 86 8 99777426 99777448 CTCAGGTCATGAAGTCATAACTC 59 99777493 99779210 TGGACTTCCATCTTCTGGAG 59 NA Rattus norvegicus 81 Rnf149 ENSRNOG00000013946 ENSRNOT00000018684 1 1 1 104 9 46299137 46299155 GGCTCACAGTTTGGAAGTC 59 46294660 46298049 ATCAACATCGATTCCCTTCTC 58 NA Rattus norvegicus 81 Slc26a9 ENSRNOG00000029514 ENSRNOT00000009742 1 1 1 80 13 48532668 48532823 AGTCATTGCCAAGACAGGT 59 48532867 48532885 ATCCTCTTCTCCTGCTTCC 59 NA Rattus norvegicus 81 Bcl6b ENSRNOG00000059956 ENSRNOT00000090338 1 1 1 80 10 56837918 56837940 AATAACTCCTACCTCTTCACACC 60 56837318 56837879 GCTCAAACACTCACTTCCTG 59 NA Rattus norvegicus 81 Slc25a24 ENSRNOG00000020470 ENSRNOT00000027765 2 1 1 83 2 211952307 211953846 GTCATGATGCAGGTTCACG 59 211953893 211953911 AGAACGGATTCCTCCTTCC 59 NA Rattus norvegicus 81 Tpst2 ENSRNOG00000000664 ENSRNOT00000000831 2 1 1 82 12 50348848 50348866 TGATCCGTACGCAAATCCA 60 50346627 50348802 AGTCTCCTTTCAAGACCCG 59 NA Rattus norvegicus 81 Trpv4 ENSRNOG00000001195 ENSRNOT00000001586 2 1 1 80 12 47712802 47718759 GGAAGGTCGTAGAGAAGCA 59 47718803 47718821 GCCGGTTGAAGACTTTGAG 59 NA Rattus norvegicus 81 Rps29 ENSRNOG00000028939 ENSRNOT00000041384 3 1 1 60 13 91334116 91334134 TGATCCGTAAATACGGGCT 59 91334158 91334176 ATGTCCTTCGCGTACTGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ptpn11 ENSRNOG00000030124 ENSRNOT00000046323 1 1 1 80 12 40895696 40915019 ATCCCGGAGATGGTTTCAC 60 40915063 40915081 AAACTGCCATCGACTCCTC 60 NA Rattus norvegicus 81 Klhl40 ENSRNOG00000019390 ENSRNOT00000026234 3 1 1 82 8 130418928 130419048 AGGCAAAGACAGGAAATGTC 59 130419093 130419111 TCTTCATGGGTGCTAGCTC 59 NA Rattus norvegicus 81 Mlh1 ENSRNOG00000033809 ENSRNOT00000081718,ENSRNOT00000064581 2 2 2 80 8 119488865 119489377 ATTGATGAGGAAGGGAACCTG 60 119488805 119488823 GAAGATAGGCAGTCCCTCC 59 NA Rattus norvegicus 81 Olr1766 ENSRNOG00000037506 ENSRNOT00000050717 3 1 1 60 X 136892368 136892386 AAACAGAGGGCTTTCTCCA 59 136892326 136892346 TCCCATAATAGAGACTGACCA 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ets1 ENSRNOG00000008941 ENSRNOT00000011925 3 1 1 81 8 33851634 33854292 TCCTGCAGAAAGAGGATGTG 60 33854336 33854354 TAATCCGAGGTGTAACGGG 59 NA Rattus norvegicus 81 Efhb ENSRNOG00000012618 ENSRNOT00000016911,ENSRNOT00000066582 3 2 2 80 9 54950 56045 AGCTTCCCAGGCTTATGAC 60 56088 56107 ATATTCTTTCTGCTCCCGGA 59 NA Rattus norvegicus 81 LOC100909792 ENSRNOG00000050466 ENSRNOT00000074681 3 1 1 60 2 168228103 168228122 ACATCATGCTTTCAGGTGAC 59 168228141 168228163 CCAAGACTGAACTGCAATATGAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100909885 ENSRNOG00000049136 ENSRNOT00000072964 3 1 1 144 2 115307408 115307429 TCAGCACTTGATACAACATGTG 59 115304243 115307308 GCCCATCATTTGTAGATTTCTAGG 60 NA InUTR Rattus norvegicus 81 Hspa4 ENSRNOG00000016596 ENSRNOT00000023628 3 1 1 80 10 38607090 38607813 AGTTTGTGAGTGAAGATGATCG 59 38607031 38607051 CTTCTCCATCTTCATACAGCC 58 NA Rattus norvegicus 81 Olr1467 ENSRNOG00000052661 ENSRNOT00000073603 3 1 2 90 10 59923352 59923370 TGGATTCCCATCTCCACAC 59 59923424 59934349 AACTTGGGCATTGTGACAG 59 NA Rattus norvegicus 81 Lrp1 ENSRNOG00000025053 ENSRNOT00000031005 2 1 1 80 7 70888027 70889565 GTGTGACAACGACAATGAC 57 70887965 70887983 CACTTGAACTGGGTACTGG 58 NA Rattus norvegicus 81 AABR07070669.1 ENSRNOG00000056409 ENSRNOT00000082411 1 1 1 79 8 79419441 79419460 CACATCCTCCTTCTCATCTG 58 79420547 79420565 GGCGGATTCCTTTGATGAG 59 NA DesignNoJunction Rattus norvegicus 81 Zmat5 ENSRNOG00000007849 ENSRNOT00000010332 3 1 1 109 14 84953926 84959955 GACATGTTCCGAGATGCAG 59 84961769 84961787 GAGAATCTGCAGTTGGAGC 59 NA Rattus norvegicus 81 Scpep1 ENSRNOG00000002358 ENSRNOT00000003219 1 1 1 80 10 76253181 76253888 TAAAGAATTCCAGACGGTTCC 58 76253121 76253140 AGTTCTAAACTGATGCCAGC 58 NA Rattus norvegicus 81 Hnf1a ENSRNOG00000001183 ENSRNOT00000001565 1 1 1 80 12 47408215 47408234 TCTGAAAGAGCTGGAGAACC 60 47408277 47418698 GGGTCCTCCTGAAGAAGTG 59 NA Rattus norvegicus 81 LOC100909485 ENSRNOG00000034120 ENSRNOT00000045802 2 1 1 60 X 18340802 18340825 GAATATACCAAAGAAGATGGCTCC 60 18340765 18340786 TGGCTTTAACTTGGTGAATGAC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07029989.1 ENSRNOG00000047607 ENSRNOT00000075322 3 1 1 82 10 62414340 62414362 AACACATCTTCTTGCTCTTCC 59 62414404 62414424 GTCAGTACTAATTGCCAGGAC 59 NA Rattus norvegicus 81 Crabp2 ENSRNOG00000048421 ENSRNOT00000072198 2 1 1 110 2 184883140 184883349 AGACCCTGTAAGAGTTTGGTG 60 184883421 184883439 ATTGGTCAGTTCTCGGCTC 60 NA Rattus norvegicus 81 Dlc1 ENSRNOG00000010780 ENSRNOT00000090477,ENSRNOT00000014924 2 2 2 80 16 59241518 59241539 AGGTCAAAGAGAAGTTCAAAGG 59 59241576 59242671 CTTCGCTTACCTTCTTATAGGAC 59 NA Rattus norvegicus 81 Klk1c6 ENSRNOG00000048630 ENSRNOT00000079624,ENSRNOT00000046377 3 2 2 84 1 99948450 99948565 CCTGGATTGGGAATTACCTG 58 99948385 99948406 CTCATTGTAGGCTTCGATACAC 59 NA Rattus norvegicus 81 LOC100361913 ENSRNOG00000020628 ENSRNOT00000027998 2 1 1 89 1 87191503 87191521 GAGTTTGACTTGGCTGCTG 60 87191313 87191333 CTTTAGAGGACAGTGTTTGGG 59 NA DesignNoJunction Rattus norvegicus 81 RT1-CE4 ENSRNOG00000039744 ENSRNOT00000064734 1 1 3 80 20 4918828 4919023 AGGAAGAGAAACACAGGTGG 60 4918536 4918554 GAGGGACACATCAGAGCTC 60 NA Rattus norvegicus 81 Dcaf12l2 ENSRNOG00000031533 ENSRNOT00000047171 1 1 1 60 X 130824298 130824318 ACCTATTGTGATGAGTTGTCC 58 130824258 130824277 CCAGGAAGGAAACATGAGAC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Srek1 ENSRNOG00000032735 ENSRNOT00000040533 2 1 1 80 2 33823305 33823323 CTCAAAGTCCAGGTCTAGC 57 33818855 33823263 CTGTTATGGGATCTACTCCTG 57 NA Rattus norvegicus 81 Pts ENSRNOG00000009250 ENSRNOT00000012434 2 1 1 80 8 54955329 54957592 CAAAGAATACATGGAGGAGGC 59 54955269 54955288 ACATCTGCAAAGTATGGCAC 59 NA Rattus norvegicus 81 Slc9a4 ENSRNOG00000015306 ENSRNOT00000065234 3 1 1 80 9 47315858 47315876 GATGAAACAGGCCATCGAG 59 47315918 47323109 ATCCTCTCAGACTGATAGGGT 59 NA Rattus norvegicus 81 Plcxd1 ENSRNOG00000049866 ENSRNOT00000072507,ENSRNOT00000073986 2 2 2 80 12 52641956 52641974 TTCCTGGAGACCAAGAAGG 59 52641411 52641429 ATAGCACAAGTTCTCGGTG 58 NA DesignNoJunction Rattus norvegicus 81 Ing2 ENSRNOG00000013480 ENSRNOT00000018689 3 1 1 144 16 47718543 47718562 GAGCTGGACAACAAATACCA 58 47723817 47723835 CATCTCCCAATTCTTGGCT 58 NA DesignNoJunction Rattus norvegicus 81 LOC100910577 ENSRNOG00000033583 ENSRNOT00000042498 3 1 1 103 7 9898079 9898097 CTGGAAACCTACTGGAACC 58 9898365 9898895 CAGTTGAAATACCTTCCATGAC 58 NA Rattus norvegicus 81 Shroom1 ENSRNOG00000007431 ENSRNOT00000074769 1 1 1 94 10 38821580 38821598 GTTCAGAAAGGACTGTGGC 59 38821737 38822354 AGTCAAGAACCTGGAAAGCT 59 NA Rattus norvegicus 81 LOC499331 ENSRNOG00000025644 ENSRNOT00000017133 1 1 1 60 1 234667125 234669677 CAGCCAGCACAATGAAGAC 60 234667083 234667103 TAGAGGGTTCCTCCAATACTG 58 NA DesignNoJunction Rattus norvegicus 81 RT1-CE2 ENSRNOG00000050183 ENSRNOT00000089657,ENSRNOT00000091344,ENSRNOT00000049310 1 3 3 87 20 4791226 4791244 AGATACCTGGAACTCGGGA 59 4790159 4790177 CATCACCTTCAGGTCTGGG 60 NA DesignNoJunction Rattus norvegicus 81 RT1-CE2 ENSRNOG00000050183 ENSRNOT00000089657,ENSRNOT00000091344,ENSRNOT00000049310 2 3 3 88 20 4791226 4791244 AGATACCTGGAACTCGGGA 59 4790158 4790176 ACATCACCTTCAGGTCTGG 59 NA DesignNoJunction Rattus norvegicus 81 Tsr1 ENSRNOG00000002980 ENSRNOT00000003992 1 1 1 80 10 61747463 61748281 GCCTTCCCACCTATATGCT 59 61748324 61748343 TTAGCTTCTTTCTGGCATCC 58 NA Rattus norvegicus 81 Polm ENSRNOG00000013647 ENSRNOT00000018319 2 1 1 80 14 86070592 86070770 TTGATCCTGAGCGGAAGAC 60 86070530 86070551 GAGGAAGATACTTGAGACCCAG 60 NA Rattus norvegicus 81 Sirt4 ENSRNOG00000001151 ENSRNOT00000084421 2 1 2 96 12 46869877 46870175 GGGAGTGGACAGAATGAGG 60 46870235 46870253 TAACCCTGTGGATCCATGG 59 NA InUTR Rattus norvegicus 81 Sirt4 ENSRNOG00000001151 ENSRNOT00000084421 3 1 2 96 12 46869878 46870176 GGAGTGGACAGAATGAGGG 60 46870235 46870254 ATAACCCTGTGGATCCATGG 59 NA InUTR Rattus norvegicus 81 Zhx1 ENSRNOG00000006412 ENSRNOT00000008454 3 1 1 82 7 97937671 97937691 CCAAGTACCTCATTTGAAGGG 59 97923390 97937627 GCACAACTCCAATCACCTG 59 NA InUTR Rattus norvegicus 81 Dnm2 ENSRNOG00000007649 ENSRNOT00000066007,ENSRNOT00000010947,ENSRNOT00000065028 3 3 3 80 8 22532321 22532339 ATACGGGATGTGGAGAAGG 59 22532382 22534333 CTTGTAGACGTTCCTCTGCT 60 NA Rattus norvegicus 81 Scn7a ENSRNOG00000029342 ENSRNOT00000041096 1 1 1 80 3 52784872 52789160 GAATGAAGGTGGTTCTGAGAG 59 52784812 52784830 GCCAGATCATTAGGCAGAC 58 NA Rattus norvegicus 81 Ficd ENSRNOG00000059799 ENSRNOT00000082809 3 1 1 127 12 48662167 48662931 ACTGGAGCCACAGATTCTG 59 48662058 48662076 AGACTGAGACCCATTTGGG 59 NA InUTR Rattus norvegicus 81 Wrn ENSRNOG00000015440 ENSRNOT00000058805 2 1 1 80 16 62599084 62602258 AAATAGTGTTCAGACAGACCTC 58 62602299 62602317 GCTTTGTTCTCCATCTCCT 57 NA Rattus norvegicus 81 Olr104 ENSRNOG00000015876 ENSRNOT00000021254 2 1 1 60 1 168587152 168587170 CTGGCTCTCCATTCCTCTG 60 168587110 168587128 GATCAAGCTATTCCCTGCC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Klhl38 ENSRNOG00000007896 ENSRNOT00000079961,ENSRNOT00000010484 1 2 2 80 7 98194923 98194941 GCAGTAAAGGACCAAAGGC 59 98189986 98194880 GTGGTAAACCTGGATAAGGC 58 NA Rattus norvegicus 81 Ctdspl ENSRNOG00000046257 ENSRNOT00000075793 1 1 1 168 8 127712685 127716174 ATACACCAGGTGTACGTGC 60 127719866 127719884 ATTCTCTGAAGAGTCGGGC 59 NA InUTR Rattus norvegicus 81 Pnrc2 ENSRNOG00000009248 ENSRNOT00000080069,ENSRNOT00000012258 1 2 2 80 5 154222068 154222513 AAGCAGACTGAAAGGTGAC 58 154222006 154222027 CATTTCTAGATTGAGGGTCTGG 58 NA InUTR Rattus norvegicus 81 LOC100911649 ENSRNOG00000022798 ENSRNOT00000029573 3 1 1 80 16 12977075 12977237 TTGAACAGGACATGAGAAAGC 59 12977279 12977297 GCACCAAGTTGTTCACCAG 60 NA Rattus norvegicus 81 MGC94335 ENSRNOG00000015983 ENSRNOT00000021533 2 1 1 80 9 64101581 64103664 CAGTGCGAGTTATGAATTTCAG 58 64103705 64103723 TTTGAGTGCTCAATCCGTG 59 NA Rattus norvegicus 81 Cenpw ENSRNOG00000042944 ENSRNOT00000065677 2 1 1 81 1 29918025 29918046 GAGTCTAGGACAAATGCTTGTG 59 29918087 29919355 TCAGAATTACCTTTGCTGCC 59 NA Rattus norvegicus 81 Tspan3 ENSRNOG00000016474 ENSRNOT00000022419 1 1 1 80 8 60816630 60816648 TCTTCATCCTGCTCTTGGT 58 60816085 60816587 CATTCTCCACCTTTGCTCTG 59 NA Rattus norvegicus 81 Tspan3 ENSRNOG00000016474 ENSRNOT00000022419 2 1 1 80 8 60816631 60816649 GTCTTCATCCTGCTCTTGG 58 60816086 60816587 ATTCTCCACCTTTGCTCTG 57 NA Rattus norvegicus 81 Tspan3 ENSRNOG00000016474 ENSRNOT00000022419 3 1 1 81 8 60816630 60816648 TCTTCATCCTGCTCTTGGT 58 60816084 60816585 TCATTCTCCACCTTTGCTC 58 NA Rattus norvegicus 81 Ankrd44 ENSRNOG00000021384 ENSRNOT00000078800,ENSRNOT00000015432 1 2 2 80 9 61343191 61355100 CGATGTGAACATTCAGAGTAAGG 60 61343133 61343151 GTTTGTGACCGTGTGAACC 60 NA Rattus norvegicus 81 Tas1r2 ENSRNOG00000061876 ENSRNOT00000080108,ENSRNOT00000088766,ENSRNOT00000079516,ENSRNOT00000092026 3 4 6 105 5 158103015 158103034 GTAATCCAGTTTGTGCCAGC 60 158103101 158105127 GTTTAAAGGTGGGCACACTG 60 NA Rattus norvegicus 81 Erbb2ip ENSRNOG00000047137 ENSRNOT00000075196 3 1 1 80 2 33918546 33920659 TGAATTCACAAGAAGTGCCTG 59 33918486 33918506 AAGTCAGTCTATTGCCATCCA 59 NA Rattus norvegicus 81 Ocln ENSRNOG00000018297 ENSRNOT00000024674,ENSRNOT00000084667 1 2 2 80 2 30536865 30536885 ACTATGAAACCGACTACACGA 59 30534398 30536826 TGATAGGTGGATATTCCCTGAG 59 NA Rattus norvegicus 81 Cpt1a ENSRNOG00000014254 ENSRNOT00000019652 1 1 1 80 1 218615455 218619081 ATTTGTGGGAGTATGTCATGG 58 218619122 218619141 GGTTGGTGTCTCCTTTACAG 58 NA Rattus norvegicus 81 Pdcd6ip ENSRNOG00000008981 ENSRNOT00000012114 2 1 1 80 8 121956149 121956169 GGACCCTCAGTCTTATTATGC 58 121954266 121956109 TGGCATCCTTCATCTTATCTC 57 NA Rattus norvegicus 81 Man1c1 ENSRNOG00000017087 ENSRNOT00000022956 1 1 1 80 5 152812427 152812446 GAGCTGAAAGAGGAGTTCCA 60 152810551 152812386 CAAAGATGCTTCTCCACTCAC 59 NA Rattus norvegicus 81 Mrgprf ENSRNOG00000013426 ENSRNOT00000017948 1 1 1 80 1 218470102 218474422 CCAGAACAAGATGTGTCCT 57 218474466 218474484 GTGGCAATCTGTTCAATGG 57 NA Rattus norvegicus 81 RGD1561444 ENSRNOG00000026979 ENSRNOT00000031893 1 1 1 80 8 23439176 23439196 GACCCAAATACAAGATGGGAC 59 23439236 23446010 TCTTCGTAAGATACCTGGCTG 59 NA Rattus norvegicus 81 Carns1 ENSRNOG00000018603 ENSRNOT00000025092 1 1 1 83 1 219421233 219421251 CTTGTGCATTCTGGGTTCC 59 219420904 219421187 CAAAGGAGCATGTTTCCAGG 60 NA Rattus norvegicus 81 Fgl1 ENSRNOG00000010714 ENSRNOT00000090644,ENSRNOT00000014248,ENSRNOT00000090763 2 3 3 80 16 54174585 54183969 TGCTGACTATGCAAGGAGAC 60 54184012 54184030 TTTCGTATTGTGCGAAGCG 60 NA Rattus norvegicus 81 Rcn2 ENSRNOG00000015780 ENSRNOT00000021817 3 1 1 80 8 60721153 60724233 TTGACTATATGACGGAGTTCG 58 60724274 60724293 CTTCCAGACTAACAAACCCA 58 NA Rattus norvegicus 81 Spsb4 ENSRNOG00000012862 ENSRNOT00000017363 1 1 1 96 8 104891723 104891741 CTATACCCGGTGGTGAGTG 59 104842285 104842303 ATAGGTCCATCAACGGCAG 60 NA DesignNoJunction Rattus norvegicus 81 Fndc7 ENSRNOG00000020421 ENSRNOT00000027690 2 1 1 80 2 211663434 211663453 TGAAGCTTACTTTCTGCCCA 60 211656653 211659381 TCCCTCTGTAAATCACCATCC 59 NA Rattus norvegicus 81 Olr142 ENSRNOG00000016954 ENSRNOT00000022740 3 1 1 60 1 169229500 169229521 TGTCTATTTGTTTGTACCTCCC 58 169229461 169229479 CTCCTTGGTCTTCACACTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ncr1 ENSRNOG00000018458 ENSRNOT00000025080 2 1 1 80 1 73181069 73181197 TCAGGATTGCAGAAGGACTC 60 73181008 73181026 CACGATTATGCATGCCAGG 60 NA Rattus norvegicus 81 Cyp11a1 ENSRNOG00000008074 ENSRNOT00000010831 2 1 1 80 8 62799856 62801710 CTGTTTAAGAGTTCAGATGCCT 59 62801751 62801769 GTTCTTGATGGAGTCAGGG 58 NA Rattus norvegicus 81 Zfp26 ENSRNOG00000025937 ENSRNOT00000078192,ENSRNOT00000038084 3 2 2 82 8 21453156 21453176 ATTTAAACCCAGCCTGATCTC 58 21452367 21453115 TTTCCCATTCTTGGAGAATTCC 59 NA Rattus norvegicus 81 Adamts6 ENSRNOG00000012655 ENSRNOT00000016997,ENSRNOT00000072577 3 2 2 80 2 34559322 34559341 AATTTCTGTGACCCTGACAG 58 34559384 34568087 AATGAACCATTCAGGTGGG 58 NA Rattus norvegicus 81 Slc44a1 ENSRNOG00000055089 ENSRNOT00000082108,ENSRNOT00000083983 1 2 2 80 5 70292370 70302007 TTGGGATGGGATTTATTTGTGG 59 70302046 70302066 TTCCATAGCTGTCGTATCCTG 60 NA Rattus norvegicus 81 Slc44a1 ENSRNOG00000055089 ENSRNOT00000082108,ENSRNOT00000083983 2 2 2 80 5 70338046 70338064 CTTCCGAGTACACTCTGAC 57 70338107 70345598 AGAATGGAATAGGTGCACTG 58 NA Rattus norvegicus 81 Ackr2 ENSRNOG00000019472 ENSRNOT00000026343 2 1 1 91 8 130538764 130541013 AAGCATCAGAACTCGAGAC 57 130541067 130541086 CATAGTCGTAGATGGAGCTG 57 NA InUTR Rattus norvegicus 81 Alg14 ENSRNOG00000011528 ENSRNOT00000015354 1 1 1 80 2 224886702 224886722 CGTGTTCACTACCTTGTACTC 59 224886763 224930490 CCATTACACAGCACCAAGTC 59 NA Rattus norvegicus 81 Ccser2 ENSRNOG00000022781 ENSRNOT00000016494 2 1 1 80 16 14142616 14142634 ACCATTACCACCTTAGCCA 58 14131507 14142576 ATTCTCTATAAGGAGAGCCTCTG 59 NA Rattus norvegicus 81 A4gnt ENSRNOG00000042649 ENSRNOT00000039690 1 1 1 80 8 107859713 107859731 TTTCTTCGTGCCTTTGGAC 59 107859773 107865188 CTACTGCTGTTGACTTTGGTG 60 NA Rattus norvegicus 81 Dpy19l1 ENSRNOG00000026589 ENSRNOT00000036738 2 1 1 80 8 25591195 25592215 GATGCAGGTCTAAGAGCCA 59 25591133 25591153 CAATTCCTTCTTCACGTCCTC 59 NA Rattus norvegicus 81 RGD1561520 ENSRNOG00000022407 ENSRNOT00000037130 1 1 1 89 2 52171511 52171532 CTTACTTCTCTATCGGTTTCCT 57 52171321 52171461 TTTCCTCCGCCAATTTGTG 59 NA DesignNoJunction Rattus norvegicus 81 Clasp2 ENSRNOG00000009161 ENSRNOT00000091980,ENSRNOT00000012545 1 2 2 80 8 122115282 122119371 CCTATGCATCACTAGAGGAC 57 122123056 122123074 TAGAAAGCTTGGCTCTCAC 57 NA Rattus norvegicus 81 Isl1 ENSRNOG00000012556 ENSRNOT00000017305 2 1 1 81 2 48497613 48497631 TTGGACGAAAGCTGTACCT 59 48494639 48497569 ATTTGATCCCGTACAACCTG 58 NA Rattus norvegicus 81 Zmynd19 ENSRNOG00000007752 ENSRNOT00000010270 3 1 1 84 3 2162235 2167197 CTCCAGCAAACAAAGGGAG 59 2167240 2167263 GACAGGGAATTGTTCTTCTATAGG 59 NA Rattus norvegicus 81 Pltp ENSRNOG00000016488 ENSRNOT00000022594 3 1 1 80 3 161312403 161312421 TCTTTGACTCTGCCATGGA 59 161312246 161312360 GATCATTTGGCACCTTGTCC 60 NA Rattus norvegicus 81 Ccl28 ENSRNOG00000059640 ENSRNOT00000084486,ENSRNOT00000082614 1 2 2 80 2 52397471 52397491 TCTGGAAAGAGTGAATTCGTG 58 52397530 52402884 CGTTTAACATGAAGGATGACAG 58 NA Rattus norvegicus 81 Ccl28 ENSRNOG00000059640 ENSRNOT00000084486,ENSRNOT00000082614 2 2 2 80 2 52397470 52397491 TTCTGGAAAGAGTGAATTCGTG 59 52397529 52402883 GTTTAACATGAAGGATGACAGC 58 NA Rattus norvegicus 81 Shb ENSRNOG00000011503 ENSRNOT00000015338 1 1 1 80 5 61037194 61037212 AAGCAGGAAAGGGTGAGAG 59 61004009 61037152 TCTCTTGCCTCTGGAATTCTG 60 NA Rattus norvegicus 81 LOC691110 ENSRNOG00000038477 ENSRNOT00000033209 3 1 1 84 8 61903286 61903306 CTTCAGGATAGTGGTCTGGAG 59 61903352 61904789 GTAGATGAGCTGGAGCTGG 60 NA Rattus norvegicus 81 Egfl8 ENSRNOG00000000436 ENSRNOT00000068712,ENSRNOT00000000499 2 2 2 80 20 4379800 4379995 CAAAGAAAGTTTGGGAGTGTG 58 4379740 4379759 TACACTGGTTGACTGTAGGA 58 NA Rattus norvegicus 81 Spata21 ENSRNOG00000009058 ENSRNOT00000012147 1 1 1 80 5 159636746 159636766 AGTAGAGAACTTGGAAGTCCC 59 159636807 159637348 AGATTGGCAGCATAGTTCTG 58 NA Rattus norvegicus 81 Rtel1 ENSRNOG00000027513 ENSRNOT00000087279,ENSRNOT00000055030 3 2 2 80 3 176849327 176849345 GGAGTCCGTACCCTTATCC 59 176849387 176849571 TGGGAATGGAATTTGCATCTC 59 NA Rattus norvegicus 81 Rnf26 ENSRNOG00000007720 ENSRNOT00000010134 2 1 1 60 8 48448859 48448879 GCCTATGTGGTCAATAGTCTG 58 48448819 48448838 GGGAGAAGAAGTTCTGAGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Ghr ENSRNOG00000015654 ENSRNOT00000046951,ENSRNOT00000081558,ENSRNOT00000021081 3 3 4 81 2 53166095 53179746 ATGAAATAGTGCAACCTGATCC 59 53166035 53166053 ATATCTCCACGGATCCCAG 58 NA Rattus norvegicus 81 Timm10b ENSRNOG00000000320 ENSRNOT00000000351 2 1 1 187 20 48309840 48309858 CTAGCTAGCTGTCCCTGAC 59 48300213 48309517 TCCCAGTATCTCACAGCAC 59 NA InUTR Rattus norvegicus 81 RGD1304595 ENSRNOG00000008712 ENSRNOT00000085461,ENSRNOT00000011799 1 2 2 80 5 79398798 79400909 AGAGTGTGATACAGCTCTGG 59 79400950 79400970 TCATTTCTTGGACATGATCGG 59 NA Rattus norvegicus 81 Mpi ENSRNOG00000018898 ENSRNOT00000025783 3 1 1 80 8 62324501 62324764 GAAGATAGAGGTCCCTGGC 59 62324439 62324457 CCTTGGACCAACAGAAGGA 59 NA Rattus norvegicus 81 Lars2 ENSRNOG00000004760 ENSRNOT00000087488,ENSRNOT00000068233 2 2 2 80 8 132526436 132526866 CATAGATTTCACAGGTCCTACTC 58 132526906 132526924 GACTTGCTCATCTTCTCCC 58 NA Rattus norvegicus 81 Atg5 ENSRNOG00000000322 ENSRNOT00000080283 1 1 2 80 20 49319425 49325062 CCCTGAAATGGCATTATCCA 58 49325104 49325123 GAAATGTGATGTTCCAAGGC 58 NA Rattus norvegicus 81 Olr1705 ENSRNOG00000048714 ENSRNOT00000071933 2 1 1 60 20 1021941 1021960 AGTGATGTCTTATGACCGCT 59 1021981 1022001 CATGATGACCTCATAGTGCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC367195 ENSRNOG00000031912 ENSRNOT00000050963 3 1 1 60 8 132026817 132026835 ACGAGGAAGCTCATCTGTG 60 132026775 132026793 GGTACATCTGTCTGCACTC 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Lrrc3 ENSRNOG00000001217 ENSRNOT00000001632 1 1 1 60 20 11490090 11490108 ATGAAATTGCCTGCCACAC 59 11490132 11490150 ACCTGGATCAGAGGTTTGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Tspyl1 ENSRNOG00000000549 ENSRNOT00000000660 3 1 1 60 20 41084300 41084318 GCTTCTTCACCTGGTTCTC 58 41084341 41084360 ATAATCTCGGCGATCCTGTC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100911156 ENSRNOG00000000582 ENSRNOT00000000710 2 1 1 80 20 48755567 48756781 CTCCCACGTATCCAGATACG 60 48755506 48755525 TGGCGATTTCAGAAAGATGC 59 NA Rattus norvegicus 81 Olr1693 ENSRNOG00000000749 ENSRNOT00000000976 2 1 1 60 20 831225 831245 TCTGCTTCATCTCTGTTACTG 58 831185 831205 AAACCATTGTCCATGAGTGAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 LOC100364116 ENSRNOG00000030426 ENSRNOT00000050041 3 1 1 60 20 8484550 8484569 TCGTTTCCAGATGAGAATCC 57 8484590 8484610 AACAATCTCTGAAGGACTGTG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olfr873 ENSRNOG00000046516 ENSRNOT00000071833 1 1 1 60 8 20994509 20994528 ATCATCCTGGCTGTCAACTC 60 20994468 20994488 TGCAGAGGAAGAAGTACATGG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pomgnt2 ENSRNOG00000019492 ENSRNOT00000026363 2 1 1 60 8 130616820 130616838 CTGAAAGGCTGAACGTGAG 59 130616778 130616798 AAGACCAGAATGTATTCCTCC 57 NA DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07044583.1 ENSRNOG00000060674 ENSRNOT00000091856 2 1 1 81 20 11556218 11556236 GTCTGTCTGCTCTGATGCT 60 11556155 11556173 ACAGCTACAAGGCTCACAG 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Vdac3 ENSRNOG00000019277 ENSRNOT00000026197 2 1 1 80 16 74303672 74305521 CCAAACACAGGGAAGAAGAG 59 74305564 74305582 TATGTCAACGTTACTGCCC 58 NA Rattus norvegicus 81 LOC100910382 ENSRNOG00000050612 ENSRNOT00000073543 3 1 1 60 20 734857 734877 ATCCTTCTCTGTCACAATTCC 58 734898 734917 TATGTAGCCACTTTGAGCCA 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Olr1697 ENSRNOG00000046355 ENSRNOT00000066600 1 1 2 80 20 1053287 1108980 GAAATGCTTAGAGATGAGTGTC 57 1053228 1053247 AACTTGGTAAATGCAAAGCG 58 NA Rattus norvegicus 81 Clic2 ENSRNOG00000000728 ENSRNOT00000000955 2 1 1 90 20 295597 304760 TTTGTGAAGGCTGGAAGTG 58 304811 304832 ATTTAACTCCCTTAAGCCAGAG 58 NA Rattus norvegicus 81 Spag11bl ENSRNOG00000031111 ENSRNOT00000046821,ENSRNOT00000047761 2 2 2 99 16 75146134 75147255 CTTACCATGAGCCTGGACC 60 75147318 75147336 TAGCCCACTTGTGTTTCCA 59 NA Rattus norvegicus 81 Smtnl1 ENSRNOG00000007516 ENSRNOT00000009903 1 1 1 80 3 72211356 72211375 TTGACTATGCAGAGCTGGAC 60 72207505 72211313 AGTCGGCTAGTTTCTCTGC 60 NA Rattus norvegicus 81 Uchl3 ENSRNOG00000046120 ENSRNOT00000028960 3 1 1 80 3 171121584 171121980 GATGCACTTTGAATCAGGGTC 60 171121524 171121543 TGTCTGGCTCTTTCTTCAGG 60 NA Rattus norvegicus 81 Tmem82 ENSRNOG00000011970 ENSRNOT00000016176 2 1 1 89 5 160171400 160171419 CTGGGTATCTTTGTCTCCCT 59 160171086 160171348 TGGAAAGCCCTGTATCTGG 59 NA Rattus norvegicus 81 Asap3 ENSRNOG00000049714 ENSRNOT00000072864 1 1 1 80 5 154578779 154578798 GAACAACATCGTCTCCTTCC 59 154578838 154579796 AGATGCTTCTTGGAATCATGTC 59 NA Rattus norvegicus 81 Defb1 ENSRNOG00000013768 ENSRNOT00000018427 1 1 1 60 16 75309002 75309020 CTTCTCCCAGATGGAGCTG 60 75294614 75294632 TTGATCTGTTCTGCGTCCA 59 NA DesignNoJunction Rattus norvegicus 81 Col15a1 ENSRNOG00000039197 ENSRNOT00000017217 3 1 1 80 5 64519261 64519281 GGATATCCCTCTGGAAATGGT 59 64519431 64522133 CCTTTGGGTCCCATAGGTC 60 NA Rattus norvegicus 81 Stx16 ENSRNOG00000005281 ENSRNOT00000088286,ENSRNOT00000066279 3 2 2 81 3 172174696 172175474 GACGGAGTAGACGAAATACAG 58 172175515 172175535 AATGCTTATCATGAAGGCTGG 59 NA Rattus norvegicus 81 Bag4 ENSRNOG00000042560 ENSRNOT00000066901 1 1 1 80 16 71075131 71075153 AAGAAGTAGAGGAGTTTGGGA 58 71075192 71075213 GTTCTAACAGTTCCTTTGTCAG 57 NA Rattus norvegicus 81 Bmp7 ENSRNOG00000053384 ENSRNOT00000084990 3 1 1 81 3 170929760 170954994 TTCGTCAACCTAGTGGAGC 59 170929697 170929717 TCTTGGAAAGATCAAACCGGA 60 NA Rattus norvegicus 81 Pigu ENSRNOG00000025181 ENSRNOT00000038809 1 1 3 80 3 150877549 150877678 TAACAAGGTCGTCACTCCTG 60 150877488 150877508 TCATCCAACACCTCAGATTCC 60 NA Rattus norvegicus 81 Pramef17 ENSRNOG00000042820 ENSRNOT00000048366 1 1 1 80 5 162440781 162441561 TGAGTTACTCAGGTGTCTGG 59 162440720 162440740 GACTCCAAATCTGACTGAGAG 58 NA Rattus norvegicus 81 Defb38 ENSRNOG00000032089 ENSRNOT00000050296 1 1 1 86 16 75058625 75061685 CAACCAAGCTACTGATCAGG 58 75061733 75061752 GAAATAGACAACCATGGGCA 58 NA Rattus norvegicus 81 Defb11 ENSRNOG00000038151 ENSRNOT00000058063 2 1 1 81 16 75149579 75156274 CTATGACACTCCAGTTGTTGG 59 75149518 75149539 GTAACAGTACCCTCCCTTACTG 60 NA Rattus norvegicus 81 Prosc ENSRNOG00000013751 ENSRNOT00000018369 3 1 1 80 16 69168898 69168916 GGCAGAAGAAAGGTTCTCC 58 69166694 69168854 GAAGGCCGTGTTTACTGTC 59 NA Rattus norvegicus 81 Defb21 ENSRNOG00000023154 ENSRNOT00000031613 3 1 1 92 3 148047686 148048769 GTGATCCCAGACTATAGTGCT 59 148048822 148048841 TGTTTCCATGACCATTTCCC 59 NA Rattus norvegicus 81 Defb50 ENSRNOG00000033972 ENSRNOT00000046156 1 1 1 96 16 75249858 75261953 TTGTCAAAGGTGTTGGCAG 59 75249780 75249798 TAGAAAGGGCAATTGTCGC 59 NA Rattus norvegicus 81 Birc7 ENSRNOG00000043311 ENSRNOT00000068252 2 1 1 62 3 176441402 176441421 TTTGTGGAAAGAATCCAGGC 59 176441446 176441547 CTGTTCTTCCCGTTGTTCC 59 NA DesignNoJunction Rattus norvegicus 81 Fnta ENSRNOG00000014462 ENSRNOT00000019594 2 1 1 80 16 70844379 70846089 ATCAAGTTTGGCACCATAGG 58 70846132 70846150 GGATATCGGCGATGAACTC 58 NA Rattus norvegicus 81 Defb52 ENSRNOG00000038129 ENSRNOT00000043486 1 1 1 80 16 75574263 75574379 TTCTTCAACAACGATTACGGG 59 75574419 75574439 ACGAGTACAGTTTGTTCTCCT 59 NA Rattus norvegicus 81 Cln8 ENSRNOG00000012565 ENSRNOT00000016756 1 1 1 147 16 79831880 79838178 CCTGAATGCAGGTTGAGGA 60 79831751 79831769 ATGGTTGCTCACAGGAGTC 60 NA InUTR Rattus norvegicus 81 Pde1a ENSRNOG00000054212 ENSRNOT00000090547,ENSRNOT00000084299 2 2 2 80 3 66839179 66839200 CCTACAGACTTATGCAAGAGGA 59 66836275 66839140 CTAAGTTCCGAAGATCCCTCC 60 NA Rattus norvegicus 81 Mrps31 ENSRNOG00000011839 ENSRNOT00000015790 3 1 1 80 16 74483823 74483843 TTCAGTTTGACGAAGAAGTGG 59 74481256 74483784 CCTTGAACAAACATTTCCTCCT 59 NA Rattus norvegicus 81 LOC681180 ENSRNOG00000046576 ENSRNOT00000074550,ENSRNOT00000050464 2 2 2 86 16 66230931 66230950 AAGTGTCAATTCGAGAGGGA 59 66230999 66232359 CAATTCGACATCCAGCCTG 59 NA Rattus norvegicus 81 Gmeb2 ENSRNOG00000013339 ENSRNOT00000044026,ENSRNOT00000018237 2 2 2 80 3 176768442 176768460 AGACAGCAGAGCTAACCTC 59 176762332 176768401 ACATGTTCATCGTACTGAACAC 59 NA Rattus norvegicus 81 Atp11a ENSRNOG00000017154 ENSRNOT00000023163,ENSRNOT00000089447 1 2 2 80 16 82041428 82045144 CATCAAGCAGGGTTATGAAGAC 60 82041369 82041387 TGTTGAATGAAGTGCACGG 59 NA Rattus norvegicus 81 Tnks1bp1 ENSRNOG00000009195 ENSRNOT00000012209 2 1 1 81 3 72481959 72481977 CTAAGTCCTGCAAGGTCCC 60 72482022 72482273 GATCCTTCTGACCCTGAGG 59 NA Rattus norvegicus 81 Bpifb3 ENSRNOG00000013398 ENSRNOT00000055349 2 1 1 80 3 149409751 149409771 CCTCTTCAACACTGTGTTTGG 60 149409812 149411224 TTTCTGGGAACCATCTCAGG 60 NA Rattus norvegicus 81 Mmp24 ENSRNOG00000047028 ENSRNOT00000092194,ENSRNOT00000073642 1 2 2 80 3 151347875 151349518 TGTGTTTAAGGATCGCTGG 58 151349559 151349580 CAGAATTGTTCAATCTGCATGG 59 NA Rattus norvegicus 81 Olr716 ENSRNOG00000046907 ENSRNOT00000074631 1 1 1 80 3 78621120 78621139 ATGTACTTCTTCCTTGCCTC 57 78620820 78621079 CAAGTCTACAATCAACTTGGG 57 NA Rattus norvegicus 81 Entpd2 ENSRNOG00000013102 ENSRNOT00000017829 1 1 1 80 3 2621642 2622513 AGACATGGACTGAACTTCAGG 60 2622553 2622573 GTATGAACATGGCTACAGCAC 60 NA Rattus norvegicus 81 Wfdc15b ENSRNOG00000028779 ENSRNOT00000047560 3 1 1 80 3 160608167 160608185 CCCTCTACTCACAGTGACC 59 160607963 160608126 GGTTTGGATAAAGCCTTCTTCC 60 NA Rattus norvegicus 81 AC114391.2 ENSRNOG00000061751 ENSRNOT00000058039 3 1 1 60 16 75498852 75498871 GAGATAAAGGCACTGCTCTC 58 75498309 75498327 GTTCCGATTCTGCAAGAGC 59 NA DesignNoJunction Rattus norvegicus 81 Pcid2 ENSRNOG00000025222 ENSRNOT00000044085 3 1 1 80 16 81764106 81765974 TGATAGTCCAATCATTCCTTCG 58 81767632 81767650 GTGCTACTGCGTACATGAC 59 NA Rattus norvegicus 81 Mir147 ENSRNOG00000036445 ENSRNOT00000054556 3 1 1 61 3 114775351 114775370 TAGTGGAAACACTTCTGCAC 58 114775394 114775412 GTAGCAGAAGCATTTCCGC 60 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Pacsin3 ENSRNOG00000014204 ENSRNOT00000057176,ENSRNOT00000080266 1 2 2 80 3 80079252 80079271 GCGACTTCTCTTCTTCAAGG 59 80079314 80079435 AGCTCATGGAACTTGTCAC 58 NA Rattus norvegicus 81 Zmiz1 ENSRNOG00000010488 ENSRNOT00000014004 3 1 1 80 16 1949385 1950794 TTCACTGGATCTACTGCCG 59 1950838 1950856 CTATTGCTTGGAAGGTCGG 58 NA Rattus norvegicus 81 LOC367515 ENSRNOG00000049519 ENSRNOT00000071923 1 1 2 80 19 36278300 36326971 AAGGCTATAAGTACATAGTGACTGG 60 36278244 36278262 ATCTAGCCACCAACTTCCC 59 NA Rattus norvegicus 81 LOC367515 ENSRNOG00000049519 ENSRNOT00000082726 2 1 2 80 19 36270937 36326961 GTACATAGCACCCTTCCTACC 60 36270877 36270898 TGATTCATCAGATGAGGGAGTC 60 NA Rattus norvegicus 81 Vav3 ENSRNOG00000020485 ENSRNOT00000027813 1 1 2 80 2 212564683 212564704 CTACAGTTTCCATACAAGGAGC 59 212564745 212582939 TTTGGGACTTAGCAAGCTG 58 NA Rattus norvegicus 81 Megf6 ENSRNOG00000000156 ENSRNOT00000055386,ENSRNOT00000091417,ENSRNOT00000000169 3 3 3 141 5 171571046 171616776 AGCTTGTGAACACTCTTGC 59 171616881 171616899 CTTCTCACAGAACTGGCCA 60 NA Rattus norvegicus 81 Thtpa ENSRNOG00000018105 ENSRNOT00000034073,ENSRNOT00000087430 2 2 2 108 15 33756373 33757522 CAGTAGCATGCTTGGAGTG 59 33757594 33757612 ACTGTCTGCTTCTAGCAGG 59 NA Rattus norvegicus 81 Exosc8 ENSRNOG00000051623 ENSRNOT00000086214 1 1 2 120 2 143928167 143929006 CAGGGAAGACTACGATGGG 59 143926779 143926798 ATTGACTTCCGCTAAAGCAG 59 NA Rattus norvegicus 81 Slmap ENSRNOG00000011307 ENSRNOT00000091513 1 1 3 107 16 2152015 2158119 CTTTACAAGAGCGCTTGCT 59 2142282 2142300 CCACTTTGGTTAGATGCCC 59 NA Rattus norvegicus 81 RGD1563714 ENSRNOG00000031494 ENSRNOT00000089166 1 1 2 112 5 136086853 136086871 GACTCTCAAGACTGCCCAG 60 136074951 136083995 TCGAAGAGTCTTCATACTGCA 59 NA Rattus norvegicus 81 Timm10b ENSRNOG00000050846 ENSRNOT00000075892,ENSRNOT00000075597,ENSRNOT00000076631 2 3 3 147 1 170471305 170471466 AACTGAGAAACTTGCGAGAC 59 170471745 170471763 GAATGGATGAGCTTCCCAG 58 NA Rattus norvegicus 81 Clu ENSRNOG00000016460 ENSRNOT00000091612 2 1 3 103 15 42664303 42664321 GATGCTCAACACCTCATCC 58 42664388 42664407 GAGACCCGAAGTACTGGTC 59 NA Rattus norvegicus 81 Nars2 ENSRNOG00000011476 ENSRNOT00000015784 3 1 2 84 1 161995776 161995795 TGTGTCACCAGTTCATAGCT 59 161997558 162001506 GCTTCTGCATAAGAGATGATTAGG 60 NA Rattus norvegicus 81 Lrmp ENSRNOG00000029308 ENSRNOT00000049474 2 1 2 81 4 179410770 179410788 CAATGCTGACAGACTCCAG 58 179412625 179417759 AGTTCCTCACTTGTTTCTGG 58 NA Rattus norvegicus 81 Slc6a9 ENSRNOG00000019484 ENSRNOT00000085527 1 1 2 86 5 136683692 136690062 CAGAACAGAATGGTGCTGTG 60 136690111 136690129 CAAACTCGATCTGGTTGCC 59 NA Rattus norvegicus 81 Tpm3 ENSRNOG00000017441 ENSRNOT00000023567 1 1 3 88 2 189440270 189450009 CTTGGAAGATAAGCTGAAGTGC 60 189450058 189450076 ACATCTCGTTCAGGTCCAG 59 NA Rattus norvegicus 81 Tpm3 ENSRNOG00000017441 ENSRNOT00000023567 2 1 3 89 2 189440269 189450008 ACTTGGAAGATAAGCTGAAGTG 59 189450058 189450076 ACATCTCGTTCAGGTCCAG 59 NA Rattus norvegicus 81 Tpm3 ENSRNOG00000017441 ENSRNOT00000023605 2 1 3 82 2 189440261 189448844 CATTGATGACTTGGAAGAGCG 60 189448888 189448906 CATGCAGCGTTAGCTTCAG 60 NA Rattus norvegicus 81 Emr4 ENSRNOG00000050325 ENSRNOT00000073659 2 1 3 92 9 8091224 8091244 TTCTATGCTGCTTATCTGGTC 58 8093278 8093301 TGAGTGCTATTGAAGATGGC 58 NA Rattus norvegicus 81 Simc1 ENSRNOG00000016932 ENSRNOT00000064274,ENSRNOT00000044559 3 2 3 100 17 10617655 10618280 AAATCCAACAGCTGCATCC 59 10611063 10611081 TCGTCCAGGTAAAGTTTGC 58 NA Rattus norvegicus 81 Abi3bp ENSRNOG00000001627 ENSRNOT00000047817,ENSRNOT00000002220 2 2 7 107 11 46253392 46288168 AAGAGTCAAACCTGCTCCC 60 46248784 46248803 GTATGCAGGGATCCCTTAGG 60 NA Rattus norvegicus 81 Zfp84 ENSRNOG00000029043 ENSRNOT00000077161 3 1 5 94 1 87650231 87655732 GTGTTCAAGCAGCTTTGTG 58 87655790 87655808 CTGTATAGCGACCTCTGCT 59 NA Rattus norvegicus 81 Asph ENSRNOG00000007445 ENSRNOT00000047805,ENSRNOT00000079432 2 2 3 80 5 22747113 22749238 GGCTAAAGTTAAAGAACCCACC 60 22747054 22747073 CTTCCCTCTTCAGTCTTGCT 60 NA Rattus norvegicus 81 UST4r ENSRNOG00000049826 ENSRNOT00000050010 2 1 2 101 1 224340331 224340349 TATCATGGCCATGATGGCA 59 224321273 224340266 CTAGCTGTTGCCCTTAACG 59 NA Rattus norvegicus 81 Edrf1 ENSRNOG00000017728 ENSRNOT00000089957,ENSRNOT00000023877 1 2 2 80 1 205734242 205734262 CTCCTTGTGAACTGCTTAGAG 59 205734301 205736868 CAACATTGCTATTCTGACTGCT 59 NA Rattus norvegicus 81 Lypd3 ENSRNOG00000019999 ENSRNOT00000027100 2 1 1 60 1 81501869 81501888 AAACTCAACCTCACTTTGCG 59 81502203 81502221 TGTGCTCATACGCACTCTC 60 NA DesignNoJunction Rattus norvegicus 81 Gimap5 ENSRNOG00000008416 ENSRNOT00000059156 2 1 3 116 4 78382321 78383622 ACTATAGTTGAAGGGACTCTGTG 59 78383698 78383716 AGTTCCTCAAAGCCATGGT 59 NA InUTR Rattus norvegicus 81 Cnksr2 ENSRNOG00000007014 ENSRNOT00000080512,ENSRNOT00000009802 1 2 2 80 X 39825770 39825788 GTTTCACAGTCTGCTCACC 59 39825827 39830745 GGATTTAATATACATACCCAGCCC 59 NA Rattus norvegicus 81 Lca5 ENSRNOG00000009580 ENSRNOT00000044931,ENSRNOT00000090139 1 2 3 80 8 90932337 90934405 GTCTGAATGTGAATGGGAAAGAG 60 90932279 90932297 ACCAGCTTCTCTGTTCTCC 59 NA Rattus norvegicus 81 Pak6 ENSRNOG00000007925 ENSRNOT00000010471,ENSRNOT00000089434 3 2 2 80 3 110483716 110484302 CTACTGAGGTGGATATCTGGTC 59 110484343 110484361 GGGAGTCGCTGAAGTAAGG 60 NA Rattus norvegicus 81 MGC116197 ENSRNOG00000033341 ENSRNOT00000089904 3 1 2 80 9 9143109 9143127 AAGGCAGAAGGAAGATGAC 57 9142326 9143065 TTCCTACCAAATCCAAGCC 57 NA Rattus norvegicus 81 Ankrd6 ENSRNOG00000007110 ENSRNOT00000088179,ENSRNOT00000081748 1 2 3 80 5 48057257 48058373 AGAAACGTCAGATGTCATTGG 59 48057197 48057215 CCGAAAGTCTCAACTCCAG 58 NA Rattus norvegicus 81 Sat1 ENSRNOG00000003809 ENSRNOT00000086311,ENSRNOT00000068078 1 2 2 80 X 43628856 43628877 CTTTGTGATGAGTGATTACCGA 59 43629007 43629255 CGACACTTCATAGCAACCTG 59 NA Rattus norvegicus 81 Prl8a5 ENSRNOG00000016871 ENSRNOT00000080680,ENSRNOT00000022705,ENSRNOT00000022659 1 3 5 80 17 39411784 39413111 CCTTCCTTCTTTGGCACAC 59 39413154 39413173 ACATGCAGGAATTGATGCAG 59 NA Rattus norvegicus 81 Mtmr3 ENSRNOG00000007120 ENSRNOT00000078838 1 1 2 87 14 84703623 84705230 CAAACGTGGAATTGTGGGA 59 84703554 84703572 GACTGGGTTCAAAGAGCTG 59 NA Rattus norvegicus 81 Anxa4 ENSRNOG00000018159 ENSRNOT00000024436,ENSRNOT00000080502 2 2 2 80 4 118553924 118553942 GTCTGATTGAGATCCTGGC 58 118551879 118553880 TCCTTCCATATTGCTGCTG 58 NA Rattus norvegicus 81 Prl4a1 ENSRNOG00000016436 ENSRNOT00000087424 1 1 2 82 17 38716056 38718296 CAATGGTCCTCCTGGACAG 60 38715992 38716011 TTAGCTCTCATAGCAGAGGC 59 NA Rattus norvegicus 81 Cyb5r2 ENSRNOG00000019751 ENSRNOT00000026744,ENSRNOT00000079844 2 2 2 80 1 171974084 171974102 GCTAATTCGCCACATCACC 59 171972978 171974043 ATATCCTCTTCTGTCTGGTTGG 59 NA Rattus norvegicus 81 Cdadc1 ENSRNOG00000012209 ENSRNOT00000089963,ENSRNOT00000068353 2 2 2 80 15 39883053 39886439 ATAGTGAATGCTGGAGTTAACC 58 39882994 39883014 AGAACTAGAAGCCTCAGTGAG 59 NA Rattus norvegicus 81 RGD1306058 ENSRNOG00000016560 ENSRNOT00000022203 2 1 2 86 17 15852660 15854039 TTACACTTGATCAGACCTACTG 57 15854085 15854104 CTACTTGTTGCTCACTCAGG 58 NA Rattus norvegicus 81 Il1rl1 ENSRNOG00000014835 ENSRNOT00000020108 3 1 2 92 9 47176713 47178140 CCCAGAATGATGGAAAGCTC 59 47178195 47178213 CAAAGTACTCCACAGAGCC 58 NA Rattus norvegicus 81 Ank2 ENSRNOG00000011076 ENSRNOT00000089534,ENSRNOT00000037255,ENSRNOT00000015386 3 3 10 82 2 231232010 231232932 TGTCAGAGGTGACTTTGTCC 60 231231947 231231966 GACTCTACGGCCTTCTACTG 59 NA Rattus norvegicus 81 Phf2 ENSRNOG00000016816 ENSRNOT00000087692,ENSRNOT00000022669 1 2 2 80 17 16260954 16260973 AGAATGACGTGGAAAGACTG 58 16261014 16261391 GTTTGCTGTTCTTGTACTTCC 58 NA Rattus norvegicus 81 Phf2 ENSRNOG00000016816 ENSRNOT00000087692,ENSRNOT00000022669 3 2 2 80 17 16257053 16257461 TGGAAGCATTCAAAGGTTCTC 59 16257500 16257521 CACCATTGAGAATCTTAGCTCC 59 NA Rattus norvegicus 81 Hnrnpu ENSRNOG00000033790 ENSRNOT00000078061 3 1 2 80 13 96231017 96231038 TCAGAGGACGAGGAAATAATCG 60 96226167 96230976 TCACATGGACAGAACCCTG 59 NA Rattus norvegicus 81 Tnni2 ENSRNOG00000020276 ENSRNOT00000076187,ENSRNOT00000076140,ENSRNOT00000078903,ENSRNOT00000027487 2 4 7 83 1 215610468 215610576 ACCTGAAGAGTGTGATGCT 59 215610623 215610641 GGTAGTTCTGCTTCTCGGA 59 NA Rattus norvegicus 81 Arhgef2 ENSRNOG00000020027 ENSRNOT00000081531,ENSRNOT00000027182 2 2 2 80 2 188008255 188008421 GAATTCCCATGGGATTGAAGAG 59 188008461 188008480 TCCACATTGGACAACAACTC 59 NA Rattus norvegicus 81 LOC681766 ENSRNOG00000040136 ENSRNOT00000086010 1 1 2 80 6 11058410 11058507 AATACTCCAATACCCGGCAG 60 11058349 11058368 ACTATATTGCGGGAGGTCAG 59 NA Rattus norvegicus 81 Epb41l3 ENSRNOG00000016724 ENSRNOT00000022878 2 1 4 80 9 117657625 117657643 GGAGTCTCTGCTGATTCTG 57 117657685 117659903 TTGTTTAGTCTCTAGGGTCGA 58 NA Rattus norvegicus 81 Tmem9b ENSRNOG00000013591 ENSRNOT00000018309,ENSRNOT00000067388 2 2 2 81 1 174370117 174372221 TCTGTCACAATCAAGGTTACC 58 174370056 174370080 CTAAGGTAAGGTATACCATGTACAG 58 NA Rattus norvegicus 81 Plce1 ENSRNOG00000014276 ENSRNOT00000067149,ENSRNOT00000079219 3 2 2 80 1 257403591 257403686 AGGGTTTGCAAGGTTTCTG 59 257403729 257403748 TGCAGGTCTTTCTTGTTCTC 58 NA Rattus norvegicus 81 Hadhb ENSRNOG00000010800 ENSRNOT00000085613 3 1 2 119 6 27561412 27561430 GGGTTATAAGCCAAAGGCA 58 27560600 27561100 GGAGTAGCATATGTTGGTCTG 58 NA Rattus norvegicus 81 Lrfn5 ENSRNOG00000005550 ENSRNOT00000084258 3 1 2 80 6 83426442 83426463 ACATCTCAAAGAGCACATACCA 60 83431892 83432124 TGGCAGAATCTGTGTTTCCT 60 NA Rattus norvegicus 81 Slc22a5 ENSRNOG00000008432 ENSRNOT00000041253 3 1 4 84 10 39323284 39323302 AGCTGGAACTGGAGAACTG 59 39306471 39323238 AATTTCTGTTCCTCTGTCACG 59 NA Rattus norvegicus 81 Mapk14 ENSRNOG00000000513 ENSRNOT00000000617 1 1 2 80 20 5987495 5987513 AGATAATGCGTCTGACGGG 60 5987554 5988758 ACTGAATGTAGTTTCTTGCCTC 59 NA Rattus norvegicus 81 Qpct ENSRNOG00000005705 ENSRNOT00000049672 1 1 2 81 6 1657447 1668263 AGGAGAAGAACTACCACCA 57 1668308 1668326 ATCTCAGAAATGCTGGTGG 58 NA Rattus norvegicus 81 Lsr ENSRNOG00000021053 ENSRNOT00000044678 1 1 2 108 1 89391704 89391722 CTGGATGGAAACAACGAGG 59 89388045 89388630 AGAGCCAATCTTCCAAGGG 59 NA Rattus norvegicus 81 Ppm1b ENSRNOG00000030667 ENSRNOT00000083470,ENSRNOT00000040509,ENSRNOT00000048656,ENSRNOT00000079279 3 4 4 81 6 8257525 8257543 AAGGTCTCAGATGAAGCCG 60 8257585 8260436 ACTTCTGCATGATTTCTTCCAC 59 NA Rattus norvegicus 81 Hibch ENSRNOG00000028557 ENSRNOT00000040650,ENSRNOT00000029677 1 2 2 80 9 53505064 53505084 CTCAACAGACCCAAGTTACTC 58 53503299 53505022 TCGTTCCCACTTCTTTAGC 58 NA Rattus norvegicus 81 Nxpe3 ENSRNOG00000001608 ENSRNOT00000002188 1 1 2 80 11 47193059 47193079 CTTCTGCTATCTGTTTGTGGT 58 47193120 47218325 GTCTCATGGTCCAAGTACTC 58 NA Rattus norvegicus 81 Nmral1 ENSRNOG00000003794 ENSRNOT00000084850,ENSRNOT00000005109 2 2 2 82 10 11053239 11054883 CTTCACGCCAAGACAACTC 59 11054928 11054947 TAGAAACGGAACATGTTGGC 59 NA Rattus norvegicus 81 Zfp523 ENSRNOG00000000501 ENSRNOT00000000595,ENSRNOT00000084771 3 2 2 80 20 7772650 7772668 CTTCGAAGATGGTCAGCCT 60 7772712 7774763 GGGTCATAGCCCTCTTTGG 60 NA Rattus norvegicus 81 Ddx56 ENSRNOG00000004670 ENSRNOT00000089384,ENSRNOT00000006642 1 2 2 80 14 86379273 86379583 GAAAGGCTAAGAAGGTGAAGAC 59 86379214 86379232 GCTTTGCTGTGGGTTTAGG 60 NA Rattus norvegicus 81 Snx14 ENSRNOG00000011348 ENSRNOT00000056818 3 1 2 80 8 96050144 96050165 CATATGAGCATGTTCTTTCCCT 59 96049906 96050105 AGAGTTGCCTGAAATACTCGT 60 NA Rattus norvegicus 81 Lyrm7 ENSRNOG00000045961 ENSRNOT00000075311 2 1 1 60 10 40193201 40193219 CAAGGAATCCACACTGACC 58 40184576 40184597 CTGTAAGAAGATCTTTCCTGGG 58 NA DesignNoJunction Rattus norvegicus 81 Nr1i3 ENSRNOG00000003260 ENSRNOT00000079355,ENSRNOT00000049873 1 2 2 80 13 89587354 89588670 GAAAGACATGATACTGTCAGCA 59 89588711 89588729 AAAGATGCTTTCTGTGCCC 59 NA Rattus norvegicus 81 Ermn ENSRNOG00000021472 ENSRNOT00000082604 2 1 2 81 3 44081229 44081247 AGAAGGGAGATATCGCCAG 58 44068096 44081186 TCCAAATGAGAGTCTTTCCTG 58 NA Rattus norvegicus 81 Plekhh2 ENSRNOG00000005124 ENSRNOT00000090724 1 1 2 80 6 7882909 7882929 GCATTCGCATTTACTTGACAG 59 7882971 7886520 ACGGTGTTATAGGTTTGGC 58 NA Rattus norvegicus 81 Plekhh2 ENSRNOG00000005124 ENSRNOT00000090724 2 1 2 80 6 7882913 7882933 TCGCATTTACTTGACAGTAGC 59 7882972 7886524 GATGACGGTGTTATAGGTTTGG 59 NA Rattus norvegicus 81 LOC316124 ENSRNOG00000047549 ENSRNOT00000073048 3 1 2 82 9 10164921 10164941 CTGTGCTTTGGTATACAACCA 59 10164770 10164880 CTGTGGTCCATGTGATATTGTC 59 NA Rattus norvegicus 81 Ces2c ENSRNOG00000036571 ENSRNOT00000079722,ENSRNOT00000082254,ENSRNOT00000073241,ENSRNOT00000080995,ENSRNOT00000045656,ENSRNOT00000074303 1 6 6 83 1 282646145 282646166 GGCACTGCTCAAATAATAAAGG 58 282646210 282646440 AGGAAGCATCATTTGTGCT 58 NA Rattus norvegicus 81 AC127605.1 ENSRNOG00000033156 ENSRNOT00000043970 2 1 2 70 X 53234811 53234829 AGTACCTTGAGGAGCAGGA 60 53234621 53234639 TTCTCTGAAAGCCAGCCTC 60 NA DesignNoJunction Rattus norvegicus 81 Cab39l ENSRNOG00000011603 ENSRNOT00000084505 1 1 2 80 15 39838931 39838951 GAAACTCATGATGAACCTGCT 59 39838992 39869934 CCCAGATGAGCCTTAAAGAC 58 NA Rattus norvegicus 81 AABR07035375.2 ENSRNOG00000048886 ENSRNOT00000074158 1 1 1 60 12 11734961 11734979 TGGTTGGGTTCGACTACAG 59 11735005 11735024 CGCTTTCCCTTTCTTATCGG 59 NA DesignNoJunction Rattus norvegicus 81 Rasgrp3 ENSRNOG00000032703 ENSRNOT00000051239 3 1 2 84 6 21077693 21091615 GAAGTTGGTTGAGCTCTGG 59 21077311 21077330 GTCTTTGCACTGTTTGTGAC 58 NA Rattus norvegicus 81 Katnal1 ENSRNOG00000047618 ENSRNOT00000077328,ENSRNOT00000078798,ENSRNOT00000072801 2 3 3 89 12 7504846 7504864 TTCCCTGTGTCTTGTCGAG 59 7504917 7519473 GATTTGAGGTGGTGCTCTG 59 NA Rattus norvegicus 81 Myo9b ENSRNOG00000016256 ENSRNOT00000045099,ENSRNOT00000081321 2 2 5 81 16 19727744 19727762 AGTCCTGTCACTCGAAGTC 59 19727807 19730706 TATGCAAATCGCGGTACAG 58 NA Rattus norvegicus 81 Prl3a1 ENSRNOG00000017103 ENSRNOT00000023063,ENSRNOT00000077923 3 2 2 80 17 42726722 42736585 TCTGAGGAGTTTGGGTATGC 60 42726661 42726680 AGTGAAATGGTGTGACAGGT 60 NA Rattus norvegicus 81 LOC690096 ENSRNOG00000009240 ENSRNOT00000012255 2 1 1 89 14 107349705 107349723 CGAAAGAACAAGTACCGCC 59 107349876 107349894 GCTTTGAAGGATGGCACTG 60 NA DesignNoJunction Rattus norvegicus 81 Slu7 ENSRNOG00000003822 ENSRNOT00000088322 3 1 2 80 10 29034067 29034087 AAGATGACCAGAGGACTGG 58 29034132 29034150 TTCATCAACTTCTGCAGGG 58 NA Rattus norvegicus 81 Mettl8 ENSRNOG00000009382 ENSRNOT00000076202,ENSRNOT00000058524 2 2 4 80 3 57584383 57584402 AAGAGGAAGAAGACGAAGCT 59 57572313 57584343 CAAACTTAACTTGCTCTTCTGG 58 NA Rattus norvegicus 81 Zbtb10 ENSRNOG00000061862 ENSRNOT00000087598,ENSRNOT00000081553 3 2 2 80 2 94709551 94720814 CTGGTGGGAAATGAGTCAG 58 94709489 94709509 GCAATAGGAGTTCTCATTTGG 57 NA Rattus norvegicus 81 Dpf2 ENSRNOG00000020892 ENSRNOT00000084396 3 1 2 127 1 221261127 221261146 AGAAGATACTCCAAAGCGTC 58 221260411 221260906 TGAAACTATTGTCACAGGCA 58 NA Rattus norvegicus 81 Rnf216 ENSRNOG00000001101 ENSRNOT00000001458 3 1 2 80 12 13524348 13526532 CCTGACAGAAACACATAAACCTC 60 13526570 13526590 AATCTGTTCAGATCTTGCCAC 59 NA Rattus norvegicus 81 Mipep ENSRNOG00000013876 ENSRNOT00000018845 2 1 2 82 15 41104123 41104145 CAAACCTAGTAGGCTATCTACC 57 41109164 41109182 AAGGAACTGCATGACAGTC 58 NA Rattus norvegicus 81 Stx12 ENSRNOG00000011804 ENSRNOT00000085573,ENSRNOT00000017227,ENSRNOT00000078048 1 3 3 80 5 151051031 151052226 CATTTGACAGCCATGAGGAG 59 151050970 151050990 TAAGTTCCAGGTCTTGCTCAG 60 NA Rattus norvegicus 81 Mfn1 ENSRNOG00000011057 ENSRNOT00000065144 2 1 2 82 2 118932323 118932343 ATAGCAACCGAGGATCTGG 59 118932388 118932407 TTCATATGCCTCCGAGACAG 59 NA Rattus norvegicus 81 Snx5 ENSRNOG00000006077 ENSRNOT00000074606,ENSRNOT00000008934 3 2 2 93 3 138387919 138388651 GTTCACACCAAGACCACAC 59 138387844 138387862 TAAGAGTGTCATGCAGCCA 59 NA Rattus norvegicus 81 P2rx3 ENSRNOG00000008552 ENSRNOT00000033427,ENSRNOT00000088815 3 2 3 109 3 72432627 72432844 TTCTGTCCAGAGAATGAAGAG 57 72431991 72432010 AGAACAGAGCTGTAGTTCAC 57 NA Rattus norvegicus 81 Ntng2 ENSRNOG00000013694 ENSRNOT00000045919 1 1 2 82 3 7746888 7752843 CTTTGGCACTGTGACTATCC 59 7746825 7746843 GAGGAGATCTGGGCTTGAG 59 NA Rattus norvegicus 81 Khsrp ENSRNOG00000047628 ENSRNOT00000072033 2 1 2 84 9 10021813 10021831 TGCTTACTACGGACAGACC 59 10021879 10022885 ATTTGCTTCAGTTGCCTGC 60 NA Rattus norvegicus 81 Tmem144 ENSRNOG00000010081 ENSRNOT00000013499,ENSRNOT00000078610 2 2 2 80 2 178594127 178597006 CAGCCAGTATGATTTAGACTACG 59 178594069 178594088 CTGTAGGCCACAAAGTAGAC 58 NA Rattus norvegicus 81 Ece1 ENSRNOG00000014241 ENSRNOT00000067616,ENSRNOT00000077742 1 2 2 102 5 156288488 156290095 CAATGTGATCCAGGTGGAC 58 156291407 156291427 GTAGTTCAGATAGCCAGTCAG 58 NA Rattus norvegicus 81 Pcdhac1 ENSRNOG00000020119 ENSRNOT00000027383,ENSRNOT00000075810,ENSRNOT00000027372,ENSRNOT00000027393,ENSRNOT00000084132,ENSRNOT00000079794,ENSRNOT00000079008,ENSRNOT00000077824,ENSRNOT00000027343,ENSRNOT00000027340 1 10 10 73 18 30188422 30188440 GTATCCAGTGCAACACCAG 59 30213225 30213243 CTGTTGCTGTTGACACCAG 59 NA DesignNoJunction Rattus norvegicus 81 Dixdc1 ENSRNOG00000010260 ENSRNOT00000083102 3 1 2 85 8 55110318 55110336 TCTAGAACGGGAGCTAGAG 57 55109465 55110272 GACTGTTGTAATTTGTCACCTC 58 NA Rattus norvegicus 81 Odf2 ENSRNOG00000014584 ENSRNOT00000020407,ENSRNOT00000041921 2 2 4 80 3 8487989 8494331 CTCGTGATGATGTGGATCGA 60 8494374 8494392 GGTTGGTGCTTTCAGACTG 59 NA Rattus norvegicus 81 Ssr1 ENSRNOG00000014165 ENSRNOT00000077994 1 1 4 80 17 27506920 27507205 TCAGATCATGCAGAGTAGAAGAG 60 27510691 27510710 GATCCCACCGATCTCTTCTG 60 NA Rattus norvegicus 81 Ssr1 ENSRNOG00000014165 ENSRNOT00000084090 2 1 4 98 17 27506902 27506923 TCCTCAGGAAACTTTGAATCAG 58 27523799 27523820 GCATAGCTTGTATCTGAGACC 58 NA Rattus norvegicus 81 Ddx51 ENSRNOG00000037480 ENSRNOT00000068621 1 1 2 86 12 52068970 52068988 AATTCTCCTCCCGCTATGG 59 52068450 52068920 CTGTTCTCCCTACCAGCTG 60 NA Rattus norvegicus 81 Rcbtb2 ENSRNOG00000015054 ENSRNOT00000020836,ENSRNOT00000091000 1 2 2 80 15 55056798 55056818 TCAAACAAGCAAGTCATCGAG 59 55056860 55058368 CCAGGCAAATACCTCTCCA 59 NA Rattus norvegicus 81 Thoc1 ENSRNOG00000032739 ENSRNOT00000045976 1 1 1 60 X 48196961 48196979 TTGAGCAAATGGATGGGAG 58 48210302 48210320 GGACATCTGGTTCCTTTCC 58 NA DesignNoJunction Rattus norvegicus 81 Rnf44 ENSRNOG00000017641 ENSRNOT00000089885,ENSRNOT00000060822 1 2 2 80 17 10469489 10469586 GGAGAACTATGAGGCTCTCC 59 10469627 10469647 TCTATGTCTGCTTTGGTGAGG 60 NA Rattus norvegicus 81 Cd93 ENSRNOG00000024799 ENSRNOT00000076493 1 1 2 82 3 142781440 142781706 ATCAGTACAGCCCAACACC 60 142781376 142781394 ACTCTGAAGGTAGTGGCAG 59 NA Rattus norvegicus 81 Cd93 ENSRNOG00000024799 ENSRNOT00000076493 3 1 2 83 3 142781440 142781706 ATCAGTACAGCCCAACACC 60 142781375 142781394 AACTCTGAAGGTAGTGGCAG 60 NA Rattus norvegicus 81 Atp6v0a1 ENSRNOG00000036814 ENSRNOT00000055238 3 1 2 108 10 88952678 88952696 CAACTTTGGTGGGATCAGG 59 88952766 88959739 AAAGTCAAACTCTTCTGCGTC 59 NA Rattus norvegicus 81 Rhpn1 ENSRNOG00000007597 ENSRNOT00000075958,ENSRNOT00000010065 2 2 4 80 7 116744874 116744980 ACTCTTTCACTGGTACGACTC 60 116745021 116745040 AACAGTACACTGCCCTTCTC 60 NA Rattus norvegicus 81 Sfrp4 ENSRNOG00000054957 ENSRNOT00000079216 3 1 2 100 17 47389994 47390012 ATCATGTGTTATGAGCGGC 58 47299178 47386892 TGATGGACATCTGTGGACC 59 NA Rattus norvegicus 81 Slc2a5 ENSRNOG00000017693 ENSRNOT00000089314 2 1 2 91 5 167173505 167174099 AGAAGAACAAGCCATGTCAC 59 167174151 167174171 ACAGAATACTGTCGTTGACAG 58 NA Rattus norvegicus 81 Pus10 ENSRNOG00000054151 ENSRNOT00000083763 1 1 2 80 14 108467896 108467916 ACCTACAGTGCCTTGATATGG 60 108467953 108473160 CTTCAAGTCCTTTAAGTCATCCAG 60 NA Rattus norvegicus 81 Hydin ENSRNOG00000017178 ENSRNOT00000059147,ENSRNOT00000080694 3 2 4 80 19 41247410 41255021 GAAACTGACCATTCGAGGC 59 41247348 41247368 TAGGAAACATTCCCAAAGTGC 59 NA Rattus norvegicus 81 Prpf8 ENSRNOG00000003495 ENSRNOT00000081813,ENSRNOT00000005016 2 2 2 80 10 63657874 63658057 CAACTTTATGGGTGTTCGAC 57 63658100 63658118 ACCTCATGGTAGAACTCCT 57 NA Rattus norvegicus 81 Pde4d ENSRNOG00000042536 ENSRNOT00000067546 2 1 3 90 2 41442457 41449043 GGGCTACATAAAGTTCAAGAGG 59 41449094 41449112 TATGTACTCCGACACCTGG 58 NA Rattus norvegicus 81 Spice1 ENSRNOG00000039024 ENSRNOT00000064385 2 1 2 84 11 61253476 61253498 GATTAGCAATTCCTGTTCTCCAC 60 61252350 61253434 CTCAGTCTGCTTTGTTCTTGG 60 NA Rattus norvegicus 81 Slc17a1 ENSRNOG00000042692 ENSRNOT00000083829 1 1 2 85 17 43500370 43500388 AGCTTGAAATCCAAAGGCA 58 43499608 43500321 TCTCCAATCCTCAATGCAC 58 NA Rattus norvegicus 81 LOC100360638 ENSRNOG00000018936 ENSRNOT00000037975 3 1 2 62 1 84893850 84893868 ATGTTGGAGACCTACAGCC 59 84893802 84893820 ACACATCACCCATTCATGG 58 NA DesignNoJunction Rattus norvegicus 81 Icos ENSRNOG00000046196 ENSRNOT00000071226,ENSRNOT00000091060 1 2 2 81 9 67781918 67781936 TGTGCACGACCCTAATAGC 60 67781980 67784178 TGAGGTCATACCTGCAAGTC 60 NA Rattus norvegicus 81 Prepl ENSRNOG00000007326 ENSRNOT00000082353 1 1 3 80 6 8344412 8344431 GTGTCTGCAGAATAAACCCA 58 8336093 8344369 GGCAGAAGATCCTTACGTG 58 NA Rattus norvegicus 81 Slco1b2 ENSRNOG00000030538 ENSRNOT00000013514 3 1 2 80 4 175851525 175855534 TCCATGCACCTAGACAGTG 59 175855577 175855596 ATTCACAATGAAGCTGAGCC 59 NA Rattus norvegicus 81 Larp7 ENSRNOG00000048989 ENSRNOT00000074644 1 1 2 95 2 231873942 231873960 TGGAGACAGAGTCCAAAGC 59 231873199 231873218 TCACTCCAGTCACGAACTG 59 NA Rattus norvegicus 81 Relb ENSRNOG00000033235 ENSRNOT00000067049 3 1 5 81 1 80530862 80530914 GAGATAGAGGGTCAGCAGAG 59 80530800 80530818 TCCCATACGTTGTCCTCTG 59 NA Rattus norvegicus 81 Elmo1 ENSRNOG00000059705 ENSRNOT00000077910 1 1 2 80 17 46682518 46682539 CAAGAAATCCAGACTTACACCA 58 46680230 46682479 TACATCAACCTGTCTCCTCTC 59 NA Rattus norvegicus 81 Dzip1l ENSRNOG00000014746 ENSRNOT00000090299,ENSRNOT00000019902 2 2 2 80 8 107910962 107910981 GATTCTGAGACCTCAGAGGA 58 107911024 107913473 CTGTACCAGTGTTGCTGAG 58 NA Rattus norvegicus 81 Gsap ENSRNOG00000028801 ENSRNOT00000083964 2 1 2 80 4 10466140 10466158 AAGACCTTCACCGTAGCTC 59 10460324 10466098 CACAAAGTAGCCAAGGTTGAG 60 NA Rattus norvegicus 81 Gria4 ENSRNOG00000006957 ENSRNOT00000081171 3 1 3 82 8 1586749 1586768 GATGAAAGTGGGAGGAAACC 59 1554886 1586709 GGTTTACAGGAGTTCTTAATGAGG 59 NA Rattus norvegicus 81 Nfya ENSRNOG00000012702 ENSRNOT00000091532 3 1 2 81 9 14568127 14568841 CTCCAGCAAGTTACAGTCC 58 14568886 14568904 CTGTCTGAACGATCTGTGC 59 NA Rattus norvegicus 81 AABR07015956.1 ENSRNOG00000058316 ENSRNOT00000079338 2 1 1 69 14 87701354 87701372 GAGCACTTAACCGAGAGTG 58 87701051 87701070 GTCCTGAAGAGACTGCTCTG 60 NA DesignNoJunction Rattus norvegicus 81 RGD1562234 ENSRNOG00000043325 ENSRNOT00000067469 1 1 1 82 2 191294264 191294283 GACAAATTGGATGTCCAGGA 58 191291774 191291793 ATACCACTTGCATTCAATGC 57 NA DesignNoJunction Rattus norvegicus 81 Cd80 ENSRNOG00000001527 ENSRNOT00000002089 2 1 2 80 11 64828799 64830868 CACTGTCAAATTCCGACGC 60 64828737 64828755 ACAGGCCCTATGTAGAGGT 59 NA Rattus norvegicus 81 LOC102550416 ENSRNOG00000042517 ENSRNOT00000085204,ENSRNOT00000084784 2 2 5 261 2 192604979 192604997 TGTCTTACCAACAGCAGCA 60 192616086 192616104 GGAGGAGTTTGGACAGGAG 59 NA DesignNoJunction Rattus norvegicus 81 Mga ENSRNOG00000006378 ENSRNOT00000067865,ENSRNOT00000008528,ENSRNOT00000064345 2 3 4 80 3 111718748 111720134 CTAGGAATGAAGGTGGAAATTCAG 60 111720168 111720191 CCAAGTACTCATCTAGCTTATCAC 59 NA Rattus norvegicus 81 Wnk1 ENSRNOG00000009956 ENSRNOT00000013355 1 1 4 80 4 152482009 152482029 CAACCAGCAGTGAGTTTATCG 60 152481256 152481969 GACTCCCTGTGTACTACTCTC 59 NA Rattus norvegicus 81 Dct ENSRNOG00000008671 ENSRNOT00000076707,ENSRNOT00000011571 2 2 2 80 15 103244245 103244263 CGAAATCAGGATGACCGTG 59 103235739 103244204 ATAACCAGCAAAGTTTCCTGTG 60 NA Rattus norvegicus 81 Ppp4r2 ENSRNOG00000024647 ENSRNOT00000029115,ENSRNOT00000084158 3 2 2 81 4 133318862 133318880 AAATGGTTTGCCTGAGAGC 59 133318924 133319616 TGCTGAAGAATCACTGTGTC 58 NA Rattus norvegicus 81 N6amt2 ENSRNOG00000009849 ENSRNOT00000075861,ENSRNOT00000064702,ENSRNOT00000091562 2 3 4 82 15 37820521 37825065 ATAGAGGAGAACTGGCAGC 59 37820457 37820475 ACAGCATTGATGGCTTCCT 60 NA Rattus norvegicus 81 Bin3 ENSRNOG00000018023 ENSRNOT00000077259 2 1 3 169 15 51798779 51799357 CAGGATTCCATTTAAGATCGGG 59 51805159 51809692 CAGATTTGGACATGGCCAG 59 NA Rattus norvegicus 81 Lgals9 ENSRNOG00000012681 ENSRNOT00000017042 1 1 2 80 10 64751726 64753219 TTCATCAACTTCCAGAACTCCA 60 64753260 64753278 GAACTGGACTGGCTGAGAG 60 NA Rattus norvegicus 81 LOC100910877 ENSRNOG00000032560 ENSRNOT00000087257,ENSRNOT00000051244 3 2 2 80 12 11711189 11711210 CATGAATATGAAACTCGCTCTC 58 11704123 11711150 TTCAGAGGTATCTGTGTTTCC 58 NA Rattus norvegicus 81 Tia1 ENSRNOG00000016813 ENSRNOT00000023103 1 1 2 80 4 118217829 118217847 AGAAGCTCTCATCCTCCAG 58 118217891 118220904 TCATTTCCTGCCGTATCCA 59 NA Rattus norvegicus 81 Grin2d ENSRNOG00000021063 ENSRNOT00000028615,ENSRNOT00000084869 3 2 2 81 1 101843999 101844018 CTCTACCTGGTTACCAACGG 60 101843371 101843956 GCTGATAGAACACCTCACCA 60 NA Rattus norvegicus 81 Col6a1 ENSRNOG00000001249 ENSRNOT00000001679 2 1 2 80 20 12673833 12673977 GACATTCAGGTAGTTTCTGTGG 59 12674018 12674036 GCAGGAAATGACGTTGAGC 60 NA Rattus norvegicus 81 Sphkap ENSRNOG00000016388 ENSRNOT00000022281 3 1 2 83 9 89072891 89072969 GAGCATCCCTCATTTGATAAGG 59 89072829 89072847 TGCATTGCTAGAGGGATGG 60 NA Rattus norvegicus 81 AABR07072207.1 ENSRNOG00000011155 ENSRNOT00000014838 1 1 1 143 10 105564958 105564976 AAAGCTGCTGTTGCTAAGG 59 105565085 105565103 CTTCTGACCTTTAGCAGGG 58 NA DesignNoJunction Rattus norvegicus 81 RGD621098 ENSRNOG00000014668 ENSRNOT00000020003 3 1 2 175 19 37204575 37204594 AACCGAAATATGCACAACCT 58 37206291 37207053 GGTTGTTCTGCATGACCTC 59 NA Rattus norvegicus 81 Tgfbrap1 ENSRNOG00000024562 ENSRNOT00000037094,ENSRNOT00000079239 3 2 2 80 9 49861920 49864249 CCTCTGCAGTTCAGTTGTG 59 49861858 49861880 CGATGTATTCATACAGGTCTGAG 59 NA Rattus norvegicus 81 Plekho1 ENSRNOG00000021170 ENSRNOT00000028747,ENSRNOT00000079621 1 2 2 95 2 198114370 198114388 CTATCTTGCCCACCCTACC 59 198112898 198114311 GTAGAGGTGGAAGCCACAG 60 NA Rattus norvegicus 81 Ivns1abp ENSRNOG00000002618 ENSRNOT00000083301,ENSRNOT00000066419 1 2 8 107 13 68709343 68709780 TTCGACTTCAGGTCTGTGG 59 68709851 68709869 CTCCATGAGGGTCACTGTC 60 NA Rattus norvegicus 81 Scyl2 ENSRNOG00000024955 ENSRNOT00000082016 3 1 2 147 7 30315058 30315079 TGTAAATCCTGACATGGTACCT 59 30312455 30314951 AATCATGTTGCTAGCCTGGA 60 NA Rattus norvegicus 81 Acot7 ENSRNOG00000010580 ENSRNOT00000000079,ENSRNOT00000014213 3 2 2 80 5 169395408 169400256 AACATCCTCACAGGTACCA 58 169400297 169400318 CTTGTCCACATTCTTCAATGAC 58 NA Rattus norvegicus 81 Sgk1 ENSRNOG00000011815 ENSRNOT00000083452,ENSRNOT00000040736,ENSRNOT00000061157,ENSRNOT00000016121 1 4 4 87 1 24190586 24193406 GCTTTCATGAAACAGAGAAGGA 59 24190135 24190538 GAACTTCAGGGTGTTTGCA 59 NA Rattus norvegicus 81 Sgk1 ENSRNOG00000011815 ENSRNOT00000083452,ENSRNOT00000040736 3 2 4 88 1 24190587 24193407 AGCTTTCATGAAACAGAGAAGG 59 24190135 24190538 GAACTTCAGGGTGTTTGCA 59 NA Rattus norvegicus 81 Ccdc85a ENSRNOG00000003374 ENSRNOT00000056813,ENSRNOT00000081981 3 2 2 89 14 112940143 112945954 GAGGGCTTAAGGATATTAACCAG 59 112940076 112940094 CTTTCTGCCGATCATCGTC 59 NA Rattus norvegicus 81 Adgrv1 ENSRNOG00000016306 ENSRNOT00000039652 3 1 4 83 2 8939052 8991006 TCAATAGTCTGCAGGGACTC 59 8938988 8939007 TATAGCTGGCCTTCATAGGG 59 NA Rattus norvegicus 81 Prelp ENSRNOG00000003120 ENSRNOT00000076610,ENSRNOT00000004241,ENSRNOT00000079116 3 3 3 84 13 50754129 50754147 ACAAGATCAGCAATGTGCC 59 50752005 50754084 GTCCCATTGATCTTCTCTATGC 59 NA Rattus norvegicus 81 Prelp ENSRNOG00000003120 ENSRNOT00000076610,ENSRNOT00000004241,ENSRNOT00000079116 1 3 3 83 13 50754129 50754147 ACAAGATCAGCAATGTGCC 59 50752006 50754085 TCCCATTGATCTTCTCTATGCT 59 NA Rattus norvegicus 81 Parp4 ENSRNOG00000051196 ENSRNOT00000076667 2 1 4 80 15 36845475 36847861 TCAGCAACTCACTCAGTACG 60 36847904 36847922 CGTCACAGATGACCAGGAG 60 NA Rattus norvegicus 81 Crem ENSRNOG00000014900 ENSRNOT00000068545,ENSRNOT00000092187 3 2 7 82 17 57067669 57079367 TGTTGTTCAAGATGAGGAGAC 58 57082587 57082605 CTCGGATCTGGTAAGTTGG 57 NA Rattus norvegicus 81 Ano4 ENSRNOG00000006841 ENSRNOT00000009084 2 1 2 174 7 29556609 29563282 GATCACTGCCAAGTCAGGT 60 29537538 29546218 GGCCGTATTTCTTCCTCCT 59 NA Rattus norvegicus 81 Hras ENSRNOG00000016611 ENSRNOT00000022363,ENSRNOT00000079464 2 2 2 80 1 214180366 214180580 ATCCCACTATAGAGGACTCC 57 214180305 214180324 CTGCTGTGTCTAAGATGTCC 58 NA Rattus norvegicus 81 Cd44 ENSRNOG00000006094 ENSRNOT00000009000 3 1 3 80 3 92717920 92721563 AGAAAGCAAGGATACAGACTC 58 92717860 92717878 AAGTCTTCCACCAAATGGG 58 NA Rattus norvegicus 81 Kit ENSRNOG00000002227 ENSRNOT00000090654 3 1 2 97 14 35085618 35087240 ATTTAAAGAGCAAATCCAGCCC 60 35085542 35085563 CAAGAACCATCACAATGATCCC 60 NA Rattus norvegicus 81 Mphosph8 ENSRNOG00000051238 ENSRNOT00000028145 1 1 2 80 15 36934592 36937352 GATCAAGAGGATTCTACTGGG 57 36937393 36937412 GATAAGGAGTCTGAGGAGGT 58 NA Rattus norvegicus 81 Eif2s3 ENSRNOG00000060793 ENSRNOT00000092019 2 1 2 80 X 63283487 63284451 AGCTCTTCTATTGATAGCTGGT 59 63283428 63283448 TTCATGATTTCTATGGCAGCC 59 NA Rattus norvegicus 81 Bard1 ENSRNOG00000014960 ENSRNOT00000020414 3 1 2 80 9 78341894 78341913 TCTTCTGGTATTCCAGCCAG 59 78332806 78341854 GCAGGCTTCATGCTTTATAGAG 60 NA Rattus norvegicus 81 Abcc8 ENSRNOG00000021130 ENSRNOT00000028696 3 1 2 81 1 102114895 102114914 CCATCTCCAACTCCCTACAC 60 102114505 102114852 TAGTTGGAGACCATCAAGGC 60 NA Rattus norvegicus 81 Rngtt ENSRNOG00000007867 ENSRNOT00000010614 2 1 2 80 5 48561453 48561471 GCTTACAACAAGATCCCGC 59 48561510 48574679 CTTTAGAGGTAAGAATCTTCCTGC 59 NA Rattus norvegicus 81 Plekha7 ENSRNOG00000024602 ENSRNOT00000086681 3 1 2 80 1 185516524 185518478 TCTTCCAGGAGAAGTCACAG 59 185518519 185518539 TCTCTTTATTCACACTCAGGC 58 NA Rattus norvegicus 81 Ttc29 ENSRNOG00000012342 ENSRNOT00000089569,ENSRNOT00000016558 2 2 2 80 19 33334780 33340696 AGCCAGAGAAGGAAATGAC 57 33334718 33334737 TATTCTCCAGAAGCCAAGTG 57 NA Rattus norvegicus 81 Zfp428 ENSRNOG00000019802 ENSRNOT00000088829,ENSRNOT00000026814 1 2 2 64 1 81376270 81376289 AGATGATGAAGACCTTTCCC 57 81381492 81381510 CCTCTTCCTCTTCCTCCTC 58 NA DesignNoJunction Rattus norvegicus 81 Tmem176b ENSRNOG00000008465 ENSRNOT00000078473,ENSRNOT00000011327 2 2 2 80 4 78451462 78451480 GATTGTTGTGTCTGTGGCT 58 78451044 78451420 TCTTCATCATTCAAGACCTGG 58 NA Rattus norvegicus 81 Rpl9 ENSRNOG00000026716 ENSRNOT00000038927,ENSRNOT00000076245 1 2 6 85 14 44526913 44527306 TTCAAATTCAGCGGCTCTG 59 44527353 44527373 CAGAAACATAGATGCCATCCA 58 NA Rattus norvegicus 81 Synj2 ENSRNOG00000017114 ENSRNOT00000068476 2 1 3 80 1 46920158 46923575 GTACAAAGCTGGCTTAATGGT 59 46923616 46923635 AAGATGGAATATTGCCCGTG 58 NA Rattus norvegicus 81 Abca12 ENSRNOG00000015248 ENSRNOT00000057672 1 1 2 80 9 78547960 78547980 GGATGAAATTGACTAACGACC 57 78546154 78547919 GATCATACCACACCTTAGCA 57 NA Rattus norvegicus 81 LOC691920 ENSRNOG00000010050 ENSRNOT00000079109 3 1 2 82 3 112486248 112486266 AGATGGACAACTTGCAGCT 60 112486312 112487625 CAGTTCATGACAGCACTGC 60 NA Rattus norvegicus 81 Igtp ENSRNOG00000027008 ENSRNOT00000077764 1 1 2 62 10 43633038 43633059 GATTTAGTCATGAAGTTGCCAC 58 43637231 43637249 CGCCATGTTTATGAAAGGG 57 NA DesignNoJunction Rattus norvegicus 81 Gli3 ENSRNOG00000014395 ENSRNOT00000081290 2 1 2 96 17 52364460 52364478 AGATGAAAGCAAGCAGGAG 58 52308168 52364397 ATGATGAACAAGCTGATCCT 57 NA Rattus norvegicus 81 Fap ENSRNOG00000005679 ENSRNOT00000008148 3 1 2 80 3 48469397 48469415 GCACTTTCAGAACTCAGCA 58 48467872 48469353 TGGTCAGAGTACCACATCG 59 NA Rattus norvegicus 81 Add2 ENSRNOG00000015903 ENSRNOT00000021491 1 1 2 100 4 117875121 117875140 ACCTGTAAAGTCCACACCTG 60 117875203 117881973 TCTTGGCATCCTCTGAAGC 60 NA Rattus norvegicus 81 LOC685411 ENSRNOG00000049890 ENSRNOT00000041115 1 1 2 80 19 28291655 28291690 GCAAGAGACATGGAAGAAGAC 59 28291595 28291614 CTGTTGAGGATTGTGGTCAG 59 NA Rattus norvegicus 81 Tmem80 ENSRNOG00000018061 ENSRNOT00000078754 2 1 2 83 1 214323080 214324996 CTCAGCTATACCTAGGCACAC 60 214325041 214325059 CACTGACTGCTGTGAATGC 60 NA Rattus norvegicus 81 Lrch3 ENSRNOG00000001774 ENSRNOT00000063883 3 1 3 102 11 71035930 71038449 CACAATCAGCACAAAGTATCAC 58 71034122 71034142 CACTATCATCAGTGTGCTGAG 59 NA Rattus norvegicus 81 Lrig1 ENSRNOG00000012952 ENSRNOT00000017384 3 1 2 199 4 126618810 126619418 GCATATTGAAAGCAATGGTGTG 59 126617815 126617833 ACCTACAGTCACTGCACAC 60 NA Rattus norvegicus 81 Akap17a ENSRNOG00000028211 ENSRNOT00000078999,ENSRNOT00000037829 3 2 2 90 12 18529511 18529858 GGCATCAAGGTGACATCAG 59 18529439 18529459 CAAGTTCCTGTAGTTTCTGCC 59 NA Rattus norvegicus 81 Lmo1 ENSRNOG00000014629 ENSRNOT00000019690,ENSRNOT00000086944 1 2 2 64 1 173730181 173730199 TATCACCTTGACTGCTTCG 57 173728570 173728588 AAGAATTTGTCTCCCACGC 59 NA DesignNoJunction Rattus norvegicus 81 Pkn3 ENSRNOG00000025892 ENSRNOT00000077797 1 1 3 81 3 8655424 8655528 AGATGTTAGTGGGTGAGTGTC 60 8655570 8655589 CATGGGACATCAGCATTGAC 59 NA Rattus norvegicus 81 Agpat4 ENSRNOG00000017731 ENSRNOT00000024213,ENSRNOT00000082958 1 2 2 80 1 48724193 48726150 GACTGCTACGTTAGGAGGA 58 48724131 48724149 GTAGAGCTTGTGTAGCCAG 58 NA Rattus norvegicus 81 Dync1i2 ENSRNOG00000009781 ENSRNOT00000013400 3 1 3 81 3 57832707 57832725 CATCCTCCAAGTCGGTGAG 60 57832770 57840099 GGTCCTCGTCTAGATCCCA 60 NA Rattus norvegicus 81 Vsig1 ENSRNOG00000054219 ENSRNOT00000091441 2 1 2 91 X 112284401 112290823 ACCTCTCAGATCTACTACTCTG 58 112290873 112290893 GCATTACCAGGATTAGTAGCC 58 NA Rattus norvegicus 81 Ptcd3 ENSRNOG00000009484 ENSRNOT00000078123 3 1 3 122 4 99799984 99800005 GAAATGGTTCCTCAGATTTGGA 59 99798443 99799404 AGCTGAGAGGATCTCTGGT 59 NA Rattus norvegicus 81 LOC680907 ENSRNOG00000036647 ENSRNOT00000054880 2 1 2 80 1 212715849 212715867 AGCAATGTGACCTTCTGAC 58 212716231 212721906 AACCTGATATAGCTGTTTCCAC 58 NA Rattus norvegicus 81 Nid2 ENSRNOG00000000341 ENSRNOT00000082196 3 1 2 98 15 4895578 4895596 CTTCTACCACACGGACTGG 60 4894710 4894731 TAGAGGTGAGACTGTTCAGGA 60 NA Rattus norvegicus 81 Trim36 ENSRNOG00000016612 ENSRNOT00000022294,ENSRNOT00000080812 1 2 2 80 18 40096771 40100831 AAGAAACAGAGTGCAATGGA 58 40096710 40096731 TGTCTTCCAGGATTTCAAAGAG 58 NA Rattus norvegicus 81 Ghrhr ENSRNOG00000011808 ENSRNOT00000084855 1 1 4 80 4 85601243 85601261 CATGACCCTGAACTTCTGC 59 85601305 85601454 TACAGGGACCTTCACTCTC 58 NA Rattus norvegicus 81 Slc1a5 ENSRNOG00000015948 ENSRNOT00000021455 1 1 2 94 1 78714765 78714784 CAATCTGGTGTCTGCTTCTG 59 78715821 78717460 TCATCTCACAGTGAGGCTG 59 NA Rattus norvegicus 81 Atxn2l ENSRNOG00000018686 ENSRNOT00000068529,ENSRNOT00000080605 2 2 2 80 1 197913603 197913759 TATCAATGGAGGTCCTTCCC 59 197913542 197913562 TTGTTGGGTGAAGATAAGGTC 58 NA Rattus norvegicus 81 Hspbap1 ENSRNOG00000002241 ENSRNOT00000081875,ENSRNOT00000003060 2 2 2 80 11 68150279 68150298 CCCTGATTTAAAGCGTTTCC 58 68148922 68150236 ACAAACAGAACCTGTCCTG 58 NA Rattus norvegicus 81 Heph ENSRNOG00000012294 ENSRNOT00000017312,ENSRNOT00000092103 2 2 2 80 X 65566319 65568352 CTCTGAACAATGACACAGTGG 59 65568390 65568412 AGACAGTCTTCTTGTAAGTACCC 60 NA Rattus norvegicus 81 Krt2 ENSRNOG00000009563 ENSRNOT00000082863 2 1 2 80 7 143416229 143416248 GAAGTTCAGAGCCAATACGA 58 143415897 143416187 TTCTTCATACTTGCTGTGGT 57 NA Rattus norvegicus 81 Krt2 ENSRNOG00000009563 ENSRNOT00000042180 2 1 2 80 7 143416220 143416238 GCCAATACGAGATCATCGC 59 143415890 143416177 CCTGGAGTTCTTCATTTGCC 59 NA Rattus norvegicus 81 Osgin1 ENSRNOG00000014948 ENSRNOT00000020225,ENSRNOT00000079240 3 2 2 81 19 52080993 52081862 GTAGTTATCATTGGCAATGGTC 58 52081904 52081922 CTCCTGGTTTCACATAGGG 57 NA Rattus norvegicus 81 Coro6 ENSRNOG00000014496 ENSRNOT00000019759,ENSRNOT00000086706 1 2 2 80 10 62694592 62694611 CTGGGTCATATCTTCACCAC 58 62694135 62694549 TTCTTCGAAGTTGTTCGGG 58 NA Rattus norvegicus 81 Coro6 ENSRNOG00000014496 ENSRNOT00000019759,ENSRNOT00000086706 2 2 2 80 10 62694591 62694610 TGGGTCATATCTTCACCACG 60 62694134 62694549 GTTCTTCGAAGTTGTTCGGG 60 NA Rattus norvegicus 81 Arhgef3 ENSRNOG00000014363 ENSRNOT00000087873 2 1 2 88 16 2890641 2984454 CAGTCTTGACATAAGTGAACCT 58 2984503 2984521 TCTTCACAGGTGGGATGAG 59 NA Rattus norvegicus 81 Mdn1 ENSRNOG00000047513 ENSRNOT00000076035,ENSRNOT00000090799 3 2 6 80 5 47907007 47907027 AAGAGCACAAGTTATCCTTCC 58 47907067 47907158 CCTCTTCTAACAACCTCAACC 58 NA Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000090937 1 1 8 80 20 1966123 1966142 AAGATCGGCTACTACGACAG 59 1962819 1966084 GGGAGTTCTGGATATAACAATCC 59 NA InUTR Rattus norvegicus 81 Gabbr1 ENSRNOG00000000774 ENSRNOT00000090937 3 1 8 82 20 1966125 1966145 AAGAAGATCGGCTACTACGAC 60 1962820 1966086 GGAGTTCTGGATATAACAATCCAC 59 NA InUTR Rattus norvegicus 81 Fndc1 ENSRNOG00000030210 ENSRNOT00000089458 1 1 2 87 1 47626235 47629318 TTAAAGACGTGGAGCCAGG 60 47629369 47629387 TCAGCTCTGTAAACAGGGC 60 NA Rattus norvegicus 81 Itpr1 ENSRNOG00000007104 ENSRNOT00000040255 1 1 5 112 4 140269797 140269815 AGTGGTAAGCACTCTGAGC 59 140269891 140272578 TCAACCAAGCAGGAAGAGG 60 NA Rattus norvegicus 81 Pgm2 ENSRNOG00000002185 ENSRNOT00000002977 1 1 2 80 14 45856216 45856234 ACACCTGAAACTCTGTGCT 59 45856050 45856174 TCCCAGTAGACCTTATAGCCA 60 NA Rattus norvegicus 81 Kcnip2 ENSRNOG00000018018 ENSRNOT00000024750 2 1 4 86 1 262892886 262913312 TATGACCAGCTTACGGACAG 59 262913361 262913379 TTCCTGGAGTTGTTCCAGG 59 NA Rattus norvegicus 81 Kcnip2 ENSRNOG00000018018 ENSRNOT00000024750 3 1 4 87 1 262892887 262913312 ATGACCAGCTTACGGACAG 60 262913363 262913381 TGTTCCTGGAGTTGTTCCA 59 NA Rattus norvegicus 81 Rfwd2 ENSRNOG00000042492 ENSRNOT00000076892 3 1 3 114 13 76994625 76994646 CTGTGTATGTAATGATGCACTC 57 76994720 77000121 CAAGGCTGTTTCTTTGTCTG 58 NA Rattus norvegicus 81 Fbrsl1 ENSRNOG00000030721 ENSRNOT00000050252 1 1 3 100 12 52356873 52358700 TGACAAAGGTTCTGGGAGAG 59 52358763 52358781 AAGACTCAGTGCTGAGCTC 59 NA Rattus norvegicus 81 Pigv ENSRNOG00000000121 ENSRNOT00000081841,ENSRNOT00000000133 3 2 2 82 5 151886964 151889572 CATGCATGTCCAGGTTCTC 59 151886900 151886918 GATCCTGAAGCAGGTAAGC 58 NA Rattus norvegicus 81 Abhd14b ENSRNOG00000012073 ENSRNOT00000016504 3 1 2 124 8 115151733 115152930 TTGATCTGCCAGGTCTTGG 60 115153016 115153036 GATCACAACTAGGGATCCCAG 60 NA Rattus norvegicus 81 Plaur ENSRNOG00000037931 ENSRNOT00000075167 2 1 2 80 1 81339735 81339753 ACTTCACCCAATGCAATGG 59 81341992 81343448 CACAGCTGTAACATTGGCC 60 NA Rattus norvegicus 81 Fam107b ENSRNOG00000014886 ENSRNOT00000020220,ENSRNOT00000079260 2 2 2 124 17 78493165 78493183 GGTGATGGAGAAGAGGAGG 59 78492251 78493077 CAAGTTCAAGCTGCTCCAG 59 NA Rattus norvegicus 81 Qk ENSRNOG00000048297 ENSRNOT00000086441 1 1 4 80 1 50933160 50933178 CGGTGGCTACTAAAGTTCG 58 50933222 50933511 CCAAATTGACTCGGTCTGC 59 NA Rattus norvegicus 81 Spdef ENSRNOG00000000491 ENSRNOT00000079933,ENSRNOT00000000583 1 2 2 126 20 7296594 7298836 AATATCACAGCCGACCCTG 60 7296486 7296504 ATAGCTCTTTGCCACCCAG 60 NA Rattus norvegicus 81 Trpc5 ENSRNOG00000027233 ENSRNOT00000009400 2 1 2 80 X 115764100 115764121 GAGAAAGCTTTCCTTAGTGCTG 60 115764040 115764061 ATTGTAGTAGATCTCGGCCTG 59 NA Rattus norvegicus 81 Numb ENSRNOG00000009653 ENSRNOT00000049481,ENSRNOT00000013026 2 2 3 80 6 107315170 107315191 TAGAGGTTGATGAGTCAAGAGG 59 107308310 107315132 CTTTGAAGAACTTCCTTTCAGC 58 NA Rattus norvegicus 81 Atp2c1 ENSRNOG00000013305 ENSRNOT00000018175 3 1 2 80 8 114013464 114013483 TGATCCCTGTACTGACATCC 59 114011254 114013420 CATTCTGAAGATCAGCCTGG 59 NA Rattus norvegicus 81 Morc2b ENSRNOG00000004501 ENSRNOT00000057608 1 1 1 60 7 15483356 15483378 GGTGAAGGTTAAGTTTCCATACC 60 15482951 15482970 CTGCTGTAATTGGTGAATGC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 RGD1563815 ENSRNOG00000029979 ENSRNOT00000083190 1 1 2 80 20 13604729 13606544 CCAGCCAGGTATGTTTGGA 60 13604667 13604687 TTTAGCTCTGAATCGAGACCA 59 NA Rattus norvegicus 81 LOC691083 ENSRNOG00000013437 ENSRNOT00000017952,ENSRNOT00000079743 2 2 2 80 3 95313044 95397388 CTACCTGCTGAGGTACTGTG 60 95397431 95397449 TTGCACTGATTGGTCACCA 60 NA Rattus norvegicus 81 Acsm1 ENSRNOG00000042084 ENSRNOT00000084260,ENSRNOT00000055083 3 2 4 80 1 189393395 189393416 CAGCTTATCAAAGAGCTACAGG 59 189393456 189394993 TGAAACAAACTCCACCTTCCT 60 NA Rattus norvegicus 81 Arr3 ENSRNOG00000002904 ENSRNOT00000076264 2 1 2 90 X 70445761 70446424 GATTCAGGAAAGCCCTGTG 59 70446477 70446496 CCCAGGACTACCTCTTAGAG 58 NA Rattus norvegicus 81 Urgcp ENSRNOG00000012184 ENSRNOT00000076740 2 1 3 84 14 85967804 85968311 GTCAAAGGGCATTCAGACC 59 85965410 85967756 CCAAATCTGCAATTGCCAC 58 NA Rattus norvegicus 81 Nedd4l ENSRNOG00000017610 ENSRNOT00000023890,ENSRNOT00000088624 3 2 3 80 18 60578293 60639869 AACAGATTGACACGAGACG 58 60651432 60651451 CTCCATGGTTGGATCTTCTG 58 NA Rattus norvegicus 81 Las1l ENSRNOG00000021748 ENSRNOT00000016042 2 1 3 80 X 65101933 65101951 TCTTGTTCACAGCCATGTC 58 65101715 65101816 GGAACTCAGATAATGGTAACCC 58 NA Rattus norvegicus 81 Las1l ENSRNOG00000021748 ENSRNOT00000016042 3 1 3 80 X 65099309 65099327 GATTGTTGAACTTCGCCAC 58 65098013 65099265 AGGACAAAGTAGCAACCTC 57 NA Rattus norvegicus 81 Htr7 ENSRNOG00000018827 ENSRNOT00000025450,ENSRNOT00000078150,ENSRNOT00000025493 2 3 3 93 1 254670995 254671014 CTTCTGCAACGTCTTCATCG 60 254558985 254670939 GATCCCAAGGTACCTGTCG 60 NA Rattus norvegicus 81 Ltbp2 ENSRNOG00000012094 ENSRNOT00000082792 2 1 3 81 6 108511886 108511904 GCTCCTTCAACTGTCTGTG 59 108507370 108511844 TCCTCACACTCATCAATATCCA 59 NA Rattus norvegicus 81 Fstl1 ENSRNOG00000002746 ENSRNOT00000003721 3 1 2 80 11 65798192 65799293 CAAACTGCTCAGGTACAACC 59 65798131 65798151 TTAGCCCTGATAAGGAGATCC 59 NA Rattus norvegicus 81 RGD1306063 ENSRNOG00000039871 ENSRNOT00000084687,ENSRNOT00000061214 3 2 2 81 15 12876870 12876890 CATAGATGTTGCAGAGAAGGC 59 12873173 12876830 GTAACGAGTCTCAAGAGAAAGC 59 NA Rattus norvegicus 81 Cacna2d1 ENSRNOG00000033531 ENSRNOT00000090240 2 1 4 80 4 15742460 15742480 CTTGGTATTGCCAACCTACAG 59 15740482 15742421 GTTTCTGAATATCTGGCCTGAG 59 NA Rattus norvegicus 81 Krt4 ENSRNOG00000032332 ENSRNOT00000082264,ENSRNOT00000012943 3 2 2 80 7 143519387 143519544 GGTACCAGATCAAGGTCCA 58 143519325 143519344 AGATCTCATTCTTGGTGCTC 57 NA Rattus norvegicus 81 Pitrm1 ENSRNOG00000016511 ENSRNOT00000086236 2 1 2 80 17 68488950 68489544 CCGACGTTGGATATAACGG 58 68489588 68489606 TCTTGACATCGTTCTCTGC 58 NA Rattus norvegicus 81 Ylpm1 ENSRNOG00000027317 ENSRNOT00000006492 1 1 3 80 6 108838021 108838039 ACCACCTCCAAATGAAGAG 57 108838648 108838830 GGGTCTTCTGACATCTCAC 57 NA Rattus norvegicus 81 Adh4 ENSRNOG00000046357 ENSRNOT00000090253 1 1 3 80 2 243736953 243736972 AGTCCTCATCGAGATGACAG 59 243737015 243738140 GACAATGGCTTCATGACCT 58 NA Rattus norvegicus 81 Atp6v0c ENSRNOG00000006542 ENSRNOT00000008736 3 1 1 158 10 13541902 13541921 GGCTGACATCAAGAACAACC 60 13537962 13537980 TTCATGATCAGCTCTGGCC 60 NA DesignNoJunction Rattus norvegicus 81 Trmt11 ENSRNOG00000014240 ENSRNOT00000019436 3 1 2 124 1 29432190 29432208 CCTTGAATCGCTATCTGCT 57 29436644 29440772 AAATGGAGACTTTGTCTCCTG 58 NA Rattus norvegicus 81 Tlk1 ENSRNOG00000060572 ENSRNOT00000083171 1 1 2 80 3 57021472 57021491 CAGATTGTGAATGCCTTACG 57 57020982 57021432 AAGGATATTTCCTGGCTTAAGG 58 NA Rattus norvegicus 81 Fam210a ENSRNOG00000016740 ENSRNOT00000084902,ENSRNOT00000022519 2 2 2 80 18 64053894 64057240 ATGTTTAAGATCGCCACGC 59 64053832 64053852 ATGACTTCGCAGATACTTCAC 58 NA Rattus norvegicus 81 Med9 ENSRNOG00000053961 ENSRNOT00000088300,ENSRNOT00000089724 2 2 2 87 10 46314836 46327719 CATCAAATGCATGGACAAGGA 59 46327768 46327786 TATGAGCTTCCGCATCTCC 59 NA Rattus norvegicus 81 H2afv ENSRNOG00000052275 ENSRNOT00000082893 2 1 1 60 14 86694865 86694883 TACAGTGCTGCAATTCTGG 58 86690124 86690142 AAGCATTACCTGCCAACTC 58 NA DesignNoJunction Rattus norvegicus 81 Tsta3 ENSRNOG00000009020 ENSRNOT00000012306 2 1 2 80 7 116960403 116960511 TATTGATGAGACCATGATCCAC 58 116960344 116960362 ACGTCAATCATCCTCTTGG 57 NA Rattus norvegicus 81 Kcnk2 ENSRNOG00000002653 ENSRNOT00000003684,ENSRNOT00000077282 3 2 2 80 13 107692265 107733311 GAAGGAAGAGGTGGGAGAG 59 107692203 107692223 CTCCTTGTTTCCTTGAACTCG 59 NA Rattus norvegicus 81 Nrxn2 ENSRNOG00000021103 ENSRNOT00000054828 2 1 3 142 1 221893579 221906692 CCTAGTACTGGTCCCACAG 59 221906798 221906816 AGGATAAGGATGCAGAGCG 59 NA Rattus norvegicus 81 Aldoc ENSRNOG00000011452 ENSRNOT00000086036 3 1 3 80 10 65587053 65587755 ATGCTTCTGGACAACTGTC 58 65587799 65587817 GCAATATCCGACAACTCCT 57 NA Rattus norvegicus 81 Snx11 ENSRNOG00000008642 ENSRNOT00000011474,ENSRNOT00000081348,ENSRNOT00000089146 1 3 3 80 10 84630213 84631885 GGAGACCAACTTAACAGTTGC 60 84630153 84630173 CTTCTCTTCACTGAGAGGTGG 60 NA Rattus norvegicus 81 Snx11 ENSRNOG00000008642 ENSRNOT00000089146 1 1 3 112 10 84637057 84637774 CATCCTCTAAGAGCCAGCC 60 84636030 84636050 GTTCTCCAACATCCTACACCA 60 NA Rattus norvegicus 81 Dlg1 ENSRNOG00000038597 ENSRNOT00000058885 3 1 2 106 11 72181379 72182199 TAGTTACCATGAATATGGCTGC 58 72178988 72179006 ATATGATGACTGGTCGGGT 58 NA Rattus norvegicus 81 Oaz3 ENSRNOG00000020863 ENSRNOT00000028303 1 1 2 80 2 195677635 195678268 GCTTAAAGAACTCTATTCAGCTGG 60 195677578 195677598 TCTAACTGAACTGGGTCTTGG 60 NA Rattus norvegicus 81 Btbd10 ENSRNOG00000014341 ENSRNOT00000081767 3 1 2 108 1 178157411 178191948 TTTCTAACTGGCACTGCCT 59 178157321 178157343 ACCTTCGTCTATCTCTTGATCTC 59 NA Rattus norvegicus 81 Pdgfa ENSRNOG00000001312 ENSRNOT00000042117,ENSRNOT00000001775,ENSRNOT00000091476 3 3 3 100 12 17743243 17743262 CTTGGAGACAAACCTGAGAG 58 17743324 17745689 TGGCTTCCTCAATACTTCTC 57 NA Rattus norvegicus 81 Asic1 ENSRNOG00000059765 ENSRNOT00000088191 1 1 3 80 7 141327240 141327258 GTTCCGCTTTAGCCAAGTC 59 141327299 141327840 ATCTCATACCTGTTGTTGAGCA 60 NA Rattus norvegicus 81 Usp1 ENSRNOG00000007890 ENSRNOT00000084640 2 1 2 132 5 117590849 117592020 TAAACAAAGTTTCTCCAGAGCC 59 117592112 117592131 GCTTCCGTATAATGATGGCA 58 NA Rattus norvegicus 81 RGD1565655 ENSRNOG00000049317 ENSRNOT00000074350 1 1 1 71 1 81594135 81594153 TAACAATGCTGAGAGCACC 58 81593993 81594011 GTGGTTCCCAGCTTAGAGG 60 NA DesignNoJunction Rattus norvegicus 81 Mtap ENSRNOG00000006615 ENSRNOT00000029486 1 1 2 81 5 107727498 107735724 CTTCTTGCCAGCATGTACG 59 107735767 107735787 CGTGAAGTGAATTAAGCTGGA 59 NA Rattus norvegicus 81 Synpr ENSRNOG00000008203 ENSRNOT00000011307 1 1 2 87 15 14622557 14622575 CAGGTGACCTTTGAAGTGC 59 14622353 14622508 AGAATTCTGCTGAGGATGAGG 60 NA Rattus norvegicus 81 Cenpi ENSRNOG00000033335 ENSRNOT00000088172,ENSRNOT00000046288 2 2 2 80 X 105177413 105178401 CAGTGCTTCTTACAAGAGGGA 60 105178443 105178461 ACAAGAGAAGCCATCCCAG 59 NA Rattus norvegicus 81 Cenpi ENSRNOG00000033335 ENSRNOT00000046288 1 1 2 83 X 105188514 105188663 GTACAGAAGGCAAAGTCAGAG 59 105188708 105188726 GCAATGAACCAGAGCTGTC 59 NA Rattus norvegicus 81 Cdv3 ENSRNOG00000010186 ENSRNOT00000082097 3 1 2 81 8 111840531 111840553 GACCACCAGAAATATACAGTGAC 59 111839432 111840491 TCTTTATCCTTCCGGCTCTC 59 NA Rattus norvegicus 81 Slc2a3 ENSRNOG00000008376 ENSRNOT00000085447,ENSRNOT00000088270,ENSRNOT00000011298 2 3 3 80 4 155561269 155561287 TTACTGTTGCCACAATCGG 59 155560837 155561228 AGTCCTTAATGATTGTCTCAGG 58 NA Rattus norvegicus 81 Slc2a3 ENSRNOG00000008376 ENSRNOT00000085447,ENSRNOT00000088270,ENSRNOT00000011298 3 3 3 81 4 155561270 155561289 TGTTACTGTTGCCACAATCG 59 155560838 155561229 GTCCTTAATGATTGTCTCAGGC 59 NA Rattus norvegicus 81 Tfcp2 ENSRNOG00000032395 ENSRNOT00000087632 1 1 2 99 7 142146930 142147304 GTACTTTCTTTGTGTACCATGC 58 142146852 142146872 ATCTGCTGAGGAGAAATACTG 57 NA Rattus norvegicus 81 Tifa ENSRNOG00000010941 ENSRNOT00000083193,ENSRNOT00000014533 1 2 2 66 2 232129924 232129942 GCCACTGGAAGACTCTCAG 60 232135464 232135483 GTCTCTTCTGTATCAGCGTC 58 NA DesignNoJunction, InUTR Rattus norvegicus 81 Mmel1 ENSRNOG00000012593 ENSRNOT00000017957 2 1 2 93 5 172303392 172303504 CTTAAGTACAGGGTGCTGG 58 172303561 172303579 GATTCATAGGGTGCATGGG 58 NA Rattus norvegicus 81 Abcc4 ENSRNOG00000010064 ENSRNOT00000013366 2 1 2 80 15 103885126 103927530 CTTGTTCTTCTGGTACTGGGA 60 103885066 103885085 ACGATTGCCTTCGTTAAGGA 60 NA Rattus norvegicus 81 Apmap ENSRNOG00000006795 ENSRNOT00000091310 1 1 3 100 3 146396287 146407087 GAGGGCAGTTCCTTTAGTG 58 146396205 146396223 GACTCCAACAGCATCATGG 59 NA Rattus norvegicus 81 Ap3s2 ENSRNOG00000043141 ENSRNOT00000068084,ENSRNOT00000082591 1 2 2 80 1 141641730 141641751 TTGTGGAGACTCTGGATAAGTG 60 141615633 141641691 GGATGTAGTGCACCTTATCCA 60 NA Rattus norvegicus 81 Cog7 ENSRNOG00000060008 ENSRNOT00000080534,ENSRNOT00000077869 3 2 2 80 1 191917418 191917436 CCAAATTCACCAATGGCCT 59 191911843 191917376 TGAAGTGAGACACATACTTGG 58 NA Rattus norvegicus 81 Atf2 ENSRNOG00000001597 ENSRNOT00000002174,ENSRNOT00000050513 1 2 2 80 3 60721405 60726731 AAGTCTGGCTATCATACTGCT 59 60721345 60721363 GATCGCTTCTGTATGTGGG 58 NA Rattus norvegicus 81 Mrpl16 ENSRNOG00000021005 ENSRNOT00000028517 1 1 1 60 1 228145648 228145666 CCACTGACTTCACAGAAGG 58 228146791 228146810 CAGTGAAGATAACCACCTCC 58 NA DesignNoJunction Rattus norvegicus 81 Zfp692 ENSRNOG00000002682 ENSRNOT00000038123,ENSRNOT00000078662 1 2 2 80 10 43751524 43751542 GATCTTTCCGCACTAGCAG 58 43751585 43751713 CACATATCTCACACTGCAGG 59 NA Rattus norvegicus 81 Ednra ENSRNOG00000012721 ENSRNOT00000078701 2 1 6 108 19 33932882 33932900 AAGTGTATGAGGAACGGCC 60 33932969 33979338 CACTGCTCTGTACCTTAAACAC 59 NA Rattus norvegicus 81 Pdgfrb ENSRNOG00000018461 ENSRNOT00000068535,ENSRNOT00000086033,ENSRNOT00000078764 1 3 3 80 18 56395290 56395308 TCATGAGTCATCTCGGACC 59 56395350 56396614 TGATAATGTAGATGGGCCCTC 59 NA Rattus norvegicus 81 Megf11 ENSRNOG00000010634 ENSRNOT00000050649,ENSRNOT00000037941,ENSRNOT00000082401 2 3 4 80 8 70175529 70175969 TATGTGAACGTGTTAGACTCC 58 70176008 70176029 AAGTTCAATGTAGAAGTCCTCG 58 NA Rattus norvegicus 81 Gria3 ENSRNOG00000007682 ENSRNOT00000010367 1 1 2 80 X 127804023 127804044 ATGAAAGTTGGTGGAAATCTGG 59 127804083 127819761 GTTTACAGGCGTTCTTAATGC 58 NA Rattus norvegicus 81 Golga2 ENSRNOG00000011884 ENSRNOT00000016341 1 1 2 80 3 11321262 11325955 CAGTCAGCAGAGAATGTGC 59 11325997 11326017 GACACCAAGAAACATAGTGGC 60 NA Rattus norvegicus 81 Golga2 ENSRNOG00000011884 ENSRNOT00000091171 1 1 2 80 3 11322331 11325955 CATTAGACAAGAGGAAGGTGC 59 11325995 11326015 CACCAAGAAACATAGTGGCAG 60 NA Rattus norvegicus 81 Arl5c ENSRNOG00000036880 ENSRNOT00000082427,ENSRNOT00000037318 3 2 2 81 10 85944823 85945566 GAATGCTGAGTTTGTCATCCT 59 85944762 85944782 GATCTTATACAGCTCCTCCCG 60 NA Rattus norvegicus 81 l7Rn6 ENSRNOG00000017383 ENSRNOT00000089014,ENSRNOT00000023468 2 2 2 80 1 154152106 154165295 CAGGTCTTAAATCTGGAGAAGGA 60 154152048 154152066 CAATCTGGGCAACAGATGG 59 NA Rattus norvegicus 81 Cntnap4 ENSRNOG00000011231 ENSRNOT00000066057,ENSRNOT00000085072 3 2 2 80 19 44974642 44974660 GTTTCTGCGCTTCATTCCT 59 44974703 44988570 TATAGGCAACCTCCGAACAC 60 NA Rattus norvegicus 81 Cntnap4 ENSRNOG00000011231 ENSRNOT00000066057 2 1 2 98 19 45073440 45074098 AATAGAATTACGCTCACCCAC 58 45074158 45074176 TTGTCATTGAAGTGGGTGG 58 NA Rattus norvegicus 81 Stmn1 ENSRNOG00000016810 ENSRNOT00000076052,ENSRNOT00000022574 3 2 4 104 5 152685882 152685900 TGGCAGAGGAGAAACTGAC 59 152685968 152686312 CAACGTGCTTGTCCTTCTC 59 NA Rattus norvegicus 81 Tmem63a ENSRNOG00000003310 ENSRNOT00000004519,ENSRNOT00000083608 1 2 2 80 13 99234195 99234214 ATCTACCTCTTCCTCACCGT 60 99234257 99236331 CTGTCTCACCAGACTCTCC 59 NA Rattus norvegicus 81 Pfkfb3 ENSRNOG00000018911 ENSRNOT00000025700 3 1 4 107 17 70703391 70703409 ACACAGTCCTGAAACTGAC 57 70703584 70711169 TCCTCATGTTCTCTGACCT 57 NA Rattus norvegicus 81 Pfkfb3 ENSRNOG00000018911 ENSRNOT00000068354,ENSRNOT00000051067 2 2 4 83 17 70704240 70704258 TTGCCAGTGTAGTCAGACC 59 70704305 70705176 GTCCCTTCTTTGCATCCTG 59 NA Rattus norvegicus 81 Slc25a40 ENSRNOG00000022837 ENSRNOT00000061342 2 1 2 80 4 22619751 22619772 CTTTGGATATGTCAACCTGGAG 59 22576782 22619713 AACATATCCCTGTAAACAACCC 59 NA Rattus norvegicus 81 Ptgdr ENSRNOG00000031307 ENSRNOT00000041790 1 1 1 69 15 19196481 19196499 CTTCACCATGTGTTCCCTG 59 19197914 19197932 ATTCTCACTGAAGCAGCCA 59 NA DesignNoJunction Rattus norvegicus 81 Phactr2 ENSRNOG00000015473 ENSRNOT00000088558 3 1 2 80 1 7371252 7371271 GCGGTTTAATGAGTATGTGG 57 7367975 7371209 GAAACTAATCTGGCCCAGG 58 NA Rattus norvegicus 81 RGD1312005 ENSRNOG00000022429 ENSRNOT00000029239 3 1 2 111 18 54108793 54118140 CCTTGTCTACTCACAGGGAG 59 54118212 54118232 CATCACTGAAGACATGGATGC 60 NA Rattus norvegicus 81 Mgrn1 ENSRNOG00000003234 ENSRNOT00000004416 2 1 2 80 10 10844878 10844896 GAGCTCTGTCTCCCATCTC 59 10841864 10844837 GGACACTGTCAGAATTAGAGTG 59 NA Rattus norvegicus 81 Picalm ENSRNOG00000018322 ENSRNOT00000092086 2 1 4 80 1 154447406 154447426 GCCAACCTTAATATACAGCCA 58 154447466 154447618 AGTACTTGTATCTGTGCTCCT 58 NA Rattus norvegicus 81 Arnt ENSRNOG00000031174 ENSRNOT00000064442,ENSRNOT00000044738 1 2 3 80 2 196637082 196637100 ATGATGATCCAGAGGCTGG 59 196637141 196638309 AGTTAGGAGAACTGGTTACCTG 59 NA Rattus norvegicus 81 Shprh ENSRNOG00000014450 ENSRNOT00000019893 1 1 2 80 1 5248343 5250563 AGCACTCCTGCTGATAACTC 60 5250602 5250624 CGGATTATAGTAGAGGTTCAAGC 59 NA Rattus norvegicus 81 Dctn4 ENSRNOG00000019298 ENSRNOT00000026394 3 1 2 81 18 55811283 55811803 CTATTCATGTAGTGGACAAGTACAG 59 55811841 55811860 CCGGCAAGTGTACTAATGGA 60 NA Rattus norvegicus 81 Fgb ENSRNOG00000007092 ENSRNOT00000040708,ENSRNOT00000009813 1 2 4 80 2 182030319 182030337 AGACGGAATACTGCCACAC 60 182029746 182030280 GAATGATCTCTTCACACTCTTTCC 60 NA Rattus norvegicus 81 Fgb ENSRNOG00000007092 ENSRNOT00000040708,ENSRNOT00000009813 2 2 4 80 2 182030322 182030340 CTCAGACGGAATACTGCCA 59 182029749 182030281 TGATCTCTTCACACTCTTTCCC 60 NA Rattus norvegicus 81 Pmpca ENSRNOG00000026775 ENSRNOT00000031607,ENSRNOT00000031622 3 2 2 80 3 3838275 3838293 CAACCTCCTACCACCACAG 60 3838337 3838479 TTTCTCGAACCTGTCGAGG 60 NA Rattus norvegicus 81 Ltbp4 ENSRNOG00000020871 ENSRNOT00000028322,ENSRNOT00000081796 1 2 2 80 1 84123004 84123022 CAGTCATTGTGTCCTCACG 59 84122127 84122961 TTGGCATTCATCCACATCTC 58 NA Rattus norvegicus 81 Pdzd11 ENSRNOG00000002838 ENSRNOT00000076360,ENSRNOT00000076028,ENSRNOT00000003872 2 3 4 80 X 70459696 70460243 CTTCATCTCCAAGGTGATTCC 59 70459636 70459656 TCATTCACAGCTAGAACTTGG 58 NA InUTR Rattus norvegicus 81 Plec ENSRNOG00000023781 ENSRNOT00000082271,ENSRNOT00000088945,ENSRNOT00000040762 3 3 10 89 7 117248581 117249303 ACTGCAGTCGGATATTCGG 60 117248510 117248529 ATACCATCAGCCTTGTCCAG 60 NA Rattus norvegicus 81 Zfhx3 ENSRNOG00000014452 ENSRNOT00000068594 3 1 2 123 19 42785530 42800102 AAAGACCAGGAAGTCGGTG 60 42781453 42781471 TTGGCCTCTTCGATGAGAG 59 NA Rattus norvegicus 81 Ier3 ENSRNOG00000000827 ENSRNOT00000001099,ENSRNOT00000084981 1 2 3 232 20 3439933 3439951 ATCTCCACACCATGACTGG 59 3439612 3439630 CTTGGCAATGTTGGGTTCC 60 NA DesignNoJunction Rattus norvegicus 81 Tmem63c ENSRNOG00000011334 ENSRNOT00000015571,ENSRNOT00000089644 2 2 2 80 6 111077267 111077703 CACAATGACAGCCTAACCTC 59 111077745 111077764 TTCTGCCTCCAAGTAAACCT 59 NA Rattus norvegicus 81 Syt17 ENSRNOG00000017136 ENSRNOT00000078825,ENSRNOT00000023090 3 2 2 80 1 188088378 188090103 GGAGAATCTCCAGTCTGGA 58 188088316 188088334 CACTGAGAACACCGAACTC 58 NA Rattus norvegicus 81 Aoc1 ENSRNOG00000008575 ENSRNOT00000059136,ENSRNOT00000082905 1 2 2 80 4 78514251 78514269 TTCTATGGCTGAGCAGGTG 60 78514311 78514633 GTTACAGCCAAAGGATACCTG 59 NA Rattus norvegicus 81 Aoc1 ENSRNOG00000008575 ENSRNOT00000059136,ENSRNOT00000082905 3 2 2 81 4 78514247 78514265 TCCATTCTATGGCTGAGCA 59 78514310 78514630 ACAGCCAAAGGATACCTGG 59 NA Rattus norvegicus 81 Map1lc3b ENSRNOG00000017905 ENSRNOT00000051352,ENSRNOT00000079382 1 2 3 80 19 53638875 53639690 GAAGAACGCAAACAAAGAGTG 59 53639732 53639750 TGCTGTAGAACCTACTGGG 58 NA Rattus norvegicus 81 Gtf2h1 ENSRNOG00000012360 ENSRNOT00000066791,ENSRNOT00000087920 3 2 2 80 1 102864264 102867294 ATTAGACGAGGGCTATGGC 59 102867335 102867356 ATGGCAGCATTACTATTCTCCT 60 NA Rattus norvegicus 81 Ccz1b ENSRNOG00000001032 ENSRNOT00000080567 1 1 2 89 12 12649924 12649942 CAGACACATCGAACCTGAG 58 12652549 12652798 TGAGGTAAACTTCCGTAGTG 57 NA Rattus norvegicus 81 Trrap ENSRNOG00000025244 ENSRNOT00000076323 1 1 3 86 12 11605150 11605255 TAAAGCTCCTGGTGCTCAG 59 11605082 11605100 ATGGCGTACTTCACAAGCT 60 NA Rattus norvegicus 81 Mrps21 ENSRNOG00000024845 ENSRNOT00000034074,ENSRNOT00000083086 2 2 2 80 2 197981407 197981425 CTGAAGTTCATTGCCAGGA 58 197975042 197981363 GGTGAGGATTCTGTTCAGG 58 NA Rattus norvegicus 81 Dip2a ENSRNOG00000043212 ENSRNOT00000066017,ENSRNOT00000083878 2 2 2 80 20 13113953 13114979 GAAGATGATTGTCGAGGTCAG 59 13115021 13115039 GCTTCTTTGGACTTGAGCA 58 NA Rattus norvegicus 81 Dmrtc1c1 ENSRNOG00000037923 ENSRNOT00000057644 3 1 2 102 X 72687426 72687444 CTCAGCACTTCCACCTCTC 60 72687504 72688393 GATCATATTTGAGTATGGGTTGGAC 60 NA Rattus norvegicus 81 Phrf1 ENSRNOG00000017299 ENSRNOT00000051755,ENSRNOT00000023376 3 2 2 80 1 214247655 214247675 AACAACTCAGAAGAAAGGACG 59 214247715 214247965 GTGCAGCTTCTTCATGTACTC 59 NA Rattus norvegicus 81 Vcsa1 ENSRNOG00000001942 ENSRNOT00000087477,ENSRNOT00000031642 2 2 2 82 14 21490739 21552671 TATAGCATGCTTCCAGTCAG 57 21490676 21490696 GAGTTGAAGGATCTTGTTGTC 57 NA Rattus norvegicus 81 Apcdd1l ENSRNOG00000028440 ENSRNOT00000036546,ENSRNOT00000091966 3 2 2 183 3 171885206 171890355 AAAGTGTTGTGCACCACAC 60 171885041 171885059 TCAAAGCTGAAATGCCGAG 59 NA Rattus norvegicus 81 Zmym6 ENSRNOG00000013865 ENSRNOT00000079732 2 1 2 100 5 145146372 145148308 CAGCATAAAGGAATATGGACCTC 59 145149568 145149586 GGGATGGTAGACCAACCTG 60 NA Rattus norvegicus 81 Zmym6 ENSRNOG00000013865 ENSRNOT00000079732 3 1 2 117 5 145146277 145146295 CTACATCCCAAGTCCGACC 60 145146372 145148308 GAGGTCCATATTCCTTTATGCTG 59 NA Rattus norvegicus 81 Vwa3b ENSRNOG00000023566 ENSRNOT00000023617,ENSRNOT00000090492,ENSRNOT00000088239 2 3 7 80 9 43625918 43625936 GAGCCAATGGTTGTGAGAG 59 43625977 43632707 GTAAATGGCTTCAATGGTTTCG 59 NA Rattus norvegicus 81 Rbfox1 ENSRNOG00000002827 ENSRNOT00000082332 1 1 2 96 10 8347997 8354320 TTGCTACAGGGTGGTTACG 60 8331934 8331952 TTGCAACGAAGACGAACTG 59 NA Rattus norvegicus 81 Taf1 ENSRNOG00000002565 ENSRNOT00000076799 1 1 2 80 X 71448769 71448787 AAACAAGCTCTCAGCTGTC 58 71448830 71449631 ATGCGTACATAACCAGTAGC 58 NA Rattus norvegicus 81 LOC680663 ENSRNOG00000011120 ENSRNOT00000014811,ENSRNOT00000089579 1 2 2 80 X 110683627 110692686 GAGCCATATCAGACCTATTTGG 59 110692726 110692745 CTCTGGACACAAAGCATTCC 59 NA Rattus norvegicus 81 Dpt ENSRNOG00000002947 ENSRNOT00000077070,ENSRNOT00000066119,ENSRNOT00000079796 1 3 3 91 13 83073934 83085477 CATGGAATGGTACCAGAAGTG 59 83085530 83085548 ATTGCCACTCTCGATCCAG 60 NA Rattus norvegicus 81 Dpt ENSRNOG00000002947 ENSRNOT00000077070,ENSRNOT00000079796 2 2 3 92 13 83085514 83085533 TTACTTCGAGTCAGTGCTGG 60 83085588 83097624 TACTCGGTTGTCATCCAGC 60 NA Rattus norvegicus 81 Adcyap1r1 ENSRNOG00000012098 ENSRNOT00000035722 3 1 4 80 4 85694886 85701103 CAGCATCTACTTCAGCTGC 59 85701145 85701165 AGTTCTGACATCTTGCAAGAG 58 NA Rattus norvegicus 81 Prr3 ENSRNOG00000025806 ENSRNOT00000035838,ENSRNOT00000089869,ENSRNOT00000078658,ENSRNOT00000087568,ENSRNOT00000078538 1 5 6 80 20 3305442 3306023 CGATGATGGAAGACAAATCTGAC 60 3306059 3306081 CACAATGGTCTTCATATCGACAG 60 NA Rattus norvegicus 81 Hoxd13 ENSRNOG00000001588 ENSRNOT00000002155 2 1 1 75 3 61591088 61591106 GTATTGTGCCAAGGACCAG 59 61591978 61591997 CTGGTTTAAAGCCACATCCC 59 NA DesignNoJunction Rattus norvegicus 81 Kif1b ENSRNOG00000057626 ENSRNOT00000077784 1 1 7 80 5 165981712 165981731 CATTGCACTGATTGGACTGG 60 165980839 165981669 AAAGCACAGACCACAAACC 59 NA Rattus norvegicus 81 LOC100360274 ENSRNOG00000047581 ENSRNOT00000061476,ENSRNOT00000079703 3 2 3 148 9 12477292 12581721 ACAGTTCCTACCGCATCAG 60 12581833 12581851 ACAGAACCTCTTTGCCTCC 60 NA Rattus norvegicus 81 Prpf18 ENSRNOG00000018396 ENSRNOT00000091554 1 1 2 80 17 77605086 77605221 GTGGCTACAAGCCTATAAGTG 59 77607641 77607662 TTGATGACGTTAGTGGTTTCTG 59 NA Rattus norvegicus 81 Ddr1 ENSRNOG00000057125 ENSRNOT00000083223,ENSRNOT00000089417,ENSRNOT00000085380,ENSRNOT00000085635 1 4 6 80 20 3565651 3566906 ATATACTGCTGGAGGGCTG 59 3566949 3566968 CTCTGCCTGAAATCATCCAG 59 NA Rattus norvegicus 81 Xiap ENSRNOG00000006967 ENSRNOT00000078482,ENSRNOT00000009336,ENSRNOT00000085110 2 3 3 80 X 128446880 128446898 TGCAGATCTTGTGAGTGCT 59 128446939 128452171 TCAGTACTGATGTCTTTCTGCA 60 NA Rattus norvegicus 81 Pacsin2 ENSRNOG00000009756 ENSRNOT00000013428,ENSRNOT00000088125,ENSRNOT00000013398 1 3 4 80 7 124230076 124233814 AGTTTGAGGAGTGGTCTGC 60 124230014 124230032 TTAGGGTGACACCATCAGC 59 NA Rattus norvegicus 81 Kcnj12 ENSRNOG00000002303 ENSRNOT00000089123,ENSRNOT00000057953 2 2 2 60 10 47340650 47340668 GAGGATGAGGTGGCTACAG 59 47340692 47340710 TGTCAAAGTCATGCTCAGG 58 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Suco ENSRNOG00000026542 ENSRNOT00000087323,ENSRNOT00000084058 1 2 4 119 13 79740181 79744857 GGCAAAGAAGTAGACCCGA 59 79738394 79738414 ATCTGCAGGCTTTATTGTCTC 59 NA Rattus norvegicus 81 Map7 ENSRNOG00000012701 ENSRNOT00000017401,ENSRNOT00000079845 2 2 2 81 1 15731791 15736439 ATTCACGGGATATCGAGCT 58 15736484 15736502 GAGACAGAGTCCTTCGGAC 59 NA Rattus norvegicus 81 Ctrc ENSRNOG00000013745 ENSRNOT00000081899 1 1 2 81 5 160402308 160404845 GACATACACATAGCAGCCTC 58 160402246 160402264 CATCCTCTCCTCCTACCAC 58 NA Rattus norvegicus 81 Grm5 ENSRNOG00000016429 ENSRNOT00000050639 1 1 2 96 1 151730178 151782375 GAAACCCTAAGCTCCAACG 59 151782435 151782453 TGATGTGGACAGACAGTCG 60 NA Rattus norvegicus 81 Grm5 ENSRNOG00000016429 ENSRNOT00000050639 2 1 2 98 1 151730178 151782375 GAAACCCTAAGCTCCAACG 59 151782436 151782455 GTTGATGTGGACAGACAGTC 59 NA Rattus norvegicus 81 Pde7b ENSRNOG00000013436 ENSRNOT00000018556 2 1 2 91 1 16109258 16109278 GAGAATCCTGAGCAGAATGTC 59 15974755 16100587 AGTCGTACATCTCCTTGGC 59 NA Rattus norvegicus 81 Nrcam ENSRNOG00000004067 ENSRNOT00000050222,ENSRNOT00000078583,ENSRNOT00000091677 1 3 8 80 6 64838574 64838592 CAAACATCAGTGGGATCGG 59 64838633 64839959 AAGAATACCAGCCTTCTTACCT 59 NA Rattus norvegicus 81 Gpr155 ENSRNOG00000018485 ENSRNOT00000086329,ENSRNOT00000025158 2 2 2 80 3 60086736 60088295 GCCTGGTCTCCTTGATCTG 60 60086674 60086692 TAGCTGTGAGCATGTGAGG 60 NA Rattus norvegicus 81 Agfg2 ENSRNOG00000001404 ENSRNOT00000077711,ENSRNOT00000064572 3 2 2 86 12 22113071 22116200 GCAGAATGGTTCTTCCTTTGG 60 22116248 22116266 GGATTGGTGGAGATCCCAG 60 NA Rattus norvegicus 81 Igf1 ENSRNOG00000004517 ENSRNOT00000081822,ENSRNOT00000005995,ENSRNOT00000085680 2 3 4 82 7 28468859 28468877 TGACATGCCCAAGACTCAG 60 28470322 28485473 GTGTACTTCCTTTCCTTCTCCT 60 NA Rattus norvegicus 81 Immt ENSRNOG00000009097 ENSRNOT00000043199 2 1 2 80 4 99769248 99769269 ATGAGGACACTATAAACACCGA 59 99769310 99773153 AACTCTTGGCTAGAGCTGC 60 NA Rattus norvegicus 81 Zscan29 ENSRNOG00000012419 ENSRNOT00000035889 2 1 2 80 3 113126804 113126827 ATGGTTTCCTCGTTTCCCT 59 113126742 113126760 GACCACTCTTGACCTTCCT 59 NA Rattus norvegicus 81 RGD1310507 ENSRNOG00000009434 ENSRNOT00000056483 1 1 3 90 8 111749370 111752916 GCAAATTTGGAAGAACTGACTC 59 111749301 111749319 CGAGAGTCAGGATTAGCCC 59 NA Rattus norvegicus 81 Zfp622 ENSRNOG00000059443 ENSRNOT00000087109,ENSRNOT00000084541 1 2 2 80 2 78408015 78409684 AGGAAGACGACGAAGATTGG 60 78409727 78409745 CATCCTCTTCCTCCACTCC 59 NA Rattus norvegicus 81 Ctdspl2 ENSRNOG00000022141 ENSRNOT00000078978,ENSRNOT00000037168 3 2 2 81 3 113936773 113936793 AATAGGAAACCTGCTCTTCCT 59 113936836 113940606 GCACTAGCGTTTCATCCAG 59 NA Rattus norvegicus 81 Scn8a ENSRNOG00000005309 ENSRNOT00000080923 2 1 2 80 7 142645204 142650187 AACACGCTAGTGAAGAGCT 59 142650230 142650249 AGATGAGGAAAGTGTTGGCA 60 NA Rattus norvegicus 81 Ube3b ENSRNOG00000047219 ENSRNOT00000074000,ENSRNOT00000080049 3 2 2 80 12 47957901 47958009 CCTGTTCAAGACAACCAGTG 59 47957840 47957859 AAGAGCTGCAGGTAGTTCTC 60 NA Rattus norvegicus 81 Surf4 ENSRNOG00000060005 ENSRNOT00000071754 3 1 2 80 3 5472290 5472309 CTATCACATGGAGAAGCAGG 58 5470391 5472248 AAGACATTCAGACTACCGTC 57 NA Rattus norvegicus 81 LOC100364854 ENSRNOG00000009074 ENSRNOT00000060254 2 1 10 80 15 32425454 32425474 TCCTTCAACCTGAAGAAATCG 58 32614127 32806043 GGCATTGTTGTTATTGCCC 58 NA Rattus norvegicus 81 Sympk ENSRNOG00000014353 ENSRNOT00000019814,ENSRNOT00000084985 2 2 2 80 1 79953615 79953997 GCTTGGAGAAGAAAGAGGT 57 79954041 79954059 GGTTGAAGACCTCCTTCAC 58 NA Rattus norvegicus 81 Nsmf ENSRNOG00000008810 ENSRNOT00000012129 3 1 5 114 3 2264962 2264980 ACCCTTTCAGCTTCCAGAC 60 2266826 2267931 CTCTGTAGGTCACTGCTCTG 60 NA Rattus norvegicus 81 Tcf4 ENSRNOG00000012405 ENSRNOT00000081797,ENSRNOT00000020431,ENSRNOT00000080844 2 3 3 80 18 65388812 65388833 TCCCAGTACTACCCATATTCCA 60 65388873 65389351 TTTCTTTGTCTGCACCTCCA 60 NA Rattus norvegicus 81 Vdac2 ENSRNOG00000013505 ENSRNOT00000018462,ENSRNOT00000086864 2 2 2 80 15 2639717 2639735 ACATCAGGTACCAACTGCA 59 2636609 2639676 GACCTTTGCAGAAATAGAAGCA 59 NA Rattus norvegicus 81 Tfdp2 ENSRNOG00000011241 ENSRNOT00000081204,ENSRNOT00000015015 3 2 2 80 8 104152437 104152457 GAAGTAGCTGATGAACTGGTG 59 104152497 104154706 GTTCTTCTGATCATAAGCCGA 58 NA Rattus norvegicus 81 Sgsm2 ENSRNOG00000027194 ENSRNOT00000034298,ENSRNOT00000079926 2 2 2 80 10 61707923 61707941 AGGATGAGCCAGAACTTCC 59 61706684 61707880 GTCCAAGATCTGGATGAGGG 60 NA Rattus norvegicus 81 Car8 ENSRNOG00000005669 ENSRNOT00000007802,ENSRNOT00000081296 3 2 2 80 5 21291773 21293010 TATTACCAGACCCTCTTCTGC 59 21291713 21291731 AGGTAACTCCTTCACTGCA 58 NA Rattus norvegicus 81 Car8 ENSRNOG00000005669 ENSRNOT00000007802 1 1 2 81 5 21291725 21291743 ACTATTCCACCTTGCAGTG 58 21277900 21291681 ATTCTTCTATCTGCAGCTGG 58 NA Rattus norvegicus 81 Cldn2 ENSRNOG00000054495 ENSRNOT00000090928,ENSRNOT00000085078 1 2 2 240 X 111122743 111122761 TTCGAGAAAGAACAGCTCC 58 111130522 111130540 CTAGGATGTAGCCCACCAG 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Golim4 ENSRNOG00000024213 ENSRNOT00000037115 3 1 3 80 2 174347617 174347639 GAGAGGAGAATAGACAACTACGA 59 174342074 174347580 ATTCTGCAACTTGAGTCTTGAC 59 NA Rattus norvegicus 81 Nup37 ENSRNOG00000004727 ENSRNOT00000079168,ENSRNOT00000006760 2 2 3 80 7 28741998 28742017 TTTGCAACCACTGGATATCC 58 28742060 28743075 AATGAGGATGGGCTGAGAG 59 NA Rattus norvegicus 81 Inpp5e ENSRNOG00000019039 ENSRNOT00000079882,ENSRNOT00000025764 1 2 2 80 3 3845414 3845434 ACAAGTTTGACATTGGGAAGG 59 3844833 3845373 TGTATAGGACTCGGTCTGTG 58 NA Rattus norvegicus 81 Nek1 ENSRNOG00000010418 ENSRNOT00000082712 3 1 2 80 16 32371756 32371775 GGCATCTCTATATGGAGGCA 59 32371272 32371715 CTTGCCAGATAAACCTCTTCC 59 NA Rattus norvegicus 81 Atp7a ENSRNOG00000061367 ENSRNOT00000089381,ENSRNOT00000080141,ENSRNOT00000091527 2 3 3 85 X 77119976 77119998 GGGAATGACATGTATTTCCTGTG 60 77120037 77135888 CTAGGGAAACTTTAATGTGATGGAC 60 NA Rattus norvegicus 81 Atp7a ENSRNOG00000061367 ENSRNOT00000080141,ENSRNOT00000091527 2 2 3 80 X 77137647 77137665 ACTAACCTCTCCAGAACCC 58 77137709 77138844 GGCTCTTTCATGTCTGCTG 59 NA Rattus norvegicus 81 Fbln5 ENSRNOG00000050539 ENSRNOT00000007004,ENSRNOT00000084815 3 2 2 90 6 125656209 125656227 TTGCTACAATCTGCAAGGG 58 125652926 125656155 GCACATACAGCGGTTATCC 59 NA Rattus norvegicus 81 Cpeb1 ENSRNOG00000019161 ENSRNOT00000026009,ENSRNOT00000078789 2 2 3 84 1 143179901 143180851 GGTAATATGCCTAAAGGGTATGTG 59 143179840 143179858 GGTCATGAGAACAAGCCTG 59 NA Rattus norvegicus 81 Slc41a3 ENSRNOG00000045821 ENSRNOT00000080734 1 1 2 81 4 123489643 123502737 CAACTATTTCCAGCACTGGC 60 123489581 123489599 TCCCTTCAGACCAACAAGG 59 NA Rattus norvegicus 81 Cacnb1 ENSRNOG00000004518 ENSRNOT00000082974 2 1 2 80 10 85964774 85964792 GACAACTCCAGTTCCAGTC 58 85964346 85964731 AGTCATTTCGTTACCACTGG 58 NA Rattus norvegicus 81 Tdrkh ENSRNOG00000020860 ENSRNOT00000028299,ENSRNOT00000081335 3 2 2 80 2 195668729 195670514 GACGTCTATGTTTGAAATTCCC 58 195670554 195670573 TCAGAAGCAGAAACGTAGAC 58 NA Rattus norvegicus 81 St6gal1 ENSRNOG00000001823 ENSRNOT00000044591 2 1 3 80 11 80933954 80934585 TCCTGGGCAAGTTAGTCAC 59 80933892 80933914 GGTCCCATACAATTAGGATTCCT 60 NA Rattus norvegicus 81 Atmin ENSRNOG00000051838 ENSRNOT00000079159 3 1 1 100 7 74327028 74327047 AGAAACCCAAACCTGTAGGA 59 74326944 74326962 CATATGACGAATGGACGCC 59 NA DesignNoJunction Rattus norvegicus 81 Baiap2 ENSRNOG00000004049 ENSRNOT00000005687 3 1 2 82 10 109179989 109180007 CTACAGTGTGGCAGTTCCT 59 109181270 109187065 CATTGGCAAAGGGATTCCTG 60 NA Rattus norvegicus 81 Dym ENSRNOG00000018425 ENSRNOT00000024950 1 1 2 84 18 71221185 71251381 CAGATTATGCCCAGGACCT 59 71251428 71251447 AGAGAATTAGTCAGGCAGGA 58 NA Rattus norvegicus 81 Stxbp1 ENSRNOG00000015420 ENSRNOT00000021178 2 1 2 151 3 11831664 11831682 TTGGCACAAGAATAAGGCC 58 11825464 11831549 TGTGCGTGGATCCTATGAG 59 NA Rattus norvegicus 81 Abca16 ENSRNOG00000015783 ENSRNOT00000088121 1 1 2 96 1 190229542 190229914 ATGTCCTACTCGTTTGGCT 59 190229968 190229992 GTCCAACATTCCATAGTATTCAGAG 60 NA Rattus norvegicus 81 Abca16 ENSRNOG00000015783 ENSRNOT00000001933 3 1 2 80 1 190223398 190224330 TACTCTTTATCGTGGAGGAGC 59 190224370 190224390 CAATGGCATAGCATGTAAGGA 59 NA Rattus norvegicus 81 Neu2 ENSRNOG00000016962 ENSRNOT00000080930,ENSRNOT00000022818 1 2 2 84 9 94722221 94723633 CATGTCAAGTGGCAACCTG 60 94723680 94723699 TGTCATACAAGGGACATGGA 59 NA Rattus norvegicus 81 Neu2 ENSRNOG00000016962 ENSRNOT00000080930,ENSRNOT00000022818 3 2 2 86 9 94722221 94723633 CATGTCAAGTGGCAACCTG 60 94723681 94723701 CTTGTCATACAAGGGACATGG 59 NA Rattus norvegicus 81 Slc28a2 ENSRNOG00000028668 ENSRNOT00000024658,ENSRNOT00000036435 3 2 2 80 3 114370520 114370539 GGCCTTCATCAATTCTACCC 58 114370582 114370766 TAGGAGCAGATGACCTGGA 59 NA Rattus norvegicus 81 LOC100910122 ENSRNOG00000047933 ENSRNOT00000037303,ENSRNOT00000091242 2 2 2 147 10 37039447 37039557 AATCTGGATGGCCAGAAGG 60 37039668 37041546 AGAAGGCTGCAATCTTCCT 59 NA Rattus norvegicus 81 Tmprss5 ENSRNOG00000008058 ENSRNOT00000011107 2 1 2 80 8 53417695 53417713 GTGGCTGTGTAATACTGGG 58 53417754 53418396 GCCAGAGATACAACACTAAGAG 58 NA Rattus norvegicus 81 Poldip3 ENSRNOG00000022877 ENSRNOT00000055988,ENSRNOT00000082524 2 2 2 81 7 124001705 124001723 ATGACATTGTAGCACCCGT 59 124000080 124001660 CTCATTCCAGTCGTGTGGT 60 NA Rattus norvegicus 81 Cd34 ENSRNOG00000045558 ENSRNOT00000084709 3 1 2 95 13 113710385 113711082 AGAAAGGCTGGGTGAAGAC 60 113711141 113711159 GCCTTTCCCTGAGTCTCAG 60 NA Rattus norvegicus 81 Hm13 ENSRNOG00000007738 ENSRNOT00000087075,ENSRNOT00000010251 3 2 2 80 3 148169774 148169794 GAGTTTGACACTAAGGACCTG 58 148169833 148169945 AATCCAATGCTTCCTTAGAAGG 59 NA Rattus norvegicus 81 Erbb2 ENSRNOG00000006450 ENSRNOT00000078744 1 1 3 103 10 86383148 86383475 AAGAGGATTGTGCTGTGTC 58 86383708 86383727 GAAATGACTGCAGTTGACAC 58 NA Rattus norvegicus 81 Zbtb7a ENSRNOG00000020161 ENSRNOT00000027323,ENSRNOT00000082126 3 2 2 121 7 11436251 11436271 ATTTGCGAGAAGGTGATTCAG 59 11433455 11436168 TTCAGCTTGTCCTGTCTGG 60 NA Rattus norvegicus 81 Ldhd ENSRNOG00000019036 ENSRNOT00000079539 3 1 2 81 19 43839402 43839420 AAAGCGCAATGAACTTTGG 58 43838823 43839358 GGAATAGGCCTTACTTCCTG 58 NA Rattus norvegicus 81 Usp31 ENSRNOG00000025793 ENSRNOT00000055048,ENSRNOT00000082927 2 2 2 80 1 191618308 191620047 GGAGTGAAGACGATGGAGG 60 191618246 191618266 CAGAAGATCTGGATGACAAGC 59 NA Rattus norvegicus 81 Apob ENSRNOG00000005542 ENSRNOT00000046811 1 1 2 81 6 33215883 33223885 CACAGCCAATAATGGGCTG 59 33223930 33223948 GCCTTCATTGTAGAGGCAG 58 NA Rattus norvegicus 81 Apob ENSRNOG00000005542 ENSRNOT00000046811 2 1 2 82 6 33215883 33223885 CACAGCCAATAATGGGCTG 59 33223931 33223949 AGCCTTCATTGTAGAGGCA 59 NA Rattus norvegicus 81 Rab3gap2 ENSRNOG00000002353 ENSRNOT00000034888,ENSRNOT00000003216 1 2 2 80 13 103199627 103199645 CTTGTTGACCCTGTGTCTG 58 103199686 103199940 TCTTTCACTCTTCTTGTCACTC 58 NA Rattus norvegicus 81 Rab3gap2 ENSRNOG00000002353 ENSRNOT00000034888,ENSRNOT00000003216 3 2 2 80 13 103185837 103185930 AGTCAGAAGAGGAGTTCCA 57 103185974 103185992 GTAGAACCGCACATAACCA 58 NA Rattus norvegicus 81 Pifo ENSRNOG00000016842 ENSRNOT00000049155 1 1 2 81 2 208633771 208633792 AGACCAAAGAGAATGAATCCCT 59 208623044 208633735 GAGTATTTATTCACCTTCCCATGAG 60 NA Rattus norvegicus 81 LOC100151767 ENSRNOG00000009958 ENSRNOT00000086119,ENSRNOT00000013197 2 2 2 80 8 55045945 55045967 GAGAACTAGAGAAGCAAATGGAG 59 55044509 55045906 TTCTCATCCGACTTGAGCTG 60 NA Rattus norvegicus 81 Map2 ENSRNOG00000011841 ENSRNOT00000043627 2 1 3 80 9 73418546 73418566 AGAAACAGTTAATCTGCCACC 59 73418607 73429566 ATCTTCGAGGCTTCTTCCAG 60 NA Rattus norvegicus 81 Parvb ENSRNOG00000055305 ENSRNOT00000080152,ENSRNOT00000082805 2 2 2 103 7 125265537 125265555 GGACAAGCTCAACCTTGTG 59 125266017 125271098 CATCTGCAAACTGGGTCTC 59 NA Rattus norvegicus 81 Sec24a ENSRNOG00000004563 ENSRNOT00000090475,ENSRNOT00000006356 3 2 2 80 10 37158260 37163054 CGAGTAAAGGTGAAAGAAGAATCC 60 37158203 37158225 CTCCAAGAAAGACTTCATTCAGG 60 NA Rattus norvegicus 81 LOC689757 ENSRNOG00000037076 ENSRNOT00000042872,ENSRNOT00000045501 2 2 2 84 4 162185000 162189811 ATTCCTCACAGTAAAGTGCG 58 162184935 162184953 CTCCATAGCAGCAGTAACG 58 NA Rattus norvegicus 81 Ppp6r3 ENSRNOG00000015540 ENSRNOT00000020886 1 1 2 80 1 218704417 218704435 GAAACACTCAGCCTCACTG 59 218700125 218700413 TTCTTCCTCACGGTAGGAC 58 NA Rattus norvegicus 81 Col17a1 ENSRNOG00000012110 ENSRNOT00000016645 2 1 2 87 1 267437790 267438617 TCAAGGACCTAAAGACCGTG 60 267437616 267437634 TTGTCCCTTTGGTCCTTCC 60 NA Rattus norvegicus 81 Eif4e2 ENSRNOG00000019634 ENSRNOT00000065743 1 1 2 86 9 94316803 94323053 ATAAGAGCCAGAGTGGTGG 59 94323103 94323121 ATGAAAGTCACTGTGGCCT 59 NA Rattus norvegicus 81 Clec2dl1 ENSRNOG00000007866 ENSRNOT00000087850,ENSRNOT00000047790 2 2 2 101 4 162393021 162397228 AATTCCTCACAGTGAAATGCTC 59 162397290 162397308 CTGAGGACCACGATCACTG 60 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000020656 ENSRNOT00000028039,ENSRNOT00000090164 1 2 3 88 8 117769894 117769912 AAATCCAGGACCACTACCC 59 117769964 117771863 GTCTTCATAGGACTCGCCC 60 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076598,ENSRNOT00000076089,ENSRNOT00000010015 1 5 5 95 10 70167492 70167510 TACCTCCTACCTCACCTGG 59 70163985 70167433 CCTCTGAGTCAACGGACTG 60 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076598,ENSRNOT00000076089,ENSRNOT00000010015 2 5 5 97 10 70167493 70167512 AGTACCTCCTACCTCACCTG 60 70163985 70167433 CCTCTGAGTCAACGGACTG 60 NA Rattus norvegicus 81 Rffl ENSRNOG00000007596 ENSRNOT00000041389,ENSRNOT00000076596,ENSRNOT00000076089,ENSRNOT00000010015 2 4 5 97 10 70164875 70164893 CATTGGCCATGTGTCTCAG 59 70163985 70164814 CCTCTGAGTCAACGGACTG 60 NA Rattus norvegicus 81 Clip4 ENSRNOG00000008806 ENSRNOT00000065421 3 1 2 80 6 23274249 23274270 GCTCAACTTATAGACCTGGGA 59 23274189 23274209 GTATGAAGCATAATGCAAGGC 58 NA Rattus norvegicus 81 Ccdc148 ENSRNOG00000057740 ENSRNOT00000091777,ENSRNOT00000086371 2 2 2 80 3 45117461 45117480 AGATGCTGATCAAGCAACAC 59 45112905 45117423 CAGACTCCAATTTACATCTGATCC 59 NA Rattus norvegicus 81 Ccdc148 ENSRNOG00000057740 ENSRNOT00000091777,ENSRNOT00000086371 3 2 2 80 3 45111153 45111171 AAGGCTGCCTTTGAAAGAC 59 45111014 45111110 ACCTAGTAACTCCACACTCC 58 NA Rattus norvegicus 81 Vom2r26 ENSRNOG00000009146 ENSRNOT00000046049 3 1 2 88 1 63568701 63568720 CATTTCTGCTTACAGGACCG 59 63559622 63568650 AAGCTGAAGGAAACGTGGA 60 NA Rattus norvegicus 81 Apc2 ENSRNOG00000033791 ENSRNOT00000086061 3 1 2 110 7 12274813 12275364 GATGATTGTGGCACTGCAG 60 12274721 12274743 TCCTGTCTTAAGTGAGTGTTCTC 60 NA Rattus norvegicus 81 Foxp4 ENSRNOG00000022804 ENSRNOT00000064229,ENSRNOT00000087107 1 2 2 156 9 15114100 15114787 GGCCAGTTTATCAAACACCTC 60 15116163 15116181 GTCGCATATGCAGATGTGC 60 NA InUTR Rattus norvegicus 81 Ero1lb ENSRNOG00000002609 ENSRNOT00000085669 1 1 2 80 17 90717306 90717874 AGTCATTAAAGGAGGAATTCCG 58 90717247 90717265 ATCTGCATTTATCGCACCC 58 NA Rattus norvegicus 81 Kcnip3 ENSRNOG00000014152 ENSRNOT00000078994,ENSRNOT00000047158 2 2 2 182 3 120076233 120076777 GGAAGCAATGAAGGCATCG 60 120032292 120076087 TCACTGTCACTGCTGTCTG 60 NA Rattus norvegicus 81 Tmc4 ENSRNOG00000059741 ENSRNOT00000085010,ENSRNOT00000080466 3 2 2 80 1 64054623 64054644 CAAACTTGTGCTCTTTGATCTG 59 64054685 64124661 AGGCCACAGAGTATCTTCC 59 NA Rattus norvegicus 81 Ntn4 ENSRNOG00000005573 ENSRNOT00000007412 1 1 2 90 7 34649185 34649203 ATGAGGACGTGAGAACAGG 59 34649258 34649278 AAGATGTGCAATGCTCTCC 58 NA Rattus norvegicus 81 Bcar1 ENSRNOG00000019253 ENSRNOT00000041815,ENSRNOT00000058891 1 2 2 80 19 43936509 43937510 ATCATTCGGTGTATGATGTTCC 59 43936450 43936470 CATCATATGTTTCCTCACGCA 59 NA Rattus norvegicus 81 Zfp839 ENSRNOG00000031661 ENSRNOT00000051685,ENSRNOT00000079048 3 2 2 81 6 135282102 135283469 CCTTCTGGTGAAGGTTGAG 58 135283512 135283532 GTCATACAGCTGTTCAAACTC 57 NA Rattus norvegicus 81 Zfp839 ENSRNOG00000031661 ENSRNOT00000051685 1 1 2 81 6 135274884 135278853 CCCTACAGAATGGTGAGCC 60 135278898 135278916 CTCAGAAGAGCTGAGGGAC 59 NA Rattus norvegicus 81 LOC102547897 ENSRNOG00000015196 ENSRNOT00000020384 2 1 1 61 17 78739912 78739930 GTGACATTGAGGACTCCTG 58 78740513 78740531 GTTGAGGGTCCCTTGAGAG 59 NA DesignNoJunction Rattus norvegicus 81 Slc44a5 ENSRNOG00000042332 ENSRNOT00000064249 3 1 2 80 2 260527626 260527645 TTAGTGATTGGGTGATTGGC 58 260527687 260531760 CTCTCCAGATCTTCACCTCC 59 NA Rattus norvegicus 81 Acly ENSRNOG00000016924 ENSRNOT00000023447,ENSRNOT00000043172,ENSRNOT00000077579 2 3 3 80 10 88410810 88413058 ATGAACTATGCACAGATCCG 58 88410749 88410767 CTTCTTGATGAGCTTCCGT 58 NA Rattus norvegicus 81 Agxt ENSRNOG00000023856 ENSRNOT00000029127,ENSRNOT00000079305 1 2 2 82 9 100286317 100287254 ACAAGGCCAAATCCAAAGTC 59 100287296 100287317 CCACAACTTGGACAAATAAGTG 58 NA Rattus norvegicus 81 Lig3 ENSRNOG00000021815 ENSRNOT00000055982,ENSRNOT00000084076 3 2 2 80 10 70153524 70154104 CAGTAGCAGAGGTGGAGAG 59 70154148 70154166 GTCTCATCAGCAGCTTTCC 59 NA Rattus norvegicus 81 Shkbp1 ENSRNOG00000020882 ENSRNOT00000028348,ENSRNOT00000084586 3 2 2 80 1 84157408 84157426 CATCCTTCAAGATCCTGGC 58 84156918 84157364 CACCATAGGGACCAATGTC 58 NA Rattus norvegicus 81 Creb3 ENSRNOG00000016452 ENSRNOT00000085311 3 1 2 80 5 59064458 59066438 CTTCCTCTCACTAAGGTGGAG 59 59066480 59066498 GCTTTCTTGAGCTGCTCTC 59 NA Rattus norvegicus 81 Alg13 ENSRNOG00000005753 ENSRNOT00000076680,ENSRNOT00000077034,ENSRNOT00000076521 3 3 4 85 X 115561442 115563049 ACGGTTCAGATACTCAAGAGTC 60 115563095 115563113 GTACTGAATGGCTCAGGCA 60 NA Rattus norvegicus 81 Man1a1 ENSRNOG00000000800 ENSRNOT00000085465 3 1 3 82 20 35260893 35263458 ATGAATCAGGACAAGGCCC 60 35260829 35260849 TCATGGGCAATGTAAACATCC 59 NA Rattus norvegicus 81 Stam ENSRNOG00000060817 ENSRNOT00000077368,ENSRNOT00000087129 3 2 2 80 17 81222924 81222943 TGAATACTGCTGAGGACTGG 59 81222985 81233697 GACAATCTTTAGGCCCTGTG 59 NA Rattus norvegicus 81 Cep295 ENSRNOG00000010999 ENSRNOT00000078372 2 1 3 81 8 13875649 13875670 AACCACATCTAGATCTTGACCT 59 13875192 13875610 GATGAAGATTCTGAGTTCTGGT 58 NA Rattus norvegicus 81 Cep295 ENSRNOG00000010999 ENSRNOT00000083011,ENSRNOT00000029634 2 2 3 80 8 13875649 13875670 AACCACATCTAGATCTTGACCT 59 13875196 13875610 AAGATTCTGAGTTCTGCTGGT 60 NA Rattus norvegicus 81 LOC100909688 ENSRNOG00000049662 ENSRNOT00000075247 1 1 2 80 2 86470236 86470256 GCGAGAAGCCTTATAAATGTG 58 86470172 86470196 CTAGCATGAAGTAGTGTCGAG 58 NA Rattus norvegicus 81 Clock ENSRNOG00000002175 ENSRNOT00000002981 1 1 3 84 14 34480765 34484605 AGTAGTCAGTTTCAGCTTTCAG 59 34484650 34484668 CTTCTATCATGCGTGTCCG 59 NA Rattus norvegicus 81 Dennd6b ENSRNOG00000029866 ENSRNOT00000051347 2 1 2 88 7 130171092 130176454 GCGCTAGAGCTAGTCTATCC 59 130170945 130170963 GAGTGGGAGTCTGGAAAGG 59 NA Rattus norvegicus 81 Dennd6b ENSRNOG00000029866 ENSRNOT00000051347 3 1 2 112 7 130171091 130176453 CGCTAGAGCTAGTCTATCCG 59 130170422 130170440 GAACTGAGTGTCTCCCAGG 59 NA Rattus norvegicus 81 Cdh5 ENSRNOG00000013324 ENSRNOT00000086995,ENSRNOT00000017983 2 2 2 80 19 1040079 1051241 CACTATGTGGGAAAGATCAAGTC 59 1040021 1040040 GATCTTGCCAGCTTGTTCTC 59 NA Rattus norvegicus 81 P2ry4 ENSRNOG00000002953 ENSRNOT00000045907 3 1 1 70 X 70428341 70428360 TCTGTCTGATGCCATCAGTC 60 70428053 70428071 CAAGGATTCTGCACTGGTC 59 NA DesignNoJunction, InUTR Rattus norvegicus 81 Pdzk1 ENSRNOG00000000096 ENSRNOT00000000107 3 1 2 85 2 198997299 198997319 GCTGATTAAAGAGGACGACAG 59 198997366 198997755 CCTGCTGTACCTCCTTGAC 60 NA Rattus norvegicus 81 RGD1566226 ENSRNOG00000026061 ENSRNOT00000089660 3 1 2 81 3 122006607 122006629 TACTACACTGTGGAAGATTCTGG 60 122001148 122006567 GATGAAAGGCTTCCCAACTG 59 NA Rattus norvegicus 81 RGD1566226 ENSRNOG00000026061 ENSRNOT00000038748 1 1 2 86 3 122001154 122057407 GTTACCTGTTGGGAAGCCT 60 122001086 122001105 GCAGTACAGAGAAACTGCAC 59 NA Rattus norvegicus 81 Slc1a7 ENSRNOG00000011644 ENSRNOT00000090817 1 1 4 82 5 127613624 127613642 ATGGTCATTGTGCTCACCT 59 127613687 127614962 CAGCAATTTAGTGCCCAGTC 60 NA Rattus norvegicus 81 Nicn1 ENSRNOG00000049083 ENSRNOT00000082452 3 1 2 82 8 117066574 117066595 GCTAATCATACTTCCACAAGGA 58 117066711 117067564 CAGAAGCAAGTGTAGGAGAG 58 NA Rattus norvegicus 81 Hnrnpa1 ENSRNOG00000036839 ENSRNOT00000055285 1 1 2 99 7 144867695 144868594 TTTGGCAATGATGGAAGCA 58 144868657 144868675 TTCCTCCTTTCATCGGTCC 59 NA Rattus norvegicus 81 Ap2m1 ENSRNOG00000001709 ENSRNOT00000058092,ENSRNOT00000088821 1 2 2 80 11 84045613 84045632 TACTTTGGCAAGATCAGCGA 60 84044727 84045572 AAAGTCCAGAATCTCGTCCAG 60 NA Rattus norvegicus 81 Mrpl37 ENSRNOG00000009078 ENSRNOT00000091165 1 1 2 85 5 126657843 126657861 GACAGACTCAGACCAGCTC 60 126650714 126657794 AACTGTAGAGGGCGTTCAC 60 NA Rattus norvegicus 81 Mrpl37 ENSRNOG00000009078 ENSRNOT00000091165 2 1 2 90 5 126657846 126657866 GTATGGACAGACTCAGACCAG 60 126650714 126657794 AACTGTAGAGGGCGTTCAC 60 NA Rattus norvegicus 81 AABR07002900.1 ENSRNOG00000047364 ENSRNOT00000075116 2 1 1 60 1 88621385 88621404 TGTACAGACTGACCATGACG 60 88621819 88621840 CCCAAGCAGTATAAACAGTAGG 59 NA DesignNoJunction Rattus norvegicus 81 Tpst1 ENSRNOG00000000900 ENSRNOT00000084968,ENSRNOT00000001200,ENSRNOT00000065868 2 3 3 80 12 30069029 30069048 TATGATCCATACGCCAATCC 57 30051547 30068986 TCCTTTATGGACCCTCCTG 58 NA Rattus norvegicus 81 Ryr3 ENSRNOG00000006645 ENSRNOT00000049582 3 1 2 80 3 104168274 104176575 AAGCCATGCAAGTAAAGTCTG 59 104168214 104168235 TCTGGATGGAATACAAGTCTCC 59 NA Rattus norvegicus 81 Bbip1 ENSRNOG00000047019 ENSRNOT00000074341 1 1 1 60 1 274650330 274650348 TCGATGTTCCGAGAAGTCC 59 274649615 274649635 TTGTGGTTACATCTTCCACAG 58 NA DesignNoJunction Rattus norvegicus 81 Cd160 ENSRNOG00000000097 ENSRNOT00000000109 2 1 2 80 2 198936175 198936193 CTCTCAGTTCAGGCTTCCT 59 198935135 198936133 GTTTGTACTGTGCTTGAAAGG 58 NA Rattus norvegicus 81 Setbp1 ENSRNOG00000016208 ENSRNOT00000021717 2 1 1 62 18 75203861 75203879 GAGTCCTCGATGACTCCAG 59 75127335 75127353 GTGTACTGTCGTCTGGTCC 60 NA DesignNoJunction Rattus norvegicus 81 Ddx3x ENSRNOG00000023383 ENSRNOT00000091448 1 1 2 80 X 10405858 10405877 CTTGTTAGTAGCCACTCCAG 58 10405382 10405816 ACCAGGTATTTGCAGAAGTC 58 NA Rattus norvegicus 81 Myh1 ENSRNOG00000049695 ENSRNOT00000045718,ENSRNOT00000082871 2 2 6 127 10 53800352 53800373 AGTAAAGGAACTCACCTACCAG 59 53800563 53801357 ATTGTTCCTCAGCCTCCTC 59 NA Rattus norvegicus 81 Slc16a14 ENSRNOG00000017072 ENSRNOT00000089889,ENSRNOT00000064875 1 2 2 129 9 92511320 92511338 TATTTCTCCCTCATGCCCG 59 92507139 92511227 AGATCCATCCTGCGAATGG 60 NA Rattus norvegicus 81 Slc16a14 ENSRNOG00000017072 ENSRNOT00000089889,ENSRNOT00000064875 3 2 2 137 9 92511327 92511346 CTAGCGGGTATTTCTCCCTC 60 92507139 92511227 AGATCCATCCTGCGAATGG 60 NA Rattus norvegicus 81 Aldh1l1 ENSRNOG00000047023 ENSRNOT00000085966 2 1 2 81 4 123519070 123519479 CACATCTGTTTCTGCTGGG 59 123518675 123518693 GTGGTCCTCTACGTCTGTG 60 NA Rattus norvegicus 81 Adora1 ENSRNOG00000003442 ENSRNOT00000004602,ENSRNOT00000078993 1 2 2 109 13 51044162 51075416 CCTCTCCGGTACAAGACAG 59 51044071 51044089 TTGTTCCAGCCAAACATGG 59 NA Rattus norvegicus 81 Cyb5rl ENSRNOG00000009148 ENSRNOT00000036072,ENSRNOT00000012201 1 2 2 80 5 126671251 126671269 CGGTTTACACTACCTGGGA 59 126671310 126674108 TAAGTCATCTACTACACCTCGT 58 NA Rattus norvegicus 81 Sqstm1 ENSRNOG00000003147 ENSRNOT00000059255 3 1 2 90 10 35712039 35712057 CTGCTCCATCAGAGGATCC 59 35707559 35711985 TCAACCTCGATGCCTAGAG 59 NA Rattus norvegicus 81 Kcnq3 ENSRNOG00000005206 ENSRNOT00000074573 1 1 2 80 7 107008870 107008890 CCAAACTTTGATCTATGACGC 58 106981199 107008830 AACCAGTAGTAAGTGACAAGC 58 NA Rattus norvegicus 81 Ap4s1 ENSRNOG00000005765 ENSRNOT00000007887 3 1 2 86 6 72489146 72496357 GAATACTTCAGCAGAGTGAGTG 59 72502370 72502391 GCCATTTAACACCATCTCATCC 60 NA Rattus norvegicus 81 Lnx1 ENSRNOG00000002272 ENSRNOT00000082183 2 1 2 147 14 36071656 36118608 TACTCGGAACTCTGCAAAGG 60 36118717 36118736 TTAAAGAGATGGTGGCAGCA 60 NA Rattus norvegicus 81 Lnx1 ENSRNOG00000002272 ENSRNOT00000082183 3 1 2 149 14 36071656 36118608 TACTCGGAACTCTGCAAAGG 60 36118718 36118738 CATTAAAGAGATGGTGGCAGC 60 NA Rattus norvegicus 81 Slco6c1 ENSRNOG00000013792 ENSRNOT00000077596,ENSRNOT00000077480,ENSRNOT00000018503,ENSRNOT00000081815 1 4 4 80 9 104698718 104700324 TCGGTCTTAATTCATGGTGC 58 104698657 104698680 CTTTGACAGAGTAAGTAGACTGTG 59 NA Rattus norvegicus 81 Cacna2d2 ENSRNOG00000015835 ENSRNOT00000021218 3 1 2 112 8 116273538 116273557 GGTGCCTATAAGGAGTACCA 58 116274206 116275428 TGATTGGCAACTTGACCTG 58 NA Rattus norvegicus 81 Abracl ENSRNOG00000051450 ENSRNOT00000084870 3 1 1 60 1 13171421 13171441 GTGGAGGAAATTCATCGTCTG 59 13166110 13166130 CAAACTTCACACTCAGTTTCC 58 NA DesignNoJunction Rattus norvegicus 81 Dcun1d4 ENSRNOG00000002152 ENSRNOT00000065458 1 1 2 80 14 37262076 37284501 TGCAGCTGTCAACTTTCAG 59 37262014 37262032 AGCTTGTTAAGGGTGTGGT 59 NA Rattus norvegicus 81 Sqrdl ENSRNOG00000000172 ENSRNOT00000089204 3 1 2 84 3 114921002 114921022 GATTCAAGATAGAGTGGCGGA 60 114921066 114921622 TATTGAAACCCTGTGGGTCTC 60 NA Rattus norvegicus 81 Gabra5 ENSRNOG00000010803 ENSRNOT00000083894,ENSRNOT00000014573 1 2 2 80 1 112863306 112863325 CTCCAGACTCAACCAGTACC 60 112859816 112863266 ATTGTATATTCACCTGTGCTGG 59 NA Rattus norvegicus 81 Carm1 ENSRNOG00000031129 ENSRNOT00000041577 2 1 2 80 8 22620634 22621128 ACCTGATTCCCTTAGGCTC 59 22621172 22621190 TGAACTGGTTGTTGACTGC 59 NA Rattus norvegicus 81 Smg8 ENSRNOG00000005769 ENSRNOT00000008107 3 1 1 62 10 74386488 74386509 CTGTGTACACAAATTTCACTCC 58 74384385 74384403 GGGTTCCTATCTGCCTCTG 59 NA DesignNoJunction Rattus norvegicus 81 Gtf2ird1 ENSRNOG00000001478 ENSRNOT00000079392,ENSRNOT00000087656,ENSRNOT00000002010 3 3 3 143 12 25363366 25366492 CAATGAGAAATACGGTGAGGC 60 25366597 25366615 TGGATGTCGTAGGTGTTGG 59 NA Rattus norvegicus 81 Ncoa4 ENSRNOG00000019768 ENSRNOT00000066062,ENSRNOT00000026803 3 2 2 80 16 8318690 8318709 CTCCATACGTACCCAGTACC 59 8318751 8320048 TTCTGGCAGAAGTCTGACTG 60 NA Rattus norvegicus 81 Ddx59 ENSRNOG00000042451 ENSRNOT00000042846 1 1 2 80 13 53304200 53304219 ATGAAGACAGTGCTTCTCGT 60 53304260 53309105 TATGACAACCTTCACATGCTG 59 NA Rattus norvegicus 81 Ccdc51 ENSRNOG00000020688 ENSRNOT00000077228 2 1 2 85 8 117812407 117827472 AGTTTCAACTCTTGCGATGAC 59 117827517 117827537 TTCTCCATACCAGTCTATGGG 59 NA Rattus norvegicus 81 Col6a3 ENSRNOG00000019648 ENSRNOT00000077924,ENSRNOT00000081301,ENSRNOT00000026707 2 3 5 81 9 97989254 97989273 CTAGTGGCTGTCTTTAGCCT 59 97975848 97989212 TCTTGTTGACTTCCATGACTG 58 NA Rattus norvegicus 81 Dsg1 ENSRNOG00000016853 ENSRNOT00000061344,ENSRNOT00000038635 3 2 3 80 18 12032959 12032978 TCCAGAATGTTCTGATGGAG 57 12033019 12033405 ATGGTGGTTATACCATCATGG 58 NA Rattus norvegicus 81 Ube2i ENSRNOG00000017907 ENSRNOT00000024406 2 1 1 60 10 14628981 14629001 AAGATGACTATCCGTCCTCAC 59 14625078 14625097 TTTGGATGAAACAGTGGTGG 59 NA DesignNoJunction Rattus norvegicus 81 Glrx3 ENSRNOG00000016227 ENSRNOT00000022406,ENSRNOT00000083316 2 2 2 80 1 209792224 209792439 GAGGACTTGACATAATTAAGGAGC 59 209792477 209792496 TTTCCTCTAACTTGGGTGCT 59 NA Rattus norvegicus 81 Glrx3 ENSRNOG00000016227 ENSRNOT00000022406,ENSRNOT00000083316 3 2 2 80 1 209778482 209785728 TTCATTTGTGAAGCTGGAAGC 60 209785770 209785788 AACAGGAAGGTGGGAACAG 60 NA Rattus norvegicus 81 RGD1307947 ENSRNOG00000006973 ENSRNOT00000036141,ENSRNOT00000091319,ENSRNOT00000083347 1 3 3 80 7 40306427 40308078 GACGGCTGTTTAATTAAGGTCC 60 40306368 40306388 TGGTTTGGAGTTCATGTAGGT 59 NA Rattus norvegicus 81 Igf2 ENSRNOG00000020369 ENSRNOT00000050760,ENSRNOT00000080246,ENSRNOT00000073850,ENSRNOT00000089171 3 4 4 107 1 215831593 215832828 CTTCTACTTCAGCAGGCCT 59 215831504 215831522 GCACAGTATGTCTCCAGGA 59 NA Rattus norvegicus 81 RGD1305298 ENSRNOG00000007184 ENSRNOT00000009444,ENSRNOT00000089238 3 2 3 86 6 135025758 135026358 GCCTTCAGATCAACTCCAG 58 135024799 135024819 CTGAGTCTCCATCATAAGGGT 59 NA Rattus norvegicus 81 Clec12a ENSRNOG00000054860 ENSRNOT00000087113 3 1 1 60 4 163112351 163112371 GAAAGAAGAAAGCCAGAAGTC 57 163120401 163120419 ATAGGAACCAGCAGAAGGT 58 NA DesignNoJunction Rattus norvegicus 81 Rcbtb1 ENSRNOG00000021712 ENSRNOT00000081373 1 1 2 80 15 39658029 39658047 ATCAAGCGAGGAATCACTG 58 39658089 39669074 AGTACTGTAATTCTCTGCGTC 58 NA Rattus norvegicus 81 Gpam ENSRNOG00000015124 ENSRNOT00000083215,ENSRNOT00000047903,ENSRNOT00000092170 1 3 3 80 1 275866775 275866795 CTCTTCAACAGCTTCTTCTGG 59 275866166 275866734 CAGATTCGTCTCAGTTGCAG 59 NA Rattus norvegicus 81 Myo5a ENSRNOG00000058866 ENSRNOT00000091789 2 1 3 80 8 82124454 82124475 GGAATTATATGCAGATGACCCT 58 82124513 82125911 TGTTCCATCAGATCAATCATCC 58 NA Rattus norvegicus 81 Myo5a ENSRNOG00000058866 ENSRNOT00000082288 1 1 3 80 8 82037991 82038979 ACTAGAAAGCAAATTTGCCC 57 82039019 82039040 TTATAGTCCTTGAGCAACTCAG 58 NA Rattus norvegicus 81 Myo5a ENSRNOG00000058866 ENSRNOT00000082288 3 1 3 80 8 82037979 82038430 TAGTTCCAGAGAACTAGAAAGC 57 82039010 82039028 AGCAACTCAGCTGATTTCC 58 NA Rattus norvegicus 81 Ttll10 ENSRNOG00000020132 ENSRNOT00000064207 2 1 3 97 5 173483480 173484729 TCTGAACAGCAGACACAGAG 60 173483402 173483421 GTAAGGGCATCTTTGCATCC 59 NA Rattus norvegicus 81 LOC100912262 ENSRNOG00000050193 ENSRNOT00000085696 2 1 2 80 12 29071170 29071190 CGGATGGTTATCATCAACCAG 59 29071906 29073004 GTTAGAGTCGTCCTCATCTGG 60 NA Rattus norvegicus 81 Tmem9 ENSRNOG00000010204 ENSRNOT00000013738,ENSRNOT00000086004 1 2 2 80 13 52860361 52860380 CATGATGTGGAAGCCTACTG 59 52860421 52863396 GACGATAATGACCTTGATGGT 58 NA Rattus norvegicus 81 Wars ENSRNOG00000004359 ENSRNOT00000006128,ENSRNOT00000050350 2 2 3 84 6 132773943 132773961 CTGTGAAGTAGACGTGTCC 58 132772510 132773898 AGTGTAATCCTTTCTGATCTGC 58 NA Rattus norvegicus 81 Ifi44 ENSRNOG00000022218 ENSRNOT00000029990,ENSRNOT00000084873 3 2 2 80 2 256906228 256911026 AGATACCAGTTCGATTTCAGG 58 256906168 256906187 AATTCTGTCCTTCAGCAGTG 58 NA Rattus norvegicus 81 Fhod3 ENSRNOG00000027230 ENSRNOT00000068139 2 1 2 80 18 17324790 17326198 GAGGATGACACTGAGTCTGG 60 17326241 17326259 CTCAGCATAGCTCAGACCC 60 NA Rattus norvegicus 81 Dysf ENSRNOG00000032788 ENSRNOT00000085765,ENSRNOT00000064536 1 2 2 80 4 115791245 115791263 GAACCTCTATGGCAGTCCC 60 115791307 115791655 ACACCTTCTCCCTTTCCTG 59 NA Rattus norvegicus 81 Cdc6 ENSRNOG00000027787 ENSRNOT00000081424,ENSRNOT00000038228 2 2 2 80 10 86828577 86831056 CACTCTCCGAATGTAAATCACC 59 86831094 86831115 CCGAAATGACTTGGGATATGTG 60 NA Rattus norvegicus 81 Gusb ENSRNOG00000000913 ENSRNOT00000001215 1 1 2 80 12 30207487 30210423 CGGATATTACTTCAAGACGCTG 59 30210462 30210482 CTGGTATTGCTCACAAAGGTC 59 NA Rattus norvegicus 81 Acsl1 ENSRNOG00000010633 ENSRNOT00000014235,ENSRNOT00000089501 1 2 2 80 16 48940073 48940092 GTGGAGATCCTACCTTCCTG 59 48939920 48940033 ATTGATATCCTTGTTCCTGCAC 59 NA Rattus norvegicus 81 Slc4a10 ENSRNOG00000005307 ENSRNOT00000082775,ENSRNOT00000087711,ENSRNOT00000068238,ENSRNOT00000064344,ENSRNOT00000044638,ENSRNOT00000007218 1 6 7 80 3 48276243 48276264 GAACAAAGTATGCTAGCCATGG 60 48276305 48279006 CACAGATGGGTCGTCTCTG 60 NA Rattus norvegicus 81 Esr1 ENSRNOG00000019358 ENSRNOT00000078494 3 1 6 80 1 41555594 41561428 TTCCAGCCTAAGGAATCAAGG 60 41561470 41561488 AATCGACTTGACGTAGCCA 59 NA Rattus norvegicus 81 Exoc2 ENSRNOG00000060266 ENSRNOT00000092101,ENSRNOT00000090706,ENSRNOT00000077110 3 3 4 82 17 34832492 34832510 GTCTCTGAAGAGCTGAGCC 60 34832555 34835976 CAGATTTCAAGTCTGGCCTG 59 NA Rattus norvegicus 81 Atg4d ENSRNOG00000047625 ENSRNOT00000075174 3 1 2 82 8 22294801 22297328 GACTGCACAGTGTACAAGG 59 22297373 22297392 AGGATGACAACAGACTTCCA 59 NA Rattus norvegicus 81 LOC100912481 ENSRNOG00000046950 ENSRNOT00000057382 1 1 2 81 4 24612227 24617020 CGTCCACGGATTATAGTACCT 59 24617186 24617204 TATCCTTGAGTTGGCTGGG 59 NA Rattus norvegicus 81 LOC100912481 ENSRNOG00000046950 ENSRNOT00000057382 2 1 2 81 4 24619319 24619708 CTCCCACTGTAGAAGGGAC 59 24623370 24623388 CCATATCCTTGGACAGGCT 59 NA Rattus norvegicus 81 Ptprc ENSRNOG00000000655 ENSRNOT00000029865 1 1 5 80 13 55114472 55120562 TATCTTCCAGGTGCCAACC 59 55114410 55114429 TATTTCTGTGCTTGTGGTGG 59 NA Rattus norvegicus 81 Aifm3 ENSRNOG00000037957 ENSRNOT00000086117 3 1 2 118 11 87375984 87376002 CAGACAGAGGTGTCAGAGC 60 87376187 87376903 TGTTGGTCTGCATCATCGA 59 NA Rattus norvegicus 81 Aifm3 ENSRNOG00000037957 ENSRNOT00000040978 3 1 2 81 11 87373773 87373793 TGCTTCAATATTGGAACTGGG 59 87373834 87373945 CCTTCTCAATCTTCACCTGGA 60 NA Rattus norvegicus 81 LOC500331 ENSRNOG00000030522 ENSRNOT00000090431,ENSRNOT00000049620,ENSRNOT00000043078 3 3 3 87 4 162086884 162087877 TGCATATAACAACTTGGTTCCC 59 162087924 162087943 TATGTAGTCCTTGCCACTGC 60 NA Rattus norvegicus 81 Galk2 ENSRNOG00000009289 ENSRNOT00000083356 1 1 3 93 3 118137360 118152170 TATGACAGATTGCTGAAGCT 57 118152225 118152244 TTATGTTCACTCTTCCTGGG 57 NA Rattus norvegicus 81 Guca1b ENSRNOG00000015623 ENSRNOT00000077318 3 1 2 80 9 15624536 15625125 GAACAATTAACTGGAGTGATGG 58 15623982 15624000 CTCCATTCTCATCCACCAG 57 NA Rattus norvegicus 81 AABR07000534.1 ENSRNOG00000048762 ENSRNOT00000072759 1 1 1 60 1 16989125 16989144 CCATTAGCCAGACTAACCAG 58 16987927 16987947 ACAGATCTTTCACTTGCTTGG 59 NA DesignNoJunction Rattus norvegicus 81 Prom1 ENSRNOG00000003098 ENSRNOT00000004231,ENSRNOT00000082592,ENSRNOT00000084322 2 3 5 110 14 71542388 71542406 ATCTTCCTCAACGTGGTCC 59 71572868 71579460 TTCATAGATGGCGACCTCC 59 NA Rattus norvegicus 81 Bsn ENSRNOG00000030714 ENSRNOT00000042528,ENSRNOT00000082113 1 2 2 95 8 116885170 116887269 GACTAGGTAGCCAGGTGTC 59 116885093 116885111 GAAGGTGAGCTTCCTCTGG 60 NA Rattus norvegicus 81 Siglec10 ENSRNOG00000037339 ENSRNOT00000081922,ENSRNOT00000015941 3 2 2 90 1 98517552 98517666 TCGTGATCATCATGAAGACC 58 98517481 98517499 TAATCCAGGATTGTGCTGC 58 NA Rattus norvegicus 81 Trmu ENSRNOG00000016465 ENSRNOT00000022511,ENSRNOT00000065283 1 2 2 80 7 126761648 126765315 CTGTGGACAATCTTGGAGC 59 126765358 126765377 GCTCAAAGACTTCCTCATCC 58 NA Rattus norvegicus 81 Spidr ENSRNOG00000037851 ENSRNOT00000089517,ENSRNOT00000057502 2 2 2 80 11 89034700 89034718 GAAGGAGACACCATTTCCA 57 89034551 89034658 ACCATGTTCATTAGTCTGGAG 58 NA Rattus norvegicus 81 Ift46 ENSRNOG00000013919 ENSRNOT00000087922,ENSRNOT00000019011 1 2 2 88 8 49096435 49096726 CATGATCTGTGCCATCCTG 58 49096775 49096796 TCTTGAATTCTGAGTAGAGGGA 58 NA Rattus norvegicus 81 Ankib1 ENSRNOG00000005502 ENSRNOT00000067954 2 1 3 81 4 27537849 27537867 CTTATTGTGGAGACCGCAG 58 27537911 27538380 ATACAGAGAAACCGTGAGCT 59 NA Rattus norvegicus 81 Ankib1 ENSRNOG00000005502 ENSRNOT00000007940 1 1 3 80 4 27585341 27592363 GCATCACCTGAGTATCGGA 59 27592407 27592425 GTCCGTAGGGTTACTGAGC 60 NA Rattus norvegicus 81 Prmt3 ENSRNOG00000014829 ENSRNOT00000020853,ENSRNOT00000079655 2 2 2 82 1 105142216 105154152 ATTATATCAGAGTGGATGGGCT 59 105154194 105154213 GCCAAGTATTTGCTCTTTGC 58 NA Rattus norvegicus 81 Csmd2 ENSRNOG00000007057 ENSRNOT00000078588,ENSRNOT00000036029 1 2 2 80 5 146661880 146661902 GATACCATCGTGTATTTCCACAG 59 146661942 146667897 TTGGAGTTCGTAGGCTTGG 60 NA Rattus norvegicus 81 RGD1562608 ENSRNOG00000029466 ENSRNOT00000078870 2 1 2 60 18 17556857 17556878 CTTTCCTAAACCTGGAAGTGAC 59 17606013 17606032 CCTCTTCTGAAGACTGAGTG 57 NA DesignNoJunction Rattus norvegicus 81 Sbno1 ENSRNOG00000001064 ENSRNOT00000057902,ENSRNOT00000088787 1 2 3 80 12 37625151 37625170 CCCAAGTAACAACAGTTCAC 57 37625210 37626997 CGAGTAATTTCTTCACCTTTCC 58 NA Rattus norvegicus 81 Gltscr1l ENSRNOG00000016229 ENSRNOT00000021762,ENSRNOT00000091809 1 2 2 94 9 16465605 16466089 TCGATCTTATTGGAGACCCAC 59 16466224 16466242 AGAATACCCTGCGTTCGTC 60 NA Rattus norvegicus 81 Tp53 ENSRNOG00000010756 ENSRNOT00000046490,ENSRNOT00000085115 2 2 5 89 10 56195687 56195705 GTACATGTGCAACAGCTCC 59 56195757 56196087 AGAAGATTCCCACTGGAGTC 59 NA Rattus norvegicus 81 Ccdc39 ENSRNOG00000011440 ENSRNOT00000065469 2 1 2 154 2 120313406 120316294 GATGGATGGCCAATTAGCA 58 120311266 120311286 ACTCCCTTGCTTTGTAAAGAG 58 NA Rattus norvegicus 81 Dnaja3 ENSRNOG00000003855 ENSRNOT00000005479 2 1 3 80 10 11075536 11075557 TTTGGAGAGTTCTCATCTTCTC 58 11071813 11075497 CCCTGTATTGATGGTTTCCTC 59 NA Rattus norvegicus 81 Cdc14b ENSRNOG00000018999 ENSRNOT00000033017 2 1 2 80 17 1723454 1723472 CACAAGGAGACAGACTTCG 58 1715687 1723412 ACTGAAGAATTACTGTGAGGG 58 NA Rattus norvegicus 81 Rilpl1 ENSRNOG00000001055 ENSRNOT00000001401 1 1 2 85 12 37519722 37527652 GATCAAGCGACTGTTTAGCT 58 37527700 37527718 CAAAGGACTCGTGGATGTG 59 NA Rattus norvegicus 81 Gtf2a2 ENSRNOG00000056701 ENSRNOT00000084148,ENSRNOT00000085496 3 2 2 87 8 76426395 76427595 GAGCTCATACAGTCTCAACAG 58 76427641 76427662 GAGCCAATGCTGAATTTATAGC 58 NA Rattus norvegicus 81 Hsd3b5 ENSRNOG00000019417 ENSRNOT00000026290,ENSRNOT00000079754 1 2 2 141 2 200619950 200692119 AGAGGAACTGTCCAAGCTG 59 200619827 200619845 GAAGCCTGCGATATCAAGG 59 NA Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000088389,ENSRNOT00000086685,ENSRNOT00000090697,ENSRNOT00000082455,ENSRNOT00000084099,ENSRNOT00000083308,ENSRNOT00000088253,ENSRNOT00000045144,ENSRNOT00000051837 2 9 18 60 1 43508749 43508768 TGGATCGAACTAACCACCAG 60 43527519 43527537 AGTTAGGGCAATGGAGCAG 60 NA DesignNoJunction Rattus norvegicus 81 Oprm1 ENSRNOG00000018191 ENSRNOT00000045144 2 1 18 103 1 43454882 43475249 GTCCAATGCTTGCATGGAG 60 43475316 43475334 AGGGATCCAGAGGCTAGAG 60 NA InUTR Rattus norvegicus 81 Col25a1 ENSRNOG00000050706 ENSRNOT00000071463 3 1 3 118 2 235691789 235691809 GTGCAGATGGTCCTATAGGAC 60 235703211 235704473 TCCATCTTTGCCAGGTAGC 60 NA Rattus norvegicus 81 Lama2 ENSRNOG00000011134 ENSRNOT00000079138,ENSRNOT00000014917 3 2 2 80 1 19090290 19092968 TCACTGGAGAATGTTTACACAG 58 19093009 19093027 CGTTCCGACATCAATGGAC 59 NA Rattus norvegicus 81 Kcnt2 ENSRNOG00000013312 ENSRNOT00000017884 1 1 2 80 13 57229170 57241251 AGGGAAATGATTGGTCTCAC 58 57243860 57243878 TTATCAATGCCACCGAGAC 58 NA Rattus norvegicus 81 Mrpl14 ENSRNOG00000019734 ENSRNOT00000026716 3 1 2 139 9 17689305 17693097 CTCATGCTAGCAGGTTTGC 59 17688191 17688209 GTCATCTTCTGGATTGCGC 59 NA InUTR Rattus norvegicus 81 Kncn ENSRNOG00000037618 ENSRNOT00000066161 1 1 2 80 5 134738190 134738997 TAGATGGGAATGGGTGCTC 59 134739041 134739059 ATCTTCCCTCTCCATGGTC 58 NA Rattus norvegicus 81 Crebl2 ENSRNOG00000007115 ENSRNOT00000086719,ENSRNOT00000009324 1 2 2 80 4 168616029 168616048 AGTACTTGGAGGAGTTGGTG 59 168616090 168618070 ACCACTGCTTGTACATTTCC 59 NA Rattus norvegicus 81 Gtpbp2 ENSRNOG00000019332 ENSRNOT00000026195 2 1 2 188 9 17206856 17206874 AGTATCGGAACTGTTCGGC 60 17204706 17206705 TTTCCATCTTCAGCCTCTGG 60 NA Rattus norvegicus 81 Slc6a7 ENSRNOG00000018644 ENSRNOT00000086464,ENSRNOT00000085841,ENSRNOT00000091220,ENSRNOT00000025209 1 4 4 113 18 56316004 56325240 GTACTGGAGCCGATATGTCC 60 56315910 56315928 AGAAACACGATGACCCAGG 60 NA Rattus norvegicus 81 Katnb1 ENSRNOG00000014626 ENSRNOT00000019770,ENSRNOT00000087100 1 2 2 80 19 10341168 10341412 CAGGAGATATCAAGACATCGG 58 10341108 10341129 TGACAATATTCAGAAGGTCCAC 58 NA Rattus norvegicus 81 Zfp318 ENSRNOG00000018741 ENSRNOT00000025335 2 1 2 84 9 16953354 16953372 AAGACTGCAACACCATCTG 58 16952830 16953306 TAGGGATCCAGTGTCTGTG 58 NA Rattus norvegicus 81 Mark3 ENSRNOG00000010330 ENSRNOT00000014395,ENSRNOT00000088784 2 2 3 80 6 136119893 136127002 TAAACTCACCAGAAGACTTCCA 59 136128838 136128857 TGTTCCGAAGATACATTGCG 59 NA Rattus norvegicus 81 Grm3 ENSRNOG00000005519 ENSRNOT00000089747 1 1 2 82 4 21541926 21551027 CTATTCTCAGTATCCTCCTTCCA 59 21551069 21551087 CTTGTCTCTTGGTGCTGTG 59 NA Rattus norvegicus 81 Grn ENSRNOG00000021031 ENSRNOT00000028557,ENSRNOT00000040472 3 2 2 80 10 90379861 90380003 TCTCTGAGGGTGTATCTTGTG 59 90380045 90380063 AGCAGGATTTCCCATCCAC 60 NA Rattus norvegicus 81 Ncf2 ENSRNOG00000028016 ENSRNOT00000066331 3 1 4 80 13 70240855 70245791 AGCATCTGGAAGAGGTGTC 59 70245834 70245853 TCCTTCCTCAAACCACAGAG 59 NA Rattus norvegicus 81 Wdr60 ENSRNOG00000004520 ENSRNOT00000006144 3 1 2 83 6 144118111 144123590 CCTGGGAAGAGAAGAACCA 59 144117049 144117067 GGGACTACCTGATTGTGCA 59 NA Rattus norvegicus 81 LOC100910772 ENSRNOG00000050015 ENSRNOT00000075236 2 1 1 60 1 91072746 91072765 TGTACAGACTGACCATGACG 60 91072310 91072331 CCCAAGCAGTATAAACAGTAGG 59 NA DesignNoJunction Rattus norvegicus 81 Ptpdc1 ENSRNOG00000026564 ENSRNOT00000060550,ENSRNOT00000089140 1 2 2 80 17 16367075 16367093 TAAGTACGAGAACCCAGCC 59 16367136 16369072 ATATTGTCAGTGACCCAGGA 58 NA Rattus norvegicus 81 Lrp6 ENSRNOG00000006338 ENSRNOT00000066575,ENSRNOT00000082102 2 2 2 80 4 168221645 168230126 ACCTGTAGTGCTCCTACCA 60 168221583 168221604 ACTCTGTTGTTCATCAATCACC 59 NA Rattus norvegicus 81 Lrp6 ENSRNOG00000006338 ENSRNOT00000066575,ENSRNOT00000082102 3 2 2 80 4 168235824 168235845 AGAGGGAGGTCATAATAGACCA 60 168235314 168235786 GGTTAGAACCAATGACTCTGTG 59 NA Rattus norvegicus 81 Il1a ENSRNOG00000004575 ENSRNOT00000006113,ENSRNOT00000006126 3 2 3 81 3 121835299 121835321 TGCTATAGGGAAACGGAGTC 59 121831730 121831748 GAAGTGAGCCATAGCTTGC 59 NA Rattus norvegicus 81 Tmem69 ENSRNOG00000029152 ENSRNOT00000050434 1 1 1 82 5 135396655 135396675 AGAATGCTTCACTTCATCCAG 58 135395741 135395759 CTGGCTCTGAGTCTCACTG 60 NA DesignNoJunction, InUTR Rattus norvegicus 81 Ndufa8 ENSRNOG00000005668 ENSRNOT00000084069 1 1 2 80 3 15374118 15379231 AGTAGAGGAGGTGAAAGTCAG 59 15374058 15374079 TTATTGGTCTTATCGCACTGAG 58 NA Rattus norvegicus 81 Morc3 ENSRNOG00000026236 ENSRNOT00000076473,ENSRNOT00000064751 1 2 3 80 11 34081105 34081126 TCCAGAAGAACCTGAAGATGAG 60 34081165 34083829 CTGAATTTCTCCTTGCTGGTC 59 NA Rattus norvegicus 81 Morc3 ENSRNOG00000026236 ENSRNOT00000076473,ENSRNOT00000064751 3 2 3 80 11 34080916 34080937 AAAGTTACCAGACGGGATAGAC 60 34080976 34081101 TCACAATTTCTGAACTGTGGG 59 NA Rattus norvegicus 81 Fam170b ENSRNOG00000020077 ENSRNOT00000027193 2 1 1 96 16 9074178 9074196 GACACCAATCAATGGGACG 59 9075381 9075399 CTCATTCCTCCTCATGGTC 57 NA DesignNoJunction Rattus norvegicus 81 Ppfia1 ENSRNOG00000020857 ENSRNOT00000039677 2 1 2 131 1 217648633 217648651 AGACCAAAGGACATCCGTG 60 217645487 217648539 GTAGTGTGGGTAAACGTCCA 60 NA Rattus norvegicus 81 Tsen15 ENSRNOG00000002352 ENSRNOT00000065521 3 1 2 106 13 69777982 69778001 AACTACAGCTCATCTGCCTC 60 69765630 69777919 GAGAAATATTCTGTTATGGCTGAGG 60 NA Rattus norvegicus 81 Scap ENSRNOG00000020853 ENSRNOT00000028295,ENSRNOT00000090238 2 2 2 80 8 118621892 118621911 AGAACGTAGCAACTGAACTG 58 118621953 118622584 CAAAGAGGCAGAACTCTTGG 59 NA Rattus norvegicus 81 Kif21a ENSRNOG00000014844 ENSRNOT00000038946,ENSRNOT00000044092,ENSRNOT00000066528,ENSRNOT00000045553,ENSRNOT00000046744,ENSRNOT00000055742 1 6 6 80 7 132140938 132140957 ATTCACGAAGATTCGACTGG 58 132140133 132140896 CTGCATCATCTCTGGTTCTG 59 NA Rattus norvegicus 81 Tbx20 ENSRNOG00000016181 ENSRNOT00000082744 3 1 2 84 8 25853523 25880797 GACATCGAGAGGGAGAGTG 59 25853457 25853476 CATCCTCCTCTCCATAGGTG 59 NA Rattus norvegicus 81 Rreb1 ENSRNOG00000015701 ENSRNOT00000079298 3 1 2 91 17 27544217 27550116 TGATAGCACAGACAGCCAG 60 27544144 27544162 ATGTTGGCTGCTCTTTGTC 59 NA Rattus norvegicus 81 St3gal5 ENSRNOG00000010284 ENSRNOT00000050249,ENSRNOT00000078793 2 2 2 81 4 99976012 99979933 ATCCTCAAGTGCATGTTGG 58 99979977 99979996 TGTCACATTCTTCAGCAGTG 59 NA Rattus norvegicus 81 Rgs8 ENSRNOG00000002369 ENSRNOT00000083366 1 1 3 80 13 71107993 71108013 CTCCTTAACCAGAAGCATCTC 58 71108055 71112435 CCTTTGTTCTGTTGTTGGC 58 NA Rattus norvegicus 81 Abcb8 ENSRNOG00000008557 ENSRNOT00000089817 2 1 2 82 4 7301400 7303968 GTACAGAGGTCTATGGCCA 58 7301054 7301072 TACTCAAAGACTCGGGCTC 59 NA Rattus norvegicus 81 Zfp317 ENSRNOG00000006684 ENSRNOT00000034254,ENSRNOT00000078593 3 2 2 83 8 19888890 19890688 GTCCTTCTCCAGATTGGGA 58 19890735 19890753 CATCAGATGCTTCCTTCCC 58 NA Rattus norvegicus 81 Tsc22d2 ENSRNOG00000038044 ENSRNOT00000088139 1 1 2 93 2 148609968 148652037 ATGAAGACAGTGCATCTGG 58 148652722 148652741 ACTGCATACATCAAATGGCT 58 NA Rattus norvegicus 81 AABR07014089.1 ENSRNOG00000045591 ENSRNOT00000041506 3 1 2 151 14 820035 820056 AGTGATGTTGGTTACAGTGGA 59 820173 820191 ATGGAGGATGGAACCTGAG 59 NA Rattus norvegicus 81 Zeb2 ENSRNOG00000004677 ENSRNOT00000085801,ENSRNOT00000006350 1 2 3 82 3 29868403 29868424 CATGTGACTTATGTGACAAGAC 58 29863040 29868360 GTGTGGTCTCTTTCCTGTG 58 NA Rattus norvegicus 81 Ldb3 ENSRNOG00000059166 ENSRNOT00000085414,ENSRNOT00000083623 1 2 3 80 16 10889647 10895050 CTGTGAGAAAGACTACATCAACC 59 10889589 10889609 ATAAACTTGTCACCAGCTTCC 59 NA Rattus norvegicus 81 Cbx5 ENSRNOG00000036841 ENSRNOT00000089024,ENSRNOT00000055289 2 2 2 83 7 144826212 144826232 AGGAAACAAGAGGAAATCCAG 58 144821383 144826168 GCGATATCATTGCTTTGCTC 58 NA Rattus norvegicus 81 Ttc26 ENSRNOG00000027617 ENSRNOT00000031193,ENSRNOT00000078066 3 2 2 80 4 66144874 66146419 GAGAACCCAAAGAGACCCT 59 66146459 66146481 TCCTGATGATATACTCCACTTGG 59 NA Rattus norvegicus 81 Trim37 ENSRNOG00000006248 ENSRNOT00000090921,ENSRNOT00000091163,ENSRNOT00000008298 1 3 3 80 10 74457423 74467242 GGTAGAACATCAGTTGCGG 59 74467284 74467304 ACTTGCTGGAACATCATTAGG 58 NA Rattus norvegicus 81 Insc ENSRNOG00000024712 ENSRNOT00000030540,ENSRNOT00000078096 1 2 2 80 1 184387168 184387186 CATCTGTCTTTCACCCAGC 59 184387229 184392550 TTGGCACAGTTTGATTAGGG 59 NA Rattus norvegicus 81 Nexn ENSRNOG00000012512 ENSRNOT00000016967 3 1 3 81 2 257472177 257472196 GCAGAATTGAGCAGGATCTG 59 257467330 257472134 GAGTCATCTCCTTCCTGCTC 60 NA Rattus norvegicus 81 Tnrc6b ENSRNOG00000024907 ENSRNOT00000091270,ENSRNOT00000033975 2 2 2 80 7 122131639 122134434 ACTCCACAGATTGATGGGTC 60 122134474 122134495 GGTTAGGTTCAGATGGAATGTC 59 NA Rattus norvegicus 81 RGD1563888 ENSRNOG00000001554 ENSRNOT00000002119,ENSRNOT00000087665 2 2 2 80 11 17129417 17129435 ACTGGGAACAGACAAAGAC 57 17080149 17129376 AGATTAGACTTTGGTACTCCCT 58 NA Rattus norvegicus 81 St8sia2 ENSRNOG00000012031 ENSRNOT00000016427,ENSRNOT00000079929 1 2 3 83 1 135365200 135365218 GAAAGCCTTAAGCACAGCA 59 135360435 135365155 AATTTGCTTCCTGATCCTCAG 58 NA Rattus norvegicus 81 Abhd16a ENSRNOG00000056637 ENSRNOT00000083284,ENSRNOT00000077082 2 2 3 80 20 5094135 5094153 GAGTGATGACAGAGGAGGG 59 5094193 5094291 TATAAATGGAGGCTTCCTCTAGC 60 NA Rattus norvegicus 81 Cep63 ENSRNOG00000008410 ENSRNOT00000056531,ENSRNOT00000031313,ENSRNOT00000084413 1 3 3 80 8 111078410 111079530 ACTCAGTAGAAAGGTCTCTGG 59 111078350 111078369 GCACATTATCCAAGACTCCC 59 NA Rattus norvegicus 81 Dmgdh ENSRNOG00000023588 ENSRNOT00000090666 2 1 2 80 2 23290420 23292855 CGGCTTATTCCAGACAGGA 59 23292899 23292917 AGCCACCTCCAATGATCAC 60 NA Rattus norvegicus 81 Prex2 ENSRNOG00000005391 ENSRNOT00000064774 1 1 2 80 5 7735299 7747506 GGATTACAAGATAGTGAAACCCAG 59 7735242 7735260 AGAGAAGGCACAGACAGTG 59 NA Rattus norvegicus 81 Adgrl2 ENSRNOG00000032660 ENSRNOT00000045020 1 1 5 80 2 258794924 258800047 ACCCTTAATCAAGGACATTCAC 59 258794865 258794885 GTTGAAGTTACCATTTAGCGG 58 NA Rattus norvegicus 81 Adgrl2 ENSRNOG00000032660 ENSRNOT00000040566 2 1 5 107 2 258803598 258805537 AACATTAAGTCTTGGGTGCTC 59 258803511 258803529 ATAAGCCATGACAACGGTC 58 NA Rattus norvegicus 81 Atp6v1h ENSRNOG00000030862 ENSRNOT00000085654 1 1 2 104 5 14297761 14297779 GGAGAATTTGGAGCAGCAG 59 14295175 14297695 TCAAATGAGCTAAGGTCCTGG 60 NA Rattus norvegicus 81 Asb7 ENSRNOG00000013795 ENSRNOT00000084082,ENSRNOT00000018436 1 2 2 80 1 127589305 127589324 CTTGCTCCATTTCTCTGCAG 59 127570179 127589262 TTAACCGTGGGATCAGCTC 60 NA Rattus norvegicus 81 LOC501233 ENSRNOG00000015438 ENSRNOT00000083500 3 1 7 80 19 15189765 15334682 CTAGGAATAGGAACCCAAATGG 58 15334722 15334741 CACCAATCTGCAAATACCCT 58 NA Rattus norvegicus 81 Myc ENSRNOG00000004500 ENSRNOT00000006188 3 1 1 70 7 102586851 102586870 GAATTTCCTTTGGGAGGTGG 59 102588490 102588508 TCCTGTTAGCGAAGCTCAC 60 NA DesignNoJunction Rattus norvegicus 81 Atp6v0a4 ENSRNOG00000013428 ENSRNOT00000079883 1 1 2 92 4 65776204 65776222 CAGGCTTTGAAGAAGAGCT 58 65775548 65776150 ACCTAAGTTGGTTTCTGTCTC 58 NA Rattus norvegicus 81 Metrnl ENSRNOG00000046202 ENSRNOT00000072190,ENSRNOT00000088495 1 2 2 80 10 110905682 110906719 CAGTGACTTTGTTGTCCGAG 59 110906762 110906780 ACCCGTAGGTGAATGACTG 59 NA Rattus norvegicus 81 Rbms3 ENSRNOG00000025881 ENSRNOT00000041548,ENSRNOT00000036672,ENSRNOT00000039904 3 3 4 81 8 124844302 124884184 TGTGTCAGTATATGACCGC 57 124844239 124844257 ATAGAAACAGCTGTCGGAG 57 NA Rattus norvegicus 81 Rbms3 ENSRNOG00000025881 ENSRNOT00000041548,ENSRNOT00000036672,ENSRNOT00000039904 1 3 4 80 8 124844301 124884184 TGTGTCAGTATATGACCGCT 59 124844240 124844258 TAGAAACAGCTGTCGGAGG 59 NA Rattus norvegicus 81 Fbxo30 ENSRNOG00000014852 ENSRNOT00000019918 3 1 1 61 1 5381531 5381555 GAAGTATCCAGAAGGAAATTCATCC 60 5387060 5387078 CAGTACTGAATCGCCACAC 59 NA DesignNoJunction Rattus norvegicus 81 Trafd1 ENSRNOG00000001351 ENSRNOT00000033984,ENSRNOT00000091375 1 2 2 80 12 40702376 40703017 TAAAGCAGCATGTGGAGAC 58 40703060 40703079 ACTTGACAACAGAAAGCTCC 59 NA Rattus norvegicus 81 Vcan ENSRNOG00000029212 ENSRNOT00000063821 3 1 4 80 2 18522672 18552912 GCCTACTGCTTTAAACGACC 59 18522611 18522632 GGAAGTCTCAGTAGGATAGCAG 60 NA Rattus norvegicus 81 Swsap1 ENSRNOG00000012604 ENSRNOT00000064580,ENSRNOT00000090202 1 2 3 101 8 22967061 22967651 ACAGTTCGAAGATTCGATTCC 59 22967714 22967732 GTAGAAGGGATGGGACAGG 59 NA Rattus norvegicus 81 Swsap1 ENSRNOG00000012604 ENSRNOT00000064580,ENSRNOT00000090202 3 2 3 102 8 22967061 22967651 ACAGTTCGAAGATTCGATTCC 59 22967715 22967733 AGTAGAAGGGATGGGACAG 58 NA Rattus norvegicus 81 Grik1 ENSRNOG00000001575 ENSRNOT00000085629,ENSRNOT00000051060,ENSRNOT00000042581,ENSRNOT00000050073,ENSRNOT00000081066 1 5 5 123 11 27868022 27876204 GATTGGGATTTGGAACTCCA 58 27865915 27867936 GGGCTCTTCCAGAATAGTG 57 NA Rattus norvegicus 81 Ablim2 ENSRNOG00000007882 ENSRNOT00000010482 2 1 4 84 14 80071062 80071080 GTCAGTCTCTGTCCCTCAG 59 80054844 80071019 ATCTTATACTGTGAGTAGAGGCTG 59 NA Rattus norvegicus 81 Adamts20 ENSRNOG00000033397 ENSRNOT00000074793 3 1 3 111 7 135550920 135550938 AACCTATGACCTGTCTCCC 58 135550826 135550846 AGCTTCTCCTACCAAGTAGG 58 NA Rattus norvegicus 81 Gsta1 ENSRNOG00000013484 ENSRNOT00000085195,ENSRNOT00000018325 1 2 2 80 9 27369484 27369504 CCATTCTCAACTACATTGCCA 59 27368418 27369443 CTGCATACATGTCGATGAGG 59 NA Rattus norvegicus 81 Gsta1 ENSRNOG00000013484 ENSRNOT00000085195,ENSRNOT00000018325 3 2 2 80 9 27369486 27369506 AGCCATTCTCAACTACATTGC 59 27368420 27369444 GCATACATGTCGATGAGGG 58 NA Rattus norvegicus 81 Neu1 ENSRNOG00000032942 ENSRNOT00000049344 1 1 6 109 20 4614410 4614524 CGAGTACCGAGTGAACCTG 60 4614597 4614615 CTGTCAGGGATGAGTAGCC 59 NA Rattus norvegicus 81 Ces1d ENSRNOG00000015519 ENSRNOT00000021812,ENSRNOT00000090865,ENSRNOT00000078874 1 3 3 80 19 15213422 15213440 AGGGCCATTTCTGAGAGTG 59 15213482 15215141 AGCAATCAGATTAGCAATGGG 59 NA Rattus norvegicus 81 Sos2 ENSRNOG00000004826 ENSRNOT00000089891,ENSRNOT00000006425 2 2 2 80 6 91891993 91892013 AGATGTGGACCTCAATAGCTC 59 91888218 91890318 CTGAAGAAAGACTTTGAGTGTGG 60 NA Rattus norvegicus 81 Dpp4 ENSRNOG00000030763 ENSRNOT00000085426,ENSRNOT00000077788 1 2 3 106 3 48295247 48295265 TCAGATCTCCAAAGCCCTG 59 48293661 48293683 AATAGATGTGCTGGTGGCT 59 NA Rattus norvegicus 81 Map4k3 ENSRNOG00000007172 ENSRNOT00000078044 3 1 3 103 6 3373063 3395690 TTTCGAGTGTTTCAGGCAC 59 3355308 3355327 ATTTCTTGCTGTACAACCGC 60 NA Rattus norvegicus 81 Fars2 ENSRNOG00000016135 ENSRNOT00000021660 3 1 2 81 17 29210778 29210797 TTTCTGGAGTGAGGATGAGC 60 29205609 29210737 GAACCATCTCTGAAACTTGACG 60 NA Rattus norvegicus 81 Lrrc43 ENSRNOG00000008470 ENSRNOT00000082462 3 1 2 82 12 38514411 38516437 CAACAACTGGCCTCTTCTC 59 38514347 38514367 TACTGAGACCCAGTATCATGC 59 NA Rattus norvegicus 81 Csnk2b ENSRNOG00000000847 ENSRNOT00000001123,ENSRNOT00000076528 3 2 3 81 20 5109838 5109856 TCACATGCTCTTCATGGTG 58 5108904 5109793 CTTGAAACCGTAGAGCCTG 58 NA Rattus norvegicus 81 Scaf4 ENSRNOG00000002104 ENSRNOT00000002881 3 1 2 80 11 30385850 30385868 CCCACCTCCTATAACTCCA 58 30385636 30385807 CCAGCGATAGTAGAGTTTGG 58 NA Rattus norvegicus 81 Slc6a2 ENSRNOG00000016311 ENSRNOT00000083684,ENSRNOT00000022285,ENSRNOT00000048470 3 3 3 82 19 15419657 15421200 TTTCTTCAAAGGAGTGGGCT 60 15419594 15419612 GTGACCAGGCAATGATGAC 59 NA Rattus norvegicus 81 Cab39 ENSRNOG00000017297 ENSRNOT00000085332 1 1 2 85 9 92878367 92880330 CTCATTGACTTTGAGGGCA 58 92880377 92880397 ACAGTAGGAGTTCTTGTACCA 58 NA Rattus norvegicus 81 Snap91 ENSRNOG00000023861 ENSRNOT00000032792 2 1 2 80 8 94500711 94500729 TCCCAGCAGTCTTATGGAG 59 94494288 94500670 CCAGATCCTTCTTTGTTTCCAG 59 NA Rattus norvegicus 81 Sbf2 ENSRNOG00000009812 ENSRNOT00000077125 1 1 2 80 1 175256111 175284098 ATCAATCTCCAGGGAACGA 58 175256049 175256067 TGCAAATACTTCTGCAGGT 57 NA Rattus norvegicus 81 Sbf2 ENSRNOG00000009812 ENSRNOT00000013126 2 1 2 80 1 174950527 174950545 TAGAAATGGTCGTCCCTGC 60 174949816 174950486 TGGTCTTGAGATCAAAGAAAGC 59 NA Rattus norvegicus 81 LOC100360821 ENSRNOG00000022601 ENSRNOT00000039366 1 1 1 78 5 58416568 58416586 TTGTAGGATGGCAACAGCT 59 58416965 58416984 TGGTAAAGAAGTTGTAGGCC 58 NA DesignNoJunction Rattus norvegicus 81 LOC685363 ENSRNOG00000040060 ENSRNOT00000061601 2 1 1 62 11 28979104 28979122 CTATGGCTATGGAGGCCTG 59 28973583 28973601 TAGTAGGAGCCATAGCCAC 58 NA DesignNoJunction Rattus norvegicus 81 Ap3b1 ENSRNOG00000010624 ENSRNOT00000066302 1 1 2 80 2 24224273 24224804 GTTCTTCAAGAAAGGTTTGCAG 59 24224845 24224863 GGAACCTTCCTTCAGTTCC 58 NA Rattus norvegicus 81 Ildr2 ENSRNOG00000025151 ENSRNOT00000073696 1 1 6 86 13 84491837 84491860 TCTATTACTGTATCATCACCACCC 60 84491905 84522955 AACCTTTGCGAACCAACAC 60 NA Rattus norvegicus 81 Kcnq5 ENSRNOG00000013781 ENSRNOT00000040034 2 1 2 113 9 27642216 27642234 GATGAGAAGTCGGTCTCCA 59 27630489 27639494 AAAGCTCAGCTTCTGACTG 58 NA Rattus norvegicus 81 Rab11b ENSRNOG00000007648 ENSRNOT00000078122 3 1 2 80 7 18600682 18600949 CTTTGCAGAAAGAAACTTGTCC 59 18600623 18600643 AGGATGTTCTTGAATGCTTCC 59 NA Rattus norvegicus 81 Synj1 ENSRNOG00000002051 ENSRNOT00000052033 2 1 3 86 11 31147287 31147305 CCATGTGGTCTGTGAATGG 59 31144992 31147237 TTAACTTTCCAGCCTTGGC 58 NA Rattus norvegicus 81 Synj1 ENSRNOG00000002051 ENSRNOT00000052033,ENSRNOT00000065535 3 2 3 92 11 31116615 31117712 AAGAATTTGGAGGTGTCGG 58 31115541 31115559 TATCTTTCCGTGCTGTTCC 58 NA Rattus norvegicus 81 Slco3a1 ENSRNOG00000032798 ENSRNOT00000043854,ENSRNOT00000075893,ENSRNOT00000082564 2 3 3 80 1 135836244 135836262 TACGTCTCCTTCCTCTTCC 58 135834659 135836200 ACGTGCTGAATTGTTTCCA 58 NA Rattus norvegicus 81 Fnbp1 ENSRNOG00000008258 ENSRNOT00000011224 3 1 2 195 3 9936327 9936606 TGTTGCCCTACTGGATCAG 59 9926867 9927754 CGCCGTGTACTTGTATTCC 59 NA Rattus norvegicus 81 Cand2 ENSRNOG00000010473 ENSRNOT00000014217 2 1 3 189 4 147686603 147692070 AAGACTTCAGGTTCATGGCT 59 147692772 147692790 TGGTACTCCTTCACCTTGC 59 NA Rattus norvegicus 81 Zfp799 ENSRNOG00000032552 ENSRNOT00000037708 3 1 2 112 7 15072934 15072952 ACACCTTGAGGAACCTGTG 60 15071204 15071224 ACAGAGTTTCTCCAACAACTG 59 NA DesignNoJunction Rattus norvegicus 81 LOC100911119 ENSRNOG00000032769 ENSRNOT00000046355,ENSRNOT00000081843 2 2 2 136 3 143807136 143807154 CTGTCCAAGGGATCACTGG 60 143804040 143804059 GCATTGGTCATCTTGTAGCT 58 NA DesignNoJunction Rattus norvegicus 81 Qrich1 ENSRNOG00000025071 ENSRNOT00000080778 3 1 2 83 8 117343828 117344212 GACTGGCCAGAAAGTTACAG 59 117344258 117344276 TAGAGCTTGATGGGACACC 59 NA Rattus norvegicus 81 Rab23 ENSRNOG00000012629 ENSRNOT00000090385,ENSRNOT00000016933 1 2 2 81 9 38473190 38474097 CAAGATAGGTGTCTTTAATGCG 58 38473130 38473148 GTTGATGACATCTCCACCG 58 NA Rattus norvegicus 81 Dclre1b ENSRNOG00000019367 ENSRNOT00000026213,ENSRNOT00000080702 3 2 2 81 2 206288317 206291579 AAAGATTGGCCTCTATAGTCTAGG 59 206288259 206288277 ACTCAATACCACCCAGGTC 59 NA Rattus norvegicus 81 Pitpnm2 ENSRNOG00000029260 ENSRNOT00000048528,ENSRNOT00000091084 1 2 3 81 12 37900826 37900844 CTCCATCAGCCTTTCTCCC 60 37900888 37900989 TGTGATGAACTGACACTGCT 60 NA Rattus norvegicus 81 Epas1 ENSRNOG00000021318 ENSRNOT00000034991 2 1 3 89 6 10348323 10349064 GAGAAGCATGAGAGCAGCT 60 10349116 10349135 ATAGAAGACCTCCGTCTCCT 59 NA Rattus norvegicus 81 Glyat ENSRNOG00000012142 ENSRNOT00000087526 2 1 2 81 1 229077694 229078805 CTGATTTGGGTTCCCAGTC 58 229078849 229078868 TCTGAGTGTTTGACTTGGAG 58 NA Rattus norvegicus 81 Zfp266 ENSRNOG00000034037 ENSRNOT00000085060 2 1 2 80 8 21521987 21522758 CTGTTACCAGGATTCAGTGAC 59 21521927 21521947 TGAGTCAGGTCCAGTAAAGTC 59 NA Rattus norvegicus 81 Trim33 ENSRNOG00000018946 ENSRNOT00000025600 3 1 2 85 2 205856622 205856641 CCAGCATTACCAAATCCCAG 59 205856686 205858230 CTGAGTCAGCTTCATTAAACCT 59 NA Rattus norvegicus 81 Nelfe ENSRNOG00000000420 ENSRNOT00000076352,ENSRNOT00000000478 1 2 3 80 20 4534115 4534220 CCCTTTCCGTAGGTCAGAC 60 4534260 4534282 ATGTCCTCTCCATACACATACAG 60 NA Rattus norvegicus 81 Ube2f ENSRNOG00000019953 ENSRNOT00000042082 2 1 2 86 9 98398207 98398225 CTCGGAGGGTTTCTGTGAG 60 98406832 98418598 CCTGGTAGTAACCCTCATAAGG 60 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000082605,ENSRNOT00000014230,ENSRNOT00000083233 1 5 10 82 10 87127013 87127031 AAGTCGACAGAGACAGTCG 59 87122198 87126969 CATCATAATCGTCTGGGTCCT 60 NA Rattus norvegicus 81 Smarce1 ENSRNOG00000010676 ENSRNOT00000086103,ENSRNOT00000080836,ENSRNOT00000014230,ENSRNOT00000083233 2 4 10 81 10 87118088 87120489 CGATGGAGACAGAGGAGAC 59 87118025 87118043 TCCTCAGGAGTAGATGTGC 58 NA Rattus norvegicus 81 Lrrc45 ENSRNOG00000045926 ENSRNOT00000082551,ENSRNOT00000071487,ENSRNOT00000082209 3 3 3 102 10 109900902 109903324 AACTGAAAGTGGTCGGGAG 60 109903388 109903408 GAGATTTCTGCCTCTTTGAGC 59 NA Rattus norvegicus 81 Poc5 ENSRNOG00000018193 ENSRNOT00000087418,ENSRNOT00000061507 2 2 3 82 2 27003790 27003810 CTGATGAGGACAAGTGTTCAC 59 27003850 27006172 TTCATATTCCTCCTGAAGGTCTG 60 NA Rattus norvegicus 81 Mier2 ENSRNOG00000000175 ENSRNOT00000067771,ENSRNOT00000090048 3 2 2 80 7 13045339 13045623 TTCATCGACCAGAGCAGTG 60 13045667 13045685 CTCAGAGATGGGCTCTGAC 59 NA Rattus norvegicus 81 Arid5a ENSRNOG00000015382 ENSRNOT00000089673,ENSRNOT00000067688 2 2 2 60 9 42882402 42882420 TGAGAAGCTGAAGAAGGCC 60 42882444 42882806 TTCTGATGTGGTCTGGTCC 59 NA DesignRelaxed Rattus norvegicus 81 Erg ENSRNOG00000001652 ENSRNOT00000078425,ENSRNOT00000078818 1 2 3 85 11 35696795 35749413 ACTATTAAGGAGGCCTTGTCAG 60 35696731 35696749 TCTGTCTTAGCCAGGTGTG 59 NA Rattus norvegicus 81 Guca1a ENSRNOG00000015402 ENSRNOT00000020902,ENSRNOT00000065904 2 2 2 85 9 15610529 15610547 TCTTTGGCCTCAAGAACCT 59 15610594 15618404 ATAGCCATCCTTGTTGAAGTC 58 NA Rattus norvegicus 81 Tmprss2 ENSRNOG00000001976 ENSRNOT00000066413,ENSRNOT00000002713 3 2 2 80 11 38082811 38083311 TGCTTTGGAAGTTCTGGGA 59 38082749 38082768 GGGAGGAGCTGATACATGTC 60 NA Rattus norvegicus 81 Bag6 ENSRNOG00000000851 ENSRNOT00000060832 1 1 2 98 20 5133560 5133661 TCTCTGGAGCTCTACAGGG 60 5133723 5133741 CAAGAACAGGCTGCATGAG 59 NA Rattus norvegicus 81 Abcg3l1 ENSRNOG00000030216 ENSRNOT00000087758,ENSRNOT00000079795,ENSRNOT00000042532 3 3 3 80 14 6436677 6436696 CTAGATACAGGCTTCCTGCC 60 6435917 6436636 GTGTAGCAAAGCCCTAAATCC 59 NA Rattus norvegicus 81 Trim5 ENSRNOG00000017191 ENSRNOT00000023100,ENSRNOT00000030827 1 2 3 80 1 169454327 169455688 GGAGTATAAGGAGAAGCTGC 58 169454266 169454285 AGGTCATCTTTCCAGTTCTC 57 NA Rattus norvegicus 81 Gpd2 ENSRNOG00000033824 ENSRNOT00000090323 1 1 3 94 3 43293235 43294088 GATGTTGAACAGTATAGGATGGTG 59 43294141 43294159 ATTATAGGCAGCGGAGCTG 60 NA Rattus norvegicus 81 Zfp202 ENSRNOG00000058932 ENSRNOT00000085084,ENSRNOT00000084416 3 2 2 81 8 44063193 44063506 CTGGAAAGTGAGGTTCCAG 58 44063551 44063569 GAAGAGCAACCATCTCTGG 58 NA Rattus norvegicus 81 Tacc2 ENSRNOG00000020457 ENSRNOT00000054937,ENSRNOT00000047161 3 2 4 168 1 201226086 201238798 ACATCTGACAGTCCAGAGC 59 201238930 201281634 CTCAGAGTCGGAACTCCTG 59 NA Rattus norvegicus 81 Tmub2 ENSRNOG00000020916 ENSRNOT00000082722,ENSRNOT00000055185 2 2 2 85 10 90231208 90232778 AACCTTATGAGCGTGGACC 60 90232827 90232845 ATCACCTCGTTACCCACAC 59 NA Rattus norvegicus 81 LOC103693683 ENSRNOG00000046663 ENSRNOT00000071728,ENSRNOT00000091821,ENSRNOT00000071897,ENSRNOT00000073643 1 4 4 80 13 91228836 91228854 TGGAAGCCAATGGCTACTC 60 91154513 91227999 TTCAGAAGATCTCCCGTCTG 59 NA Rattus norvegicus 81 Slc25a12 ENSRNOG00000022922 ENSRNOT00000036728 1 1 2 80 3 57946315 57957211 ACCAAGGATGGGTTGATCTC 60 57946254 57946276 CACTATGAACATGGAATCTGGAG 59 NA Rattus norvegicus 81 Fxyd2 ENSRNOG00000016469 ENSRNOT00000022074 3 1 2 125 8 49713238 49715433 TGTCAGCTAACCATGGTGG 60 49715808 49715826 GGAGAATGAGGAGTCCCAC 59 NA Rattus norvegicus 81 Mapk6 ENSRNOG00000009381 ENSRNOT00000013053,ENSRNOT00000080797 1 2 2 80 8 82339041 82339059 ACTTGGTGCTGAAGATTGG 58 82337333 82339001 CTTCAGAAAGATGACCCTTATGG 59 NA Rattus norvegicus 81 Dennd1a ENSRNOG00000010526 ENSRNOT00000091747 1 1 2 106 3 22413272 22458901 ATATCCTGAGGTGCAGAGG 58 22381232 22390106 TAACTGAGAGGCTGTCCAC 59 NA Rattus norvegicus 81 Mgst3 ENSRNOG00000004245 ENSRNOT00000005719 2 1 1 80 13 85606389 85606409 ATGTACAGCACAGATCCTGAG 60 85604624 85606347 AGGGTACACCTCCAATGTG 59 NA Rattus norvegicus 81 Etfa ENSRNOG00000015233 ENSRNOT00000020544 1 1 1 80 8 60072494 60076825 AAATGTGACAAGGTGGTACAG 59 60072434 60072453 TTTGTACGCATCATGCTGAG 59 NA Rattus norvegicus 81 LOC685431 ENSRNOG00000024763 ENSRNOT00000034026 2 1 1 60 X 21313761 21313780 CTTTCAATGTGATCAACGGC 58 21313718 21313737 ATCATGAACTCTTGCATGGC 59 NA DesignNoJunction Rattus norvegicus 81 Rn60_10_0878.6 ENSRNOG00000051172 ENSRNOT00000076076 1 1 1 60 10 87936673 87936691 TAATCAGCAGGAAGCAGTC 57 87936631 87936649 TCCAGGTCATACTTGCCAG 59 NA DesignNoJunctionSingleExon Rattus norvegicus 81 Zdhhc2 ENSRNOG00000022686 ENSRNOT00000036092 3 1 1 85 16 54976526 55001984 CTGTGCATAGTGTCCATGG 58 54975309 54975327 GACCAGACAAACATTGCGA 59 NA Rattus norvegicus 81 Olr191-ps ENSRNOG00000017362 ENSRNOT00000023315 3 1 1 81 1 169973074 169973093 CCATGTACTATCTGCTTGCC 59 169971949 169973031 AAGATAAGCAGGACCTTGGG 60 NA Rattus norvegicus 81 C2 ENSRNOG00000051235 ENSRNOT00000060607 3 1 1 80 20 4552283 4553459 TGTCTGCTACAAAGATCACG 58 4552222 4552243 TTATTCATCATGAGGTAGACGC 58 NA Rattus norvegicus 81 RGD1563441 ENSRNOG00000021540 ENSRNOT00000012061 3 1 1 156 10 55940906 55940924 GAGAGGATGGAGAGGACGA 60 55941044 55941162 GGACAGTAGAGCACATTGC 59 NA DesignRelaxed Rattus norvegicus 81 Pisd ENSRNOG00000018319 ENSRNOT00000024813,ENSRNOT00000089198 2 2 3 80 14 83344922 83345147 GCTTGCACAGTGTGATCAG 60 83345190 83345209 TTACTTGCTCCACCTCAGAG 59 NA Rattus norvegicus 81 Snx3 ENSRNOG00000046705 ENSRNOT00000074532 2 1 2 84 20 47225860 47253676 AGGGTCAAGACCAATCTTCC 60 47253724 47253742 GTTCACTTCGAAGCCACTC 59 NA Rattus norvegicus 81 Atp2a3 ENSRNOG00000017912 ENSRNOT00000065181 3 1 3 80 10 59556434 59556452 CTTCAGATGTCTCTGCCTG 58 59556496 59556903 CTCAAGAACACCATCCACG 59 NA Rattus norvegicus 81 Nr4a2 ENSRNOG00000005600 ENSRNOT00000078001 1 1 2 94 3 43113046 43113171 AGTGGAGGAATATGAACATCGA 59 43112825 43112843 TCTCTTGGGTTCCTTGAGC 59 NA Rattus norvegicus 81 Smarcc1 ENSRNOG00000020804 ENSRNOT00000064140 1 1 2 110 8 118323043 118323062 CATTCACCCTACTGGGAGTG 60 118323135 118323831 TGATGTAACCACATGCCGT 60 NA Rattus norvegicus 81 Rgs12 ENSRNOG00000030568 ENSRNOT00000040215,ENSRNOT00000045068 1 2 3 145 14 81014704 81037658 TGATCTCGAGTCTGCAACTG 60 80995575 80995593 AGCTTGCAACTCTCCTCTC 59 NA Rattus norvegicus 81 Ahcyl1 ENSRNOG00000018569 ENSRNOT00000066501,ENSRNOT00000079993 1 2 2 80 2 210449991 210450468 CAGACAGCGGTATTGATTGAG 59 210449931 210449953 CTGAGTTGAATAGATGTTGCAGG 60 NA Rattus norvegicus 81 Nfrkb ENSRNOG00000008278 ENSRNOT00000083659 3 1 2 104 8 32545800 32545906 AGGCTTTCTGTAAGCAGGA 59 32546707 32546725 GTTTCTCCTCTCCTGTGCT 59 NA Rattus norvegicus 81 Pfkfb4 ENSRNOG00000048130 ENSRNOT00000066305 2 1 2 83 8 118393836 118393854 ACTGAGGACTTCATGAGGC 59 118393901 118395799 GTAGGACAGATCCCTGTCC 59 NA Rattus norvegicus 81 Lrriq4 ENSRNOG00000009004 ENSRNOT00000058919,ENSRNOT00000011932 3 2 2 80 2 116364364 116369571 AGTGAAGCAGTTACCACCA 59 116364302 116364323 AAGGACACAAAGTCATTTCCTG 59 NA Rattus norvegicus 81 Tcirg1 ENSRNOG00000017220 ENSRNOT00000023425,ENSRNOT00000089107 3 2 2 80 1 219135373 219135393 GGATGACCTTTGTCATCTCCT 60 219135128 219135333 CATGACAGTGAAAGCAGTCTG 60 NA Rattus norvegicus 81 Wnk4 ENSRNOG00000020441 ENSRNOT00000076366,ENSRNOT00000027770 3 2 3 81 10 89181819 89181838 TCCTTCAAGACCGTGTATCG 60 89181882 89183349 AGAGTTTCCGAGTCTGCAG 59 NA Rattus norvegicus 81 Pik3r1 ENSRNOG00000018903 ENSRNOT00000075057 1 1 2 127 2 31751773 31753438 GAAATGGATCCACCAGCAC 59 31750827 31751686 ACTTCTTCCCTTGAGATATCTCC 59 NA Rattus norvegicus 81 LOC365791 ENSRNOG00000038242 ENSRNOT00000090907 2 1 2 80 2 137395579 137396761 TACTTTCCTCACCAGATCCA 58 137394095 137394115 ATATCCTCAGGGAATATGTGC 57 NA Rattus norvegicus 81 Zim1 ENSRNOG00000015071 ENSRNOT00000087668,ENSRNOT00000020416 3 2 2 82 1 70260158 70260179 GCCAAAGAGAATGATACTCCTG 59 70260222 70264200 GTCTTCTTCCCTGCAGAGG 60 NA Rattus norvegicus 81 Vps25 ENSRNOG00000051179 ENSRNOT00000043754,ENSRNOT00000076944,ENSRNOT00000076658,ENSRNOT00000075857 1 4 5 81 10 89175112 89175130 AACAACGTCAAGCTACAGC 59 89175937 89176830 CGAGGTTCCCTTTCTTCCT 59 NA Rattus norvegicus 81 Setd2 ENSRNOG00000020915 ENSRNOT00000087154,ENSRNOT00000028409 2 2 2 80 8 118871496 118873074 GTAATCACGAGACAGACTCAG 58 118873116 118873134 CTCAGCTTCATGCTCAAGG 59 NA Rattus norvegicus 81 Ramp2 ENSRNOG00000020415 ENSRNOT00000088331 2 1 2 187 10 89166948 89167809 CTCGCTGTCTCAACCTCTC 60 89168397 89168546 AGGTTGCTGTAATACCTGCT 59 NA Rattus norvegicus 81 Pik3ip1 ENSRNOG00000018859 ENSRNOT00000085228 2 1 2 86 14 83561832 83561850 TACATCAGCAGCGAGACTG 60 83561900 83562975 TGTCTCTTTGTCACCAGGG 59 NA DesignRelaxed Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000010689,ENSRNOT00000056727,ENSRNOT00000087190,ENSRNOT00000086524 1 4 5 80 8 99640718 99640737 CGAGAAGTCATGACTCTGGA 59 99640777 99640898 CTGGATTTCTATCTCCTGGAGG 60 NA Rattus norvegicus 81 Plscr1 ENSRNOG00000008048 ENSRNOT00000010689,ENSRNOT00000056727,ENSRNOT00000086524 3 3 5 80 8 99640987 99641005 ACGTTCTAAAGGTCGTTGG 58 99641046 99643772 CCTCATCTAGAGATTTGAGCTC 58 NA Rattus norvegicus 81 Il1r1 ENSRNOG00000014504 ENSRNOT00000082408 1 1 4 80 9 47030717 47034227 ATACCCAGCTTCAGATGGA 58 47034270 47034289 AAGTATGCAAAGGATCCCTC 57 NA Rattus norvegicus 81 Il1r1 ENSRNOG00000014504 ENSRNOT00000082146,ENSRNOT00000019673,ENSRNOT00000087112 3 3 4 81 9 47030664 47030685 ATCTGCTTCGTTAAGAACACTC 59 47030722 47032112 GGTAATTCTTGAAGTCAGGAACTG 60 NA Rattus norvegicus 81 G6pc ENSRNOG00000051171 ENSRNOT00000028033,ENSRNOT00000085831 2 2 3 82 10 89292854 89294583 CTTGTCAGGCATTGCTGTG 60 89294627 89294647 TGATGAGACAGTACCTCTGGA 60 NA Rattus norvegicus 81 Cadm1 ENSRNOG00000018778 ENSRNOT00000079797 3 1 2 98 8 52168572 52186857 AGTTCACGATTCTCGAGCA 59 52186919 52186937 CATAGCATGGCAAACACCA 59 NA Rattus norvegicus 81 Pfdn4 ENSRNOG00000050932 ENSRNOT00000070809 2 1 1 60 3 168131001 168131021 CCAGGAAATGTTAGAGGATGC 59 168132360 168132380 GGACTCTAAGGCATTGATCTC 58 NA DesignNoJunction Rattus norvegicus 81 Slc25a38 ENSRNOG00000018552 ENSRNOT00000025142 3 1 2 163 8 128790555 128794275 ACGCTCATGTTACATCCAG 58 128795219 128795237 AAGAACACAGACAGCATCC 58 NA Rattus norvegicus 81 Pfkfb1 ENSRNOG00000000165 ENSRNOT00000000178 3 1 3 84 X 23124624 23144187 AGAGAACAGCCTCCATACC 59 23124558 23124576 ATGTAGGTCTTGCCTCGAG 59 NA Rattus norvegicus 81 Grik2 ENSRNOG00000000368 ENSRNOT00000076805 2 1 2 84 20 54269466 54517311 ATGTGTTAAGATTCGGTGGT 57 54269401 54269420 TTCACAGCAAATCTGAATGC 57 NA Rattus norvegicus 81 Rcn3 ENSRNOG00000043007 ENSRNOT00000085352,ENSRNOT00000027917 3 2 2 104 1 101085491 101085512 GAATTTCCAGTACGACCATGAG 59 101083061 101085426 TCTACAATCCGCCCAAGTC 60 NA Rattus norvegicus 81 Gorasp1 ENSRNOG00000018047 ENSRNOT00000024408,ENSRNOT00000084950 1 2 2 87 8 128616389 128616855 CTCAAGGCTGAACAAGGAG 58 128616320 128616338 CATGTTGAACACCTCCAGC 59 NA Rattus norvegicus 81 Tdrd7 ENSRNOG00000055779 ENSRNOT00000090186 1 1 3 90 5 61587768 61587786 AGCTAAGGCTGATGTGGAC 60 61587840 61589829 CTTTGGACTGAACCTGCTG 59 NA Rattus norvegicus 81 Rasl10a ENSRNOG00000008951 ENSRNOT00000064933 3 1 2 60 14 85312062 85312081 TGGGAATTAGAGGCAGTAGG 59 85312281 85312299 AAGCTCCAGTCTTTAGGGT 58 NA DesignNoJunction Rattus norvegicus 81 Dock6 ENSRNOG00000010652 ENSRNOT00000064551,ENSRNOT00000090424 2 2 2 80 8 22853902 22853921 CTTCTACCATGTTAGCTGCC 59 22853733 22853861 TGTAACAGAGGAATCCAAGTG 58 NA Rattus norvegicus 81 Dock6 ENSRNOG00000010652 ENSRNOT00000090424 2 1 2 81 8 22825596 22825617 CCTGGATGAACAAGAGTTTGTG 60 22825448 22825555 ATAGAACTCCTCTAGCCGGT 60 NA Rattus norvegicus 81 Bptf ENSRNOG00000047296 ENSRNOT00000066487 1 1 2 101 10 95255128 95255148 ACTACAATCCCAGTGATTCCC 60 95250577 95255065 TGTTATGAGACCTGCTGGC 60 NA Rattus norvegicus 81 Tgm4 ENSRNOG00000004320 ENSRNOT00000055822 3 1 2 82 8 132120519 132135488 CTCCAGGAACATGCTTGTC 59 132135533 132135552 TTTGGTACTCAATCGTGTGG 58 NA Rattus norvegicus 81 Mfsd6 ENSRNOG00000012663 ENSRNOT00000083487 2 1 2 80 9 53706331 53706351 ACCAAGTTAAAGAGCTGATGC 59 53706393 53708461 CCTTTCCCATGTGCAACTG 59 NA Rattus norvegicus 81 Ubr4 ENSRNOG00000018183 ENSRNOT00000039663 2 1 2 94 5 157899480 157899498 TCCTAACCTGAACCAGAGC 59 157899556 157901426 AACTCACAACCAGCCTCTC 60 NA Rattus norvegicus 81 Syncrip ENSRNOG00000000204 ENSRNOT00000078891,ENSRNOT00000041655 3 2 3 81 8 96132535 96132553 CAGACATTGCTTGATGCTG 57 96129136 96132490 CATACTTCCTCTGACCTGC 57 NA Rattus norvegicus 81 Mon2 ENSRNOG00000004185 ENSRNOT00000005654 1 1 3 90 7 66740020 66743115 GCACAGAGATATAGACCCTCC 59 66743167 66743185 ATATGCGTCTTTCGCACAG 59 NA Rattus norvegicus 81 Otud3 ENSRNOG00000017037 ENSRNOT00000023143 2 1 2 88 5 157347612 157347630 CAGAGTGGAGACCAGTGAG 59 157346796 157347560 GCTTGTTTGTGACCTTCGG 60 NA Rattus norvegicus 81 Tbc1d5 ENSRNOG00000010637 ENSRNOT00000083387 3 1 2 112 9 1631894 1635616 ACAGTTGAACAAAGGCGAC 59 1654481 1654499 TCGGAGATGAACTGATGGT 58 NA Rattus norvegicus 81 Tpp2 ENSRNOG00000011194 ENSRNOT00000078220,ENSRNOT00000085267,ENSRNOT00000015393 1 3 3 80 9 50705165 50705184 GGACTCAGCTAATGAATGGG 58 50705225 50706519 CTTTCAGTCCTGAAAGTACCA 58 NA Rattus norvegicus 81 Fat1 ENSRNOG00000030954 ENSRNOT00000067486 2 1 2 91 16 50373568 50379264 ATGACAATGGGTACCACTG 57 50373495 50373515 ATCGATAACCTCGTAATTGGG 58 NA Rattus norvegicus 81 Fat1 ENSRNOG00000030954 ENSRNOT00000081023 3 1 2 83 16 50379269 50379287 CTCCTTCCAGTCAGAGTCC 59 50373562 50374550 GTATCCCAGTGGTACCCTC 59 NA Rattus norvegicus 81 Amy2a3 ENSRNOG00000055613 ENSRNOT00000087259,ENSRNOT00000087839,ENSRNOT00000086695 1 3 3 80 2 216375814 216375835 AGAAGTGACCATTAATCCAGAC 58 216375648 216375774 ACCATGTTCCTGATTTGACG 59 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721,ENSRNOT00000080289,ENSRNOT00000072848,ENSRNOT00000077561 3 6 8 93 20 4365725 4365829 AGACTCGAGGAGAGGAAGG 60 4365886 4365904 CATTCTCTGGCATTTCCGC 60 NA Rattus norvegicus 81 Ager ENSRNOG00000000439 ENSRNOT00000000508,ENSRNOT00000085277,ENSRNOT00000089721 3 3 8 89 20 4364127 4364248 CAATGTCCCTAATAAGGTGGG 58 4364299 4364317 ATCAGAGGTTTCCCATCCA 58 NA Rattus norvegicus 81 Nr2f2 ENSRNOG00000010308 ENSRNOT00000014152 2 1 2 129 1 131454165 131454183 GGAGGAACCTGAGCTACAC 60 131452451 131454072 CTCTGTACAGCTTCCCGTC 60 NA Rattus norvegicus 81 Leng8 ENSRNOG00000018642 ENSRNOT00000025338,ENSRNOT00000077964 1 2 2 80 1 73730894 73730913 AGCAACAGTACTACCAGTGG 60 73729829 73730851 TCTGGTACATGCTCATGGG 59 NA Rattus norvegicus 81 Ppt2 ENSRNOG00000000435 ENSRNOT00000000497,ENSRNOT00000091468,ENSRNOT00000087055,ENSRNOT00000077655,ENSRNOT00000090518 1 5 8 80 20 4389081 4389099 GTCTGTCATGGATGAGCAC 58 4388931 4389038 TAGTCCGTGTCTCCATACTG 58 NA Rattus norvegicus 81 RGD1560789 ENSRNOG00000020641 ENSRNOT00000035386 1 1 1 77 8 43534538 43534556 TTCCTCTTCAGGCCTTAGG 58 43534447 43534465 CCTTAACCAGGTGACCCAG 60 NA DesignNoJunction Rattus norvegicus 81 Golga4 ENSRNOG00000029910 ENSRNOT00000087753 3 1 3 81 8 127243010 127243030 ACTACTGTCCTAAGATTCCCT 57 127243073 127245683 GAGGTGAGGTGAACATCAG 58 NA Rattus norvegicus 81 Adamts6 ENSRNOG00000012655 ENSRNOT00000072577 2 1 2 83 2 34547130 34559269 CTTCATGGACTGGTGTCCA 59 34559313 34559334 GGTCACAGAAATTGTTCTGGAC 60 NA Rattus norvegicus 81 Lcn12 ENSRNOG00000028730 ENSRNOT00000080257 2 1 2 90 3 2716628 2717613 ATGCAGAGGACTGGTTACTG 60 2716557 2716575 ATGTTGAGAGCAATGGCAG 59 NA Rattus norvegicus 81 B4galt5 ENSRNOG00000008283 ENSRNOT00000064849 2 1 2 130 3 164048716 164048736 TTCATGAGCTCTTCTCCAGAG 59 164041132 164047818 CAGACACAGGAAGGAGTCG 60 NA Rattus norvegicus 81 Tnxb ENSRNOG00000033581 ENSRNOT00000088392,ENSRNOT00000086152 2 2 8 81 20 4485780 4485798 CTTCCGAGTAGACTCAGCG 60 4485842 4485933 GTAGCTCATAGAGTCACCCG 60 NA Rattus norvegicus 81 Myoz2 ENSRNOG00000014815 ENSRNOT00000080215 1 1 2 84 2 227199238 227206859 GAAATCCATGGACACGATGTC 60 227199174 227199198 GGGACAATTCTTCTATCATGATGTC 60 NA Rattus norvegicus 81 Rtel1 ENSRNOG00000027513 ENSRNOT00000055030 1 1 2 81 3 176854355 176854373 CAACGATGTAGCTACCAGC 58 176854417 176854928 CTCTCCTTCCTTGCTTACTG 58 NA Rattus norvegicus 81 Rtel1 ENSRNOG00000027513 ENSRNOT00000055030 3 1 2 90 3 176854415 176854925 GCCAGTAAGCAAGGAAGGA 60 176854979 176854997 GATTCAGGTGCTCTCCAGG 60 NA Rattus norvegicus 81 Cdc40 ENSRNOG00000000581 ENSRNOT00000064081,ENSRNOT00000087740,ENSRNOT00000077926 1 3 3 80 20 48563763 48564813 TTGTACAGTGGGACATTCG 58 48564855 48564875 CAAAGACAATCGTGTTGACAG 58 NA Rattus norvegicus 81 Atg5 ENSRNOG00000000322 ENSRNOT00000057078 1 1 2 94 20 49325082 49325101 TTCTTGCATCAGCTCAGCT 60 49332314 49332332 CTCAACTGCATCCTTGCAC 60 NA Rattus norvegicus 81 Slc25a15 ENSRNOG00000011881 ENSRNOT00000050637 1 1 2 80 16 74551267 74551286 GCCAAAGACCTGTCTTTCTG 59 74551324 74552023 GAATACAAGGCTGTTATTCCTTCC 60 NA Rattus norvegicus 81 Tstd2 ENSRNOG00000009724 ENSRNOT00000012915 2 1 2 90 5 61713163 61715430 GGTCTCAGAATGTTCATATTGTGG 60 61713096 61713115 AGAACAGGTCAACACAAGCT 60 NA Rattus norvegicus 81 Pink1 ENSRNOG00000015385 ENSRNOT00000065497 1 1 2 80 5 156682868 156683580 GAATATCTCGGCAGGATCCT 59 156677513 156677531 CTGTTTGCTGAACCCAAGG 59 NA Rattus norvegicus 81 Pink1 ENSRNOG00000015385 ENSRNOT00000083474 2 1 2 86 5 156681757 156682199 TCCTCGTTATGAAGAACTACCC 59 156681692 156681710 AGGTCATCATGGTAGCCAG 59 NA Rattus norvegicus 81 Rbpms ENSRNOG00000013328 ENSRNOT00000017883,ENSRNOT00000068011 1 2 2 80 16 62056684 62056702 CTCGTAGGGACTCCAAACC 60 62056746 62086665 TGTGAGCTCATATGGCTCC 59 NA Rattus norvegicus 81 Casp9 ENSRNOG00000012944 ENSRNOT00000017972,ENSRNOT00000088523,ENSRNOT00000080721,ENSRNOT00000085378 1 4 4 112 5 160356362 160358472 ATCGAGGATATTCAGCGGG 59 160358548 160358566 AAGCAGGAGATGAAGCGAG 60 NA Rattus norvegicus 81 LOC100360150 ENSRNOG00000029996 ENSRNOT00000036217 2 1 1 62 3 150156782 150156800 CTAAGTCAGAACCTGCAGC 58 150155808 150155829 ACATTGGTACTCACTAGAAGTG 58 NA DesignNoJunction Rattus norvegicus 81 Zfp385b ENSRNOG00000019065 ENSRNOT00000025803 2 1 2 108 3 64338565 64362753 CGAACTTTAACACAATGGACC 58 64338477 64338497 AGCTGACAGACATTACAAGAG 58 NA Rattus norvegicus 81 Ube2e3 ENSRNOG00000004544 ENSRNOT00000006429 1 1 2 200 3 65816753 65818550 GCTAACAGAATTCAGAAGGAGC 60 65864537 65869286 GAAGGTAACCTTTGGTGGC 59 NA Rattus norvegicus 81 Stmn3 ENSRNOG00000013657 ENSRNOT00000018697 2 1 2 93 3 176810854 176816044 CCGTATCTGCCTACAAGGAG 60 176810780 176810798 TAGATGGTGTTCGGGTGAG 59 NA Rattus norvegicus 81 Stmn3 ENSRNOG00000013657 ENSRNOT00000018697 3 1 2 94 3 176810856 176816045 ACCGTATCTGCCTACAAGG 59 176810780 176810798 TAGATGGTGTTCGGGTGAG 59 NA Rattus norvegicus 81 Pacsin3 ENSRNOG00000014204 ENSRNOT00000057176,ENSRNOT00000080266 2 2 2 80 3 80079254 80079276 GACTTCTCTTCTTCAAGGATGTG 59 80079316 80079437 GGAGCTCATGGAACTTGTC 58 NA Rattus norvegicus 81 SNORND104 ENSRNOG00000051842 ENSRNOT00000077717 3 1 1 61 5 153909203 153909222 GTTGACTTCCTATGCAGAGC 59 153909161 153909179 CAGACTCCGATTTGCATCG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA9 ENSRNOG00000052446 ENSRNOT00000078595 2 1 1 86 5 116944916 116944934 ACCCTGTGCATTCCTACAG 59 116944980 116945002 TTCTATAACCTTGCTCTGGAGAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059772 ENSRNOT00000078697 3 1 1 65 5 72221598 72221616 CACATGTGCATCAGAAGGT 58 72221551 72221569 CACAGGTCAGAACACTGTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000059800 ENSRNOT00000080157 3 1 1 60 2 126678670 126678688 TAGAGGACTGCAGGTATGG 58 126678628 126678649 CTCTCCTCTATGACACCTACTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056961 ENSRNOT00000088344 1 1 1 60 2 76072844 76072864 CTCTCCATAGAATTCTGGGTG 58 76072804 76072824 GTTGAGTTTCCCATATGTGGA 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000060458 ENSRNOT00000087565 1 1 1 64 5 171157607 171157627 GGTATTACTGCTGTGTCACAC 59 171157653 171157671 AGTGCAAACATGGCTTCTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000059502 ENSRNOT00000082265 3 1 1 79 5 113926628 113926646 TAACTAAGCCGGCCAAGTC 60 113926567 113926585 TACACTACCAAGGAGGCTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000059004 ENSRNOT00000078950 2 1 1 92 2 240904134 240904154 TAAGAGCAAGTGTGGTATCTG 58 240904062 240904080 CTACACAGGCAAAGGTGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000054115 ENSRNOT00000088135 3 1 1 72 2 119156571 119156590 TGCAGCCACTTAAGTAACCT 59 119156625 119156643 ATCACCAAGAGTGCAAAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07007645.1 ENSRNOG00000036436 ENSRNOT00000054548 1 1 1 60 2 21942289 21942312 CTCTTAAGAATCATCCTTTCCAGG 59 21942330 21942349 GTGAGCCTAGCCTTTAATGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058729 ENSRNOT00000077493 3 1 1 61 2 237871872 237871890 CCATGTCACTGTGCATCAG 59 237871829 237871850 GAACACTGAATGTAGACATAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060003 ENSRNOT00000086700 2 1 1 60 5 105094239 105094261 CTCACAGATTCATCAGTACTCCT 60 105094280 105094299 GCTCAACAATCCATCAAGGT 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000052585 ENSRNOT00000087324 2 1 1 65 8 13762767 13762785 AGATCTGGCTGTGACACAG 59 13762811 13762832 ACCTTACTAGACAGGTTAGCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA70 ENSRNOG00000058395 ENSRNOT00000081859 3 1 1 61 16 71209010 71209028 CAGTGGTGTCCTGGTAGAG 59 71208967 71208985 GTCCCTAGGATCCCTTAGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000056523 ENSRNOT00000079322 3 1 1 61 8 101915561 101915579 CTTATCCATCGCCCTCCAG 60 101915602 101915622 GTTGTGTTTCCTACATTTGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000060368 ENSRNOT00000079018 2 1 1 60 5 169380814 169380833 CACCAAACAAGCTTCAAGAG 58 169380773 169380794 AGATGAATGATTCTGGCTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000057119 ENSRNOT00000090670 1 1 1 60 8 68024860 68024878 GAGAAGATTAGCATGGCCC 58 68024902 68024920 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA32 ENSRNOG00000052965 ENSRNOT00000082169 2 1 1 64 8 91224321 91224339 TTTGCTGTGGACATGACCA 60 91224275 91224296 TGCTAGTCAAGTAGCATATGGA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07048075.1 ENSRNOG00000046591 ENSRNOT00000072391 1 1 1 60 5 60516480 60516498 CTCTGTGAGTTCAAGGCCA 60 60516521 60516540 TTATACTCCTGGCTGTCCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA41 ENSRNOG00000055453 ENSRNOT00000087703 1 1 1 60 5 59494931 59494951 GTGGGAAAGAAACTGTTACAC 58 59494968 59494991 CCCATATTCCTCTTTCTATGTAGC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 Hammerhead_HH9 ENSRNOG00000051617 ENSRNOT00000086203 3 1 1 63 5 59378593 59378611 GTTACCTGCAGCTGATGAG 58 59378637 59378656 TTAAGCCAGTACTGCAGGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056286 ENSRNOT00000079873 1 1 1 60 11 27171116 27171137 GAGGATATGACTACATCCAGTG 58 27171077 27171098 AGGCTACTAATCAATCGTTCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055026 ENSRNOT00000085820 2 1 1 63 2 5782550 5782571 ACAAAGAAGATTAGAATGGCCC 59 5782508 5782526 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000058307 ENSRNOT00000087587 2 1 1 60 2 223128687 223128708 AGTACAGAGAATTATCATGGCC 58 223128726 223128747 ATGGAAGCTTCATGAATCAGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000058807 ENSRNOT00000084459 3 1 1 60 2 175713514 175713533 TCATATGTGCATCAGTCAGG 58 175713473 175713493 TTCATAGATCAGCACACTGAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056546 ENSRNOT00000083499 3 1 1 61 11 67543368 67543389 TAACATTGGAAGGATACAGAGG 57 67543405 67543429 CCTTAATTAGTATGTCATCCTTGGG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051434 ENSRNOT00000080715 3 1 1 72 11 43947904 43947922 GTTATGGCTGCTGTTTCAC 57 43947955 43947976 GAATACTCATTGTAGACACAGC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U1 ENSRNOG00000054745 ENSRNOT00000079195 1 1 1 71 11 34658378 34658396 TACTTGGCATGGGAGATGG 59 34658431 34658449 ATCCAGAGTGCAGTGAGTC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000059595 ENSRNOT00000077354 1 1 1 60 16 36628272 36628292 ACGGTACAGAGAAGATTAGCA 59 36628232 36628250 ACGCTTCACAAATTTGCGT 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000056035 ENSRNOT00000090043 3 1 1 63 11 67567113 67567134 CAGCAGGTCAATTTAACATTGG 59 67567071 67567090 ATGTCATCATTGAGCAAGGG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000053847 ENSRNOT00000079303 1 1 1 60 2 83035341 83035361 ATCAATACCTGGCAGAAAGGA 59 83035301 83035319 TGTTCACAGGTCAGAACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000060639 ENSRNOT00000090570 3 1 1 63 11 14141014 14141034 ACAGAGAAGATTAGCATGACC 58 14141059 14141077 AATATGGAACGCTTCACGA 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000051550 ENSRNOT00000086050 1 1 1 60 16 77847898 77847916 CTTTGAAGCATGGCATGTG 58 77847856 77847876 GCCTCTCACTTCTCTACTGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U4 ENSRNOG00000057551 ENSRNOT00000078181 1 1 1 60 8 32366178 32366198 GACAGAATCACAGCCAATGAG 59 32366219 32366238 GTCGCACTTTGAATTAGCAG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055668 ENSRNOT00000087388 3 1 1 60 2 255121128 255121147 TTTGAATGAAGGAAGCTGCT 58 255121087 255121108 GCTACTAATTCAGATGTTCACG 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000052158 ENSRNOT00000089307 2 1 1 60 8 122040918 122040937 GTCACATGTACATCAGGAGG 58 122040877 122040897 GTCTGAACACTGAGTGTAGAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07070441.1 ENSRNOG00000051744 ENSRNOT00000085200 1 1 1 60 8 70204457 70204476 ATGCTTGTGGGCAATAAGAG 59 70204416 70204436 TTGCTTCATCTGTAGGAACTG 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA15 ENSRNOG00000052277 ENSRNOT00000078472 2 1 1 60 16 10631129 10631150 CAGTCAGTAATTTACACAGCCA 59 10631090 10631109 CGGCCATCTTAAAGGAAGAC 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07071210.1 ENSRNOG00000023330 ENSRNOT00000037171 1 1 1 62 8 104949515 104949533 CTTCGCTAGCAAACAGGTG 59 104949559 104949577 ATGGTTCTGACCAGTTCGG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07004776.1 ENSRNOG00000051568 ENSRNOT00000079345 1 1 1 60 1 155954890 155954909 CAAGTTGCACAGAAATGGGA 59 155954849 155954868 TCTGAAGACTGTCACGACAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000061334 ENSRNOT00000079395 3 1 1 60 6 133828795 133828814 ACCAATGATGAGATCTGGTG 57 133828835 133828855 ATATCTGTTCACAAGGCTGTC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORD113 ENSRNOG00000059106 ENSRNOT00000080307 1 1 1 60 6 133770711 133770730 CAATGATGACAAGGTTTCGG 58 133770751 133770771 CAGACTGCTAGAGATGTAGTC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA2 ENSRNOG00000056178 ENSRNOT00000085819 2 1 1 60 6 74466473 74466491 TCGTACTGTAGCTGTTGGT 58 74466513 74466533 CAACAAACCACAGGAAGACAG 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000055514 ENSRNOT00000088718 2 1 1 60 X 152074555 152074576 AAGAAGCATTGCAGTTACAGAG 59 152074516 152074540 ATAGGTCAGATCACTGAGAATAGAC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA79 ENSRNOG00000057500 ENSRNOT00000078315 2 1 1 108 6 115337029 115337048 CTATAGGCATGGCACTAGGA 59 115336940 115336961 CCGCAAATTTCAGAGAATACAC 58 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07035368.1 ENSRNOG00000054882 ENSRNOT00000091384 2 1 1 60 12 11364213 11364232 AAAGGAGAAGGAGAGGAGTG 59 11364172 11364192 CTCCTCCTTTCCTTCCTTCTC 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07003935.2 ENSRNOG00000046102 ENSRNOT00000075611 3 1 1 60 1 121202909 121202927 TGATCAGTCAGGCTACTGG 59 121202867 121202886 GGCTTTGGTTATACCCAGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U6 ENSRNOG00000055269 ENSRNOT00000089917 3 1 1 62 X 105325837 105325855 AATACCGAGAAGAGTGGCA 58 105325880 105325899 AAGCCCACTTCACAAATGTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 7SK ENSRNOG00000051947 ENSRNOT00000080639 3 1 1 60 6 144539605 144539623 ACGTTCCCTTCTTCCTTCC 59 144539644 144539665 AGCATCAAGTTTGTAGAAGGGA 60 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07012302.1 ENSRNOG00000009115 ENSRNOT00000091813 3 1 1 65 2 192520890 192520908 CATACCAGCAGAAATGCCC 59 192520937 192520955 TCTTGGGTGGACACTTCTG 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 SNORA17 ENSRNOG00000056006 ENSRNOT00000083035 1 1 1 60 X 44184112 44184131 TGCACCTAGAAGCATTTCAG 58 44184152 44184172 CTCCATCACCTACTCATACAC 57 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 U2 ENSRNOG00000054491 ENSRNOT00000079930 1 1 1 60 9 65335354 65335372 GGTTGGAATAGGAGCTTGC 59 65335312 65335331 CTGGAGGTACTGCAATACCA 59 Novel DesignNoJunctionSingleExon Rattus norvegicus 81 AABR07073039.1 ENSRNOG00000028747 ENSRNOT00000034810 2 1 1 140 4 118705429 118705447 GATCA